Query 002589
Match_columns 904
No_of_seqs 217 out of 1834
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 7E-206 2E-210 1815.3 75.0 855 1-895 1-890 (977)
2 PRK14099 glycogen synthase; Pr 100.0 5E-57 1.1E-61 519.3 33.2 370 510-896 2-404 (485)
3 PRK14098 glycogen synthase; Pr 100.0 6.3E-57 1.4E-61 518.9 32.7 375 508-896 2-416 (489)
4 PLN02316 synthase/transferase 100.0 7E-57 1.5E-61 546.2 34.0 402 441-896 506-954 (1036)
5 PRK00654 glgA glycogen synthas 100.0 1.3E-55 2.8E-60 503.6 31.9 364 512-895 1-390 (466)
6 TIGR02095 glgA glycogen/starch 100.0 2.9E-55 6.3E-60 500.2 33.7 369 512-892 1-395 (473)
7 COG0297 GlgA Glycogen synthase 100.0 2.5E-53 5.5E-58 485.4 29.9 373 512-897 1-404 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 4.4E-52 9.5E-57 471.6 34.0 370 513-890 1-398 (476)
9 TIGR02094 more_P_ylases alpha- 100.0 9.8E-35 2.1E-39 341.4 31.3 372 514-891 1-511 (601)
10 PF08323 Glyco_transf_5: Starc 100.0 1.4E-36 3.1E-41 321.6 13.1 230 513-752 1-243 (245)
11 cd04299 GT1_Glycogen_Phosphory 100.0 5.3E-30 1.1E-34 307.0 29.8 369 513-891 87-600 (778)
12 TIGR02472 sucr_P_syn_N sucrose 100.0 1E-28 2.2E-33 280.2 29.6 303 526-892 24-370 (439)
13 TIGR02470 sucr_synth sucrose s 100.0 2.6E-28 5.7E-33 292.0 30.6 364 486-893 234-674 (784)
14 TIGR03449 mycothiol_MshA UDP-N 100.0 3.8E-28 8.2E-33 269.2 26.3 297 514-895 1-335 (405)
15 TIGR02468 sucrsPsyn_pln sucros 100.0 5.2E-28 1.1E-32 294.6 29.8 351 507-893 165-602 (1050)
16 TIGR02149 glgA_Coryne glycogen 100.0 6.8E-28 1.5E-32 264.1 27.7 284 512-895 1-313 (388)
17 cd03796 GT1_PIG-A_like This fa 100.0 3.9E-28 8.5E-33 270.6 26.2 279 513-897 1-304 (398)
18 PRK10307 putative glycosyl tra 100.0 3.5E-27 7.5E-32 263.5 28.0 305 512-892 1-337 (412)
19 PLN02871 UDP-sulfoquinovose:DA 100.0 4.3E-27 9.2E-32 268.7 27.3 286 509-891 56-360 (465)
20 cd04962 GT1_like_5 This family 100.0 3E-26 6.4E-31 248.4 27.8 277 512-891 1-299 (371)
21 PLN00142 sucrose synthase 99.9 3.8E-26 8.3E-31 273.7 25.0 359 486-890 258-694 (815)
22 cd03800 GT1_Sucrose_synthase T 99.9 2.8E-25 6.2E-30 242.0 27.4 282 527-892 20-332 (398)
23 cd03793 GT1_Glycogen_synthase_ 99.9 7.7E-26 1.7E-30 261.9 23.7 291 517-838 7-326 (590)
24 PRK10125 putative glycosyl tra 99.9 1.9E-25 4E-30 252.5 24.1 303 512-895 1-340 (405)
25 cd03812 GT1_CapH_like This fam 99.9 5.7E-25 1.2E-29 236.3 26.2 276 513-895 1-299 (358)
26 cd03819 GT1_WavL_like This fam 99.9 2.4E-24 5.2E-29 231.2 28.0 262 526-895 8-297 (355)
27 cd03802 GT1_AviGT4_like This f 99.9 1.5E-24 3.2E-29 231.0 25.4 250 512-895 1-277 (335)
28 cd04951 GT1_WbdM_like This fam 99.9 2E-24 4.3E-29 231.3 26.3 274 513-897 1-297 (360)
29 cd03805 GT1_ALG2_like This fam 99.9 7.2E-25 1.6E-29 240.6 22.9 289 512-892 1-329 (392)
30 cd04955 GT1_like_6 This family 99.9 7.7E-24 1.7E-28 227.5 28.8 278 513-897 1-303 (363)
31 PRK15484 lipopolysaccharide 1, 99.9 3.3E-24 7.1E-29 239.3 26.5 268 513-893 4-308 (380)
32 PLN02846 digalactosyldiacylgly 99.9 2E-24 4.2E-29 247.6 24.3 299 510-893 3-331 (462)
33 TIGR03088 stp2 sugar transfera 99.9 4.7E-24 1E-28 233.8 26.0 272 512-892 2-302 (374)
34 cd03792 GT1_Trehalose_phosphor 99.9 2.1E-24 4.6E-29 237.8 22.2 270 513-893 1-304 (372)
35 cd03821 GT1_Bme6_like This fam 99.9 1E-23 2.2E-28 222.5 25.5 287 513-896 1-315 (375)
36 cd03818 GT1_ExpC_like This fam 99.9 2.7E-23 5.8E-28 231.5 26.5 291 513-895 1-333 (396)
37 cd03795 GT1_like_4 This family 99.9 9.7E-23 2.1E-27 218.1 27.9 273 513-895 1-298 (357)
38 cd03807 GT1_WbnK_like This fam 99.9 6.8E-23 1.5E-27 215.4 25.3 278 513-896 1-302 (365)
39 cd03817 GT1_UGDG_like This fam 99.9 9.7E-23 2.1E-27 215.5 25.1 288 513-898 1-314 (374)
40 KOG1111 N-acetylglucosaminyltr 99.9 4.5E-24 9.7E-29 232.0 13.4 279 512-895 1-305 (426)
41 PRK09922 UDP-D-galactose:(gluc 99.9 8.4E-23 1.8E-27 224.9 23.6 258 512-892 1-287 (359)
42 PRK15427 colanic acid biosynth 99.9 1.6E-22 3.5E-27 228.3 25.5 188 638-892 116-334 (406)
43 cd03823 GT1_ExpE7_like This fa 99.9 2.9E-22 6.3E-27 211.7 25.5 275 513-895 1-296 (359)
44 cd03794 GT1_wbuB_like This fam 99.9 5.9E-22 1.3E-26 209.5 26.1 303 513-895 1-332 (394)
45 PRK15179 Vi polysaccharide bio 99.9 5E-22 1.1E-26 237.5 28.5 292 508-891 277-620 (694)
46 cd03825 GT1_wcfI_like This fam 99.9 3.8E-22 8.2E-27 214.2 23.7 266 512-893 1-295 (365)
47 cd03814 GT1_like_2 This family 99.9 4.6E-22 1E-26 211.1 23.9 283 513-897 1-301 (364)
48 cd03809 GT1_mtfB_like This fam 99.9 3.1E-22 6.6E-27 213.0 22.2 281 513-897 1-307 (365)
49 cd03799 GT1_amsK_like This is 99.9 2.6E-21 5.6E-26 207.0 25.9 264 513-896 1-295 (355)
50 cd03801 GT1_YqgM_like This fam 99.9 5.1E-21 1.1E-25 199.3 26.8 284 513-896 1-309 (374)
51 cd03811 GT1_WabH_like This fam 99.9 1.7E-21 3.7E-26 202.9 22.7 273 513-896 1-297 (353)
52 cd03822 GT1_ecORF704_like This 99.9 4.1E-21 9E-26 204.5 25.7 269 513-896 1-303 (366)
53 cd05844 GT1_like_7 Glycosyltra 99.9 1E-21 2.2E-26 212.7 21.3 193 638-895 80-303 (367)
54 cd03820 GT1_amsD_like This fam 99.9 5.1E-21 1.1E-25 199.4 24.7 259 513-892 1-282 (348)
55 PLN02501 digalactosyldiacylgly 99.9 2.1E-21 4.5E-26 227.7 24.0 414 384-896 175-652 (794)
56 cd03808 GT1_cap1E_like This fa 99.9 1.3E-20 2.7E-25 197.3 27.7 270 513-893 1-294 (359)
57 cd03798 GT1_wlbH_like This fam 99.9 1.6E-20 3.5E-25 196.8 27.2 287 514-896 1-312 (377)
58 cd03816 GT1_ALG1_like This fam 99.9 5.9E-21 1.3E-25 215.7 25.5 292 513-894 5-349 (415)
59 PRK15490 Vi polysaccharide bio 99.9 2.9E-20 6.3E-25 215.7 24.6 138 724-891 339-501 (578)
60 TIGR03087 stp1 sugar transfera 99.8 1.4E-20 3E-25 210.1 16.7 204 639-893 103-329 (397)
61 PLN02275 transferase, transfer 99.8 1.6E-19 3.4E-24 201.0 25.0 277 527-895 14-342 (371)
62 cd03806 GT1_ALG11_like This fa 99.8 1.3E-19 2.9E-24 205.4 24.3 299 521-891 6-353 (419)
63 cd03813 GT1_like_3 This family 99.8 2.4E-19 5.3E-24 206.1 17.2 201 639-892 172-400 (475)
64 PLN02949 transferase, transfer 99.8 5.2E-17 1.1E-21 187.3 29.5 135 718-891 214-383 (463)
65 cd03804 GT1_wbaZ_like This fam 99.8 3.3E-18 7.2E-23 186.2 17.8 130 718-896 147-294 (351)
66 PHA01633 putative glycosyl tra 99.8 1.2E-17 2.5E-22 185.4 20.8 141 721-892 89-253 (335)
67 PHA01630 putative group 1 glyc 99.8 6.9E-18 1.5E-22 186.7 16.8 175 650-897 53-245 (331)
68 PF05693 Glycogen_syn: Glycoge 99.8 1.3E-17 2.9E-22 193.1 19.6 284 517-837 2-320 (633)
69 TIGR02918 accessory Sec system 99.7 1.7E-17 3.7E-22 192.9 17.7 191 638-891 209-421 (500)
70 PRK00726 murG undecaprenyldiph 99.7 1E-16 2.2E-21 176.0 21.5 259 512-892 2-278 (357)
71 cd03788 GT1_TPS Trehalose-6-Ph 99.7 3.2E-17 6.9E-22 188.6 17.3 231 620-895 111-398 (460)
72 cd03785 GT1_MurG MurG is an N- 99.7 6.8E-16 1.5E-20 167.7 22.0 257 513-891 1-277 (350)
73 TIGR01133 murG undecaprenyldip 99.7 6.2E-16 1.4E-20 167.9 20.8 255 512-891 1-275 (348)
74 cd04946 GT1_AmsK_like This fam 99.7 5.9E-16 1.3E-20 174.8 19.1 134 718-891 177-339 (407)
75 cd04949 GT1_gtfA_like This fam 99.7 5.5E-16 1.2E-20 169.8 17.0 187 639-891 98-307 (372)
76 TIGR02400 trehalose_OtsA alpha 99.7 7.8E-16 1.7E-20 177.3 17.9 231 620-895 107-393 (456)
77 cd01635 Glycosyltransferase_GT 99.6 3.5E-14 7.6E-19 141.1 18.9 83 816-898 109-217 (229)
78 PRK05749 3-deoxy-D-manno-octul 99.6 1.1E-13 2.4E-18 156.3 23.6 142 717-892 171-350 (425)
79 PRK13609 diacylglycerol glucos 99.6 2.1E-13 4.5E-18 151.6 22.9 273 509-891 2-298 (380)
80 PLN02605 monogalactosyldiacylg 99.5 2.3E-13 4.9E-18 152.4 18.2 134 723-891 149-307 (382)
81 PRK14501 putative bifunctional 99.5 1.6E-13 3.5E-18 166.3 17.1 231 620-895 113-399 (726)
82 PF13439 Glyco_transf_4: Glyco 99.5 7.7E-13 1.7E-17 127.5 16.7 176 514-771 1-176 (177)
83 PLN03063 alpha,alpha-trehalose 99.5 4.2E-13 9.1E-18 164.0 17.9 223 621-888 128-401 (797)
84 PF13579 Glyco_trans_4_4: Glyc 99.5 5.9E-13 1.3E-17 126.2 12.9 160 528-765 1-160 (160)
85 cd04950 GT1_like_1 Glycosyltra 99.4 1E-11 2.2E-16 138.6 23.5 187 637-893 99-309 (373)
86 PRK13608 diacylglycerol glucos 99.3 2.5E-11 5.3E-16 136.9 18.4 133 723-892 146-299 (391)
87 PRK00025 lpxB lipid-A-disaccha 99.3 5.9E-11 1.3E-15 131.5 17.4 184 631-891 78-285 (380)
88 TIGR02398 gluc_glyc_Psyn gluco 99.3 1.1E-10 2.3E-15 135.8 18.8 223 620-887 112-406 (487)
89 PF00534 Glycos_transf_1: Glyc 99.3 1E-11 2.2E-16 121.9 7.9 100 795-897 2-127 (172)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 1.2E-10 2.7E-15 127.6 15.9 195 629-891 79-301 (363)
91 TIGR00236 wecB UDP-N-acetylglu 99.1 6.5E-10 1.4E-14 123.3 15.3 193 630-892 78-299 (365)
92 TIGR00215 lpxB lipid-A-disacch 99.1 3.7E-09 8.1E-14 119.5 18.7 185 629-889 80-289 (385)
93 PLN03064 alpha,alpha-trehalose 99.0 5.7E-09 1.2E-13 128.8 17.5 229 622-895 213-497 (934)
94 COG0438 RfaG Glycosyltransfera 98.9 1.9E-08 4.1E-13 103.0 14.9 134 724-895 150-309 (381)
95 KOG0853 Glycosyltransferase [C 98.9 1.6E-08 3.4E-13 117.0 14.4 314 507-898 30-413 (495)
96 PF09314 DUF1972: Domain of un 98.7 4.9E-07 1.1E-11 93.4 18.4 179 513-767 3-185 (185)
97 PRK09814 beta-1,6-galactofuran 98.7 5.1E-07 1.1E-11 99.9 17.0 185 638-899 61-273 (333)
98 PF13477 Glyco_trans_4_2: Glyc 98.5 3.5E-06 7.7E-11 80.4 16.2 138 513-732 1-139 (139)
99 KOG3742 Glycogen synthase [Car 98.4 1.9E-07 4.2E-12 105.1 5.4 168 641-837 175-351 (692)
100 PF13692 Glyco_trans_1_4: Glyc 98.4 4E-07 8.7E-12 86.1 6.8 85 811-895 2-104 (135)
101 PRK12446 undecaprenyldiphospho 98.4 5E-05 1.1E-09 85.4 23.1 87 796-890 173-276 (352)
102 cd04300 GT1_Glycogen_Phosphory 98.3 1.3E-05 2.9E-10 97.8 18.6 251 640-896 300-664 (797)
103 COG0058 GlgP Glucan phosphoryl 98.3 4.6E-06 1E-10 100.6 13.1 360 522-888 110-604 (750)
104 KOG1387 Glycosyltransferase [C 98.1 0.00011 2.5E-09 81.6 18.1 203 638-893 148-388 (465)
105 PRK14985 maltodextrin phosphor 98.0 6.1E-05 1.3E-09 91.9 14.7 246 640-890 302-657 (798)
106 PRK14986 glycogen phosphorylas 98.0 0.00015 3.2E-09 88.8 18.0 242 640-887 313-668 (815)
107 PRK10117 trehalose-6-phosphate 97.9 0.00029 6.2E-09 82.4 17.9 222 620-887 103-376 (474)
108 PF00982 Glyco_transf_20: Glyc 97.9 0.00031 6.6E-09 82.4 17.4 218 622-885 123-395 (474)
109 TIGR02093 P_ylase glycogen/sta 97.9 0.00011 2.3E-09 89.9 13.8 251 640-896 297-661 (794)
110 COG0380 OtsA Trehalose-6-phosp 97.8 0.00063 1.4E-08 79.6 18.4 220 620-885 127-401 (486)
111 PF00862 Sucrose_synth: Sucros 97.8 0.00045 9.7E-09 80.4 16.9 242 485-775 250-531 (550)
112 PF00343 Phosphorylase: Carboh 97.6 0.00061 1.3E-08 82.6 13.8 247 641-893 215-578 (713)
113 COG0707 MurG UDP-N-acetylgluco 97.6 0.0072 1.6E-07 68.7 21.6 124 512-680 1-125 (357)
114 PLN02205 alpha,alpha-trehalose 97.6 0.002 4.3E-08 80.6 18.2 202 642-886 203-459 (854)
115 PF04007 DUF354: Protein of un 97.4 0.022 4.8E-07 64.3 21.4 254 512-895 1-276 (335)
116 TIGR00606 rad50 rad50. This fa 97.3 0.081 1.7E-06 69.6 27.9 140 133-313 767-906 (1311)
117 TIGR02169 SMC_prok_A chromosom 97.3 0.1 2.3E-06 66.7 28.5 54 132-185 675-728 (1164)
118 TIGR03713 acc_sec_asp1 accesso 97.2 0.0014 3E-08 77.8 10.9 78 812-891 320-456 (519)
119 PRK02224 chromosome segregatio 97.2 0.11 2.4E-06 65.2 27.4 119 245-366 414-553 (880)
120 PF15070 GOLGA2L5: Putative go 97.1 0.041 8.9E-07 66.8 21.8 193 170-406 19-227 (617)
121 PRK02224 chromosome segregatio 97.1 0.11 2.4E-06 65.3 26.3 34 157-190 188-223 (880)
122 KOG2941 Beta-1,4-mannosyltrans 97.1 0.049 1.1E-06 61.4 20.0 221 638-891 101-370 (444)
123 PHA02562 46 endonuclease subun 97.1 0.1 2.2E-06 61.9 24.1 62 246-307 216-281 (562)
124 TIGR02169 SMC_prok_A chromosom 97.0 0.16 3.4E-06 65.1 26.5 14 386-399 956-969 (1164)
125 TIGR02168 SMC_prok_B chromosom 97.0 0.24 5.2E-06 63.2 27.6 15 527-542 1091-1105(1179)
126 TIGR02168 SMC_prok_B chromosom 97.0 0.34 7.4E-06 61.8 28.9 57 131-187 670-726 (1179)
127 PRK03918 chromosome segregatio 96.9 0.3 6.6E-06 61.2 27.2 23 826-848 830-852 (880)
128 KOG0933 Structural maintenance 96.8 0.09 1.9E-06 65.4 20.4 244 156-445 674-922 (1174)
129 TIGR03590 PseG pseudaminic aci 96.7 0.2 4.4E-06 54.8 20.5 73 812-890 172-264 (279)
130 PF07888 CALCOCO1: Calcium bin 96.6 0.31 6.7E-06 58.2 22.7 167 247-419 203-395 (546)
131 TIGR00606 rad50 rad50. This fa 96.6 0.32 6.9E-06 64.1 25.4 110 249-369 791-900 (1311)
132 KOG0971 Microtubule-associated 96.6 0.84 1.8E-05 56.7 26.1 181 197-428 339-547 (1243)
133 KOG4643 Uncharacterized coiled 96.6 0.37 8.1E-06 60.2 23.4 125 249-376 263-405 (1195)
134 KOG0161 Myosin class II heavy 96.4 0.35 7.6E-06 65.0 23.9 135 278-420 1762-1896(1930)
135 cd03784 GT1_Gtf_like This fami 96.4 0.15 3.2E-06 57.5 17.9 73 811-890 240-328 (401)
136 COG1196 Smc Chromosome segrega 96.3 2.6 5.7E-05 55.2 30.3 57 133-189 669-725 (1163)
137 PRK03918 chromosome segregatio 96.2 1.9 4.1E-05 54.2 28.2 18 409-426 455-472 (880)
138 KOG0996 Structural maintenance 96.2 1.3 2.7E-05 56.7 25.4 61 115-177 240-306 (1293)
139 PRK11637 AmiB activator; Provi 96.2 0.38 8.2E-06 56.0 20.3 84 130-216 46-129 (428)
140 COG1196 Smc Chromosome segrega 96.2 1.2 2.7E-05 58.2 26.8 26 248-273 826-851 (1163)
141 PF12000 Glyco_trans_4_3: Gkyc 96.1 0.056 1.2E-06 55.7 11.6 41 719-771 130-170 (171)
142 PF00038 Filament: Intermediat 96.1 1.6 3.5E-05 48.3 23.7 164 161-368 63-234 (312)
143 KOG0161 Myosin class II heavy 96.1 2.2 4.7E-05 57.9 28.1 102 243-344 978-1101(1930)
144 PF10174 Cast: RIM-binding pro 96.1 0.63 1.4E-05 58.1 22.0 224 157-391 112-353 (775)
145 TIGR02919 accessory Sec system 95.9 0.032 6.8E-07 65.2 9.9 116 724-891 239-376 (438)
146 PF00261 Tropomyosin: Tropomyo 95.9 3.3 7.2E-05 44.6 25.0 74 142-215 12-85 (237)
147 PHA02562 46 endonuclease subun 95.8 1.9 4E-05 51.4 24.2 24 287-310 329-352 (562)
148 PF07888 CALCOCO1: Calcium bin 95.7 3.1 6.7E-05 50.0 24.7 10 447-456 448-457 (546)
149 TIGR03185 DNA_S_dndD DNA sulfu 95.6 0.9 2E-05 55.7 21.1 44 266-309 375-419 (650)
150 PF15070 GOLGA2L5: Putative go 95.6 2.7 5.8E-05 51.5 24.6 152 147-341 24-182 (617)
151 PF13528 Glyco_trans_1_3: Glyc 95.6 0.84 1.8E-05 49.7 18.7 69 811-890 193-274 (318)
152 PF05701 WEMBL: Weak chloropla 95.5 2.3 4.9E-05 51.1 23.2 48 131-178 34-81 (522)
153 PRK04778 septation ring format 95.4 2.1 4.5E-05 51.9 23.0 156 247-406 314-473 (569)
154 PF12128 DUF3584: Protein of u 95.4 3.9 8.5E-05 53.8 26.7 99 245-345 322-421 (1201)
155 PF12718 Tropomyosin_1: Tropom 95.3 0.38 8.3E-06 48.2 13.5 102 313-414 1-106 (143)
156 KOG4674 Uncharacterized conser 95.3 4.1 8.9E-05 54.8 26.0 176 247-431 1001-1203(1822)
157 KOG0996 Structural maintenance 95.3 0.98 2.1E-05 57.6 19.5 86 130-215 784-876 (1293)
158 PRK01156 chromosome segregatio 95.2 4.4 9.5E-05 51.5 25.9 27 245-271 418-444 (895)
159 KOG0980 Actin-binding protein 95.1 8.9 0.00019 48.1 26.4 182 169-397 361-546 (980)
160 KOG0612 Rho-associated, coiled 95.1 4.3 9.4E-05 52.3 24.1 111 296-407 582-693 (1317)
161 PRK01156 chromosome segregatio 94.8 8.3 0.00018 49.0 26.6 27 403-429 466-492 (895)
162 COG0419 SbcC ATPase involved i 94.8 18 0.00038 46.4 33.9 22 522-543 811-832 (908)
163 TIGR03185 DNA_S_dndD DNA sulfu 94.8 4.1 8.9E-05 50.1 23.0 28 343-370 391-418 (650)
164 PF09726 Macoilin: Transmembra 94.7 1.5 3.2E-05 54.4 19.0 93 201-304 422-518 (697)
165 KOG4673 Transcription factor T 94.7 1.9 4.2E-05 52.3 19.0 156 264-425 474-656 (961)
166 PF12718 Tropomyosin_1: Tropom 94.6 1.5 3.3E-05 44.0 15.6 87 326-412 49-139 (143)
167 TIGR03568 NeuC_NnaA UDP-N-acet 94.6 1.2 2.7E-05 50.7 16.9 29 858-891 277-305 (365)
168 KOG0971 Microtubule-associated 94.5 2.5 5.4E-05 52.8 19.6 218 170-427 273-504 (1243)
169 KOG4674 Uncharacterized conser 94.5 10 0.00022 51.3 26.4 155 127-303 1208-1368(1822)
170 PF15294 Leu_zip: Leucine zipp 94.4 4.3 9.4E-05 45.1 19.7 87 243-340 125-211 (278)
171 COG0763 LpxB Lipid A disacchar 94.2 0.84 1.8E-05 52.5 14.3 132 720-890 132-287 (381)
172 PF12128 DUF3584: Protein of u 94.2 18 0.0004 47.8 28.3 52 131-182 614-665 (1201)
173 KOG0976 Rho/Rac1-interacting s 94.2 8.1 0.00018 47.9 22.7 88 166-274 120-207 (1265)
174 PRK01021 lpxB lipid-A-disaccha 94.1 4.6 0.0001 49.3 20.9 86 795-889 400-510 (608)
175 PRK04863 mukB cell division pr 94.0 11 0.00024 50.7 25.7 58 370-431 431-488 (1486)
176 PF04849 HAP1_N: HAP1 N-termin 93.9 2.1 4.6E-05 48.0 16.3 136 245-406 162-301 (306)
177 PRK11637 AmiB activator; Provi 93.8 3.3 7.2E-05 48.3 18.7 15 203-217 123-137 (428)
178 PF05557 MAD: Mitotic checkpoi 93.8 0.017 3.8E-07 71.2 0.0 161 262-426 286-467 (722)
179 KOG0964 Structural maintenance 93.8 5.4 0.00012 50.4 20.6 204 129-345 676-901 (1200)
180 TIGR01005 eps_transp_fam exopo 93.7 10 0.00022 47.4 23.7 39 511-553 545-583 (754)
181 COG3883 Uncharacterized protei 93.7 2.5 5.4E-05 46.6 16.1 171 128-311 21-192 (265)
182 PLN03229 acetyl-coenzyme A car 93.7 1.5 3.2E-05 54.2 15.6 147 197-365 429-612 (762)
183 PF05667 DUF812: Protein of un 93.5 24 0.00052 43.4 25.5 110 247-370 423-532 (594)
184 TIGR00634 recN DNA repair prot 93.4 9 0.00019 46.4 21.9 20 374-393 322-341 (563)
185 PF05622 HOOK: HOOK protein; 93.3 0.024 5.1E-07 70.0 0.0 23 247-269 456-478 (713)
186 PF06160 EzrA: Septation ring 93.3 7.9 0.00017 47.0 21.2 101 115-221 59-160 (560)
187 KOG0250 DNA repair protein RAD 93.2 12 0.00027 48.0 22.9 69 140-219 209-277 (1074)
188 COG0419 SbcC ATPase involved i 93.2 27 0.00058 44.9 26.7 103 265-367 275-378 (908)
189 PRK09039 hypothetical protein; 93.2 1.3 2.8E-05 50.5 13.5 41 248-298 65-105 (343)
190 PRK04778 septation ring format 93.1 17 0.00036 44.3 23.6 17 394-410 509-525 (569)
191 TIGR03492 conserved hypothetic 92.9 2.4 5.2E-05 49.0 15.5 28 858-890 292-319 (396)
192 KOG0249 LAR-interacting protei 92.9 4.2 9.2E-05 49.8 17.5 152 252-422 134-285 (916)
193 PRK04863 mukB cell division pr 92.8 7.3 0.00016 52.3 21.4 152 152-321 279-430 (1486)
194 KOG4643 Uncharacterized coiled 92.7 26 0.00056 44.9 24.2 106 306-412 395-512 (1195)
195 COG5185 HEC1 Protein involved 92.7 1.8 3.8E-05 50.7 13.6 102 240-344 261-362 (622)
196 PRK10929 putative mechanosensi 92.7 21 0.00047 46.7 24.6 43 277-320 169-211 (1109)
197 PF05622 HOOK: HOOK protein; 92.6 0.034 7.3E-07 68.6 0.0 182 245-430 195-387 (713)
198 PF00261 Tropomyosin: Tropomyo 92.4 13 0.00029 40.0 19.4 17 353-369 172-188 (237)
199 PF05557 MAD: Mitotic checkpoi 92.1 1.1 2.3E-05 55.7 12.1 158 244-422 462-640 (722)
200 KOG0018 Structural maintenance 92.1 33 0.00071 44.3 24.2 213 159-424 669-899 (1141)
201 KOG4673 Transcription factor T 92.1 22 0.00048 43.8 21.8 214 244-477 417-662 (961)
202 KOG0995 Centromere-associated 92.0 4.8 0.0001 48.4 16.4 154 244-421 229-393 (581)
203 KOG0933 Structural maintenance 91.9 19 0.00041 46.1 21.8 84 243-329 294-377 (1174)
204 TIGR01843 type_I_hlyD type I s 91.6 6.8 0.00015 44.6 17.0 36 406-441 246-281 (423)
205 PF02684 LpxB: Lipid-A-disacch 91.5 3 6.6E-05 48.1 14.0 86 795-889 172-282 (373)
206 KOG0978 E3 ubiquitin ligase in 91.4 46 0.001 41.5 24.4 273 135-430 336-625 (698)
207 KOG0250 DNA repair protein RAD 91.3 9.4 0.0002 49.0 18.7 35 249-283 733-767 (1074)
208 KOG0977 Nuclear envelope prote 91.3 23 0.0005 42.9 21.1 174 165-368 38-215 (546)
209 PRK09841 cryptic autophosphory 91.3 23 0.00051 44.3 22.3 40 510-553 529-568 (726)
210 PF08288 PIGA: PIGA (GPI ancho 91.2 0.55 1.2E-05 43.7 6.1 38 638-679 48-85 (90)
211 PF14915 CCDC144C: CCDC144C pr 91.1 27 0.00058 39.3 19.9 62 364-432 211-272 (305)
212 TIGR02680 conserved hypothetic 90.8 24 0.00052 47.3 22.9 9 840-848 1306-1314(1353)
213 PF14662 CCDC155: Coiled-coil 90.8 7.6 0.00016 41.0 14.6 145 247-397 26-188 (193)
214 PF01496 V_ATPase_I: V-type AT 90.7 0.55 1.2E-05 58.6 7.6 102 325-427 152-275 (759)
215 KOG4360 Uncharacterized coiled 90.7 14 0.00031 43.9 18.2 157 246-405 162-346 (596)
216 PF05701 WEMBL: Weak chloropla 90.7 46 0.001 40.2 24.0 29 252-280 297-325 (522)
217 KOG4809 Rab6 GTPase-interactin 90.6 10 0.00022 45.4 17.0 130 247-396 328-457 (654)
218 KOG0994 Extracellular matrix g 90.6 45 0.00097 43.5 23.1 30 187-216 1492-1523(1758)
219 TIGR03007 pepcterm_ChnLen poly 90.6 2.7 5.9E-05 49.6 12.9 39 326-364 331-369 (498)
220 PF11997 DUF3492: Domain of un 90.6 2.6 5.7E-05 46.4 11.9 42 512-554 1-42 (268)
221 PF09787 Golgin_A5: Golgin sub 90.6 10 0.00022 45.5 17.7 61 360-420 252-320 (511)
222 PRK11281 hypothetical protein; 90.5 38 0.00083 44.6 23.6 54 371-424 394-453 (1113)
223 KOG0977 Nuclear envelope prote 90.5 13 0.00027 45.1 18.0 180 245-431 164-353 (546)
224 COG1579 Zn-ribbon protein, pos 90.4 15 0.00032 40.2 16.9 45 142-186 14-58 (239)
225 PF05667 DUF812: Protein of un 90.3 24 0.00052 43.4 20.5 12 476-487 544-555 (594)
226 PF15397 DUF4618: Domain of un 90.2 11 0.00024 41.5 16.0 149 263-439 62-224 (258)
227 PF10174 Cast: RIM-binding pro 90.1 47 0.001 42.2 23.2 153 252-428 331-487 (775)
228 COG4942 Membrane-bound metallo 89.6 31 0.00067 40.6 19.7 73 138-213 38-110 (420)
229 PRK10929 putative mechanosensi 89.6 62 0.0013 42.7 24.4 54 371-424 370-429 (1109)
230 KOG0995 Centromere-associated 89.6 57 0.0012 39.7 26.9 27 249-275 331-357 (581)
231 cd07627 BAR_Vps5p The Bin/Amph 89.6 30 0.00065 36.8 18.4 81 347-427 112-197 (216)
232 KOG0999 Microtubule-associated 89.4 28 0.00061 41.9 19.2 127 165-340 7-135 (772)
233 PF09789 DUF2353: Uncharacteri 89.4 45 0.00097 38.1 21.6 197 245-475 67-282 (319)
234 KOG0978 E3 ubiquitin ligase in 89.3 26 0.00056 43.6 19.7 37 133-171 376-412 (698)
235 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.2 8.2 0.00018 38.1 12.9 127 251-393 4-131 (132)
236 PLN03229 acetyl-coenzyme A car 88.9 18 0.0004 45.0 18.0 41 171-216 434-474 (762)
237 TIGR01843 type_I_hlyD type I s 88.9 9.7 0.00021 43.4 15.2 27 252-278 153-179 (423)
238 KOG0243 Kinesin-like protein [ 88.6 12 0.00025 48.2 16.5 21 255-275 474-494 (1041)
239 PRK11281 hypothetical protein; 88.6 23 0.0005 46.5 19.6 18 407-424 364-381 (1113)
240 TIGR03007 pepcterm_ChnLen poly 88.4 26 0.00057 41.4 18.8 27 280-306 210-236 (498)
241 PLN02939 transferase, transfer 88.4 25 0.00055 45.3 19.3 134 250-395 257-390 (977)
242 COG1579 Zn-ribbon protein, pos 88.1 5.6 0.00012 43.4 11.8 128 156-333 42-170 (239)
243 PF13851 GAS: Growth-arrest sp 88.0 12 0.00026 39.7 14.0 27 383-409 145-171 (201)
244 PF12252 SidE: Dot/Icm substra 88.0 55 0.0012 42.3 21.2 39 359-397 1287-1325(1439)
245 PF09728 Taxilin: Myosin-like 88.0 53 0.0011 37.2 22.9 122 293-424 112-234 (309)
246 TIGR03017 EpsF chain length de 87.8 4.6 0.0001 46.8 11.9 39 326-364 318-356 (444)
247 PF05010 TACC: Transforming ac 87.7 20 0.00043 38.4 15.5 32 393-424 141-172 (207)
248 PF09787 Golgin_A5: Golgin sub 87.7 62 0.0013 39.0 21.4 78 250-334 274-352 (511)
249 PF04912 Dynamitin: Dynamitin 87.6 23 0.0005 41.0 17.3 137 271-421 206-365 (388)
250 PRK11519 tyrosine kinase; Prov 87.6 51 0.0011 41.3 21.4 40 510-553 524-563 (719)
251 PF08317 Spc7: Spc7 kinetochor 87.5 7.6 0.00016 43.9 13.1 49 138-186 122-176 (325)
252 PF08317 Spc7: Spc7 kinetochor 87.5 9.9 0.00022 43.0 14.0 76 259-337 158-234 (325)
253 KOG0976 Rho/Rac1-interacting s 87.4 33 0.00072 43.0 18.5 50 249-298 315-368 (1265)
254 KOG0999 Microtubule-associated 87.1 12 0.00026 44.9 14.3 41 316-356 198-245 (772)
255 KOG0979 Structural maintenance 87.1 35 0.00076 43.8 19.0 215 159-399 174-389 (1072)
256 KOG0612 Rho-associated, coiled 86.3 1.3E+02 0.0028 39.9 24.5 26 810-836 1131-1156(1317)
257 PF09325 Vps5: Vps5 C terminal 86.0 44 0.00095 35.3 17.1 79 347-425 132-215 (236)
258 TIGR01005 eps_transp_fam exopo 85.2 14 0.0003 46.2 14.9 104 252-367 290-393 (754)
259 TIGR01000 bacteriocin_acc bact 84.8 28 0.00061 41.0 16.4 29 247-275 94-122 (457)
260 cd07623 BAR_SNX1_2 The Bin/Amp 84.6 61 0.0013 34.7 18.1 94 335-429 108-205 (224)
261 COG1817 Uncharacterized protei 84.6 81 0.0018 36.1 19.8 134 721-895 123-280 (346)
262 PF13514 AAA_27: AAA domain 84.4 1.5E+02 0.0033 39.1 25.4 34 269-302 738-771 (1111)
263 PF10186 Atg14: UV radiation r 84.2 8.3 0.00018 41.9 11.0 19 160-178 28-46 (302)
264 KOG4302 Microtubule-associated 84.2 94 0.002 38.8 20.6 71 377-457 308-384 (660)
265 smart00787 Spc7 Spc7 kinetocho 84.0 20 0.00044 40.6 14.1 78 249-336 203-281 (312)
266 PRK09039 hypothetical protein; 83.9 31 0.00068 39.5 15.8 49 353-404 112-160 (343)
267 COG4942 Membrane-bound metallo 83.8 17 0.00037 42.7 13.5 53 130-182 58-110 (420)
268 PF15619 Lebercilin: Ciliary p 83.3 37 0.00081 35.9 14.9 30 245-274 63-92 (194)
269 KOG0963 Transcription factor/C 83.2 1.3E+02 0.0027 37.2 21.4 40 155-194 127-166 (629)
270 KOG3156 Uncharacterized membra 83.2 5.6 0.00012 42.5 8.6 141 125-345 56-200 (220)
271 TIGR02680 conserved hypothetic 83.2 1.9E+02 0.0041 39.2 28.6 113 166-308 276-388 (1353)
272 cd00176 SPEC Spectrin repeats, 83.1 22 0.00048 35.5 12.8 38 249-286 32-69 (213)
273 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.9 8.8 0.00019 37.8 9.5 56 249-304 58-114 (132)
274 PF06705 SF-assemblin: SF-asse 82.5 70 0.0015 34.7 17.1 155 262-431 39-193 (247)
275 COG0497 RecN ATPase involved i 82.3 73 0.0016 38.9 18.4 34 152-185 164-197 (557)
276 KOG0243 Kinesin-like protein [ 82.3 1.1E+02 0.0023 40.0 20.5 19 249-267 496-514 (1041)
277 cd07665 BAR_SNX1 The Bin/Amphi 82.3 82 0.0018 34.4 17.6 76 348-424 131-210 (234)
278 KOG0994 Extracellular matrix g 82.0 1.4E+02 0.0031 39.3 20.9 58 159-216 1549-1610(1758)
279 PF13844 Glyco_transf_41: Glyc 81.9 2.2 4.8E-05 50.6 5.7 92 799-896 276-394 (468)
280 PF09789 DUF2353: Uncharacteri 81.4 23 0.00049 40.3 13.1 123 244-366 80-212 (319)
281 PF05911 DUF869: Plant protein 81.4 39 0.00085 42.7 16.3 106 245-366 94-199 (769)
282 PF01576 Myosin_tail_1: Myosin 81.1 0.48 1E-05 59.9 0.0 60 247-306 423-486 (859)
283 PF05278 PEARLI-4: Arabidopsis 80.7 28 0.00061 38.7 13.2 136 130-307 125-261 (269)
284 COG5185 HEC1 Protein involved 80.5 37 0.0008 40.3 14.5 215 123-379 151-373 (622)
285 COG1519 KdtA 3-deoxy-D-manno-o 80.5 1.3E+02 0.0028 35.6 24.1 142 717-893 170-349 (419)
286 KOG0946 ER-Golgi vesicle-tethe 80.3 83 0.0018 39.8 17.9 101 247-347 734-858 (970)
287 cd07647 F-BAR_PSTPIP The F-BAR 80.1 56 0.0012 35.3 15.2 29 247-275 57-85 (239)
288 COG4717 Uncharacterized conser 80.0 69 0.0015 40.8 17.3 230 159-409 557-798 (984)
289 KOG4677 Golgi integral membran 79.5 75 0.0016 37.7 16.5 75 239-323 298-382 (554)
290 PF09730 BicD: Microtubule-ass 79.2 36 0.00079 42.6 14.9 91 184-299 56-146 (717)
291 KOG0018 Structural maintenance 79.0 67 0.0014 41.7 17.1 173 243-427 683-870 (1141)
292 PF15619 Lebercilin: Ciliary p 78.8 40 0.00087 35.7 13.3 29 248-276 24-52 (194)
293 PF05483 SCP-1: Synaptonemal c 78.6 1.9E+02 0.004 36.3 22.0 76 240-315 447-526 (786)
294 PF02350 Epimerase_2: UDP-N-ac 78.0 38 0.00082 38.6 13.8 133 723-891 121-282 (346)
295 KOG4438 Centromere-associated 77.8 1.6E+02 0.0034 35.0 19.8 213 127-372 95-335 (446)
296 PF09730 BicD: Microtubule-ass 77.7 2.1E+02 0.0045 36.3 22.4 53 163-216 125-182 (717)
297 PF12761 End3: Actin cytoskele 77.5 7.1 0.00015 41.4 7.1 62 273-334 88-151 (195)
298 PF07407 Seadorna_VP6: Seadorn 77.3 6.7 0.00015 44.2 7.2 105 249-412 31-136 (420)
299 KOG0979 Structural maintenance 77.1 1.9E+02 0.0041 37.7 20.0 41 377-420 408-448 (1072)
300 cd07664 BAR_SNX2 The Bin/Amphi 77.0 1.2E+02 0.0026 33.2 18.4 79 347-426 130-212 (234)
301 PF06008 Laminin_I: Laminin Do 76.7 1.2E+02 0.0026 33.1 19.6 60 294-353 159-219 (264)
302 PRK10246 exonuclease subunit S 76.6 2.6E+02 0.0056 36.9 26.8 35 247-281 294-328 (1047)
303 PRK10884 SH3 domain-containing 76.4 5.4 0.00012 42.6 6.1 20 169-188 96-115 (206)
304 TIGR00634 recN DNA repair prot 76.2 1E+02 0.0023 37.4 17.6 50 247-296 172-224 (563)
305 PRK10869 recombination and rep 76.2 1.9E+02 0.0042 35.3 23.1 22 385-406 345-366 (553)
306 PF04012 PspA_IM30: PspA/IM30 76.2 48 0.001 35.1 13.2 102 291-405 26-136 (221)
307 KOG2129 Uncharacterized conser 76.0 54 0.0012 38.4 13.9 86 253-341 182-275 (552)
308 cd07596 BAR_SNX The Bin/Amphip 75.8 1E+02 0.0022 31.7 17.3 81 348-428 115-200 (218)
309 PF04156 IncA: IncA protein; 75.6 25 0.00054 36.2 10.6 40 275-314 82-121 (191)
310 KOG0992 Uncharacterized conser 75.5 69 0.0015 38.4 14.9 82 251-335 232-314 (613)
311 KOG1003 Actin filament-coating 75.5 26 0.00055 37.3 10.4 56 315-370 14-73 (205)
312 KOG0963 Transcription factor/C 75.3 2.2E+02 0.0047 35.3 22.3 71 323-395 253-335 (629)
313 PF07106 TBPIP: Tat binding pr 75.2 6 0.00013 40.4 5.9 61 242-302 71-137 (169)
314 COG3660 Predicted nucleoside-d 75.2 1.5E+02 0.0032 33.4 17.7 39 512-558 1-39 (329)
315 COG4913 Uncharacterized protei 74.9 42 0.00091 41.8 13.3 32 380-411 775-806 (1104)
316 TIGR03017 EpsF chain length de 74.2 1.2E+02 0.0026 35.3 16.9 42 352-397 256-298 (444)
317 KOG0804 Cytoplasmic Zn-finger 74.1 56 0.0012 38.7 13.6 62 353-424 385-446 (493)
318 PRK10361 DNA recombination pro 74.0 2E+02 0.0043 34.7 18.5 26 376-401 135-160 (475)
319 KOG0239 Kinesin (KAR3 subfamil 73.8 1.8E+02 0.0039 36.6 18.8 94 167-283 108-201 (670)
320 KOG2129 Uncharacterized conser 73.6 2E+02 0.0043 34.1 19.4 119 247-382 133-283 (552)
321 PF10473 CENP-F_leu_zip: Leuci 73.4 75 0.0016 32.2 12.9 31 155-185 6-36 (140)
322 PF04156 IncA: IncA protein; 73.3 23 0.0005 36.5 9.7 18 250-267 95-112 (191)
323 COG3206 GumC Uncharacterized p 73.2 1.3E+02 0.0028 35.5 17.1 99 348-467 346-446 (458)
324 KOG1850 Myosin-like coiled-coi 72.9 1.8E+02 0.0039 33.3 23.5 64 143-214 23-86 (391)
325 smart00787 Spc7 Spc7 kinetocho 72.7 40 0.00087 38.2 12.0 54 245-301 146-199 (312)
326 PF06160 EzrA: Septation ring 72.6 2.4E+02 0.0052 34.6 23.2 172 247-422 310-488 (560)
327 TIGR00661 MJ1255 conserved hyp 72.5 26 0.00056 38.9 10.5 28 526-554 8-36 (321)
328 KOG0244 Kinesin-like protein [ 71.9 1.9E+02 0.0042 37.2 18.4 259 170-455 300-653 (913)
329 PF14073 Cep57_CLD: Centrosome 71.9 1.4E+02 0.003 31.5 15.2 147 136-337 2-173 (178)
330 PF07989 Microtub_assoc: Micro 71.8 9.5 0.00021 34.5 5.6 30 247-276 4-33 (75)
331 KOG0804 Cytoplasmic Zn-finger 71.7 27 0.00058 41.2 10.4 37 245-281 391-427 (493)
332 PF13524 Glyco_trans_1_2: Glyc 71.5 2.3 5.1E-05 38.1 1.7 31 865-895 1-31 (92)
333 PRK09841 cryptic autophosphory 71.5 27 0.00058 43.8 11.4 71 284-364 314-384 (726)
334 PF00038 Filament: Intermediat 71.1 1.7E+02 0.0037 32.4 25.0 176 249-431 88-280 (312)
335 TIGR01000 bacteriocin_acc bact 70.3 94 0.002 36.7 15.0 20 324-343 241-260 (457)
336 PF01975 SurE: Survival protei 70.2 5.6 0.00012 42.0 4.4 38 512-556 1-38 (196)
337 PF11932 DUF3450: Protein of u 69.7 39 0.00085 36.7 10.9 24 279-302 40-63 (251)
338 PF11559 ADIP: Afadin- and alp 69.6 51 0.0011 33.0 10.9 42 323-366 105-149 (151)
339 COG1842 PspA Phage shock prote 69.4 95 0.0021 33.7 13.5 73 290-367 26-98 (225)
340 TIGR01010 BexC_CtrB_KpsE polys 69.1 60 0.0013 36.9 12.7 64 280-345 241-304 (362)
341 PF07798 DUF1640: Protein of u 67.7 1.6E+02 0.0034 30.5 15.7 27 249-275 72-98 (177)
342 TIGR00998 8a0101 efflux pump m 67.7 73 0.0016 35.4 12.8 14 543-556 256-269 (334)
343 PF04100 Vps53_N: Vps53-like, 67.6 88 0.0019 36.4 13.7 125 247-386 22-147 (383)
344 KOG0964 Structural maintenance 67.0 3.3E+02 0.0072 35.6 18.8 87 280-369 313-409 (1200)
345 PRK10698 phage shock protein P 66.9 1.4E+02 0.0029 32.3 14.0 117 291-412 27-144 (222)
346 TIGR03794 NHPM_micro_HlyD NHPM 66.7 87 0.0019 36.4 13.6 25 327-351 228-252 (421)
347 PF10186 Atg14: UV radiation r 66.2 57 0.0012 35.4 11.4 52 252-303 22-78 (302)
348 KOG0946 ER-Golgi vesicle-tethe 66.1 2.4E+02 0.0053 36.0 17.2 59 351-409 807-876 (970)
349 KOG2273 Membrane coat complex 65.9 2.9E+02 0.0064 33.0 18.1 97 324-420 361-463 (503)
350 PF10267 Tmemb_cc2: Predicted 65.8 25 0.00054 41.2 8.7 31 243-273 212-242 (395)
351 PF13851 GAS: Growth-arrest sp 65.7 1.9E+02 0.0041 30.8 16.1 16 326-341 150-165 (201)
352 PF02951 GSH-S_N: Prokaryotic 65.6 7.5 0.00016 38.1 3.9 40 512-554 1-40 (119)
353 PF04912 Dynamitin: Dynamitin 64.8 49 0.0011 38.4 11.0 147 247-395 91-260 (388)
354 cd07666 BAR_SNX7 The Bin/Amphi 64.6 2.3E+02 0.0049 31.3 15.8 67 348-424 154-221 (243)
355 PRK11519 tyrosine kinase; Prov 63.9 50 0.0011 41.4 11.6 69 286-364 316-384 (719)
356 KOG1050 Trehalose-6-phosphate 63.8 80 0.0017 39.9 13.1 110 757-883 239-393 (732)
357 PF12325 TMF_TATA_bd: TATA ele 63.6 48 0.001 32.7 9.0 51 287-337 43-93 (120)
358 PF15188 CCDC-167: Coiled-coil 62.8 13 0.00027 34.6 4.6 60 247-306 2-61 (85)
359 PF09726 Macoilin: Transmembra 62.4 1.5E+02 0.0033 37.3 15.1 27 384-411 555-581 (697)
360 PF03033 Glyco_transf_28: Glyc 62.3 9.4 0.0002 36.4 3.9 27 528-554 9-35 (139)
361 PF12325 TMF_TATA_bd: TATA ele 61.9 37 0.00079 33.5 7.9 63 245-307 25-87 (120)
362 PF05384 DegS: Sensor protein 61.5 1E+02 0.0022 31.9 11.3 95 251-367 21-115 (159)
363 PF04111 APG6: Autophagy prote 61.5 30 0.00065 39.2 8.3 19 528-546 173-191 (314)
364 PF13166 AAA_13: AAA domain 60.9 3.6E+02 0.0077 33.5 18.1 21 355-375 389-409 (712)
365 PRK10476 multidrug resistance 60.4 1.2E+02 0.0026 34.2 12.9 13 543-555 260-272 (346)
366 PF13514 AAA_27: AAA domain 60.3 5.4E+02 0.012 34.2 30.8 45 261-305 283-327 (1111)
367 PF01576 Myosin_tail_1: Myosin 60.1 2.9 6.3E-05 53.1 0.0 119 282-412 708-830 (859)
368 TIGR02977 phageshock_pspA phag 60.0 1.7E+02 0.0038 31.2 13.3 106 291-401 27-133 (219)
369 PF10267 Tmemb_cc2: Predicted 59.9 65 0.0014 37.8 10.7 44 263-339 275-318 (395)
370 KOG4593 Mitotic checkpoint pro 59.5 4.6E+02 0.0099 33.1 20.9 229 169-431 54-286 (716)
371 PF08614 ATG16: Autophagy prot 58.6 26 0.00057 36.7 6.7 39 152-190 74-112 (194)
372 TIGR03794 NHPM_micro_HlyD NHPM 58.4 3.2E+02 0.007 31.8 16.3 14 543-556 309-322 (421)
373 TIGR01426 MGT glycosyltransfer 58.4 23 0.0005 40.2 6.8 74 812-890 227-315 (392)
374 PF08172 CASP_C: CASP C termin 58.2 34 0.00075 37.6 7.8 107 347-463 83-218 (248)
375 COG3206 GumC Uncharacterized p 58.0 1.4E+02 0.003 35.3 13.3 41 153-193 188-229 (458)
376 KOG0962 DNA repair protein RAD 58.0 6.3E+02 0.014 34.2 20.6 58 261-318 799-860 (1294)
377 KOG1962 B-cell receptor-associ 57.8 43 0.00092 36.2 8.1 14 244-257 115-128 (216)
378 PRK10869 recombination and rep 57.7 4.4E+02 0.0095 32.3 17.9 47 373-420 292-338 (553)
379 COG2433 Uncharacterized conser 57.3 16 0.00035 44.4 5.4 63 243-305 429-491 (652)
380 PRK10246 exonuclease subunit S 56.5 6.1E+02 0.013 33.6 27.6 8 812-819 1008-1015(1047)
381 PF06548 Kinesin-related: Kine 56.5 2.5E+02 0.0053 33.7 14.4 87 299-397 381-471 (488)
382 PRK09343 prefoldin subunit bet 56.1 66 0.0014 31.5 8.6 50 259-308 62-112 (121)
383 PRK11199 tyrA bifunctional cho 56.0 1.1E+02 0.0024 35.3 11.8 27 528-554 105-131 (374)
384 PF00804 Syntaxin: Syntaxin; 55.0 1.6E+02 0.0035 26.5 11.8 83 327-422 15-103 (103)
385 KOG2072 Translation initiation 53.9 6.1E+02 0.013 32.8 22.6 91 129-219 541-652 (988)
386 cd07652 F-BAR_Rgd1 The F-BAR ( 53.7 2.3E+02 0.0051 30.7 13.1 163 247-413 62-227 (234)
387 PF07083 DUF1351: Protein of u 53.5 3.2E+02 0.0068 29.4 15.7 186 262-467 20-207 (215)
388 KOG1937 Uncharacterized conser 53.2 4.8E+02 0.01 31.4 17.2 48 247-301 228-275 (521)
389 COG3914 Spy Predicted O-linked 53.1 27 0.00057 42.6 6.3 89 799-893 421-538 (620)
390 KOG3565 Cdc42-interacting prot 53.1 5.6E+02 0.012 32.2 19.1 114 134-280 6-120 (640)
391 COG4913 Uncharacterized protei 53.1 6E+02 0.013 32.5 19.5 75 475-554 975-1059(1104)
392 PF01442 Apolipoprotein: Apoli 52.9 2.5E+02 0.0053 28.0 19.1 10 388-397 166-175 (202)
393 PF14915 CCDC144C: CCDC144C pr 52.4 4E+02 0.0088 30.3 17.8 77 285-364 183-267 (305)
394 PF14362 DUF4407: Domain of un 52.2 1.5E+02 0.0032 33.0 11.7 73 278-350 132-213 (301)
395 PF05911 DUF869: Plant protein 51.7 4.3E+02 0.0094 33.9 16.6 110 258-370 531-644 (769)
396 PRK05771 V-type ATP synthase s 51.0 76 0.0017 39.2 10.1 104 361-478 192-298 (646)
397 PF04012 PspA_IM30: PspA/IM30 50.8 2.6E+02 0.0056 29.6 12.8 85 260-346 26-118 (221)
398 PF07106 TBPIP: Tat binding pr 50.7 50 0.0011 33.7 7.1 54 279-333 84-137 (169)
399 PRK05771 V-type ATP synthase s 50.7 1.3E+02 0.0028 37.2 12.0 31 159-189 93-123 (646)
400 TIGR01010 BexC_CtrB_KpsE polys 50.5 1.6E+02 0.0034 33.7 11.8 139 279-420 168-311 (362)
401 KOG3850 Predicted membrane pro 50.2 2.6E+02 0.0057 32.8 13.1 134 158-349 266-403 (455)
402 PF09744 Jnk-SapK_ap_N: JNK_SA 50.1 2.5E+02 0.0053 29.1 11.9 75 247-337 33-107 (158)
403 cd00176 SPEC Spectrin repeats, 49.7 2.7E+02 0.0059 27.6 15.5 17 265-281 31-47 (213)
404 PF08687 ASD2: Apx/Shroom doma 49.3 4.2E+02 0.0092 29.7 16.4 149 245-417 95-259 (264)
405 PLN02166 dTDP-glucose 4,6-dehy 48.5 24 0.00052 41.4 5.0 42 502-553 111-152 (436)
406 PF13747 DUF4164: Domain of un 48.3 1.9E+02 0.0041 27.1 9.8 52 353-404 11-62 (89)
407 KOG1103 Predicted coiled-coil 48.3 4.8E+02 0.01 30.4 14.5 251 121-410 2-281 (561)
408 PHA03392 egt ecdysteroid UDP-g 48.0 26 0.00056 42.1 5.3 40 511-555 20-59 (507)
409 KOG4687 Uncharacterized coiled 47.4 3.4E+02 0.0073 30.6 12.9 153 247-416 87-256 (389)
410 PRK03598 putative efflux pump 47.3 2.1E+02 0.0047 32.0 12.1 16 541-556 253-268 (331)
411 cd07651 F-BAR_PombeCdc15_like 47.1 3.9E+02 0.0085 28.7 15.7 52 247-298 57-110 (236)
412 PRK00286 xseA exodeoxyribonucl 47.0 2.3E+02 0.0049 33.3 12.7 86 326-424 305-390 (438)
413 cd07630 BAR_SNX_like The Bin/A 46.9 3.8E+02 0.0083 28.5 17.6 49 384-432 135-184 (198)
414 KOG3958 Putative dynamitin [Cy 46.9 4.9E+02 0.011 29.7 19.8 80 129-215 56-143 (371)
415 TIGR02195 heptsyl_trn_II lipop 46.5 74 0.0016 35.3 8.3 73 795-870 161-259 (334)
416 PF05278 PEARLI-4: Arabidopsis 46.3 2.1E+02 0.0045 32.1 11.3 148 143-332 112-262 (269)
417 PRK10884 SH3 domain-containing 45.7 3.5E+02 0.0076 29.1 12.7 33 270-302 82-114 (206)
418 PF01920 Prefoldin_2: Prefoldi 45.7 73 0.0016 29.3 6.9 47 260-306 54-101 (106)
419 KOG1853 LIS1-interacting prote 45.7 4.8E+02 0.01 29.2 17.4 173 250-444 13-197 (333)
420 PF03962 Mnd1: Mnd1 family; I 45.6 1.7E+02 0.0036 30.9 10.2 30 348-379 108-137 (188)
421 PF08172 CASP_C: CASP C termin 44.9 79 0.0017 34.8 7.9 31 315-345 117-147 (248)
422 KOG0962 DNA repair protein RAD 44.9 9.7E+02 0.021 32.6 23.0 11 133-143 693-703 (1294)
423 KOG4603 TBP-1 interacting prot 44.5 1.2E+02 0.0026 31.9 8.5 94 249-362 78-171 (201)
424 PF06925 MGDG_synth: Monogalac 44.2 1.8E+02 0.0039 29.3 10.0 77 626-741 77-154 (169)
425 PF07111 HCR: Alpha helical co 44.1 7.8E+02 0.017 31.2 21.9 52 380-431 386-437 (739)
426 PF14193 DUF4315: Domain of un 44.0 75 0.0016 29.5 6.4 60 358-427 2-62 (83)
427 PF04849 HAP1_N: HAP1 N-termin 43.6 2.3E+02 0.0051 32.3 11.4 70 201-274 171-244 (306)
428 cd07667 BAR_SNX30 The Bin/Amph 43.5 4.9E+02 0.011 28.7 17.0 45 384-428 177-222 (240)
429 PRK10361 DNA recombination pro 43.4 5.4E+02 0.012 31.2 14.9 46 383-431 120-165 (475)
430 PLN02778 3,5-epimerase/4-reduc 43.4 35 0.00076 37.6 5.1 36 506-551 4-39 (298)
431 KOG1029 Endocytic adaptor prot 43.3 8.4E+02 0.018 31.4 22.3 29 131-162 312-340 (1118)
432 PF08580 KAR9: Yeast cortical 43.1 3.5E+02 0.0075 34.2 13.9 207 125-382 159-376 (683)
433 TIGR02338 gimC_beta prefoldin, 43.0 1.2E+02 0.0027 28.9 8.1 46 260-305 59-105 (110)
434 KOG0239 Kinesin (KAR3 subfamil 42.7 7.2E+02 0.016 31.4 16.5 26 529-554 373-400 (670)
435 PF06008 Laminin_I: Laminin Do 42.6 4.9E+02 0.011 28.5 23.1 72 353-424 188-259 (264)
436 PF04124 Dor1: Dor1-like famil 42.6 5.6E+02 0.012 29.2 17.0 56 249-304 6-62 (338)
437 KOG0993 Rab5 GTPase effector R 42.3 6.6E+02 0.014 29.9 19.8 42 157-198 146-187 (542)
438 PF09602 PhaP_Bmeg: Polyhydrox 42.1 4.3E+02 0.0093 27.7 12.1 95 323-429 12-108 (165)
439 PF11932 DUF3450: Protein of u 41.8 3.5E+02 0.0075 29.4 12.3 8 639-646 236-243 (251)
440 PF10168 Nup88: Nuclear pore c 41.6 6.5E+02 0.014 32.0 16.0 30 279-308 563-592 (717)
441 PF09304 Cortex-I_coil: Cortex 41.5 2.7E+02 0.0059 27.1 9.9 21 348-368 56-76 (107)
442 PF06248 Zw10: Centromere/kine 41.5 3.6E+02 0.0077 33.1 13.6 23 167-189 8-30 (593)
443 PF06548 Kinesin-related: Kine 41.5 6.8E+02 0.015 30.2 14.9 23 343-365 448-470 (488)
444 PF07334 IFP_35_N: Interferon- 41.4 19 0.0004 32.9 2.0 27 252-278 2-28 (76)
445 KOG1854 Mitochondrial inner me 40.9 8.3E+02 0.018 30.6 21.9 104 134-258 150-266 (657)
446 PF03915 AIP3: Actin interacti 40.7 6.1E+02 0.013 30.3 14.7 158 244-427 152-313 (424)
447 PF02994 Transposase_22: L1 tr 40.4 46 0.001 38.5 5.6 19 356-374 178-196 (370)
448 PF06248 Zw10: Centromere/kine 40.4 1.4E+02 0.0031 36.5 10.0 73 313-387 40-113 (593)
449 PF02403 Seryl_tRNA_N: Seryl-t 40.3 44 0.00096 31.4 4.5 96 197-304 2-97 (108)
450 PF11802 CENP-K: Centromere-as 40.2 72 0.0016 35.5 6.7 144 162-309 19-168 (268)
451 PF04899 MbeD_MobD: MbeD/MobD 40.2 99 0.0022 27.9 6.4 60 293-368 8-67 (70)
452 PRK08305 spoVFB dipicolinate s 40.0 55 0.0012 34.9 5.6 37 510-554 4-42 (196)
453 PF10146 zf-C4H2: Zinc finger- 39.7 1.8E+02 0.0039 31.8 9.5 84 268-365 19-103 (230)
454 COG4026 Uncharacterized protei 39.5 1.4E+02 0.0031 32.5 8.4 92 258-379 129-223 (290)
455 PF06005 DUF904: Protein of un 39.3 1.9E+02 0.004 26.2 8.0 54 339-398 10-63 (72)
456 TIGR01915 npdG NADPH-dependent 39.2 39 0.00084 35.7 4.4 27 528-554 7-33 (219)
457 PF08537 NBP1: Fungal Nap bind 39.2 2.6E+02 0.0055 32.2 10.8 51 133-187 85-137 (323)
458 PLN00016 RNA-binding protein; 39.1 30 0.00064 39.4 3.8 39 510-554 51-89 (378)
459 PF07246 Phlebovirus_NSM: Phle 38.9 45 0.00098 37.0 4.9 28 249-276 215-242 (264)
460 smart00806 AIP3 Actin interact 38.8 7.6E+02 0.016 29.6 16.3 208 168-397 80-312 (426)
461 PF08429 PLU-1: PLU-1-like pro 38.6 6.1E+02 0.013 28.5 14.6 53 326-378 250-302 (335)
462 KOG1937 Uncharacterized conser 38.5 7.9E+02 0.017 29.7 22.4 80 131-215 293-377 (521)
463 cd07624 BAR_SNX7_30 The Bin/Am 38.4 5E+02 0.011 27.4 15.6 50 244-303 8-57 (200)
464 PF07464 ApoLp-III: Apolipopho 38.2 1.7E+02 0.0036 30.2 8.5 70 348-426 79-149 (155)
465 COG4550 Predicted membrane pro 37.7 3.2E+02 0.0069 27.1 9.7 92 324-427 7-105 (120)
466 KOG4360 Uncharacterized coiled 37.7 1.3E+02 0.0027 36.5 8.4 18 172-189 197-214 (596)
467 PF06564 YhjQ: YhjQ protein; 37.6 50 0.0011 36.2 5.0 35 512-552 1-37 (243)
468 PF03999 MAP65_ASE1: Microtubu 37.6 11 0.00024 46.3 0.0 36 242-277 141-183 (619)
469 KOG4809 Rab6 GTPase-interactin 37.6 8.8E+02 0.019 30.0 18.6 139 144-324 312-457 (654)
470 PF03358 FMN_red: NADPH-depend 37.5 60 0.0013 31.7 5.2 40 512-554 1-40 (152)
471 KOG4403 Cell surface glycoprot 37.4 1.8E+02 0.0039 34.6 9.4 54 278-331 365-426 (575)
472 PF05659 RPW8: Arabidopsis bro 37.3 1.2E+02 0.0026 30.8 7.3 75 293-367 32-111 (147)
473 PF13870 DUF4201: Domain of un 37.2 4.8E+02 0.01 26.8 12.6 37 249-285 5-41 (177)
474 PF04111 APG6: Autophagy prote 37.2 1.6E+02 0.0035 33.4 9.1 33 247-279 103-135 (314)
475 PF04977 DivIC: Septum formati 37.1 42 0.00091 29.4 3.6 47 247-293 21-67 (80)
476 PF05325 DUF730: Protein of un 37.0 52 0.0011 31.3 4.3 48 247-297 68-115 (122)
477 PF09738 DUF2051: Double stran 37.0 2.6E+02 0.0057 31.8 10.6 166 139-314 97-302 (302)
478 PF04420 CHD5: CHD5-like prote 36.9 52 0.0011 33.7 4.8 57 253-309 36-94 (161)
479 PF03980 Nnf1: Nnf1 ; InterPr 36.7 1.6E+02 0.0034 27.9 7.7 86 154-271 16-108 (109)
480 COG1269 NtpI Archaeal/vacuolar 36.6 1.1E+02 0.0024 38.1 8.4 145 279-424 111-272 (660)
481 TIGR01007 eps_fam capsular exo 36.4 47 0.001 34.3 4.4 37 512-552 17-53 (204)
482 PF08702 Fib_alpha: Fibrinogen 36.4 4.8E+02 0.01 26.6 11.5 70 324-397 55-127 (146)
483 COG3879 Uncharacterized protei 36.3 89 0.0019 34.5 6.5 55 169-230 67-121 (247)
484 PF13949 ALIX_LYPXL_bnd: ALIX 36.1 6.1E+02 0.013 27.7 22.0 50 259-308 79-132 (296)
485 COG3883 Uncharacterized protei 36.0 4.7E+02 0.01 29.4 12.1 50 160-209 60-110 (265)
486 KOG3478 Prefoldin subunit 6, K 36.0 2.8E+02 0.006 27.3 9.0 99 158-314 11-109 (120)
487 PF04464 Glyphos_transf: CDP-G 35.9 2.5E+02 0.0053 31.7 10.4 137 720-890 130-292 (369)
488 PLN03188 kinesin-12 family pro 35.9 4.7E+02 0.01 35.2 13.7 155 145-363 1062-1238(1320)
489 PRK13411 molecular chaperone D 35.8 1.6E+02 0.0034 36.7 9.5 41 264-304 505-545 (653)
490 COG0569 TrkA K+ transport syst 35.6 42 0.0009 36.0 4.0 26 529-554 7-32 (225)
491 PF15188 CCDC-167: Coiled-coil 35.5 38 0.00083 31.6 3.1 64 172-260 4-67 (85)
492 KOG2398 Predicted proline-seri 35.5 9.9E+02 0.021 30.0 16.5 95 321-420 108-207 (611)
493 PF06818 Fez1: Fez1; InterPro 35.4 6E+02 0.013 27.4 14.1 13 173-185 10-22 (202)
494 cd00632 Prefoldin_beta Prefold 35.1 3.6E+02 0.0078 25.4 9.8 94 326-428 6-99 (105)
495 KOG4603 TBP-1 interacting prot 34.7 3.8E+02 0.0083 28.3 10.3 41 245-285 118-158 (201)
496 COG1382 GimC Prefoldin, chaper 34.6 2.4E+02 0.0051 28.0 8.5 52 259-310 61-113 (119)
497 COG3853 TelA Uncharacterized p 34.5 8.4E+02 0.018 28.9 15.1 102 258-362 156-266 (386)
498 PRK10037 cell division protein 34.5 49 0.0011 35.5 4.4 34 512-551 1-36 (250)
499 PF04880 NUDE_C: NUDE protein, 34.5 48 0.001 34.5 4.0 51 133-197 2-53 (166)
500 CHL00194 ycf39 Ycf39; Provisio 34.3 49 0.0011 36.5 4.5 27 528-554 7-33 (317)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.4e-206 Score=1815.32 Aligned_cols=855 Identities=67% Similarity=1.033 Sum_probs=786.8
Q ss_pred CCcccccccccCcceeecccCCCCcCCccccccccccccccccccccccCCCchhHHhhhcccCCCCCCCCCCCCCccCC
Q 002589 1 MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTS 80 (904)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~k~~~~k~~~~~~~~~~~~~~~~~~ 80 (904)
||.+-++||++|||+++.| +.+||+|+||++|+||+||||+|||||||||+|+++|+| ||+|++||+|+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 69 (977)
T PLN02939 1 AAAAESAALLSHGCGPIRS----------RAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQ-RSSNSKLQSNT 69 (977)
T ss_pred CchhhhhhHhhcccccccc----------CCCCCCchhccccccccccCCCchhhhhhhhccCCCCcc-cccccccccCc
Confidence 5778899999999999954 668999999999999999999999999999999999998 99999999999
Q ss_pred CCCCcccccccCC--CCC-Ccccccccccc-cccccccccccc----cccCCCccccccchhHHHHHHHhhhhhHHHHHH
Q 002589 81 DGDSESESSLIDR--EPI-DVEHTEEQNLG-SVFVPELKESLV----LNCDGGEELSTSQLDNLISMIRNAEKNILLLNE 152 (904)
Q Consensus 81 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (904)
|||+|+||++.++ +.| +.|+.+.+.+. +...++.+.+.. -+..+|+|+|++|||||+|||||||||||||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (977)
T PLN02939 70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ 149 (977)
T ss_pred cccccccccccccccccccCCCCccccccchhhcchhhhccccHhhhhccccccccccccHHHHHHHHHHHHhhhHhHHH
Confidence 9999999999986 444 44554444443 223334433332 367889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCC
Q 002589 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (904)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (904)
||++||+||+|||+|||+||||||||||||||||+|+|+++|+++||||+|+|||||||||+++++++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------- 219 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 002589 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (904)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (904)
.+|+|++||++||+|||+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+
T Consensus 220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 220 -----------CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred -----------ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 002589 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (904)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (904)
||+||++|| |||||||||+||++||||+|+|++||+||||||+|||+||+||+|||+||+||+++ ++||||+|+
T Consensus 289 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 362 (977)
T PLN02939 289 KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKL 362 (977)
T ss_pred hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999999999999999977 999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHHHHHHH
Q 002589 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLRE 472 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a~~l~~ 472 (904)
+|||+|+||+||+||+++|++||++||++|++|++|++|++.++|+++|||+|||+||||||+|+|+++|+++||+.||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~ 442 (977)
T PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLRE 442 (977)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchhhhHHhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 002589 473 MVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (904)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VIt 552 (904)
|||+|+.+++++|++|++++|+|++++|++|+.+.++++|||+|||+|++|++++||+|+|+.+|+++|+++||+|+||+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIl 522 (977)
T PLN02939 443 MVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVL 522 (977)
T ss_pred HHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHH
Q 002589 553 PKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE 632 (904)
Q Consensus 553 P~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe 632 (904)
|.|+++....+..++.....+..+|.|..+.++||.+.++||++|||+++||+.||+|+.+|++.|++.||++||+++++
T Consensus 523 P~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe 602 (977)
T PLN02939 523 PKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALE 602 (977)
T ss_pred CCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99998764444444433334445567766678999999999999999987776689999999999999999999999999
Q ss_pred HHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccc
Q 002589 633 LLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH 712 (904)
Q Consensus 633 ~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~ 712 (904)
++.+.+++|||||||||++++++|+++..|+..++.++|+|+||||+.|||.++...+..+|+++.+++++++++++ ++
T Consensus 603 ~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~ 681 (977)
T PLN02939 603 LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AH 681 (977)
T ss_pred HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cC
Confidence 99988899999999999999998999887766667789999999999999999888888899999888778888765 67
Q ss_pred cchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchh
Q 002589 713 DRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKA 792 (904)
Q Consensus 713 ~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~ 792 (904)
+++|++++|+.+||.|+||||+|++++.+ .+|+||++++..++.|+.+||||||++.|+|.+|++++.+|+++++.||.
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~ 760 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKA 760 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHH-HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhh
Confidence 89999999999999999999999999998 78899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCcccccH----------------
Q 002589 793 ENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQV---------------- 856 (904)
Q Consensus 793 ~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~~lek---------------- 856 (904)
.||.++|+++|++..+++.|+|+||||++++||++++++|+..+.+.+++|+|+|+|+.+.++.
T Consensus 761 ~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~ 840 (977)
T PLN02939 761 ANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIR 840 (977)
T ss_pred hhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999998422467999999999999999999999999877789999999997532110
Q ss_pred ----------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccc-ccCCCc
Q 002589 857 ----------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV-NNNCEP 895 (904)
Q Consensus 857 ----------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V-~~~v~~ 895 (904)
..+|++||+||+||+|||||+++||||++|+|+ ...+.|
T Consensus 841 FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG 890 (977)
T PLN02939 841 LILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG 890 (977)
T ss_pred EEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC
Confidence 069999999999999999999999999999554 444444
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=5e-57 Score=519.32 Aligned_cols=370 Identities=31% Similarity=0.507 Sum_probs=301.1
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeee
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g 589 (904)
++|||+||++|++|++++||+|+++..|.++|+++||+|.||+|.|+++... ...+... ..+..++.+ .+++|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~~ 76 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLAA 76 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEEE
Confidence 6799999999999999999999999999999999999999999999987421 1122111 111111222 3578888
Q ss_pred eeCCeeEEEeCCCCCCcccccCC-CCC------CCcchhhHHHHHHHHHHHHHHh--CCCccEEEEcCCchhhHHHHHHH
Q 002589 590 TIEGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWD 660 (904)
Q Consensus 590 ~v~GV~V~fIdp~~Ps~~F~r~~-iYg------~~dd~~Rfs~FsraaLe~Lrq~--g~kPDIIHaHdW~talvapL~~~ 660 (904)
..+|+++||++++ . ||.|++ +|+ +.|+..||.+||++++++++.. +++|||||||||+++++ |.++.
T Consensus 77 ~~~~v~~~~~~~~--~-~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~-~~~l~ 152 (485)
T PRK14099 77 RAGGLDLFVLDAP--H-LYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA-PAYLH 152 (485)
T ss_pred EeCCceEEEEeCh--H-hhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH-HHHHH
Confidence 8899999999853 2 787764 674 3589999999999999988753 67999999999999997 45544
Q ss_pred hhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHH
Q 002589 661 LYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR 740 (904)
Q Consensus 661 ~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~ 740 (904)
. . ...++|+|+|+||+.|+|.++...+..+|+++..+. ++.++ +++.+|+++.++.+||.|+|||+.+++++.
T Consensus 153 ~-~--~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~i~~ad~vitVS~~~a~ei~ 225 (485)
T PRK14099 153 Y-S--GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVE---YYGGIGYLKAGLQLADRITTVSPTYALEIQ 225 (485)
T ss_pred h-C--CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhh---hCCCccHHHHHHHhcCeeeecChhHHHHHh
Confidence 2 1 124689999999999999888776677787765542 22232 566788999999999999999999999998
Q ss_pred hhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecc
Q 002589 741 TSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL 820 (904)
Q Consensus 741 ~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL 820 (904)
+..+|.|+++++..+..++.+|+||||++.|+|.+++.++.+|+.+++.+|..+|..+|+++|++. +++.++|++|||+
T Consensus 226 ~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~li~~VgRL 304 (485)
T PRK14099 226 GPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDP-DPDALLLGVISRL 304 (485)
T ss_pred cccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCc-ccCCcEEEEEecC
Confidence 766788888888778899999999999999999999999999999999999999999999999973 4467899999999
Q ss_pred cCccCHHHHHHHHHHhhcCCcEEEEEecCCcc---ccc-----------------HH--H-HHHhcCeEEEcCCCCCChH
Q 002589 821 VPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQ-----------------VY--P-ILLSSFSFLRKHIFNICNL 877 (904)
Q Consensus 821 ~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~---~le-----------------ke--~-LyAaADVfVlPS~~EpFGL 877 (904)
+++||++++++|+..+.+.+++|+|+|+|+.. .++ .+ . ++++||+||+||++||||+
T Consensus 305 ~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl 384 (485)
T PRK14099 305 SWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGL 384 (485)
T ss_pred CccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcH
Confidence 99999999999999998778999999998631 111 11 3 4578999999999999999
Q ss_pred HHHHHccCCc-ccccCCCcc
Q 002589 878 YIKLGQGGDL-TVNNNCEPW 896 (904)
Q Consensus 878 v~LEAMg~gl-~V~~~v~~~ 896 (904)
++||||++|+ ||+.++.|.
T Consensus 385 ~~lEAma~G~ppVvs~~GGl 404 (485)
T PRK14099 385 TQLCALRYGAVPVVARVGGL 404 (485)
T ss_pred HHHHHHHCCCCcEEeCCCCc
Confidence 9999999994 666655444
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=6.3e-57 Score=518.94 Aligned_cols=375 Identities=28% Similarity=0.472 Sum_probs=296.0
Q ss_pred CCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--ccc---ccccceeeecccCCccc
Q 002589 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDD---LRALDVVVESYFDGRLF 582 (904)
Q Consensus 508 ~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~--v~~---L~~l~i~v~s~fdG~~~ 582 (904)
++++|||+|+++|++|++|+||+|+++..|.++|+++||+|.||+|.|+++.... ... +..+++. +.+...
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 77 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVP----LKEKTD 77 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEe----ecCeeE
Confidence 4566999999999999999999999999999999999999999999999874320 111 1111111 111110
Q ss_pred cceeeeeee--CCeeEEEeCCCCCCcccccCCCCCC-------CcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhh
Q 002589 583 KNKVWVSTI--EGLPVYFIEPHHPDKFFWRGQFYGE-------HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAF 653 (904)
Q Consensus 583 ~~~V~~g~v--~GV~V~fIdp~~Ps~~F~r~~iYg~-------~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~tal 653 (904)
-..++.... .|+++||++++ .||.|+.+|+. .||..||.+||+++++++++.+.+|||||||||++++
T Consensus 78 ~~~~~~~~~~~~~v~~~~~~~~---~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l 154 (489)
T PRK14098 78 LLHVKVTALPSSKIQTYFLYNE---KYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGL 154 (489)
T ss_pred EEEEEEecccCCCceEEEEeCH---HHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHH
Confidence 011221222 37999999853 38999888964 4999999999999999998778899999999999999
Q ss_pred HHHHHHHhhccC-CCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcC
Q 002589 654 VAPLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVS 732 (904)
Q Consensus 654 vapL~~~~ya~~-gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS 732 (904)
++.+++..+... .+.++|+|+|+||+.+||.++...+... ++...+ +.+. .++..+|+++.++.+||.|+|||
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~--~~~~~~n~lk~~i~~ad~VitVS 228 (489)
T PRK14098 155 VPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLH--REGDEVNMLYTGVEHADLLTTTS 228 (489)
T ss_pred HHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhh--hcCCcccHHHHHHHhcCcceeeC
Confidence 855444443221 2457999999999999998776544322 332221 1111 13467899999999999999999
Q ss_pred HHHHHHHHhh-cCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCC
Q 002589 733 PSYAQEVRTS-EGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARK 811 (904)
Q Consensus 733 ~syaeeI~~~-~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~ 811 (904)
++|++++.+. .+++||+++|..+..++.+||||||++.|+|.+++.++.+|+.+++.+|..+|..+++++|++. +++.
T Consensus 229 ~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~-~~~~ 307 (489)
T PRK14098 229 PRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPF-DEET 307 (489)
T ss_pred HHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCC-ccCC
Confidence 9999999763 5678898888777899999999999999999998889999999999999999999999999984 5578
Q ss_pred cEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCcc---cccH--------------------HHHHHhcCeEEE
Q 002589 812 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLR 868 (904)
Q Consensus 812 plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~---~lek--------------------e~LyAaADVfVl 868 (904)
|+|+|+||++++||++++++|+..+.+.+++|+|+|+|+.. .+++ ..+|++||+||+
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~ 387 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLM 387 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEe
Confidence 99999999999999999999999998778999999998742 1111 189999999999
Q ss_pred cCCCCCChHHHHHHccCCcc-cccCCCcc
Q 002589 869 KHIFNICNLYIKLGQGGDLT-VNNNCEPW 896 (904)
Q Consensus 869 PS~~EpFGLv~LEAMg~gl~-V~~~v~~~ 896 (904)
||++||||+++||||++|+| |...+.|+
T Consensus 388 PS~~E~~Gl~~lEAma~G~ppVv~~~GGl 416 (489)
T PRK14098 388 PGKIESCGMLQMFAMSYGTIPVAYAGGGI 416 (489)
T ss_pred CCCCCCchHHHHHHHhCCCCeEEecCCCC
Confidence 99999999999999999964 45555454
No 4
>PLN02316 synthase/transferase
Probab=100.00 E-value=7e-57 Score=546.16 Aligned_cols=402 Identities=43% Similarity=0.697 Sum_probs=313.5
Q ss_pred CChHHHHHHHHHhhhhhhhc-------ccChHHHHHHHHHHHhhcCcchhhhHHhhh---hhhhhhHHhhhhc-------
Q 002589 441 MPWEFWSRLLLIIDGWLLEK-------KLSTSEAKLLREMVWKRNGRIRDAYMECKE---KNEHEAISTFLKL------- 503 (904)
Q Consensus 441 ~~~~~~~~lll~~d~~~~~~-------~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------- 503 (904)
..+|+|.+.- +++|+... |...+++..+.. .-..+.|||++... ..+....++..++
T Consensus 506 ~~~ev~~~g~--~NrWth~~~~~~~~~m~~~~~g~~~~a----~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~ 579 (1036)
T PLN02316 506 GKPEVWFRGS--FNRWTHRLGPLPPQKMVPADNGSHLKA----TVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVF 579 (1036)
T ss_pred CCceEEEEcc--ccCcCCCCCCCCceeeeecCCCceEEE----EEEccccceEEEEEEecCCCCCCcCCCCCcCCccccc
Confidence 4568888777 57886542 333333321111 12345679987433 3344455555444
Q ss_pred cCCCCCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCcccc
Q 002589 504 TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFK 583 (904)
Q Consensus 504 ~~~~~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~ 583 (904)
.+..+.++|||+||+.|++|++++||+|+++.+|+++|+++||+|+||+|.|+++....+..+.. ...+..+. ..
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~----~~~~~~~~-~~ 654 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHY----QRSYSWGG-TE 654 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceE----EEEeccCC-EE
Confidence 25566788999999999999999999999999999999999999999999999764332222211 01111222 23
Q ss_pred ceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhc
Q 002589 584 NKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYV 663 (904)
Q Consensus 584 ~~V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya 663 (904)
++||.+.++|+++|||++++ .+|.++.+|+++|++.||.+||+++++++++.+.+|||||||||++++++.+++..|.
T Consensus 655 ~~v~~~~~~GV~vyfl~~~~--~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~ 732 (1036)
T PLN02316 655 IKVWFGKVEGLSVYFLEPQN--GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYA 732 (1036)
T ss_pred EEEEEEEECCcEEEEEeccc--cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhh
Confidence 67899999999999999642 4888888999999999999999999999998888999999999999998666655554
Q ss_pred cCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhc
Q 002589 664 PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSE 743 (904)
Q Consensus 664 ~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~ 743 (904)
..++.++|+|+|+||+.|++ ++++.++.+||+|||||+.|++++...
T Consensus 733 ~~~~~~~p~V~TiHnl~~~~--------------------------------n~lk~~l~~AD~ViTVS~tya~EI~~~- 779 (1036)
T PLN02316 733 HYGLSKARVVFTIHNLEFGA--------------------------------NHIGKAMAYADKATTVSPTYSREVSGN- 779 (1036)
T ss_pred hhccCCCCEEEEeCCcccch--------------------------------hHHHHHHHHCCEEEeCCHHHHHHHHhc-
Confidence 44567899999999976432 224567889999999999999998752
Q ss_pred CCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccc-cchhhhHHHHHHHcCCCCCCCCCcEEEEEecccC
Q 002589 744 GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-QGKAENKESIRKHLGLSSADARKPLVGCITRLVP 822 (904)
Q Consensus 744 ~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl-~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~ 822 (904)
+ .+..+..|+++||||||++.|+|.+++++|.+|+++++ .||..++..+|+++|++. .+.|+|+|||||++
T Consensus 780 ~------~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~--~d~plVg~VGRL~~ 851 (1036)
T PLN02316 780 S------AIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ--ADLPLVGIITRLTH 851 (1036)
T ss_pred c------CcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc--ccCeEEEEEecccc
Confidence 1 12234689999999999999999999999999999875 689999999999999983 36799999999999
Q ss_pred ccCHHHHHHHHHHhhcCCcEEEEEecCCccccc-------H---------------------HHHHHhcCeEEEcCCCCC
Q 002589 823 QKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQ-------V---------------------YPILLSSFSFLRKHIFNI 874 (904)
Q Consensus 823 qKGIdlLIeAiarLle~nvqLVLVGdGp~~~le-------k---------------------e~LyAaADVfVlPS~~Ep 874 (904)
+||+++|++|+..+++.+++|+|+|+||++.++ . ..+|++||+||+||++||
T Consensus 852 qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP 931 (1036)
T PLN02316 852 QKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEP 931 (1036)
T ss_pred ccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccC
Confidence 999999999999988778999999999753210 0 069999999999999999
Q ss_pred ChHHHHHHccCCc-ccccCCCcc
Q 002589 875 CNLYIKLGQGGDL-TVNNNCEPW 896 (904)
Q Consensus 875 FGLv~LEAMg~gl-~V~~~v~~~ 896 (904)
||+++||||++|+ ||...+.|.
T Consensus 932 ~GLvqLEAMa~GtppVvs~vGGL 954 (1036)
T PLN02316 932 CGLTQLTAMRYGSIPVVRKTGGL 954 (1036)
T ss_pred ccHHHHHHHHcCCCeEEEcCCCc
Confidence 9999999999996 445555554
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.3e-55 Score=503.62 Aligned_cols=364 Identities=37% Similarity=0.594 Sum_probs=298.7
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeee--
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS-- 589 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g-- 589 (904)
|||+||++|++|++++||+|+++.+|+++|+++||+|+||+|.|++..... ...... .. . . .++||.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~----~~-~--~--~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVV----GR-L--D--LFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEE----EE-e--e--eEEEEEEeE
Confidence 899999999999999999999999999999999999999999998753211 111110 00 0 0 1456655
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCC
Q 002589 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (904)
Q Consensus 590 ~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~g 669 (904)
..+|++||+++++ .||.++.+|++.|+..||.+|++++++++++.+.+|||||+|+|++++++.++...| ..++.+
T Consensus 71 ~~~gv~v~~v~~~---~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDAP---HLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeCH---HHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 4589999999863 378888899988899999999999999998877899999999999999865554444 233457
Q ss_pred CeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcc
Q 002589 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 749 (904)
Q Consensus 670 iPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~ 749 (904)
+|+|+|+|++.++|.++...+...|++...+. .+.++ ++.++|+++.++.+||.|+|||+.+++++....+|+||+
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLE---FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhh---cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 99999999999999887766666677654432 22232 345688999999999999999999999998767788888
Q ss_pred cccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHH
Q 002589 750 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 829 (904)
Q Consensus 750 ~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlL 829 (904)
+++..+..|+.+||||||++.|+|.+++.++.+|+.+++.+|..+|..+++++|++. ++.|+|+|+||++++||++++
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~--~~~~~i~~vGRl~~~KG~~~l 300 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPD--DDAPLFAMVSRLTEQKGLDLV 300 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCC--CCCcEEEEeeccccccChHHH
Confidence 777777889999999999999999988889999999888899999999999999973 367899999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEecCCcc---cccH-----------------H---HHHHhcCeEEEcCCCCCChHHHHHHccCC
Q 002589 830 RHAIYRTLELGGQFILLGSSPVP---HIQV-----------------Y---PILLSSFSFLRKHIFNICNLYIKLGQGGD 886 (904)
Q Consensus 830 IeAiarLle~nvqLVLVGdGp~~---~lek-----------------e---~LyAaADVfVlPS~~EpFGLv~LEAMg~g 886 (904)
++|+.++.+.+++|+|+|+|+.. .+++ + .+|++||+||+||++||||++++|||++|
T Consensus 301 i~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G 380 (466)
T PRK00654 301 LEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYG 380 (466)
T ss_pred HHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCC
Confidence 99999998778999999998632 1110 1 78999999999999999999999999999
Q ss_pred ccc-ccCCCc
Q 002589 887 LTV-NNNCEP 895 (904)
Q Consensus 887 l~V-~~~v~~ 895 (904)
+|+ ...+.|
T Consensus 381 ~p~V~~~~gG 390 (466)
T PRK00654 381 TLPIVRRTGG 390 (466)
T ss_pred CCEEEeCCCC
Confidence 866 444444
No 6
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.9e-55 Score=500.16 Aligned_cols=369 Identities=43% Similarity=0.678 Sum_probs=302.8
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++|++|++|++++||+|+++.+|+++|+++||+|+|++|.|++..... ............++.+..+.++||...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEV-DDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhh-ccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 899999999999999999999999999999999999999999998764321 1111111112223455566788999999
Q ss_pred CCeeEEEeCCCCCCcccccC-CCCC--CCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCC
Q 002589 592 EGLPVYFIEPHHPDKFFWRG-QFYG--EHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~-~iYg--~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~ 668 (904)
+|+++|+++++ .+|.++ .+|+ +.|++.||.+|++++++++++.+.+|||||+|||++++++.++...+. ..
T Consensus 80 ~~v~~~~i~~~---~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDNP---SLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEECH---HHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 99999999863 267774 5888 678999999999999999988788999999999999998554433321 11
Q ss_pred CCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 669 giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
++|+|+|+|++.++|.++...+..+|++...+. ...++ ++.++|+++.++.+||.|+|||+.+++++....+++|+
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLE---FYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhh---cCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 489999999999999887766666666644331 12222 45578999999999999999999999999876677888
Q ss_pred ccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHH
Q 002589 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 828 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdl 828 (904)
++++..++.++.+||||||++.|+|.+++.++.+|+.+++.+|..+|..+++++|++. +++.|+|+|+||++++||+++
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPV-DDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCc-cCCCCEEEEEecCccccChHH
Confidence 8777777899999999999999999988889999999888899999999999999984 446799999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEEecCCcc---cccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccC
Q 002589 829 IRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGG 885 (904)
Q Consensus 829 LIeAiarLle~nvqLVLVGdGp~~---~lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~ 885 (904)
+++|+.++.+.+++|+|+|+|+.. .++. ..+|++||++|+||.+||||++++|||++
T Consensus 309 li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~ 388 (473)
T TIGR02095 309 LLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY 388 (473)
T ss_pred HHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC
Confidence 999999998778999999999521 1110 17999999999999999999999999999
Q ss_pred CcccccC
Q 002589 886 DLTVNNN 892 (904)
Q Consensus 886 gl~V~~~ 892 (904)
|+||+..
T Consensus 389 G~pvI~s 395 (473)
T TIGR02095 389 GTVPIVR 395 (473)
T ss_pred CCCeEEc
Confidence 9887533
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-53 Score=485.42 Aligned_cols=373 Identities=36% Similarity=0.534 Sum_probs=302.8
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccc-cccceeeecccCCccccceeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDL-RALDVVVESYFDGRLFKNKVWVST 590 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L-~~l~i~v~s~fdG~~~~~~V~~g~ 590 (904)
|||++++.|+.|++++||+|+++..|.++|.++|++|+|++|.|+.... ...+. +.+. ..+..+.+...-..+....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQK-EWRDLLKVVG-KFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhh-hhccccceee-EeeeeecccceEEEEEeec
Confidence 8999999999999999999999999999999999999999999994432 22221 1110 0010111111101111222
Q ss_pred eC-CeeEEEeCCCCCCcccccC--CCCCCCcchhhHHHHHHHHHHHHHHhC--CCccEEEEcCCchhhHHHHHHHhhccC
Q 002589 591 IE-GLPVYFIEPHHPDKFFWRG--QFYGEHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLYVPK 665 (904)
Q Consensus 591 v~-GV~V~fIdp~~Ps~~F~r~--~iYg~~dd~~Rfs~FsraaLe~Lrq~g--~kPDIIHaHdW~talvapL~~~~ya~~ 665 (904)
.+ |+++++++.+ + +|.|. ..|++.|+..||.+|++++++++.... ..|||||+||||+++++.+....+ .
T Consensus 79 ~~~~v~~~lid~~--~-~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~--~ 153 (487)
T COG0297 79 KDGGVDLYLIDNP--A-LFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRY--R 153 (487)
T ss_pred ccCCCcEEEecCh--h-hcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcc--c
Confidence 23 3999999953 2 78773 678888999999999999999886544 589999999999999854443332 1
Q ss_pred CCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCC
Q 002589 666 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGG 745 (904)
Q Consensus 666 gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g 745 (904)
+...+|+|+||||+.|||.++.......|++...+. .+.++ ++..++++|+++.+||+|+||||+|++++.++.+|
T Consensus 154 ~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~---~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g 229 (487)
T COG0297 154 SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE---FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYG 229 (487)
T ss_pred ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee---ecCcchhhhhhheeccEEEEECHHHHHhhcccccc
Confidence 245799999999999999988666677888876654 44554 44678999999999999999999999999999999
Q ss_pred CCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccC
Q 002589 746 QGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG 825 (904)
Q Consensus 746 ~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKG 825 (904)
+|+++++.....++++|.||+|.+.|+|.+|+.++.+|+++++.+|..+|..|+.++|++. +.+.|++++||||+.|||
T Consensus 230 ~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~-~~~~pl~~~vsRl~~QKG 308 (487)
T COG0297 230 EGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDV-DLPGPLFGFVSRLTAQKG 308 (487)
T ss_pred ccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCC-CCCCcEEEEeeccccccc
Confidence 9999999888899999999999999999999999999999988789999999999999984 557799999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEEecCCcccccHH------------------------HHHHhcCeEEEcCCCCCChHHHHH
Q 002589 826 VHLIRHAIYRTLELGGQFILLGSSPVPHIQVY------------------------PILLSSFSFLRKHIFNICNLYIKL 881 (904)
Q Consensus 826 IdlLIeAiarLle~nvqLVLVGdGp~~~leke------------------------~LyAaADVfVlPS~~EpFGLv~LE 881 (904)
+|++++|+..+.+.++++||.|.| ++.++.. .+|++||++++||+|||||+++|+
T Consensus 309 ~dl~~~~i~~~l~~~~~~vilG~g-d~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~ 387 (487)
T COG0297 309 LDLLLEAIDELLEQGWQLVLLGTG-DPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLY 387 (487)
T ss_pred hhHHHHHHHHHHHhCceEEEEecC-cHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHH
Confidence 999999999999989999999999 4544321 999999999999999999999999
Q ss_pred HccCCc-ccccCCCccc
Q 002589 882 GQGGDL-TVNNNCEPWL 897 (904)
Q Consensus 882 AMg~gl-~V~~~v~~~l 897 (904)
||.+|+ |+...+.|+-
T Consensus 388 amryGtvpIv~~tGGLa 404 (487)
T COG0297 388 AMRYGTLPIVRETGGLA 404 (487)
T ss_pred HHHcCCcceEcccCCcc
Confidence 997774 4455555543
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=4.4e-52 Score=471.60 Aligned_cols=370 Identities=41% Similarity=0.637 Sum_probs=298.4
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+|||+|++|++++||+|+++.+|+++|+++||+|+||+|.|++........+... .....++.+....+++|...+.
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVL-RLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEE-EEEeeccCCceeEEEEEEEEeC
Confidence 699999999999999999999999999999999999999999997643321111111 0011234555667889999999
Q ss_pred CeeEEEeCCCCCCcccccCC-----CCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCC
Q 002589 593 GLPVYFIEPHHPDKFFWRGQ-----FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~-----iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL 667 (904)
|+++|+++++. +|.+.. .|++.++..+|.+|++++++++.+.+.+|||||+|||++++++.+++..+....+
T Consensus 80 gv~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDNPD---YFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcChH---HcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 99999998642 444433 4666788999999999999999987789999999999999875544443322224
Q ss_pred CCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCC
Q 002589 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 747 (904)
Q Consensus 668 ~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~G 747 (904)
.++|+|+|+|++.++|.++...+...+..+... ..+.+..++..+++++.++.+||.|++||+.+++++.+..+|+|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEEL---FHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccch---hhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 589999999999999877766555444432111 11222235667899999999999999999999999988777888
Q ss_pred cccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHH
Q 002589 748 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 827 (904)
Q Consensus 748 L~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGId 827 (904)
+++.+..+..++.+||||||.+.|+|..++.++..|+.+++.++..+|..+++++|++. +++.++|+|+||++++||++
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~-~~~~~~i~~vGrl~~~Kg~~ 312 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPV-DPDAPLFGFVGRLTEQKGID 312 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCc-CCCCCEEEEEeeccccccHH
Confidence 88877777789999999999999999988888888888888899999999999999972 35779999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccc---ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHcc
Q 002589 828 LIRHAIYRTLELGGQFILLGSSPVPH---IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 884 (904)
Q Consensus 828 lLIeAiarLle~nvqLVLVGdGp~~~---lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg 884 (904)
++++|+..+.+.+++|+|+|+|+... +++ ..+|++||++|+||.+||||++++|||+
T Consensus 313 ~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 392 (476)
T cd03791 313 LLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhh
Confidence 99999999987789999999986321 110 1799999999999999999999999999
Q ss_pred CCcccc
Q 002589 885 GDLTVN 890 (904)
Q Consensus 885 ~gl~V~ 890 (904)
+|+||+
T Consensus 393 ~G~pvI 398 (476)
T cd03791 393 YGTVPI 398 (476)
T ss_pred CCCCCE
Confidence 999885
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=9.8e-35 Score=341.39 Aligned_cols=372 Identities=19% Similarity=0.183 Sum_probs=271.3
Q ss_pred EEEEcCcc-----CCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCccc-cc-------cc---c--ccc------
Q 002589 514 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYD-RI-------DD---L--RAL------ 569 (904)
Q Consensus 514 ILhIt~E~-----~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~-~v-------~~---L--~~l------ 569 (904)
|+++|.|| .|. ..||+|+....-.++++.+|..+..++-.|...--. .+ +. . ..+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 56677776 365 689999999999999999999999998776532100 00 00 0 000
Q ss_pred -----ceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCcchhhH---HHHHHHHHHHHHHh
Q 002589 570 -----DVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRRF---SFFSRAALELLLQA 637 (904)
Q Consensus 570 -----~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps-~~F~r~---~iYg~~dd~~Rf---s~FsraaLe~Lrq~ 637 (904)
.+++.-.+.|.....++|...+.++++|+++...|+ .+|.|. .+|+. |...|+ .+|+.++++.++..
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~-D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG-DKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 001111234444557889988899999999975432 256665 46874 444555 99999999999888
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCC--------CCCCeEEEEecCCcccCC--CChhhhh--------hcCCcccc
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKG--------LNSARVCFTCHNFEYQGT--APAKELA--------SCGLDVQQ 699 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~g--------L~giPiV~TIHnl~~qG~--~p~~~L~--------~~GL~~~~ 699 (904)
+.+|||||+||||++++++.+.+.....+ ..+.++|||+||..++|. ++...+. ..|++...
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 89999999999999998554322210000 124779999999999997 8766553 35776655
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchh
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFL 779 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L 779 (904)
+... ..+....++.+|+++.|+.+||.|++||+.+++-... -++ .+.+.++....++..|.||||+..|.|.+++.+
T Consensus 239 ~~~~-~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~-l~~-~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l 315 (601)
T TIGR02094 239 LLAL-GRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRK-MWQ-FLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDL 315 (601)
T ss_pred HHhh-hhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHH-HHH-hhhhhcccccCCccceeCCccccccCCHHHHHH
Confidence 4321 1221101357999999999999999999999873221 111 122333334567999999999999999999999
Q ss_pred hhcccccc----------------------ccchhhhHHHHHH---------------------HcCCCCCCCCCcEEEE
Q 002589 780 KVQYNAND----------------------LQGKAENKESIRK---------------------HLGLSSADARKPLVGC 816 (904)
Q Consensus 780 ~~~ys~dd----------------------l~gK~~~K~aLRk---------------------~LGL~~~d~d~plVgf 816 (904)
..+|..++ +.+|..||.+|.+ .+|++. +++.|+++|
T Consensus 316 ~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~-dpd~~~ig~ 394 (601)
T TIGR02094 316 YERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFL-DPDVLTIGF 394 (601)
T ss_pred HHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhcccc-CCCCcEEEE
Confidence 99998877 4789999999987 466653 678899999
Q ss_pred EecccCccCHHHHHHHHHHhhc------CCcEEEEEecCCccc-----ccH--------------------------HHH
Q 002589 817 ITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPH-----IQV--------------------------YPI 859 (904)
Q Consensus 817 VGRL~~qKGIdlLIeAiarLle------~nvqLVLVGdGp~~~-----lek--------------------------e~L 859 (904)
|+|++.+||++++++++.++.+ .+++||++|.|...+ +.+ +.+
T Consensus 395 v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i 474 (601)
T TIGR02094 395 ARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYL 474 (601)
T ss_pred EEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHH
Confidence 9999999999999999998863 479999999986331 111 199
Q ss_pred HHhcCeEEE-cCC-CCCChHHHHHHc---cCCccccc
Q 002589 860 LLSSFSFLR-KHI-FNICNLYIKLGQ---GGDLTVNN 891 (904)
Q Consensus 860 yAaADVfVl-PS~-~EpFGLv~LEAM---g~gl~V~~ 891 (904)
+++||++++ ||+ +||||+++|.|| |+.++|.|
T Consensus 475 ~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D 511 (601)
T TIGR02094 475 VSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD 511 (601)
T ss_pred hhhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc
Confidence 999999999 999 999999999999 45577777
No 10
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=1.4e-36 Score=321.63 Aligned_cols=230 Identities=43% Similarity=0.758 Sum_probs=171.0
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--cccccccceeeecccCCc-----cccce
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRALDVVVESYFDGR-----LFKNK 585 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~--v~~L~~l~i~v~s~fdG~-----~~~~~ 585 (904)
||+|+++|++|++++||+|+++.+|+++|+++||+|.||+|.|++..... ...+..+.. .+.+. .+.++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~ 76 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSV----PFGGPVPVGVWYEVR 76 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-----STTCEEEEE----EE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecc----ccccccccccceEEE
Confidence 79999999999999999999999999999999999999999997654332 111111110 01110 14578
Q ss_pred eeeeeeCCeeEEEeCCCCCCcccccCCCCCC-----CcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHH
Q 002589 586 VWVSTIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWD 660 (904)
Q Consensus 586 V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~-----~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~ 660 (904)
+|.....|+++|+++++ .||.|+.+|+. .|+..||++|++++++++++.+.+|||||||||+++++|.+++.
T Consensus 77 v~~~~~~~v~v~~i~~~---~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~ 153 (245)
T PF08323_consen 77 VYRYPVDGVPVYFIDNP---EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKE 153 (245)
T ss_dssp EEEEEETTEEEEEEESH---HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHH
T ss_pred EEEEEcCCccEEEecCh---hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhcc
Confidence 88888999999999864 38888889965 79999999999999999998778999999999999998555444
Q ss_pred hhccC-CCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHH
Q 002589 661 LYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEV 739 (904)
Q Consensus 661 ~ya~~-gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI 739 (904)
.+... .+.++|+|+||||..|||.++...+..+|+++..+...+.++ +++.+|+++.|+.+||+|+||||+|++++
T Consensus 154 ~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~---~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei 230 (245)
T PF08323_consen 154 RYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYE---FYGQINFLKAGIVYADKVTTVSPTYAREI 230 (245)
T ss_dssp CCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTE---ETTEEEHHHHHHHHSSEEEESSHHHHHHT
T ss_pred ccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccc---cccccCHHHHHHHhcCEeeeCCHHHHHHH
Confidence 43322 356799999999999999998877777898876554444443 67899999999999999999999999999
Q ss_pred HhhcCCCCccccc
Q 002589 740 RTSEGGQGLHSTL 752 (904)
Q Consensus 740 ~~~~~g~GL~~~L 752 (904)
.+..+|+||+++|
T Consensus 231 ~~~~~g~GL~~~l 243 (245)
T PF08323_consen 231 QTPEFGEGLEGLL 243 (245)
T ss_dssp TSHHHHTT-HHHH
T ss_pred hCcccCCChHHHh
Confidence 9988899998776
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.97 E-value=5.3e-30 Score=306.99 Aligned_cols=369 Identities=18% Similarity=0.207 Sum_probs=261.6
Q ss_pred eEEEEcCccC-----CCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCccc-cc---------------cccc----
Q 002589 513 HVIHIAAEMA-----PVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYD-RI---------------DDLR---- 567 (904)
Q Consensus 513 kILhIt~E~~-----P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~-~v---------------~~L~---- 567 (904)
.|+++|.||. |. ..||+|+...+-.++.+..|..+..|+-.|...--. .+ ..++
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 4449999983 65 689999999999999999999999998766532100 00 0000
Q ss_pred ----ccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCcchhh---HHHHHHHHHHHHHH
Q 002589 568 ----ALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQ 636 (904)
Q Consensus 568 ----~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps-~~F~r~---~iYg~~dd~~R---fs~FsraaLe~Lrq 636 (904)
+-.+.+.-.+.|.....+||...+.++++|+++...|. .+|.|. .+|+. |+..| +.+|+.+.++.++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-DQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 00011122234445568899998999999999976542 245665 47875 56778 58999999999988
Q ss_pred hCCCccEEEEcCCchhhHHHH----HHHh--hccC---CCCCCeEEEEecCCcccC--CCChhhhh--------hcCCcc
Q 002589 637 AGKQPDIIHCHDWQTAFVAPL----YWDL--YVPK---GLNSARVCFTCHNFEYQG--TAPAKELA--------SCGLDV 697 (904)
Q Consensus 637 ~g~kPDIIHaHdW~talvapL----~~~~--ya~~---gL~giPiV~TIHnl~~qG--~~p~~~L~--------~~GL~~ 697 (904)
++.+|||||+||||++++++- +... +... ...+..+|||+|+..++| .+|...+. ..|++.
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 888999999999999998541 2221 1000 012578999999999999 78876553 256766
Q ss_pred cccCCccccccc-ccccchhhhhHHhhhcCEEEEcCHHH---HHHHHhh-cCCCCcccccccCCCeEEEEecCccCCCCC
Q 002589 698 QQLNRPDRMQDN-SAHDRINPLKGAIVFSNIVTTVSPSY---AQEVRTS-EGGQGLHSTLNFHSKKFVGILNGIDTDAWN 772 (904)
Q Consensus 698 ~~l~~~drLqd~-~~~~~in~lK~ai~~AD~VItVS~sy---aeeI~~~-~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~ 772 (904)
..+... .++.+ -.++.+|+++.|+.+|+.|++||+.+ ++++..+ ..+++ ....++..|.||||+..|.
T Consensus 325 ~~~~~l-g~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p------~~~~~i~~ITNGVh~~~W~ 397 (778)
T cd04299 325 DRFLAL-GRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFP------VEEVPIGHVTNGVHVPTWV 397 (778)
T ss_pred HHHhhh-ccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCC------cccCceeceeCCcchhhhc
Confidence 554322 12210 01356899999999999999999998 6665442 11222 2346799999999999998
Q ss_pred -CCccchhhhccc------------------ccc---ccchhhhHHHHHHHc---------------------CCCCCCC
Q 002589 773 -PATDTFLKVQYN------------------AND---LQGKAENKESIRKHL---------------------GLSSADA 809 (904)
Q Consensus 773 -P~~d~~L~~~ys------------------~dd---l~gK~~~K~aLRk~L---------------------GL~~~d~ 809 (904)
|..+..+..... ..| +.+|..+|.+|.+.. |.+ .++
T Consensus 398 ~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~-ldp 476 (778)
T cd04299 398 APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDV-LDP 476 (778)
T ss_pred CHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCc-cCC
Confidence 877666533211 122 567888888775553 333 356
Q ss_pred CCcEEEEEecccCccCHHHHHHHHHHhhc------CCcEEEEEecCCccccc------------H---------------
Q 002589 810 RKPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPHIQ------------V--------------- 856 (904)
Q Consensus 810 d~plVgfVGRL~~qKGIdlLIeAiarLle------~nvqLVLVGdGp~~~le------------k--------------- 856 (904)
+.++|+|++|++.+||.+++++.+.++.+ .+++||++|.+...+.. +
T Consensus 477 d~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd 556 (778)
T cd04299 477 NVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYD 556 (778)
T ss_pred CccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCC
Confidence 78899999999999999999999888743 47999999997532110 0
Q ss_pred ----HHHHHhcCeEEEcCC--CCCChHHHHHHc---cCCccccc
Q 002589 857 ----YPILLSSFSFLRKHI--FNICNLYIKLGQ---GGDLTVNN 891 (904)
Q Consensus 857 ----e~LyAaADVfVlPS~--~EpFGLv~LEAM---g~gl~V~~ 891 (904)
+.++++||+++.||+ +||||++.|.|| |+.++|.|
T Consensus 557 ~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlD 600 (778)
T cd04299 557 MALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLD 600 (778)
T ss_pred HHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeeccc
Confidence 199999999999999 999999999999 44566666
No 12
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.97 E-value=1e-28 Score=280.24 Aligned_cols=303 Identities=17% Similarity=0.224 Sum_probs=187.2
Q ss_pred CCCcHHHHHHHHHHHHHHCCC--eEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCC
Q 002589 526 KVGGLGDVVAGLGKALQKKGH--LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHH 603 (904)
Q Consensus 526 kvGGLg~vV~~LarAL~k~GH--eV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~ 603 (904)
.+||+++++.+|+++|.++|| +|+|+|+.++...... . +.. .+.....|++++.++..
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~--~-----------~~~------~~~~~~~gv~v~r~~~~- 83 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP--D-----------YAQ------PIERIAPGARIVRLPFG- 83 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC--c-----------cCC------CeeEeCCCcEEEEecCC-
Confidence 479999999999999999998 9999997654211000 0 000 01223578888877521
Q ss_pred CCcccccCCCCCCCcchhh-HHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCccc
Q 002589 604 PDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQ 682 (904)
Q Consensus 604 Ps~~F~r~~iYg~~dd~~R-fs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~q 682 (904)
+ ..|....++.. +..|...+..++++.+.+|||||+|+|.+++++.++.. ..++|+|+|+|+....
T Consensus 84 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~------~~~~p~V~t~H~~~~~ 150 (439)
T TIGR02472 84 P-------RRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSR------LLGVPLIFTGHSLGRE 150 (439)
T ss_pred C-------CCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHH------HhCCCEEEecccccch
Confidence 1 11111011111 23455666677765445799999999987776443332 2478999999975321
Q ss_pred CCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEE
Q 002589 683 GTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGI 762 (904)
Q Consensus 683 G~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VI 762 (904)
. ...+...|.....+. .+ .....++...+.++..+|.|+++|+....+......+ .++.|+.+|
T Consensus 151 ~---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~--------~~~~ki~vI 214 (439)
T TIGR02472 151 K---RRRLLAAGLKPQQIE---KQ--YNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDS--------YQPERMQVI 214 (439)
T ss_pred h---hhhcccCCCChhhhh---hh--cchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccC--------CCccceEEE
Confidence 0 001111111111100 00 0012223446678889999999997655443321111 356899999
Q ss_pred ecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhh--cCC
Q 002589 763 LNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--ELG 840 (904)
Q Consensus 763 PNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLl--e~n 840 (904)
|||||++.|.|..... .....+..+ +.++.+ ++.++|+|+||+.+.||+++|++|+..+. ...
T Consensus 215 pnGvd~~~f~~~~~~~-----------~~~~~~~~~-~~~~~~---~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~ 279 (439)
T TIGR02472 215 PPGVDLSRFYPPQSSE-----------ETSEIDNLL-APFLKD---PEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEM 279 (439)
T ss_pred CCCcChhhcCCCCccc-----------cchhHHHHH-Hhhccc---cCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhh
Confidence 9999999998743110 001112223 334443 25679999999999999999999998643 223
Q ss_pred cEEE-EEecCCccc-cc------------------------------HH---HHHHhc----CeEEEcCCCCCChHHHHH
Q 002589 841 GQFI-LLGSSPVPH-IQ------------------------------VY---PILLSS----FSFLRKHIFNICNLYIKL 881 (904)
Q Consensus 841 vqLV-LVGdGp~~~-le------------------------------ke---~LyAaA----DVfVlPS~~EpFGLv~LE 881 (904)
.+++ ++|+|+... ++ .+ .+|++| |+||+||.+|+||++++|
T Consensus 280 ~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lE 359 (439)
T TIGR02472 280 ANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLE 359 (439)
T ss_pred ccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHH
Confidence 4444 578876421 10 01 678877 999999999999999999
Q ss_pred HccCCcccccC
Q 002589 882 GQGGDLTVNNN 892 (904)
Q Consensus 882 AMg~gl~V~~~ 892 (904)
||++|+||+..
T Consensus 360 Ama~G~PvV~s 370 (439)
T TIGR02472 360 AAACGLPIVAT 370 (439)
T ss_pred HHHhCCCEEEe
Confidence 99999999643
No 13
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.96 E-value=2.6e-28 Score=291.95 Aligned_cols=364 Identities=15% Similarity=0.129 Sum_probs=214.1
Q ss_pred HHhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCcc----CCC---cCCCcHHHHHHHHHHHH--------HHCCC----
Q 002589 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEM----APV---AKVGGLGDVVAGLGKAL--------QKKGH---- 546 (904)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIt~E~----~P~---akvGGLg~vV~~LarAL--------~k~GH---- 546 (904)
.++-+..|...|..|++..... |||++|+.+. .|. ..+||..+||.+|+++| +++||
T Consensus 234 ~~~~~~p~~~~~e~f~~~~p~~----~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~ 309 (784)
T TIGR02470 234 DDLLEAPDPSVLEAFLGRIPMV----FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITP 309 (784)
T ss_pred HHHHhCCChhHHHHHHhhCCcc----ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3556777777777776654433 8999999987 232 12699999999999985 68999
Q ss_pred eEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhH-HH
Q 002589 547 LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRF-SF 625 (904)
Q Consensus 547 eV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rf-s~ 625 (904)
+|+|+|...+..... .. ..+++. ....+|+.+..++.. |.....- +-|-...+.+.+ ..
T Consensus 310 ~V~I~TR~~~~~~~~---~~---~~~~e~------------~~~~~~~~I~rvp~g-~~~~~~~-~~~i~k~~l~p~l~~ 369 (784)
T TIGR02470 310 KILIVTRLIPDAEGT---TC---NQRLEK------------VYGTEHAWILRVPFR-TENGIIL-RNWISRFEIWPYLET 369 (784)
T ss_pred eEEEEecCCCCcccc---cc---cccccc------------ccCCCceEEEEecCC-CCccccc-ccccCHHHHHHHHHH
Confidence 777998764421100 00 000000 001245555555421 1000000 001111222222 34
Q ss_pred HHHHHHHHHH-HhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcc
Q 002589 626 FSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (904)
Q Consensus 626 FsraaLe~Lr-q~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~d 704 (904)
|...+...++ +.+.+|||||+|.|.+++++.++... .++|.|+|.|.+..... ...|..+..
T Consensus 370 f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~------lgVP~v~t~HsL~~~K~------~~~g~~~~~----- 432 (784)
T TIGR02470 370 FAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARK------LGVTQCTIAHALEKTKY------PDSDIYWQE----- 432 (784)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHh------cCCCEEEECCcchhhcc------ccccccccc-----
Confidence 6666666555 33568999999999999986544332 58999999998742110 011111100
Q ss_pred cccc-cccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCC---------cccc---cccCCCeEEEEecCccCCCC
Q 002589 705 RMQD-NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG---------LHST---LNFHSKKFVGILNGIDTDAW 771 (904)
Q Consensus 705 rLqd-~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~G---------L~~~---L~~~~~Ki~VIPNGID~d~F 771 (904)
+++ +.+..++.....++..||.|||.|.............+| |..+ +..++.|+.+||+|+|.+.|
T Consensus 433 -~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF 511 (784)
T TIGR02470 433 -FEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIY 511 (784)
T ss_pred -chhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhc
Confidence 000 001112223446788899999999743221111001111 1111 11256799999999999999
Q ss_pred CCCccchhh-hccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhh--cCCcEEEEEec
Q 002589 772 NPATDTFLK-VQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--ELGGQFILLGS 848 (904)
Q Consensus 772 ~P~~d~~L~-~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLl--e~nvqLVLVGd 848 (904)
.|.+...-. .... ..+..-.-++...++.+|+.. ++++|+|++|||+.++||++.|++|+.++. ..+++|+|+|+
T Consensus 512 ~P~~~~~~r~~~~~-~~ie~ll~~~~~~~~~~G~l~-d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGG 589 (784)
T TIGR02470 512 FPYSDKEKRLTNLH-PEIEELLFSLEDNDEHYGYLK-DPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAG 589 (784)
T ss_pred CCCCchhhhhhhhh-cchhhhccchhhHHHHhCCCC-CCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeC
Confidence 885432100 0000 000000113455678888742 457899999999999999999999998764 34689999998
Q ss_pred CCcc----------cccH------H--------------------HHHH----hcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 849 SPVP----------HIQV------Y--------------------PILL----SSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 849 Gp~~----------~lek------e--------------------~LyA----aADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
|+.. .+++ + .+|+ ++|+||+||.+||||+|++|||++|+|
T Consensus 590 g~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlP 669 (784)
T TIGR02470 590 KLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLP 669 (784)
T ss_pred CcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCC
Confidence 6421 0000 0 3443 357999999999999999999999999
Q ss_pred cccCC
Q 002589 889 VNNNC 893 (904)
Q Consensus 889 V~~~v 893 (904)
|+...
T Consensus 670 VVAT~ 674 (784)
T TIGR02470 670 TFATR 674 (784)
T ss_pred EEEcC
Confidence 86433
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.96 E-value=3.8e-28 Score=269.24 Aligned_cols=297 Identities=17% Similarity=0.180 Sum_probs=192.9
Q ss_pred EEEEcCccCCCc-----CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeee
Q 002589 514 VIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (904)
Q Consensus 514 ILhIt~E~~P~a-----kvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~ 588 (904)
|++++....|.. ..||+++++.+|+++|.++||+|+|+++........ . .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~-------------------~ 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP------V-------------------V 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------c-------------------c
Confidence 567777766642 269999999999999999999999999864321100 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHH-HHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCC
Q 002589 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (904)
Q Consensus 589 g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaL-e~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL 667 (904)
...+|+.++.++.. .+.. .+...-...+..|....+ .++++...+|||||+|+|.+++++.++.. .
T Consensus 56 ~~~~~~~v~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~------~ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG----PYEG---LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRD------R 122 (405)
T ss_pred ccCCCcEEEEecCC----Cccc---CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHH------h
Confidence 11356666655421 0110 000000011122333333 34443345899999999887765433332 2
Q ss_pred CCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCC
Q 002589 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 747 (904)
Q Consensus 668 ~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~G 747 (904)
.++|+|+|+|++.... ...+..... +.. .....+.+..+..+|.++++|+...+.+... ++
T Consensus 123 ~~~p~v~t~h~~~~~~---~~~~~~~~~-------~~~------~~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~-~~-- 183 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVK---NAALADGDT-------PEP------EARRIGEQQLVDNADRLIANTDEEARDLVRH-YD-- 183 (405)
T ss_pred cCCCEEEeccchHHHH---HHhccCCCC-------Cch------HHHHHHHHHHHHhcCeEEECCHHHHHHHHHH-cC--
Confidence 4789999999863110 000000000 000 0011123456788999999999888877642 22
Q ss_pred cccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHH
Q 002589 748 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 827 (904)
Q Consensus 748 L~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGId 827 (904)
.++.++.+||||+|.+.|.|.. +...++++|++. +.++|+|+||+.+.||++
T Consensus 184 ------~~~~ki~vi~ngvd~~~~~~~~-------------------~~~~~~~~~~~~---~~~~i~~~G~l~~~K~~~ 235 (405)
T TIGR03449 184 ------ADPDRIDVVAPGADLERFRPGD-------------------RATERARLGLPL---DTKVVAFVGRIQPLKAPD 235 (405)
T ss_pred ------CChhhEEEECCCcCHHHcCCCc-------------------HHHHHHhcCCCC---CCcEEEEecCCCcccCHH
Confidence 2457899999999998886531 234567788863 568999999999999999
Q ss_pred HHHHHHHHhhcC--C--cEEEEEecCC-----cc-cccH----------------------HHHHHhcCeEEEcCCCCCC
Q 002589 828 LIRHAIYRTLEL--G--GQFILLGSSP-----VP-HIQV----------------------YPILLSSFSFLRKHIFNIC 875 (904)
Q Consensus 828 lLIeAiarLle~--n--vqLVLVGdGp-----~~-~lek----------------------e~LyAaADVfVlPS~~EpF 875 (904)
.+++|+..+.+. + ++|+|+|++. .. .+++ ..+|+.||++|+||..|+|
T Consensus 236 ~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~ 315 (405)
T TIGR03449 236 VLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESF 315 (405)
T ss_pred HHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCc
Confidence 999999998652 3 8999999632 11 1111 1899999999999999999
Q ss_pred hHHHHHHccCCcccccCCCc
Q 002589 876 NLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 876 GLv~LEAMg~gl~V~~~v~~ 895 (904)
|++++|||++|+||+....|
T Consensus 316 g~~~lEAma~G~Pvi~~~~~ 335 (405)
T TIGR03449 316 GLVAMEAQACGTPVVAARVG 335 (405)
T ss_pred ChHHHHHHHcCCCEEEecCC
Confidence 99999999999999654433
No 15
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.96 E-value=5.2e-28 Score=294.60 Aligned_cols=351 Identities=16% Similarity=0.132 Sum_probs=208.9
Q ss_pred CCCCCCeEEEEcCccCCC---------cCCCcHHHHHHHHHHHHHHCC--CeEEEEeeCCCCCc----cc-ccccccccc
Q 002589 507 SISSGLHVIHIAAEMAPV---------AKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQ----YD-RIDDLRALD 570 (904)
Q Consensus 507 ~~~~~MkILhIt~E~~P~---------akvGGLg~vV~~LarAL~k~G--HeV~VItP~y~~l~----~~-~v~~L~~l~ 570 (904)
.+.++|.|++|+..-.|- +-+||...||.+||++|+++| |+|+|+|....... +. .++.+...+
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 346789999999765431 347999999999999999999 89999997643210 00 000010000
Q ss_pred eeeecccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhh-HHHHHHHHHHHHHHh------------
Q 002589 571 VVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQA------------ 637 (904)
Q Consensus 571 i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~R-fs~FsraaLe~Lrq~------------ 637 (904)
.++- .-..+..+|+.++.|+. .|. ..|-....++. ..-|...++.++.+.
T Consensus 245 ------~~~~----~~~~~~~~g~rIvRip~-GP~------~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 245 ------SEND----GDEMGESSGAYIIRIPF-GPR------DKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ------cccc----cccccCCCCeEEEEecc-CCC------CCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 0000 00112346888877763 121 11222222222 234677777766531
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCC-cccccCCcccccccccccchh
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGL-DVQQLNRPDRMQDNSAHDRIN 716 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL-~~~~l~~~drLqd~~~~~~in 716 (904)
+..|||||+|+|.++.++.++.. ..++|+|+|.|.+. ......+...|. +...+. ..+....++.
T Consensus 308 ~~~pDvIHaHyw~sG~aa~~L~~------~lgVP~V~T~HSLg---r~K~~~ll~~g~~~~~~~~-----~~y~~~~Ri~ 373 (1050)
T TIGR02468 308 PVWPYVIHGHYADAGDSAALLSG------ALNVPMVLTGHSLG---RDKLEQLLKQGRMSKEEIN-----STYKIMRRIE 373 (1050)
T ss_pred CCCCCEEEECcchHHHHHHHHHH------hhCCCEEEECccch---hhhhhhhcccccccccccc-----cccchHHHHH
Confidence 12499999999999998654433 25899999999863 110000111111 000000 0011234566
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCC--Ccccccc-----------cCCCeEEEEecCccCCCCCCCccchhhhcc
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ--GLHSTLN-----------FHSKKFVGILNGIDTDAWNPATDTFLKVQY 783 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~--GL~~~L~-----------~~~~Ki~VIPNGID~d~F~P~~d~~L~~~y 783 (904)
.+..++..||.|||+|+..++++...+.+. +|...|. ....++.|||||||++.|.|.....-....
T Consensus 374 ~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~ 453 (1050)
T TIGR02468 374 AEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETE 453 (1050)
T ss_pred HHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhc
Confidence 778899999999999999988876532110 0100000 113489999999999999985321000000
Q ss_pred cccc--ccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc----CCcEEEEEecCCccc----
Q 002589 784 NAND--LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE----LGGQFILLGSSPVPH---- 853 (904)
Q Consensus 784 s~dd--l~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle----~nvqLVLVGdGp~~~---- 853 (904)
...+ ..........+++.+ .. ++.|+|+|+||+.++||++.||+|+..+.. .++. +|+|+|+...
T Consensus 454 ~~~~~~~~~~~~~~~~l~r~~-~~---pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~ 528 (1050)
T TIGR02468 454 GNEEHPAKPDPPIWSEIMRFF-TN---PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSS 528 (1050)
T ss_pred ccccccccccchhhHHHHhhc-cc---CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhc
Confidence 0000 000000112344333 33 367899999999999999999999998863 1444 4668765311
Q ss_pred --------ccH--------------------H--HHHHhc----CeEEEcCCCCCChHHHHHHccCCcccccCC
Q 002589 854 --------IQV--------------------Y--PILLSS----FSFLRKHIFNICNLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 854 --------lek--------------------e--~LyAaA----DVfVlPS~~EpFGLv~LEAMg~gl~V~~~v 893 (904)
+.. + .+|+.| |+||+||.+||||++++|||++|+||+...
T Consensus 529 ~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASd 602 (1050)
T TIGR02468 529 GSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATK 602 (1050)
T ss_pred cchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeC
Confidence 000 0 788877 699999999999999999999999996543
No 16
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.96 E-value=6.8e-28 Score=264.06 Aligned_cols=284 Identities=20% Similarity=0.236 Sum_probs=189.5
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++|+..|+|. ..||.+.++.+|+++|.+. |+|+|++...+.. ..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~-------------------------------~~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF-------------------------------DS 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh-------------------------------cC
Confidence 8999999998885 4699999999999999987 8888887542210 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.|++++.+.+. .. ....... +..+...+ . +.....+|||||+|+|.+++++. +... +.++|
T Consensus 48 ~~~~~~~~~~~------~~--~~~~~~~---~~~~~~~~-~-~~~~~~~~divh~~~~~~~~~~~-~~~~-----~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPW------SE--LKEANKA---LGTFSVDL-A-MANDPVDADVVHSHTWYTFLAGH-LAKK-----LYDKP 108 (388)
T ss_pred CCeEEEEecCh------hh--ccchhhh---hhhhhHHH-H-HhhCCCCCCeEeecchhhhhHHH-HHHH-----hcCCC
Confidence 23444433210 00 0000000 01111111 1 11123479999999988776532 2221 35899
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+|+|+......+..... ..+. .....+.+.++..+|.|+++|+.+++.+.....+
T Consensus 109 ~v~~~h~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~------ 165 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQL-GGGY----------------KLSSWAEKTAIEAADRVIAVSGGMREDILKYYPD------ 165 (388)
T ss_pred EEEEeeccccccccccccc-ccch----------------hHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCC------
Confidence 9999998742211110000 0000 0001234667788999999999988887653211
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
....++.+||||+|.+.|.|.. +..+++++|++. +.++|+|+||+.+.||++.+++
T Consensus 166 --~~~~~i~vi~ng~~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~i~~~Grl~~~Kg~~~li~ 221 (388)
T TIGR02149 166 --LDPEKVHVIYNGIDTKEYKPDD-------------------GNVVLDRYGIDR---SRPYILFVGRITRQKGVPHLLD 221 (388)
T ss_pred --CCcceEEEecCCCChhhcCCCc-------------------hHHHHHHhCCCC---CceEEEEEcccccccCHHHHHH
Confidence 2357899999999998886631 345677888863 5689999999999999999999
Q ss_pred HHHHhhcCCcEEEEEecCCccc-----cc---------------------H---HHHHHhcCeEEEcCCCCCChHHHHHH
Q 002589 832 AIYRTLELGGQFILLGSSPVPH-----IQ---------------------V---YPILLSSFSFLRKHIFNICNLYIKLG 882 (904)
Q Consensus 832 AiarLle~nvqLVLVGdGp~~~-----le---------------------k---e~LyAaADVfVlPS~~EpFGLv~LEA 882 (904)
|+..+. .+++++++|+|+... ++ . ..+|++||+||+||.+|+||++++||
T Consensus 222 a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA 300 (388)
T TIGR02149 222 AVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEA 300 (388)
T ss_pred HHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHH
Confidence 999885 478899988765321 00 0 18999999999999999999999999
Q ss_pred ccCCcccccCCCc
Q 002589 883 QGGDLTVNNNCEP 895 (904)
Q Consensus 883 Mg~gl~V~~~v~~ 895 (904)
|++|+||+....|
T Consensus 301 ~a~G~PvI~s~~~ 313 (388)
T TIGR02149 301 MACGTPVVASATG 313 (388)
T ss_pred HHcCCCEEEeCCC
Confidence 9999999654433
No 17
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.96 E-value=3.9e-28 Score=270.63 Aligned_cols=279 Identities=19% Similarity=0.219 Sum_probs=186.2
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..|.|. .||.+.++..|+++|.++||+|+|+++.++..... .....
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------------~~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI--------------------------RYLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc--------------------------ccccC
Confidence 699999999995 79999999999999999999999999875421000 00124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|++++.++.. .+.+...+. .+..+...+...+. ..+|||||+|++...++...++.. ...++|+
T Consensus 53 ~i~v~~~p~~----~~~~~~~~~------~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~~----~~~~~~~ 116 (398)
T cd03796 53 GLKVYYLPFV----VFYNQSTLP------TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLHA----RTMGLKT 116 (398)
T ss_pred ceeEEEecce----eccCCcccc------chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHh----hhcCCcE
Confidence 5666665421 011111110 11111122223333 358999999997654321111111 1357999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|+|.|+... ...... . ..-.+.+..+..+|.++++|+...+.+... .+
T Consensus 117 v~t~h~~~~--~~~~~~--------~--------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------- 164 (398)
T cd03796 117 VFTDHSLFG--FADASS--------I--------------HTNKLLRFSLADVDHVICVSHTSKENTVLR-AS------- 164 (398)
T ss_pred EEEeccccc--ccchhh--------H--------------HhhHHHHHhhccCCEEEEecHhHhhHHHHH-hC-------
Confidence 999998521 000000 0 000123455678999999999877654331 11
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.++.++.+||||+|.+.|.|..+. . .++.++++|+||+.++||++.+++|
T Consensus 165 -~~~~k~~vi~ngvd~~~f~~~~~~--------------------------~---~~~~~~i~~~grl~~~Kg~~~li~a 214 (398)
T cd03796 165 -LDPERVSVIPNAVDSSDFTPDPSK--------------------------R---DNDKITIVVISRLVYRKGIDLLVGI 214 (398)
T ss_pred -CChhhEEEEcCccCHHHcCCCccc--------------------------C---CCCceEEEEEeccchhcCHHHHHHH
Confidence 245789999999999888764210 0 1255789999999999999999999
Q ss_pred HHHhhc--CCcEEEEEecCCccc-ccH----------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCc
Q 002589 833 IYRTLE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 833 iarLle--~nvqLVLVGdGp~~~-lek----------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl 887 (904)
+..+.+ .+++|+|+|+|+... +.+ ..+|++||++|+||.+|+||++++|||++|+
T Consensus 215 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~ 294 (398)
T cd03796 215 IPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL 294 (398)
T ss_pred HHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC
Confidence 998864 489999999987432 110 1899999999999999999999999999999
Q ss_pred ccccCCCccc
Q 002589 888 TVNNNCEPWL 897 (904)
Q Consensus 888 ~V~~~v~~~l 897 (904)
||+....|-+
T Consensus 295 PVI~s~~gg~ 304 (398)
T cd03796 295 LVVSTRVGGI 304 (398)
T ss_pred CEEECCCCCc
Confidence 9965544433
No 18
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.96 E-value=3.5e-27 Score=263.54 Aligned_cols=305 Identities=16% Similarity=0.158 Sum_probs=196.3
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeC--CCCCcccccccccccceeeecccCCccccceeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK--YDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~--y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g 589 (904)
|||++++..|+|. .||++.++.+|+++|.+.||+|+|+||. |+...... + +.+.. ....
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~--~-----------~~~~~----~~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGE--G-----------YSAWR----YRRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCc--c-----------ccccc----ceee
Confidence 8999999989885 7999999999999999999999999975 22111000 0 00000 0112
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHH-HHHhCCCccEEEEcCCch--hhHHHHHHHhhccCC
Q 002589 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQT--AFVAPLYWDLYVPKG 666 (904)
Q Consensus 590 ~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~-Lrq~g~kPDIIHaHdW~t--alvapL~~~~ya~~g 666 (904)
..+|++++.++... ... ..+. .....+..|...+... ++....+|||||+|.+.. +++ .++...
T Consensus 62 ~~~~i~v~r~~~~~----~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~-~~~~~~----- 128 (412)
T PRK10307 62 SEGGVTVWRCPLYV----PKQ--PSGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPG-ARLLAR----- 128 (412)
T ss_pred ecCCeEEEEccccC----CCC--ccHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHH-HHHHHH-----
Confidence 24688888765210 000 0000 0011111222222222 222236899999998643 222 122221
Q ss_pred CCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCC
Q 002589 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 746 (904)
Q Consensus 667 L~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~ 746 (904)
..++|+|+++|++... .....|.....+ + ..-...+++.++..||.|+++|+..++.+.. . +
T Consensus 129 ~~~~~~v~~~~d~~~~------~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~-~-~- 190 (412)
T PRK10307 129 LSGARTWLHIQDYEVD------AAFGLGLLKGGK-----V----ARLATAFERSLLRRFDNVSTISRSMMNKARE-K-G- 190 (412)
T ss_pred hhCCCEEEEeccCCHH------HHHHhCCccCcH-----H----HHHHHHHHHHHHhhCCEEEecCHHHHHHHHH-c-C-
Confidence 2578999999986311 111111110000 0 0001124567788899999999999888764 2 1
Q ss_pred CcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCH
Q 002589 747 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 826 (904)
Q Consensus 747 GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGI 826 (904)
.++.++.+||||+|.+.|.|... ..+..+++.+|++. +.++|+|+||+.+.||+
T Consensus 191 -------~~~~~i~vi~ngvd~~~~~~~~~----------------~~~~~~~~~~~~~~---~~~~i~~~G~l~~~kg~ 244 (412)
T PRK10307 191 -------VAAEKVIFFPNWSEVARFQPVAD----------------ADVDALRAQLGLPD---GKKIVLYSGNIGEKQGL 244 (412)
T ss_pred -------CCcccEEEECCCcCHhhcCCCCc----------------cchHHHHHHcCCCC---CCEEEEEcCccccccCH
Confidence 24578999999999988876421 11345678889873 56899999999999999
Q ss_pred HHHHHHHHHhhc-CCcEEEEEecCCccc-ccH------------------H---HHHHhcCeEEEcCCCCCC----hHHH
Q 002589 827 HLIRHAIYRTLE-LGGQFILLGSSPVPH-IQV------------------Y---PILLSSFSFLRKHIFNIC----NLYI 879 (904)
Q Consensus 827 dlLIeAiarLle-~nvqLVLVGdGp~~~-lek------------------e---~LyAaADVfVlPS~~EpF----GLv~ 879 (904)
+.|++|+..+.+ .+++|+|+|+|+... +++ + .+|++||++|+||..|++ |...
T Consensus 245 ~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl 324 (412)
T PRK10307 245 ELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKL 324 (412)
T ss_pred HHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHH
Confidence 999999998854 369999999998542 111 0 899999999999999995 4557
Q ss_pred HHHccCCcccccC
Q 002589 880 KLGQGGDLTVNNN 892 (904)
Q Consensus 880 LEAMg~gl~V~~~ 892 (904)
+|||++|+||+..
T Consensus 325 ~eama~G~PVi~s 337 (412)
T PRK10307 325 TNMLASGRNVVAT 337 (412)
T ss_pred HHHHHcCCCEEEE
Confidence 9999999999664
No 19
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.96 E-value=4.3e-27 Score=268.69 Aligned_cols=286 Identities=15% Similarity=0.243 Sum_probs=184.3
Q ss_pred CCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeee
Q 002589 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (904)
Q Consensus 509 ~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~ 588 (904)
+++|||++++..+ |+...||++.++.+|+++|.++||+|+|+++..+. .. . +
T Consensus 56 ~~~mrI~~~~~~~-~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~----~-----------~----------- 107 (465)
T PLN02871 56 SRPRRIALFVEPS-PFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQ----E-----------F----------- 107 (465)
T ss_pred CCCceEEEEECCc-CCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Cc----c-----------c-----------
Confidence 7889999998543 33468999999999999999999999999976431 10 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCC
Q 002589 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (904)
Q Consensus 589 g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~ 668 (904)
.|+.++.+.. .+..++.. . . ..+. +...+...+++ .+|||||+|++.....+.+++.. ..
T Consensus 108 ---~g~~v~~~~~-~~~~~~~~--~-~-----~~~~-~~~~l~~~i~~--~kpDiIh~~~~~~~~~~~~~~ak-----~~ 167 (465)
T PLN02871 108 ---HGAKVIGSWS-FPCPFYQK--V-P-----LSLA-LSPRIISEVAR--FKPDLIHASSPGIMVFGALFYAK-----LL 167 (465)
T ss_pred ---cCceeeccCC-cCCccCCC--c-e-----eecc-CCHHHHHHHHh--CCCCEEEECCCchhHHHHHHHHH-----Hh
Confidence 1111111100 00001110 0 0 0000 11123344443 58999999985432222222221 24
Q ss_pred CCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 669 giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
++|+|+|+|+.... + ....+. .. + ......+.+.....+|.|+++|+..++.+... + .
T Consensus 168 ~ip~V~~~h~~~~~--~----~~~~~~--~~------~----~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~-~---~ 225 (465)
T PLN02871 168 CVPLVMSYHTHVPV--Y----IPRYTF--SW------L----VKPMWDIIRFLHRAADLTLVTSPALGKELEAA-G---V 225 (465)
T ss_pred CCCEEEEEecCchh--h----hhcccc--hh------h----HHHHHHHHHHHHhhCCEEEECCHHHHHHHHHc-C---C
Confidence 79999999975210 0 000000 00 0 00001234556678999999999998887652 1 1
Q ss_pred ccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHH
Q 002589 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 828 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdl 828 (904)
.+..++.+||||+|.+.|.|..+ +..+++.++.. .++.++|+|+||+.++||++.
T Consensus 226 -----~~~~kv~vi~nGvd~~~f~p~~~------------------~~~~~~~~~~~--~~~~~~i~~vGrl~~~K~~~~ 280 (465)
T PLN02871 226 -----TAANRIRVWNKGVDSESFHPRFR------------------SEEMRARLSGG--EPEKPLIVYVGRLGAEKNLDF 280 (465)
T ss_pred -----CCcCeEEEeCCccCccccCCccc------------------cHHHHHHhcCC--CCCCeEEEEeCCCchhhhHHH
Confidence 23578999999999998877421 12234444322 125689999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEEecCCccc-ccH----------------H--HHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 829 IRHAIYRTLELGGQFILLGSSPVPH-IQV----------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 829 LIeAiarLle~nvqLVLVGdGp~~~-lek----------------e--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
+++|+.++. +++|+|+|+|+... +++ + .+|++||+||+||.+|+||++++|||++|+||
T Consensus 281 li~a~~~~~--~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PV 358 (465)
T PLN02871 281 LKRVMERLP--GARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPV 358 (465)
T ss_pred HHHHHHhCC--CcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCE
Confidence 999998874 79999999998542 211 1 89999999999999999999999999999999
Q ss_pred cc
Q 002589 890 NN 891 (904)
Q Consensus 890 ~~ 891 (904)
+.
T Consensus 359 I~ 360 (465)
T PLN02871 359 VA 360 (465)
T ss_pred EE
Confidence 64
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=3e-26 Score=248.35 Aligned_cols=277 Identities=21% Similarity=0.168 Sum_probs=183.8
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++++. |. .||.+.++.+|+++|.++||+|+|++...+..... . .
T Consensus 1 mki~~~~~---p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~---~-------------------------~ 47 (371)
T cd04962 1 MKIGIVCY---PT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE---Y-------------------------S 47 (371)
T ss_pred CceeEEEE---eC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh---h-------------------------c
Confidence 79999973 53 69999999999999999999999998653311000 0 0
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.++.++.++.. .+.... +.. .. ......+.+++. ..+|||||+|.+....++.++...+. +..++|
T Consensus 48 ~~~~~~~~~~~----~~~~~~-~~~----~~-~~~~~~l~~~i~--~~~~divh~~~~~~~~~~~~~~~~~~--~~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYPLFQ-YPP----YD-LALASKIAEVAK--RYKLDLLHVHYAVPHAVAAYLAREIL--GKKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccchhh-cch----hH-HHHHHHHHHHHh--cCCccEEeecccCCccHHHHHHHHhc--CcCCCc
Confidence 11222211110 000000 000 00 112233444444 35899999998765433233222211 113799
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+|+|+..+.- .+... ....+.+.++..+|.|+++|+..++.+... +
T Consensus 114 ~i~~~h~~~~~~---------~~~~~---------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~------- 161 (371)
T cd04962 114 VVTTLHGTDITL---------VGQDP---------------SFQPATRFSIEKSDGVTAVSESLRQETYEL-F------- 161 (371)
T ss_pred EEEEEcCCcccc---------ccccc---------------cchHHHHHHHhhCCEEEEcCHHHHHHHHHh-c-------
Confidence 999999764210 00000 011234667788999999999888777642 2
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
....++.+||||+|...|.|.. +...+++++++. +.++++|+||+.+.||++.+++
T Consensus 162 --~~~~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 162 --DITKEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAPE---GEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred --CCcCCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCCC---CCeEEEEecccccccCHHHHHH
Confidence 1346899999999987765532 123456777763 5688999999999999999999
Q ss_pred HHHHhhcC-CcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 832 AIYRTLEL-GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 832 AiarLle~-nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
|+..+.+. +++++++|+|+... +++ ..+|+.||++|+||.+|+||++++|||++|+||
T Consensus 218 a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~Pv 297 (371)
T cd04962 218 IFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPV 297 (371)
T ss_pred HHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCE
Confidence 99988753 78999999987532 110 199999999999999999999999999999999
Q ss_pred cc
Q 002589 890 NN 891 (904)
Q Consensus 890 ~~ 891 (904)
+.
T Consensus 298 I~ 299 (371)
T cd04962 298 VA 299 (371)
T ss_pred EE
Confidence 54
No 21
>PLN00142 sucrose synthase
Probab=99.94 E-value=3.8e-26 Score=273.73 Aligned_cols=359 Identities=14% Similarity=0.155 Sum_probs=209.7
Q ss_pred HHhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccC--C-----CcCCCcHHHHHHHHH--------HHHHHCCCeEE-
Q 002589 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--P-----VAKVGGLGDVVAGLG--------KALQKKGHLVE- 549 (904)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIt~E~~--P-----~akvGGLg~vV~~La--------rAL~k~GHeV~- 549 (904)
.++-+..|...|..|++....- |+|++|+..-+ | ...+||..+||.+++ ++|+++||+|+
T Consensus 258 ~~~~~~p~~~~~e~f~~~~p~~----~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~ 333 (815)
T PLN00142 258 LDLLQAPDPSTLEKFLGRIPMV----FNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKP 333 (815)
T ss_pred HHHHhCCChhHHHHHHhhhhHh----HhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456677777777776554333 79999987653 2 124799999997655 67778999875
Q ss_pred ---EEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC-cccccCCCCCCCcchhhH-H
Q 002589 550 ---IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRGQFYGEHDDFRRF-S 624 (904)
Q Consensus 550 ---VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps-~~F~r~~iYg~~dd~~Rf-s 624 (904)
|+|...+..... ....+++. ....+|+.+..++. .|. ++.. ... ...+.+.+ .
T Consensus 334 ~v~i~TR~i~~~~~~------~~~~~~e~------------v~~~~~~~I~rvP~-g~~~~~l~--~~i-~ke~l~p~L~ 391 (815)
T PLN00142 334 QILIVTRLIPDAKGT------TCNQRLEK------------VSGTEHSHILRVPF-RTEKGILR--KWI-SRFDVWPYLE 391 (815)
T ss_pred eeEEEEeccCCccCC------cccCccee------------ccCCCceEEEecCC-CCCccccc--ccc-CHHHHHHHHH
Confidence 888654321100 00000000 00123455555442 111 0000 000 01111221 3
Q ss_pred HHHHHHHHHHH-HhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCc
Q 002589 625 FFSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRP 703 (904)
Q Consensus 625 ~FsraaLe~Lr-q~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~ 703 (904)
.|...+..++. ..+..|||||+|+|.++++|.++... .++|.|+|.|.+.-... ...|..+...
T Consensus 392 ~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~------~~~~~~~~~~--- 456 (815)
T PLN00142 392 TFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKY------PDSDIYWKKF--- 456 (815)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH------hCCCEEEEcccchhhhc------cccCCccccc---
Confidence 46666666653 34567999999999999986655443 58999999998741110 0111111100
Q ss_pred ccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHH------hhcCCC---Cccccc---ccCCCeEEEEecCccCCCC
Q 002589 704 DRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR------TSEGGQ---GLHSTL---NFHSKKFVGILNGIDTDAW 771 (904)
Q Consensus 704 drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~------~~~~g~---GL~~~L---~~~~~Ki~VIPNGID~d~F 771 (904)
+. .+.+..++.....++..||.||+.|......+. ..+.++ ||..++ .....|+.+||+|+|...|
T Consensus 457 e~--~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F 534 (815)
T PLN00142 457 DD--KYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIY 534 (815)
T ss_pred ch--hhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhc
Confidence 00 001122344566788899999999976543221 001010 111111 1224589999999999999
Q ss_pred CCCccch--hhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEe
Q 002589 772 NPATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLG 847 (904)
Q Consensus 772 ~P~~d~~--L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVG 847 (904)
.|..... +...++ .+....-++...++.+|+.. +++.|+|+++||+.++||++.|++|+.++.+ .+++|+|+|
T Consensus 535 ~P~~~~~~rl~~l~n--~I~~~l~~~~~~~e~lg~l~-~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVG 611 (815)
T PLN00142 535 FPYTEKQKRLTSLHP--SIEELLYSPEQNDEHIGYLK-DRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVG 611 (815)
T ss_pred CCCChHHhhHHhhcc--cchhhcCChHHHHHHhCCcc-CCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 8854211 110011 11111222344556788742 3467899999999999999999999998754 379999999
Q ss_pred cCCcc-------c------ccH-----------------------H---HHHH-hcCeEEEcCCCCCChHHHHHHccCCc
Q 002589 848 SSPVP-------H------IQV-----------------------Y---PILL-SSFSFLRKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 848 dGp~~-------~------lek-----------------------e---~LyA-aADVfVlPS~~EpFGLv~LEAMg~gl 887 (904)
+|..+ . +.. . .+|+ ++|+||+||.+||||+|++|||++|+
T Consensus 612 gg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl 691 (815)
T PLN00142 612 GFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL 691 (815)
T ss_pred CCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC
Confidence 87210 0 000 0 2333 57999999999999999999999999
Q ss_pred ccc
Q 002589 888 TVN 890 (904)
Q Consensus 888 ~V~ 890 (904)
||+
T Consensus 692 PVV 694 (815)
T PLN00142 692 PTF 694 (815)
T ss_pred CEE
Confidence 985
No 22
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.94 E-value=2.8e-25 Score=242.02 Aligned_cols=282 Identities=21% Similarity=0.299 Sum_probs=184.3
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCCc
Q 002589 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK 606 (904)
Q Consensus 527 vGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~ 606 (904)
.||++.++.+|+++|+++||+|+|+++........ . .....|+.++.++.. +..
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~---------------------~~~~~~~~~~~~~~~-~~~ 73 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPP----I---------------------VELAPGVRVVRVPAG-PAE 73 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCC----c---------------------cccccceEEEecccc-ccc
Confidence 68999999999999999999999998764321100 0 011245566555421 100
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCC
Q 002589 607 FFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAP 686 (904)
Q Consensus 607 ~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p 686 (904)
++.....+ ..+..|...+..+++....+|||||+|.|.++.++. .+.. ..++|+|+|+|+........
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~-~~~~-----~~~~~~i~~~h~~~~~~~~~ 141 (398)
T cd03800 74 YLPKEELW------PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVAL-LLAR-----RLGIPLVHTFHSLGAVKRRH 141 (398)
T ss_pred CCChhhcc------hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHH-HHHh-----hcCCceEEEeecccccCCcc
Confidence 11100011 111234555556665433489999999988776533 3222 24799999999864211000
Q ss_pred hhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCc
Q 002589 687 AKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI 766 (904)
Q Consensus 687 ~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGI 766 (904)
. .. ...+ .........+..+..||.++++|+...+.+... ++ .+..++.+||||+
T Consensus 142 ---~---~~-~~~~---------~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~--------~~~~~~~vi~ng~ 196 (398)
T cd03800 142 ---L---GA-ADTY---------EPARRIEAEERLLRAADRVIASTPQEAEELYSL-YG--------AYPRRIRVVPPGV 196 (398)
T ss_pred ---c---cc-cccc---------chhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHH-cc--------ccccccEEECCCC
Confidence 0 00 0000 011122344667888999999999887777652 21 2345689999999
Q ss_pred cCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEE
Q 002589 767 DTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFI 844 (904)
Q Consensus 767 D~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLV 844 (904)
|.+.|.|..+. ...++.++.+ ++.++|+|+||+.+.||++.+++|+..+.+ .+++|+
T Consensus 197 ~~~~~~~~~~~------------------~~~~~~~~~~---~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~ 255 (398)
T cd03800 197 DLERFTPYGRA------------------EARRARLLRD---PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLV 255 (398)
T ss_pred Cccceecccch------------------hhHHHhhccC---CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEE
Confidence 99888664211 0113444544 256899999999999999999999999875 379999
Q ss_pred EEecCCcccc-------c---H-----------------H--HHHHhcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 845 LLGSSPVPHI-------Q---V-----------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 845 LVGdGp~~~l-------e---k-----------------e--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
++|+|+.... + + + .+|+.||++++||.+|+||++++|||++|+||+..
T Consensus 256 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 256 IVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVAT 332 (398)
T ss_pred EEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEEC
Confidence 9998764210 0 0 1 78999999999999999999999999999999643
No 23
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.94 E-value=7.7e-26 Score=261.89 Aligned_cols=291 Identities=19% Similarity=0.190 Sum_probs=165.0
Q ss_pred EcCccCCCcCCCcHHHHHHHHHHHHHH-CCCeEEEEeeCCCCCcccccccccccceeeecccCC-ccccceeeeee--eC
Q 002589 517 IAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG-RLFKNKVWVST--IE 592 (904)
Q Consensus 517 It~E~~P~akvGGLg~vV~~LarAL~k-~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG-~~~~~~V~~g~--v~ 592 (904)
+++|..- ++||+-+++..=|+.+++ .|-++.+|.|.........++.+..-+..+.+.... ...+.+|..|+ ++
T Consensus 7 ~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 4555554 799999999999999885 889999999986522111121111100000000000 01234555554 57
Q ss_pred Cee-EEEeCCCCCCcccc--------------cC--CCCCCCcchhhHHHHHHHHHH-HHHH-hCCCccEEEEcCCchhh
Q 002589 593 GLP-VYFIEPHHPDKFFW--------------RG--QFYGEHDDFRRFSFFSRAALE-LLLQ-AGKQPDIIHCHDWQTAF 653 (904)
Q Consensus 593 GV~-V~fIdp~~Ps~~F~--------------r~--~iYg~~dd~~Rfs~FsraaLe-~Lrq-~g~kPDIIHaHdW~tal 653 (904)
|-| |.+++.. + +|+ .+ ..|+.+++...|+|.+..+++ +... ...++||+|+|+|+++.
T Consensus 85 G~P~viL~D~~-~--~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g~ 161 (590)
T cd03793 85 GYPKVVLFDIG-S--AAWKLDEWKGELWELCGIGSPEGDRETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAGV 161 (590)
T ss_pred CCCeEEEEeCc-h--hhhhHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHhH
Confidence 776 4455531 1 221 11 122223455444443333332 2222 24579999999999998
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCcccCCC-Chh-hhhhcCCcccccCCcccc-cccccccchhhhhHHhhhcCEEEE
Q 002589 654 VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA-PAK-ELASCGLDVQQLNRPDRM-QDNSAHDRINPLKGAIVFSNIVTT 730 (904)
Q Consensus 654 vapL~~~~ya~~gL~giPiV~TIHnl~~qG~~-p~~-~L~~~GL~~~~l~~~drL-qd~~~~~~in~lK~ai~~AD~VIt 730 (904)
+ .++++.. ..++|+|+|+|.+.+.+.. ... .+. ..+. .+ ..+.. .+.....+..+++.+...||.|||
T Consensus 162 a-~~~lK~~----~~~VptVfTtHAT~~GR~l~~g~~~~y-~~l~--~~-~~d~eA~~~~I~~r~~iE~~aa~~Ad~ftt 232 (590)
T cd03793 162 G-LPLLRKR----KVDVSTIFTTHATLLGRYLCAGNVDFY-NNLD--YF-DVDKEAGKRGIYHRYCIERAAAHCAHVFTT 232 (590)
T ss_pred H-HHHHHHh----CCCCCEEEEecccccccccccCCcccc-hhhh--hc-chhhhhhcccchHHHHHHHHHHhhCCEEEE
Confidence 6 4455432 2578999999987643210 000 000 0000 00 00100 011134556678899999999999
Q ss_pred cCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhcc-ccccccchhhhHHHHHHHcCCCCCCC
Q 002589 731 VSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQY-NANDLQGKAENKESIRKHLGLSSADA 809 (904)
Q Consensus 731 VS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~y-s~ddl~gK~~~K~aLRk~LGL~~~d~ 809 (904)
||+.++.++.. .+ ..++++ |||||+|.+.|.+..+. ...+. +...+ -...+..++.+++++.
T Consensus 233 VS~it~~E~~~-Ll--------~~~pd~--ViPNGid~~~f~~~~e~-~~~~~~~k~ki--~~f~~~~~~~~~~~~~--- 295 (590)
T cd03793 233 VSEITAYEAEH-LL--------KRKPDV--VLPNGLNVKKFSALHEF-QNLHAQSKEKI--NEFVRGHFYGHYDFDL--- 295 (590)
T ss_pred CChHHHHHHHH-Hh--------CCCCCE--EeCCCcchhhcccchhh-hhhhHHhhhhh--hHHHHHHHhhhcCCCC---
Confidence 99999999876 22 255666 99999999999764321 00000 00000 0011334677788763
Q ss_pred CCcEEEE-EecccC-ccCHHHHHHHHHHhhc
Q 002589 810 RKPLVGC-ITRLVP-QKGVHLIRHAIYRTLE 838 (904)
Q Consensus 810 d~plVgf-VGRL~~-qKGIdlLIeAiarLle 838 (904)
+.++++| +||+.. +||+|++|+|++++..
T Consensus 296 d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~ 326 (590)
T cd03793 296 DKTLYFFTAGRYEFSNKGADMFLEALARLNY 326 (590)
T ss_pred CCeEEEEEeeccccccCCHHHHHHHHHHHHH
Confidence 5577777 799998 9999999999999864
No 24
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.94 E-value=1.9e-25 Score=252.50 Aligned_cols=303 Identities=13% Similarity=0.075 Sum_probs=178.3
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
||||+|... ...||+|.++.+|++.|.++||+|.|+.-+........ . .
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~---~------------------------~ 49 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV---S------------------------H 49 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc---c------------------------c
Confidence 899999873 26799999999999999999999999987643221100 0 0
Q ss_pred CCee-EEEeCCCCC-------CcccccCCCCCCCcchhhHHHHH-HHHHHHHHHhCCCccEEEEcCCchhhHHH-HHHHh
Q 002589 592 EGLP-VYFIEPHHP-------DKFFWRGQFYGEHDDFRRFSFFS-RAALELLLQAGKQPDIIHCHDWQTAFVAP-LYWDL 661 (904)
Q Consensus 592 ~GV~-V~fIdp~~P-------s~~F~r~~iYg~~dd~~Rfs~Fs-raaLe~Lrq~g~kPDIIHaHdW~talvap-L~~~~ 661 (904)
.+++ ++.+.+... ...|++ ..+++ .....++.+ ..+|||||+|..+++++.. .+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNR------------DLFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcch------------hhcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 0100 111110000 001111 11111 222234433 5799999999877643321 11110
Q ss_pred --hccCCCCCCeEEEEecCCc-ccCCCCh--hh---hhhcCCcccccCCccccccc---ccccchhhhhHHhhhcCEEEE
Q 002589 662 --YVPKGLNSARVCFTCHNFE-YQGTAPA--KE---LASCGLDVQQLNRPDRMQDN---SAHDRINPLKGAIVFSNIVTT 730 (904)
Q Consensus 662 --ya~~gL~giPiV~TIHnl~-~qG~~p~--~~---L~~~GL~~~~l~~~drLqd~---~~~~~in~lK~ai~~AD~VIt 730 (904)
.......++|+|+|.|++. +.|.+.. .. -..|+-.+..-..|....+. .+..+....+.....++.+++
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~ 196 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFIS 196 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 0001125789999999974 5554432 11 11232211110001101110 011111122233344688999
Q ss_pred cCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCC
Q 002589 731 VSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADAR 810 (904)
Q Consensus 731 VS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d 810 (904)
+|..+++.+.. .+ ...++.+||||||++.+.+.... . ..+ .+ ++
T Consensus 197 ~S~~l~~~~~~-~~----------~~~~i~vI~NGid~~~~~~~~~~------~------------~~~----~~---~~ 240 (405)
T PRK10125 197 PSQHVADAFNS-LY----------GPGRCRIINNGIDMATEAILAEL------P------------PVR----ET---QG 240 (405)
T ss_pred cCHHHHHHHHH-Hc----------CCCCEEEeCCCcCcccccccccc------c------------ccc----cC---CC
Confidence 99999887653 22 23689999999998644332100 0 000 01 24
Q ss_pred CcEEEEEecc--cCccCHHHHHHHHHHhhcCCcEEEEEecCCccc---c-------cH---HHHHHhcCeEEEcCCCCCC
Q 002589 811 KPLVGCITRL--VPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH---I-------QV---YPILLSSFSFLRKHIFNIC 875 (904)
Q Consensus 811 ~plVgfVGRL--~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~~---l-------ek---e~LyAaADVfVlPS~~EpF 875 (904)
.++|+++||. .+.||++.+++|+..+. .+++|+|+|+|+... + .. ..+|++||+||+||.+|+|
T Consensus 241 ~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egf 319 (405)
T PRK10125 241 KPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNY 319 (405)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccC
Confidence 5789999994 36899999999999874 478999999875321 1 11 2899999999999999999
Q ss_pred hHHHHHHccCCcccccC-CCc
Q 002589 876 NLYIKLGQGGDLTVNNN-CEP 895 (904)
Q Consensus 876 GLv~LEAMg~gl~V~~~-v~~ 895 (904)
|++++|||++|+||+.. +.|
T Consensus 320 p~vilEAmA~G~PVVat~~gG 340 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA 340 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC
Confidence 99999999999999543 444
No 25
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.94 E-value=5.7e-25 Score=236.30 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=182.9
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+++++.+ ..||.+.++..++++|.+.||+|+++++........ ..+ ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~--~~~-----------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD--DEI-----------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH--HHH-----------------------HHc
Confidence 689999865 369999999999999999999999999874321000 000 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|++++.+++. . . .... +.+.+..+++ ..+|||||+|......+ +.++... .....+
T Consensus 52 ~~~~~~~~~~-----~----~-----~~~~---~~~~~~~~~~--~~~~Dvv~~~~~~~~~~-~~~~~~~----~~~~~~ 107 (358)
T cd03812 52 GGKIYYIPAR-----K----K-----NPLK---YFKKLYKLIK--KNKYDIVHVHGSSASGF-ILLAAKK----AGVKVR 107 (358)
T ss_pred CCeEEEecCC-----C----c-----cHHH---HHHHHHHHHh--cCCCCEEEEeCcchhHH-HHHHHhh----CCCCeE
Confidence 4444433211 0 0 0111 1222233333 36899999998765443 2222221 223446
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
+++.|+..+....... . . .. ..+.+.....+|.++++|+..++.+...
T Consensus 108 v~~~~~~~~~~~~~~~----------~------~----~~--~~~~~~~~~~~~~~i~~s~~~~~~~~~~---------- 155 (358)
T cd03812 108 IAHSHNTSDSHDKKKK----------I------L----KY--KVLRKLINRLATDYLACSEEAGKWLFGK---------- 155 (358)
T ss_pred EEEeccccccccccch----------h------h----HH--HHHHHHHHhcCCEEEEcCHHHHHHHHhC----------
Confidence 7888876432211000 0 0 00 1123455677999999999887776531
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
..+.++.+||||+|.+.|.+... .+.. ++..+.+ ++.++|+|+||+.++||++.+++|
T Consensus 156 -~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~---~~~~~i~~vGr~~~~Kg~~~li~a 213 (358)
T cd03812 156 -VKNKKFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGIL---EDKFVIGHVGRFSEQKNHEFLIEI 213 (358)
T ss_pred -CCcccEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCC---CCCEEEEEEeccccccChHHHHHH
Confidence 13578999999999988765321 0111 4445554 266899999999999999999999
Q ss_pred HHHhhc--CCcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 833 IYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 833 iarLle--~nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
+..+.+ .+++++|+|+|+... +.. ..+|+.||++|+||.+|+||++++|||++|+||
T Consensus 214 ~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~Pv 293 (358)
T cd03812 214 FAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPC 293 (358)
T ss_pred HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCE
Confidence 999976 389999999988532 110 199999999999999999999999999999999
Q ss_pred ccCCCc
Q 002589 890 NNNCEP 895 (904)
Q Consensus 890 ~~~v~~ 895 (904)
+....|
T Consensus 294 I~s~~~ 299 (358)
T cd03812 294 ILSDTI 299 (358)
T ss_pred EEEcCC
Confidence 655433
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.93 E-value=2.4e-24 Score=231.18 Aligned_cols=262 Identities=17% Similarity=0.139 Sum_probs=180.0
Q ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC
Q 002589 526 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (904)
Q Consensus 526 kvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps 605 (904)
..||++.++.+|+++|.+.||+|.|+++...... .+ ...|++++.+..
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~-----~~-----------------------~~~~~~~~~~~~---- 55 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVA-----EL-----------------------EAEGSRHIKLPF---- 55 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH-----HH-----------------------HhcCCeEEEccc----
Confidence 4699999999999999999999999987532110 00 012444443321
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCC
Q 002589 606 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA 685 (904)
Q Consensus 606 ~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~ 685 (904)
.. ...+ ....+...+..++.+ .+|||||+|++..++.+.+... ..++|+|+++|+....
T Consensus 56 --~~-~~~~-------~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~--- 114 (355)
T cd03819 56 --IS-KNPL-------RILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSV--- 114 (355)
T ss_pred --cc-cchh-------hhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhh---
Confidence 00 0111 111122233344443 5899999998776654322222 2479999999976311
Q ss_pred ChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecC
Q 002589 686 PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 765 (904)
Q Consensus 686 p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNG 765 (904)
.. +.+..+..+|.++++|+..++.+.. .++ .+..++.+||||
T Consensus 115 --~~---------------------------~~~~~~~~~~~vi~~s~~~~~~~~~-~~~--------~~~~k~~~i~ng 156 (355)
T cd03819 115 --NF---------------------------RYNAIMARGDRVIAVSNFIADHIRE-NYG--------VDPDRIRVIPRG 156 (355)
T ss_pred --HH---------------------------HHHHHHHhcCEEEEeCHHHHHHHHH-hcC--------CChhhEEEecCC
Confidence 00 1123456799999999988887764 222 346789999999
Q ss_pred ccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEE
Q 002589 766 IDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQF 843 (904)
Q Consensus 766 ID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqL 843 (904)
+|...|.+.... ......++++++++. +.++|+|+||+.++||++.+++|+..+.+ .++++
T Consensus 157 i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l 219 (355)
T cd03819 157 VDLDRFDPGAVP--------------PERILALAREWPLPK---GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL 219 (355)
T ss_pred ccccccCccccc--------------hHHHHHHHHHcCCCC---CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE
Confidence 999888654210 011223677777763 56889999999999999999999999876 47999
Q ss_pred EEEecCCccc-cc-------------H-----------HHHHHhcCeEEEcC-CCCCChHHHHHHccCCcccccCCCc
Q 002589 844 ILLGSSPVPH-IQ-------------V-----------YPILLSSFSFLRKH-IFNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 844 VLVGdGp~~~-le-------------k-----------e~LyAaADVfVlPS-~~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
+++|.|+... +. . ..+|++||++++|| .+|+||++++|||++|+||+....|
T Consensus 220 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~ 297 (355)
T cd03819 220 LIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG 297 (355)
T ss_pred EEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC
Confidence 9999986431 10 0 18999999999999 7999999999999999999655444
No 27
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.93 E-value=1.5e-24 Score=231.02 Aligned_cols=250 Identities=20% Similarity=0.153 Sum_probs=168.1
Q ss_pred CeEEEEcCccCC--CcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeee
Q 002589 512 LHVIHIAAEMAP--VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (904)
Q Consensus 512 MkILhIt~E~~P--~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g 589 (904)
|||++|++.+.| ....||.++++..|+++|.++||+|+|+++........ +..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~~~--------------------- 55 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----LVP--------------------- 55 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----eee---------------------
Confidence 899999998754 23589999999999999999999999999875421100 000
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCC
Q 002589 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (904)
Q Consensus 590 ~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~g 669 (904)
... ..+... + ... . .....+...+..++. ..+|||||+|.+....+ +.. ..+
T Consensus 56 -~~~-~~~~~~------~------~~~--~-~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~---~~~------~~~ 107 (335)
T cd03802 56 -VVP-EPLRLD------A------PGR--D-RAEAEALALAERALA--AGDFDIVHNHSLHLPLP---FAR------PLP 107 (335)
T ss_pred -ccC-CCcccc------c------chh--h-HhhHHHHHHHHHHHh--cCCCCEEEecCcccchh---hhc------ccC
Confidence 000 000000 0 000 0 001111222333443 35799999998876543 111 357
Q ss_pred CeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcc
Q 002589 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 749 (904)
Q Consensus 670 iPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~ 749 (904)
+|+|+|+|+....... . .......++.++++|+..++....
T Consensus 108 ~~~v~~~h~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~s~~~~~~~~~-------- 148 (335)
T cd03802 108 VPVVTTLHGPPDPELL--K-----------------------------LYYAARPDVPFVSISDAQRRPWPP-------- 148 (335)
T ss_pred CCEEEEecCCCCcccc--h-----------------------------HHHhhCcCCeEEEecHHHHhhccc--------
Confidence 8999999987421100 0 112334567899999877654321
Q ss_pred cccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHH
Q 002589 750 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 829 (904)
Q Consensus 750 ~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlL 829 (904)
..++.+||||+|++.|.+.. .+.+.|+|+||+.+.||++.+
T Consensus 149 ------~~~~~vi~ngvd~~~~~~~~---------------------------------~~~~~i~~~Gr~~~~Kg~~~l 189 (335)
T cd03802 149 ------LPWVATVHNGIDLDDYPFRG---------------------------------PKGDYLLFLGRISPEKGPHLA 189 (335)
T ss_pred ------ccccEEecCCcChhhCCCCC---------------------------------CCCCEEEEEEeeccccCHHHH
Confidence 15789999999998876521 134689999999999999999
Q ss_pred HHHHHHhhcCCcEEEEEecCCcccc-----------cH-------------HHHHHhcCeEEEcCCC-CCChHHHHHHcc
Q 002589 830 RHAIYRTLELGGQFILLGSSPVPHI-----------QV-------------YPILLSSFSFLRKHIF-NICNLYIKLGQG 884 (904)
Q Consensus 830 IeAiarLle~nvqLVLVGdGp~~~l-----------ek-------------e~LyAaADVfVlPS~~-EpFGLv~LEAMg 884 (904)
++|+.+. +++|+|+|+|+.... .. ..+|+.||++|+||.+ |+||++++|||+
T Consensus 190 i~~~~~~---~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma 266 (335)
T cd03802 190 IRAARRA---GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMA 266 (335)
T ss_pred HHHHHhc---CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHh
Confidence 9998653 799999999864310 00 1789999999999985 999999999999
Q ss_pred CCcccccCCCc
Q 002589 885 GDLTVNNNCEP 895 (904)
Q Consensus 885 ~gl~V~~~v~~ 895 (904)
+|+||+....|
T Consensus 267 ~G~PvI~~~~~ 277 (335)
T cd03802 267 CGTPVIAFRRG 277 (335)
T ss_pred cCCCEEEeCCC
Confidence 99999654433
No 28
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.93 E-value=2e-24 Score=231.31 Aligned_cols=274 Identities=19% Similarity=0.216 Sum_probs=185.3
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+++++.+ ..||.+.++..|+++|.+.||+|+|+++........ . ..
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~-----------~~------------- 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP----P-----------ID------------- 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc----h-----------hh-------------
Confidence 588887653 479999999999999999999999998653321100 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
+..+..+.. .. .. ..+......+..+++ ..+|||||+|.+++.+++.+.... ..++|+
T Consensus 49 ~~~~~~~~~-------~~-~~-------~~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLNM-------SK-NP-------LSFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEecc-------cc-cc-------hhhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 000011110 00 00 011111122334444 358999999998776654333322 257899
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|+|+|+....+.. . ....+....+++.++++|+...+.+... ++
T Consensus 107 v~~~h~~~~~~~~-----~-----------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~------- 150 (360)
T cd04951 107 ICTAHSKNEGGRL-----R-----------------------MLAYRLTDFLSDLTTNVSKEALDYFIAS-KA------- 150 (360)
T ss_pred EEEeeccCchhHH-----H-----------------------HHHHHHHhhccCceEEEcHHHHHHHHhc-cC-------
Confidence 9999987422110 0 0011223345788889999887777652 11
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.+..++.+||||+|...|.+.. ..+..+++.++++. +.++++|+||+.+.||++.+++|
T Consensus 151 -~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~l~~g~~~~~kg~~~li~a 209 (360)
T cd04951 151 -FNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVKN---DTFVILAVGRLVEAKDYPNLLKA 209 (360)
T ss_pred -CCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcCC---CCEEEEEEeeCchhcCcHHHHHH
Confidence 3457899999999998776531 12345677888863 56899999999999999999999
Q ss_pred HHHhhcC--CcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 833 IYRTLEL--GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 833 iarLle~--nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
+..+.+. +++|+|+|+|+... +++ ..+|+.||++|+||.+|+||++++|||++|+||
T Consensus 210 ~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 210 FAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPV 289 (360)
T ss_pred HHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCE
Confidence 9988753 79999999988542 111 189999999999999999999999999999999
Q ss_pred ccCCCccc
Q 002589 890 NNNCEPWL 897 (904)
Q Consensus 890 ~~~v~~~l 897 (904)
+....|.+
T Consensus 290 I~~~~~~~ 297 (360)
T cd04951 290 VATDAGGV 297 (360)
T ss_pred EEecCCCh
Confidence 66554443
No 29
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.93 E-value=7.2e-25 Score=240.56 Aligned_cols=289 Identities=17% Similarity=0.137 Sum_probs=176.5
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||+++++.+ ..||.++++.+|+++|.++||+|+|+|+.++.... ... ..+
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----~~~-------~~~------------- 51 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC-----FEE-------TKD------------- 51 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc-----chh-------ccC-------------
Confidence 8999998754 46999999999999999999999999976432110 000 000
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhH-HHHHHHHHHHH--HHhCCCccEEEEcCCchhhHHHHHHHhhccCCCC
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRF-SFFSRAALELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rf-s~FsraaLe~L--rq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~ 668 (904)
.++.++.+....|..+|.+ +..+ .++......+. .....+|||||+|++..+. ++... ..
T Consensus 52 ~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~--~~~~~------~~ 114 (392)
T cd03805 52 GTLPVRVRGDWLPRSIFGR---------FHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACV--PLLKL------FS 114 (392)
T ss_pred CeeEEEEEeEEEcchhhHh---------HHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHH--HHHHH------hc
Confidence 1133332221001111111 0011 11111111111 1124689999999866543 22221 12
Q ss_pred CCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 669 giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
+.|+|+++|.............. ..+ ......+.+.++..||.|+++|+..++.+... ++ +
T Consensus 115 ~~~~i~~~h~~~~~~~~~~~~~~------~~~----------~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~-~~-~- 175 (392)
T cd03805 115 PSKILFYCHFPDQLLAQRGSLLK------RLY----------RKPFDWLEEFTTGMADKIVVNSNFTASVFKKT-FP-S- 175 (392)
T ss_pred CCcEEEEEecChHHhcCCCcHHH------HHH----------HHHHHHHHHHHhhCceEEEEcChhHHHHHHHH-hc-c-
Confidence 38999999954311000000000 000 00001234567788999999999887766542 21 0
Q ss_pred ccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHH
Q 002589 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 828 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdl 828 (904)
....++.+||||+|.+.|.|..... .++..+.+ ++.++|+++||+.+.||++.
T Consensus 176 -----~~~~~~~vi~n~vd~~~~~~~~~~~-------------------~~~~~~~~---~~~~~i~~~grl~~~Kg~~~ 228 (392)
T cd03805 176 -----LAKNPREVVYPCVDTDSFESTSEDP-------------------DPGLLIPK---SGKKTFLSINRFERKKNIAL 228 (392)
T ss_pred -----cccCCcceeCCCcCHHHcCcccccc-------------------cccccccC---CCceEEEEEeeecccCChHH
Confidence 1223456999999998886642110 11122222 25688999999999999999
Q ss_pred HHHHHHHhhc-----CCcEEEEEecCCcc---------cc----cH-------------------HHHHHhcCeEEEcCC
Q 002589 829 IRHAIYRTLE-----LGGQFILLGSSPVP---------HI----QV-------------------YPILLSSFSFLRKHI 871 (904)
Q Consensus 829 LIeAiarLle-----~nvqLVLVGdGp~~---------~l----ek-------------------e~LyAaADVfVlPS~ 871 (904)
+++|+.++.+ .+++|+++|+|+.+ .+ ++ ..+|++||++++||.
T Consensus 229 ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~ 308 (392)
T cd03805 229 AIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS 308 (392)
T ss_pred HHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC
Confidence 9999999874 37899999998642 01 11 178999999999999
Q ss_pred CCCChHHHHHHccCCcccccC
Q 002589 872 FNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 872 ~EpFGLv~LEAMg~gl~V~~~ 892 (904)
+|+||++++|||++|+||+..
T Consensus 309 ~E~~g~~~lEAma~G~PvI~s 329 (392)
T cd03805 309 NEHFGIVPLEAMYAGKPVIAC 329 (392)
T ss_pred cCCCCchHHHHHHcCCCEEEE
Confidence 999999999999999999643
No 30
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=7.7e-24 Score=227.51 Aligned_cols=278 Identities=18% Similarity=0.152 Sum_probs=175.2
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|..+++|. ..||+++++.+|+++|++.||+|+|+++....... .....
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~---------------------------~~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK---------------------------ETEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc---------------------------ccccC
Confidence 689997765554 47999999999999999999999999976432110 00135
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|++++.++.. +.... ..+.+....+...+. ...++|+||.+.+...++ .... . ..+.|+
T Consensus 53 ~i~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~---~~~~-~---~~~~~~ 111 (363)
T cd04955 53 GVRLIHIPAP-------EIGGL------GTIIYDILAILHALF-VKRDIDHVHALGPAIAPF---LPLL-R---LKGKKV 111 (363)
T ss_pred CceEEEcCCC-------Cccch------hhhHHHHHHHHHHHh-ccCCeEEEEecCccHHHH---HHHH-H---hcCCCE
Confidence 6666655421 00000 111111111111111 123445555444333222 1111 1 137899
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|+++|+..+..... +..... + .....+.++..+|.|+++|+..++.+.. .++
T Consensus 112 v~~~h~~~~~~~~~-------~~~~~~-----------~--~~~~~~~~~~~ad~ii~~s~~~~~~~~~-~~~------- 163 (363)
T cd04955 112 VVNMDGLEWKRAKW-------GRPAKR-----------Y--LKFGEKLAVKFADRLIADSPGIKEYLKE-KYG------- 163 (363)
T ss_pred EEEccCcceeeccc-------ccchhH-----------H--HHHHHHHHHhhccEEEeCCHHHHHHHHH-hcC-------
Confidence 99999875321100 000000 0 0112345677899999999988887754 222
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
... .+||||+|...+.+. ...++.++++ ..+.++|+||+.+.||++.+++|
T Consensus 164 ---~~~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~~----~~~~i~~~G~~~~~Kg~~~li~a 214 (363)
T cd04955 164 ---RDS-TYIPYGADHVVSSEE---------------------DEILKKYGLE----PGRYYLLVGRIVPENNIDDLIEA 214 (363)
T ss_pred ---CCC-eeeCCCcChhhcchh---------------------hhhHHhcCCC----CCcEEEEEecccccCCHHHHHHH
Confidence 122 899999998765431 1123445554 23568899999999999999999
Q ss_pred HHHhhcCCcEEEEEecCCccc-c----c-----------------HH--HHHHhcCeEEEcCCC-CCChHHHHHHccCCc
Q 002589 833 IYRTLELGGQFILLGSSPVPH-I----Q-----------------VY--PILLSSFSFLRKHIF-NICNLYIKLGQGGDL 887 (904)
Q Consensus 833 iarLle~nvqLVLVGdGp~~~-l----e-----------------ke--~LyAaADVfVlPS~~-EpFGLv~LEAMg~gl 887 (904)
+..+.. +++|+|+|+|+... + . .+ .+|+.||++++||.+ |+||++++|||++|+
T Consensus 215 ~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~ 293 (363)
T cd04955 215 FSKSNS-GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC 293 (363)
T ss_pred HHhhcc-CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC
Confidence 998865 79999999985331 1 1 01 889999999999998 999999999999999
Q ss_pred ccccCCCccc
Q 002589 888 TVNNNCEPWL 897 (904)
Q Consensus 888 ~V~~~v~~~l 897 (904)
||+....|.+
T Consensus 294 PvI~s~~~~~ 303 (363)
T cd04955 294 PVLASDNPFN 303 (363)
T ss_pred CEEEecCCcc
Confidence 9966555543
No 31
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.93 E-value=3.3e-24 Score=239.25 Aligned_cols=268 Identities=11% Similarity=0.082 Sum_probs=180.4
Q ss_pred eEEEEcCccCCCc--CCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeee
Q 002589 513 HVIHIAAEMAPVA--KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (904)
Q Consensus 513 kILhIt~E~~P~a--kvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~ 590 (904)
||+++|++-.|+. ..||+++++.++++.|. ++|+|++-..++.+... ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~--------------------------~~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYT--------------------------KV 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchh--------------------------hc
Confidence 8999998865443 48999999999999995 39999987655322110 01
Q ss_pred eCCeeEEEeCCCCCCccccc-CCCCCCCcchhhHHHHHHHHHHHHHHh-CCCccEEEEcCCchhhHHHHHHHhhccCCCC
Q 002589 591 IEGLPVYFIEPHHPDKFFWR-GQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (904)
Q Consensus 591 v~GV~V~fIdp~~Ps~~F~r-~~iYg~~dd~~Rfs~FsraaLe~Lrq~-g~kPDIIHaHdW~talvapL~~~~ya~~gL~ 668 (904)
.+|+.++.++.. + .+.+ ...|.. . +...|+..++..+... +..+||||+|+... ++ ..+... ..
T Consensus 55 ~~~~~~~~~~~~--~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~-~~~~~~-----~~ 120 (380)
T PRK15484 55 NDNCDIHYIGFS--R-IYKRLFQKWTR---L-DPLPYSQRILNIAHKFTITKDSVIVIHNSMK-LY-RQIRER-----AP 120 (380)
T ss_pred cCCCceEEEEec--c-ccchhhhhhhc---c-CchhHHHHHHHHHHhcCCCCCcEEEEeCcHH-hH-HHHHhh-----CC
Confidence 244555555321 0 0000 000000 0 1123344455555433 45799999998443 22 222221 35
Q ss_pred CCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 669 giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
++|+|+|+|+.. . .. .+..++.++++|+..++.+.. .+
T Consensus 121 ~~~~v~~~h~~~-~----~~--------------------------------~~~~~~~ii~~S~~~~~~~~~-~~---- 158 (380)
T PRK15484 121 QAKLVMHMHNAF-E----PE--------------------------------LLDKNAKIIVPSQFLKKFYEE-RL---- 158 (380)
T ss_pred CCCEEEEEeccc-C----hh--------------------------------HhccCCEEEEcCHHHHHHHHh-hC----
Confidence 789999999752 0 00 112368899999988776654 11
Q ss_pred ccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHH
Q 002589 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 828 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdl 828 (904)
+..++.+||||+|.+.|.|.. +..+++.+|++. +.++|+|+||+.+.||++.
T Consensus 159 ------~~~~i~vIpngvd~~~~~~~~-------------------~~~~~~~~~~~~---~~~~il~~Grl~~~Kg~~~ 210 (380)
T PRK15484 159 ------PNADISIVPNGFCLETYQSNP-------------------QPNLRQQLNISP---DETVLLYAGRISPDKGILL 210 (380)
T ss_pred ------CCCCEEEecCCCCHHHcCCcc-------------------hHHHHHHhCCCC---CCeEEEEeccCccccCHHH
Confidence 346789999999998776531 234567788763 4578999999999999999
Q ss_pred HHHHHHHhhc--CCcEEEEEecCCccc------cc---------------------H---HHHHHhcCeEEEcCCC-CCC
Q 002589 829 IRHAIYRTLE--LGGQFILLGSSPVPH------IQ---------------------V---YPILLSSFSFLRKHIF-NIC 875 (904)
Q Consensus 829 LIeAiarLle--~nvqLVLVGdGp~~~------le---------------------k---e~LyAaADVfVlPS~~-EpF 875 (904)
+++|+..+.+ .+++|+|+|+|+... +. . ..+|++||+||+||.+ |+|
T Consensus 211 Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 211 LMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 9999999875 479999999876321 10 0 1889999999999986 999
Q ss_pred hHHHHHHccCCcccccCC
Q 002589 876 NLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 876 GLv~LEAMg~gl~V~~~v 893 (904)
|++++|||++|+||+...
T Consensus 291 ~~~~lEAma~G~PVI~s~ 308 (380)
T PRK15484 291 CMVAVEAMAAGKPVLAST 308 (380)
T ss_pred ccHHHHHHHcCCCEEEeC
Confidence 999999999999995543
No 32
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=2e-24 Score=247.58 Aligned_cols=299 Identities=13% Similarity=0.091 Sum_probs=175.8
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCC-CeEEEEeeCCCCCcccccccccccceeeecccCCc---cccce
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGR---LFKNK 585 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~G-HeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~---~~~~~ 585 (904)
+.|||+++|..|.|. ++|+.+.+..++..|+++| |+|+||+|.++..+... ...-++ .|... ....+
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~---~~~~~~----~f~~~~~~e~~~~ 73 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKL---VYPNKI----TFSSPSEQEAYVR 73 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccc---cccccc----cccCchhhhhhhh
Confidence 469999999999997 7999999999999999999 89999999986321100 000000 01100 00011
Q ss_pred eeeeeeCCeeEEEeCCCCCCcccccCCCCCC-CcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCch-hhH-HHHHHHhh
Q 002589 586 VWVSTIEGLPVYFIEPHHPDKFFWRGQFYGE-HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFV-APLYWDLY 662 (904)
Q Consensus 586 V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg~-~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~t-alv-apL~~~~y 662 (904)
.| .+-.+++++.. | + ..|+. .-...++......+.+.+. ..+|||||+|+... +.+ .+..|.
T Consensus 74 ~~----~~~~v~r~~s~-~--~----p~yp~r~~~~~r~~~~~~~i~~~l~--~~~pDVIHv~tP~~LG~~~~g~~~~-- 138 (462)
T PLN02846 74 QW----LEERISFLPKF-S--I----KFYPGKFSTDKRSILPVGDISETIP--DEEADIAVLEEPEHLTWYHHGKRWK-- 138 (462)
T ss_pred hh----ccCeEEEeccc-c--c----ccCcccccccccccCChHHHHHHHH--hcCCCEEEEcCchhhhhHHHHHHHH--
Confidence 11 11122233210 0 0 11221 0000111222344445555 36899999998554 222 011221
Q ss_pred ccCCCCCCeEEEEecCCcccCCCChhhhhhcC--CcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHH
Q 002589 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCG--LDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVR 740 (904)
Q Consensus 663 a~~gL~giPiV~TIHnl~~qG~~p~~~L~~~G--L~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~ 740 (904)
. . . .++|.|+|.- |.. .+...+ ..... + .....++++. .+||.|+++|.... ++.
T Consensus 139 -~-k-~-~~vV~tyHT~-y~~-----Y~~~~~~g~~~~~------l----~~~~~~~~~r--~~~d~vi~pS~~~~-~l~ 195 (462)
T PLN02846 139 -T-K-F-RLVIGIVHTN-YLE-----YVKREKNGRVKAF------L----LKYINSWVVD--IYCHKVIRLSAATQ-DYP 195 (462)
T ss_pred -h-c-C-CcEEEEECCC-hHH-----HHHHhccchHHHH------H----HHHHHHHHHH--HhcCEEEccCHHHH-HHh
Confidence 1 1 2 3488899973 111 110000 00000 0 0000011111 25899999997443 333
Q ss_pred hhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecc
Q 002589 741 TSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL 820 (904)
Q Consensus 741 ~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL 820 (904)
. ...+.+||||.+.|.|... .+++.++ +. +.-.++++|||||
T Consensus 196 ~----------------~~i~~v~GVd~~~f~~~~~--------------------~~~~~~~-~~-~~~~~~~l~vGRL 237 (462)
T PLN02846 196 R----------------SIICNVHGVNPKFLEIGKL--------------------KLEQQKN-GE-QAFTKGAYYIGKM 237 (462)
T ss_pred h----------------CEEecCceechhhcCCCcc--------------------cHhhhcC-CC-CCcceEEEEEecC
Confidence 2 2334468999998877421 0222222 21 1123578999999
Q ss_pred cCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH------------------HHHHHhcCeEEEcCCCCCChHHH
Q 002589 821 VPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYI 879 (904)
Q Consensus 821 ~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------e~LyAaADVfVlPS~~EpFGLv~ 879 (904)
.++||++.|++|+..+.+ .+++|+|+|+||++. +++ +.+|+.+|+||+||.+|+||+|+
T Consensus 238 ~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~ 317 (462)
T PLN02846 238 VWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTT 317 (462)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHH
Confidence 999999999999998865 478999999999763 221 16999999999999999999999
Q ss_pred HHHccCCcccccCC
Q 002589 880 KLGQGGDLTVNNNC 893 (904)
Q Consensus 880 LEAMg~gl~V~~~v 893 (904)
+|||++|+||+.-.
T Consensus 318 lEAmA~G~PVVa~~ 331 (462)
T PLN02846 318 AEALAMGKIVVCAN 331 (462)
T ss_pred HHHHHcCCcEEEec
Confidence 99999999996543
No 33
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.93 E-value=4.7e-24 Score=233.79 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=174.3
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
.+|+||...+ ..||++.++..|+++|.+.||++.|++..... ... ..+ ..
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~--~~~-----------------------~~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFR--KRI-----------------------QR 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhH--HHH-----------------------Hh
Confidence 4899998754 46999999999999999999999999743211 000 000 12
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.|+.++.+... .. . ++ .+...+..++++ .+|||||+|+..+.. ..+... +.++|
T Consensus 52 ~~i~~~~~~~~---------~~-~---~~----~~~~~l~~~l~~--~~~Divh~~~~~~~~--~~~~~~-----~~~~~ 105 (374)
T TIGR03088 52 PDVAFYALHKQ---------PG-K---DV----AVYPQLYRLLRQ--LRPDIVHTRNLAALE--AQLPAA-----LAGVP 105 (374)
T ss_pred cCceEEEeCCC---------CC-C---Ch----HHHHHHHHHHHH--hCCCEEEEcchhHHH--HHHHHH-----hcCCC
Confidence 35555544310 00 0 11 112334455553 589999999754322 112111 12444
Q ss_pred -EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh-hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcc
Q 002589 672 -VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP-LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 749 (904)
Q Consensus 672 -iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~-lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~ 749 (904)
+++|.|+..+.... .. . + ..++ .+.....+|.++++|+..++.+... ++
T Consensus 106 ~~i~~~h~~~~~~~~-~~----------~-----------~--~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~-~~---- 156 (374)
T TIGR03088 106 ARIHGEHGRDVFDLD-GS----------N-----------W--KYRWLRRLYRPLIHHYVAVSRDLEDWLRGP-VK---- 156 (374)
T ss_pred eEEEeecCcccccch-hh----------H-----------H--HHHHHHHHHHhcCCeEEEeCHHHHHHHHHh-cC----
Confidence 35666654311000 00 0 0 0111 2233446899999999888777642 22
Q ss_pred cccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHH
Q 002589 750 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 829 (904)
Q Consensus 750 ~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlL 829 (904)
.++.++.+||||+|.+.|.|.... +...++....+ .+.++|+++||+.++||++.+
T Consensus 157 ----~~~~~~~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~i~~vGrl~~~Kg~~~l 212 (374)
T TIGR03088 157 ----VPPAKIHQIYNGVDTERFHPSRGD-----------------RSPILPPDFFA---DESVVVGTVGRLQAVKDQPTL 212 (374)
T ss_pred ----CChhhEEEeccCccccccCCCccc-----------------hhhhhHhhcCC---CCCeEEEEEecCCcccCHHHH
Confidence 345789999999999988764210 11112222222 256799999999999999999
Q ss_pred HHHHHHhhcC------CcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHH
Q 002589 830 RHAIYRTLEL------GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLG 882 (904)
Q Consensus 830 IeAiarLle~------nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEA 882 (904)
++|+..+.+. +++|+++|+|+... +++ ..+|++||++|+||.+|+||++++||
T Consensus 213 i~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEA 292 (374)
T TIGR03088 213 VRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEA 292 (374)
T ss_pred HHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHH
Confidence 9999988642 68999999987532 111 19999999999999999999999999
Q ss_pred ccCCcccccC
Q 002589 883 QGGDLTVNNN 892 (904)
Q Consensus 883 Mg~gl~V~~~ 892 (904)
|++|+||+..
T Consensus 293 ma~G~Pvv~s 302 (374)
T TIGR03088 293 MASGLPVIAT 302 (374)
T ss_pred HHcCCCEEEc
Confidence 9999999543
No 34
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.92 E-value=2.1e-24 Score=237.75 Aligned_cols=270 Identities=17% Similarity=0.195 Sum_probs=170.0
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+|++..+ ..||++.++.+++++|.+.||+|++++|........ .. . ++. ....
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~----~~-----------~-----~~~-~~~~ 55 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFN----VT-----------K-----KFH-NALQ 55 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHH----HH-----------H-----Hhh-Hhhc
Confidence 689998754 369999999999999999999999999863311000 00 0 000 0011
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHH--HhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCC
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLL--QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lr--q~g~kPDIIHaHdW~talvapL~~~~ya~~gL~gi 670 (904)
|.+. .++ .. .+ ..+.......+. ....+|||||+|++....+ +.++. ..++
T Consensus 56 g~~~-~~~-----------------~~-~~-~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~-~~~~~------~~~~ 108 (372)
T cd03792 56 GADI-ELS-----------------EE-EK-EIYLEWNEENAERPLLDLDADVVVIHDPQPLAL-PLFKK------KRGR 108 (372)
T ss_pred CCCC-CCC-----------------HH-HH-HHHHHHHHHHhccccccCCCCEEEECCCCchhH-HHhhh------cCCC
Confidence 2111 010 00 00 111111111111 1135899999999875332 22211 2378
Q ss_pred eEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccc
Q 002589 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHS 750 (904)
Q Consensus 671 PiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~ 750 (904)
|+|+++|+.... +... ...+.+..+..+|.++++|+.++. .++
T Consensus 109 ~~i~~~H~~~~~---~~~~------------------------~~~~~~~~~~~~d~~i~~~~~~~~--------~~~-- 151 (372)
T cd03792 109 PWIWRCHIDLSS---PNRR------------------------VWDFLQPYIEDYDAAVFHLPEYVP--------PQV-- 151 (372)
T ss_pred eEEEEeeeecCC---CcHH------------------------HHHHHHHHHHhCCEEeecHHHhcC--------CCC--
Confidence 999999974211 0000 011234556678999888843321 121
Q ss_pred ccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHH
Q 002589 751 TLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 830 (904)
Q Consensus 751 ~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLI 830 (904)
.+.++ +||||||....... .++ ...+..+++++|++. +.++|+++||+.++||++.++
T Consensus 152 ----~~~~~-vipngvd~~~~~~~-------~~~-------~~~~~~~~~~~~~~~---~~~~i~~vgrl~~~Kg~~~ll 209 (372)
T cd03792 152 ----PPRKV-IIPPSIDPLSGKNR-------ELS-------PADIEYILEKYGIDP---ERPYITQVSRFDPWKDPFGVI 209 (372)
T ss_pred ----CCceE-EeCCCCCCCccccC-------CCC-------HHHHHHHHHHhCCCC---CCcEEEEEeccccccCcHHHH
Confidence 23455 99999997531110 111 112445678899863 678999999999999999999
Q ss_pred HHHHHhhc--CCcEEEEEecCCccc------cc----------------------HH--HHHHhcCeEEEcCCCCCChHH
Q 002589 831 HAIYRTLE--LGGQFILLGSSPVPH------IQ----------------------VY--PILLSSFSFLRKHIFNICNLY 878 (904)
Q Consensus 831 eAiarLle--~nvqLVLVGdGp~~~------le----------------------ke--~LyAaADVfVlPS~~EpFGLv 878 (904)
+|+..+.+ .+++|+|+|+|+... ++ .+ .+|++||+|++||.+|+||++
T Consensus 210 ~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~ 289 (372)
T cd03792 210 DAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLT 289 (372)
T ss_pred HHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHH
Confidence 99998875 479999999986420 00 01 789999999999999999999
Q ss_pred HHHHccCCcccccCC
Q 002589 879 IKLGQGGDLTVNNNC 893 (904)
Q Consensus 879 ~LEAMg~gl~V~~~v 893 (904)
++|||++|+||+...
T Consensus 290 ~lEA~a~G~Pvv~s~ 304 (372)
T cd03792 290 VTEALWKGKPVIAGP 304 (372)
T ss_pred HHHHHHcCCCEEEcC
Confidence 999999999996543
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.92 E-value=1e-23 Score=222.48 Aligned_cols=287 Identities=19% Similarity=0.206 Sum_probs=181.0
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|++.++| ..||.+.++..|+++|.+.||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------~~------------~ 51 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV---------------AL------------N 51 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh---------------hc------------c
Confidence 69999998876 4799999999999999999999999997754221100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcC-CchhhHHHHHHHhhccCCCCCCe
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHd-W~talvapL~~~~ya~~gL~giP 671 (904)
+.......... ..+.. .. . ..+......++.....+|||||+|+ |............ ..++|
T Consensus 52 ~~~~~~~~~~~--~~~~~--~~-------~-~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~-----~~~~~ 114 (375)
T cd03821 52 GVPVKLFSINV--AYGLN--LA-------R-YLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAAR-----KYGIP 114 (375)
T ss_pred Cceeeecccch--hhhhh--hh-------h-hccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHH-----HhCCC
Confidence 00000000000 00000 00 0 0011111122222346899999998 3332221111111 24789
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+++|+.......+...+. + ........+..+..++.++++|..........
T Consensus 115 ~i~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--------- 167 (375)
T cd03821 115 YVVSPHGMLDPWALPHKALK-------------K-----RLAWFLFERRLLQAAAAVHATSEQEAAEIRRL--------- 167 (375)
T ss_pred EEEEccccccccccccchhh-------------h-----HHHHHHHHHHHHhcCCEEEECCHHHHHHHHhh---------
Confidence 99999986321110000000 0 00011223455677899999997766655431
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
....++.+||||+|.+.|.+... ... ++.++.+ .+.++|+|+||+.+.||++.+++
T Consensus 168 --~~~~~~~vi~~~~~~~~~~~~~~------------------~~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~li~ 223 (375)
T cd03821 168 --GLKAPIAVIPNGVDIPPFAALPS------------------RGR-RRKFPIL---PDKRIILFLGRLHPKKGLDLLIE 223 (375)
T ss_pred --CCcccEEEcCCCcChhccCcchh------------------hhh-hhhccCC---CCCcEEEEEeCcchhcCHHHHHH
Confidence 13568999999999988865321 111 4556655 36689999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEecCCccc---cc---H-------------------HHHHHhcCeEEEcCCCCCChHHHHHHcc
Q 002589 832 AIYRTLE--LGGQFILLGSSPVPH---IQ---V-------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 884 (904)
Q Consensus 832 AiarLle--~nvqLVLVGdGp~~~---le---k-------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg 884 (904)
|+..+.+ .+++|+++|.++... ++ . ..+|+.||++|+||.+|+||++++|||+
T Consensus 224 a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama 303 (375)
T cd03821 224 AFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALA 303 (375)
T ss_pred HHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHh
Confidence 9999886 489999999875321 10 0 1789999999999999999999999999
Q ss_pred CCcccccCCCcc
Q 002589 885 GDLTVNNNCEPW 896 (904)
Q Consensus 885 ~gl~V~~~v~~~ 896 (904)
+|+||+....|-
T Consensus 304 ~G~PvI~~~~~~ 315 (375)
T cd03821 304 CGTPVVTTDKVP 315 (375)
T ss_pred cCCCEEEcCCCC
Confidence 999997655443
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.92 E-value=2.7e-23 Score=231.46 Aligned_cols=291 Identities=16% Similarity=0.153 Sum_probs=175.5
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
|||+|...|++- ..+||++|+++||+|+|+++....... .
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~-------------------------------~ 40 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP-------------------------------G 40 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC-------------------------------C
Confidence 688888876432 357999999999999999987442100 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHH---HHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCC
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELL---LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~L---rq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~g 669 (904)
|++++.+.+... .....+++...+.......+++...+ +..+++|||||+|...+.. ..+... +.+
T Consensus 41 ~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~--~~l~~~-----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPRG----PTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGET--LFLKDV-----WPD 109 (396)
T ss_pred CeeEEEecCCCC----CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchh--hhHHHh-----CCC
Confidence 344444432110 01122333223333222223333322 2346789999999754322 223222 357
Q ss_pred CeEEEEecCCcc-cCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 670 ARVCFTCHNFEY-QGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 670 iPiV~TIHnl~~-qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
+|+|.++|-+.. .|.. .+.++......... .+......+....+..||.++++|+..++.+.. .
T Consensus 110 ~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~-~----- 174 (396)
T cd03818 110 APLIGYFEFYYRAEGAD-------VGFDPEFPPSLDDA--LRLRNRNALILLALAQADAGVSPTRWQRSTFPA-E----- 174 (396)
T ss_pred CCEEEEEeeeecCCCCC-------CCCCCCCCCchhHH--HHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcH-h-----
Confidence 899988764320 1100 01111000000000 000011112345788899999999887765532 1
Q ss_pred ccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEec-ccCccCHH
Q 002589 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR-LVPQKGVH 827 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGR-L~~qKGId 827 (904)
...++.+||||+|++.|.|.... ...++...+++ ++.++|+|+|| +.++||++
T Consensus 175 ------~~~ki~vI~ngvd~~~f~~~~~~-----------------~~~~~~~~~~~---~~~~~i~~vgR~l~~~Kg~~ 228 (396)
T cd03818 175 ------LRSRISVIHDGIDTDRLRPDPQA-----------------RLRLPNGRVLT---PGDEVITFVARNLEPYRGFH 228 (396)
T ss_pred ------hccceEEeCCCccccccCCCchh-----------------hhcccccccCC---CCCeEEEEECCCcccccCHH
Confidence 13689999999999998874211 01112222333 25688999998 99999999
Q ss_pred HHHHHHHHhhc--CCcEEEEEecCCc---------c----c----cc----------------HH--HHHHhcCeEEEcC
Q 002589 828 LIRHAIYRTLE--LGGQFILLGSSPV---------P----H----IQ----------------VY--PILLSSFSFLRKH 870 (904)
Q Consensus 828 lLIeAiarLle--~nvqLVLVGdGp~---------~----~----le----------------ke--~LyAaADVfVlPS 870 (904)
.+++|++.+.+ .+++|+|+|++.. . . +. .+ .+|+.||++|+||
T Consensus 229 ~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s 308 (396)
T cd03818 229 VFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLT 308 (396)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcC
Confidence 99999998875 4899999997320 0 0 00 00 8999999999999
Q ss_pred CCCCChHHHHHHccCCcccccCCCc
Q 002589 871 IFNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 871 ~~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
..|+||++++|||++|+||+....|
T Consensus 309 ~~e~~~~~llEAmA~G~PVIas~~~ 333 (396)
T cd03818 309 YPFVLSWSLLEAMACGCLVVGSDTA 333 (396)
T ss_pred cccccchHHHHHHHCCCCEEEcCCC
Confidence 9999999999999999999655444
No 37
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=9.7e-23 Score=218.09 Aligned_cols=273 Identities=17% Similarity=0.165 Sum_probs=178.9
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|+..|+|. .||.+.++.+|+++|.+.||+|+|+++........ . ...
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-------------~--------------~~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD-------------E--------------ERN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh-------------h--------------hcc
Confidence 799999988885 79999999999999999999999998764321100 0 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
+.+++.+.. ++.. ..+.. ...++ ..+.....+|||||+|....... ...+. . ..+.|+
T Consensus 52 ~~~~~~~~~-----~~~~-~~~~~-----~~~~~-----~~~~~~~~~~Dii~~~~~~~~~~-~~~~~--~---~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPS-----LLNV-ASTPF-----SPSFF-----KQLKKLAKKADVIHLHFPNPLAD-LALLL--L---PRKKPV 109 (357)
T ss_pred CceEEEeec-----cccc-ccccc-----cHHHH-----HHHHhcCCCCCEEEEecCcchHH-HHHHH--h---ccCceE
Confidence 223332221 0000 01100 00111 11112256899999997544322 11111 1 146899
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++++|+..+.... + .. ....+.+..+..||.|+++|+.+.+.+... +.
T Consensus 110 i~~~h~~~~~~~~----~------~~--------------~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~-~~------- 157 (357)
T cd03795 110 VVHWHSDIVKQKL----L------LK--------------LYRPLQRRFLRRADAIVATSPNYAETSPVL-RR------- 157 (357)
T ss_pred EEEEcChhhccch----h------hh--------------hhhHHHHHHHHhcCEEEeCcHHHHHHHHHh-cC-------
Confidence 9999974322110 0 00 001234567788999999999988766541 11
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.+.++.+||||+|.+.|.+... ++. .....+ .+.+.|+|+||+.+.||++.+++|
T Consensus 158 --~~~~~~~i~~gi~~~~~~~~~~-----------------~~~---~~~~~~---~~~~~i~~~G~~~~~K~~~~li~a 212 (357)
T cd03795 158 --FRDKVRVIPLGLDPARYPRPDA-----------------LEE---AIWRRA---AGRPFFLFVGRLVYYKGLDVLLEA 212 (357)
T ss_pred --CccceEEecCCCChhhcCCcch-----------------hhh---HhhcCC---CCCcEEEEecccccccCHHHHHHH
Confidence 2368999999999988765321 000 112222 255889999999999999999999
Q ss_pred HHHhhcCCcEEEEEecCCccc-ccH----------------------HHHHHhcCeEEEcCC--CCCChHHHHHHccCCc
Q 002589 833 IYRTLELGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDL 887 (904)
Q Consensus 833 iarLle~nvqLVLVGdGp~~~-lek----------------------e~LyAaADVfVlPS~--~EpFGLv~LEAMg~gl 887 (904)
+..+. +++|+|+|+|+... +++ ..+|+.||++++||. .|+||++++|||++|+
T Consensus 213 ~~~l~--~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~ 290 (357)
T cd03795 213 AAALP--DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK 290 (357)
T ss_pred HHhcc--CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC
Confidence 99986 79999999987532 110 189999999999996 5999999999999999
Q ss_pred ccccCCCc
Q 002589 888 TVNNNCEP 895 (904)
Q Consensus 888 ~V~~~v~~ 895 (904)
||+....|
T Consensus 291 Pvi~~~~~ 298 (357)
T cd03795 291 PVISTEIG 298 (357)
T ss_pred CEEecCCC
Confidence 99655444
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.91 E-value=6.8e-23 Score=215.45 Aligned_cols=278 Identities=19% Similarity=0.218 Sum_probs=189.5
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+++++.+.+ ||.+.++..|+++|.+.||+|++++......... .+ ...
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~-----------------------~~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---EL-----------------------EEA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HH-----------------------Hhc
Confidence 68999987755 9999999999999999999999998653211000 00 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|++++.+... .... . ..+...+..+++ ..+||+||+|.+.+.+.+... ... ..++|+
T Consensus 51 ~i~v~~~~~~---------~~~~---~----~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~-~~~----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKR---------PGRP---D----PGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLA-ARL----AGVPPV 107 (365)
T ss_pred CCeEEEEecc---------cccc---c----HHHHHHHHHHHH--hhCCCEEEeccccccHHHHHH-HHh----cCCCcE
Confidence 5666655421 0000 0 111222334444 358999999988766553322 221 157899
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++++|+...... .... .....+.+.....+|.++++|+...+.+... +
T Consensus 108 i~~~~~~~~~~~---~~~~--------------------~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~------- 155 (365)
T cd03807 108 IWGIRHSDLDLG---KKST--------------------RLVARLRRLLSSFIPLIVANSAAAAEYHQAI--G------- 155 (365)
T ss_pred EEEecCCccccc---chhH--------------------hHHHHHHHHhccccCeEEeccHHHHHHHHHc--C-------
Confidence 999998753210 0000 0001122344556889999999887776541 1
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.+..++.++|||+|...|.+... .+..+++.+|++. +.++|+|+||+.+.||++.+++|
T Consensus 156 -~~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~i~~~G~~~~~K~~~~li~a 214 (365)
T cd03807 156 -YPPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLPE---DTFLIGIVARLHPQKDHATLLRA 214 (365)
T ss_pred -CChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCCC---CCeEEEEecccchhcCHHHHHHH
Confidence 24578999999999987765321 1344567888873 56889999999999999999999
Q ss_pred HHHhhc--CCcEEEEEecCCcccc----cH------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 833 IYRTLE--LGGQFILLGSSPVPHI----QV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 833 iarLle--~nvqLVLVGdGp~~~l----ek------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
+..+.+ .+++|+++|.|+.... .. ..+|+.||++++||.+|+||++++|||++|+|
T Consensus 215 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~P 294 (365)
T cd03807 215 AALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLP 294 (365)
T ss_pred HHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCC
Confidence 998875 4799999999864321 11 18999999999999999999999999999999
Q ss_pred cccCCCcc
Q 002589 889 VNNNCEPW 896 (904)
Q Consensus 889 V~~~v~~~ 896 (904)
|+....|.
T Consensus 295 vI~~~~~~ 302 (365)
T cd03807 295 VVATDVGD 302 (365)
T ss_pred EEEcCCCC
Confidence 96655443
No 39
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.91 E-value=9.7e-23 Score=215.53 Aligned_cols=288 Identities=19% Similarity=0.208 Sum_probs=185.5
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..|+|. .||.+.++..++++|.+.||+|+|+++......... . ..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------~-----------~~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE----------------E-----------VV 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc----------------c-----------cc
Confidence 699999988885 799999999999999999999999998765321100 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
++....... . .+.+ .. ..+. +...+...+. ..+|||||+|+..........+.. ..++|+
T Consensus 52 ~~~~~~~~~-~---~~~~--~~------~~~~-~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~-----~~~~~~ 111 (374)
T cd03817 52 VVRPFRVPT-F---KYPD--FR------LPLP-IPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR-----KLGIPV 111 (374)
T ss_pred ccccccccc-c---hhhh--hh------cccc-HHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH-----HcCCCE
Confidence 000000000 0 0000 00 0011 1122222233 468999999985432211122211 257999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccch-hhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~i-n~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
|+++|+... ............ . ..... .+.+..+..||.++++|+..++.+.. .+
T Consensus 112 i~~~~~~~~------~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~~------ 167 (374)
T cd03817 112 VATYHTMYE------DYTHYVPLGRLL-------A---RAVVRRKLSRRFYNRCDAVIAPSEKIADLLRE--YG------ 167 (374)
T ss_pred EEEecCCHH------HHHHHHhcccch-------h---HHHHHHHHHHHHhhhCCEEEeccHHHHHHHHh--cC------
Confidence 999998631 000000000000 0 00011 34566778899999999987776654 11
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
...++.++|||+|...|.+.. ....++.+++.. +.+.|+|+||+.+.||++.+++
T Consensus 168 ---~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~i~~~G~~~~~k~~~~l~~ 222 (374)
T cd03817 168 ---VKRPIEVIPTGIDLDRFEPVD-------------------GDDERRKLGIPE---DEPVLLYVGRLAKEKNIDFLIR 222 (374)
T ss_pred ---CCCceEEcCCccchhccCccc-------------------hhHHHHhcCCCC---CCeEEEEEeeeecccCHHHHHH
Confidence 134689999999998876532 111245566552 5678999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEecCCccc-cc--------------------H--HHHHHhcCeEEEcCCCCCChHHHHHHccCC
Q 002589 832 AIYRTLE--LGGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGD 886 (904)
Q Consensus 832 AiarLle--~nvqLVLVGdGp~~~-le--------------------k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~g 886 (904)
|+..+.+ .+++|+++|+|+... +. . ..+|+.||++++||.+|+||++++|||++|
T Consensus 223 ~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g 302 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAG 302 (374)
T ss_pred HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcC
Confidence 9999876 579999999987431 10 0 189999999999999999999999999999
Q ss_pred cccccCCCcccc
Q 002589 887 LTVNNNCEPWLH 898 (904)
Q Consensus 887 l~V~~~v~~~l~ 898 (904)
+||+....|...
T Consensus 303 ~PvI~~~~~~~~ 314 (374)
T cd03817 303 LPVVAVDAPGLP 314 (374)
T ss_pred CcEEEeCCCChh
Confidence 999765555543
No 40
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.91 E-value=4.5e-24 Score=231.97 Aligned_cols=279 Identities=19% Similarity=0.250 Sum_probs=191.2
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
++|+++++.|+|. .||++.+++.|++.|.+.||.|.|++-.|++.. .++ ..-
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~-----gir---------------------ylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-----GIR---------------------YLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc-----cee---------------------eec
Confidence 5799999999995 799999999999999999999999999998531 111 113
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.|++||+++.. . .| +...++. -+..+..+.. .++ .++..|||.|...++++-- .+.. .+.-|.+
T Consensus 53 ~glkVyylp~~--v-~~-n~tT~pt--v~~~~Pllr~---i~l---rE~I~ivhghs~fS~lahe-~l~h---artMGlk 116 (426)
T KOG1111|consen 53 NGLKVYYLPAV--V-GY-NQTTFPT--VFSDFPLLRP---ILL---RERIEIVHGHSPFSYLAHE-ALMH---ARTMGLK 116 (426)
T ss_pred CCceEEEEeee--e-ee-cccchhh--hhccCcccch---hhh---hhceEEEecCChHHHHHHH-HHHH---HHhcCce
Confidence 56888877631 0 11 1111110 0000111110 112 3589999999877665422 2111 1245789
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+|-|.+. |..+ +.. -+. . ..+...+...|++||||.+-.+...- ...
T Consensus 117 tVfTdHSlf--Gfad---~~s-----i~~-----------n---~ll~~sL~~id~~IcVshtskentvl-------r~~ 165 (426)
T KOG1111|consen 117 TVFTDHSLF--GFAD---IGS-----ILT-----------N---KLLPLSLANIDRIICVSHTSKENTVL-------RGA 165 (426)
T ss_pred EEEeccccc--cccc---hhh-----hhh-----------c---ceeeeeecCCCcEEEEeecCCCceEE-------Eec
Confidence 999999863 1111 100 000 0 11233456689999999876655432 111
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
..+.|+.+|||.+++..|.|.... .+ +.+..++++++||.++||+|++++
T Consensus 166 --L~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~--S~~i~~ivv~sRLvyrKGiDll~~ 215 (426)
T KOG1111|consen 166 --LAPAKVSVIPNAVVTHTFTPDAAD--------------------------KP--SADIITIVVASRLVYRKGIDLLLE 215 (426)
T ss_pred --cCHhHeeeccceeeccccccCccc--------------------------cC--CCCeeEEEEEeeeeeccchHHHHH
Confidence 357899999999999999984210 01 123467899999999999999999
Q ss_pred HHHHhhc--CCcEEEEEecCCccc-ccH----------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCC
Q 002589 832 AIYRTLE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 886 (904)
Q Consensus 832 AiarLle--~nvqLVLVGdGp~~~-lek----------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~g 886 (904)
+++++.+ ++++|+|+||||.+. +++ .++|...|+|+.||..|+||++++|||.+|
T Consensus 216 iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScG 295 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCG 295 (426)
T ss_pred HHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCC
Confidence 9999976 489999999999542 221 199999999999999999999999999999
Q ss_pred ccccc-CCCc
Q 002589 887 LTVNN-NCEP 895 (904)
Q Consensus 887 l~V~~-~v~~ 895 (904)
++|+. .|.|
T Consensus 296 L~VVsTrVGG 305 (426)
T KOG1111|consen 296 LPVVSTRVGG 305 (426)
T ss_pred CEEEEeecCC
Confidence 99954 4444
No 41
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.91 E-value=8.4e-23 Score=224.94 Aligned_cols=258 Identities=12% Similarity=0.124 Sum_probs=164.0
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~--GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g 589 (904)
|||+++++. .| ..||+++++..++++|.++ ||+|.++++...... . .+.... .. .
T Consensus 1 mkI~~~~~~-~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~---~~~~~~---------------~~-~ 57 (359)
T PRK09922 1 MKIAFIGEA-VS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-A---WLKEIK---------------YA-Q 57 (359)
T ss_pred CeeEEeccc-cc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-H---HHHhcc---------------hh-c
Confidence 899999874 44 3699999999999999999 899999987643210 0 000000 00 0
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCC
Q 002589 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (904)
Q Consensus 590 ~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~g 669 (904)
....+.+. ++ ... . ....+..+++ ..+|||||+|+..+..++.++...+ + ..
T Consensus 58 ~~~~~~~~---------~~------~~~---~----~~~~l~~~l~--~~~~Dii~~~~~~~~~~~~~~~~~~---~-~~ 109 (359)
T PRK09922 58 SFSNIKLS---------FL------RRA---K----HVYNFSKWLK--ETQPDIVICIDVISCLYANKARKKS---G-KQ 109 (359)
T ss_pred ccccchhh---------hh------ccc---H----HHHHHHHHHH--hcCCCEEEEcCHHHHHHHHHHHHHh---C-CC
Confidence 00000000 00 000 0 0122234454 3589999999865544322222221 1 23
Q ss_pred CeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcc
Q 002589 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLH 749 (904)
Q Consensus 670 iPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~ 749 (904)
.+++.+.|.... .. .. . ....+..+|.++++|+..++.+.. . |
T Consensus 110 ~~~~~~~h~~~~-----~~----------~~-----------~-----~~~~~~~~d~~i~~S~~~~~~~~~-~---~-- 152 (359)
T PRK09922 110 FKIFSWPHFSLD-----HK----------KH-----------A-----ECKKITCADYHLAISSGIKEQMMA-R---G-- 152 (359)
T ss_pred CeEEEEecCccc-----cc----------ch-----------h-----hhhhhhcCCEEEEcCHHHHHHHHH-c---C--
Confidence 566777774310 00 00 0 001135699999999998888764 2 2
Q ss_pred cccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEeccc--CccCHH
Q 002589 750 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV--PQKGVH 827 (904)
Q Consensus 750 ~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~--~qKGId 827 (904)
.++.++.+||||+|.+.|.+.. + ...+.++++|+||+. ++||++
T Consensus 153 ----~~~~ki~vi~N~id~~~~~~~~-----------------------------~-~~~~~~~i~~~Grl~~~~~k~~~ 198 (359)
T PRK09922 153 ----ISAQRISVIYNPVEIKTIIIPP-----------------------------P-ERDKPAVFLYVGRLKFEGQKNVK 198 (359)
T ss_pred ----CCHHHEEEEcCCCCHHHccCCC-----------------------------c-ccCCCcEEEEEEEEecccCcCHH
Confidence 2456899999999976442110 0 011347899999997 469999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCccc-ccH------------------------HHHHHhcCeEEEcCCCCCChHHHHHH
Q 002589 828 LIRHAIYRTLELGGQFILLGSSPVPH-IQV------------------------YPILLSSFSFLRKHIFNICNLYIKLG 882 (904)
Q Consensus 828 lLIeAiarLle~nvqLVLVGdGp~~~-lek------------------------e~LyAaADVfVlPS~~EpFGLv~LEA 882 (904)
.+++|+..+.. +++|+|+|+|+... +++ ..+|+.||++|+||.+|+||++++||
T Consensus 199 ~l~~a~~~~~~-~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEA 277 (359)
T PRK09922 199 ELFDGLSQTTG-EWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEA 277 (359)
T ss_pred HHHHHHHhhCC-CeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHH
Confidence 99999998754 79999999997532 111 06788899999999999999999999
Q ss_pred ccCCcccccC
Q 002589 883 QGGDLTVNNN 892 (904)
Q Consensus 883 Mg~gl~V~~~ 892 (904)
|++|+||+..
T Consensus 278 ma~G~Pvv~s 287 (359)
T PRK09922 278 MSYGIPCISS 287 (359)
T ss_pred HHcCCCEEEe
Confidence 9999999544
No 42
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.90 E-value=1.6e-22 Score=228.27 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=134.5
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~ 717 (904)
..+||+||+|.+.++..+..+... +..+.|+++|+|+.+.... .... .+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---~~~~-------------------~~--~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---EVLN-------------------HY--TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---hhhh-------------------hh--hHH
Confidence 457999999998776553333221 1234567889998752110 0000 00 012
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
.+..+..||.|+++|+..++.+.. .| .++.|+.+||||+|.+.|.|....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~--~g--------~~~~ki~vi~nGvd~~~f~~~~~~-------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK--MG--------CPPEKIAVSRMGVDMTRFSPRPVK-------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--cC--------CCHHHEEEcCCCCCHHHcCCCccc--------------------
Confidence 345667899999999988887754 22 346789999999999988653110
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH------------------
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------ 856 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------ 856 (904)
. ..+...|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++
T Consensus 218 -------~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~ 288 (406)
T PRK15427 218 -------A--PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKP 288 (406)
T ss_pred -------c--CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCC
Confidence 0 0133579999999999999999999999875 378999999998542 111
Q ss_pred ----HHHHHhcCeEEEcCCC------CCChHHHHHHccCCcccccC
Q 002589 857 ----YPILLSSFSFLRKHIF------NICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 857 ----e~LyAaADVfVlPS~~------EpFGLv~LEAMg~gl~V~~~ 892 (904)
..+|+.||+||+||.. |+||++++|||++|+||+..
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t 334 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST 334 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEe
Confidence 1899999999999984 99999999999999999653
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.90 E-value=2.9e-22 Score=211.73 Aligned_cols=275 Identities=20% Similarity=0.130 Sum_probs=174.2
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+++++.++|. ..||.+.++..|+++|.++||+|+|+++........ .. . .
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~~-----------~------------~ 52 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQD----KE-----------V------------I 52 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcc----cc-----------c------------c
Confidence 699999988775 479999999999999999999999999764321110 00 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
+......... +. ...................+...+..++. ..+||+||+|.+..... . ++.... ..++|+
T Consensus 53 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dii~~~~~~~~~~-~-~~~~~~---~~~~~~ 123 (359)
T cd03823 53 GVVVYGRPID-EV-LRSALPRDLFHLSDYDNPAVVAEFARLLE--DFRPDVVHFHHLQGLGV-S-ILRAAR---DRGIPI 123 (359)
T ss_pred cceeeccccc-cc-cCCCchhhhhHHHhccCHHHHHHHHHHHH--HcCCCEEEECCccchHH-H-HHHHHH---hcCCCE
Confidence 0000000000 00 00000000000000000112223334444 35899999998743322 1 222111 246999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|+++|+..+.. +.. .. .....|.++++|+..++.+... +
T Consensus 124 i~~~hd~~~~~--~~~---------~~---------------------~~~~~d~ii~~s~~~~~~~~~~-~-------- 162 (359)
T cd03823 124 VLTLHDYWLIC--PRQ---------GL---------------------FKKGGDAVIAPSRFLLDRYVAN-G-------- 162 (359)
T ss_pred EEEEeeeeeec--chh---------hh---------------------hccCCCEEEEeCHHHHHHHHHc-C--------
Confidence 99999863211 000 00 0011289999999888877642 1
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
..+.++.+||||+|...+.+... +.+ .+.++|+|+||+.+.||++.+++|
T Consensus 163 -~~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~---~~~~~i~~~G~~~~~k~~~~li~~ 212 (359)
T cd03823 163 -LFAEKISVIRNGIDLDRAKRPRR--------------------------APP---GGRLRFGFIGQLTPHKGVDLLLEA 212 (359)
T ss_pred -CCccceEEecCCcChhhcccccc--------------------------CCC---CCceEEEEEecCccccCHHHHHHH
Confidence 12468999999999987754210 111 245789999999999999999999
Q ss_pred HHHhhcCCcEEEEEecCCccccc------------------HH--HHHHhcCeEEEcCC-CCCChHHHHHHccCCccccc
Q 002589 833 IYRTLELGGQFILLGSSPVPHIQ------------------VY--PILLSSFSFLRKHI-FNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 833 iarLle~nvqLVLVGdGp~~~le------------------ke--~LyAaADVfVlPS~-~EpFGLv~LEAMg~gl~V~~ 891 (904)
+..+.+.+++|+++|.|+..... .+ .+|+.||++++||. +|+||++++|||++|+||+.
T Consensus 213 ~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~ 292 (359)
T cd03823 213 FKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIA 292 (359)
T ss_pred HHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEE
Confidence 99987668999999998643211 11 89999999999998 79999999999999999965
Q ss_pred CCCc
Q 002589 892 NCEP 895 (904)
Q Consensus 892 ~v~~ 895 (904)
...|
T Consensus 293 ~~~~ 296 (359)
T cd03823 293 SDIG 296 (359)
T ss_pred CCCC
Confidence 5444
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.90 E-value=5.9e-22 Score=209.46 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=190.0
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|+..++|. .||.+.++..++++|++.||+|+++++......... . .. .......
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----~----------~~------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKI----Y----------KG------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCcccccc----c----------cc------ceEEecC
Confidence 699999988875 499999999999999999999999997644221100 0 00 0011235
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCch-hhHHHHHHHhhccCCCCCCe
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~t-alvapL~~~~ya~~gL~giP 671 (904)
|++++.+.... +.....+. ....+..|.......+.....+||+||+|.+.. .......... ..++|
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-----~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLPP----YKKNGLLK---RLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLAR-----LKGAP 126 (394)
T ss_pred CeEEEEEecCC----CCccchHH---HHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHH-----hcCCC
Confidence 66666554210 11111111 111222233333333331256899999998433 2221222221 24799
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+++|+.... ... ..+...... .. ......+.+..+..+|.++++|+..++.+.. .+
T Consensus 127 ~i~~~h~~~~~-----~~~-~~~~~~~~~-----~~---~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~--~~------ 184 (394)
T cd03794 127 FVLEVRDLWPE-----SAV-ALGLLKNGS-----LL---YRLLRKLERLIYRRADAIVVISPGMREYLVR--RG------ 184 (394)
T ss_pred EEEEehhhcch-----hHH-HccCccccc-----hH---HHHHHHHHHHHHhcCCEEEEECHHHHHHHHh--cC------
Confidence 99999986311 000 000000000 00 0011224566778899999999998887752 11
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
.+..++.+||||+|...+.+.... .. ++.++.. .+.++|+|+||+.+.||++.+++
T Consensus 185 --~~~~~~~~i~~~~~~~~~~~~~~~------------------~~-~~~~~~~---~~~~~i~~~G~~~~~k~~~~l~~ 240 (394)
T cd03794 185 --VPPEKISVIPNGVDLELFKPPPAD------------------ES-LRKELGL---DDKFVVLYAGNIGRAQGLDTLLE 240 (394)
T ss_pred --CCcCceEEcCCCCCHHHcCCccch------------------hh-hhhccCC---CCcEEEEEecCcccccCHHHHHH
Confidence 245789999999998877653210 00 2233322 25678999999999999999999
Q ss_pred HHHHhhcC-CcEEEEEecCCccc-ccH-------------------H--HHHHhcCeEEEcCCCCCC-----hHHHHHHc
Q 002589 832 AIYRTLEL-GGQFILLGSSPVPH-IQV-------------------Y--PILLSSFSFLRKHIFNIC-----NLYIKLGQ 883 (904)
Q Consensus 832 AiarLle~-nvqLVLVGdGp~~~-lek-------------------e--~LyAaADVfVlPS~~EpF-----GLv~LEAM 883 (904)
|+..+.+. +++++++|+|+... +.. + .+|+.||++++||..|++ |++++|||
T Consensus 241 ~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~ 320 (394)
T cd03794 241 AAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYM 320 (394)
T ss_pred HHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHH
Confidence 99998765 89999999987532 111 1 899999999999999876 77799999
Q ss_pred cCCcccccCCCc
Q 002589 884 GGDLTVNNNCEP 895 (904)
Q Consensus 884 g~gl~V~~~v~~ 895 (904)
++|+||+....|
T Consensus 321 ~~G~pvi~~~~~ 332 (394)
T cd03794 321 AAGKPVLASVDG 332 (394)
T ss_pred HCCCcEEEecCC
Confidence 999999654333
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.90 E-value=5e-22 Score=237.47 Aligned_cols=292 Identities=15% Similarity=0.091 Sum_probs=173.9
Q ss_pred CCCCC-eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCC------------eEEEEeeCC-C-CCccccccccccccee
Q 002589 508 ISSGL-HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH------------LVEIVLPKY-D-CMQYDRIDDLRALDVV 572 (904)
Q Consensus 508 ~~~~M-kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GH------------eV~VItP~y-~-~l~~~~v~~L~~l~i~ 572 (904)
..++. ||+|+.... ..||.+.++..|+.+|.+.|. .|.|++... . .........+
T Consensus 277 ~~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L------ 346 (694)
T PRK15179 277 PESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATL------ 346 (694)
T ss_pred CCCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHH------
Confidence 34566 999998754 469999999999999999854 344443211 0 0000000001
Q ss_pred eecccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCC-CCcchhh--------HHHHHHHHHHHHHHhCCCccE
Q 002589 573 VESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYG-EHDDFRR--------FSFFSRAALELLLQAGKQPDI 643 (904)
Q Consensus 573 v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~~F~r~~iYg-~~dd~~R--------fs~FsraaLe~Lrq~g~kPDI 643 (904)
.-.|++|+.+... +. .+. ..++ ....+.+ ...+...+..++++ .+|||
T Consensus 347 -----------------~~~Gv~v~~l~~~-~~-~~~--~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDI 403 (694)
T PRK15179 347 -----------------ADAGIPVSVYSDM-QA-WGG--CEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSV 403 (694)
T ss_pred -----------------HhCCCeEEEeccC-Cc-cCc--ccccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcE
Confidence 1246666665421 10 000 0000 0000011 11223445556664 58999
Q ss_pred EEEcCCchhhHHHHHHHhhccCCCCCCeEEE-EecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHh
Q 002589 644 IHCHDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAI 722 (904)
Q Consensus 644 IHaHdW~talvapL~~~~ya~~gL~giPiV~-TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai 722 (904)
||+|...+.+++.+... +.++|+|+ |+|++... ..+ ... .. .+ ......+
T Consensus 404 VH~h~~~a~~lg~lAa~------~~gvPvIv~t~h~~~~~-~~~-~~~-------~~-----------~~---~~l~~~l 454 (694)
T PRK15179 404 VHIWQDGSIFACALAAL------LAGVPRIVLSVRTMPPV-DRP-DRY-------RV-----------EY---DIIYSEL 454 (694)
T ss_pred EEEeCCcHHHHHHHHHH------HcCCCEEEEEeCCCccc-cch-hHH-------HH-----------HH---HHHHHHH
Confidence 99998877665433222 24678765 66765310 000 000 00 00 0011122
Q ss_pred hh--cCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHH
Q 002589 723 VF--SNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK 800 (904)
Q Consensus 723 ~~--AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk 800 (904)
.. ++.++++|...++.+.. .++ .+..++.|||||||...|.|... .+. .+.
T Consensus 455 ~~~~~~i~Vs~S~~~~~~l~~-~~g--------~~~~kI~VI~NGVd~~~f~~~~~-----------------~~~-~~~ 507 (694)
T PRK15179 455 LKMRGVALSSNSQFAAHRYAD-WLG--------VDERRIPVVYNGLAPLKSVQDDA-----------------CTA-MMA 507 (694)
T ss_pred HhcCCeEEEeCcHHHHHHHHH-HcC--------CChhHEEEECCCcCHHhcCCCch-----------------hhH-HHH
Confidence 23 34566667666666544 222 35689999999999988865311 010 011
Q ss_pred Hc--CCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH-------------------
Q 002589 801 HL--GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------- 856 (904)
Q Consensus 801 ~L--GL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------- 856 (904)
.+ +++ .+.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++
T Consensus 508 ~~~~~~~---~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~d 584 (694)
T PRK15179 508 QFDARTS---DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRR 584 (694)
T ss_pred hhccccC---CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcch
Confidence 12 222 245789999999999999999999998875 479999999998542 211
Q ss_pred -HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 857 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 857 -e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
..+|++||+||+||.+|+||++++|||++|+||+.
T Consensus 585 v~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 585 VGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 18999999999999999999999999999999954
No 46
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.90 E-value=3.8e-22 Score=214.20 Aligned_cols=266 Identities=20% Similarity=0.149 Sum_probs=173.5
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||+|++.. + ..||.+.++..++++|.++||+|+|+++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999863 3 36999999999999999999999999754210
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
+ . ..+. ..+|||||+|.+..+.+....+..+ +.++|
T Consensus 43 -------~--------~-----------------------~~~~--~~~~diih~~~~~~~~~~~~~~~~~----~~~~~ 78 (365)
T cd03825 43 -------L--------I-----------------------SKIE--IINADIVHLHWIHGGFLSIEDLSKL----LDRKP 78 (365)
T ss_pred -------h--------h-----------------------hChh--cccCCEEEEEccccCccCHHHHHHH----HcCCC
Confidence 0 0 0011 2479999999876655433333322 14799
Q ss_pred EEEEecCCcccC---CCChh---hhhhcCCcccccCCcccccccccccchhhhhHHh-hhcCEEEEcCHHHHHHHHhhcC
Q 002589 672 VCFTCHNFEYQG---TAPAK---ELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAI-VFSNIVTTVSPSYAQEVRTSEG 744 (904)
Q Consensus 672 iV~TIHnl~~qG---~~p~~---~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai-~~AD~VItVS~syaeeI~~~~~ 744 (904)
+|+|+|++.... ..+.. ....++..+.. ...... + .........+..+ ..++.++++|+..++.+.. .+
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~-~~ 154 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQL-GSYPEK-D-LSRWIWRRKRKAWADLNLTIVAPSRWLADCARS-SS 154 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCCCCC-CCCCcc-c-HHHHHHHHHHHHhccCCcEEEehhHHHHHHHHh-cc
Confidence 999999864211 00000 00011100000 000000 0 0000011111122 3467899999877766654 21
Q ss_pred CCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccC--
Q 002589 745 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP-- 822 (904)
Q Consensus 745 g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~-- 822 (904)
..+..++.+||||+|.+.|.|.. +...++.++++. +.++++++|+...
T Consensus 155 --------~~~~~~~~vi~ngi~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 204 (365)
T cd03825 155 --------LFKGIPIEVIPNGIDTTIFRPRD-------------------KREARKRLGLPA---DKKIILFGAVGGTDP 204 (365)
T ss_pred --------ccCCCceEEeCCCCcccccCCCc-------------------HHHHHHHhCCCC---CCeEEEEEecCCCcc
Confidence 13457899999999999886532 344567788763 4567777777765
Q ss_pred ccCHHHHHHHHHHhhc---CCcEEEEEecCCcccc-------------c-HH---HHHHhcCeEEEcCCCCCChHHHHHH
Q 002589 823 QKGVHLIRHAIYRTLE---LGGQFILLGSSPVPHI-------------Q-VY---PILLSSFSFLRKHIFNICNLYIKLG 882 (904)
Q Consensus 823 qKGIdlLIeAiarLle---~nvqLVLVGdGp~~~l-------------e-ke---~LyAaADVfVlPS~~EpFGLv~LEA 882 (904)
.||++.+++|+..+.+ .+++++++|+|+.... . .+ .+|+.||++++||.+|+||++++||
T Consensus 205 ~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Ea 284 (365)
T cd03825 205 RKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEA 284 (365)
T ss_pred ccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHH
Confidence 8999999999999875 5789999998764311 1 11 7899999999999999999999999
Q ss_pred ccCCcccccCC
Q 002589 883 QGGDLTVNNNC 893 (904)
Q Consensus 883 Mg~gl~V~~~v 893 (904)
|++|+||+...
T Consensus 285 m~~g~PvI~~~ 295 (365)
T cd03825 285 LACGTPVVAFD 295 (365)
T ss_pred HhcCCCEEEec
Confidence 99999997533
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.90 E-value=4.6e-22 Score=211.09 Aligned_cols=283 Identities=19% Similarity=0.153 Sum_probs=180.8
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|+..|+|. .||.+.++..|+++|.++||+|+|+++........ . . .
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----~-----------~-------------~ 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG----P-----------A-------------R 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC----C-----------C-------------C
Confidence 699999988885 59999999999999999999999999874321100 0 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
.+.+..+... .+. .+.. .+..+ ......++ ..+||+||+|.+.........+.. ..++|+
T Consensus 51 ~~~~~~~~~~----~~~---~~~~--~~~~~----~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~-----~~~~~~ 110 (364)
T cd03814 51 VVPVPSVPLP----GYP---EIRL--ALPPR----RRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR-----RLGIPV 110 (364)
T ss_pred ceeecccccC----ccc---ceEe--cccch----hhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH-----HcCCCE
Confidence 0111101000 000 0000 00000 11122222 358999999975432211222221 257999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++++|+.... ........ . . ......+.+.....+|.++++|+...+.... .
T Consensus 111 i~~~~~~~~~------~~~~~~~~--~------~----~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~-------- 162 (364)
T cd03814 111 VTSYHTDFPE------YLRYYGLG--P------L----SWLAWAYLRWFHNRADRVLVPSPSLADELRA--R-------- 162 (364)
T ss_pred EEEEecChHH------Hhhhcccc--h------H----hHhhHHHHHHHHHhCCEEEeCCHHHHHHHhc--c--------
Confidence 9999975210 00000000 0 0 0000133456677899999999988774432 1
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
...++.+++||+|.+.|.|... +...++.++ . .+.++++|+||+.+.||++.+++|
T Consensus 163 --~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~---~~~~~i~~~G~~~~~k~~~~~i~~ 218 (364)
T cd03814 163 --GFRRVRLWPRGVDTELFHPRRR------------------DEALRARLG-P---PDRPVLLYVGRLAPEKNLEALLDA 218 (364)
T ss_pred --CCCceeecCCCccccccCcccc------------------cHHHHHHhC-C---CCCeEEEEEeccccccCHHHHHHH
Confidence 1357899999999988876421 112234444 2 245789999999999999999999
Q ss_pred HHHhhc-CCcEEEEEecCCccc-c-------------cH---HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCCC
Q 002589 833 IYRTLE-LGGQFILLGSSPVPH-I-------------QV---YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 894 (904)
Q Consensus 833 iarLle-~nvqLVLVGdGp~~~-l-------------ek---e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~ 894 (904)
+..+.+ .+++|+++|+|+... + .. ..+|+.||++|+||..|+||++++|||++|+||+....
T Consensus 219 ~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~ 298 (364)
T cd03814 219 DLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDA 298 (364)
T ss_pred HHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCC
Confidence 999876 379999999986542 1 01 18999999999999999999999999999999966555
Q ss_pred ccc
Q 002589 895 PWL 897 (904)
Q Consensus 895 ~~l 897 (904)
|..
T Consensus 299 ~~~ 301 (364)
T cd03814 299 GGP 301 (364)
T ss_pred CCc
Confidence 543
No 48
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.90 E-value=3.1e-22 Score=213.03 Aligned_cols=281 Identities=16% Similarity=0.104 Sum_probs=183.1
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..+.|. ..||+++++.+|+++|++.||.|+++++.......... .. .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~---------------~~-----------~ 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLP---------------LR-----------A 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccccccc---------------ch-----------h
Confidence 688888877774 47999999999999999999999999987553221100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
.... .. . .... ... ..+..+.......+. ..+|||||+|++..... . ..++|+
T Consensus 54 ~~~~--~~--~---~~~~-~~~------~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~-----~------~~~~~~ 106 (365)
T cd03809 54 ALRL--LL--R---LPRR-LLW------GLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL-----R------LRGVPV 106 (365)
T ss_pred cccc--cc--c---cccc-ccc------chhhHHHHHHHHHhh--hcCCCeeeecccccCcc-----c------CCCCCE
Confidence 0000 00 0 0000 000 001011111111222 25899999998765432 1 257999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|+++|++..... +.. . .... ......+.+..+..+|.++++|+..++.+... ++
T Consensus 107 i~~~hd~~~~~~-~~~-~-----~~~~-----------~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 160 (365)
T cd03809 107 VVTIHDLIPLRF-PEY-F-----SPGF-----------RRYFRRLLRRALRRADAIITVSEATKRDLLRY-LG------- 160 (365)
T ss_pred EEEeccchhhhC-ccc-C-----CHHH-----------HHHHHHHHHHHHHHcCEEEEccHHHHHHHHHH-hC-------
Confidence 999998742110 000 0 0000 00112345677889999999999998888652 21
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.+..++.+||||+|...+.+..+ .. +...+.. .+.++|+|+||+.+.||++.+++|
T Consensus 161 -~~~~~~~vi~~~~~~~~~~~~~~-------------------~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~~l~~ 216 (365)
T cd03809 161 -VPPDKIVVIPLGVDPRFRPPPAE-------------------AE-VLRALYL---LPRPYFLYVGTIEPRKNLERLLEA 216 (365)
T ss_pred -cCHHHEEeeccccCccccCCCch-------------------HH-HHHHhcC---CCCCeEEEeCCCccccCHHHHHHH
Confidence 24578999999999987755321 01 2222322 256789999999999999999999
Q ss_pred HHHhhcC--CcEEEEEecCCcccc---c-------------------H--HHHHHhcCeEEEcCCCCCChHHHHHHccCC
Q 002589 833 IYRTLEL--GGQFILLGSSPVPHI---Q-------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGD 886 (904)
Q Consensus 833 iarLle~--nvqLVLVGdGp~~~l---e-------------------k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~g 886 (904)
+..+.+. +++|+++|.++.... . . ..+|+.||++++||.+|+||++++|||++|
T Consensus 217 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G 296 (365)
T cd03809 217 FARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACG 296 (365)
T ss_pred HHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCC
Confidence 9999865 489999998653310 0 0 189999999999999999999999999999
Q ss_pred cccccCCCccc
Q 002589 887 LTVNNNCEPWL 897 (904)
Q Consensus 887 l~V~~~v~~~l 897 (904)
+||+....|.+
T Consensus 297 ~pvI~~~~~~~ 307 (365)
T cd03809 297 TPVIASNISSL 307 (365)
T ss_pred CcEEecCCCCc
Confidence 99976555443
No 49
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.89 E-value=2.6e-21 Score=206.96 Aligned_cols=264 Identities=15% Similarity=0.089 Sum_probs=176.4
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||+|++..|+| |.+.++..++++|.+.||+|+|+++......... .. . ...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~----~~----------~----------~~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVH----PE----------D----------RAE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccc----cc----------c----------ccc
Confidence 69999987644 3679999999999999999999997754221000 00 0 000
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
+..+. +. . .......+...+...++ ..+|||||+|.+........+... +.++|+
T Consensus 52 ~~~~~---------~~------~---~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LARTR---------YL------A---RSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccchH---------HH------H---HHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 00000 00 0 00111112222333333 358999999987543332223222 247899
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++|+|+........ ....+..+..+|.++++|+..++.+... ++
T Consensus 107 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~vi~~s~~~~~~l~~~-~~------- 150 (355)
T cd03799 107 SFTAHGKDIFRSPD----------------------------AIDLDEKLARADFVVAISEYNRQQLIRL-LG------- 150 (355)
T ss_pred EEEEecccccccCc----------------------------hHHHHHHHhhCCEEEECCHHHHHHHHHh-cC-------
Confidence 99999764211000 0134556778999999999998888752 22
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
....++.+||||+|.+.|.+.. ... ..+.+.|+|+||+.+.||++.+++|
T Consensus 151 -~~~~~~~vi~~~~d~~~~~~~~--------------------------~~~---~~~~~~i~~~g~~~~~k~~~~l~~~ 200 (355)
T cd03799 151 -CDPDKIHVVHCGVDLERFPPRP--------------------------PPP---PGEPLRILSVGRLVEKKGLDYLLEA 200 (355)
T ss_pred -CCcccEEEEeCCcCHHHcCCcc--------------------------ccc---cCCCeEEEEEeeeccccCHHHHHHH
Confidence 2457899999999998775531 000 1244689999999999999999999
Q ss_pred HHHhhcC--CcEEEEEecCCccc-cc--------------------H--HHHHHhcCeEEEcCCC------CCChHHHHH
Q 002589 833 IYRTLEL--GGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIF------NICNLYIKL 881 (904)
Q Consensus 833 iarLle~--nvqLVLVGdGp~~~-le--------------------k--e~LyAaADVfVlPS~~------EpFGLv~LE 881 (904)
+..+.+. +++|+++|.|+... +. . ..+|+.||++++||.+ |+||++++|
T Consensus 201 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~E 280 (355)
T cd03799 201 LALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLME 280 (355)
T ss_pred HHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHH
Confidence 9998763 89999999986431 10 1 1899999999999999 999999999
Q ss_pred HccCCcccccCCCcc
Q 002589 882 GQGGDLTVNNNCEPW 896 (904)
Q Consensus 882 AMg~gl~V~~~v~~~ 896 (904)
||++|+||+....|.
T Consensus 281 a~a~G~Pvi~~~~~~ 295 (355)
T cd03799 281 AMAMGLPVISTDVSG 295 (355)
T ss_pred HHHcCCCEEecCCCC
Confidence 999999997544443
No 50
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.89 E-value=5.1e-21 Score=199.29 Aligned_cols=284 Identities=22% Similarity=0.353 Sum_probs=185.2
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..++|. .||.+.++..|+++|.+.||+|+++++......... .. .
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~-----~~----------------------~ 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE-----EV----------------------G 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee-----ee----------------------c
Confidence 699999987775 799999999999999999999999998754321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
......... .. ..+. ......+......++. ..+||+||+|++....... .... ..++|+
T Consensus 52 ~~~~~~~~~------~~--~~~~----~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~-~~~~-----~~~~~~ 111 (374)
T cd03801 52 GIVVVRPPP------LL--RVRR----LLLLLLLALRLRRLLR--RERFDVVHAHDWLALLAAA-LAAR-----LLGIPL 111 (374)
T ss_pred CcceecCCc------cc--ccch----hHHHHHHHHHHHHHhh--hcCCcEEEEechhHHHHHH-HHHH-----hcCCcE
Confidence 000000000 00 0000 0011112222333333 3589999999988765422 1111 357999
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++++|+..+......... . ........+..+..+|.++++|+..++.+.. .++
T Consensus 112 i~~~h~~~~~~~~~~~~~-----~--------------~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~-~~~------- 164 (374)
T cd03801 112 VLTVHGLEFGRPGNELGL-----L--------------LKLARALERRALRRADRIIAVSEATREELRE-LGG------- 164 (374)
T ss_pred EEEeccchhhccccchhH-----H--------------HHHHHHHHHHHHHhCCEEEEecHHHHHHHHh-cCC-------
Confidence 999998753221100000 0 0011123456677899999999998888765 221
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
..+.++.++|||+|...|.+.. ...+...+.. .+.+.|+|+||+.+.||++.+++|
T Consensus 165 -~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~---~~~~~i~~~g~~~~~k~~~~~i~~ 220 (374)
T cd03801 165 -VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP---EDEPVILFVGRLVPRKGVDLLLEA 220 (374)
T ss_pred -CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc---CCCeEEEEecchhhhcCHHHHHHH
Confidence 2236899999999998776531 1112222322 255789999999999999999999
Q ss_pred HHHhhcC--CcEEEEEecCCccc-cc--------------------H--HHHHHhcCeEEEcCCCCCChHHHHHHccCCc
Q 002589 833 IYRTLEL--GGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 833 iarLle~--nvqLVLVGdGp~~~-le--------------------k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl 887 (904)
+..+.+. +++|+++|+|+... +. . ..+|+.||++++||.+|++|++++|||++|+
T Consensus 221 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~ 300 (374)
T cd03801 221 LAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL 300 (374)
T ss_pred HHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCC
Confidence 9998764 79999999875431 10 0 1899999999999999999999999999999
Q ss_pred ccccCCCcc
Q 002589 888 TVNNNCEPW 896 (904)
Q Consensus 888 ~V~~~v~~~ 896 (904)
||+....|.
T Consensus 301 pvI~~~~~~ 309 (374)
T cd03801 301 PVVASDVGG 309 (374)
T ss_pred cEEEeCCCC
Confidence 996655343
No 51
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.88 E-value=1.7e-21 Score=202.89 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=180.2
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..+. .||.+.++..|+++|.+.||+|+|+++......... . ... ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~---~-----------~~~----------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLEL---L-----------PSN----------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccc---c-----------ccc----------hh
Confidence 6888988543 599999999999999999999999997654321100 0 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCC-chhhHHHHHHHhhccCCCCCCe
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW-~talvapL~~~~ya~~gL~giP 671 (904)
........ . ..+. ...+...+..+++. .+||+||+|++ .+.++ ..+... .++|
T Consensus 53 ~~~~~~~~-------~---~~~~-------~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~-~~~~~~------~~~~ 106 (353)
T cd03811 53 LIPVRVLK-------L---KSLR-------DLLAILRLRRLLRK--EKPDVVISHLTTTPNVL-ALLAAR------LGTK 106 (353)
T ss_pred hhceeeee-------c---cccc-------chhHHHHHHHHHHh--cCCCEEEEcCccchhHH-HHHHhh------cCCc
Confidence 00000000 0 0000 01122333344543 48999999997 44333 222111 2789
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+++|+.......... .. ....+..+..+|.++++|+..++.+... ++
T Consensus 107 ~i~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 155 (353)
T cd03811 107 LIVWEHNSLSLELKRKL----------------------RL--LLLIRKLYRRADKIVAVSEGVKEDLLKL-LG------ 155 (353)
T ss_pred eEEEEcCcchhhhccch----------------------hH--HHHHHhhccccceEEEeccchhhhHHHh-hc------
Confidence 99999987422100000 00 0234556778999999999988887652 21
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
.+..++.+||||+|.+.|.+.... .. .++.. .+.++|+|+||+.+.||++.+++
T Consensus 156 --~~~~~~~vi~~~~~~~~~~~~~~~------------------~~---~~~~~---~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 156 --IPPDKIEVIYNPIDIEEIRALAEE------------------PL---ELGIP---PDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred --CCccccEEecCCcChhhcCcccch------------------hh---hcCCC---CCceEEEEEecchhhcChHHHHH
Confidence 235789999999999877653210 00 22332 35688999999999999999999
Q ss_pred HHHHhhcC--CcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 832 AIYRTLEL--GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 832 AiarLle~--nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
|+..+.+. +++|+++|.|+... +.+ ..+|+.||++|+||.+|+||++++|||++|+|
T Consensus 210 ~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P 289 (353)
T cd03811 210 AFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP 289 (353)
T ss_pred HHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC
Confidence 99998764 89999999887432 110 18999999999999999999999999999999
Q ss_pred cccCCCcc
Q 002589 889 VNNNCEPW 896 (904)
Q Consensus 889 V~~~v~~~ 896 (904)
|+....|.
T Consensus 290 vI~~~~~~ 297 (353)
T cd03811 290 VVATDCPG 297 (353)
T ss_pred EEEcCCCC
Confidence 97654443
No 52
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.88 E-value=4.1e-21 Score=204.45 Aligned_cols=269 Identities=15% Similarity=0.074 Sum_probs=171.6
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++|++ ++|. .||+++++..|+++|.+.||+|+|++......... . ... ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~------~---------~~~----------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL------Y---------GGE----------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc------C---------CCc----------cc
Confidence 6899986 5563 69999999999999999999999998654321100 0 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhcc-CCCCCCe
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVP-KGLNSAR 671 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~-~gL~giP 671 (904)
+.... . .+. ...+ ..+...++ ..+|||||+|.|.+.+. +..+..... ....++|
T Consensus 53 ~~~~~--~------------~~~----~~~~----~~~~~~~~--~~~~dii~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (366)
T cd03822 53 VVRVI--V------------LDN----PLDY----RRAARAIR--LSGPDVVVIQHEYGIFG-GEAGLYLLLLLRGLGIP 107 (366)
T ss_pred ceeee--e------------cCC----chhH----HHHHHHHh--hcCCCEEEEeecccccc-chhhHHHHHHHhhcCCC
Confidence 00000 0 000 0011 11223344 35899999998654221 111111000 0125799
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|+++|+.... .+. .....+.+..+..+|.++++|....+++...
T Consensus 108 ~i~~~h~~~~~--~~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~--------- 152 (366)
T cd03822 108 VVVTLHTVLLH--EPR------------------------PGDRALLRLLLRRADAVIVMSSELLRALLLR--------- 152 (366)
T ss_pred EEEEEecCCcc--ccc------------------------hhhhHHHHHHHhcCCEEEEeeHHHHHHHHhh---------
Confidence 99999986110 000 0001233556778999999984444444321
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 831 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIe 831 (904)
..+.++.+||||+|...+.+.. . . +..+.+ .+.++|+|+||+.+.||++.+++
T Consensus 153 --~~~~~~~~i~~~~~~~~~~~~~-------------------~--~-~~~~~~---~~~~~i~~~G~~~~~K~~~~ll~ 205 (366)
T cd03822 153 --AYPEKIAVIPHGVPDPPAEPPE-------------------S--L-KALGGL---DGRPVLLTFGLLRPYKGLELLLE 205 (366)
T ss_pred --cCCCcEEEeCCCCcCcccCCch-------------------h--h-HhhcCC---CCCeEEEEEeeccCCCCHHHHHH
Confidence 1136899999999987654321 0 0 222222 25678999999999999999999
Q ss_pred HHHHhhc--CCcEEEEEecCCccc--c--------c----------------H---HHHHHhcCeEEEcCCCC--CChHH
Q 002589 832 AIYRTLE--LGGQFILLGSSPVPH--I--------Q----------------V---YPILLSSFSFLRKHIFN--ICNLY 878 (904)
Q Consensus 832 AiarLle--~nvqLVLVGdGp~~~--l--------e----------------k---e~LyAaADVfVlPS~~E--pFGLv 878 (904)
|+..+.+ .+++|+++|+|+... . . . ..+|+.||++++||.+| +||++
T Consensus 206 a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~ 285 (366)
T cd03822 206 ALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGV 285 (366)
T ss_pred HHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchH
Confidence 9999876 379999999875321 0 0 1 18999999999999999 99999
Q ss_pred HHHHccCCcccccCCCcc
Q 002589 879 IKLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 879 ~LEAMg~gl~V~~~v~~~ 896 (904)
++|||++|+||+....|.
T Consensus 286 ~~Ea~a~G~PvI~~~~~~ 303 (366)
T cd03822 286 LAYAIGFGKPVISTPVGH 303 (366)
T ss_pred HHHHHHcCCCEEecCCCC
Confidence 999999999997655554
No 53
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.88 E-value=1e-21 Score=212.73 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=136.1
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~ 717 (904)
..+|||||+|....++.+..+.+ ..++|+|+|+|+.+....... ..+. . +.....+
T Consensus 80 ~~~~dvvh~~~~~~~~~~~~~~~------~~~~p~i~~~h~~~~~~~~~~---~~~~--~-------------~~~~~~~ 135 (367)
T cd05844 80 RHRPDLVHAHFGFDGVYALPLAR------RLGVPLVVTFHGFDATTSLAL---LLRS--R-------------WALYARR 135 (367)
T ss_pred hhCCCEEEeccCchHHHHHHHHH------HcCCCEEEEEeCccccccchh---hccc--c-------------hhHHHHH
Confidence 35899999997665543222222 257999999998642211000 0000 0 0001123
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
.+..+..+|.|+++|+..++.+... | .++.++.++|||+|.+.|.|...
T Consensus 136 ~~~~~~~~d~ii~~s~~~~~~~~~~----~------~~~~~i~vi~~g~d~~~~~~~~~--------------------- 184 (367)
T cd05844 136 RRRLARRAALFIAVSQFIRDRLLAL----G------FPPEKVHVHPIGVDTAKFTPATP--------------------- 184 (367)
T ss_pred HHHHHHhcCEEEECCHHHHHHHHHc----C------CCHHHeEEecCCCCHHhcCCCCC---------------------
Confidence 4556678999999999888877642 2 24578999999999987765310
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH------------------
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------ 856 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------ 856 (904)
..+.+.|+|+||+.+.||++.+++|+..+.+ .+++|+++|+|+... ++.
T Consensus 185 ----------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (367)
T cd05844 185 ----------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQP 254 (367)
T ss_pred ----------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 1134689999999999999999999999875 479999999986431 110
Q ss_pred ----HHHHHhcCeEEEcCC------CCCChHHHHHHccCCcccccCCCc
Q 002589 857 ----YPILLSSFSFLRKHI------FNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 857 ----e~LyAaADVfVlPS~------~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
..+|+.||++|+||. .|+||++++|||++|+||+....|
T Consensus 255 ~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~ 303 (367)
T cd05844 255 HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG 303 (367)
T ss_pred HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC
Confidence 188999999999997 499999999999999999654444
No 54
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.88 E-value=5.1e-21 Score=199.42 Aligned_cols=259 Identities=17% Similarity=0.141 Sum_probs=171.7
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++..+.| .||.+.++..|+++|.+.||+|+|+++....... . . ...
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--------~--------~-----------~~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPPF--------Y--------E-----------LDP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc--------c--------c-----------cCC
Confidence 68999987766 6999999999999999999999999977543000 0 0 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
++.+..+.... .. ..+ ....+...+..+++ ..+||+||+|++....+ . .... ...+|+
T Consensus 51 ~~~~~~~~~~~----~~--~~~-------~~~~~~~~~~~~l~--~~~~d~i~~~~~~~~~~---~-~~~~---~~~~~~ 108 (348)
T cd03820 51 KIKVIDLGDKR----DS--KLL-------ARFKKLRRLRKLLK--NNKPDVVISFLTSLLTF---L-ASLG---LKIVKL 108 (348)
T ss_pred ccceeeccccc----cc--chh-------ccccchHHHHHhhc--ccCCCEEEEcCchHHHH---H-HHHh---hccccE
Confidence 23333222100 00 000 00111122233443 35899999998772111 1 1111 122599
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|++.|+....... . .......+..+..+|.++++|+..+. ... .
T Consensus 109 i~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~d~ii~~s~~~~~-~~~--~-------- 152 (348)
T cd03820 109 IVSEHNSPDAYKK--R-----------------------LRRLLLRRLLYRRADAVVVLTEEDRA-LYY--K-------- 152 (348)
T ss_pred EEecCCCccchhh--h-----------------------hHHHHHHHHHHhcCCEEEEeCHHHHH-Hhh--c--------
Confidence 9999976321100 0 00011346677889999999988762 111 1
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
....++.+||||++...+.+. . ..+.+.++|+||+.+.||++.+++|
T Consensus 153 -~~~~~~~vi~~~~~~~~~~~~-----------------------------~---~~~~~~i~~~g~~~~~K~~~~l~~~ 199 (348)
T cd03820 153 -KFNKNVVVIPNPLPFPPEEPS-----------------------------S---DLKSKRILAVGRLVPQKGFDLLIEA 199 (348)
T ss_pred -cCCCCeEEecCCcChhhcccc-----------------------------C---CCCCcEEEEEEeeccccCHHHHHHH
Confidence 235789999999998755431 0 1245789999999999999999999
Q ss_pred HHHhhc--CCcEEEEEecCCccc-ccH--------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 833 IYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 833 iarLle--~nvqLVLVGdGp~~~-lek--------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
+..+.+ .+++|+|+|+|+... +.+ ..+|+.||++++||.+|+||++++|||++|+||
T Consensus 200 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pv 279 (348)
T cd03820 200 WAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPV 279 (348)
T ss_pred HHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCE
Confidence 999874 489999999987542 110 189999999999999999999999999999999
Q ss_pred ccC
Q 002589 890 NNN 892 (904)
Q Consensus 890 ~~~ 892 (904)
+..
T Consensus 280 i~~ 282 (348)
T cd03820 280 ISF 282 (348)
T ss_pred EEe
Confidence 654
No 55
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.88 E-value=2.1e-21 Score=227.67 Aligned_cols=414 Identities=14% Similarity=0.130 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHH----Hhhhhhhh
Q 002589 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL----IIDGWLLE 459 (904)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll----~~d~~~~~ 459 (904)
..++..+|.+|.|-+.+ ||..-++- .+-|+.|+.+|..+..|..-. .+.|-=++| |+--.+.. .+|.+
T Consensus 175 r~~~~~~~e~e~~~~~~--~~~~~~~~-~~~~~k~k~~~k~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 246 (794)
T PLN02501 175 RALKTRFRELEKRSESL--EIFGGFKN-SEFVEKLKSSLKAIYKEPQES-KDVPPLDVP-ELLAYLVRQSEPFLDQL--- 246 (794)
T ss_pred HHHHHHHHHHHhhcchH--HHhcccch-HHHHHHHHHHHHhhhcCcccc-ccCCCcchH-HHHHHHHhhccchhhhh---
Confidence 35677888999887766 78777666 566888888888887776654 555555565 33332222 12333
Q ss_pred cccChHHHHHHHHHHHhhcCcchhhhHHhh---------hhhhhh----hHHhhh--------hc-cCC----CCCCCCe
Q 002589 460 KKLSTSEAKLLREMVWKRNGRIRDAYMECK---------EKNEHE----AISTFL--------KL-TSS----SISSGLH 513 (904)
Q Consensus 460 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~--------~~-~~~----~~~~~Mk 513 (904)
-|-.+--..+++++..+..... .|-... .+...| |.+-+. ++ +.+ .+.++-+
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 324 (794)
T PLN02501 247 -GVRKDICDKIVESLCSKRKNQL-LLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHELSDGKRH 324 (794)
T ss_pred -hhhHHHHHHHHHHHHhhccccc-cccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccccccCCCe
Confidence 1222223455555543211111 111100 000000 111000 01 111 1234579
Q ss_pred EEEEcCccCCCcCCCcHHHHHHHHHHHHHHC-CCeEEEEeeCCCCCcccccccccccceeeecccCCcc-cc--ceeee-
Q 002589 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRL-FK--NKVWV- 588 (904)
Q Consensus 514 ILhIt~E~~P~akvGGLg~vV~~LarAL~k~-GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~-~~--~~V~~- 588 (904)
|.++|+-..|+ .-|.++--.=-|-.|++. |+.|+.+.|.-...+...+.. -++ .|..+. .+ ++-|-
T Consensus 325 ~~ivTtAslPW--mTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~---~~~----~F~~p~eQe~~ir~wl~ 395 (794)
T PLN02501 325 VAIVTTASLPW--MTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYP---NNL----TFSSPEEQESYIRNWLE 395 (794)
T ss_pred EEEEEcccCcc--cccccccHHHHHHHhcccCCceEEEEEecCCccccccccC---CCc----ccCCHHHHHHHHHHHHH
Confidence 99999988898 345444444445557877 799999999854221111100 000 011100 00 11121
Q ss_pred ---eeeCCeeEEEeCCCCCCccccc--CCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCch-hhHH-HHHHHh
Q 002589 589 ---STIEGLPVYFIEPHHPDKFFWR--GQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVA-PLYWDL 661 (904)
Q Consensus 589 ---g~v~GV~V~fIdp~~Ps~~F~r--~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~t-alva-pL~~~~ 661 (904)
+...++.+.|.+. .|.. ..+++ .-.+.+.+. .++|||||++.... +.+. +..|..
T Consensus 396 ~r~g~~~~~~i~fYpg-----~~~~~~~SI~p-----------~gdI~~~L~--~f~PDVVHLatP~~LGw~~~Glr~Ar 457 (794)
T PLN02501 396 ERIGFKADFKISFYPG-----KFSKERRSIIP-----------AGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTD 457 (794)
T ss_pred HhcCCCCCceEEeecc-----hhccCCccccc-----------hHHHHHHhh--ccCCCEEEECCchhhccHHHHHHHHH
Confidence 1122333333321 1211 11221 112223333 46899999998643 3320 222322
Q ss_pred hccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccch-hhhhHHhhhcCEEEEcCHHHHHHHH
Q 002589 662 YVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEVR 740 (904)
Q Consensus 662 ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~i-n~lK~ai~~AD~VItVS~syaeeI~ 740 (904)
. .+ |+|.++|+-. . .++...+.. .++.. ....+ ++++.+ |||.|+++|.... ++.
T Consensus 458 ----K-l~-PVVasyHTny-~-----eYl~~y~~g--------~L~~~-llk~l~~~v~r~--hcD~VIaPS~atq-~L~ 513 (794)
T PLN02501 458 ----K-FN-HVVGVVHTNY-L-----EYIKREKNG--------ALQAF-FVKHINNWVTRA--YCHKVLRLSAATQ-DLP 513 (794)
T ss_pred ----H-cC-CeEEEEeCCc-H-----HHHhHhcch--------hHHHH-HHHHHHHHHHHh--hCCEEEcCCHHHH-Hhc
Confidence 1 34 8999999642 1 111111110 00000 00000 111221 2899999996554 321
Q ss_pred hhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecc
Q 002589 741 TSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL 820 (904)
Q Consensus 741 ~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL 820 (904)
. ......||||++.|.|... ...++.+|++. ..+.++|+|||
T Consensus 514 ---------------~-~vI~nVnGVDte~F~P~~r-------------------~~~~r~lgi~~---~~kgiLfVGRL 555 (794)
T PLN02501 514 ---------------K-SVICNVHGVNPKFLKIGEK-------------------VAEERELGQQA---FSKGAYFLGKM 555 (794)
T ss_pred ---------------c-cceeecccccccccCCcch-------------------hHHHHhcCCcc---ccCceEEEEcc
Confidence 1 1122237999999988521 11224567652 23458999999
Q ss_pred cCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH------------------HHHHHhcCeEEEcCCCCCChHHH
Q 002589 821 VPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYI 879 (904)
Q Consensus 821 ~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------e~LyAaADVfVlPS~~EpFGLv~ 879 (904)
.++||++.|++|+..+.. .+++|+|+|+||... +++ ..+|+.+|+||+||.+|+||+|+
T Consensus 556 a~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVl 635 (794)
T PLN02501 556 VWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTAT 635 (794)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHH
Confidence 999999999999998865 379999999999753 221 16999999999999999999999
Q ss_pred HHHccCCcccccCCCcc
Q 002589 880 KLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 880 LEAMg~gl~V~~~v~~~ 896 (904)
+|||++|+||+.-..|.
T Consensus 636 LEAMA~GlPVVATd~pG 652 (794)
T PLN02501 636 AEALAMGKFVVCADHPS 652 (794)
T ss_pred HHHHHcCCCEEEecCCC
Confidence 99999999997655444
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.88 E-value=1.3e-20 Score=197.31 Aligned_cols=270 Identities=19% Similarity=0.154 Sum_probs=179.1
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||++++.. .||.+.++..++++|.+.||+|+|+++....... . ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----~-----------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----L-----------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----c-----------------------ccC
Confidence 68889874 5899999999999999999999999876432100 0 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|+.++.++.. +.... . .+.......+..+++ ..+|||||+|.+.++.++.+.... ....++
T Consensus 47 ~~~~~~~~~~-------~~~~~----~-~~~~~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD-------RRGIN----P-FKDLKALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEecccc-------ccccC----h-HhHHHHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 4444444321 00000 0 111111222334444 358999999987665543333221 246788
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
++++|+..+...... . . ......+.+..+..+|.++++|+...+.+......
T Consensus 108 i~~~~~~~~~~~~~~--~------~-------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~------- 159 (359)
T cd03808 108 IYTVHGLGFVFTSGG--L------K-------------RRLYLLLERLALRFTDKVIFQNEDDRDLALKLGII------- 159 (359)
T ss_pred EEEecCcchhhccch--h------H-------------HHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCC-------
Confidence 999998642211100 0 0 00011234566778999999999988877652110
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
.+..++.+++||+|.+.+.+.... . ..+.+.|+|+||+.+.||++.+++|
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~---~~~~~~i~~~G~~~~~k~~~~li~~ 209 (359)
T cd03808 160 -KKKKTVLIPGSGVDLDRFSPSPEP--------------------------I---PEDDPVFLFVARLLKDKGIDELLEA 209 (359)
T ss_pred -CcCceEEecCCCCChhhcCccccc--------------------------c---CCCCcEEEEEeccccccCHHHHHHH
Confidence 124678889999998877553110 0 1245789999999999999999999
Q ss_pred HHHhhc--CCcEEEEEecCCccccc------H----------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 833 IYRTLE--LGGQFILLGSSPVPHIQ------V----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 833 iarLle--~nvqLVLVGdGp~~~le------k----------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
+..+.+ .+++|+++|.|+..... . ..+|+.||++++||.+|+||++++|||++|+|
T Consensus 210 ~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~P 289 (359)
T cd03808 210 ARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRP 289 (359)
T ss_pred HHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCC
Confidence 999874 47999999998754211 1 18999999999999999999999999999999
Q ss_pred cccCC
Q 002589 889 VNNNC 893 (904)
Q Consensus 889 V~~~v 893 (904)
|+...
T Consensus 290 vi~s~ 294 (359)
T cd03808 290 VIATD 294 (359)
T ss_pred EEEec
Confidence 95543
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.88 E-value=1.6e-20 Score=196.82 Aligned_cols=287 Identities=22% Similarity=0.245 Sum_probs=184.7
Q ss_pred EEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCC
Q 002589 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593 (904)
Q Consensus 514 ILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~G 593 (904)
||++++.++|. ..||.+.++..++++|.+.||+|+|+++......... .. .. .. ...
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~--~~-----------~~------~~---~~~ 57 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLD--LL-----------KG------RL---VGV 57 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchh--hc-----------cc------cc---ccc
Confidence 67888866553 3699999999999999999999999997644321100 00 00 00 000
Q ss_pred eeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEE
Q 002589 594 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC 673 (904)
Q Consensus 594 V~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV 673 (904)
...... +...... ........+...+..++.....+||+||+|.+............ ..++|++
T Consensus 58 ~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~i 121 (377)
T cd03798 58 ERLPVL--------LPVVPLL---KGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR-----KLGIPLV 121 (377)
T ss_pred cccccC--------cchhhcc---ccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH-----hcCCCEE
Confidence 000000 0000000 00111223344444555422468999999964433221222211 2468999
Q ss_pred EEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccc
Q 002589 674 FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLN 753 (904)
Q Consensus 674 ~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~ 753 (904)
+++|+.......... ......+..+..+|.++++|+..++.+... +
T Consensus 122 ~~~h~~~~~~~~~~~------------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~--------- 167 (377)
T cd03798 122 VTLHGSDVNLLPRKR------------------------LLRALLRRALRRADAVIAVSEALADELKAL-G--------- 167 (377)
T ss_pred EEeecchhcccCchh------------------------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHh-c---------
Confidence 999987532110000 012234667788999999999988877652 1
Q ss_pred cCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHH
Q 002589 754 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 833 (904)
Q Consensus 754 ~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAi 833 (904)
.+..++.++|||+|...|.+.... +. +.++.. .+.+.++|+||+.+.||++.+++|+
T Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~---~~~~~~---~~~~~i~~~g~~~~~k~~~~li~~~ 224 (377)
T cd03798 168 IDPEKVTVIPNGVDTERFSPADRA-----------------EA---RKLGLP---EDKKVILFVGRLVPRKGIDYLIEAL 224 (377)
T ss_pred CCCCceEEcCCCcCcccCCCcchH-----------------HH---HhccCC---CCceEEEEeccCccccCHHHHHHHH
Confidence 245789999999999888764210 00 233333 2557899999999999999999999
Q ss_pred HHhhcC--CcEEEEEecCCccc-cc--------------------H--HHHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 834 YRTLEL--GGQFILLGSSPVPH-IQ--------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 834 arLle~--nvqLVLVGdGp~~~-le--------------------k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
..+.+. +++|+++|.|+... +. . ..+|+.||++++||.+|++|++++|||++|+|
T Consensus 225 ~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~p 304 (377)
T cd03798 225 ARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLP 304 (377)
T ss_pred HHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCC
Confidence 998763 79999999886432 10 0 18999999999999999999999999999999
Q ss_pred cccCCCcc
Q 002589 889 VNNNCEPW 896 (904)
Q Consensus 889 V~~~v~~~ 896 (904)
|+....|.
T Consensus 305 vI~~~~~~ 312 (377)
T cd03798 305 VVATDVGG 312 (377)
T ss_pred EEEecCCC
Confidence 97655443
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.88 E-value=5.9e-21 Score=215.68 Aligned_cols=292 Identities=14% Similarity=0.050 Sum_probs=172.8
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
+|+|++.- .+|.+..+..++++|+++||+|+|+++..+..... . ....
T Consensus 5 ~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~----~----------------------~~~~ 52 (415)
T cd03816 5 RVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE----I----------------------LSNP 52 (415)
T ss_pred EEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH----H----------------------hcCC
Confidence 66777652 35667788999999999999999998764311000 0 0124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHH---HH-HHHHHHHHHHhCCCccEEEEcCCchh--hHHHHHHHhhccCC
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFS---FF-SRAALELLLQAGKQPDIIHCHDWQTA--FVAPLYWDLYVPKG 666 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs---~F-sraaLe~Lrq~g~kPDIIHaHdW~ta--lvapL~~~~ya~~g 666 (904)
|+.++.+....+ .+.+ .. ...++. ++ ...++..+.. ..+|||||+|+.... .+.+.++..
T Consensus 53 ~v~~~~~~~~~~--~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~----- 118 (415)
T cd03816 53 NITIHPLPPPPQ--RLNK---LP---FLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL----- 118 (415)
T ss_pred CEEEEECCCCcc--cccc---ch---HHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH-----
Confidence 666666643110 0100 00 011110 10 1111121222 357999999974431 111222221
Q ss_pred CCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCC
Q 002589 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 746 (904)
Q Consensus 667 L~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~ 746 (904)
+.++|+|+|+|++.+. ... .+..... .+ ..-...+.+.....||+|+++|+.+++.+.. ++
T Consensus 119 ~~~~~~V~~~h~~~~~------~~~-~~~~~~~-----~~----~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~--~~- 179 (415)
T cd03816 119 LRRTKLIIDWHNYGYT------ILA-LKLGENH-----PL----VRLAKWYEKLFGRLADYNLCVTKAMKEDLQQ--FN- 179 (415)
T ss_pred HhCCeEEEEcCCchHH------HHh-cccCCCC-----HH----HHHHHHHHHHHhhcCCEeeecCHHHHHHHHh--hh-
Confidence 2578999999986321 000 0000000 00 0001123455667799999999999888764 22
Q ss_pred CcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHH-------------HcCCCCCCCCCcE
Q 002589 747 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK-------------HLGLSSADARKPL 813 (904)
Q Consensus 747 GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk-------------~LGL~~~d~d~pl 813 (904)
.++.++.+||||. ...|.|..... .+..+.+ ..++.. ++..+
T Consensus 180 -------~~~~ki~vI~Ng~-~~~f~p~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 234 (415)
T cd03816 180 -------NWKIRATVLYDRP-PEQFRPLPLEE---------------KHELFLKLAKTFLTRELRIGAVQLSE--ERPAL 234 (415)
T ss_pred -------ccCCCeeecCCCC-HHHceeCcHHH---------------HHHHHHhccccccccccccccceecC--CCceE
Confidence 3568999999994 45676642110 0111111 112221 23467
Q ss_pred EEEEecccCccCHHHHHHHHHHhhc--------CCcEEEEEecCCccc-ccH-------------------H---HHHHh
Q 002589 814 VGCITRLVPQKGVHLIRHAIYRTLE--------LGGQFILLGSSPVPH-IQV-------------------Y---PILLS 862 (904)
Q Consensus 814 VgfVGRL~~qKGIdlLIeAiarLle--------~nvqLVLVGdGp~~~-lek-------------------e---~LyAa 862 (904)
++++||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ + .+|++
T Consensus 235 i~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~ 314 (415)
T cd03816 235 LVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS 314 (415)
T ss_pred EEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh
Confidence 8899999999999999999998863 269999999998532 111 1 89999
Q ss_pred cCeEEEcCC---CCCChHHHHHHccCCcccccCCC
Q 002589 863 SFSFLRKHI---FNICNLYIKLGQGGDLTVNNNCE 894 (904)
Q Consensus 863 ADVfVlPS~---~EpFGLv~LEAMg~gl~V~~~v~ 894 (904)
||++|+|+. .|+||++++|||++|+||+....
T Consensus 315 aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~ 349 (415)
T cd03816 315 ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF 349 (415)
T ss_pred CCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC
Confidence 999997643 58899999999999999966433
No 59
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.86 E-value=2.9e-20 Score=215.70 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred hcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHH--
Q 002589 724 FSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH-- 801 (904)
Q Consensus 724 ~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~-- 801 (904)
.+| ++++|...++.+.. .++ .++.|+.+||||||++.|.|..+. ....++.
T Consensus 339 ~sd-~v~~s~~v~~~l~~-~lg--------ip~~KI~VIyNGVD~~rf~p~~~~-----------------~~~~r~~~~ 391 (578)
T PRK15490 339 GVD-FMSNNHCVTRHYAD-WLK--------LEAKHFQVVYNGVLPPSTEPSSEV-----------------PHKIWQQFT 391 (578)
T ss_pred cch-hhhccHHHHHHHHH-HhC--------CCHHHEEEEeCCcchhhcCccchh-----------------hHHHHHHhh
Confidence 455 77888887777755 222 467899999999999988774310 0112222
Q ss_pred cCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH--------------------HH
Q 002589 802 LGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--------------------YP 858 (904)
Q Consensus 802 LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek--------------------e~ 858 (904)
.+++. +.++|+++||+.++||+..+++|+..+.+ .+++|+|+|+|+... ++. ..
T Consensus 392 ~~l~~---~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~ 468 (578)
T PRK15490 392 QKTQD---ADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGY 468 (578)
T ss_pred hccCC---CCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHH
Confidence 33432 45799999999999999999999998765 479999999998642 211 18
Q ss_pred HHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 859 ILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 859 LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
+|++||+||+||.+|+||++++|||++|+||+.
T Consensus 469 ~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 469 WLQKMNVFILFSRYEGLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred HHHhCCEEEEcccccCccHHHHHHHHhCCCEEE
Confidence 899999999999999999999999999999953
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.85 E-value=1.4e-20 Score=210.10 Aligned_cols=204 Identities=12% Similarity=0.048 Sum_probs=133.2
Q ss_pred CCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhh
Q 002589 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 718 (904)
Q Consensus 639 ~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~l 718 (904)
.++|+||+|....+. +... ...++|+|++.|+..... + .......+.....+. +.+ ......++
T Consensus 103 ~~~D~v~~~~~~~~~----~~~~----~~~~~p~i~~~~d~~~~~-~-~~~~~~~~~~~~~~~---~~~---~~~~~~~e 166 (397)
T TIGR03087 103 EPVDAIVVFSSAMAQ----YVTP----HVRGVPRIVDFVDVDSDK-W-LQYARTKRWPLRWIY---RRE---GRLLLAYE 166 (397)
T ss_pred CCCCEEEEeccccce----eccc----cccCCCeEeehhhHHHHH-H-HHHHhccCcchhHHH---HHH---HHHHHHHH
Confidence 589999999643322 1110 125789999999864110 0 000000000000000 000 00012356
Q ss_pred hHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHH
Q 002589 719 KGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESI 798 (904)
Q Consensus 719 K~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aL 798 (904)
+..+..+|.|+++|+..++.+... ++ ....++.+||||+|++.|.|....
T Consensus 167 ~~~~~~ad~vi~~S~~~~~~l~~~-~~--------~~~~~v~vipngvd~~~f~~~~~~--------------------- 216 (397)
T TIGR03087 167 RAIAARFDAATFVSRAEAELFRRL-AP--------EAAGRITAFPNGVDADFFSPDRDY--------------------- 216 (397)
T ss_pred HHHHhhCCeEEEcCHHHHHHHHHh-CC--------CCCCCeEEeecccchhhcCCCccc---------------------
Confidence 777889999999999988877642 11 234689999999999988764210
Q ss_pred HHHcCCCCCCCCCcEEEEEecccCccCHHHHH----HHHHHhhc--CCcEEEEEecCCcccccH----------------
Q 002589 799 RKHLGLSSADARKPLVGCITRLVPQKGVHLIR----HAIYRTLE--LGGQFILLGSSPVPHIQV---------------- 856 (904)
Q Consensus 799 Rk~LGL~~~d~d~plVgfVGRL~~qKGIdlLI----eAiarLle--~nvqLVLVGdGp~~~lek---------------- 856 (904)
.-.++ .+.++|+|+||+.+.||++.++ ++++.+.+ .+++|+|+|+|+...++.
T Consensus 217 --~~~~~---~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~ 291 (397)
T TIGR03087 217 --PNPYP---PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSPAVRALAALPGVTVTGSVADV 291 (397)
T ss_pred --cCCCC---CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChHHHHHhccCCCeEEeeecCCH
Confidence 00111 2457899999999999999988 45555543 479999999987543211
Q ss_pred HHHHHhcCeEEEcCC-CCCChHHHHHHccCCcccccCC
Q 002589 857 YPILLSSFSFLRKHI-FNICNLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 857 e~LyAaADVfVlPS~-~EpFGLv~LEAMg~gl~V~~~v 893 (904)
..+|+.||++|+||. .|++|++++|||++|+||+...
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~ 329 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP 329 (397)
T ss_pred HHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC
Confidence 189999999999998 5999999999999999996543
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=99.84 E-value=1.6e-19 Score=200.96 Aligned_cols=277 Identities=15% Similarity=0.027 Sum_probs=164.8
Q ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC
Q 002589 527 VGGLGDVVAGLGKALQKKGH-LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (904)
Q Consensus 527 vGGLg~vV~~LarAL~k~GH-eV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps 605 (904)
-+|.+..+..++..|+++|| +|+|++...+....+ . ....|++++.++. |.
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~----~----------------------~~~~~v~v~r~~~--~~ 65 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA----L----------------------LNHPSIHIHLMVQ--PR 65 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH----H----------------------hcCCcEEEEECCC--cc
Confidence 36778999999999999886 799998643211000 0 0124677776642 11
Q ss_pred cccccCCCCCCCcchhhHHH----HHHHHHHHHHHhCCCccEEEEcCCchhh--HHHHHHHhhccCCCCCCeEEEEecCC
Q 002589 606 KFFWRGQFYGEHDDFRRFSF----FSRAALELLLQAGKQPDIIHCHDWQTAF--VAPLYWDLYVPKGLNSARVCFTCHNF 679 (904)
Q Consensus 606 ~~F~r~~iYg~~dd~~Rfs~----FsraaLe~Lrq~g~kPDIIHaHdW~tal--vapL~~~~ya~~gL~giPiV~TIHnl 679 (904)
.......+. ....+.+ +...++..+.....+|||||+|+..... +++.+... +.++|+|+|+|+.
T Consensus 66 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~ 136 (371)
T PLN02275 66 -LLQRLPRVL---YALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW-----LRRAKFVIDWHNF 136 (371)
T ss_pred -cccccccch---HHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-----HhCCCEEEEcCCc
Confidence 110000000 0000111 1122222222225689999999754311 11112221 2478999999986
Q ss_pred cccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeE
Q 002589 680 EYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKF 759 (904)
Q Consensus 680 ~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki 759 (904)
.+. ....|...... + ..-...+.+...+.||.|+++|+.+++.+.. .++ . ++
T Consensus 137 ~~~-------~~~~~~~~~~~-----~----~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~-~~g--------~---~i 188 (371)
T PLN02275 137 GYT-------LLALSLGRSHP-----L----VRLYRWYERHYGKMADGHLCVTKAMQHELDQ-NWG--------I---RA 188 (371)
T ss_pred cHH-------HHhcccCCCCH-----H----HHHHHHHHHHHHhhCCEEEECCHHHHHHHHH-hcC--------C---Ce
Confidence 311 00011100000 0 0001123566778899999999999888764 222 1 27
Q ss_pred EEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhh--
Q 002589 760 VGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL-- 837 (904)
Q Consensus 760 ~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLl-- 837 (904)
.+||||+ .+.|.|.... .++. .+...+++++||+.++||++.+++|+..+.
T Consensus 189 ~vi~n~~-~~~f~~~~~~------------------------~~~~--~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~ 241 (371)
T PLN02275 189 TVLYDQP-PEFFRPASLE------------------------IRLR--PNRPALVVSSTSWTPDEDFGILLEAAVMYDRR 241 (371)
T ss_pred EEECCCC-HHHcCcCCch------------------------hccc--CCCcEEEEEeCceeccCCHHHHHHHHHHHHhh
Confidence 8999995 4667653210 0011 012357889999999999999999998773
Q ss_pred -----------------cCCcEEEEEecCCccc-ccH-------------------H---HHHHhcCeEEEcC--C-CCC
Q 002589 838 -----------------ELGGQFILLGSSPVPH-IQV-------------------Y---PILLSSFSFLRKH--I-FNI 874 (904)
Q Consensus 838 -----------------e~nvqLVLVGdGp~~~-lek-------------------e---~LyAaADVfVlPS--~-~Ep 874 (904)
..+++|+|+|+|+... +++ + .+|++||+||+|+ . .|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~ 321 (371)
T PLN02275 242 VAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLD 321 (371)
T ss_pred hhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEecccccccc
Confidence 1479999999998642 111 1 8899999999874 2 489
Q ss_pred ChHHHHHHccCCcccccCCCc
Q 002589 875 CNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 875 FGLv~LEAMg~gl~V~~~v~~ 895 (904)
||++++|||++|+||+....|
T Consensus 322 ~p~~llEAmA~G~PVVa~~~g 342 (371)
T PLN02275 322 LPMKVVDMFGCGLPVCAVSYS 342 (371)
T ss_pred ccHHHHHHHHCCCCEEEecCC
Confidence 999999999999999654333
No 62
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.84 E-value=1.3e-19 Score=205.38 Aligned_cols=299 Identities=17% Similarity=0.068 Sum_probs=173.1
Q ss_pred cCCCcCCC-cHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEE
Q 002589 521 MAPVAKVG-GLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVY 597 (904)
Q Consensus 521 ~~P~akvG-GLg~vV~~LarAL~k~--GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~ 597 (904)
+.|....| |.++++.+.+.+|++. ||+|+|+|..+...... .+.. +...|.- ....++.++
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~---~l~~----~~~~f~~---------~~~~~~~~~ 69 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEE---ILEK----VESRFNI---------ELDRPRIVF 69 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHH---HHHH----HHHhcCe---------ecCCCceEE
Confidence 45666666 9999999999999998 89999999876542211 0100 0111111 112445543
Q ss_pred EeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHh-CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEe
Q 002589 598 FIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTC 676 (904)
Q Consensus 598 fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~-g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TI 676 (904)
++... ..++. ...|+.-. ....++.. +...++.. +..||||-+|...+..+ |+. .. +.+.|+|+-+
T Consensus 70 ~~~~~--~~~~~-~~~~~r~~--~~~~~~~~-~~~~~~~~~~~~pDv~i~~~g~~~~~-~~~-~~-----~~~~~~i~y~ 136 (419)
T cd03806 70 FLLKY--RKLVE-ASTYPRFT--LLGQALGS-MILGLEALLKLVPDIFIDTMGYPFTY-PLV-RL-----LGGCPVGAYV 136 (419)
T ss_pred EEecc--eeeec-cccCCcee--eHHHHHHH-HHHHHHHHHhcCCCEEEEcCCcccHH-HHH-HH-----hcCCeEEEEe
Confidence 33100 00111 12222100 11112222 22222222 45899988886332222 222 22 2468999999
Q ss_pred cCCcccCCCChhhhh--hcCCc---cc-ccCCcc--cccccccccch-hhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCC
Q 002589 677 HNFEYQGTAPAKELA--SCGLD---VQ-QLNRPD--RMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQG 747 (904)
Q Consensus 677 Hnl~~qG~~p~~~L~--~~GL~---~~-~l~~~d--rLqd~~~~~~i-n~lK~ai~~AD~VItVS~syaeeI~~~~~g~G 747 (904)
|-.. .+.+.+. ..|-. .. .+..-. .+-...++..+ .+++..+..||.++++|+..++.+.. .++
T Consensus 137 h~P~----~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~-~~~-- 209 (419)
T cd03806 137 HYPT----ISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS-LWK-- 209 (419)
T ss_pred cCCc----chHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH-HhC--
Confidence 9321 1111111 11100 00 000000 00000011111 24567788999999999988887765 221
Q ss_pred cccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHH
Q 002589 748 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 827 (904)
Q Consensus 748 L~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGId 827 (904)
...++.+||||+|++.|.+... .. ..+.++|+|+||+.++||++
T Consensus 210 -------~~~~~~vi~~gvd~~~~~~~~~--------------------------~~---~~~~~~il~vgr~~~~K~~~ 253 (419)
T cd03806 210 -------RNTKPSIVYPPCDVEELLKLPL--------------------------DE---KTRENQILSIAQFRPEKNHP 253 (419)
T ss_pred -------cCCCcEEEcCCCCHHHhccccc--------------------------cc---ccCCcEEEEEEeecCCCCHH
Confidence 1247899999999987754310 00 12447899999999999999
Q ss_pred HHHHHHHHhhcC-------CcEEEEEecCCccc-------ccH----------------------HHHHHhcCeEEEcCC
Q 002589 828 LIRHAIYRTLEL-------GGQFILLGSSPVPH-------IQV----------------------YPILLSSFSFLRKHI 871 (904)
Q Consensus 828 lLIeAiarLle~-------nvqLVLVGdGp~~~-------lek----------------------e~LyAaADVfVlPS~ 871 (904)
++++|++.+.+. +++++|+|+|+... +++ ..+|+.||++|+||.
T Consensus 254 ~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~ 333 (419)
T cd03806 254 LQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW 333 (419)
T ss_pred HHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc
Confidence 999999998752 58999999874321 111 089999999999999
Q ss_pred CCCChHHHHHHccCCccccc
Q 002589 872 FNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 872 ~EpFGLv~LEAMg~gl~V~~ 891 (904)
.|+||++++|||++|+||+.
T Consensus 334 ~E~Fgi~~lEAMa~G~pvIa 353 (419)
T cd03806 334 NEHFGIGVVEYMAAGLIPLA 353 (419)
T ss_pred cCCcccHHHHHHHcCCcEEE
Confidence 99999999999999997743
No 63
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.81 E-value=2.4e-19 Score=206.09 Aligned_cols=201 Identities=17% Similarity=0.151 Sum_probs=135.2
Q ss_pred CCccEEEEcCCc-hhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCccccccccccc-chh
Q 002589 639 KQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD-RIN 716 (904)
Q Consensus 639 ~kPDIIHaHdW~-talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~-~in 716 (904)
.++||||+|+.. .++++.++ .. ..++|+|+|.|+...... ...+......... +.. .+.. ...
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~-~~-----~~~~p~I~t~Hg~~~~e~--~~~~~~~~~~~~~------~~~-~~~~~~~~ 236 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALA-KA-----RRGTPFLLTEHGIYTRER--KIELLQADWEMSY------FRR-LWIRFFES 236 (475)
T ss_pred CCCCEEeccCcchHHHHHHHH-HH-----HhCCCEEEecCCccHHHH--HHHHHhcccchHH------HHH-HHHHHHHH
Confidence 478999999753 33332222 21 257999999998631100 0000000000000 000 0000 112
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
+.+.++..||.|+++|+...+.... .| .++.|+.+||||+|.+.|.|....
T Consensus 237 l~~~~~~~ad~Ii~~s~~~~~~~~~--~g--------~~~~ki~vIpNgid~~~f~~~~~~------------------- 287 (475)
T cd03813 237 LGRLAYQAADRITTLYEGNRERQIE--DG--------ADPEKIRVIPNGIDPERFAPARRA------------------- 287 (475)
T ss_pred HHHHHHHhCCEEEecCHHHHHHHHH--cC--------CCHHHeEEeCCCcCHHHcCCcccc-------------------
Confidence 3466778999999999987665443 22 356799999999999988763210
Q ss_pred HHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCc-ccc----cH-------------
Q 002589 797 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPV-PHI----QV------------- 856 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~-~~l----ek------------- 856 (904)
+. ..+.++|+|+||+.+.||++.+++|+..+.+ .+++|+|+|+|+. +.+ ++
T Consensus 288 ------~~---~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f 358 (475)
T cd03813 288 ------RP---EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKF 358 (475)
T ss_pred ------cc---CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEE
Confidence 11 1255899999999999999999999998875 4899999999853 211 10
Q ss_pred ------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 857 ------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 857 ------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
..+|+.||++|+||..|+||++++|||++|+||+..
T Consensus 359 ~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVat 400 (475)
T cd03813 359 TGFQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVAT 400 (475)
T ss_pred cCCccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEEC
Confidence 189999999999999999999999999999999653
No 64
>PLN02949 transferase, transferring glycosyl groups
Probab=99.78 E-value=5.2e-17 Score=187.26 Aligned_cols=135 Identities=12% Similarity=0.050 Sum_probs=102.2
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
++.+..+||.|+++|+..++.+.. .++ .+.++.+|+||+|++.+.+..
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~-~~~---------~~~~i~vvyp~vd~~~~~~~~---------------------- 261 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEA-LWR---------IPERIKRVYPPCDTSGLQALP---------------------- 261 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHH-HcC---------CCCCeEEEcCCCCHHHcccCC----------------------
Confidence 445567899999999988877764 221 134788999999986553210
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc------CCcEEEEEecCCccc-------ccH--------
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPH-------IQV-------- 856 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle------~nvqLVLVGdGp~~~-------lek-------- 856 (904)
.. ...+.+.++++||+.++||++++|+|++.+.+ .+++|+|+|+|+... +++
T Consensus 262 ------~~-~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~ 334 (463)
T PLN02949 262 ------LE-RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD 334 (463)
T ss_pred ------cc-ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC
Confidence 00 01134789999999999999999999998753 378999999974221 111
Q ss_pred --------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 857 --------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 857 --------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
..+|+.||++|+||.+|+||++++|||++|+||+.
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa 383 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA 383 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE
Confidence 08999999999999999999999999999987744
No 65
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.78 E-value=3.3e-18 Score=186.16 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
.+.++..+|.++++|+..++.+.. .+ ..+..+|+||+|.+.|.+..
T Consensus 147 ~~~~~~~~d~ii~~S~~~~~~~~~-~~-----------~~~~~vi~~~~d~~~~~~~~---------------------- 192 (351)
T cd03804 147 DRRSAARVDYFIANSRFVARRIKK-YY-----------GRDATVIYPPVDTDRFTPAE---------------------- 192 (351)
T ss_pred HHHHhcCCCEEEECCHHHHHHHHH-Hh-----------CCCcEEECCCCCHhhcCcCC----------------------
Confidence 455678899999999999888864 22 13467999999998776531
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCccc-cc--------------H---HHH
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-IQ--------------V---YPI 859 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~~-le--------------k---e~L 859 (904)
...+.++|+||+.+.||++.+++|+..+. ++|+|+|+|+... ++ . ..+
T Consensus 193 -----------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~ 258 (351)
T cd03804 193 -----------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDL 258 (351)
T ss_pred -----------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHH
Confidence 02357899999999999999999999874 8999999987532 11 1 189
Q ss_pred HHhcCeEEEcCCCCCChHHHHHHccCCcccccCCCcc
Q 002589 860 LLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 860 yAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~~ 896 (904)
|++||++|+||. |+||++++|||++|+||+....|.
T Consensus 259 ~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~ 294 (351)
T cd03804 259 YARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGG 294 (351)
T ss_pred HHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCC
Confidence 999999999999 999999999999999996544443
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.77 E-value=1.2e-17 Score=185.35 Aligned_cols=141 Identities=10% Similarity=0.051 Sum_probs=105.4
Q ss_pred HhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHH
Q 002589 721 AIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK 800 (904)
Q Consensus 721 ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk 800 (904)
.+...+.+|++|+..++.+... |+ +.. .+|+||+|++.|.|..+ ....+++
T Consensus 89 ~m~~~~~vIavS~~t~~~L~~~----G~------~~~--i~I~~GVD~~~f~p~~~-----------------~~~~~r~ 139 (335)
T PHA01633 89 YLLQDVKFIPNSKFSAENLQEV----GL------QVD--LPVFHGINFKIVENAEK-----------------LVPQLKQ 139 (335)
T ss_pred HHhcCCEEEeCCHHHHHHHHHh----CC------CCc--eeeeCCCChhhcCccch-----------------hhHHHHH
Confidence 3444678999999999888752 22 122 35889999999887421 1234566
Q ss_pred HcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEEecCCccc--------c-------cHH--
Q 002589 801 HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSPVPH--------I-------QVY-- 857 (904)
Q Consensus 801 ~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLVGdGp~~~--------l-------eke-- 857 (904)
+++... ++.++|+++||++++||++.+++|+.++.+. +++++++|.+.... + ..+
T Consensus 140 ~~~~~~--~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~~dl 217 (335)
T PHA01633 140 KLDKDF--PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSREYI 217 (335)
T ss_pred HhCcCC--CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCHHHH
Confidence 666542 2557899999999999999999999998753 35888888642110 1 111
Q ss_pred -HHHHhcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 858 -PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 858 -~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
.+|++||+||+||.+||||++++|||++|+||+..
T Consensus 218 ~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 218 FAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred HHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 89999999999999999999999999999999654
No 67
>PHA01630 putative group 1 glycosyl transferase
Probab=99.76 E-value=6.9e-18 Score=186.69 Aligned_cols=175 Identities=11% Similarity=0.087 Sum_probs=124.6
Q ss_pred chhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHH-hhhcCEE
Q 002589 650 QTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGA-IVFSNIV 728 (904)
Q Consensus 650 ~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~a-i~~AD~V 728 (904)
++...++.+|+... ..++|+|+|+|+.+. ... .++... ...+|.|
T Consensus 53 ~~~~~~~~~~~~~~---~~~~~~v~e~~~~~~---l~~----------------------------~~~~~~~~~~ad~i 98 (331)
T PHA01630 53 YTIFNSMLFWKGIP---HVGKNIVFEVADTDA---ISH----------------------------TALYFFRNQPVDEI 98 (331)
T ss_pred hhhhhHHHHHhhcc---ccCCceEEEEEeech---hhH----------------------------HHHHHHhhccCCEE
Confidence 44444566776532 147899999998421 000 112223 3569999
Q ss_pred EEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCC
Q 002589 729 TTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 808 (904)
Q Consensus 729 ItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d 808 (904)
+++|+..++.+... |+. .+.++.+||||||.+.|.|.... .
T Consensus 99 i~~S~~~~~~l~~~----g~~-----~~~~i~vIpNGVd~~~f~~~~~~------------------------------~ 139 (331)
T PHA01630 99 VVPSQWSKNAFYTS----GLK-----IPQPIYVIPHNLNPRMFEYKPKE------------------------------K 139 (331)
T ss_pred EECCHHHHHHHHHc----CCC-----CCCCEEEECCCCCHHHcCCCccc------------------------------c
Confidence 99999998887642 110 14689999999999888663100 0
Q ss_pred CCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc----cc--------H--HHHHHhcCeEEEcCCC
Q 002589 809 ARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH----IQ--------V--YPILLSSFSFLRKHIF 872 (904)
Q Consensus 809 ~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~----le--------k--e~LyAaADVfVlPS~~ 872 (904)
.+..+++++||+.++||++.|++|++.+.+ .+++++++|+|+... +. . ..+|++||+||+||++
T Consensus 140 ~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~~ 219 (331)
T PHA01630 140 PHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRG 219 (331)
T ss_pred CCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCcc
Confidence 123567788899999999999999999875 378999999875331 10 1 1899999999999999
Q ss_pred CCChHHHHHHccCCccccc-CCCccc
Q 002589 873 NICNLYIKLGQGGDLTVNN-NCEPWL 897 (904)
Q Consensus 873 EpFGLv~LEAMg~gl~V~~-~v~~~l 897 (904)
|+||++++|||++|+||+. ++.|+-
T Consensus 220 E~fgl~~lEAMA~G~PVIas~~gg~~ 245 (331)
T PHA01630 220 GAFEIPVIEALALGLDVVVTEKGAWS 245 (331)
T ss_pred ccCChHHHHHHHcCCCEEEeCCCCch
Confidence 9999999999999999954 455543
No 68
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.76 E-value=1.3e-17 Score=193.06 Aligned_cols=284 Identities=21% Similarity=0.267 Sum_probs=141.5
Q ss_pred EcCccCCCcCCCcHHHHHHHHHHHHHH-CCCeEEEEeeCCCCCcccccccccccceeeeccc-CCccccceeeeee--eC
Q 002589 517 IAAEMAPVAKVGGLGDVVAGLGKALQK-KGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYF-DGRLFKNKVWVST--IE 592 (904)
Q Consensus 517 It~E~~P~akvGGLg~vV~~LarAL~k-~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~f-dG~~~~~~V~~g~--v~ 592 (904)
+++|..- ++||+-+|+..=|+.+++ .|.++.+|.|.........++.+..-+..+.... .-...+.+|..|+ ++
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~ 79 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIP 79 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESST
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeEC
Confidence 3455555 799999999999999885 8899999999765321111111110000000000 0001134555555 57
Q ss_pred CeeEE-EeCCCCCCccccc--------------CCC--CCCCcchhhHHHHHHHHHHHHHHh-C-CCccEEEEcCCchhh
Q 002589 593 GLPVY-FIEPHHPDKFFWR--------------GQF--YGEHDDFRRFSFFSRAALELLLQA-G-KQPDIIHCHDWQTAF 653 (904)
Q Consensus 593 GV~V~-fIdp~~Ps~~F~r--------------~~i--Yg~~dd~~Rfs~FsraaLe~Lrq~-g-~kPDIIHaHdW~tal 653 (904)
|.|.+ +++.. .+++. +.+ |+..++...|.|....+++.+... . ...=|.|+|.|++|+
T Consensus 80 G~P~vIL~D~~---s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~ 156 (633)
T PF05693_consen 80 GRPIVILFDFG---SFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGV 156 (633)
T ss_dssp T--EEEEEEGG---GGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTT
T ss_pred CcCeEEEEeCc---hHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhH
Confidence 87744 55531 12211 011 111233333443333333333322 2 345688999999988
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCccc-ccCC--cccc-cccccccchhhhhHHhhhcCEEE
Q 002589 654 VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQ-QLNR--PDRM-QDNSAHDRINPLKGAIVFSNIVT 729 (904)
Q Consensus 654 vapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~-~l~~--~drL-qd~~~~~~in~lK~ai~~AD~VI 729 (904)
. .++++.. ...+.+|||.|.+-.. +.+..-|.+.. .+.. .+.+ .....+.+..+++.++.+||.++
T Consensus 157 g-ll~lr~~----~~~VaTvFTTHAT~lG-----R~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~AdvFT 226 (633)
T PF05693_consen 157 G-LLYLRKR----KPDVATVFTTHATLLG-----RYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADVFT 226 (633)
T ss_dssp H-HHHHHHT----T-SCEEEEEESS-HHH-----HHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSEEE
T ss_pred H-HHHHhcc----CCCeeEEEEecccchh-----hHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCeee
Confidence 4 5566543 2578999999987311 11111111110 0000 0000 01124556778899999999999
Q ss_pred EcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH----HHHHHc-C-
Q 002589 730 TVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE----SIRKHL-G- 803 (904)
Q Consensus 730 tVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~----aLRk~L-G- 803 (904)
|||+..+.+... .++ . ..=.|+|||++.+.|.... .+-. -+..+|+ .++.+| |
T Consensus 227 TVSeITa~Ea~~-LL~--------r--~pDvV~pNGl~v~~~~~~~-efqn---------l~~~~k~ki~~fv~~~f~g~ 285 (633)
T PF05693_consen 227 TVSEITAKEAEH-LLK--------R--KPDVVTPNGLNVDKFPALH-EFQN---------LHAKAKEKIHEFVRGHFYGH 285 (633)
T ss_dssp ESSHHHHHHHHH-HHS--------S----SEE----B-GGGTSSTT-HHHH---------HHHHHHHHHHHHHHHHSTT-
T ss_pred ehhhhHHHHHHH-HhC--------C--CCCEEcCCCccccccccch-HHHH---------HHHHHHHHHHHHHHHHhccc
Confidence 999999998764 221 2 2225889999998764321 1110 0112232 234443 3
Q ss_pred CCCCC-CCCcEEEEEeccc-CccCHHHHHHHHHHhh
Q 002589 804 LSSAD-ARKPLVGCITRLV-PQKGVHLIRHAIYRTL 837 (904)
Q Consensus 804 L~~~d-~d~plVgfVGRL~-~qKGIdlLIeAiarLl 837 (904)
+.. + ++...|...||.. ..||+|.+|+|+++|.
T Consensus 286 ~df-d~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn 320 (633)
T PF05693_consen 286 YDF-DLDKTLYFFTSGRYEFRNKGIDVFIEALARLN 320 (633)
T ss_dssp --S--GGGEEEEEEESSS-TTTTTHHHHHHHHHHHH
T ss_pred CCC-CccceEEEEeeeceeeecCCccHHHHHHHHHH
Confidence 111 1 2445678899998 5999999999999985
No 69
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.75 E-value=1.7e-17 Score=192.89 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=128.1
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~ 717 (904)
..++||+|++-...... + ++.. ...+|+++++|+..+........ ... +...+.+
T Consensus 209 ~~~~di~i~dr~~~~~~-~-~~~~-----~~~~~~v~~lH~~h~~~~~~~~~-------~~~-----------~~~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQ-A-VLEN-----KGPAKLGVVVHAEHFSESATNET-------YIL-----------WNNYYEY 263 (500)
T ss_pred CCCCCEEEEcCCcccch-H-HHhc-----CCCceEEEEEChhhhcCccCcch-------hHH-----------HHHHHHH
Confidence 45899999986443221 2 2222 24799999999864322110000 000 0000001
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
....+..+|.+|++|+..++.+.......+ ....++.+||||++...+.|..
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~l~~~~~~~~------~~~~ki~viP~g~~~~~~~~~~---------------------- 315 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQILKNQFKKYY------NIEPRIYTIPVGSLDELQYPEQ---------------------- 315 (500)
T ss_pred HHhchhhCCEEEECCHHHHHHHHHHhhhhc------CCCCcEEEEcCCCcccccCccc----------------------
Confidence 112345689999999988887764211111 1246899999998755433210
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH------------------
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------ 856 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------ 856 (904)
......|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++
T Consensus 316 ----------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~ 385 (500)
T TIGR02918 316 ----------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRN 385 (500)
T ss_pred ----------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCC
Confidence 0123579999999999999999999999875 489999999998642 211
Q ss_pred -HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 857 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 857 -e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
..+|+.||+||+||.+|+||+|++|||++|+||+.
T Consensus 386 ~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 386 LSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred HHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEE
Confidence 19999999999999999999999999999999954
No 70
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.74 E-value=1e-16 Score=176.00 Aligned_cols=259 Identities=14% Similarity=-0.000 Sum_probs=159.9
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++++. ..||...+...|+++|.++||+|+|+++...... . .+ ..
T Consensus 2 ~~i~i~~~------g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~---~~-----------------------~~ 48 (357)
T PRK00726 2 KKILLAGG------GTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-R---LV-----------------------PK 48 (357)
T ss_pred cEEEEEcC------cchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-h---cc-----------------------cc
Confidence 89998875 3588888888999999999999999987532100 0 00 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.|++++.++... .. .............+......+.++++ ..+|||||+|.|.+++.+. +... ..++|
T Consensus 49 ~g~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~~ik--~~~pDvv~~~~~~~~~~~~-~~~~-----~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSGG---LR-RKGSLANLKAPFKLLKGVLQARKILK--RFKPDVVVGFGGYVSGPGG-LAAR-----LLGIP 116 (357)
T ss_pred CCCcEEEEeccC---cC-CCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCcchhHHH-HHHH-----HcCCC
Confidence 356666554210 00 00000000001111111122233333 3589999999987765433 2222 25789
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|++.|+.. +. . ..+.....+|.++++++... ..
T Consensus 117 ~v~~~~~~~-----~~-~---------------------------~~r~~~~~~d~ii~~~~~~~---~~---------- 150 (357)
T PRK00726 117 LVIHEQNAV-----PG-L---------------------------ANKLLARFAKKVATAFPGAF---PE---------- 150 (357)
T ss_pred EEEEcCCCC-----cc-H---------------------------HHHHHHHHhchheECchhhh---hc----------
Confidence 998877531 00 0 01223456899998887321 11
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHH-
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR- 830 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLI- 830 (904)
.+..++++||||+|.+.|.+.. .+++++++. +.++|+++|+....|++..++
T Consensus 151 --~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~~---~~~~i~~~gg~~~~~~~~~~l~ 203 (357)
T PRK00726 151 --FFKPKAVVTGNPVREEILALAA----------------------PPARLAGRE---GKPTLLVVGGSQGARVLNEAVP 203 (357)
T ss_pred --cCCCCEEEECCCCChHhhcccc----------------------hhhhccCCC---CCeEEEEECCcHhHHHHHHHHH
Confidence 1357899999999987664321 112455542 457889999999988875555
Q ss_pred HHHHHhhcCCcEEEEEecCCccccc---------------H--HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 831 HAIYRTLELGGQFILLGSSPVPHIQ---------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 831 eAiarLle~nvqLVLVGdGp~~~le---------------k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
+|+..+.+....++++|+|+...+. . ..+|++||++|++|- +.+.+|||++|+||+..
T Consensus 204 ~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~ 278 (357)
T PRK00726 204 EALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILV 278 (357)
T ss_pred HHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEe
Confidence 9998876433457788998643211 1 199999999999873 68999999999999753
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.74 E-value=3.2e-17 Score=188.65 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=144.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|.-+++...+.+...-...|+||+||+|..+++. ++... ..+.|+++.+|-. +|...+..+ ++.
T Consensus 111 w~~Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp~-~lr~~----~~~~~i~~f~Hip-----fP~~e~~~~-lp~-- 177 (460)
T cd03788 111 WEAYVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLPQ-MLRER----GPDARIGFFLHIP-----FPSSEIFRC-LPW-- 177 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHHH-HHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CCC--
Confidence 3444444455555554433467999999999888754 44321 2468999999964 232222111 111
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCccc----cc--ccCCCeEEEEecCccCCCCC
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----TL--NFHSKKFVGILNGIDTDAWN 772 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~----~L--~~~~~Ki~VIPNGID~d~F~ 772 (904)
...+-.++..||.|.+-+..|++.....-- -.|+.. .+ .-...++.+||||||++.|.
T Consensus 178 ---------------~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~ 242 (460)
T cd03788 178 ---------------REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFR 242 (460)
T ss_pred ---------------hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHH
Confidence 011223555688888888777666543100 001110 00 11235789999999999886
Q ss_pred CCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEE
Q 002589 773 PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 846 (904)
Q Consensus 773 P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLV 846 (904)
+... ....+..+++..+.. ++.++|+++||+.+.||++.+++|+..+++. +++|+++
T Consensus 243 ~~~~--------------~~~~~~~~~~~~~~~---~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~v 305 (460)
T cd03788 243 KLAA--------------SPEVQERAAELRERL---GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQI 305 (460)
T ss_pred HHhc--------------CchhHHHHHHHHHhc---CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEE
Confidence 5321 011123333444443 2568999999999999999999999988753 2678888
Q ss_pred ecCC-----cc-cc------------------------------cHH---HHHHhcCeEEEcCCCCCChHHHHHHccCCc
Q 002589 847 GSSP-----VP-HI------------------------------QVY---PILLSSFSFLRKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 847 GdGp-----~~-~l------------------------------eke---~LyAaADVfVlPS~~EpFGLv~LEAMg~gl 887 (904)
|.+. .. .+ ..+ .+|++||+||+||..|+||+|++|||++|+
T Consensus 306 g~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~ 385 (460)
T cd03788 306 AVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQD 385 (460)
T ss_pred ccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEec
Confidence 6432 11 00 011 899999999999999999999999999999
Q ss_pred c-----cccCCCc
Q 002589 888 T-----VNNNCEP 895 (904)
Q Consensus 888 ~-----V~~~v~~ 895 (904)
| |...+.|
T Consensus 386 p~~g~vV~S~~~G 398 (460)
T cd03788 386 DDPGVLILSEFAG 398 (460)
T ss_pred CCCceEEEecccc
Confidence 8 4554444
No 72
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.71 E-value=6.8e-16 Score=167.74 Aligned_cols=257 Identities=14% Similarity=0.044 Sum_probs=156.5
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
+|++.+. ..||-..++..|+++|.++||+|+|+++...... . .. ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~------~~--------------------~~~ 47 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R------LV--------------------PKA 47 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h------cc--------------------ccc
Confidence 3565554 3688888888999999999999999987643110 0 00 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeE
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPi 672 (904)
|++++.++.. .+.+...+.....+..+......+..+++ ..+|||||+|.+..++.+ .++.. ..++|+
T Consensus 48 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~~-~~~a~-----~~~~p~ 115 (350)
T cd03785 48 GIPLHTIPVG----GLRRKGSLKKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGPV-GLAAK-----LLGIPL 115 (350)
T ss_pred CCceEEEEec----CcCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchHH-HHHHH-----HhCCCE
Confidence 4555555421 01010011000000111111122334444 358999999987655432 22221 247898
Q ss_pred EEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccccc
Q 002589 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTL 752 (904)
Q Consensus 673 V~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L 752 (904)
|++.|+.. + .. ..+....++|.|+++|+...+.
T Consensus 116 v~~~~~~~-----~-~~---------------------------~~~~~~~~~~~vi~~s~~~~~~-------------- 148 (350)
T cd03785 116 VIHEQNAV-----P-GL---------------------------ANRLLARFADRVALSFPETAKY-------------- 148 (350)
T ss_pred EEEcCCCC-----c-cH---------------------------HHHHHHHhhCEEEEcchhhhhc--------------
Confidence 87666431 0 00 0122345689999999865543
Q ss_pred ccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHH-HHHH
Q 002589 753 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRH 831 (904)
Q Consensus 753 ~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGId-lLIe 831 (904)
.++.++.+|+||+|.+.|.+.. . ++.++++. +.++|+++|+....|+.. ++++
T Consensus 149 -~~~~~~~~i~n~v~~~~~~~~~---------------------~-~~~~~~~~---~~~~i~~~~g~~~~~~~~~~l~~ 202 (350)
T cd03785 149 -FPKDKAVVTGNPVREEILALDR---------------------E-RARLGLRP---GKPTLLVFGGSQGARAINEAVPE 202 (350)
T ss_pred -CCCCcEEEECCCCchHHhhhhh---------------------h-HHhcCCCC---CCeEEEEECCcHhHHHHHHHHHH
Confidence 1246899999999987664420 1 55677763 567888888887788775 4568
Q ss_pred HHHHhhcCCcEE-EEEecCCcccccH------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 832 AIYRTLELGGQF-ILLGSSPVPHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 832 AiarLle~nvqL-VLVGdGp~~~lek------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
|+..+.+.++++ +++|+|....+++ ..+|+.||++|.+|- |.+.+|||++|+||+.
T Consensus 203 a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~ 277 (350)
T cd03785 203 ALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAIL 277 (350)
T ss_pred HHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEE
Confidence 888876556664 4678874322111 189999999999873 6899999999999964
No 73
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.70 E-value=6.2e-16 Score=167.92 Aligned_cols=255 Identities=16% Similarity=0.077 Sum_probs=149.4
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++++.+ +||--.....|+++|.++||+|+|+++.++... .+ . ..
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-----~~--------------------~--~~ 47 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-----RL--------------------V--PK 47 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-----cc--------------------c--cc
Confidence 688877653 344334446999999999999999986432100 00 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCe
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giP 671 (904)
.|++++.++.. . +.+..+.........+......+.++++ ..+|||||+|.+..++.+.+. .. +.++|
T Consensus 48 ~g~~~~~i~~~---~-~~~~~~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~~~-~~-----~~~~p 115 (348)
T TIGR01133 48 AGIEFYFIPVG---G-LRRKGSFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAGLA-AK-----LLGIP 115 (348)
T ss_pred CCCceEEEecc---C-cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHHHH-HH-----HcCCC
Confidence 35566555421 0 1011110000000111111122334444 368999999987665432222 21 24678
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccc
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHST 751 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~ 751 (904)
+|++.|+.. + .. ..+....++|.++++|+...+.+
T Consensus 116 ~v~~~~~~~-----~-~~---------------------------~~~~~~~~~d~ii~~~~~~~~~~------------ 150 (348)
T TIGR01133 116 LFHHEQNAV-----P-GL---------------------------TNKLLSRFAKKVLISFPGAKDHF------------ 150 (348)
T ss_pred EEEECCCCC-----c-cH---------------------------HHHHHHHHhCeeEECchhHhhcC------------
Confidence 875544321 0 00 01234457999999998654321
Q ss_pred cccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHH-HHH
Q 002589 752 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIR 830 (904)
Q Consensus 752 L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGId-lLI 830 (904)
+..+|+||+|...+.+.. .++.+|++. +.++|+++||....|++. +++
T Consensus 151 ------~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~~---~~~~i~~~gg~~~~~~~~~~l~ 199 (348)
T TIGR01133 151 ------EAVLVGNPVRQEIRSLPV----------------------PRERFGLRE---GKPTILVLGGSQGAKILNELVP 199 (348)
T ss_pred ------CceEEcCCcCHHHhcccc----------------------hhhhcCCCC---CCeEEEEECCchhHHHHHHHHH
Confidence 236999999976554321 023467763 567899999988899865 456
Q ss_pred HHHHHhhcCCcEEEE-EecCCcccccH------------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 831 HAIYRTLELGGQFIL-LGSSPVPHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 831 eAiarLle~nvqLVL-VGdGp~~~lek------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
+|+..+.+.++++++ +|+|+...+++ ..+|++||++|.+| + |.+.+|||++|+|++.
T Consensus 200 ~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~ 275 (348)
T TIGR01133 200 KALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAIL 275 (348)
T ss_pred HHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEE
Confidence 898888665677654 45543221111 18999999999986 2 6899999999999864
No 74
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.69 E-value=5.9e-16 Score=174.80 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=103.9
Q ss_pred hhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHH
Q 002589 718 LKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKES 797 (904)
Q Consensus 718 lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~a 797 (904)
.+..+..+|.|+++|+..++.+... ++ ....++.++|||++...+.+..
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~~-~~--------~~~~ki~vi~~gv~~~~~~~~~---------------------- 225 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQKR-YP--------AYKEKIKVSYLGVSDPGIISKP---------------------- 225 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHH-CC--------CccccEEEEECCcccccccCCC----------------------
Confidence 3455678999999999988887652 32 3457899999999987554310
Q ss_pred HHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC----CcEEEEEecCCccc-cc-----------------
Q 002589 798 IRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL----GGQFILLGSSPVPH-IQ----------------- 855 (904)
Q Consensus 798 LRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~----nvqLVLVGdGp~~~-le----------------- 855 (904)
...+.+.|+++||+.+.||++.+++|+..+.+. ++.++++|+|+... ++
T Consensus 226 ---------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~ 296 (407)
T cd04946 226 ---------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGE 296 (407)
T ss_pred ---------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecC
Confidence 012457899999999999999999999998753 56788899987532 11
Q ss_pred --H-H--HHHHh--cCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 856 --V-Y--PILLS--SFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 856 --k-e--~LyAa--ADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
. + .+|+. +|+|++||.+|+||++++|||++|+||+.
T Consensus 297 v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa 339 (407)
T cd04946 297 LSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA 339 (407)
T ss_pred CChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe
Confidence 0 1 66754 78999999999999999999999999953
No 75
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.68 E-value=5.5e-16 Score=169.85 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=128.4
Q ss_pred CCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhh
Q 002589 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 718 (904)
Q Consensus 639 ~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~l 718 (904)
.++|||++|....... ++ ... ....+.|+++|+..+...... . . .. +.......
T Consensus 98 ~~~diii~~~~~~~~~-~~-~~~-----~~~~~~i~~~h~~~~~~~~~~--~-~--~~--------------~~~~~~~~ 151 (372)
T cd04949 98 TKPDVFILDRPTLDGQ-AL-LNM-----KKAAKVVVVLHSNHVSDNNDP--V-H--SL--------------INNFYEYV 151 (372)
T ss_pred CCCCEEEECCccccch-hH-Hhc-----cCCceEEEEEChHHhCCcccc--c-c--cc--------------cchhhHHH
Confidence 6899999997554432 12 221 135678999997642211000 0 0 00 00001111
Q ss_pred hHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHH
Q 002589 719 KGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESI 798 (904)
Q Consensus 719 K~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aL 798 (904)
...+..+|.++++|+..++.+... ++ ...++.+||||++...+.|..
T Consensus 152 ~~~~~~~d~ii~~s~~~~~~l~~~-~~---------~~~~v~~ip~g~~~~~~~~~~----------------------- 198 (372)
T cd04949 152 FENLDKVDGVIVATEQQKQDLQKQ-FG---------NYNPIYTIPVGSIDPLKLPAQ----------------------- 198 (372)
T ss_pred HhChhhCCEEEEccHHHHHHHHHH-hC---------CCCceEEEcccccChhhcccc-----------------------
Confidence 223467899999999888887652 21 123489999999987665421
Q ss_pred HHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc-ccH-------------------
Q 002589 799 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------- 856 (904)
Q Consensus 799 Rk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~-lek------------------- 856 (904)
.. ....+.|+++||+.+.||++.+++|+..+.+ .+++|+|+|.|+... +..
T Consensus 199 ----~~---~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 271 (372)
T cd04949 199 ----FK---QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRD 271 (372)
T ss_pred ----hh---hcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 00 0134689999999999999999999999875 479999999987542 110
Q ss_pred -HHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 857 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 857 -e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
..+|+.||++|+||.+|+||++++|||++|+||+.
T Consensus 272 ~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~ 307 (372)
T cd04949 272 LDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVIS 307 (372)
T ss_pred HHHHHhhhhEEEecccccccChHHHHHHhCCCCEEE
Confidence 18999999999999999999999999999999974
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.67 E-value=7.8e-16 Score=177.28 Aligned_cols=231 Identities=16% Similarity=0.118 Sum_probs=147.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|.-.++...+.+...-..-|+|.+||+|-.++|. +++.. ....++.|.+|-. ||...+..+ ++.
T Consensus 107 w~~Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~p~-~lr~~----~~~~~igfFlHip-----fP~~e~f~~-lp~-- 173 (456)
T TIGR02400 107 WEAYRRVNRLFAEALAPLLQPGDIVWVHDYHLMLLPA-MLREL----GVQNKIGFFLHIP-----FPSSEIYRT-LPW-- 173 (456)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEecchhhHHHH-HHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CCc--
Confidence 3444444444444444433345999999999988854 44432 2467899999954 333322111 111
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCccc-----ccccCCCeEEEEecCccCCCCCC
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS-----TLNFHSKKFVGILNGIDTDAWNP 773 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~-----~L~~~~~Ki~VIPNGID~d~F~P 773 (904)
..-+-.++..||.|.+-++.|++.....-. -.|+.. ...-...++.++|||||++.|.|
T Consensus 174 ---------------r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~ 238 (456)
T TIGR02400 174 ---------------RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAE 238 (456)
T ss_pred ---------------HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHH
Confidence 111344677899999999998887654210 001110 01124567999999999998865
Q ss_pred CccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEEe
Q 002589 774 ATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLG 847 (904)
Q Consensus 774 ~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLVG 847 (904)
.... .. .......+|++++ ++++|++|||+++.||++.+++|++++++. ++.|+++|
T Consensus 239 ~~~~----------~~-~~~~~~~lr~~~~------~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~ 301 (456)
T TIGR02400 239 QAKK----------PS-VQKRIAELRESLK------GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIA 301 (456)
T ss_pred HhcC----------hh-HHHHHHHHHHHcC------CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEe
Confidence 3210 00 0011224666663 457999999999999999999999998752 35677775
Q ss_pred c-----CCccc-c------------------------------cHH---HHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 848 S-----SPVPH-I------------------------------QVY---PILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 848 d-----Gp~~~-l------------------------------eke---~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
. ++... + ..+ .+|++||+||+||.+|+||+|++|||++|+|
T Consensus 302 ~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P 381 (456)
T TIGR02400 302 VPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDP 381 (456)
T ss_pred cCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCC
Confidence 2 22110 0 011 8999999999999999999999999999999
Q ss_pred -----cccCCCc
Q 002589 889 -----VNNNCEP 895 (904)
Q Consensus 889 -----V~~~v~~ 895 (904)
|...++|
T Consensus 382 ~~g~vVlS~~~G 393 (456)
T TIGR02400 382 KDGVLILSEFAG 393 (456)
T ss_pred CCceEEEeCCCC
Confidence 4555455
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.61 E-value=3.5e-14 Score=141.09 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=70.1
Q ss_pred EEecccCccCHHHHHHHHHHhhcC--CcEEEEEecCCcccc-c--------------------HH---HHHHhcCeEEEc
Q 002589 816 CITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVPHI-Q--------------------VY---PILLSSFSFLRK 869 (904)
Q Consensus 816 fVGRL~~qKGIdlLIeAiarLle~--nvqLVLVGdGp~~~l-e--------------------ke---~LyAaADVfVlP 869 (904)
|+||+.+.||++.+++|+..+.+. +++++++|.++.... . .+ .++++||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 999999999999999999998764 899999998764421 0 01 666679999999
Q ss_pred CCCCCChHHHHHHccCCcccccCCCcccc
Q 002589 870 HIFNICNLYIKLGQGGDLTVNNNCEPWLH 898 (904)
Q Consensus 870 S~~EpFGLv~LEAMg~gl~V~~~v~~~l~ 898 (904)
|..|+||.+++|||++|+||+....|+..
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 99999999999999999999777766654
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.59 E-value=1.1e-13 Score=156.27 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=102.9
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
+.+..+..+|.|+++|+..++.+.. . | .++. +.+++|+ +.+.+.+.. ....+.
T Consensus 171 ~~r~~~~~~d~ii~~S~~~~~~l~~--~--g------~~~~-i~vi~n~-~~d~~~~~~---------------~~~~~~ 223 (425)
T PRK05749 171 FYRLLFKNIDLVLAQSEEDAERFLA--L--G------AKNE-VTVTGNL-KFDIEVPPE---------------LAARAA 223 (425)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH--c--C------CCCC-cEecccc-cccCCCChh---------------hHHHHH
Confidence 3455677899999999999888764 2 2 2345 7888884 333332210 011234
Q ss_pred HHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCcc--ccc-----------------
Q 002589 797 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQ----------------- 855 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~--~le----------------- 855 (904)
.+++.+| + +.++++++|+. .|+.+.+++|+..+.+ .+++|+|+|+|+.+ .++
T Consensus 224 ~~r~~~~-~----~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~ 296 (425)
T PRK05749 224 TLRRQLA-P----NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGE 296 (425)
T ss_pred HHHHHhc-C----CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCC
Confidence 5677776 4 45788888864 6889999999998865 58999999998753 110
Q ss_pred --------------HH--HHHHhcCeEEE-cCCCCCChHHHHHHccCCcccccC
Q 002589 856 --------------VY--PILLSSFSFLR-KHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 856 --------------ke--~LyAaADVfVl-PS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
.+ .+|+.||++++ ||..|++|.+++|||++|+||+.+
T Consensus 297 ~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 297 PPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred CCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 01 89999999655 678899999999999999999875
No 79
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.57 E-value=2.1e-13 Score=151.60 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=157.7
Q ss_pred CCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeee
Q 002589 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (904)
Q Consensus 509 ~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~ 588 (904)
.+.|||++++..+ .||-...+..|+++|.++||+|.++++.+..... .+..+. ...|..--.+...+|.
T Consensus 2 ~~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~----~~~~~~--~~~y~~~~~~~~~~~~ 70 (380)
T PRK13609 2 IKNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHP----VITEIT--KYLYLKSYTIGKELYR 70 (380)
T ss_pred CCCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcch----HHHHHH--HHHHHHHHHHhHHHHH
Confidence 3568999999854 4599999999999999999998888887643211 011100 0000000000000010
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhh-HHHH-HHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCC
Q 002589 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSFF-SRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKG 666 (904)
Q Consensus 589 g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~R-fs~F-sraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~g 666 (904)
....+ .. ..++. ...+ +..+ .+.+.++++. .+||+||+|.+...+ +.+... .
T Consensus 71 ~~~~~-----~~-----------~~~~~--~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~--~~~~~~---~- 124 (380)
T PRK13609 71 LFYYG-----VE-----------KIYDK--KIFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIAV--PELKKQ---T- 124 (380)
T ss_pred HHHhc-----cC-----------cccch--HHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHHH--HHHHHh---c-
Confidence 00000 00 01110 0011 1111 2444455553 589999998654332 223222 1
Q ss_pred CCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCC
Q 002589 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQ 746 (904)
Q Consensus 667 L~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~ 746 (904)
..++|++.+++++... ..+ ....+|.++++|+..++.+.. .
T Consensus 125 ~~~ip~~~~~td~~~~--------------~~~---------------------~~~~ad~i~~~s~~~~~~l~~--~-- 165 (380)
T PRK13609 125 GISIPTYNVLTDFCLH--------------KIW---------------------VHREVDRYFVATDHVKKVLVD--I-- 165 (380)
T ss_pred CCCCCeEEEeCCCCCC--------------ccc---------------------ccCCCCEEEECCHHHHHHHHH--c--
Confidence 2468988666553210 001 123589999999998887764 1
Q ss_pred CcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCc-EEEEEecccCccC
Q 002589 747 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP-LVGCITRLVPQKG 825 (904)
Q Consensus 747 GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~p-lVgfVGRL~~qKG 825 (904)
| .+++++.+++|.++.. |.+.. .+..+++++|++. +.+ ++++.|++...||
T Consensus 166 g------i~~~ki~v~G~p~~~~-f~~~~------------------~~~~~~~~~~l~~---~~~~il~~~G~~~~~k~ 217 (380)
T PRK13609 166 G------VPPEQVVETGIPIRSS-FELKI------------------NPDIIYNKYQLCP---NKKILLIMAGAHGVLGN 217 (380)
T ss_pred C------CChhHEEEECcccChH-HcCcC------------------CHHHHHHHcCCCC---CCcEEEEEcCCCCCCcC
Confidence 2 3456777765544322 32210 1234678899873 334 4566799999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEEec-CC-cc-cccH------------------HHHHHhcCeEEEcCCCCCChHHHHHHcc
Q 002589 826 VHLIRHAIYRTLELGGQFILLGS-SP-VP-HIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQG 884 (904)
Q Consensus 826 IdlLIeAiarLle~nvqLVLVGd-Gp-~~-~lek------------------e~LyAaADVfVlPS~~EpFGLv~LEAMg 884 (904)
+..+++++... .+++++++|+ ++ .. .+++ ..+|++||++|. ++.|++++|||+
T Consensus 218 ~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a 291 (380)
T PRK13609 218 VKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAA 291 (380)
T ss_pred HHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHH
Confidence 99999988653 4789887743 32 11 1110 189999999885 567999999999
Q ss_pred CCccccc
Q 002589 885 GDLTVNN 891 (904)
Q Consensus 885 ~gl~V~~ 891 (904)
+|+||+.
T Consensus 292 ~g~PvI~ 298 (380)
T PRK13609 292 LGVPVIL 298 (380)
T ss_pred hCCCEEE
Confidence 9999965
No 80
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.53 E-value=2.3e-13 Score=152.41 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=101.9
Q ss_pred hhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHc
Q 002589 723 VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 802 (904)
Q Consensus 723 ~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~L 802 (904)
..+|.++++|+..++.+... | .+++|++++++++|.+.+.+. ..+..+|+++
T Consensus 149 ~~~d~~~~~s~~~~~~l~~~----g------~~~~ki~v~g~~v~~~f~~~~------------------~~~~~~r~~~ 200 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRALKR----G------LEPSQIRVYGLPIRPSFARAV------------------RPKDELRREL 200 (382)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECcccCHhhccCC------------------CCHHHHHHHc
Confidence 35899999999988887652 2 356899999999987644332 1255688999
Q ss_pred CCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhh------cCCcE-EEEEecCCc-c-cccH----------------H
Q 002589 803 GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL------ELGGQ-FILLGSSPV-P-HIQV----------------Y 857 (904)
Q Consensus 803 GL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLl------e~nvq-LVLVGdGp~-~-~lek----------------e 857 (904)
|+++ +.++|+++||....||+..+++++..+. ..+.+ ++++|.++. . .++. .
T Consensus 201 gl~~---~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~ 277 (382)
T PLN02605 201 GMDE---DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNME 277 (382)
T ss_pred CCCC---CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHH
Confidence 9974 6789999999999999999999998754 23565 667787642 1 1111 1
Q ss_pred HHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 858 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 858 ~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
.+|++||++|.+| .|++++|||++|+||+.
T Consensus 278 ~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~ 307 (382)
T PLN02605 278 EWMGACDCIITKA----GPGTIAEALIRGLPIIL 307 (382)
T ss_pred HHHHhCCEEEECC----CcchHHHHHHcCCCEEE
Confidence 9999999999976 48999999999999954
No 81
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.51 E-value=1.6e-13 Score=166.30 Aligned_cols=231 Identities=16% Similarity=0.179 Sum_probs=143.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|.-.++...+.+...-..-|+|-+||+|-.++|. +++.. ....|+-|.+|-. ||...+..+ ++..
T Consensus 113 w~~Y~~vN~~fA~~~~~~~~~~d~vwvhDYhl~l~p~-~lr~~----~~~~~igfFlH~p-----fP~~~~f~~-lp~~- 180 (726)
T PRK14501 113 WESYERVNQRFAEAIAAIARPGDVVWVHDYQLMLLPA-MLRER----LPDARIGFFLHIP-----FPSFEVFRL-LPWR- 180 (726)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCchhhhHHH-HHHhh----CCCCcEEEEeeCC-----CCChHHHhh-CCCh-
Confidence 3344444444444444433345999999999988854 44431 3568899999975 333332211 2211
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCcc---cccc--cCCCeEEEEecCccCCCCCC
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLH---STLN--FHSKKFVGILNGIDTDAWNP 773 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~---~~L~--~~~~Ki~VIPNGID~d~F~P 773 (904)
.-+-.++..||.|-+-+..|++.....-. -.|+. ..+. -...++.++|||||++.|.|
T Consensus 181 ----------------~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~ 244 (726)
T PRK14501 181 ----------------EEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHN 244 (726)
T ss_pred ----------------HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHH
Confidence 11234566788888888777766543200 00110 0111 12346899999999998865
Q ss_pred CccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEEe
Q 002589 774 ATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLG 847 (904)
Q Consensus 774 ~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLVG 847 (904)
.... . .. ......+|+.++ ++++|++|||+.+.||+..+++|+.++++. +++|+++|
T Consensus 245 ~~~~-------~-~~---~~~~~~lr~~~~------~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~ 307 (726)
T PRK14501 245 SAQD-------P-EV---QEEIRRLRQDLR------GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVA 307 (726)
T ss_pred HhcC-------c-hH---HHHHHHHHHHcC------CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEe
Confidence 3210 0 00 011233555432 457999999999999999999999998753 36788887
Q ss_pred cC-----Ccc-ccc------------------------------HH---HHHHhcCeEEEcCCCCCChHHHHHHccC---
Q 002589 848 SS-----PVP-HIQ------------------------------VY---PILLSSFSFLRKHIFNICNLYIKLGQGG--- 885 (904)
Q Consensus 848 dG-----p~~-~le------------------------------ke---~LyAaADVfVlPS~~EpFGLv~LEAMg~--- 885 (904)
.| +.. .++ .+ .+|++||+||+||.+|+||+|++|||++
T Consensus 308 ~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~ 387 (726)
T PRK14501 308 VPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTD 387 (726)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCC
Confidence 32 110 000 01 8999999999999999999999999999
Q ss_pred --CcccccCCCc
Q 002589 886 --DLTVNNNCEP 895 (904)
Q Consensus 886 --gl~V~~~v~~ 895 (904)
|.+|....+|
T Consensus 388 ~~g~~vls~~~G 399 (726)
T PRK14501 388 GDGVLILSEMAG 399 (726)
T ss_pred CCceEEEecccc
Confidence 5577665544
No 82
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.49 E-value=7.7e-13 Score=127.52 Aligned_cols=176 Identities=27% Similarity=0.365 Sum_probs=91.1
Q ss_pred EEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCC
Q 002589 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593 (904)
Q Consensus 514 ILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~G 593 (904)
|+++. .+.| ..||++.++.+|+++|+++||+|+|+++........ .
T Consensus 1 ili~~-~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-------------------------------~ 46 (177)
T PF13439_consen 1 ILITN-IFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-------------------------------E 46 (177)
T ss_dssp -EEEC-C-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-------------------------------T
T ss_pred CEEEE-ecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-------------------------------h
Confidence 34444 4555 379999999999999999999999999875432110 0
Q ss_pred eeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEE
Q 002589 594 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC 673 (904)
Q Consensus 594 V~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV 673 (904)
........ + +.... .......+...+...+++. +|||||+|.+.....+.+ .. .+.|+|
T Consensus 47 ~~~~~~~~--~--~~~~~-------~~~~~~~~~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~--~~------~~~~~v 105 (177)
T PF13439_consen 47 LVKIFVKI--P--YPIRK-------RFLRSFFFMRRLRRLIKKE--KPDIVHIHGPPAFWIALL--AC------RKVPIV 105 (177)
T ss_dssp EEEE---T--T---SSTS-------S--HHHHHHHHHHHHHHHH--T-SEEECCTTHCCCHHHH--HH------HCSCEE
T ss_pred ccceeeee--e--ccccc-------ccchhHHHHHHHHHHHHHc--CCCeEEecccchhHHHHH--hc------cCCCEE
Confidence 00000000 0 00000 1111223334455566653 899999998765443221 11 168999
Q ss_pred EEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccc
Q 002589 674 FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLN 753 (904)
Q Consensus 674 ~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~ 753 (904)
+|+|+..+. .... ...... . ......+++.....+|.+++||+..++++.. .+
T Consensus 106 ~~~H~~~~~----~~~~---~~~~~~------~----~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~--------- 158 (177)
T PF13439_consen 106 YTIHGPYFE----RRFL---KSKLSP------Y----SYLNFRIERKLYKKADRIIAVSESTKDELIK-FG--------- 158 (177)
T ss_dssp EEE-HHH------HHTT---TTSCCC------H----HHHHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT---------
T ss_pred EEeCCCccc----cccc---ccccch------h----hhhhhhhhhhHHhcCCEEEEECHHHHHHHHH-hC---------
Confidence 999986421 0000 000000 0 0001112344467899999999999998876 32
Q ss_pred cCCCeEEEEecCccCCCC
Q 002589 754 FHSKKFVGILNGIDTDAW 771 (904)
Q Consensus 754 ~~~~Ki~VIPNGID~d~F 771 (904)
.++.|+.|||||||++.|
T Consensus 159 ~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 159 IPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp --SS-EEE----B-CCCH
T ss_pred CcccCCEEEECCccHHHc
Confidence 457899999999999977
No 83
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.49 E-value=4.2e-13 Score=163.98 Aligned_cols=223 Identities=16% Similarity=0.222 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCccccc
Q 002589 621 RRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQL 700 (904)
Q Consensus 621 ~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l 700 (904)
..|.-.++...+.+...-..-|+|=+||+|-.++| .+++.. ....++.|.+|.. ||...+..| ++.
T Consensus 128 ~~Y~~vN~~FA~~i~~~~~~~d~vWvhDYhL~llp-~~lR~~----~~~~~igfFlHiP-----FPs~e~fr~-lp~--- 193 (797)
T PLN03063 128 DAYKKANRMFLDVVKENYEEGDVVWCHDYHLMFLP-QYLKEY----NNKMKVGWFLHTP-----FPSSEIYKT-LPS--- 193 (797)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhHH-HHHHHh----CCCCcEEEEecCC-----CCCHHHHhh-CCC---
Confidence 33433444444444433334499999999998884 454432 3678999999975 343332211 111
Q ss_pred CCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCccc----cc-ccCCCeEEEEecCccCCCCCCC
Q 002589 701 NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----TL-NFHSKKFVGILNGIDTDAWNPA 774 (904)
Q Consensus 701 ~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~----~L-~~~~~Ki~VIPNGID~d~F~P~ 774 (904)
+ .-+-.++..||.|-+-+..|++.....-- -.|+.. +. .-...++.+||||||++.|.+.
T Consensus 194 -------------r-~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~ 259 (797)
T PLN03063 194 -------------R-SELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINT 259 (797)
T ss_pred -------------H-HHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHH
Confidence 0 11234566788888888888877653100 001110 10 0123578899999999887653
Q ss_pred ccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC--C----cEEEEEe-
Q 002589 775 TDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G----GQFILLG- 847 (904)
Q Consensus 775 ~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~--n----vqLVLVG- 847 (904)
... . . -......+++.++ ++++|++||||.+.||+..+++|+.++++. + +.|+.++
T Consensus 260 ~~~-------~---~-~~~~~~~lr~~~~------~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~ 322 (797)
T PLN03063 260 CEL-------P---E-VKQHMKELKRFFA------GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAV 322 (797)
T ss_pred hcC-------h---h-HHHHHHHHHHhcC------CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEec
Confidence 110 0 0 0011224555554 357999999999999999999999998752 3 3344333
Q ss_pred ----cCCcc-ccc-------------------------------HH--HHHHhcCeEEEcCCCCCChHHHHHHccCCcc
Q 002589 848 ----SSPVP-HIQ-------------------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLT 888 (904)
Q Consensus 848 ----dGp~~-~le-------------------------------ke--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~ 888 (904)
+|+.. .++ .+ .+|++||+||+||.+|+||+|++|||++|.|
T Consensus 323 psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p 401 (797)
T PLN03063 323 PTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKA 401 (797)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecC
Confidence 22211 010 00 8999999999999999999999999999865
No 84
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.46 E-value=5.9e-13 Score=126.23 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=83.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCCcc
Q 002589 528 GGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKF 607 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~~ 607 (904)
||++.++.+|+++|.++||+|+|++|.++..... ....|++++.++...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999886532110 013466666554211
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCCh
Q 002589 608 FWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPA 687 (904)
Q Consensus 608 F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~ 687 (904)
...... . .+ +...+..++.....+|||||+|+|..++++. +... ..++|+|+|+|+..+....+.
T Consensus 50 --~~~~~~---~-~~---~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~-~~~~-----~~~~p~v~~~h~~~~~~~~~~ 114 (160)
T PF13579_consen 50 --RPWPLR---L-LR---FLRRLRRLLAARRERPDVVHAHSPTAGLVAA-LARR-----RRGIPLVVTVHGTLFRRGSRW 114 (160)
T ss_dssp --SSSGGG---H-CC---HHHHHHHHCHHCT---SEEEEEHHHHHHHHH-HHHH-----HHT--EEEE-SS-T------H
T ss_pred --cchhhh---h-HH---HHHHHHHHHhhhccCCeEEEecccchhHHHH-HHHH-----ccCCcEEEEECCCchhhccch
Confidence 000000 0 11 1222333443235789999999977665533 3221 147999999998542211000
Q ss_pred hhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecC
Q 002589 688 KELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 765 (904)
Q Consensus 688 ~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNG 765 (904)
. .. .. ..+.+..+..||.++++|+..++.+.. .+ .+++|+.|||||
T Consensus 115 --~------~~------------~~--~~~~~~~~~~ad~vi~~S~~~~~~l~~-~g---------~~~~ri~vipnG 160 (160)
T PF13579_consen 115 --K------RR------------LY--RWLERRLLRRADRVIVVSEAMRRYLRR-YG---------VPPDRIHVIPNG 160 (160)
T ss_dssp --H------HH------------HH--HHHHHHHHHH-SEEEESSHHHHHHHHH-H------------GGGEEE----
T ss_pred --h------hH------------HH--HHHHHHHHhcCCEEEECCHHHHHHHHH-hC---------CCCCcEEEeCcC
Confidence 0 00 00 123567888999999999999998876 22 357899999998
No 85
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.45 E-value=1e-11 Score=138.55 Aligned_cols=187 Identities=17% Similarity=0.127 Sum_probs=125.1
Q ss_pred hCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchh
Q 002589 637 AGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN 716 (904)
Q Consensus 637 ~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in 716 (904)
.+....|+.++...+..+ ... +.+.++|+.+|+... . ++ +.+. ....
T Consensus 99 ~~~~~~i~~~~~P~~~~~----~~~-----~~~~~~Vyd~~D~~~-~-~~-------~~~~---------------~~~~ 145 (373)
T cd04950 99 LGFGRPILWYYTPYTLPV----AAL-----LQASLVVYDCVDDLS-A-FP-------GGPP---------------ELLE 145 (373)
T ss_pred cCCCCcEEEEeCccHHHH----Hhh-----cCCCeEEEEcccchh-c-cC-------CCCH---------------HHHH
Confidence 366778888886544332 121 257899999997421 0 00 0000 0113
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
.++..+..||.|+++|+...+.+.. . ..++++||||+|.+.|.+..... ..
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~~~--~-----------~~~i~~i~ngvd~~~f~~~~~~~---------------~~- 196 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAKRR--L-----------NPNVVLVPNGVDYEHFAAARDPP---------------PP- 196 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhh--C-----------CCCEEEcccccCHHHhhcccccC---------------CC-
Confidence 4577888999999999998876643 1 15789999999999887642110 00
Q ss_pred HHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCcc-ccc----------------HH--
Q 002589 797 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP-HIQ----------------VY-- 857 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~-~le----------------ke-- 857 (904)
.+...+ .+.++|+|+|++.+.++++++.+++.. ..+++|+|+|+|+.. ... .+
T Consensus 197 -~~~~~~-----~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~ 268 (373)
T cd04950 197 -PADLAA-----LPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELP 268 (373)
T ss_pred -hhHHhc-----CCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHH
Confidence 011111 245899999999998888876655443 257999999997321 110 01
Q ss_pred HHHHhcCeEEEcCCC-----CCChHHHHHHccCCcccccCC
Q 002589 858 PILLSSFSFLRKHIF-----NICNLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 858 ~LyAaADVfVlPS~~-----EpFGLv~LEAMg~gl~V~~~v 893 (904)
.+|+++|++++|+.. +.+|+..+|||++|+||+...
T Consensus 269 ~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~ 309 (373)
T cd04950 269 AYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP 309 (373)
T ss_pred HHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC
Confidence 899999999999974 367999999999999997543
No 86
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=136.87 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=92.5
Q ss_pred hhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHc
Q 002589 723 VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 802 (904)
Q Consensus 723 ~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~L 802 (904)
.++|.++++|+..++.+... | .++.++.++.|+++.. |.+. ..+..+++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~----g------i~~~ki~v~GiPv~~~-f~~~------------------~~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV----G------IDPSTVKVTGIPIDNK-FETP------------------IDQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHHc----C------CCHHHEEEECeecChH-hccc------------------ccHHHHHHHc
Confidence 35899999999988887641 2 3467888877766643 3221 0134567789
Q ss_pred CCCCCCCCCc-EEEEEecccCccCHHHHHHHHHHhhcCCcEEEEE-ecCCc--ccccH-----------------HHHHH
Q 002589 803 GLSSADARKP-LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILL-GSSPV--PHIQV-----------------YPILL 861 (904)
Q Consensus 803 GL~~~d~d~p-lVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLV-GdGp~--~~lek-----------------e~LyA 861 (904)
|++. +.+ ++++.||+...||++.+++++.... .+++++++ |.++. ..+.+ ..+|+
T Consensus 197 ~l~~---~~~~ilv~~G~lg~~k~~~~li~~~~~~~-~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 197 NLDP---DKQTILMSAGAFGVSKGFDTMITDILAKS-ANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCC---CCCEEEEECCCcccchhHHHHHHHHHhcC-CCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 9873 344 4567999999999999999864321 46888766 54421 11111 18999
Q ss_pred hcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 862 SSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 862 aADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
+||++|. .|.|+|..|||++|+|++.-
T Consensus 273 ~aDl~I~----k~gg~tl~EA~a~G~PvI~~ 299 (391)
T PRK13608 273 SSQLMIT----KPGGITISEGLARCIPMIFL 299 (391)
T ss_pred hhhEEEe----CCchHHHHHHHHhCCCEEEC
Confidence 9999997 46799999999999999553
No 87
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.29 E-value=5.9e-11 Score=131.51 Aligned_cols=184 Identities=12% Similarity=-0.047 Sum_probs=110.9
Q ss_pred HHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccc
Q 002589 631 LELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNS 710 (904)
Q Consensus 631 Le~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~ 710 (904)
.++++ ..+|||||+|++.+... .+..... ..++|++++.|+..+. +
T Consensus 78 ~~~l~--~~kPdivi~~~~~~~~~-~~a~~a~----~~~ip~i~~~~~~~~~--~------------------------- 123 (380)
T PRK00025 78 KRRLL--AEPPDVFIGIDAPDFNL-RLEKKLR----KAGIPTIHYVSPSVWA--W------------------------- 123 (380)
T ss_pred HHHHH--HcCCCEEEEeCCCCCCH-HHHHHHH----HCCCCEEEEeCCchhh--c-------------------------
Confidence 34444 36899999998533221 1121111 2479999876653210 0
Q ss_pred cccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccc
Q 002589 711 AHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQG 790 (904)
Q Consensus 711 ~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~g 790 (904)
...+. +.....+|.++++|+..++.+.. . | .++.++.|.+.... .+.
T Consensus 124 ~~~~~---~~~~~~~d~i~~~~~~~~~~~~~--~--g---------~~~~~~G~p~~~~~-~~~---------------- 170 (380)
T PRK00025 124 RQGRA---FKIAKATDHVLALFPFEAAFYDK--L--G---------VPVTFVGHPLADAI-PLL---------------- 170 (380)
T ss_pred CchHH---HHHHHHHhhheeCCccCHHHHHh--c--C---------CCeEEECcCHHHhc-ccc----------------
Confidence 00011 12355689999999877665543 1 1 12445555443221 100
Q ss_pred hhhhHHHHHHHcCCCCCCCCCcEE-EEEe-cccCc-cCHHHHHHHHHHhhc--CCcEEEEEec-CCccc-cc--------
Q 002589 791 KAENKESIRKHLGLSSADARKPLV-GCIT-RLVPQ-KGVHLIRHAIYRTLE--LGGQFILLGS-SPVPH-IQ-------- 855 (904)
Q Consensus 791 K~~~K~aLRk~LGL~~~d~d~plV-gfVG-RL~~q-KGIdlLIeAiarLle--~nvqLVLVGd-Gp~~~-le-------- 855 (904)
..+..+++.+|++. +.+++ ++.| |.... ++++.+++|+..+.+ .+++++++|. ++... ++
T Consensus 171 --~~~~~~~~~l~~~~---~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 245 (380)
T PRK00025 171 --PDRAAARARLGLDP---DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAG 245 (380)
T ss_pred --cChHHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCC
Confidence 01345678899873 44654 4445 55554 457899999998865 3689999876 43211 10
Q ss_pred ---------HHHHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 856 ---------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 856 ---------ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
-..+|++||++|+|| |.+.+|||++|+||+-
T Consensus 246 ~~v~~~~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~ 285 (380)
T PRK00025 246 LEVTLLDGQKREAMAAADAALAAS-----GTVTLELALLKVPMVV 285 (380)
T ss_pred CCeEEEcccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEE
Confidence 128999999999998 8999999999999864
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.27 E-value=1.1e-10 Score=135.77 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|.-.++...+.+...-..-|+|=+||+|-.++|. +++.. ....++-|.+|-. ||...+..+ +|..
T Consensus 112 w~~Y~~vN~~FA~~i~~~~~~~d~vWVhDYhL~llp~-~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP~r- 179 (487)
T TIGR02398 112 WQVFLKVNRAFAEAACLEAAEGATVWVHDYNLWLVPG-YIRQL----RPDLKIAFFHHTP-----FPSADVFNI-LPWR- 179 (487)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhHHHH-HHHHh----CCCCeEEEEeeCC-----CCChHHHhh-CCch-
Confidence 3444444444444444433345999999999988854 44431 2567899999965 333322211 1111
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCccc------------------------ccc-
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS------------------------TLN- 753 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~------------------------~L~- 753 (904)
.-+-.++..||.|-+-+..|++.....-- -.|+.. .+.
T Consensus 180 ----------------~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~ 243 (487)
T TIGR02398 180 ----------------EQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDT 243 (487)
T ss_pred ----------------HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeE
Confidence 11233566688888888777766543100 001110 000
Q ss_pred -cCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHH
Q 002589 754 -FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 832 (904)
Q Consensus 754 -~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeA 832 (904)
-..-++.++|.|||++.|.+.... .. -......+|+++| ++++|+.|+|+.+.||+...++|
T Consensus 244 ~gr~v~v~~~PiGID~~~f~~~~~~----------~~-~~~~~~~lr~~~~------~~kiIl~VDRLDy~KGI~~kl~A 306 (487)
T TIGR02398 244 GNRVVKLGAHPVGTDPERIRSALAA----------AS-IREMMERIRSELA------GVKLILSAERVDYTKGILEKLNA 306 (487)
T ss_pred CCEEEEEEEEECEecHHHHHHHhcC----------ch-HHHHHHHHHHHcC------CceEEEEecccccccCHHHHHHH
Confidence 112347899999999988543110 00 0112356788887 34799999999999999999999
Q ss_pred HHHhhcC------CcEEEEEecCCcc---c---ccHH---------------------------------HHHHhcCeEE
Q 002589 833 IYRTLEL------GGQFILLGSSPVP---H---IQVY---------------------------------PILLSSFSFL 867 (904)
Q Consensus 833 iarLle~------nvqLVLVGdGp~~---~---leke---------------------------------~LyAaADVfV 867 (904)
+.++++. ++.|+++|.+... . ++.+ .+|+.||+++
T Consensus 307 fe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~l 386 (487)
T TIGR02398 307 YERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMW 386 (487)
T ss_pred HHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEE
Confidence 9998752 4789988875321 1 1110 8999999999
Q ss_pred EcCCCCCChHHHHHHccCCc
Q 002589 868 RKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 868 lPS~~EpFGLv~LEAMg~gl 887 (904)
+||..|||+||..|+|+++.
T Consensus 387 vT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 387 ITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred ECccccccCcchhhHHhhhc
Confidence 99999999999999998754
No 89
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.26 E-value=1e-11 Score=121.93 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=77.7
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhh---cCCcEEEEEecCCccc-c----------------
Q 002589 795 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL---ELGGQFILLGSSPVPH-I---------------- 854 (904)
Q Consensus 795 K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLl---e~nvqLVLVGdGp~~~-l---------------- 854 (904)
|...+...+.+. +.++|+|+||+.+.||++.+++|+..+. ..++.++|+|+++... +
T Consensus 2 ~~~~~~~~~~~~---~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~ 78 (172)
T PF00534_consen 2 KDKLREKLKIPD---KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFL 78 (172)
T ss_dssp HHHHHHHTTT-T---TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEE
T ss_pred hHHHHHHcCCCC---CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccc
Confidence 455666777653 6789999999999999999999999986 3589999999765321 0
Q ss_pred ---c-H--HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCCCccc
Q 002589 855 ---Q-V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWL 897 (904)
Q Consensus 855 ---e-k--e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~~l 897 (904)
. . ..+|+.||++|+||.+|+||++++|||++|+||+....|..
T Consensus 79 ~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~ 127 (172)
T PF00534_consen 79 GYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGN 127 (172)
T ss_dssp ESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHH
T ss_pred ccccccccccccccceeccccccccccccccccccccccceeeccccCC
Confidence 0 0 19999999999999999999999999999999965555544
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.24 E-value=1.2e-10 Score=127.59 Aligned_cols=195 Identities=15% Similarity=0.083 Sum_probs=120.1
Q ss_pred HHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccc
Q 002589 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (904)
Q Consensus 629 aaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd 708 (904)
.+.+.++. .+|||||+|.+....+++..+.. ..++|+|++.|+... +.. +....
T Consensus 79 ~l~~~l~~--~~pDvV~~~g~~~~~~~~~~aa~-----~~~iPvv~~~~g~~s---~~~------~~~~~---------- 132 (363)
T cd03786 79 GLEAVLLE--EKPDLVLVLGDTNETLAAALAAF-----KLGIPVAHVEAGLRS---FDR------GMPDE---------- 132 (363)
T ss_pred HHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH-----HcCCCEEEEeccccc---CCC------CCCch----------
Confidence 33344443 48999999975432222223222 247999877765321 000 00000
Q ss_pred cccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCc-cCCCCCCCccchhhhcccccc
Q 002589 709 NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNAND 787 (904)
Q Consensus 709 ~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGI-D~d~F~P~~d~~L~~~ys~dd 787 (904)
. ........+|.++++|+..++.+.. . | .++.++.+++|++ |...|.+...
T Consensus 133 ------~-~r~~~~~~ad~~~~~s~~~~~~l~~-~---G------~~~~kI~vign~v~d~~~~~~~~~----------- 184 (363)
T cd03786 133 ------E-NRHAIDKLSDLHFAPTEEARRNLLQ-E---G------EPPERIFVVGNTMIDALLRLLELA----------- 184 (363)
T ss_pred ------H-HHHHHHHHhhhccCCCHHHHHHHHH-c---C------CCcccEEEECchHHHHHHHHHHhh-----------
Confidence 0 0011335689999999998888764 1 2 3568899999985 5432221100
Q ss_pred ccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccC---ccCHHHHHHHHHHhhcCCcEEEEEecCCcc-ccc--------
Q 002589 788 LQGKAENKESIRKHLGLSSADARKPLVGCITRLVP---QKGVHLIRHAIYRTLELGGQFILLGSSPVP-HIQ-------- 855 (904)
Q Consensus 788 l~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~---qKGIdlLIeAiarLle~nvqLVLVGdGp~~-~le-------- 855 (904)
.....++.+|++. +..++++.||+.. .||++.+++|+..+.+.++.+++.|+++.. .++
T Consensus 185 ------~~~~~~~~~~~~~---~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~ 255 (363)
T cd03786 185 ------KKELILELLGLLP---KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLG 255 (363)
T ss_pred ------ccchhhhhcccCC---CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhcc
Confidence 0111245677752 3456778999875 799999999999886545777777765521 110
Q ss_pred --H-----------H--HHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 856 --V-----------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 856 --k-----------e--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
. + .+|++||++|.||- | ++.|||++|+||+.
T Consensus 256 ~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~ 301 (363)
T cd03786 256 HHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLN 301 (363)
T ss_pred CCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEe
Confidence 0 1 78999999999994 5 47999999999854
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.13 E-value=6.5e-10 Score=123.26 Aligned_cols=193 Identities=13% Similarity=0.009 Sum_probs=117.9
Q ss_pred HHHHHHHhCCCccEEEEcC-CchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccc
Q 002589 630 ALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (904)
Q Consensus 630 aLe~Lrq~g~kPDIIHaHd-W~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd 708 (904)
+.++++ ..+||+||+|. +.+++++.+... ..++|++++-++....+.+. .
T Consensus 78 l~~~l~--~~~pDiv~~~gd~~~~la~a~aa~------~~~ipv~h~~~g~~s~~~~~------------------~--- 128 (365)
T TIGR00236 78 LEELLL--EEKPDIVLVQGDTTTTLAGALAAF------YLQIPVGHVEAGLRTGDRYS------------------P--- 128 (365)
T ss_pred HHHHHH--HcCCCEEEEeCCchHHHHHHHHHH------HhCCCEEEEeCCCCcCCCCC------------------C---
Confidence 334444 35899999994 665554333322 25799876544331100000 0
Q ss_pred cccccchhhhhHHh-hhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCc-cCCCCCCCccchhhhccccc
Q 002589 709 NSAHDRINPLKGAI-VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNAN 786 (904)
Q Consensus 709 ~~~~~~in~lK~ai-~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGI-D~d~F~P~~d~~L~~~ys~d 786 (904)
+... ..+..+ ..||.++++|+..++.+.. . | .++.++++++||+ |...+.+.
T Consensus 129 --~~~~--~~r~~~~~~ad~~~~~s~~~~~~l~~-~---G------~~~~~I~vign~~~d~~~~~~~------------ 182 (365)
T TIGR00236 129 --MPEE--INRQLTGHIADLHFAPTEQAKDNLLR-E---N------VKADSIFVTGNTVIDALLTNVE------------ 182 (365)
T ss_pred --CccH--HHHHHHHHHHHhccCCCHHHHHHHHH-c---C------CCcccEEEeCChHHHHHHHHHh------------
Confidence 0000 112222 3589999999999998875 2 2 3568999999996 43222110
Q ss_pred cccchhhhHHHHHHHcCCCCCCCCCcEEEEEe-cc-cCccCHHHHHHHHHHhhc--CCcEEEEEecCCccc---ccH---
Q 002589 787 DLQGKAENKESIRKHLGLSSADARKPLVGCIT-RL-VPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH---IQV--- 856 (904)
Q Consensus 787 dl~gK~~~K~aLRk~LGL~~~d~d~plVgfVG-RL-~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~---lek--- 856 (904)
...+..+++.+|.. .+++++.+ |. ...||++.+++|+..+.+ .+++++++|.+.... +.+
T Consensus 183 -----~~~~~~~~~~~~~~-----~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 252 (365)
T TIGR00236 183 -----IAYSSPVLSEFGED-----KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLG 252 (365)
T ss_pred -----hccchhHHHhcCCC-----CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhC
Confidence 00123455666632 24555555 54 346999999999998864 378888886532110 000
Q ss_pred ----------------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccC
Q 002589 857 ----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 892 (904)
Q Consensus 857 ----------------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~ 892 (904)
..+|+.||+++.|| |.+++|||++|+||+..
T Consensus 253 ~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~ 299 (365)
T TIGR00236 253 DSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVL 299 (365)
T ss_pred CCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEEC
Confidence 07889999999998 66789999999999764
No 92
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.08 E-value=3.7e-09 Score=119.54 Aligned_cols=185 Identities=9% Similarity=-0.072 Sum_probs=115.0
Q ss_pred HHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccc
Q 002589 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (904)
Q Consensus 629 aaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd 708 (904)
.+..+++ ..+||+|.++|+.+..+ .+.. .++ ..++|+|+.+. .. +-.|
T Consensus 80 ~~~~~l~--~~kPd~vi~~g~~~~~~--~~a~-aa~--~~gip~v~~i~-P~-~waw----------------------- 127 (385)
T TIGR00215 80 EVVQLAK--QAKPDLLVGIDAPDFNL--TKEL-KKK--DPGIKIIYYIS-PQ-VWAW----------------------- 127 (385)
T ss_pred HHHHHHH--hcCCCEEEEeCCCCccH--HHHH-HHh--hCCCCEEEEeC-Cc-Hhhc-----------------------
Confidence 3344444 36899999999643332 2211 111 35899986552 11 0000
Q ss_pred cccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccc
Q 002589 709 NSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL 788 (904)
Q Consensus 709 ~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl 788 (904)
.. +..+...+++|.|+++++...+.+.. . | .+..++.|++..+.....
T Consensus 128 ---~~--~~~r~l~~~~d~v~~~~~~e~~~~~~--~--g---------~~~~~vGnPv~~~~~~~~-------------- 175 (385)
T TIGR00215 128 ---RK--WRAKKIEKATDFLLAILPFEKAFYQK--K--N---------VPCRFVGHPLLDAIPLYK-------------- 175 (385)
T ss_pred ---Cc--chHHHHHHHHhHhhccCCCcHHHHHh--c--C---------CCEEEECCchhhhccccC--------------
Confidence 00 11244556899999999987665542 1 1 245567777643211000
Q ss_pred cchhhhHHHHHHHcCCCCCCCCCcEEEEE--ecccC-ccCHHHHHHHHHHhhcC--CcEEEEEe-cCCcc-ccc------
Q 002589 789 QGKAENKESIRKHLGLSSADARKPLVGCI--TRLVP-QKGVHLIRHAIYRTLEL--GGQFILLG-SSPVP-HIQ------ 855 (904)
Q Consensus 789 ~gK~~~K~aLRk~LGL~~~d~d~plVgfV--GRL~~-qKGIdlLIeAiarLle~--nvqLVLVG-dGp~~-~le------ 855 (904)
..+...|+.+|++. +.++|++. ||..+ .|++..+++|+..+.+. +++++++| ++... .++
T Consensus 176 ----~~~~~~r~~lgl~~---~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~ 248 (385)
T TIGR00215 176 ----PDRKSAREKLGIDH---NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEY 248 (385)
T ss_pred ----CCHHHHHHHcCCCC---CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHh
Confidence 01345677889873 56777655 38877 89999999999988653 67887654 33211 110
Q ss_pred ------------HHHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 856 ------------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 856 ------------ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
...+|++||++|++| |.+.+|||++|+|+
T Consensus 249 ~~~~~v~~~~~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~ 289 (385)
T TIGR00215 249 GPDLQLHLIDGDARKAMFAADAALLAS-----GTAALEAALIKTPM 289 (385)
T ss_pred CCCCcEEEECchHHHHHHhCCEEeecC-----CHHHHHHHHcCCCE
Confidence 128999999999999 88889999999997
No 93
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.01 E-value=5.7e-09 Score=128.79 Aligned_cols=229 Identities=16% Similarity=0.205 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccC
Q 002589 622 RFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN 701 (904)
Q Consensus 622 Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~ 701 (904)
.|.-.++...+.+...-..=|+|=+||+|-.++| .+++.. ....+|-|.+|-. ||...+..| +++
T Consensus 213 ~Y~~vN~~FA~~i~~~~~~gD~VWVHDYHL~LlP-~~LR~~----~p~~~IGfFlHiP-----FPs~Eifr~-LP~---- 277 (934)
T PLN03064 213 AYKKANQMFADVVNEHYEEGDVVWCHDYHLMFLP-KCLKEY----NSNMKVGWFLHTP-----FPSSEIHRT-LPS---- 277 (934)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEecchhhHHH-HHHHHh----CCCCcEEEEecCC-----CCChHHHhh-CCc----
Confidence 3433444444444433333489999999998884 454432 3578999999975 343332211 111
Q ss_pred CcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCcccc---cccC--CCeEEEEecCccCCCCCCCc
Q 002589 702 RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHST---LNFH--SKKFVGILNGIDTDAWNPAT 775 (904)
Q Consensus 702 ~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~~---L~~~--~~Ki~VIPNGID~d~F~P~~ 775 (904)
+ .-+-.++..||.|-+-+..|++.....-. -.|+... +... .-++.++|-|||++.|....
T Consensus 278 ------------r-~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~ 344 (934)
T PLN03064 278 ------------R-SELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRAL 344 (934)
T ss_pred ------------H-HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHh
Confidence 0 11234667789999999888887653100 0012110 1111 12466789999998775421
Q ss_pred cchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC--C--cEEEEE-----
Q 002589 776 DTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G--GQFILL----- 846 (904)
Q Consensus 776 d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~--n--vqLVLV----- 846 (904)
. ..++ ......++++++ ++++|+.|+||.+.||+...+.||.++++. . .+++++
T Consensus 345 ~--------~~~v---~~~~~~lr~~~~------g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~p 407 (934)
T PLN03064 345 E--------TPQV---QQHIKELKERFA------GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVP 407 (934)
T ss_pred c--------ChhH---HHHHHHHHHHhC------CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCC
Confidence 0 0000 011345677765 346999999999999999999999998752 2 235555
Q ss_pred --ecCCcc-cccHH---------------------------------HHHHhcCeEEEcCCCCCChHHHHHHccC-----
Q 002589 847 --GSSPVP-HIQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGG----- 885 (904)
Q Consensus 847 --GdGp~~-~leke---------------------------------~LyAaADVfVlPS~~EpFGLv~LEAMg~----- 885 (904)
|+++.. .++.+ .+|+.||+||+||..|+|+||.+|+|++
T Consensus 408 sr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~ 487 (934)
T PLN03064 408 TRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKK 487 (934)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCC
Confidence 333321 11110 9999999999999999999999999988
Q ss_pred CcccccCCCc
Q 002589 886 DLTVNNNCEP 895 (904)
Q Consensus 886 gl~V~~~v~~ 895 (904)
|..|....+|
T Consensus 488 GvLILSEfaG 497 (934)
T PLN03064 488 GVLILSEFAG 497 (934)
T ss_pred CCeEEeCCCc
Confidence 4555433333
No 94
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=1.9e-08 Score=103.00 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=98.8
Q ss_pred hcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcC
Q 002589 724 FSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG 803 (904)
Q Consensus 724 ~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LG 803 (904)
.++.+++.+......+.. .+ ...++.++|||++.+.+.+. ..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~--------------------------~~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA-LG----------VPNKIVVIPNGIDTEKFAPA--------------------------RIG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH-hC----------CCCCceEecCCcCHHHcCcc--------------------------ccC
Confidence 478889998876444433 11 12378899999999877542 111
Q ss_pred CCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC--CcEEEEEecCCcc--cc-------------------c-HH--
Q 002589 804 LSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVP--HI-------------------Q-VY-- 857 (904)
Q Consensus 804 L~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~--nvqLVLVGdGp~~--~l-------------------e-ke-- 857 (904)
+.. +.....++++||+.+.||++.+++|+..+... ++.++++|.|+.. .+ . ..
T Consensus 193 ~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 193 LLP-EGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CCc-ccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 111 11126899999999999999999999998764 2799999998752 00 0 01
Q ss_pred HHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCCCc
Q 002589 858 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 858 ~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
.+++.||++++||.+|+||++++|||++|+||+....|
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~ 309 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG 309 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCC
Confidence 78888999999999999999999999999998665544
No 95
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.89 E-value=1.6e-08 Score=117.00 Aligned_cols=314 Identities=16% Similarity=0.127 Sum_probs=170.1
Q ss_pred CCCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHH---------CCCeEEEEeeCCCCCccccc-----ccccc-cce
Q 002589 507 SISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK---------KGHLVEIVLPKYDCMQYDRI-----DDLRA-LDV 571 (904)
Q Consensus 507 ~~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k---------~GHeV~VItP~y~~l~~~~v-----~~L~~-l~i 571 (904)
...+.++++++.++. ..||...-+-+-+.+++. .||+|.+++..+..+..+.+ ..+.. ..+
T Consensus 30 ~~~~~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i 105 (495)
T KOG0853|consen 30 PEKPFEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPI 105 (495)
T ss_pred ccccchhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCce
Confidence 345678898887643 579999999999999999 99999999977654421100 01111 112
Q ss_pred eeecccCCccccceeee--eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCC
Q 002589 572 VVESYFDGRLFKNKVWV--STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW 649 (904)
Q Consensus 572 ~v~s~fdG~~~~~~V~~--g~v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW 649 (904)
.+.+++-..... ..+. ....++.+..++. .+. +.+...++.. ... |..++..++.+.+. ||++|-|.|
T Consensus 106 ~vv~~~lP~~~~-~~~~~~~~~~~~~il~~~~-~~~-~k~~~~~d~~---i~d---~~~~~~~l~~~~~~-p~~~~~i~~ 175 (495)
T KOG0853|consen 106 LVVGDWLPRAMG-QFLEQVAGCAYLRILRIPF-GIL-FKWAEKVDPI---IED---FVSACVPLLKQLSG-PDVIIKIYF 175 (495)
T ss_pred EEEEeecCcccc-hhhhhhhccceeEEEEecc-chh-hhhhhhhcee---ecc---hHHHHHHHHHHhcC-CcccceeEE
Confidence 222211100000 0000 0123444444431 000 0000001110 011 23344444554444 999999999
Q ss_pred chhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEE
Q 002589 650 QTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVT 729 (904)
Q Consensus 650 ~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VI 729 (904)
.+.+...++... .+++-+++-|.++..- . .....+|.++
T Consensus 176 ~~h~~~~lla~r------~g~~~~l~~~~l~~~e------~-----------------------------e~~~~~~~~~ 214 (495)
T KOG0853|consen 176 YCHFPDSLLAKR------LGVLKVLYRHALDKIE------E-----------------------------ETTGLAWKIL 214 (495)
T ss_pred eccchHHHhccc------cCccceeehhhhhhhh------h-----------------------------hhhhccceEe
Confidence 887764444321 3577777777553110 0 0111245666
Q ss_pred EcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCC
Q 002589 730 TVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADA 809 (904)
Q Consensus 730 tVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~ 809 (904)
+.|...+....... .+....++.+.+-+||.+.+.|. .|.+ +.+.+...|...|+..
T Consensus 215 ~ns~~~~~~f~~~~--------~~L~~~d~~~~y~ei~~s~~~~~-------~~~~-----~~~~~~~~r~~~~v~~--- 271 (495)
T KOG0853|consen 215 VNSYFTKRQFKATF--------VSLSNSDITSTYPEIDGSWFTYG-------QYES-----HLELRLPVRLYRGVSG--- 271 (495)
T ss_pred cchhhhhhhhhhhh--------hhcCCCCcceeeccccchhcccc-------cccc-----chhcccccceeeeecc---
Confidence 66655554443311 11223447888889998766541 1111 1111222233445441
Q ss_pred CCcEEEEEecccCccCHHHHHHHHHHhhc-------CCcEEEEEec-CCccc-------ccH------------------
Q 002589 810 RKPLVGCITRLVPQKGVHLIRHAIYRTLE-------LGGQFILLGS-SPVPH-------IQV------------------ 856 (904)
Q Consensus 810 d~plVgfVGRL~~qKGIdlLIeAiarLle-------~nvqLVLVGd-Gp~~~-------lek------------------ 856 (904)
...++.-+-|+.|.||++++++|+..+.. ...+++++|+ |.+.. +++
T Consensus 272 ~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~ 351 (495)
T KOG0853|consen 272 IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFL 351 (495)
T ss_pred cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEe
Confidence 24567888999999999999999988764 2468888884 22211 110
Q ss_pred ------H--HHHHhcCeEEEcCCCCCChHHHHHHccCCcccc------------cCCCcccc
Q 002589 857 ------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN------------NNCEPWLH 898 (904)
Q Consensus 857 ------e--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~------------~~v~~~l~ 898 (904)
+ .+++.+...+.....|+||+|++|||++|+||+ ++++|||+
T Consensus 352 ~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~ 413 (495)
T KOG0853|consen 352 PSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLI 413 (495)
T ss_pred cCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceee
Confidence 0 455555555554445999999999998888764 56677765
No 96
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.75 E-value=4.9e-07 Score=93.36 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=111.5
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
||.+|.+--.|. ..||.++++.+|+..|+++||+|+|.+........ . ....
T Consensus 3 kIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~-----~----------------------~~y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK-----E----------------------FEYN 54 (185)
T ss_pred eEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC-----C----------------------cccC
Confidence 799999988885 68999999999999999999999999865321100 0 0135
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHH---HHHHhCCCccEEEEcCCc-hhhHHHHHHHhhccCCCC
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE---LLLQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLN 668 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe---~Lrq~g~kPDIIHaHdW~-talvapL~~~~ya~~gL~ 668 (904)
|+....++.+ ..+. ...+.+...++.. +.++...++||||++..- .+++.+++ ..+. ..
T Consensus 55 gv~l~~i~~~------~~g~-------~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~-r~~~---~~ 117 (185)
T PF09314_consen 55 GVRLVYIPAP------KNGS-------AESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFL-RKLR---KK 117 (185)
T ss_pred CeEEEEeCCC------CCCc-------hHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHH-Hhhh---hc
Confidence 6666666421 1110 1222222222222 333333468999999876 34443433 2221 14
Q ss_pred CCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCc
Q 002589 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGL 748 (904)
Q Consensus 669 giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL 748 (904)
+.|+++++|+.++.+.-+ |.....+ -+ --++.+.++||.+|+.|+...+.+... ++
T Consensus 118 g~~v~vN~DGlEWkR~KW-------~~~~k~~------------lk-~~E~~avk~ad~lIaDs~~I~~y~~~~-y~--- 173 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKRAKW-------GRPAKKY------------LK-FSEKLAVKYADRLIADSKGIQDYIKER-YG--- 173 (185)
T ss_pred CCcEEECCCcchhhhhhc-------CHHHHHH------------HH-HHHHHHHHhCCEEEEcCHHHHHHHHHH-cC---
Confidence 679999999987543110 1000110 01 124678899999999999999888763 21
Q ss_pred ccccccCCCeEEEEecCcc
Q 002589 749 HSTLNFHSKKFVGILNGID 767 (904)
Q Consensus 749 ~~~L~~~~~Ki~VIPNGID 767 (904)
..+..+||+|-|
T Consensus 174 -------~~~s~~IaYGad 185 (185)
T PF09314_consen 174 -------RKKSTFIAYGAD 185 (185)
T ss_pred -------CCCcEEecCCCC
Confidence 367889999976
No 97
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.67 E-value=5.1e-07 Score=99.92 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=107.2
Q ss_pred CCCc-cEEEEcCCch-hh-HHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccc
Q 002589 638 GKQP-DIIHCHDWQT-AF-VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR 714 (904)
Q Consensus 638 g~kP-DIIHaHdW~t-al-vapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~ 714 (904)
+.+| ||||+|.... ++ ....+..... . .++|+|+++|+..... . ...+ . .
T Consensus 61 ~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k--~-~~~k~i~~ihD~~~~~-~-----~~~~----------------~--~ 113 (333)
T PRK09814 61 SLKPGDIVIFQFPTWNGFEFDRLFVDKLK--K-KQVKIIILIHDIEPLR-F-----DSNY----------------Y--L 113 (333)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHH--H-cCCEEEEEECCcHHHh-c-----cccc----------------h--h
Confidence 3566 9999998532 11 1111222211 1 3799999999974211 0 0000 0 0
Q ss_pred hhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhh
Q 002589 715 INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAEN 794 (904)
Q Consensus 715 in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~ 794 (904)
...++..+..||.++++|+.+++.+... |+ .+.++.+++|..+.....+
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~~----g~------~~~~i~~~~~~~~~~~~~~--------------------- 162 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVEE----GL------TTDKIIVQGIFDYLNDIEL--------------------- 162 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHHc----CC------CcCceEecccccccccccc---------------------
Confidence 2345667788999999999999888652 22 3456766655433211000
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCccc-c----------cHH---HHH
Q 002589 795 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-I----------QVY---PIL 860 (904)
Q Consensus 795 K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~~-l----------eke---~Ly 860 (904)
+. . ....+.|+|+||+....++ .+ ...+++|+|+|+|+... . ..+ .+|
T Consensus 163 ----~~---~---~~~~~~i~yaG~l~k~~~l---~~-----~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l 224 (333)
T PRK09814 163 ----VK---T---PSFQKKINFAGNLEKSPFL---KN-----WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNEL 224 (333)
T ss_pred ----cc---c---ccCCceEEEecChhhchHH---Hh-----cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHH
Confidence 00 0 0134689999999954321 11 12478999999998541 1 111 566
Q ss_pred HhcCeEEEcCCC-----------CCChHHHHHHccCCcccccCCCccccc
Q 002589 861 LSSFSFLRKHIF-----------NICNLYIKLGQGGDLTVNNNCEPWLHH 899 (904)
Q Consensus 861 AaADVfVlPS~~-----------EpFGLv~LEAMg~gl~V~~~v~~~l~~ 899 (904)
+. |+.+++... -.+|.-..++|++|+||+....|.+..
T Consensus 225 ~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~ 273 (333)
T PRK09814 225 SK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIAD 273 (333)
T ss_pred hc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHH
Confidence 66 766664321 245666888999999998777666554
No 98
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.53 E-value=3.5e-06 Score=80.40 Aligned_cols=138 Identities=24% Similarity=0.375 Sum_probs=80.0
Q ss_pred eEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeC
Q 002589 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (904)
Q Consensus 513 kILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~ 592 (904)
|||+++..+ ..++..+++.|.+.||+|+|+++..+.... ....
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~----------------------------~~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKY----------------------------EIIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhh----------------------------hHhC
Confidence 688888642 357889999999999999999985432100 0134
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCch-hhHHHHHHHhhccCCCCCCe
Q 002589 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSAR 671 (904)
Q Consensus 593 GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~t-alvapL~~~~ya~~gL~giP 671 (904)
|+.++.++.. . + ... ..+.+ ..+..+++ ..+|||||+|...+ ++++.++... .+.+|
T Consensus 44 ~i~~~~~~~~-----~-k-~~~------~~~~~--~~l~k~ik--~~~~DvIh~h~~~~~~~~~~l~~~~-----~~~~~ 101 (139)
T PF13477_consen 44 GIKVIRLPSP-----R-K-SPL------NYIKY--FRLRKIIK--KEKPDVIHCHTPSPYGLFAMLAKKL-----LKNKK 101 (139)
T ss_pred CeEEEEecCC-----C-C-ccH------HHHHH--HHHHHHhc--cCCCCEEEEecCChHHHHHHHHHHH-----cCCCC
Confidence 6666655310 0 0 000 01111 12334444 35799999999775 5554333222 13389
Q ss_pred EEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcC
Q 002589 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVS 732 (904)
Q Consensus 672 iV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS 732 (904)
+|+|.|+.++........+ .-.+.+.++..||.+++.|
T Consensus 102 ~i~~~hg~~~~~~~~~~~~-----------------------~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 102 VIYTVHGSDFYNSSKKKKL-----------------------KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred EEEEecCCeeecCCchHHH-----------------------HHHHHHHHHHhCCEEEEcC
Confidence 9999998753111000000 0124567888999999876
No 99
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1.9e-07 Score=105.11 Aligned_cols=168 Identities=21% Similarity=0.219 Sum_probs=94.1
Q ss_pred ccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccc------cccccccc
Q 002589 641 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM------QDNSAHDR 714 (904)
Q Consensus 641 PDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drL------qd~~~~~~ 714 (904)
.-|-|.|.|++|.. ..+.+.. ...+.+|||.|..-. |. .+... ..+.+..++.+ -....+.+
T Consensus 175 ~vVahFHEW~AGVg-L~l~R~r----rl~iaTifTTHATLL-GR----yLCA~--~~DfYNnLd~f~vD~EAGkr~IYHr 242 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVG-LILCRAR----RLDIATIFTTHATLL-GR----YLCAG--NVDFYNNLDSFDVDKEAGKRQIYHR 242 (692)
T ss_pred HHHHHHHHHHhccc-hheehhc----ccceEEEeehhHHHH-HH----HHhcc--cchhhhchhhcccchhhccchhHHH
Confidence 45779999998763 3333321 245778899997521 11 11100 11111111111 00125667
Q ss_pred hhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhh
Q 002589 715 INPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAEN 794 (904)
Q Consensus 715 in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~ 794 (904)
..+++++...|+.++|||+..+-+... +|+. ++=.+.|||++...|..-.. |.--....|..-
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~EAeH---------lLkR--KPD~itPNGLNV~KFsA~HE------FQNLHA~~KekI 305 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALEAEH---------LLKR--KPDVITPNGLNVKKFSAVHE------FQNLHAQKKEKI 305 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHH---------HHhc--CCCeeCCCCcceeehhHHHH------HHHHHHHHHHHH
Confidence 788889999999999999887655432 2222 23357799999988864221 100000112222
Q ss_pred HHHHHHHc-C-CCCCCCCCcEEEEEeccc-CccCHHHHHHHHHHhh
Q 002589 795 KESIRKHL-G-LSSADARKPLVGCITRLV-PQKGVHLIRHAIYRTL 837 (904)
Q Consensus 795 K~aLRk~L-G-L~~~d~d~plVgfVGRL~-~qKGIdlLIeAiarLl 837 (904)
....|.+| | +...=++...+...||.. ..||.|.+|+|+++|.
T Consensus 306 ndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 306 NDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred HHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 23345444 2 221011344567789997 5999999999999975
No 100
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.43 E-value=4e-07 Score=86.15 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=60.9
Q ss_pred CcEEEEEecccCccCHHHHHH-HHHHhhc--CCcEEEEEecCCcc--cc----------cHH--HHHHhcCeEEEcCC-C
Q 002589 811 KPLVGCITRLVPQKGVHLIRH-AIYRTLE--LGGQFILLGSSPVP--HI----------QVY--PILLSSFSFLRKHI-F 872 (904)
Q Consensus 811 ~plVgfVGRL~~qKGIdlLIe-AiarLle--~nvqLVLVGdGp~~--~l----------eke--~LyAaADVfVlPS~-~ 872 (904)
.++|+++|++.+.||++.+++ |+.++.+ .+++|+|+|.++.. .+ ..+ .+|+.||++++|+. .
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 367999999999999999999 9988875 47999999998752 11 011 89999999999996 6
Q ss_pred CCChHHHHHHccCCcccccCCCc
Q 002589 873 NICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 873 EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
++++...+|||++|+||+....|
T Consensus 82 ~~~~~k~~e~~~~G~pvi~~~~~ 104 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIASDNG 104 (135)
T ss_dssp SCC-HHHHHHHCTT--EEEEHHH
T ss_pred CcCcHHHHHHHHhCCCEEECCcc
Confidence 89999999999999999654433
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.38 E-value=5e-05 Score=85.42 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHcCCCCCCCCCcEEEEEecccCccCH-HHHHHHHHHhhcCCcEEEE-EecCCcc-------c-----cc-H--HH
Q 002589 796 ESIRKHLGLSSADARKPLVGCITRLVPQKGV-HLIRHAIYRTLELGGQFIL-LGSSPVP-------H-----IQ-V--YP 858 (904)
Q Consensus 796 ~aLRk~LGL~~~d~d~plVgfVGRL~~qKGI-dlLIeAiarLle~nvqLVL-VGdGp~~-------~-----le-k--e~ 858 (904)
...++.+|++. +.|+|+.+|-=.--+.+ +.+.+++..+.. +++++. .|..... . +- . ..
T Consensus 173 ~~~~~~~~l~~---~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~ 248 (352)
T PRK12446 173 EKGLAFLGFSR---KKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPD 248 (352)
T ss_pred hHHHHhcCCCC---CCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHH
Confidence 34456788763 55776665543323334 333344444432 466655 4653211 0 11 1 28
Q ss_pred HHHhcCeEEEcCCCCCChHHHHHHccCCcccc
Q 002589 859 ILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 859 LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~ 890 (904)
+|+.||++|.-+ =|.|..|++.+|+|.+
T Consensus 249 ~~~~adlvIsr~----G~~t~~E~~~~g~P~I 276 (352)
T PRK12446 249 ILAITDFVISRA----GSNAIFEFLTLQKPML 276 (352)
T ss_pred HHHhCCEEEECC----ChhHHHHHHHcCCCEE
Confidence 999999998863 3778999999998874
No 102
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.35 E-value=1.3e-05 Score=97.76 Aligned_cols=251 Identities=16% Similarity=0.119 Sum_probs=153.1
Q ss_pred CccEEEEcCCchhhHHHHHHHhhcc-CC--------CCCCeEEEEecCCcccC--CCChhhhhhc---------------
Q 002589 640 QPDIIHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQG--TAPAKELASC--------------- 693 (904)
Q Consensus 640 kPDIIHaHdW~talvapL~~~~ya~-~g--------L~giPiV~TIHnl~~qG--~~p~~~L~~~--------------- 693 (904)
++.+||.+|-|++++.|-+.+.... .+ .....+++|.|+.-..+ .||.+.+...
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~ 379 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRF 379 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHH
Confidence 6899999999998876655543221 01 23456899999974222 3444332211
Q ss_pred --------CCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecC
Q 002589 694 --------GLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 765 (904)
Q Consensus 694 --------GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNG 765 (904)
+.+...+.++..+.. .....+++-..++..|..|..||.-+.+-++...+ .++-..-|.|+.-+.||
T Consensus 380 ~~~~~~~~~~~~~~~~~l~ii~~-~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~----~df~~l~P~kf~n~TNG 454 (797)
T cd04300 380 LEEVRAKYPGDEDRIRRMSIIEE-GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVF----KDFYELYPEKFNNKTNG 454 (797)
T ss_pred HHHHHHhcCCCHHHHHhhccccc-CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhH----HHHHhhCCCccCCcCCC
Confidence 111111111111111 11235788888999999999999877665544211 11111346888999999
Q ss_pred ccCCCCCCCccchhhhc---------------------cccc-----c-ccchhhhHHHH----HHHcCCCCCCCCCcEE
Q 002589 766 IDTDAWNPATDTFLKVQ---------------------YNAN-----D-LQGKAENKESI----RKHLGLSSADARKPLV 814 (904)
Q Consensus 766 ID~d~F~P~~d~~L~~~---------------------ys~d-----d-l~gK~~~K~aL----Rk~LGL~~~d~d~plV 814 (904)
|..-+|--...|.+..- |..| . ..-|..+|..| +++.|+. .+++....
T Consensus 455 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~-ldp~slfd 533 (797)
T cd04300 455 ITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVE-VDPDSLFD 533 (797)
T ss_pred CCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCCCccEE
Confidence 99998842111212111 1111 0 12344556554 5577886 47788889
Q ss_pred EEEecccCccCHHH-HHHHHHHhh---cC------CcEEEEEecCCcccc-c-----------H----------------
Q 002589 815 GCITRLVPQKGVHL-IRHAIYRTL---EL------GGQFILLGSSPVPHI-Q-----------V---------------- 856 (904)
Q Consensus 815 gfVGRL~~qKGIdl-LIeAiarLl---e~------nvqLVLVGdGp~~~l-e-----------k---------------- 856 (904)
+++-|+...|...+ +++.+.++. +. ..+||++|.....+. . +
T Consensus 534 vq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVF 613 (797)
T cd04300 534 VQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVF 613 (797)
T ss_pred EEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEE
Confidence 99999999999999 777766543 21 378999997532211 0 0
Q ss_pred ---------HHHHHhcCeEEEcCC--CCCChHHHHHHccCCcccccCCCcc
Q 002589 857 ---------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 857 ---------e~LyAaADVfVlPS~--~EpFGLv~LEAMg~gl~V~~~v~~~ 896 (904)
+.++.+||+...-|. .|++|..-|-+|-=|.+.+.-..||
T Consensus 614 lenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGa 664 (797)
T cd04300 614 LPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 664 (797)
T ss_pred eCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccch
Confidence 199999999999997 7999999999995444443333333
No 103
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=4.6e-06 Score=100.64 Aligned_cols=360 Identities=18% Similarity=0.187 Sum_probs=211.4
Q ss_pred CCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcc--cc-----cc---c----------cc-----ccceeeecc
Q 002589 522 APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQY--DR-----ID---D----------LR-----ALDVVVESY 576 (904)
Q Consensus 522 ~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~--~~-----v~---~----------L~-----~l~i~v~s~ 576 (904)
-|.- .||+|+........++..|...+.++-.|...-- .. ++ . .+ .+++++..
T Consensus 110 ~p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g- 187 (750)
T COG0058 110 DPGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPG- 187 (750)
T ss_pred Cccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEe-
Confidence 3543 4999999999999999999999999877654310 00 00 0 00 11222222
Q ss_pred cCCccccceeeeeeeCCeeEEEeCCCCCCc-cccc---CCCCCCCcchhhH---HHHHHHHHHHHHHhC------CCccE
Q 002589 577 FDGRLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWR---GQFYGEHDDFRRF---SFFSRAALELLLQAG------KQPDI 643 (904)
Q Consensus 577 fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps~-~F~r---~~iYg~~dd~~Rf---s~FsraaLe~Lrq~g------~kPDI 643 (904)
++......++|...+..+++++.+...|+. ...+ ...|+......|+ .+|+.+.+..|...+ .++-+
T Consensus 188 ~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~~~~~~~~~ 267 (750)
T COG0058 188 YDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLEHHDLDVLA 267 (750)
T ss_pred ccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhccccccchh
Confidence 222444577888877777888887654421 1111 1456642133443 456677777776554 67788
Q ss_pred EEEcCCchhhHHHHHHHhhcc-CC--------CCCCeEEEEecCCcccC--CCChhhhhhc-----CCcc---------c
Q 002589 644 IHCHDWQTAFVAPLYWDLYVP-KG--------LNSARVCFTCHNFEYQG--TAPAKELASC-----GLDV---------Q 698 (904)
Q Consensus 644 IHaHdW~talvapL~~~~ya~-~g--------L~giPiV~TIHnl~~qG--~~p~~~L~~~-----GL~~---------~ 698 (904)
-|.+|.|++++.+-+.+.... .+ ....-++||.|+.-..| .||...+... ++.. .
T Consensus 268 ~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~ 347 (750)
T COG0058 268 DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEV 347 (750)
T ss_pred hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHH
Confidence 899999998876655442111 01 13356889999974333 3444332210 0000 0
Q ss_pred ccCCcc-cccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccc
Q 002589 699 QLNRPD-RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDT 777 (904)
Q Consensus 699 ~l~~~d-rLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~ 777 (904)
....+. .........-+++--.|++.|..|..||.-+.+-++...+. ..-...+.||.-+.|||..-+|--..-+
T Consensus 348 ~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~----~~~~~~p~~i~nvTNGIt~rrWl~~~n~ 423 (750)
T COG0058 348 RLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFA----DFHGLYPEKINNVTNGITPRRWLAPANP 423 (750)
T ss_pred HhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHH----HhcccCccccccccCCcCCchhhhhhhH
Confidence 000000 00000011116677778888999999998877665443221 0111237899999999999999432223
Q ss_pred hhhhccccc--------------------c------c-cchhhhHHHH----HHHcCCCCCCCCCcEEEEEecccCccCH
Q 002589 778 FLKVQYNAN--------------------D------L-QGKAENKESI----RKHLGLSSADARKPLVGCITRLVPQKGV 826 (904)
Q Consensus 778 ~L~~~ys~d--------------------d------l-~gK~~~K~aL----Rk~LGL~~~d~d~plVgfVGRL~~qKGI 826 (904)
.+...++.. + + .-|..+|..| ..+.|+. .+++...++++-|++.+|..
T Consensus 424 ~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~-~~p~~lfd~~~kRiheYKRq 502 (750)
T COG0058 424 GLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIE-VDPNALFDGQARRIHEYKRQ 502 (750)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cCCCcceeeeehhhhhhhhh
Confidence 332222211 0 0 0122334333 3446766 46788999999999999999
Q ss_pred HHHHHHHHHhhc-------CCcEEEEEecCCccccc-H------------------------------HHHHHhcCeEEE
Q 002589 827 HLIRHAIYRTLE-------LGGQFILLGSSPVPHIQ-V------------------------------YPILLSSFSFLR 868 (904)
Q Consensus 827 dlLIeAiarLle-------~nvqLVLVGdGp~~~le-k------------------------------e~LyAaADVfVl 868 (904)
++.+.=+.++.. +.++++++|.....++. + +.++.+|||-..
T Consensus 503 ~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweq 582 (750)
T COG0058 503 LLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQ 582 (750)
T ss_pred HHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhccccccccc
Confidence 988765554432 34777888875422211 0 189999999999
Q ss_pred cCC--CCCChHHHHHHccCCcc
Q 002589 869 KHI--FNICNLYIKLGQGGDLT 888 (904)
Q Consensus 869 PS~--~EpFGLv~LEAMg~gl~ 888 (904)
-|. .|++|.+-|-||-=|.+
T Consensus 583 is~a~~EASGTsnMK~alNGal 604 (750)
T COG0058 583 IPTAGKEASGTSNMKAALNGAL 604 (750)
T ss_pred CCCCCccccCcCcchHHhcCCc
Confidence 887 79999999999933333
No 104
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.13 E-value=0.00011 Score=81.57 Aligned_cols=203 Identities=14% Similarity=0.080 Sum_probs=116.4
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchh-
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN- 716 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in- 716 (904)
...|||..-.-..+..+ |++.. +.++|++.-+|-......+ .+.+....... +....++- ++..+.
T Consensus 148 r~~Pdi~IDtMGY~fs~-p~~r~------l~~~~V~aYvHYP~iS~DM-L~~l~qrq~s~--~l~~~Kla---Y~rlFa~ 214 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSY-PIFRR------LRRIPVVAYVHYPTISTDM-LKKLFQRQKSG--ILVWGKLA---YWRLFAL 214 (465)
T ss_pred hCCchheEecCCCcchh-HHHHH------HccCceEEEEecccccHHH-HHHHHhhhhcc--hhhhHHHH---HHHHHHH
Confidence 57899876553332222 44433 4689999999965322111 01111100000 00111121 222222
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
+...+-..||.|++.|......+.. .. ...++++|+-..+++
T Consensus 215 lY~~~G~~ad~vm~NssWT~nHI~q-iW----------~~~~~~iVyPPC~~e--------------------------- 256 (465)
T KOG1387|consen 215 LYQSAGSKADIVMTNSSWTNNHIKQ-IW----------QSNTCSIVYPPCSTE--------------------------- 256 (465)
T ss_pred HHHhccccceEEEecchhhHHHHHH-Hh----------hccceeEEcCCCCHH---------------------------
Confidence 2344556789999999776666653 11 124566654433333
Q ss_pred HHHHHcCCCCCCCCCcEEEEEecccCccCHH-HHHHHHHHhhc------CCcEEEEEecCCcc-c------ccHH-----
Q 002589 797 SIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRHAIYRTLE------LGGQFILLGSSPVP-H------IQVY----- 857 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgfVGRL~~qKGId-lLIeAiarLle------~nvqLVLVGdGp~~-~------leke----- 857 (904)
.+.+.+|-. +.+.+.++++|.+.|+|... +=+.|+..... .+++++++|+-... + ++..
T Consensus 257 ~lks~~~te--~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~ 334 (465)
T KOG1387|consen 257 DLKSKFGTE--GERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELK 334 (465)
T ss_pred HHHHHhccc--CCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcC
Confidence 222333321 33567899999999999998 33445544332 36899999984321 1 1110
Q ss_pred -----------------HHHHhcCeEEEcCCCCCChHHHHHHccCC-cccccCC
Q 002589 858 -----------------PILLSSFSFLRKHIFNICNLYIKLGQGGD-LTVNNNC 893 (904)
Q Consensus 858 -----------------~LyAaADVfVlPS~~EpFGLv~LEAMg~g-l~V~~~v 893 (904)
.++..|-+-|..=..|-||+.++|+||+| +||.++-
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~S 388 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNS 388 (465)
T ss_pred CccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCC
Confidence 88999999999888999999999999887 4554443
No 105
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=98.02 E-value=6.1e-05 Score=91.86 Aligned_cols=246 Identities=15% Similarity=0.114 Sum_probs=147.2
Q ss_pred CccEEEEcCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCcccC--CCChhhhhhc---------CCcccc
Q 002589 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELASC---------GLDVQQ 699 (904)
Q Consensus 640 kPDIIHaHdW~talvapL~~~~ya~~-g--------L~giPiV~TIHnl~~qG--~~p~~~L~~~---------GL~~~~ 699 (904)
.+.+||.+|.|++++.|-+.+..... + ....-++||.|+.-..| .||.+.+... .+....
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~f 381 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRF 381 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 78899999999988766555432210 1 23456899999974333 3444332210 000000
Q ss_pred c----CC-cc---ccccc--ccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCC
Q 002589 700 L----NR-PD---RMQDN--SAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTD 769 (904)
Q Consensus 700 l----~~-~d---rLqd~--~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d 769 (904)
+ .. ++ ++... -..+.+++-..|+..|..|..||.-+.+-+...-+. + +-..-+.++.-|.|||..-
T Consensus 382 l~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~-d---f~~l~p~kf~nvTNGVt~r 457 (798)
T PRK14985 382 KTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFP-E---YHQLWPNKFHNVTNGITPR 457 (798)
T ss_pred HHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhhhh-h---hHhhCCCccCCcCCCcCcc
Confidence 0 00 00 00000 002357777888889999999997765433332110 0 1112368889999999999
Q ss_pred CC----CCCccchhhh-----------------ccccc-c-----ccchhhhHHHH----HHHcCCCCCCCCCcEEEEEe
Q 002589 770 AW----NPATDTFLKV-----------------QYNAN-D-----LQGKAENKESI----RKHLGLSSADARKPLVGCIT 818 (904)
Q Consensus 770 ~F----~P~~d~~L~~-----------------~ys~d-d-----l~gK~~~K~aL----Rk~LGL~~~d~d~plVgfVG 818 (904)
.| +|.-...+.. .|..| + ..-|..+|..| +++.|+. .+++...++++-
T Consensus 458 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~-ldp~slfdvq~k 536 (798)
T PRK14985 458 RWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIE-INPQAIFDVQIK 536 (798)
T ss_pred hhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCchhcchhhHh
Confidence 99 4422212211 12211 1 12244455544 5667876 367778889999
Q ss_pred cccCccCHHH-HHHHHHHhhc---C------CcEEEEEecCCccccc-H-------------------------------
Q 002589 819 RLVPQKGVHL-IRHAIYRTLE---L------GGQFILLGSSPVPHIQ-V------------------------------- 856 (904)
Q Consensus 819 RL~~qKGIdl-LIeAiarLle---~------nvqLVLVGdGp~~~le-k------------------------------- 856 (904)
|+...|..++ +++.+.++.+ . ..+||++|.....+.. +
T Consensus 537 R~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY 616 (798)
T PRK14985 537 RLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDY 616 (798)
T ss_pred hhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCC
Confidence 9999999999 8877766542 1 4789999975322110 0
Q ss_pred -----HHHHHhcCeEEEcCC--CCCChHHHHHHccCCcccc
Q 002589 857 -----YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 857 -----e~LyAaADVfVlPS~--~EpFGLv~LEAMg~gl~V~ 890 (904)
+.++.+||+...-|. .|++|..-|-||-=|.+.+
T Consensus 617 ~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtl 657 (798)
T PRK14985 617 CVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTV 657 (798)
T ss_pred ChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceee
Confidence 199999999999987 7999999999994444433
No 106
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.02 E-value=0.00015 Score=88.83 Aligned_cols=242 Identities=17% Similarity=0.132 Sum_probs=145.8
Q ss_pred CccEEEEcCCchhhHHHHHHHhhccC---------CCCCCeEEEEecCCcccC--CCChhhhhhc-----CC----cccc
Q 002589 640 QPDIIHCHDWQTAFVAPLYWDLYVPK---------GLNSARVCFTCHNFEYQG--TAPAKELASC-----GL----DVQQ 699 (904)
Q Consensus 640 kPDIIHaHdW~talvapL~~~~ya~~---------gL~giPiV~TIHnl~~qG--~~p~~~L~~~-----GL----~~~~ 699 (904)
.+-+||.+|-|++++.+-+.+..... ......++||-|+.-..| .||.+.+... ++ ....
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~f 392 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF 392 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHH
Confidence 45699999999988766555432211 123456899999974333 3444332211 10 0000
Q ss_pred cC--------Cc---ccc---cccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecC
Q 002589 700 LN--------RP---DRM---QDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 765 (904)
Q Consensus 700 l~--------~~---drL---qd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNG 765 (904)
+. .. .++ .+ .....+++-..|+..|..|..||.-+.+-+.+.-+. ++-..-++|+.-|.||
T Consensus 393 l~~~~~~~~~~~~~~~~~sii~~-~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~----df~~l~P~kf~niTNG 467 (815)
T PRK14986 393 LKTLQEQYPNDTDLLGRASIIDE-SNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFA----DFAKIFPGRFCNVTNG 467 (815)
T ss_pred HHHHHHhCCCcHHHHhhhhcccc-CCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHH----HHHhhCCCcccccCCC
Confidence 00 00 011 10 012257888889999999999998766543222110 0011346788889999
Q ss_pred ccCCCCC----CCccchhhhc-----------------cccc-c-----ccchhhhHHHH----HHHcCCCCCCCCCcEE
Q 002589 766 IDTDAWN----PATDTFLKVQ-----------------YNAN-D-----LQGKAENKESI----RKHLGLSSADARKPLV 814 (904)
Q Consensus 766 ID~d~F~----P~~d~~L~~~-----------------ys~d-d-----l~gK~~~K~aL----Rk~LGL~~~d~d~plV 814 (904)
|..-.|- |.-...+... +..+ + ..-|..+|..| +++.|+. .+++...+
T Consensus 468 V~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~-ldp~sLfd 546 (815)
T PRK14986 468 VTPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVV-VNPKALFD 546 (815)
T ss_pred CChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCccccee
Confidence 9999885 3221111111 1101 1 11244455444 5567876 46788889
Q ss_pred EEEecccCccCHHH-HHHHHHHhh---cC------CcEEEEEecCCcccc------------cH----------------
Q 002589 815 GCITRLVPQKGVHL-IRHAIYRTL---EL------GGQFILLGSSPVPHI------------QV---------------- 856 (904)
Q Consensus 815 gfVGRL~~qKGIdl-LIeAiarLl---e~------nvqLVLVGdGp~~~l------------ek---------------- 856 (904)
+++-|+...|..++ +++.+.++. +. ..++|++|.....+. .+
T Consensus 547 ~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVF 626 (815)
T PRK14986 547 VQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVF 626 (815)
T ss_pred eeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEE
Confidence 99999999999999 777766553 22 478999997532210 00
Q ss_pred ---------HHHHHhcCeEEEcCC--CCCChHHHHHHccCCc
Q 002589 857 ---------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDL 887 (904)
Q Consensus 857 ---------e~LyAaADVfVlPS~--~EpFGLv~LEAMg~gl 887 (904)
+.++.+||+...-|. .|++|..-|-||-=|.
T Consensus 627 lenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGa 668 (815)
T PRK14986 627 IPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGA 668 (815)
T ss_pred eCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCc
Confidence 199999999999987 7999999999994443
No 107
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.94 E-value=0.00029 Score=82.43 Aligned_cols=222 Identities=16% Similarity=0.053 Sum_probs=136.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|...++...+.+...-..-|+|=+||+|-.++|. +++.. ....++-|.+|-. ||...+..+ +++.
T Consensus 103 w~~Y~~VN~~FA~~v~~~~~~~D~VWVHDYhL~llp~-~LR~~----~~~~~IgFFlHiP-----FPs~eifr~-LP~r- 170 (474)
T PRK10117 103 WEGYLRVNALLADKLLPLLKDDDIIWIHDYHLLPFAS-ELRKR----GVNNRIGFFLHIP-----FPTPEIFNA-LPPH- 170 (474)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeccHhhHHHH-HHHHh----CCCCcEEEEEeCC-----CCChHHHhh-CCCh-
Confidence 3444444444444444433345999999999988854 44432 2567899999965 333322111 1110
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcC-CCCccc----ccc--cCCCeEEEEecCccCCCCC
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEG-GQGLHS----TLN--FHSKKFVGILNGIDTDAWN 772 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~-g~GL~~----~L~--~~~~Ki~VIPNGID~d~F~ 772 (904)
.-+-.++..||.|-+-++.|++.....-- -.|+.. .+. -..-++.+.|=|||++.|.
T Consensus 171 ----------------~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~ 234 (474)
T PRK10117 171 ----------------DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIA 234 (474)
T ss_pred ----------------HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHH
Confidence 11234566788888888888877543100 001110 110 1123577888899988763
Q ss_pred CCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEE
Q 002589 773 PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 846 (904)
Q Consensus 773 P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLV 846 (904)
.... ... ......+++.++ ++.+|+-|.|+.+-||+..=+.|+.++++. ++.|+-+
T Consensus 235 ~~a~---------~~~---~~~~~~lr~~~~------~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQi 296 (474)
T PRK10117 235 KQAA---------GPL---PPKLAQLKAELK------NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQI 296 (474)
T ss_pred HHhh---------chH---HHHHHHHHHHcC------CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEE
Confidence 2110 000 111345666665 346888999999999999999999998862 4566656
Q ss_pred ecCC---ccccc---HH---------------------------------HHHHhcCeEEEcCCCCCChHHHHHHccCCc
Q 002589 847 GSSP---VPHIQ---VY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGDL 887 (904)
Q Consensus 847 GdGp---~~~le---ke---------------------------------~LyAaADVfVlPS~~EpFGLv~LEAMg~gl 887 (904)
.... .+.|+ .+ .+|+.||++++.|..+++-||..|-.++..
T Consensus 297 a~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~ 376 (474)
T PRK10117 297 APTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQD 376 (474)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeec
Confidence 5422 11121 10 899999999999999999999999987754
No 108
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.90 E-value=0.00031 Score=82.42 Aligned_cols=218 Identities=19% Similarity=0.211 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccC
Q 002589 622 RFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN 701 (904)
Q Consensus 622 Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~ 701 (904)
.|...++...+.+...-..-|+|=+||+|-.++|. +++.. ..+.|+.|.+|.. ||...+..| ++.
T Consensus 123 ~Y~~vN~~FA~~i~~~~~~~D~VWVhDYhL~llP~-~LR~~----~~~~~IgfFlHiP-----FPs~e~fr~-lP~---- 187 (474)
T PF00982_consen 123 AYKRVNRRFADAIAEVYRPGDLVWVHDYHLMLLPQ-MLRER----GPDARIGFFLHIP-----FPSSEIFRC-LPW---- 187 (474)
T ss_dssp HHHHHHHHHHHHHGGG--TT-EEEEESGGGTTHHH-HHHHT----T--SEEEEEE-S---------HHHHTT-STT----
T ss_pred HHHHHHHHHHHHHHHhCcCCCEEEEeCCcHHHHHH-HHHhh----cCCceEeeEEecC-----CCCHHHHhh-CCc----
Confidence 34444455555554443466999999999988854 55431 3578999999975 343332211 111
Q ss_pred CcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhh---cCCCCccc-----cccc--CCCeEEEEecCccCCCC
Q 002589 702 RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS---EGGQGLHS-----TLNF--HSKKFVGILNGIDTDAW 771 (904)
Q Consensus 702 ~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~---~~g~GL~~-----~L~~--~~~Ki~VIPNGID~d~F 771 (904)
+-. +-.++..||.|-+-+..|++..... .+ |+.- .+.. +.-++.+.|=|||++.|
T Consensus 188 ------------r~e-iL~glL~aDlIgFqt~~~~~nFl~~~~r~l--g~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~ 252 (474)
T PF00982_consen 188 ------------REE-ILRGLLGADLIGFQTFEYARNFLSCCKRLL--GLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAF 252 (474)
T ss_dssp ------------HHH-HHHHHTTSSEEEESSHHHHHHHHHHHHHHS---EEEEETTE-EEETTEEEEEEE------HHHH
T ss_pred ------------HHH-HHHHhhcCCEEEEecHHHHHHHHHHHHHHc--CCcccCCCceEEECCEEEEEEEeeccCChHHH
Confidence 111 2346677999999999988876432 11 1110 1111 12346667778887655
Q ss_pred CCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEE
Q 002589 772 NPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFIL 845 (904)
Q Consensus 772 ~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVL 845 (904)
.... ...++. .....+++.++- +.++|+-|.|+.+-||+..=+.|+.++++. .+.|+-
T Consensus 253 ~~~~--------~~~~v~---~~~~~l~~~~~~-----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQ 316 (474)
T PF00982_consen 253 AQLA--------RSPEVQ---ERAEELREKFKG-----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQ 316 (474)
T ss_dssp HHHH--------H-S------HHHHHHHHHTTT------SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEE
T ss_pred Hhhc--------cChHHH---HHHHHHHHhcCC-----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEE
Confidence 3210 000010 123457777751 247899999999999999999999998752 566776
Q ss_pred EecCCcc---ccc---HH---------------------------------HHHHhcCeEEEcCCCCCChHHHHHHccC
Q 002589 846 LGSSPVP---HIQ---VY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGG 885 (904)
Q Consensus 846 VGdGp~~---~le---ke---------------------------------~LyAaADVfVlPS~~EpFGLv~LEAMg~ 885 (904)
++..... .++ .+ .+|+.||+++++|..+++-|+..|..++
T Consensus 317 i~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~ 395 (474)
T PF00982_consen 317 IAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVAC 395 (474)
T ss_dssp E--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHH
T ss_pred EeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEE
Confidence 6652211 111 10 9999999999999999999999998844
No 109
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.90 E-value=0.00011 Score=89.90 Aligned_cols=251 Identities=18% Similarity=0.147 Sum_probs=151.5
Q ss_pred CccEEEEcCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCcccC--CCChhhhhh---------cCCcccc
Q 002589 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELAS---------CGLDVQQ 699 (904)
Q Consensus 640 kPDIIHaHdW~talvapL~~~~ya~~-g--------L~giPiV~TIHnl~~qG--~~p~~~L~~---------~GL~~~~ 699 (904)
.+.+||.+|-|++++.|-+.+..... + ....-++||-|+.-..| .||.+.+.. .++....
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~f 376 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRF 376 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHH
Confidence 78999999999988766555432211 1 23456899999974222 344433221 1221111
Q ss_pred cC-----Cc---------ccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecC
Q 002589 700 LN-----RP---------DRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNG 765 (904)
Q Consensus 700 l~-----~~---------drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNG 765 (904)
+. .| .-+.. -....+++-..|+..|..|..||.-+.+-++..-+. .+-..-|.|+.-+.||
T Consensus 377 l~~~~~~~p~d~~~~~~~sii~~-~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~----df~~l~P~kf~n~TNG 451 (794)
T TIGR02093 377 LAELAAKGPGDEAKIRRMSIIEE-GQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLK----DFYELYPEKFNNKTNG 451 (794)
T ss_pred HHHHHHhCCCcHHHHhheeeeec-CCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHhhCCCccCCcCCC
Confidence 00 00 00010 012257888889999999999998776555432110 0111336888999999
Q ss_pred ccCCCCCCCccchhhh----c-----------------cccc-----c-ccchhhhHHHH----HHHcCCCCCCCCCcEE
Q 002589 766 IDTDAWNPATDTFLKV----Q-----------------YNAN-----D-LQGKAENKESI----RKHLGLSSADARKPLV 814 (904)
Q Consensus 766 ID~d~F~P~~d~~L~~----~-----------------ys~d-----d-l~gK~~~K~aL----Rk~LGL~~~d~d~plV 814 (904)
|..-+|--...|.+.. . |..| . ..-|..+|..| +++.|+. .+++....
T Consensus 452 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~-ldp~slfd 530 (794)
T TIGR02093 452 ITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVE-VDPNSIFD 530 (794)
T ss_pred CCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cCccccch
Confidence 9999884211122211 1 1111 0 12344555554 5577876 36777888
Q ss_pred EEEecccCccCHHH-HHHHHHHhh---cC------CcEEEEEecCCccccc-H---------------------------
Q 002589 815 GCITRLVPQKGVHL-IRHAIYRTL---EL------GGQFILLGSSPVPHIQ-V--------------------------- 856 (904)
Q Consensus 815 gfVGRL~~qKGIdl-LIeAiarLl---e~------nvqLVLVGdGp~~~le-k--------------------------- 856 (904)
+++-|+...|...+ +++.+.++. +. ..+||++|.....+.. +
T Consensus 531 vq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVF 610 (794)
T TIGR02093 531 VQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVF 610 (794)
T ss_pred hhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEE
Confidence 99999999999999 777766543 22 4589999975322110 0
Q ss_pred ---------HHHHHhcCeEEEcCC--CCCChHHHHHHccCCcccccCCCcc
Q 002589 857 ---------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 857 ---------e~LyAaADVfVlPS~--~EpFGLv~LEAMg~gl~V~~~v~~~ 896 (904)
+.++.+||+...-|. .|++|..-|-+|-=|.+.+.--.||
T Consensus 611 lenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGa 661 (794)
T TIGR02093 611 VPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 661 (794)
T ss_pred eCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccch
Confidence 199999999999987 7999999999995444443333333
No 110
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00063 Score=79.63 Aligned_cols=220 Identities=20% Similarity=0.213 Sum_probs=136.6
Q ss_pred hhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 620 ~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
+..|.-+++...+.+...-..=|+|=+||+|-.++ |.+++.. ....+|.|++|-. ||...+..| ++++
T Consensus 127 w~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~-P~mlR~~----~~~~~IgfFlHiP-----fPssEvfr~-lP~r- 194 (486)
T COG0380 127 WDAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLV-PQMLRER----IPDAKIGFFLHIP-----FPSSEVFRC-LPWR- 194 (486)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhh-HHHHHHh----CCCceEEEEEeCC-----CCCHHHHhh-CchH-
Confidence 44454455555555554433449999999999888 4455432 3567999999975 444443322 1110
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhh---cCC-CCccc-ccc---cCCCeEEEEecCccCCCC
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS---EGG-QGLHS-TLN---FHSKKFVGILNGIDTDAW 771 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~---~~g-~GL~~-~L~---~~~~Ki~VIPNGID~d~F 771 (904)
.-.-.++..||.|-+-++.|++..... ..+ .|... ..+ -...++..+|=|||+..|
T Consensus 195 ----------------~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~ 258 (486)
T COG0380 195 ----------------EEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEF 258 (486)
T ss_pred ----------------HHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHH
Confidence 011345667888888888887765321 110 00000 000 122467788889998766
Q ss_pred CCCccchhhhccccccccchhh--hHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEE
Q 002589 772 NPATDTFLKVQYNANDLQGKAE--NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQF 843 (904)
Q Consensus 772 ~P~~d~~L~~~ys~ddl~gK~~--~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqL 843 (904)
.... .++.. .-.++++.++- +..+|+.+-|+.+-||+..=+.|+.++++. .+.+
T Consensus 259 ~~~~-------------~~~~v~~~~~el~~~~~~-----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvl 320 (486)
T COG0380 259 ERAL-------------KSPSVQEKVLELKAELGR-----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVL 320 (486)
T ss_pred HHhh-------------cCCchhhHHHHHHHHhcC-----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEE
Confidence 4321 01111 12345555542 357899999999999999999999999852 4555
Q ss_pred EEEecCCcc---cccH---H---------------------------------HHHHhcCeEEEcCCCCCChHHHHHHcc
Q 002589 844 ILLGSSPVP---HIQV---Y---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQG 884 (904)
Q Consensus 844 VLVGdGp~~---~lek---e---------------------------------~LyAaADVfVlPS~~EpFGLv~LEAMg 884 (904)
+-++..... .++. + .+|..||++++.|..+++-+|..|--+
T Consensus 321 iQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa 400 (486)
T COG0380 321 LQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVA 400 (486)
T ss_pred EEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHH
Confidence 556654322 1211 0 999999999999999999999999774
Q ss_pred C
Q 002589 885 G 885 (904)
Q Consensus 885 ~ 885 (904)
+
T Consensus 401 ~ 401 (486)
T COG0380 401 A 401 (486)
T ss_pred h
Confidence 4
No 111
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.84 E-value=0.00045 Score=80.42 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=110.0
Q ss_pred hHHhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccC-------CCcCCCcHHHHHHHHHHHHHH--------CCC---
Q 002589 485 YMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA-------PVAKVGGLGDVVAGLGKALQK--------KGH--- 546 (904)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIt~E~~-------P~akvGGLg~vV~~LarAL~k--------~GH--- 546 (904)
..++-+..|...+..|++....- .+|+++++.-+ ....+||.-+||.+++|||.. .|-
T Consensus 250 L~dll~aPdp~~LE~Fl~RiPmv----f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~ 325 (550)
T PF00862_consen 250 LSDLLEAPDPSTLEKFLSRIPMV----FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDIT 325 (550)
T ss_dssp HHHHHHS--HHHHHHHHHHS-------SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT----
T ss_pred HHHHHhCCCchHHHHHhhhccee----EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCC
Confidence 34566777777777776654333 58998887521 222589999999999999975 344
Q ss_pred -eEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeeeCCeeEEEeCCCCCC-----cccccCCCCCCCcch
Q 002589 547 -LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-----KFFWRGQFYGEHDDF 620 (904)
Q Consensus 547 -eV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v~GV~V~fIdp~~Ps-----~~F~r~~iYg~~dd~ 620 (904)
.|.|+|.-.+..... ..+-+++.+ .| -++..+..++.. |. +|..+-.+|++ .
T Consensus 326 p~i~i~TRlIpd~~~t------~~~q~le~~-~g-----------t~~a~IlRvPF~-~~~gi~~kwisrf~lWPy---L 383 (550)
T PF00862_consen 326 PKIDIVTRLIPDAKGT------TCNQRLEKV-SG-----------TENARILRVPFG-PEKGILRKWISRFDLWPY---L 383 (550)
T ss_dssp -EEEEEEE--TBTTCG------GGTSSEEEE-TT-----------ESSEEEEEE-ES-ESTEEE-S---GGG-GGG---H
T ss_pred CceeeecccccCCcCC------Ccccccccc-CC-----------CCCcEEEEecCC-CCcchhhhccchhhchhh---H
Confidence 377776543321100 000001111 11 122333333210 00 12222233332 1
Q ss_pred hhHHHHHHHHHHH-HHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccc
Q 002589 621 RRFSFFSRAALEL-LLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (904)
Q Consensus 621 ~Rfs~FsraaLe~-Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~ 699 (904)
. -|+..+... ....+..||+||.|...++++|.++... .++|.++|-|.++- ..+...++.+..
T Consensus 384 e---~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek------~Ky~~s~~~w~e 448 (550)
T PF00862_consen 384 E---EFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK------LGVTQCFIAHSLEK------TKYEDSDLYWKE 448 (550)
T ss_dssp H---HHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH------HT-EEEEE-SS-HH------HHHHTTTTTSHH
T ss_pred H---HHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh------cCCceehhhhcccc------ccccccCCCHHH
Confidence 1 244444433 4445778999999987788887766554 48999999998841 112222222211
Q ss_pred cCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhh---cCCC---------Ccccccc---cCCCeEEEEec
Q 002589 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTS---EGGQ---------GLHSTLN---FHSKKFVGILN 764 (904)
Q Consensus 700 l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~---~~g~---------GL~~~L~---~~~~Ki~VIPN 764 (904)
+. ..+.+..++.....++.+||.|||-+. +++... .+++ ||-.... .-..|+-+||-
T Consensus 449 ~e-----~~Yhfs~qftAd~iamn~adfIItST~---QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~P 520 (550)
T PF00862_consen 449 IE-----EKYHFSCQFTADLIAMNAADFIITSTY---QEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSP 520 (550)
T ss_dssp HH-----HHH-HHHHHHHHHHHHHHSSEEEESSH---HHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE---
T ss_pred HH-----hhccchhhhhHHHHHhhcCCEEEEcch---HhhcCCccccCCccchhhcchHhHHhhhccccccCCcccccCC
Confidence 10 001123345556678999998887664 455432 1111 1211111 23456777777
Q ss_pred CccCCCCCCCc
Q 002589 765 GIDTDAWNPAT 775 (904)
Q Consensus 765 GID~d~F~P~~ 775 (904)
|+|.+.|-|.+
T Consensus 521 Gad~~iyFpyt 531 (550)
T PF00862_consen 521 GADESIYFPYT 531 (550)
T ss_dssp ---TTTS--TT
T ss_pred CCCcceecCCc
Confidence 77777776644
No 112
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.60 E-value=0.00061 Score=82.62 Aligned_cols=247 Identities=21% Similarity=0.210 Sum_probs=128.6
Q ss_pred ccEEEEcCCchhhHHHHHHHhhcc-CCC--------CCCeEEEEecCCcccC--CCChhhhhh-----------------
Q 002589 641 PDIIHCHDWQTAFVAPLYWDLYVP-KGL--------NSARVCFTCHNFEYQG--TAPAKELAS----------------- 692 (904)
Q Consensus 641 PDIIHaHdW~talvapL~~~~ya~-~gL--------~giPiV~TIHnl~~qG--~~p~~~L~~----------------- 692 (904)
+-+||.+|-|++++.+-+.+.+.. .++ ...-++||.|+.-..| .||...+..
T Consensus 215 ~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~ 294 (713)
T PF00343_consen 215 KVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFL 294 (713)
T ss_dssp HEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHH
Confidence 359999999998876655554332 121 2345899999974333 234332211
Q ss_pred ------cCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCc
Q 002589 693 ------CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGI 766 (904)
Q Consensus 693 ------~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGI 766 (904)
.+.+...+.++.-. +.-....+++-..|+..|..|..||.-+.+-++...+ ..+-...+.|+..|.|||
T Consensus 295 ~~~~~~~~~d~~~~~~l~ii-~~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f----~~f~~l~P~kf~nvTNGV 369 (713)
T PF00343_consen 295 DELRRKYPGDEDQIRRLSII-EEGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVF----KDFYELWPEKFGNVTNGV 369 (713)
T ss_dssp HHHHHHSTT-HHHHHHHSSE-ETSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTT----HHHHHHSGGGEEE----B
T ss_pred HHHHHHhcCcchhhhhcccc-cccchhhcchhHHHHHhcccccchHHHHHHHHHHHHh----hhhhhcCCceeeccccCc
Confidence 01110000000000 0112346888888999999999999887665544221 111123467899999999
Q ss_pred cCCCCCCCccchh--------hhcccc------------cc--c-----cchhhhHHH----HHHHcCCCCCCCCCcEEE
Q 002589 767 DTDAWNPATDTFL--------KVQYNA------------ND--L-----QGKAENKES----IRKHLGLSSADARKPLVG 815 (904)
Q Consensus 767 D~d~F~P~~d~~L--------~~~ys~------------dd--l-----~gK~~~K~a----LRk~LGL~~~d~d~plVg 815 (904)
....|-....|.+ ...+.. +| + .-|..+|.. ++++.|+. .+++....+
T Consensus 370 h~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~-ldp~slfdv 448 (713)
T PF00343_consen 370 HPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVE-LDPDSLFDV 448 (713)
T ss_dssp -TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS----TTSEEEE
T ss_pred cCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcchhhhh
Confidence 9999953211211 111110 11 0 012223333 34556765 356777889
Q ss_pred EEecccCccCHHH-HHHHHH---Hhhc------CCcEEEEEecCCccc------cc------------------------
Q 002589 816 CITRLVPQKGVHL-IRHAIY---RTLE------LGGQFILLGSSPVPH------IQ------------------------ 855 (904)
Q Consensus 816 fVGRL~~qKGIdl-LIeAia---rLle------~nvqLVLVGdGp~~~------le------------------------ 855 (904)
++-|+..+|...+ +++.+. ++.+ ..+++|++|.....+ ++
T Consensus 449 ~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFl 528 (713)
T PF00343_consen 449 QARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFL 528 (713)
T ss_dssp EES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEE
T ss_pred hhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEee
Confidence 9999999999998 444444 4443 257899999743211 00
Q ss_pred -------HHHHHHhcCeEEEcCC--CCCChHHHHHHccC---CcccccCC
Q 002589 856 -------VYPILLSSFSFLRKHI--FNICNLYIKLGQGG---DLTVNNNC 893 (904)
Q Consensus 856 -------ke~LyAaADVfVlPS~--~EpFGLv~LEAMg~---gl~V~~~v 893 (904)
.+.++.+|||...-|+ +|++|.+-|-||-= .+.|.||.
T Consensus 529 enYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~ 578 (713)
T PF00343_consen 529 ENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGW 578 (713)
T ss_dssp TT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTC
T ss_pred cCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccch
Confidence 0189999999999887 79999999999933 34455553
No 113
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.0072 Score=68.72 Aligned_cols=124 Identities=15% Similarity=-0.003 Sum_probs=67.5
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCe-EEEEeeCCCCCcccccccccccceeeecccCCccccceeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHL-VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHe-V~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~ 590 (904)
|+|++.+. .+||-=.....|+++|.++|++ |.++...++ +.. .+ ..
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~-~e~----~l----------------------~~ 47 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVLGTGDG-LEA----FL----------------------VK 47 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEeccccc-cee----ee----------------------cc
Confidence 45565554 4688888888999999999996 555533322 110 00 01
Q ss_pred eCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCC
Q 002589 591 IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (904)
Q Consensus 591 v~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~gi 670 (904)
..+++.+.|+.. .+++...+....++.++......+...++ ..+||+|-+-.++.+. ++.+... +.++
T Consensus 48 ~~~~~~~~I~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~il~--~~kPd~vig~Ggyvs~-P~~~Aa~-----~~~i 115 (357)
T COG0707 48 QYGIEFELIPSG----GLRRKGSLKLLKAPFKLLKGVLQARKILK--KLKPDVVIGTGGYVSG-PVGIAAK-----LLGI 115 (357)
T ss_pred ccCceEEEEecc----cccccCcHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEecCCcccc-HHHHHHH-----hCCC
Confidence 236667777642 22222222211112222222233334444 4699999997665544 2334332 3579
Q ss_pred eEEEEecCCc
Q 002589 671 RVCFTCHNFE 680 (904)
Q Consensus 671 PiV~TIHnl~ 680 (904)
|++.+..|..
T Consensus 116 Pv~ihEqn~~ 125 (357)
T COG0707 116 PVIIHEQNAV 125 (357)
T ss_pred CEEEEecCCC
Confidence 9999888763
No 114
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.57 E-value=0.002 Score=80.57 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=127.4
Q ss_pred cEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHH
Q 002589 642 DIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGA 721 (904)
Q Consensus 642 DIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~a 721 (904)
|+|=+||+|-.++| .+++.. ....++-|.+|-. ||...+..+ +|+. .-+-.+
T Consensus 203 d~VWVhDYhL~llP-~~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP~r-----------------~eiL~g 254 (854)
T PLN02205 203 DFVWIHDYHLMVLP-TFLRKR----FNRVKLGFFLHSP-----FPSSEIYKT-LPIR-----------------EELLRA 254 (854)
T ss_pred CEEEEeCchhhHHH-HHHHhh----CCCCcEEEEecCC-----CCChHHHhh-CCcH-----------------HHHHHH
Confidence 89999999998884 454431 3678999999975 344333211 1111 112346
Q ss_pred hhhcCEEEEcCHHHHHHHHhhcC-CCCcccc-----cc--c--CCCeEEEEecCccCCCCCCCccchhhhccccccccch
Q 002589 722 IVFSNIVTTVSPSYAQEVRTSEG-GQGLHST-----LN--F--HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGK 791 (904)
Q Consensus 722 i~~AD~VItVS~syaeeI~~~~~-g~GL~~~-----L~--~--~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK 791 (904)
+..||.|-+-+..|++.....-. -.|+.-. +. . ..-++.+.|=|||++.|.... ...+.
T Consensus 255 lL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~--------~~~~~--- 323 (854)
T PLN02205 255 LLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVL--------SLPET--- 323 (854)
T ss_pred HhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHh--------cChhH---
Confidence 67799999999888887654200 0012100 00 1 223466778899987663210 00000
Q ss_pred hhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC------CcEEEEEecCC---ccccc---HH--
Q 002589 792 AENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSP---VPHIQ---VY-- 857 (904)
Q Consensus 792 ~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~------nvqLVLVGdGp---~~~le---ke-- 857 (904)
.....+++++++- +++.+|+-|.|+..-||+..=+.|+.++++. .+.||-+.... .+.++ .+
T Consensus 324 ~~~~~~l~~~~~~----~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~ 399 (854)
T PLN02205 324 EAKVKELIKQFCD----QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETH 399 (854)
T ss_pred HHHHHHHHHHhcc----CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHH
Confidence 1123456777752 2457899999999999999999999999862 34555554321 11111 10
Q ss_pred -------------------------------HHHHhcCeEEEcCCCCCChHHHHHHccCC
Q 002589 858 -------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGD 886 (904)
Q Consensus 858 -------------------------------~LyAaADVfVlPS~~EpFGLv~LEAMg~g 886 (904)
.+|+.||++++.|..+++-||..|-.++.
T Consensus 400 ~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~ 459 (854)
T PLN02205 400 STVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISR 459 (854)
T ss_pred HHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEc
Confidence 89999999999999999999999987653
No 115
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.36 E-value=0.022 Score=64.33 Aligned_cols=254 Identities=14% Similarity=0.087 Sum_probs=136.7
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeecccCCccccceeeeeee
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l~~~~v~~L~~l~i~v~s~fdG~~~~~~V~~g~v 591 (904)
|||++-... +|. .-+...+.+.|.++||+|.|.+..+++.. +|- ..
T Consensus 1 MkIwiDi~~-p~h------vhfFk~~I~eL~~~GheV~it~R~~~~~~-----~LL----------------------~~ 46 (335)
T PF04007_consen 1 MKIWIDITH-PAH------VHFFKNIIRELEKRGHEVLITARDKDETE-----ELL----------------------DL 46 (335)
T ss_pred CeEEEECCC-chH------HHHHHHHHHHHHhCCCEEEEEEeccchHH-----HHH----------------------HH
Confidence 788876653 333 57889999999999999999998876421 110 02
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHh-CCCccEEEEcCCchhhHHHHHHHhhccCCCCCC
Q 002589 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (904)
Q Consensus 592 ~GV~V~fIdp~~Ps~~F~r~~iYg~~dd~~Rfs~FsraaLe~Lrq~-g~kPDIIHaHdW~talvapL~~~~ya~~gL~gi 670 (904)
.|++...+.. |. ...+ .+.........++++.. .++|||+-++....+. .... ..|+
T Consensus 47 yg~~y~~iG~-~g------~~~~------~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~---~va~------~lgi 104 (335)
T PF04007_consen 47 YGIDYIVIGK-HG------DSLY------GKLLESIERQYKLLKLIKKFKPDVAISFGSPEAA---RVAF------GLGI 104 (335)
T ss_pred cCCCeEEEcC-CC------CCHH------HHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHHH---HHHH------HhCC
Confidence 3555554432 10 1111 11111222222222221 4689999988533322 1111 2478
Q ss_pred eEEEEecCCcccCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCccc
Q 002589 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHS 750 (904)
Q Consensus 671 PiV~TIHnl~~qG~~p~~~L~~~GL~~~~l~~~drLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~ 750 (904)
|.|.-..+-.-. . . .+..+-+||.+++++- +.+.... .+| .
T Consensus 105 P~I~f~D~e~a~--~-~------------------------------~~Lt~Pla~~i~~P~~-~~~~~~~-~~G--~-- 145 (335)
T PF04007_consen 105 PSIVFNDTEHAI--A-Q------------------------------NRLTLPLADVIITPEA-IPKEFLK-RFG--A-- 145 (335)
T ss_pred CeEEEecCchhh--c-c------------------------------ceeehhcCCeeECCcc-cCHHHHH-hcC--C--
Confidence 988877653100 0 0 0112335888888773 3333222 222 1
Q ss_pred ccccCCCeEEEE-ecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccC----
Q 002589 751 TLNFHSKKFVGI-LNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG---- 825 (904)
Q Consensus 751 ~L~~~~~Ki~VI-PNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKG---- 825 (904)
+ -.+. +||++--.|-.. |.+ ...+.+.+|+. +.+.|+ =|..+.+.
T Consensus 146 ------~-~~i~~y~G~~E~ayl~~--------F~P---------d~~vl~~lg~~----~~~yIv--vR~~~~~A~y~~ 195 (335)
T PF04007_consen 146 ------K-NQIRTYNGYKELAYLHP--------FKP---------DPEVLKELGLD----DEPYIV--VRPEAWKASYDN 195 (335)
T ss_pred ------c-CCEEEECCeeeEEeecC--------CCC---------ChhHHHHcCCC----CCCEEE--EEeccccCeeec
Confidence 1 1244 889887655211 221 13456788865 235543 26655433
Q ss_pred -H-HHHHHHHHHhhcCCcEEEEEec-CCcccc-c------------HHHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 826 -V-HLIRHAIYRTLELGGQFILLGS-SPVPHI-Q------------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 826 -I-dlLIeAiarLle~nvqLVLVGd-Gp~~~l-e------------ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
- ..+-+.+..+.+.+-.+|++-. ++++.+ + -..+++-||++|--+ |....||..+|+|+
T Consensus 196 ~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGtPa 270 (335)
T PF04007_consen 196 GKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGG-----GTMAREAALLGTPA 270 (335)
T ss_pred CccchHHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCC-----cHHHHHHHHhCCCE
Confidence 1 2244555555554433555543 222211 1 117899999999755 78899999999999
Q ss_pred ccCCCc
Q 002589 890 NNNCEP 895 (904)
Q Consensus 890 ~~~v~~ 895 (904)
+.--.|
T Consensus 271 Is~~~g 276 (335)
T PF04007_consen 271 ISCFPG 276 (335)
T ss_pred EEecCC
Confidence 864444
No 116
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.081 Score=69.56 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=71.7
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHH
Q 002589 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHE 212 (904)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (904)
++++-..+...+.++-.++. -...+..+.++..|.+.++.+|..|+..+..++.- ..++=++++++++..+
T Consensus 767 le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--------~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--------RTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHH
Confidence 44444444444444444433 34445555666666777777777776666655431 1334455555555555
Q ss_pred hhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 002589 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS 292 (904)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (904)
+.. +..+++.+.++-..+++.|..|+.++.++.+....+..-...|..
T Consensus 838 l~~--------------------------------l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~ 885 (1311)
T TIGR00606 838 LDT--------------------------------VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885 (1311)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 233444444444455555555555544444444434333345555
Q ss_pred HHhhHHHHHhhhhcchhhhhc
Q 002589 293 LESSLKELESKLSISQEDVAK 313 (904)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ 313 (904)
|+..|.+|...+....+.+.+
T Consensus 886 le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444443
No 117
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.25 E-value=0.1 Score=66.67 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=26.7
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002589 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (904)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (904)
++..+..-+...+..+--++.....+-..++.+-.+.+.+..++..++..+...
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~ 728 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556665555555554444444444444444444444444444444333
No 118
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.25 E-value=0.0014 Score=77.85 Aligned_cols=78 Identities=8% Similarity=-0.117 Sum_probs=65.1
Q ss_pred cEEEEEe--cccCccCHHHHHHHHHHhhc--CCcEEEEEecCCcc----cc---------c-------------------
Q 002589 812 PLVGCIT--RLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP----HI---------Q------------------- 855 (904)
Q Consensus 812 plVgfVG--RL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~----~l---------e------------------- 855 (904)
..+++++ || ++|-++.+|+|+..+.. +++.|.+.|.|... .+ +
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 4678888 99 99999999999999864 58999999976521 00 1
Q ss_pred ----------H-----------H--HHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 856 ----------V-----------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 856 ----------k-----------e--~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
. . ..|..+.++|.+|..|+|| +++||++.|+|+++
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqIn 456 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQIN 456 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeee
Confidence 0 1 8899999999999999999 99999999999863
No 119
>PRK02224 chromosome segregation protein; Provisional
Probab=97.20 E-value=0.11 Score=65.19 Aligned_cols=119 Identities=19% Similarity=0.336 Sum_probs=60.9
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh------------------hhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD------------------ADERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
+-.+..+++.++++-..++.-+.+++..+..... ..+.+-.+......++..+.+||..+..
T Consensus 414 l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655555555555555444431 1123334444455555555666655555
Q ss_pred chhhhhccccc---hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 002589 307 SQEDVAKLSTL---KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (904)
Q Consensus 307 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (904)
.......+..+ +-+-..+.++++.++.+++....+.+.+ ......|++++.+|++.+
T Consensus 494 ~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~---~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK---RERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 55544443333 2333345566666666666544444433 233345555555555555
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.14 E-value=0.041 Score=66.75 Aligned_cols=193 Identities=28% Similarity=0.403 Sum_probs=112.8
Q ss_pred HhhhhhhHHHhhhhchhhhhhhhhhhhh----hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002589 170 ALQGEINALEMRLAETDARIRVAAQEKI----HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (904)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (904)
.|+++...+.-|..+....+..-..+|. +|.-||.+|.+|++.++.....+ .|.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-----------~pa----------- 76 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-----------PPA----------- 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-----------ccc-----------
Confidence 3455555555555555555544444443 46677778888888887653221 111
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002589 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (904)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (904)
..++.-..|.+|=..|+..++.|..++......-+.+-.|-.| .+..|.+||.++..-++
T Consensus 77 -~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~E---qEerL~ELE~~le~~~e---------------- 136 (617)
T PF15070_consen 77 -GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQE---QEERLAELEEELERLQE---------------- 136 (617)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------------
Confidence 2233334566666667777888888887766665655555433 36667777766654333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH---Hhhhh---hhhhchHHH------HHHHHHHHHHHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES---LDEAN---IYKLSSEKM------QQYNELMQQKMKLL 393 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~ 393 (904)
..+..+.||+...+--.-|.-.+.||.+|..++..|+.. |-..| .+++.++.- .+|+ .|++++..+
T Consensus 137 -~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-~l~~~l~~~ 214 (617)
T PF15070_consen 137 -QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-ELQEKLHNL 214 (617)
T ss_pred -HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 223344455443333333445689999999999999984 44444 455555422 1122 467777777
Q ss_pred HHhhccchHHHHH
Q 002589 394 EERLQRSDEEIHS 406 (904)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (904)
++++...+.++.+
T Consensus 215 ~e~le~K~qE~~~ 227 (617)
T PF15070_consen 215 KEKLELKSQEAQS 227 (617)
T ss_pred HHHHHhhhHHHHH
Confidence 7777777766665
No 121
>PRK02224 chromosome segregation protein; Provisional
Probab=97.12 E-value=0.11 Score=65.26 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH--HHhhhhhhHHHhhhhchhhhhh
Q 002589 157 ALEDLHKILQEK--EALQGEINALEMRLAETDARIR 190 (904)
Q Consensus 157 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 190 (904)
-+++++.-|.++ ..++..++.++.++++...++.
T Consensus 188 ~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 188 SLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 4556666666666666655555
No 122
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.049 Score=61.38 Aligned_cols=221 Identities=16% Similarity=0.102 Sum_probs=120.5
Q ss_pred CCCccEEEEcCCchhhHH-HHHHHhhccCCCCCCeEEEEecCCcccCCCChhhhh-hcCCcccccCCcccccccccccch
Q 002589 638 GKQPDIIHCHDWQTAFVA-PLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELA-SCGLDVQQLNRPDRMQDNSAHDRI 715 (904)
Q Consensus 638 g~kPDIIHaHdW~talva-pL~~~~ya~~gL~giPiV~TIHnl~~qG~~p~~~L~-~~GL~~~~l~~~drLqd~~~~~~i 715 (904)
-..||+|-.++..+-+.- ..++.. .+.++++++-+||+.|.- .+. ..|.. ..+.+ + .-
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~----~l~~~KfiIDWHNy~Ysl-----~l~~~~g~~-h~lV~---l-------~~ 160 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYS----ILTGAKFIIDWHNYGYSL-----QLKLKLGFQ-HPLVR---L-------VR 160 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHHHHH----HHhcceEEEEehhhHHHH-----HHHhhcCCC-CchHH---H-------HH
Confidence 468999999997653220 111111 147899999999997640 111 11110 00000 0 01
Q ss_pred hhhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCcc-----CCC----CCCCccchhhhccccc
Q 002589 716 NPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGID-----TDA----WNPATDTFLKVQYNAN 786 (904)
Q Consensus 716 n~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID-----~d~----F~P~~d~~L~~~ys~d 786 (904)
.+++..-+.||.-.||+..+++++... +|+ .+..|+|.--. .+. |.|-... -..|.+.
T Consensus 161 ~~E~~fgk~a~~nLcVT~AMr~dL~qn---Wgi--------~ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f~ar 227 (444)
T KOG2941|consen 161 WLEKYFGKLADYNLCVTKAMREDLIQN---WGI--------NRAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPFRAR 227 (444)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHh---cCC--------ceeEEEecCCCCCCCchhHHHHHHhhhccc--cchhhhc
Confidence 133455567899999999999888763 343 13344433111 000 1110000 0011111
Q ss_pred cccchhhhHHHHHHHcC---CCCCCCCCcEEEEEecccCccCHHHHHHHHHHh-----hc----CCcEEEEEecCCccc-
Q 002589 787 DLQGKAENKESIRKHLG---LSSADARKPLVGCITRLVPQKGVHLIRHAIYRT-----LE----LGGQFILLGSSPVPH- 853 (904)
Q Consensus 787 dl~gK~~~K~aLRk~LG---L~~~d~d~plVgfVGRL~~qKGIdlLIeAiarL-----le----~nvqLVLVGdGp~~~- 853 (904)
..+++...+.++-+++. .........+++.-..++|...+..|++|+... .+ ..+-++|-|.||..+
T Consensus 228 ~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~ 307 (444)
T KOG2941|consen 228 EPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEK 307 (444)
T ss_pred ccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHH
Confidence 23444455555555543 111112334567778899999999999999732 22 256788889999763
Q ss_pred c----cHH------------------HHHHhcCeEEEc--CCC-CCChHHHHHHccCCccccc
Q 002589 854 I----QVY------------------PILLSSFSFLRK--HIF-NICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 854 l----eke------------------~LyAaADVfVlP--S~~-EpFGLv~LEAMg~gl~V~~ 891 (904)
| ++. .+++.||.-|+- |-. =-.++-++.-.|+|+||.+
T Consensus 308 Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA 370 (444)
T KOG2941|consen 308 YSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 370 (444)
T ss_pred HHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceee
Confidence 1 110 899999988773 322 1334456666688888753
No 123
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.07 E-value=0.1 Score=61.93 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 002589 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS 307 (904)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (904)
..+-.+++.+..+...++..++.++.++.++. +.++.+..++.+.+.+++.+..++.-....
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777777776663 334445556666666666666666554433
No 124
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.00 E-value=0.16 Score=65.13 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhcc
Q 002589 386 MQQKMKLLEERLQR 399 (904)
Q Consensus 386 ~~~~~~~~~~~~~~ 399 (904)
++.++..++.++..
T Consensus 956 l~~~l~~l~~~i~~ 969 (1164)
T TIGR02169 956 VQAELQRVEEEIRA 969 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 125
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.96 E-value=0.24 Score=63.19 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=8.7
Q ss_pred CCcHHHHHHHHHHHHH
Q 002589 527 VGGLGDVVAGLGKALQ 542 (904)
Q Consensus 527 vGGLg~vV~~LarAL~ 542 (904)
.||. .....|+++++
T Consensus 1091 S~g~-~~~~~l~~~~~ 1105 (1179)
T TIGR02168 1091 SGGE-KALTALALLFA 1105 (1179)
T ss_pred CccH-HHHHHHHHHHH
Confidence 5665 44445777665
No 126
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.95 E-value=0.34 Score=61.83 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=33.7
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhh
Q 002589 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDA 187 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (904)
..+.++-.=+.+.++.+.-+++....+-+.+.++-.+.+.++.++..++..+.+...
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555555555666666666666666666665555433
No 127
>PRK03918 chromosome segregation protein; Provisional
Probab=96.89 E-value=0.3 Score=61.24 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEEec
Q 002589 826 VHLIRHAIYRTLELGGQFILLGS 848 (904)
Q Consensus 826 IdlLIeAiarLle~nvqLVLVGd 848 (904)
...+++++..+...+.+++++-.
T Consensus 830 ~~~l~~~l~~~~~~~~~iiiith 852 (880)
T PRK03918 830 RRKLVDIMERYLRKIPQVIIVSH 852 (880)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEC
Confidence 33455555444333344555443
No 128
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.09 Score=65.43 Aligned_cols=244 Identities=25% Similarity=0.298 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcc
Q 002589 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (904)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (904)
.+|+++..+-.|.++.|.+++.+|..|+.+ -+.+.|++ .+..||+-..++|+.-.-.
T Consensus 674 ~~l~~l~~~~~~~~~~q~el~~le~eL~~l-----e~~~~kf~--~l~~ql~l~~~~l~l~~~r---------------- 730 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKELEALERELKSL-----EAQSQKFR--DLKQQLELKLHELALLEKR---------------- 730 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHH----------------
Confidence 455666666677788888888888888877 34455554 6788888888888763111
Q ss_pred cccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhh----hHHhhHHHHHhhhhcchhhh
Q 002589 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS----SLESSLKELESKLSISQEDV 311 (904)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 311 (904)
...+.-|-+..++..+++|=-.+++.| |+..-.+++-++-+.++|+--. .=++.|+||+..+-.+-.-+
T Consensus 731 ----~~~~e~~~~~~~~~~~~e~v~e~~~~I---ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 731 ----LEQNEFHKLLDDLKELLEEVEESEQQI---KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred ----HhcChHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 112223444555555544432222222 2222334444455555554322 12344455554443322211
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh-hhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 002589 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL-QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (904)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (904)
.+...-|+|-++.-..|.--..+..+++..+ +|.+.+.++++.|++.+...-. ...+.+.-.+-.|+++
T Consensus 804 -------e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~---kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 804 -------EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA---KVDKVEKDVKKAQAEL 873 (1174)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHH
Confidence 1222334444443333333333444444433 3456677788888887765432 2344455677889999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHH
Q 002589 391 KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF 445 (904)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (904)
+.....+...|.+|..++..-. .+.+-..+.+-+.++ +.+-+..|+.+-
T Consensus 874 ~~~k~k~~~~dt~i~~~~~~~e----~~~~e~~~~~l~~kk--le~e~~~~~~e~ 922 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGLLTSQE----KCLSEKSDGELERKK--LEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHHhhhHHHhhhhhHHH----HHHHHhhcccchHHH--HHhHHHHhhhhH
Confidence 9999999999999988665444 444433333333344 455555566443
No 129
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.65 E-value=0.2 Score=54.82 Aligned_cols=73 Identities=8% Similarity=-0.064 Sum_probs=52.8
Q ss_pred cEEEEEecccCccCHHHHHHHHHHhhcCCcEE-EEEecCCcc--cccH-----------------HHHHHhcCeEEEcCC
Q 002589 812 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQF-ILLGSSPVP--HIQV-----------------YPILLSSFSFLRKHI 871 (904)
Q Consensus 812 plVgfVGRL~~qKGIdlLIeAiarLle~nvqL-VLVGdGp~~--~lek-----------------e~LyAaADVfVlPS~ 871 (904)
.++++.|-..+.+....+++|+..+. .++++ +++|.+... .+++ ..+|+.||++|.+
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~-- 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGA-- 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEEC--
Confidence 46788888888777778888887653 34443 356765311 1111 1999999999995
Q ss_pred CCCChHHHHHHccCCcccc
Q 002589 872 FNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 872 ~EpFGLv~LEAMg~gl~V~ 890 (904)
.|.|..|++++|+|++
T Consensus 249 ---~G~T~~E~~a~g~P~i 264 (279)
T TIGR03590 249 ---AGSTSWERCCLGLPSL 264 (279)
T ss_pred ---CchHHHHHHHcCCCEE
Confidence 6899999999999885
No 130
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.61 E-value=0.31 Score=58.22 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=79.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-------hHHHHH--Hhhhhh------HHhhHHHHHhhhhcchhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD-------ERVVML--EMERSS------LESSLKELESKLSISQEDV 311 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~ 311 (904)
.+.+|.+.|+.++..++..|..|...+..+.... .++..+ ++|... |...+.+++..+..++..-
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566666666666655555555555444433222 112112 222221 2233333444444444444
Q ss_pred hccccchhhhhhHHH-------HHHHHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHHHhhhhhhhhchHHHH
Q 002589 312 AKLSTLKVECKDLYE-------KVENLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (904)
Q Consensus 312 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (904)
.++..|+.+...+-+ +++-|..-|..|.+.-|+.+.-|-+ +.+|..++......|+++. .+..
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~------~q~~ 356 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR------SQWA 356 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 445555554444433 3444555555666665666554432 3333333333333333333 2233
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 002589 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (904)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
+.-..+++-+..-.++++.-..++...=+-|++.-.|=|
T Consensus 357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q 395 (546)
T PF07888_consen 357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ 395 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555566666666666665566666555544
No 131
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.32 Score=64.13 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=66.4
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (904)
...++.+..|-..++..|+.|..++..... +..+..++.|...++..+..+..++...++...++ +.+...|.++.
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~---~~eI~~Lq~ki 866 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ---QEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334456677777777888888887775544 44667777777777777777776666655544433 33333444444
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 002589 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (904)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (904)
.++.....+..+ .+++-++|...++.|++.+++.
T Consensus 867 ~el~~~klkl~~-------~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 867 NELKSEKLQIGT-------NLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333 4556666777777666666544
No 132
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.57 E-value=0.84 Score=56.67 Aligned_cols=181 Identities=26% Similarity=0.381 Sum_probs=104.8
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002589 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (904)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (904)
.+++=||-.||-|+.|+...|++- .. .-+-||..|..-|..||+.+-.|+.-..+-
T Consensus 339 Er~deletdlEILKaEmeekG~~~-~~-----------------------~ss~qfkqlEqqN~rLKdalVrLRDlsA~e 394 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDG-QA-----------------------ASSYQFKQLEQQNARLKDALVRLRDLSASE 394 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-cc-----------------------cchHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 345556666666666666664441 01 114566677777777777666665432221
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH-------HHh
Q 002589 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI-------SVL 349 (904)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 349 (904)
+ --..++-||-.-..+.+.+|++.- ..|..++++++..++....|+|-|. ..-
T Consensus 395 k---~d~qK~~kelE~k~sE~~eL~r~k-----------------E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 395 K---QDHQKLQKELEKKNSELEELRRQK-----------------ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred H---HHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 1 122344444444444444444321 2577888888888888888888764 234
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc------------------cchHHHHH---HH
Q 002589 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ------------------RSDEEIHS---YV 408 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~---~~ 408 (904)
+.|=+|.+||.-||+-.+.- |.+.+.+|.|++--+.+|-+|+ ..-+-++. -|
T Consensus 455 dknlnlEekVklLeetv~dl-------Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI 527 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDL-------EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTI 527 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56888999999998876543 4444555555554444443333 22222222 25
Q ss_pred HHHHHHHHHHHHHHHhhHhh
Q 002589 409 QLYQESVKEFQDTLHSLKEE 428 (904)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ 428 (904)
.+|.+-|.-.|+-|..++..
T Consensus 528 ~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 528 KKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777776543
No 133
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.56 E-value=0.37 Score=60.21 Aligned_cols=125 Identities=26% Similarity=0.346 Sum_probs=91.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDL 324 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 324 (904)
--.+..||+-|..|-+.-++||++|.....-.|- +.+|+|--.|...+.+|++....-|.-..+| ++|+..-..|
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778999999999999999999877655555 8899999999999999998887766555543 4555444333
Q ss_pred ---HHHHHH-----------HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhch
Q 002589 325 ---YEKVEN-----------LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSS 376 (904)
Q Consensus 325 ---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (904)
|+-..+ +|..-...|. +.|.-.+=+|+.+-.-+..++++==|++|+|...
T Consensus 342 ~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ralkllLEnrrlt~tleelqsss~Ee~~SK~le 405 (1195)
T KOG4643|consen 342 DGQMELLQIFSENEELENESLQVENEQLTS--DRALKLLLENRRLTGTLEELQSSSYEELISKHLE 405 (1195)
T ss_pred hhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 443333 3333333333 6688889999999999999999888888888654
No 134
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.45 E-value=0.35 Score=65.00 Aligned_cols=135 Identities=22% Similarity=0.363 Sum_probs=103.3
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 002589 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (904)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (904)
.--+....++..+..|+..++||..+|..+-.-+.+-+...+- .|-.+|-.|+..|+..+..--.++-.+ .-..+
T Consensus 1762 ~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~--~Learir~LE~~l~~E~~~~~e~~k~~---rk~er 1836 (1930)
T KOG0161|consen 1762 KEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIA--KLEARIRELESELEGEQRRKAEAIKGL---RKKER 1836 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHHHHHhHhhhhhHHHhHHH---HHHHH
Confidence 3345567788888899999999999999988887777765553 678899999999999887766554433 34556
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002589 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (904)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
+|..|+.-+++ .+..-+.+|...|.+++|++.+.-.+....++..++...|...--+.++
T Consensus 1837 ~vkEl~~q~ee---d~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~ 1896 (1930)
T KOG0161|consen 1837 RVKELQFQVEE---DKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEE 1896 (1930)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666655 4566778888999999999999999988888888877666655444444
No 135
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=96.38 E-value=0.15 Score=57.53 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=46.3
Q ss_pred CcEEEEEecccC---ccCHHHHHHHHHHhhcCCcEEEE-EecCCcc------c------ccHHHHHHhcCeEEEcCCCCC
Q 002589 811 KPLVGCITRLVP---QKGVHLIRHAIYRTLELGGQFIL-LGSSPVP------H------IQVYPILLSSFSFLRKHIFNI 874 (904)
Q Consensus 811 ~plVgfVGRL~~---qKGIdlLIeAiarLle~nvqLVL-VGdGp~~------~------leke~LyAaADVfVlPS~~Ep 874 (904)
.++++..|.... ++....+++|+..+ +.++++ +|.++.. . +....+|..||++|.-.-
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~~I~hgG--- 313 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLLPRCAAVVHHGG--- 313 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCccccccCCCCceEEeCCCCHHHHhhhhheeeecCC---
Confidence 356677788753 44555666666554 556554 5654321 1 122389999999995432
Q ss_pred ChHHHHHHccCCcccc
Q 002589 875 CNLYIKLGQGGDLTVN 890 (904)
Q Consensus 875 FGLv~LEAMg~gl~V~ 890 (904)
..+.+||+.+|+|++
T Consensus 314 -~~t~~eal~~GvP~v 328 (401)
T cd03784 314 -AGTTAAALRAGVPQL 328 (401)
T ss_pred -chhHHHHHHcCCCEE
Confidence 378999999998873
No 136
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.26 E-value=2.6 Score=55.20 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=25.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 002589 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARI 189 (904)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (904)
+..|..-|...+..+.-+-.....+-..+..+....+++..++..++.++.+.+..+
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333334444444444455555555555544444433
No 137
>PRK03918 chromosome segregation protein; Provisional
Probab=96.23 E-value=1.9 Score=54.24 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 002589 409 QLYQESVKEFQDTLHSLK 426 (904)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~ 426 (904)
..|...+++-+.-+..|+
T Consensus 455 ~~~~~ei~~l~~~~~~l~ 472 (880)
T PRK03918 455 EEYTAELKRIEKELKEIE 472 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555444443
No 138
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=1.3 Score=56.65 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.4
Q ss_pred ccccccccCCCccccccchhHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002589 115 KESLVLNCDGGEELSTSQLDNLIS------MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINA 177 (904)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (904)
|++.+.+.++.+-| --|||+|| -|.--..-+..||.-|.+-...+.-+.+||.+|.+-.|+
T Consensus 240 MKPk~~~e~d~GmL--EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~ 306 (1293)
T KOG0996|consen 240 MKPKAQTENDEGML--EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNE 306 (1293)
T ss_pred cCCCCCCCCcchHH--HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44544444443332 24788887 467777778899999999999999999999999887665
No 139
>PRK11637 AmiB activator; Provisional
Probab=96.20 E-value=0.38 Score=55.97 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=57.4
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHH
Q 002589 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKL 209 (904)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
.-+|+++-.-|+..++.|--+....-.+...+..+-.+.+.++.+|+.++..+++++.+|.-..+ .+.-++++++++
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~---eI~~~q~~l~~~ 122 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA---SIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44677777777777777777777777777777777777777788888887777777777765433 233455555555
Q ss_pred HHHhhhc
Q 002589 210 QHELTHR 216 (904)
Q Consensus 210 ~~~~~~~ 216 (904)
+..|..+
T Consensus 123 ~~~l~~r 129 (428)
T PRK11637 123 ERLLAAQ 129 (428)
T ss_pred HHHHHHH
Confidence 5555443
No 140
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.18 E-value=1.2 Score=58.15 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=10.4
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHh
Q 002589 248 FSKELDSLKTENLSLKNDIKVLKAEL 273 (904)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (904)
+..++..++.+...++..+..++.++
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~ 851 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEEL 851 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444433333
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.14 E-value=0.056 Score=55.73 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=28.3
Q ss_pred hHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCC
Q 002589 719 KGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAW 771 (904)
Q Consensus 719 K~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F 771 (904)
..++..||..++++..-+...-. .-..|+.||+-|||++.+
T Consensus 130 l~~l~~~D~~isPT~wQ~~~fP~------------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 130 LLALEQADAGISPTRWQRSQFPA------------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHhCCcCcCCCHHHHHhCCH------------HHHcCcEEeecccchhhc
Confidence 45677899999888653332111 124799999999999865
No 142
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.09 E-value=1.6 Score=48.30 Aligned_cols=164 Identities=23% Similarity=0.380 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccccc
Q 002589 161 LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL 240 (904)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (904)
++.+-.||..|+.+++.+...+.+...++.-.. -...-++.++.+||+++-..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~---~~~~~le~el~~lrk~ld~~------------------------ 115 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEEL---AERKDLEEELESLRKDLDEE------------------------ 115 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhh------------------------
Confidence 444555555555555555555555444433322 22335678888888766542
Q ss_pred CCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh-hhhhhhHH---HHHH---hhhhhHHhhHHHHHhhhhcchhhhhc
Q 002589 241 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS-VKDADERV---VMLE---MERSSLESSLKELESKLSISQEDVAK 313 (904)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (904)
+..-..|..+-..|+++|.|+|..-.. +.+....+ ...+ .-...|.++|+++-..... .
T Consensus 116 --------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~------~ 181 (312)
T PF00038_consen 116 --------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEE------I 181 (312)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHH------H
T ss_pred --------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHH------H
Confidence 333344455555566666666543222 22222222 1111 1133477777776544421 1
Q ss_pred cccchhhhhhHHH-HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002589 314 LSTLKVECKDLYE-KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (904)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (904)
+..-+.|...||. |++.++.-.... .+.+-.+-....+++.+++.|+..|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~---~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKS---SEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccccccc---ccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 1222334446654 566666555443 333333455666777777777766544
No 143
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.06 E-value=2.2 Score=57.89 Aligned_cols=102 Identities=30% Similarity=0.380 Sum_probs=62.5
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhH--------HHHHHhh---hhhHHhhHHHHHhhhhcchhhh
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER--------VVMLEME---RSSLESSLKELESKLSISQEDV 311 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 311 (904)
+.+-.|.+|=..+.+-+..|.+|++..+.+....+..-.+ -..||+| |..++...+.||..+..+|+.+
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344666666667777777777777777776665543322 2334444 4458888899999998888887
Q ss_pred hccccch-----------hhhhhHHHHHHHHHHHHHHHhhhhhh
Q 002589 312 AKLSTLK-----------VECKDLYEKVENLQGLLAKATKQADQ 344 (904)
Q Consensus 312 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (904)
..+...+ .|--.+..++++++.++..++++..+
T Consensus 1058 ~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~e 1101 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKE 1101 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7543332 22333445566666666665555443
No 144
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.05 E-value=0.63 Score=58.07 Aligned_cols=224 Identities=21% Similarity=0.323 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccc
Q 002589 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (904)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (904)
|.+.+..+-+|.|.++.++..|...+-++..+|.---+ ..+-..+++++|...|-..|.+-..+.. . .....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~---~l~~~~eei~kL~e~L~~~g~~~~~~~~----~-~~~~~ 183 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQ---TLDKADEEIEKLQEMLQSKGLSAEAEEE----D-NEALR 183 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCcccchhh----h-hHHHH
Confidence 34566667778888888888888888877766654333 2345567888998888666655311111 0 00111
Q ss_pred ccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh----------hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----------KDADERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
........++.|-..+.....+++.++..+..--+...+- -.-|..+..+||--..|+.-+.-|.++...
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1112234455555556666667766655433211111111 112345555665555566666677776666
Q ss_pred chhhhh----ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHH
Q 002589 307 SQEDVA----KLSTLKVECKDLYEKVENLQGLLAKATKQADQA----ISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (904)
Q Consensus 307 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (904)
+.+|-. .+..-+-.++..=.|++.+..-|.+..-.-.-. -..-.++.|.|.-+|.|++||....- ..+.
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~---~~~~ 340 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ---EAEM 340 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 665533 334444445555555666666665543111111 12344788899999999999976543 2345
Q ss_pred HHHHHHHHHHHHH
Q 002589 379 MQQYNELMQQKMK 391 (904)
Q Consensus 379 ~~~~~~~~~~~~~ 391 (904)
||.-+|.|+.++.
T Consensus 341 Lqsdve~Lr~rle 353 (775)
T PF10174_consen 341 LQSDVEALRFRLE 353 (775)
T ss_pred HHHhHHHHHHHHH
Confidence 5555666555544
No 145
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=95.94 E-value=0.032 Score=65.24 Aligned_cols=116 Identities=5% Similarity=-0.093 Sum_probs=80.9
Q ss_pred hcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcC
Q 002589 724 FSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG 803 (904)
Q Consensus 724 ~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LG 803 (904)
..|.||+..+.-.+++.. .++ +..++.+||-|+=.. + |..
T Consensus 239 ~~~~iIv~T~~q~~di~~-r~~---------~~~~~~~ip~g~i~~-~-~~~---------------------------- 278 (438)
T TIGR02919 239 RNKKIIIPNKNEYEKIKE-LLD---------NEYQEQISQLGYLYP-F-KKD---------------------------- 278 (438)
T ss_pred ccCeEEeCCHHHHHHHHH-HhC---------cccCceEEEEEEEEe-e-ccc----------------------------
Confidence 357899888776666764 221 245667788887522 1 100
Q ss_pred CCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCc--ccccH------------------HHHHH
Q 002589 804 LSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPV--PHIQV------------------YPILL 861 (904)
Q Consensus 804 L~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~--~~lek------------------e~LyA 861 (904)
+....-+++++. +..|+|+..+.+ ++++|-| |.+.+ ..+.+ ..+|.
T Consensus 279 ----~r~~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 279 ----NKYRKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ----cCCcccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHH
Confidence 001123555651 788999999876 5899999 77654 22211 19999
Q ss_pred hcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 862 SSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 862 aADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
.||+++-.|..|+||++++|||+.|+|++.
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~a 376 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILG 376 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEE
Confidence 999999999999999999999999999964
No 146
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.87 E-value=3.3 Score=44.63 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhh
Q 002589 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (904)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (904)
.++..+-.+...-..+-..++++-.|-..|+++|..||..|..++.|+..+.+.=-.++---++.+.-++.|-+
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555566777888888899999999999999999888887766333333333333344444433
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.82 E-value=1.9 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=12.3
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhh
Q 002589 287 EMERSSLESSLKELESKLSISQED 310 (904)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ 310 (904)
..++..+...+.+++.++....++
T Consensus 329 ~~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 329 MDEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444
No 148
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.67 E-value=3.1 Score=50.01 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=4.9
Q ss_pred HHHHHHhhhh
Q 002589 447 SRLLLIIDGW 456 (904)
Q Consensus 447 ~~lll~~d~~ 456 (904)
.+|=.|+|..
T Consensus 448 ~~Le~r~~~~ 457 (546)
T PF07888_consen 448 ERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHh
Confidence 3444555544
No 149
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.64 E-value=0.9 Score=55.70 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 002589 266 IKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQE 309 (904)
Q Consensus 266 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (904)
+..+...+.++. ....++..+-++.+.++..+.+++.++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334444555555 34566777888888888888888888877643
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.61 E-value=2.7 Score=51.51 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhh-----hHh-hhHHHHHHHHHHhhhcccCc
Q 002589 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI-----HVE-LLEDQLQKLQHELTHRGVSE 220 (904)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 220 (904)
+..++|-=.+--+.+.+...||+.....|..||..|++...++.......- -+| =+.++++.|+.|+-
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE------ 97 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------ 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH------
Confidence 444555555667889999999999999999999999997666654432211 112 13333344444331
Q ss_pred ccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHH
Q 002589 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKE 299 (904)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 299 (904)
.|..++...-++|- .|+.. .+-++|+..||+.-..++....|
T Consensus 98 --------------------------~L~~qlqaqv~~ne-----------~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 98 --------------------------SLEEQLQAQVENNE-----------QLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred --------------------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222221 22222 34566666666666666666666
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 002589 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (904)
..+-|...+.|-..+|-----=+.|-+.+..||.-+-+.||.
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 666555555554444433222344556666666655555554
No 151
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.59 E-value=0.84 Score=49.72 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=49.4
Q ss_pred CcEEEEEecccCccCHHHHHHHHHHhhcCCcEEEEEecCCc-c---c-----cc-H--HHHHHhcCeEEEcCCCCCChHH
Q 002589 811 KPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV-P---H-----IQ-V--YPILLSSFSFLRKHIFNICNLY 878 (904)
Q Consensus 811 ~plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~-~---~-----le-k--e~LyAaADVfVlPS~~EpFGLv 878 (904)
..+++++|..... .+++++..+. +.+|+++|.+.. . . +. . ..++++||++|..+ |.+
T Consensus 193 ~~iLv~~gg~~~~----~~~~~l~~~~--~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~-----G~~ 261 (318)
T PF13528_consen 193 PKILVYFGGGGPG----DLIEALKALP--DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKG-----GYT 261 (318)
T ss_pred CEEEEEeCCCcHH----HHHHHHHhCC--CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECC-----CHH
Confidence 3577888887666 5567776653 678888887641 1 1 11 1 18999999999975 555
Q ss_pred -HHHHccCCcccc
Q 002589 879 -IKLGQGGDLTVN 890 (904)
Q Consensus 879 -~LEAMg~gl~V~ 890 (904)
.+||+.+|+|++
T Consensus 262 t~~Ea~~~g~P~l 274 (318)
T PF13528_consen 262 TISEALALGKPAL 274 (318)
T ss_pred HHHHHHHcCCCEE
Confidence 999999998883
No 152
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.49 E-value=2.3 Score=51.12 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 002589 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINAL 178 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (904)
.||.-+-.=+..+++-+-..-..|.+||.+|++.-.-.+.|..+|+..
T Consensus 34 ~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 34 TELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555667777777778899999999988877777777766643
No 153
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.45 E-value=2.1 Score=51.85 Aligned_cols=156 Identities=18% Similarity=0.282 Sum_probs=97.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (904)
.+...++.+++.|..|+..|+.+++.----.+-.+++..++++...+++.+++++.++...... .+.++.++..+-+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e 390 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILK 390 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 4577788889999999999999888744434456677788888888888888777665554444 4444444444544
Q ss_pred HHHHHHHHHHHHhhhhhhHHH----HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchH
Q 002589 327 KVENLQGLLAKATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (904)
+++.+..-.....+.....-. .-++=+.++.++..++..++..++..++..-+..+ ...+.++..|..++....=
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~-~~~~~~i~~l~~~L~~g~V 469 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMF-FEVSDEIEALAEELEEKPI 469 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH-HHHHHHHHHHHHHhccCCC
Confidence 444444333332222221100 11222455667777777888888888766644444 4678888888888888443
Q ss_pred HHHH
Q 002589 403 EIHS 406 (904)
Q Consensus 403 ~~~~ 406 (904)
-+.+
T Consensus 470 Nm~a 473 (569)
T PRK04778 470 NMEA 473 (569)
T ss_pred CHHH
Confidence 4444
No 154
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.38 E-value=3.9 Score=53.80 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=62.2
Q ss_pred cchhhHhhhhhhhhhccc-hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 002589 245 IHSFSKELDSLKTENLSL-KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (904)
+.....+|+.+.+.-.-- +.||+.+...++...+-...+..++++...|.++..++|+++..-...+..- +.-++..
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~--~~~~~~~ 399 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA--FNRQQER 399 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 334455666665544443 4478999999999999999999999999999999999999887654432211 1112223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 002589 324 LYEKVENLQGLLAKATKQADQA 345 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~ 345 (904)
.-++...++.-.+....+.+.+
T Consensus 400 ~~~~~~~~~e~~~~~~~~~~~~ 421 (1201)
T PF12128_consen 400 LQAQQDEIREEKAERREQIEEE 421 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.30 E-value=0.38 Score=48.23 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=79.5
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhh---hhhHHHHhh-hhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 002589 313 KLSTLKVECKDLYEKVENLQGLLAKATKQ---ADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (904)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (904)
|+..|+.|--+|.++++.++.-+..+..+ .++=|..|+ .|+.|...||++++.|.++.-.---+++..+-++-|+.
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 45677888888889998888877655433 344454444 57888999999999999998888888888888899999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHH
Q 002589 389 KMKLLEERLQRSDEEIHSYVQLYQES 414 (904)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (904)
+|.+||+.+..++.-...-..+..+.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877766655543
No 156
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.29 E-value=4.1 Score=54.76 Aligned_cols=176 Identities=21% Similarity=0.257 Sum_probs=107.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh---
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD--- 323 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 323 (904)
.++.++.+++.|+-.+..-+...-..+..+++ -+++++..+.++...-|+.+..-.+++.+|.-|+-+...
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQN------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665544443333333332 233444444444444444444444444444444444333
Q ss_pred ----------------------HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh--hhhchHHH
Q 002589 324 ----------------------LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--YKLSSEKM 379 (904)
Q Consensus 324 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 379 (904)
|-++=..|...+....+ +......||.-|+++|+.+-.-..+-|+ .+.....|
T Consensus 1075 e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL 1151 (1822)
T KOG4674|consen 1075 ELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---RIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDL 1151 (1822)
T ss_pred HHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHH
Confidence 33444444444444333 3456788999999999998776653233 34445668
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
+...-.|+.....++.+++..-.+-..+.+.|..+=+.-++....|..+.++
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999998888888888877656666666666666555
No 157
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=0.98 Score=57.56 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=57.1
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHH------HHHHHHH-HHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhh
Q 002589 130 TSQLDNLISMIRNAEKNILLLNEA------RVQALED-LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (904)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (904)
..+|++...+.++..+-.+-+++. |..-|+- +++...+-..+-..|+-||.++++..+++...+-.+-++..+
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~ 863 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKEL 863 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 345666666665554444334433 3333443 666666666777778888888888888866666677777888
Q ss_pred HHHHHHHHHHhhh
Q 002589 203 EDQLQKLQHELTH 215 (904)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (904)
++++++++.|+-.
T Consensus 864 ~~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 864 EEQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887755
No 158
>PRK01156 chromosome segregation protein; Provisional
Probab=95.25 E-value=4.4 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=14.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHH
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKA 271 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (904)
+..+.+++..|+.+=..++..|..|+.
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 159
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.12 E-value=8.9 Score=48.14 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=95.8
Q ss_pred HHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchh
Q 002589 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSF 248 (904)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (904)
+.+++.++.+||-++|.. -.+|+ .-++-|+||+|+++....-+.... +.
T Consensus 361 ~q~~~ql~~le~~~~e~q----~~~qe------~~~e~eqLr~elaql~a~r~q~ek---------------------a~ 409 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQ----REAQE------NREEQEQLRNELAQLLASRTQLEK---------------------AQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 445666667777766542 22222 223445999999987544221111 00
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (904)
.. .+.+...+.-.++-++.+|.++. .|+.|...|-.+..+.-.++..++.++-+++...- +|=+.|
T Consensus 410 ~~-~ee~e~~~l~~e~ry~klkek~t----------~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~---~L~d~l 475 (980)
T KOG0980|consen 410 VL-VEEAENKALAAENRYEKLKEKYT----------ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT---NLNDQL 475 (980)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHH
Confidence 00 33444455556666777766554 46677788888889999999998888774433333 456666
Q ss_pred HHHHHHHHHHh-hhhhhHHHHhhhhHHHH---HHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002589 329 ENLQGLLAKAT-KQADQAISVLQQNQELR---KKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
|.++...+.+. |.-+++=.+-+--++|. .++.+|+..+ -+...-....++++-+++.||-+++++-.
T Consensus 476 e~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~--~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 476 EELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL--SNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66665554421 11122211111122222 2222222221 12222234456667777778877765533
No 160
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.06 E-value=4.3 Score=52.33 Aligned_cols=111 Identities=24% Similarity=0.348 Sum_probs=66.9
Q ss_pred hHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-HHHHHHHHHHHHHhhhhhhhh
Q 002589 296 SLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-ELRKKVDKLEESLDEANIYKL 374 (904)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (904)
..+++|.++...|+.-.+|+....+-.+.-++.-..+.-+....+-++.-+..|+..+ .+....-|+++ |++++....
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~ 660 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI 660 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence 4457778888888888888777766555566666655555555555666666665443 34445566666 777776665
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 002589 375 SSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (904)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (904)
+.-.....-..+.-++|.++++++.-..|-+-.
T Consensus 661 ~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 661 SDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543222333455556666666666555554443
No 161
>PRK01156 chromosome segregation protein; Provisional
Probab=94.82 E-value=8.3 Score=49.04 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 002589 403 EIHSYVQLYQESVKEFQDTLHSLKEES 429 (904)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (904)
.+..|+..|...+++-..-+..|.++-
T Consensus 466 ~~~e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666777666666666654
No 162
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.77 E-value=18 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=15.1
Q ss_pred CCCcCCCcHHHHHHHHHHHHHH
Q 002589 522 APVAKVGGLGDVVAGLGKALQK 543 (904)
Q Consensus 522 ~P~akvGGLg~vV~~LarAL~k 543 (904)
-|+...-|-..++..||-+|+-
T Consensus 811 r~~~~LSGGE~~~~sLalrLAL 832 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLAL 832 (908)
T ss_pred cccccCCchHHHHHHHHHHHHH
Confidence 3554444558888888888874
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.76 E-value=4.1 Score=50.08 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=18.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002589 343 DQAISVLQQNQELRKKVDKLEESLDEAN 370 (904)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
.++...+.+-..++.++|.++..|..+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444456667777777788877776654
No 164
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.72 E-value=1.5 Score=54.39 Aligned_cols=93 Identities=30% Similarity=0.364 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhh----hh
Q 002589 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----SV 276 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 276 (904)
-||.++++||.||.+....|.. +...++ .+..+ -..+..||..+|.||..|.+-+..|..... ..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E-LRsqis--------~l~~~--Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE-LRSQIS--------SLTNN--ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHh--------hcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999887766532 221111 01111 127788999999999999998887765443 34
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002589 277 KDADERVVMLEMERSSLESSLKELESKL 304 (904)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (904)
...+.++....+-|..+|+.|.+-.+.-
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888888766443
No 165
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.72 E-value=1.9 Score=52.26 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=82.9
Q ss_pred hHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-----------cccchhhhhhHHHHH
Q 002589 264 NDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK-----------LSTLKVECKDLYEKV 328 (904)
Q Consensus 264 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 328 (904)
+-|..|+++..+ ++...+-|-.|+-|-.-|++.|++=|.-=.--|+.|-| ++.++....+|-++.
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~ 553 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA 553 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344445444322 33444555556656555555554322211111222222 223333344566677
Q ss_pred HHHHHHHHHHhhhh------h------hHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 002589 329 ENLQGLLAKATKQA------D------QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (904)
Q Consensus 329 ~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (904)
..+|+-+|.|.+.- . +--+..||--|||.++.+-|.++.. + -+-++-.++.||+++...|-|
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar----r--Ed~~R~Ei~~LqrRlqaaE~R 627 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR----R--EDMFRGEIEDLQRRLQAAERR 627 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665511 1 1123445556666666665555432 2 244566677777777777776
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 002589 397 LQRSDEEIHSYVQLYQESVKEFQDTLHSL 425 (904)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (904)
-+.+-.+.-+--+-...-|+..|.||++-
T Consensus 628 ~eel~q~v~~TTrPLlRQIE~lQ~tl~~~ 656 (961)
T KOG4673|consen 628 CEELIQQVPETTRPLLRQIEALQETLSKA 656 (961)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHhhh
Confidence 66655555554445556688999999873
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.62 E-value=1.5 Score=44.04 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh-hhhchHHHHH---HHHHHHHHHHHHHHhhccch
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQ---YNELMQQKMKLLEERLQRSD 401 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 401 (904)
..|+.++.-|..+...++.+-...+.+..|.++|.-||+.|+++.- .+...+|+++ -.+-+-.+|+.||.+.....
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4455555555555556666655566667888999999998887742 2333444442 23445556666666665555
Q ss_pred HHHHHHHHHHH
Q 002589 402 EEIHSYVQLYQ 412 (904)
Q Consensus 402 ~~~~~~~~~~~ 412 (904)
..+-..-..|.
T Consensus 129 ~k~eel~~k~~ 139 (143)
T PF12718_consen 129 EKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 167
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=94.61 E-value=1.2 Score=50.67 Aligned_cols=29 Identities=7% Similarity=-0.069 Sum_probs=22.5
Q ss_pred HHHHhcCeEEEcCCCCCChHHHHHHccCCccccc
Q 002589 858 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 891 (904)
Q Consensus 858 ~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~ 891 (904)
.+++.||++|--|- |.. .||.++|+||++
T Consensus 277 ~Ll~~a~~vitdSS----ggi-~EA~~lg~Pvv~ 305 (365)
T TIGR03568 277 SLLKNADAVIGNSS----SGI-IEAPSFGVPTIN 305 (365)
T ss_pred HHHHhCCEEEEcCh----hHH-HhhhhcCCCEEe
Confidence 78889999885542 333 899999999974
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.52 E-value=2.5 Score=52.78 Aligned_cols=218 Identities=22% Similarity=0.329 Sum_probs=125.3
Q ss_pred HhhhhhhHHHhhhhchhhhh--hhhhhhhhhHhhhHH----HHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCc
Q 002589 170 ALQGEINALEMRLAETDARI--RVAAQEKIHVELLED----QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNS 243 (904)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (904)
.+++++..|+.+|-+..... -.+++++..+|+-+- ++--|-+|||....+
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERae------------------------ 328 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAE------------------------ 328 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------------------
Confidence 34455555665554432222 234555555544321 234566777775443
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh-----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (904)
+|-.|+..++|-+-.|--|++-||++..+-- -..-....||..-..|..+|-.|---.+...-|.-|+..
T Consensus 329 ---sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k-- 403 (1243)
T KOG0971|consen 329 ---SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK-- 403 (1243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--
Confidence 8899999999999999999999999876531 112234567777777777766555444444444444321
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002589 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (904)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (904)
|-...--.++.|...-++...+.|+|-+.+ -||+.+||- +.=+|+-|.-+.+-|+ -|.+|||+|||-+.
T Consensus 404 -elE~k~sE~~eL~r~kE~Lsr~~d~aEs~i---adlkEQVDA--AlGAE~MV~qLtdknl-----nlEekVklLeetv~ 472 (1243)
T KOG0971|consen 404 -ELEKKNSELEELRRQKERLSRELDQAESTI---ADLKEQVDA--ALGAEEMVEQLTDKNL-----NLEEKVKLLEETVG 472 (1243)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--hhcHHHHHHHHHhhcc-----CHHHHHHHHHHHHH
Confidence 111122223333333333333445543333 367778873 2224666666666555 78899999998765
Q ss_pred c--chHHHHHHHHHHHHH-HHHHHHHHHhhHh
Q 002589 399 R--SDEEIHSYVQLYQES-VKEFQDTLHSLKE 427 (904)
Q Consensus 399 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 427 (904)
. .-++|+.++.-.+.. ..+...-||.+++
T Consensus 473 dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 473 DLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 335677666555444 5566666666644
No 169
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.50 E-value=10 Score=51.34 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=86.2
Q ss_pred cccccchhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhh
Q 002589 127 ELSTSQLDNLISMIRNA----EKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (904)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (904)
..|..+.++++.|+.-. |-|+ .|+.-+-+-++.++.+..+.+.|+-++.-|+.+|.++++.+-. .
T Consensus 1208 a~s~~e~~~i~~~v~~vNll~EsN~-~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~----------~ 1276 (1822)
T KOG4674|consen 1208 AVSDDEHKEILEKVEEVNLLRESNK-VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQE----------K 1276 (1822)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH----------H
Confidence 34667888888887644 4444 4677777778888888888888888888888888888776643 3
Q ss_pred HHHHHHHHHHhhhcccCcccchhhhcc-CCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh-h
Q 002589 203 EDQLQKLQHELTHRGVSEHSELDVFAN-QNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA-D 280 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 280 (904)
...+.+|++|...---- .-++-.. .+... .....|..++..|++|=....+-|+.++.++..++++ -
T Consensus 1277 ~ael~~l~~e~~~wK~R---~q~L~~k~k~~d~--------~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k 1345 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQR---NQDLLEKYKDSDK--------NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIK 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443221000 0000000 01000 0112333344444444444444455555555555432 3
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhh
Q 002589 281 ERVVMLEMERSSLESSLKELESK 303 (904)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~ 303 (904)
+.+-.+..|+..+...+.+++..
T Consensus 1346 ~qld~l~~e~~~lt~~~~ql~~~ 1368 (1822)
T KOG4674|consen 1346 KQLDELNNEKANLTKELEQLEDL 1368 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776654
No 170
>PF15294 Leu_zip: Leucine zipper
Probab=94.40 E-value=4.3 Score=45.05 Aligned_cols=87 Identities=33% Similarity=0.357 Sum_probs=58.4
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (904)
+..--|.+|.+.|++||..||+-+..+..+-.. .=+|++-|++.|++|.. ....+.+-..+..-..+-.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLS 193 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHhhhccccccccccchh
Confidence 444568899999999999999988877655433 34578889999999988 3333333333333334444
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 002589 323 DLYEKVENLQGLLAKATK 340 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (904)
+|-.+++.+..-+.++.+
T Consensus 194 dLE~k~a~lK~e~ek~~~ 211 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQ 211 (278)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 667777777766666543
No 171
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.21 E-value=0.84 Score=52.47 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=81.3
Q ss_pred HHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHH
Q 002589 720 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIR 799 (904)
Q Consensus 720 ~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLR 799 (904)
....++|++.++=|.......+ . |+ ..+.|-|-+-... | + ..+|.++|
T Consensus 132 ~i~~~~D~lLailPFE~~~y~k-~---g~---------~~~yVGHpl~d~i--~---------~--------~~~r~~ar 179 (381)
T COG0763 132 KIAKYVDHLLAILPFEPAFYDK-F---GL---------PCTYVGHPLADEI--P---------L--------LPDREAAR 179 (381)
T ss_pred HHHHHhhHeeeecCCCHHHHHh-c---CC---------CeEEeCChhhhhc--c---------c--------cccHHHHH
Confidence 3456799999999987776554 1 11 1233322211110 0 0 12366789
Q ss_pred HHcCCCCCCCCCcEEEEEe-cccC-ccCHHHHHHHHHHhhc--CCcEEEEEecCCc-ccc-------------------c
Q 002589 800 KHLGLSSADARKPLVGCIT-RLVP-QKGVHLIRHAIYRTLE--LGGQFILLGSSPV-PHI-------------------Q 855 (904)
Q Consensus 800 k~LGL~~~d~d~plVgfVG-RL~~-qKGIdlLIeAiarLle--~nvqLVLVGdGp~-~~l-------------------e 855 (904)
+++|++. +.+.+.+..| |-++ ..-...+.+|+..+.+ .+.+|++-=..+. +.+ +
T Consensus 180 ~~l~~~~--~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (381)
T COG0763 180 EKLGIDA--DEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGE 257 (381)
T ss_pred HHhCCCC--CCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCch
Confidence 9999984 2334445555 4333 3445667788887764 4788888554322 100 1
Q ss_pred HHHHHHhcCeEEEcCCCCCChHHHHHHccCCcccc
Q 002589 856 VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 856 ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~ 890 (904)
....|++||+.+..| |.+.+|+|-+|+|.+
T Consensus 258 ~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~V 287 (381)
T COG0763 258 KRKAFAAADAALAAS-----GTATLEAALAGTPMV 287 (381)
T ss_pred HHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEE
Confidence 128999999999876 999999998888863
No 172
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.20 E-value=18 Score=47.79 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=29.5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 002589 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (904)
.++..+......+|+++-..|...-.+-..+...-.+.+..+.++.-|....
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555566666777777766666665555555555555554444444444433
No 173
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.19 E-value=8.1 Score=47.94 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002589 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (904)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (904)
.||.+||.-|..++..|.|+.-+|.-.. -+.+-+|++|-.-++|+-..+.. +-..+..+
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~---srlh~le~eLsAk~~eIf~~~~~------------------L~nk~~~l 178 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLN---SRLHKLEDELSAKAHDIFMIGED------------------LHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHHHH------------------HhhhhhHH
Confidence 4555666666666555555544333221 12233444555555554443222 22334567
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002589 246 HSFSKELDSLKTENLSLKNDIKVLKAELN 274 (904)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (904)
.++-++|.++-+||..+++.++.+-.++.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888776555443
No 174
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.12 E-value=4.6 Score=49.31 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCCCCCCCcEE-EEEe-cccC-ccCHHHHHHHHH--HhhcCCcEEEEEecCCcc-----------c-----
Q 002589 795 KESIRKHLGLSSADARKPLV-GCIT-RLVP-QKGVHLIRHAIY--RTLELGGQFILLGSSPVP-----------H----- 853 (904)
Q Consensus 795 K~aLRk~LGL~~~d~d~plV-gfVG-RL~~-qKGIdlLIeAia--rLle~nvqLVLVGdGp~~-----------~----- 853 (904)
+.+.++++|+++ +.++| ++.| |-.+ ..-...+++|+. .+. .+.+|++....+.. .
T Consensus 400 ~~~~r~~lgl~~---~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ 475 (608)
T PRK01021 400 NLSWKEQLHLPS---DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSANPKYDHLILEVLQQEGCLHSH 475 (608)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecCchhhHHHHHHHHhhcCCCCeE
Confidence 455688899863 44554 4554 4444 444567778876 443 35788775332210 0
Q ss_pred -c-c--HHHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 854 -I-Q--VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 854 -l-e--ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
+ . ...++++||+.+..| |.+.+||+-.|+|.
T Consensus 476 ii~~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~Pm 510 (608)
T PRK01021 476 IVPSQFRYELMRECDCALAKC-----GTIVLETALNQTPT 510 (608)
T ss_pred EecCcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCE
Confidence 0 1 137899999999987 99999999888886
No 175
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.97 E-value=11 Score=50.70 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=38.9
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
....++.+.|+.+-+-.+++++..+..+...-+++.. .....+.|...+..+..+-.+
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~----lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSV----AQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 3456777888877777777777777776655555443 344567777777776666555
No 176
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.90 E-value=2.1 Score=47.99 Aligned_cols=136 Identities=22% Similarity=0.327 Sum_probs=73.4
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVE 320 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 320 (904)
+..|-+-+..|.+||..|+.....|+++-..+-+- |+.++..-++ +|+.|..-++.| ..-.-|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---------EqqLv~dcv~----QL~~An~qia~LseELa~k~Ee 228 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---------EQQLVLDCVK----QLSEANQQIASLSEELARKTEE 228 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---------HHHHHHHHHH----HhhhcchhHHHHHHHHHHHHHH
Confidence 45677889999999999999999999887755444 3333222222 233343333322 233445
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccc
Q 002589 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (904)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (904)
|..-.+.|..|.+.+....++.-+. ...|.+|+..+ .++|-+-..|+...--||+|-.-...-|+.+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~---~~EnEeL~q~L----------~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQL---AAENEELQQHL----------QASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555544443332 22344443332 2234444444444445555555555555555
Q ss_pred hHHHHH
Q 002589 401 DEEIHS 406 (904)
Q Consensus 401 ~~~~~~ 406 (904)
-+|+..
T Consensus 296 QEElk~ 301 (306)
T PF04849_consen 296 QEELKT 301 (306)
T ss_pred HHHHHH
Confidence 555544
No 177
>PRK11637 AmiB activator; Provisional
Probab=93.84 E-value=3.3 Score=48.26 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhhcc
Q 002589 203 EDQLQKLQHELTHRG 217 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (904)
++++.++-..+...|
T Consensus 123 ~~~l~~rlra~Y~~g 137 (428)
T PRK11637 123 ERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHcC
Confidence 334444444444433
No 178
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.79 E-value=0.017 Score=71.17 Aligned_cols=161 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc------chhhh-hccccchhhhhhHHHHHHHHHHH
Q 002589 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI------SQEDV-AKLSTLKVECKDLYEKVENLQGL 334 (904)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 334 (904)
||+....|+.+|.......+.+..++-|+..|+..++..++-+.. +.+|| ..+..++.++-.+-++..+++.-
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~ 365 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSE 365 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333444444444444444445555555555555555554442222 23343 46888899988888888888776
Q ss_pred HHHHhhhhhhHHHHhh-hhHHHHHHHHHHHHHHhhhhhhhhchHH----HHHHHHHHHHHHHHHHHhhccchHH------
Q 002589 335 LAKATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEK----MQQYNELMQQKMKLLEERLQRSDEE------ 403 (904)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------ 403 (904)
+....+.. .-|+ ....+..++.+++.++....--.-..++ +.+..+.|++.++.++......+..
T Consensus 366 ~~~l~~~~----~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 366 LRELEEEI----QELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 65533322 2222 2244566666666665544332222222 2345677888888877665554433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhH
Q 002589 404 ---IHSYVQLYQESVKEFQDTLHSLK 426 (904)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~~~~~~ 426 (904)
+-+.++.|.....+....|+.|.
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp --------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777776555555444433
No 179
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.79 E-value=5.4 Score=50.45 Aligned_cols=204 Identities=24% Similarity=0.273 Sum_probs=95.5
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhc----------h-hhhhhhhhhhhh
Q 002589 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAE----------T-DARIRVAAQEKI 197 (904)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~ 197 (904)
+..+|.+|-.-+.-++++|--.+|-=-+-..+++++-+...+...++..|..-+.- | .+..+.--.-+.
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777776655555555554443333333333322221111 1 111111222233
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 002589 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (904)
+..-++++.+-+.+||.+.-.++-...+ -+.+-+-+..|..++.+|..+.+|-+- |+..|+.|..--
T Consensus 756 ~l~~~~~~~~~~e~el~sel~sqLt~ee---------~e~l~kLn~eI~~l~~kl~~~~~er~~----~~~rk~~le~~l 822 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGSELFSQLTPEE---------LERLSKLNKEINKLSVKLRALREERID----IETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHhHHHHHhHHHHhhcCHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445666666677776654333222211 111123355566777777777766554 333333332211
Q ss_pred --hhhhHHHHHHhh---------hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002589 278 --DADERVVMLEME---------RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (904)
Q Consensus 278 --~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (904)
+-..|+-.|+-| |+.|+..=.+|++-...-++-+++|++|+..-...-...-+++..|++|.+....-
T Consensus 823 ~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~ 901 (1200)
T KOG0964|consen 823 NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEK 901 (1200)
T ss_pred HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222 22233333444444444445555666665554444444455555566655554443
No 180
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.70 E-value=10 Score=47.35 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002589 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (904)
Q Consensus 511 ~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP 553 (904)
+-||+.|++.- ..-|-.++..+||.+|+..|..|-+|=.
T Consensus 545 ~~kvi~vts~~----~G~GKTt~a~nLA~~lA~~g~rvLlID~ 583 (754)
T TIGR01005 545 EPEVVETQRPR----PVLGKSDIEANAAALIASGGKRALLIDA 583 (754)
T ss_pred CceEEEeecCC----CCCChhHHHHHHHHHHHhCCCeEEEEeC
Confidence 34777777631 1236678889999999999999999943
No 181
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=2.5 Score=46.57 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=103.4
Q ss_pred ccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHH
Q 002589 128 LSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQ 207 (904)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (904)
++.+.-+.+-.||.|.++=|-=+.+.--.+=.+++.+.+..+++|++++-+..+..++.+.|+- ++.++.
T Consensus 21 ~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~----------l~~eI~ 90 (265)
T COG3883 21 LTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK----------LQKEIA 90 (265)
T ss_pred cchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3444445555669999988888888888888888888888888888888888888877777663 333344
Q ss_pred HHHHHhhhcc-cCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHH
Q 002589 208 KLQHELTHRG-VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (904)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (904)
.+++-+..|. .-..+.+.++.|......-|.+.... ||+.=++.+-.=|.....|-.-|+..-.+-+..++.-..+
T Consensus 91 ~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~Sk---SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 91 ELKENIVERQELLKKRARAMQVNGTATSYIDVILNSK---SFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccC---cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333331 11122333444444333333344444 5555555555555555556555555555555556666667
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhh
Q 002589 287 EMERSSLESSLKELESKLSISQEDV 311 (904)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (904)
+++-..|.+-..|+|.++..-+.-.
T Consensus 168 ~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 168 EDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776665443333
No 182
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.66 E-value=1.5 Score=54.17 Aligned_cols=147 Identities=24% Similarity=0.362 Sum_probs=76.8
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh----------hccchhHH
Q 002589 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----------NLSLKNDI 266 (904)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 266 (904)
+.+-=||++|+|||.|++....+. +.|. +. -|.+.++.||.| -|.||+-+
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~----------~~~~-------~~---~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL 488 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESS----------SKPS-------EL---ALNEMIEKLKKEIDLEYTEAVIAMGLQERL 488 (762)
T ss_pred CCCccHHHHHHHHHHHHHhccccc----------CCCC-------Ch---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444558999999999999863221 1111 00 233445555544 36788888
Q ss_pred HHHHHHhhhhhh--------hhhHHHHHHhhhh----------hHHhhHHHHH--hhhhcchhhhhccccchhhhhh-HH
Q 002589 267 KVLKAELNSVKD--------ADERVVMLEMERS----------SLESSLKELE--SKLSISQEDVAKLSTLKVECKD-LY 325 (904)
Q Consensus 267 ~~~~~~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (904)
..|+.+++..+- .-+.+.+|..|-- .|...+.-|- ++-...-+..++-.+|+.|-+. +-
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Confidence 888888777654 2233444433321 1222222111 1111112223345556665332 12
Q ss_pred H------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 002589 326 E------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365 (904)
Q Consensus 326 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
| -.|..+++++...+ +. +...-.-+++|+.||.++..-
T Consensus 569 e~~~~~~~kek~ea~~aev~~-~g-~s~~~~~~~~lkeki~~~~~E 612 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVAS-SG-ASSGDELDDDLKEKVEKMKKE 612 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHHHH
Confidence 2 34455666666666 33 333347788889998888773
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.49 E-value=24 Score=43.36 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=82.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (904)
+|.+|+..||+.+..-..+. +.++.++++..+.+..++.|...-+...+.|+..+.....|+.-- .
T Consensus 423 pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs-----------~ 488 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS-----------A 488 (594)
T ss_pred HHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-----------H
Confidence 77899999998887665554 446777888888888888888888888888888888877775421 1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002589 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
-+..+-.......||-+.--.||.....||+.+..+...|.+.-
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12233334444556777777899999999999999999998753
No 184
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.41 E-value=9 Score=46.39 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=8.8
Q ss_pred hchHHHHHHHHHHHHHHHHH
Q 002589 374 LSSEKMQQYNELMQQKMKLL 393 (904)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~ 393 (904)
.+.+.+.+|-+.+++++..+
T Consensus 322 ~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 322 ASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 185
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.31 E-value=0.024 Score=69.96 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVL 269 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ 269 (904)
.+.+.+..|..||-.||..++..
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~e~~ 478 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQEES 478 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34556667888888887555433
No 186
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.29 E-value=7.9 Score=46.96 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=63.3
Q ss_pred ccccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhh
Q 002589 115 KESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAA 193 (904)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (904)
.+...-|...-+.|.+.++.++-.++-.||..+--.+=.+. +++.+++..+.+- ..+|+.+...|.+- +....
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~---e~~i~~i~~~l~~L---~~~e~ 132 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEI---EEDIKEILDELDEL---LESEE 132 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHH
Confidence 33444566666778889999999999999998766554433 3444454444433 33444444444333 23344
Q ss_pred hhhhhHhhhHHHHHHHHHHhhhcccCcc
Q 002589 194 QEKIHVELLEDQLQKLQHELTHRGVSEH 221 (904)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (904)
+-+..++-+.+....+|+.|...+.+=|
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G 160 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYG 160 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4556667788888889988887765533
No 187
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.24 E-value=12 Score=47.97 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002589 140 IRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (904)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (904)
+++...|....-+.+-+|-+.++-...++.-++.+|...+-++... -+++.+.++++.|..+++-.-|.
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-----------~~~e~~~~~l~~Lk~k~~W~~V~ 277 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-----------EQLEDLKENLEQLKAKMAWAWVN 277 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555544444322 23778888999999998875444
No 188
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.23 E-value=27 Score=44.85 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 002589 265 DIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ 344 (904)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (904)
.+..++..+..+..-.+++....+|...+...+...-..+...++...+++.+...+..+-++.+.|+..+..+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 354 (908)
T COG0419 275 ELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444555555555555666666666666555444444
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHHh
Q 002589 345 AISVLQQNQE-LRKKVDKLEESLD 367 (904)
Q Consensus 345 ~~~~~~~~~~-~~~~~~~~~~~~~ 367 (904)
....++.... ++.+.+.++..+.
T Consensus 355 ~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 355 LAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 4445555555544
No 189
>PRK09039 hypothetical protein; Validated
Probab=93.16 E-value=1.3 Score=50.48 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=25.9
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH
Q 002589 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK 298 (904)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (904)
|++-|..=+..+..|...+..++.++. .++.+|+.|++.+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----------~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----------AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 555555556666667777777776665 56666666666554
No 190
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.11 E-value=17 Score=44.30 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=11.7
Q ss_pred HHhhccchHHHHHHHHH
Q 002589 394 EERLQRSDEEIHSYVQL 410 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~ 410 (904)
..||+..+++|+..++.
T Consensus 509 ~nRfr~~~~~V~~~f~~ 525 (569)
T PRK04778 509 ANRYRSDNEEVAEALNE 525 (569)
T ss_pred HhccCCCCHHHHHHHHH
Confidence 46777777777776654
No 191
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=92.92 E-value=2.4 Score=48.96 Aligned_cols=28 Identities=14% Similarity=-0.147 Sum_probs=24.3
Q ss_pred HHHHhcCeEEEcCCCCCChHHHHHHccCCcccc
Q 002589 858 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 858 ~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~ 890 (904)
.+|++||++|..| |.+..|++++|+|++
T Consensus 292 ~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~I 319 (396)
T TIGR03492 292 EILHWADLGIAMA-----GTATEQAVGLGKPVI 319 (396)
T ss_pred HHHHhCCEEEECc-----CHHHHHHHHhCCCEE
Confidence 8999999999995 667799999998873
No 192
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.92 E-value=4.2 Score=49.79 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=105.7
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (904)
..+|-+=|.-|-+++.++...=..-.+.+|++.+|+.+-..+.++|.+.-.++.-.-+---.|+ -+++ |-|
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls-dtvd--------Erl 204 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS-DTVD--------ERL 204 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccH--------HHH
Confidence 4456666778889998888877788899999999998888888888776655543332222221 1221 223
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002589 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
|.-+. .--+ .|+.-..|-..++.++.-|++++-.| ++++-.++.|++.+++|+.+...-..+++..+..|
T Consensus 205 qlhlk----erma---Ale~kn~L~~e~~s~kk~l~~~~~~k---~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~ 274 (916)
T KOG0249|consen 205 QLHLK----ERMA---ALEDKNRLEQELESVKKQLEEMRHDK---DKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTY 274 (916)
T ss_pred HHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Confidence 32222 2222 24455556666677777777766544 67888999999999999988888888899999999
Q ss_pred HHHHHHHHHHH
Q 002589 412 QESVKEFQDTL 422 (904)
Q Consensus 412 ~~~~~~~~~~~ 422 (904)
++-+.+-+.++
T Consensus 275 ~e~~~~~~~~~ 285 (916)
T KOG0249|consen 275 AERRRETETTN 285 (916)
T ss_pred HHHHHhhcchh
Confidence 99988877764
No 193
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.84 E-value=7.3 Score=52.34 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCC
Q 002589 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQN 231 (904)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (904)
+-|..-+|++-++..+|+....++..-+.+|.+.+..+ .+-.-..+-|+.|.++.+..+............
T Consensus 279 eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~e------ 349 (1486)
T PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDLEQDYQAASDHLNLVQTALRQQEK------ 349 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34566667777777777777777777777777776554 232333445666666666554443210000000
Q ss_pred CCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 002589 232 EPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 311 (904)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (904)
.-.....+..+..++....++-..+++.+..+..+ +...++.+..+.++++.+...+..++.++...+..+
T Consensus 350 ------i~~l~~~LeELee~Lee~eeeLeeleeeleeleeE---leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 350 ------IERYQADLEELEERLEEQNEVVEEADEQQEENEAR---AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111122222222222222222223222222 223445555666666666666666666666666666
Q ss_pred hccccchhhh
Q 002589 312 AKLSTLKVEC 321 (904)
Q Consensus 312 ~~~~~~~~~~ 321 (904)
..+..-+.=|
T Consensus 421 ~~Le~~~~~~ 430 (1486)
T PRK04863 421 QALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHh
Confidence 6666555555
No 194
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.74 E-value=26 Score=44.88 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=57.3
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHHHhhh------hhhhhc
Q 002589 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEA------NIYKLS 375 (904)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 375 (904)
...+-++|...|+-|-|.|--|+|-|+.=+...++|- |-+-...-.+..|++.++-...++.+- .--.++
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 5556777888887777777777777765554433321 122223334445555555555555443 111111
Q ss_pred hH--HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002589 376 SE--KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (904)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
.. -.++++++. +++|-+-.+++.++-++.+......
T Consensus 475 ~~~Q~~~et~el~-~~iknlnk~L~~r~~elsrl~a~~~ 512 (1195)
T KOG4643|consen 475 LQDQLEAETEELL-NQIKNLNKSLNNRDLELSRLHALKN 512 (1195)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123344443 3478888888888877766544443
No 195
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.74 E-value=1.8 Score=50.68 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=78.5
Q ss_pred cCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 002589 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (904)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (904)
.+...+|-+..+.+.||++|.-|-+-|+.....=...+.++|+-..|...---++++.+.|++|. |+-.-+++.|+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~---~~~~g~l~kl~~ 337 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS---QEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 44556778888888999999888888887777667778888888888887778889999998874 555667777888
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh
Q 002589 320 ECKDLYEKVENLQGLLAKATKQADQ 344 (904)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (904)
||.---+.++.||+-.|...+|..+
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8876677777777777776666654
No 196
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.66 E-value=21 Score=46.70 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 002589 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (904)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (904)
.-++.+...|+-|++.+++.+..+|..+..+ ..-.+|..++.|
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~-~~~~~L~~~q~d 211 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSE 211 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 3456677889999999999999999888744 344455555554
No 197
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.63 E-value=0.034 Score=68.62 Aligned_cols=182 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (904)
.|.+..++..|.+|+..|......++..++... ...+....+.++.+.|.+.++.|...+....+ .+..++.+|..
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~---~~~d~~~~~e~ 271 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE---QRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345666677777777777777777777766544 22223333445555555555555554432111 11112222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhh----------HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 002589 324 LYEKVENLQGLLAKATKQADQAISVLQQN----------QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (904)
+-..+..|+.-.+..+..|+.|-..=++- .-+...|.+.+.-|++..-||-.-..|+.-|..+.++...|
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222 22333444445556677777777777777887888888889
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 002589 394 EERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (904)
|+.+..+. ...+++..|...|.+.+.-++......+
T Consensus 352 Eeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~~ 387 (713)
T PF05622_consen 352 EEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRAD 387 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998875 4678899999999988887776544433
No 198
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.39 E-value=13 Score=40.03 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002589 353 QELRKKVDKLEESLDEA 369 (904)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (904)
..+..++..|++-|.+|
T Consensus 172 ~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555555
No 199
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.13 E-value=1.1 Score=55.74 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=58.1
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-----------hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----h
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD-----------ADERVVMLEMERSSLESSLKELESKLSIS----Q 308 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 308 (904)
.+..+..++...+.-+..+-..++.++.....-.. -...+..|++|...|+..+..||.++... .
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~ 541 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGE 541 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34556667777777666777777777777654322 23467778888888888888888887641 1
Q ss_pred hhhhccccc--hhhhhhHHH--HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhh-hhh-hhchHHHHHH
Q 002589 309 EDVAKLSTL--KVECKDLYE--KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA-NIY-KLSSEKMQQY 382 (904)
Q Consensus 309 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 382 (904)
-+.++..-| +.-=..-++ |-..|.. .=..|++|+.++..|++--... .+. .-+..-.++-
T Consensus 542 ~~~~~trVL~lr~NP~~~~~~~k~~~l~~--------------L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e 607 (722)
T PF05557_consen 542 FNPSKTRVLHLRDNPTSKAEQIKKSTLEA--------------LQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKE 607 (722)
T ss_dssp -BTTTEEEEEESS-HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHTTTT----------------HH
T ss_pred cCCCCceeeeeCCCcHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHH
Confidence 122222211 111111122 2222222 2235777887777665432211 111 1111212222
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Q 002589 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTL 422 (904)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (904)
...|+.++..++- .+.-+-+.|...+.+|.++.
T Consensus 608 ~~~l~~~~~~~ek-------r~~RLkevf~~ks~eFr~av 640 (722)
T PF05557_consen 608 IAELKAELASAEK-------RNQRLKEVFKAKSQEFREAV 640 (722)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3344555554444 44456667778888887743
No 200
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.06 E-value=33 Score=44.28 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccc
Q 002589 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (904)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (904)
.++++-..|-+..+++|+-|||||+-..-.++ +.- -+++.++-+++...+++..-+ |-
T Consensus 669 ~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~--~~k-~~l~~~~~El~~~~~~i~~~~---------------p~---- 726 (1141)
T KOG0018|consen 669 KEIQKRRKEVSSVESKIHGLEMRLKYSKLDLE--QLK-RSLEQNELELQRTESEIDEFG---------------PE---- 726 (1141)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHhhC---------------ch----
Confidence 34444445677889999999999986644333 332 666777777777766665221 11
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh----------------hhhH--HHHHHhhhhhHHhhHHHH
Q 002589 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------------ADER--VVMLEMERSSLESSLKEL 300 (904)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~ 300 (904)
+..+-.+++.. ...+..|+.+.+.|.+ -+|+ -....++|..++..+.-|
T Consensus 727 ------i~~i~r~l~~~-------e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 727 ------ISEIKRKLQNR-------EGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred ------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333 3334444444443322 2222 233445666677777777
Q ss_pred HhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHH
Q 002589 301 ESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (904)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (904)
|.+|.--+. +..+-...-|-..|++++.-+++..++.+-+...+... +.|+.-+ |--+++++
T Consensus 794 ~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-----------~~~e~k~--k~~~~~~~ 855 (1141)
T KOG0018|consen 794 ENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-----------EELEKKN--KSKFEKKE 855 (1141)
T ss_pred hhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-----------HHHHHHH--HHHHHHHH
Confidence 777765443 44444444777889999998888777666665554444 3333311 33334433
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (904)
..-.-....+..+-..++.-+.+|.+.=..-..-..|-|+.|.+
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ 899 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSK 899 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333344444555555666666665333333333444555555
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.05 E-value=22 Score=43.76 Aligned_cols=214 Identities=22% Similarity=0.327 Sum_probs=96.4
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccc-
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLS- 315 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~- 315 (904)
.|..+.+|-|.||.|--+||+.+..---. ++.++-||-|..|-.|-..| ..-++.|-.|...+..=+.|++
T Consensus 417 Kvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge 495 (961)
T KOG4673|consen 417 KVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGE 495 (961)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 34556667777777766666655431111 46778888887665443322 2223333333332222122221
Q ss_pred -------------cc---hhh-hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh-------hhh
Q 002589 316 -------------TL---KVE-CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE-------ANI 371 (904)
Q Consensus 316 -------------~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 371 (904)
.. |-| -|.+.|-|+.+++.+.+ |-+-..-.=..-.+|+.+.-.+++++.+ +|.
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r---q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR---QKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 11 111 12345666677776655 2222211111112333333333333333 333
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHH
Q 002589 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL 451 (904)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 451 (904)
-| -+..++-..-+-|+|.-|-.-|+...+..---=+-+.+.|.+.|.-|. ..+.+ .++.++.+| +-..-||.
T Consensus 573 lk--Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlq----aaE~R-~eel~q~v~-~TTrPLlR 644 (961)
T KOG4673|consen 573 LK--QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQ----AAERR-CEELIQQVP-ETTRPLLR 644 (961)
T ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHhhcc-ccccHHHH
Confidence 33 112222223333444444444444333322222333455555555544 23333 455566665 33345777
Q ss_pred HhhhhhhhcccChHHHHHHHHHHHhh
Q 002589 452 IIDGWLLEKKLSTSEAKLLREMVWKR 477 (904)
Q Consensus 452 ~~d~~~~~~~~~~~~a~~l~~~~~~~ 477 (904)
-|..|. ++-.=+...|+|
T Consensus 645 QIE~lQ--------~tl~~~~tawer 662 (961)
T KOG4673|consen 645 QIEALQ--------ETLSKAATAWER 662 (961)
T ss_pred HHHHHH--------HHHhhhhhHHHH
Confidence 788884 333445567888
No 202
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=4.8 Score=48.37 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=83.6
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHh-------hHHHHHhhhhcchhhhhcccc
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLES-------SLKELESKLSISQEDVAKLST 316 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 316 (904)
..|+...+++.|++.|..|-+-|+ ++...+.++..|++.++.|.. .+..|+++ .|.=--+|.-
T Consensus 229 ~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k---~~~~~~~l~~ 298 (581)
T KOG0995|consen 229 YFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK---KQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 345556666666666665544444 555556666666666665443 33333333 3333345555
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 002589 317 LKVECKDLYEKVENLQGLLAKATKQADQ----AISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (904)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (904)
++.||..-=+..|.||..-+...+|.+. +.-|=+.|++.. +|+.-| .+|+.--|.+++++..
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~----~l~r~l----------~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN----KLKREL----------NKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHh
Confidence 6666666666666666665555555542 222222333221 122222 2333344667777777
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002589 393 LEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (904)
++.-.+..-+++.+.+..|.+.+.+-.-.
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766655544
No 203
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.94 E-value=19 Score=46.07 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=57.3
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (904)
..+..|+..++++..|++...-++...+.-|. ...+-+.++++.-+.++.+|++=|+.+...+++..++..-..+--
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s 370 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDS 370 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33458899999999999988888887777665 345556677777777777777777777777666666554444333
Q ss_pred hHHHHHH
Q 002589 323 DLYEKVE 329 (904)
Q Consensus 323 ~~~~~~~ 329 (904)
.++++.+
T Consensus 371 ~~~e~~e 377 (1174)
T KOG0933|consen 371 KLLEKAE 377 (1174)
T ss_pred HHHHHHH
Confidence 4444443
No 204
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.64 E-value=6.8 Score=44.55 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCC
Q 002589 406 SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDM 441 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (904)
..+...+..+.+.+..++.+...-+++..-.|+++.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 334445556666666676666666665555555554
No 205
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=91.53 E-value=3 Score=48.10 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=57.6
Q ss_pred HHHHHHHcCCCCCCCCCcEE-EEEe-cccC-ccCHHHHHHHHHHhhc--CCcEEEEEecCCcc-c-cc------------
Q 002589 795 KESIRKHLGLSSADARKPLV-GCIT-RLVP-QKGVHLIRHAIYRTLE--LGGQFILLGSSPVP-H-IQ------------ 855 (904)
Q Consensus 795 K~aLRk~LGL~~~d~d~plV-gfVG-RL~~-qKGIdlLIeAiarLle--~nvqLVLVGdGp~~-~-le------------ 855 (904)
+...++.+ ++. +.++| ++.| |-.+ ..-+..+++|+..+.+ .+++|++....... . +.
T Consensus 172 ~~~~~~~~-l~~---~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ 247 (373)
T PF02684_consen 172 RAEAREKL-LDP---DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSI 247 (373)
T ss_pred HHHHHHhc-CCC---CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeE
Confidence 34455666 663 44554 4444 5444 3344777899988876 37888887653211 1 10
Q ss_pred ------HHHHHHhcCeEEEcCCCCCChHHHHHHccCCccc
Q 002589 856 ------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 889 (904)
Q Consensus 856 ------ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V 889 (904)
...+|++||+.++.| |.+.+||+-+|+|.
T Consensus 248 ~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~ 282 (373)
T PF02684_consen 248 VIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPM 282 (373)
T ss_pred EEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCE
Confidence 118999999999987 99999999888886
No 206
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=46 Score=41.52 Aligned_cols=273 Identities=21% Similarity=0.223 Sum_probs=165.2
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHH
Q 002589 135 NLISMIRN-AEKNILLLNEARVQALEDLHKILQEKEALQGEINAL--EMRLAETDARIRVAAQEKIHVELLEDQLQKLQH 211 (904)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (904)
+++++.++ +++=..++.+.+..--. -..|+..|.+++...+.+ .++.+.-+.+.++-...+.-++-+..++.++-.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~e~~k-~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k 414 (698)
T KOG0978|consen 336 KLRSKLLESAKKLKILLREKDRESQK-ERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDK 414 (698)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778777 66666666655555433 345667777777653322 233444445554443333333334444443322
Q ss_pred HhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHH-----------hhhhhhhh
Q 002589 212 ELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE-----------LNSVKDAD 280 (904)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 280 (904)
+-... ..--.+ .+....-..+-+++++|..+-+++.-|-..++...++ +.++.+-|
T Consensus 415 ~e~~e-------~~k~~~------d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekd 481 (698)
T KOG0978|consen 415 EERSE-------IRKQAL------DDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKD 481 (698)
T ss_pred HHHHH-------HHhhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 000000 0000111233455666666555555443333333332 23456667
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 002589 281 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 360 (904)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (904)
..-++|-.||.......+.|.....+..+.+..+.+-.. .+-.++-+|+..+...|..+..-+ .++....+
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~---~~~~~i~~leeq~~~lt~~~~~l~------~el~~~~~ 552 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD---KLELKIGKLEEQERGLTSNESKLI------KELTTLTQ 552 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHhhhhhH------HHHHHHHH
Confidence 777888888888888999999999888888887766443 577888889988888887765443 45666777
Q ss_pred HHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHH--HH-HHHHHHHHHHHHHHHhhHhhhh
Q 002589 361 KLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS--YV-QLYQESVKEFQDTLHSLKEESK 430 (904)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 430 (904)
++|..=..+.=++-+.+.+|...+..+.+++.++..++.+..++-- +- +.-++.++.+...|..++.++.
T Consensus 553 ~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 553 SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7888778888888889999999999999999999999887766543 22 2223445556665555554443
No 207
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.34 E-value=9.4 Score=48.99 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=24.3
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (904)
...++.|..|++..-.+|+...+.+...++.-|.+
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~ 767 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHI 767 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888887778877777776666655544
No 208
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.28 E-value=23 Score=42.90 Aligned_cols=174 Identities=29% Similarity=0.308 Sum_probs=111.6
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcc
Q 002589 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (904)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (904)
+.||++|| -|--|||--= -+|--||.|=-+|.++|--.....+.+.. +. ...++..
T Consensus 38 ~rEK~El~----~LNDRLA~YI----------ekVR~LEaqN~~L~~di~~lr~~~~~~ts-----~i-----k~~ye~E 93 (546)
T KOG0977|consen 38 EREKKELQ----ELNDRLAVYI----------EKVRFLEAQNRKLEHDINLLRGVVGRETS-----GI-----KAKYEAE 93 (546)
T ss_pred HHHHHHHH----HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhccCCCc-----ch-----hHHhhhh
Confidence 45776665 3556665431 24557788877777776554333222211 00 0022333
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVE 320 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 320 (904)
+-.....++....+-..+..+|..|+.++.+. ..++...+|+|..-+..+++.+..+...++-..-+ ..+..|
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el---r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKEL---RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33445556666667777888888888776554 45666777788887777777777777776655433 345566
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002589 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (904)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (904)
-+.|-.....|..-|+.+.++.|++++. -.|++.+|+.|.+.|+-
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etll---r~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLL---RVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 6777778888888999999999998543 35788888888887753
No 209
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=91.26 E-value=23 Score=44.28 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP 553 (904)
++-||+.|++.. | .-|-..+..+||.+|+..|..|-+|=.
T Consensus 529 ~~~kvI~vtS~~-~---g~GKTtva~nLA~~la~~G~rVLlID~ 568 (726)
T PRK09841 529 TENNILMITGAT-P---DSGKTFVSSTLAAVIAQSDQKVLFIDA 568 (726)
T ss_pred CCCeEEEEecCC-C---CCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 345788888732 2 246678899999999999999999943
No 210
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=91.21 E-value=0.55 Score=43.68 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCC
Q 002589 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (904)
Q Consensus 638 g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl 679 (904)
.++.||||.|...+.+..-.++-+ ...|.++|+|=|.+
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~hA----~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILHA----RTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHHH----HhCCCcEEeecccc
Confidence 579999999987665543222221 24689999999976
No 211
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.10 E-value=27 Score=39.30 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=36.1
Q ss_pred HHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhc
Q 002589 364 ESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 432 (904)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (904)
.....-+-...+.-.+|..|-+|+|++. +-....+..=... -..=..|++++.+|..+++|.
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLd---dA~~K~~~kek~V----iniQ~~f~d~~~~L~ae~ekq 272 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLD---DAHNKADNKEKTV----INIQDQFQDIVKKLQAESEKQ 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455667778888888754 3333333211111 111245999999999999995
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.81 E-value=24 Score=47.32 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.6
Q ss_pred CcEEEEEec
Q 002589 840 GGQFILLGS 848 (904)
Q Consensus 840 nvqLVLVGd 848 (904)
+.++||+..
T Consensus 1306 ~~~~i~~s~ 1314 (1353)
T TIGR02680 1306 DLDFVMTSE 1314 (1353)
T ss_pred CCCEEEEcc
Confidence 566666654
No 213
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.77 E-value=7.6 Score=40.99 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=86.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (904)
.|-..+..+-+.|.-|.++|+.|+.++-...-.-++-..++.|-..|...++.||..-....+-- .-++-|-..|-.
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~---rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA---RQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45566777778888888888888888888888888888888898889999988887654433322 233444445556
Q ss_pred HHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHHHHHHHHHHHHh-----------hhhhhhhchHHHHHHHHHHHH
Q 002589 327 KVENLQGLLAK-------ATKQADQAISVLQQNQELRKKVDKLEESLD-----------EANIYKLSSEKMQQYNELMQQ 388 (904)
Q Consensus 327 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 388 (904)
++++||.--.+ ..++..+ .-..+.+|+.+|=.-|..+- ...-++...+......+.|+.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e---L~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~ 179 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE---LATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRL 179 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666543333 2222222 22466777777733332221 111222333344445555566
Q ss_pred HHHHHHHhh
Q 002589 389 KMKLLEERL 397 (904)
Q Consensus 389 ~~~~~~~~~ 397 (904)
++-.||+.+
T Consensus 180 e~s~LEeql 188 (193)
T PF14662_consen 180 EKSRLEEQL 188 (193)
T ss_pred HHHHHHHHH
Confidence 666666554
No 214
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=90.69 E-value=0.55 Score=58.57 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhh-------------hh-------hHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc--hHHHHHH
Q 002589 325 YEKVENLQGLLAKATKQ-------------AD-------QAISVLQQNQELRKKVDKLEESLDEANIYKLS--SEKMQQY 382 (904)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 382 (904)
-++.+.++..|.++++. .| ....+.-+..+.++||+++=.++.- +.+.+. ....++.
T Consensus 152 ~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f-~~~~~p~~~~~p~e~ 230 (759)
T PF01496_consen 152 REKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGF-ERYDLPEDEGTPEEA 230 (759)
T ss_dssp HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT---B----GGGGG-HHH
T ss_pred hhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCc-eecCCCCccccHHHH
Confidence 36788889999888776 11 1223333445567777777666532 333322 2345667
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002589 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (904)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (904)
-..++++++.+++.++...+++.+.++.+...+.+-...+.+.+.
T Consensus 231 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 275 (759)
T PF01496_consen 231 IKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKE 275 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999888887777776665444
No 215
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.69 E-value=14 Score=43.90 Aligned_cols=157 Identities=25% Similarity=0.271 Sum_probs=99.3
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHH----Hhh---hhcchhhhhcccc-
Q 002589 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKEL----ESK---LSISQEDVAKLST- 316 (904)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~- 316 (904)
-+|-+-|..+++||+.|+...--+|++-.-+.+-+..++ +++||-.-++..++-+ ++| ++.-|+..+||-.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999998877777777777 7788766655554433 444 5566777766544
Q ss_pred ---chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh----------hhhhchHHHHHHH
Q 002589 317 ---LKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN----------IYKLSSEKMQQYN 383 (904)
Q Consensus 317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 383 (904)
++-+-+.+--.+|.|..+|.-+...-++ .-....++++|--.+.+-|.||- .-+.+++..+.+-
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q---l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ---LTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 3434344444445555555433322222 23456788888888777777763 2244444444443
Q ss_pred ------HHHHHHHHHHHHhhccchHHHH
Q 002589 384 ------ELMQQKMKLLEERLQRSDEEIH 405 (904)
Q Consensus 384 ------~~~~~~~~~~~~~~~~~~~~~~ 405 (904)
.+.+||+.+.+..=..-|+++-
T Consensus 319 ~~fp~~~~aae~i~lt~r~~~qldee~s 346 (596)
T KOG4360|consen 319 HHFPQLSLAAEKIELTMRKNLQLDEEAS 346 (596)
T ss_pred hhCChhhHHHHHHHHhhhhhhccccccc
Confidence 5677788877766555555543
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.67 E-value=46 Score=40.21 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=16.5
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhh
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (904)
|...++|-..|+..+++|+.+|..++.--
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el 325 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEEL 325 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666665555433
No 217
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=10 Score=45.40 Aligned_cols=130 Identities=25% Similarity=0.329 Sum_probs=97.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (904)
.-.+|+++-+.||--||+-|..|..+ .++.++.+..|..+-++|.|+.-.+.|+| ++|.+--..=-|
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~---l~eke~sl~dlkehassLas~glk~ds~L----------k~leIalEqkkE 394 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAE---LTEKESSLIDLKEHASSLASAGLKRDSKL----------KSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHHHHHHHHH
Confidence 45788999999999999999999984 46778889999999999988887776654 444442112246
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 002589 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (904)
+.-.+.+.|-+|.+..|.|- +--.-.|+++.|+ .+++-|+--|-+.|..++.+-+=.|..|.-
T Consensus 395 ec~kme~qLkkAh~~~ddar-~~pe~~d~i~~le------~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDAR-MNPEFADQIKQLE------KEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhh-cChhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67778899999999999984 3344455555555 377888888888888888877766666543
No 218
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.61 E-value=45 Score=43.49 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhHhh--hHHHHHHHHHHhhhc
Q 002589 187 ARIRVAAQEKIHVEL--LEDQLQKLQHELTHR 216 (904)
Q Consensus 187 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (904)
..|+--|++-...+| --+|++.|..++..+
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345555555554444 357888888887765
No 219
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.61 E-value=2.7 Score=49.58 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (904)
.++..|+..++....+..+....-.+...|++.++..++
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~ 369 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKS 369 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333444455555544443
No 220
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=90.59 E-value=2.6 Score=46.41 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=36.6
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
|+|++|+.-.+|+ ..||+..-+.+|.++|-+.-..|..|++.
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 7999999999999 48999999999999998866677777765
No 221
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.57 E-value=10 Score=45.54 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHhh-hhhhhhc-------hHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002589 360 DKLEESLDE-ANIYKLS-------SEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (904)
Q Consensus 360 ~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
+++-++|++ .....++ .+.+++..+.+++.+.+|+..++..-.|+...-......++.|+.
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~ 320 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFRE 320 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666766 3333444 366777777777777777777754444443333333333444433
No 222
>PRK11281 hypothetical protein; Provisional
Probab=90.52 E-value=38 Score=44.55 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=40.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH------HHHHHHHHHHHHh
Q 002589 371 IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY------QESVKEFQDTLHS 424 (904)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 424 (904)
..+++++.-+.+.++++.+-++|++=.+..|+++.-.+.+. ..-+++.+++|+.
T Consensus 394 ~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~ 453 (1113)
T PRK11281 394 KSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453 (1113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788999999999999999999999998777663 2225666666654
No 223
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.52 E-value=13 Score=45.08 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=95.5
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhH-HHHHhhhhcchhhhhccccchh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSL-KELESKLSISQEDVAKLSTLKV 319 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (904)
+-.+-.|+..||.||--|.++|..+|.+|+.- -+...++-.|.+|...+...- .+++.....++-|.. .....
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~ 241 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence 44678899999999999999999999877642 355667778888888776332 345555555666664 22222
Q ss_pred hhhh-HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHH---HHHHHHHHHHHHHH
Q 002589 320 ECKD-LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQ---QYNELMQQKMKLLE 394 (904)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 394 (904)
+.++ |..-+..+++.-+.--.+..+.+- .-.++||+++..+-+.++.. ...-|.+. .-..-|+.|+--||
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE-----~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE 316 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIE-----SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc
Confidence 2221 233333333333332112111111 12678899988765555432 22222222 22233555666555
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
.+-......|.-+=-.-...-.-|..+|+....+-.+
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~ 353 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAK 353 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 5544444444332111123345566666654444444
No 224
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.36 E-value=15 Score=40.23 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchh
Q 002589 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETD 186 (904)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (904)
+.-.++--|.--+--.-++|+++..|++++-..+-.+++.+.+-+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le 58 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLE 58 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333445555555555555555555555544443
No 225
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.27 E-value=24 Score=43.35 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=6.5
Q ss_pred hhcCcchhhhHH
Q 002589 476 KRNGRIRDAYME 487 (904)
Q Consensus 476 ~~~~~~~~~~~~ 487 (904)
++|.....||.-
T Consensus 544 KkDe~~rkaYK~ 555 (594)
T PF05667_consen 544 KKDEAARKAYKL 555 (594)
T ss_pred hcCHHHHHHHHH
Confidence 355555556654
No 226
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.19 E-value=11 Score=41.55 Aligned_cols=149 Identities=22% Similarity=0.340 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH---HHHHHHHHHHHHHHh
Q 002589 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL---YEKVENLQGLLAKAT 339 (904)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 339 (904)
+..++.+|++|.+.++. .+++-+.|+..+.+|++++..+|++++-|+|-+. +.. -=++.+|...|+.++
T Consensus 62 ~~~l~~ak~eLqe~eek------~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEK------EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred hHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 45677777777766654 4577888999999999999999999999999876 222 224566666666543
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchH---HHHHHH--------HHHHHHHHHHHHhhccchHHHHHHH
Q 002589 340 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE---KMQQYN--------ELMQQKMKLLEERLQRSDEEIHSYV 408 (904)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (904)
.+ .++..|.|++.... ...+++.. +-++.+ .-++.- +-.+. ..+.-|...+
T Consensus 134 ~~-------------qqdEldel~e~~~~-el~~l~~~~q~k~~~il~~~~~k~~~~~~~~---l~~~~-~~N~~m~kei 195 (258)
T PF15397_consen 134 DS-------------QQDELDELNEMRQM-ELASLSRKIQEKKEEILSSAAEKTQSPMQPA---LLQRT-LENQVMQKEI 195 (258)
T ss_pred HH-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHH---HHHHH-HHHHHHHHHH
Confidence 32 12223333322211 01111110 000000 011111 11111 3456677777
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhcccCCCCC
Q 002589 409 QLYQESVKEFQDTLHSLKEESKKRAVHEPVD 439 (904)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (904)
..+.+.|++|..-+..|+.+-+. +...+.
T Consensus 196 ~~~re~i~el~e~I~~L~~eV~~--L~~~~~ 224 (258)
T PF15397_consen 196 VQFREEIDELEEEIPQLRAEVEQ--LQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 88888888888888888777766 444444
No 227
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.11 E-value=47 Score=42.15 Aligned_cols=153 Identities=26% Similarity=0.411 Sum_probs=68.3
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 327 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (904)
|.....++-.|..|+++|..+|..-. .-...+-.++.|.+.+..-|.+|-..+-+....|. .|..|
T Consensus 331 l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~----------~Lq~k 400 (775)
T PF10174_consen 331 LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN----------VLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 33333334444444444444443321 12233444444444444444444443333333222 34555
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 002589 328 VENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (904)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (904)
+|+|+..|..=.++.+.+-.-|..+.| .-+.|.+-+.|++|...+ +.++.++. +--..+..+-...
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d-~~~~~~~~~~lEea~~ek----------er~~e~l~---e~r~~~e~e~~Ee 466 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQAD-SSNEDEALETLEEALREK----------ERLQERLE---EQRERAEKERQEE 466 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHH
Confidence 666666664433344433333332111 123344445555555433 23333332 2223344555566
Q ss_pred HHHHHHHHHHHHHHHHhhHhh
Q 002589 408 VQLYQESVKEFQDTLHSLKEE 428 (904)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~ 428 (904)
+..|+..+++...+++.|-++
T Consensus 467 le~~~~e~~~lk~~~~~LQ~e 487 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKE 487 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 677777777777777766544
No 228
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.62 E-value=31 Score=40.60 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHh
Q 002589 138 SMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHEL 213 (904)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (904)
.-+.+++++|--+|...-..=+...+..++...+..+|+.++..|.+|...++...+ ...-++..|++|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~---~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK---QIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 446777888877777666555556666666666666666666666666555544333 2334455566665544
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.62 E-value=62 Score=42.66 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=39.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH------HHHHHHHHHHHh
Q 002589 371 IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ------ESVKEFQDTLHS 424 (904)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 424 (904)
-.+++++.-+.+.++++.+-++|++=.+..|..|...+++.. +.+++.+++|+.
T Consensus 370 ~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~ 429 (1109)
T PRK10929 370 GQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHR 429 (1109)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677767778889999999999999999999987766532 224555555544
No 230
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.62 E-value=57 Score=39.67 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=15.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (904)
.+++..+..|+-.|+.++..++.+++.
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665555543
No 231
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=89.55 E-value=30 Score=36.83 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=56.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHHHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHH
Q 002589 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDT 421 (904)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 421 (904)
.+++..|.+.+.++++.+.++..... +-..+|+++.+.- +++++...+.++......|..-+..+... +.+|.++
T Consensus 112 ~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~ 191 (216)
T cd07627 112 KLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNS 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777766665432 2235666665544 56788888888888888888888887655 8888888
Q ss_pred HHhhHh
Q 002589 422 LHSLKE 427 (904)
Q Consensus 422 ~~~~~~ 427 (904)
|...-+
T Consensus 192 l~~~~e 197 (216)
T cd07627 192 VEIYLE 197 (216)
T ss_pred HHHHHH
Confidence 877443
No 232
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=28 Score=41.92 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=67.6
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcc
Q 002589 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (904)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (904)
..+-|.|+.+|.+|-..|.+|-..+--||+ .+.++||+. +
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAe--yGL~lLeeK-~------------------------------------- 46 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAE--YGLELLEEK-E------------------------------------- 46 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-H-------------------------------------
Confidence 456677888888888888887665555555 455666432 1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (904)
.|-+.|+.|..|--+.+..|+.+|+.+-...-.-.++. .++.|-++|+.|-..=+. =+.++-.|+-|-|
T Consensus 47 --~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~-------yl~kI~eleneLK 117 (772)
T KOG0999|consen 47 --DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEY-------YLQKILELENELK 117 (772)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence 22333444444444444445555555544444444433 346666666544322111 2233444555555
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 002589 323 DLYEKVENLQGLLAKATK 340 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (904)
.+-..+++.|.=.++.++
T Consensus 118 q~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 565666666655555443
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.36 E-value=45 Score=38.06 Aligned_cols=197 Identities=16% Similarity=0.138 Sum_probs=97.9
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (904)
-++|+.-+...|++|..|+.+++.|+++|.+...--+-++ ..+++........ .+...+
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR----------~~la~~r~~~~~~---~~~~~~-------- 125 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLR----------EKLARQRVGDEGI---GARHFP-------- 125 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----------HHHHhhhhhhccc---cccccc--------
Confidence 3588999999999999999999999999887765544443 3333333222110 000111
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-----------HHHhhhhHHHHHHHHHHHHHHhhhhhh----hhchHHHHHHHHHHHHH
Q 002589 325 YEKVENLQGLLAKATKQADQA-----------ISVLQQNQELRKKVDKLEESLDEANIY----KLSSEKMQQYNELMQQK 389 (904)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 389 (904)
+.=|.|=..|.+++.|..+- --+...-...+.|++.|-.-|.-.--. =..-+.+--.|..|+++
T Consensus 126 -~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~er 204 (319)
T PF09789_consen 126 -HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKER 204 (319)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 22223333333333333322 012223334455555554443221000 01133444467777888
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh-hHhhhhhcc---cCCCCCCCChHHHHHHHHHhhhhhhhcccChH
Q 002589 390 MKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS-LKEESKKRA---VHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTS 465 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~ 465 (904)
++.+++-. +.+.+-|.+| ..+|+. -++..-+-. -...+.=|++.=-.++|.. ...-.+--.++.
T Consensus 205 l~q~qeE~----~l~k~~i~KY-------K~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~-~~~~~~~~~~~~ 272 (319)
T PF09789_consen 205 LKQLQEEK----ELLKQTINKY-------KSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLES-ESNGCSLPASPQ 272 (319)
T ss_pred HHHHHHHH----HHHHHHHHHH-------HHHHHhhccccccccCCCCCCcccccccHHHHHHHHhc-ccccCCCCCCcc
Confidence 87776643 2344444445 445552 111111100 1223344776666677752 221112245677
Q ss_pred HHHHHHHHHH
Q 002589 466 EAKLLREMVW 475 (904)
Q Consensus 466 ~a~~l~~~~~ 475 (904)
-+++|+.++-
T Consensus 273 s~sdLksl~~ 282 (319)
T PF09789_consen 273 SISDLKSLAT 282 (319)
T ss_pred hHHHHHHHHH
Confidence 7888888663
No 234
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=26 Score=43.61 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEAL 171 (904)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (904)
++=+..|.+++.|+-. |.+|+.|-.+++-.+++..++
T Consensus 376 ~~~~le~~k~~~ke~~--~~~~~ka~~E~e~l~q~l~~~ 412 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQR--DKLQVKARAETESLLQRLKAL 412 (698)
T ss_pred HHHHHHHHhCCCHHHH--hHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777644 344444444444444444443
No 235
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.18 E-value=8.2 Score=38.07 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=71.6
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 002589 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (904)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (904)
+++.|+.|...++..+.....++....+ .++........+=...|..+.-=-+|+-.|..++-++..+-..+..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333222 2344444455555566666777777788888888877777777777
Q ss_pred HHHHHHHHhhhhhhHHHH-hhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 002589 331 LQGLLAKATKQADQAISV-LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (904)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (904)
|+.-.+.|....+++-.. -.+-..|.+.++.++. +.+.|..-|.+|++++..+
T Consensus 78 l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~----------r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWEEQKEQLEKELSELEQ----------RIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 666666655554443221 2233344444444443 4566777888888887653
No 236
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.90 E-value=18 Score=45.04 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=25.2
Q ss_pred hhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc
Q 002589 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (904)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (904)
||.++..|...++++. .++.+.--.+|.+-+|||++|+-++
T Consensus 434 Le~elekLk~eilKAk-----~s~~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 434 LEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred HHHHHHHHHHHHHhcc-----cccCCCCChHHHHHHHHHHHHHHHH
Confidence 5555555555555551 1233444456778888888888775
No 237
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.86 E-value=9.7 Score=43.35 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=11.1
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (904)
++.++.+-..+++.++.+++++....+
T Consensus 153 i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 153 IKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444333
No 238
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.60 E-value=12 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=12.6
Q ss_pred hhhhhccchhHHHHHHHHhhh
Q 002589 255 LKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~ 275 (904)
.-+.|..|+...+.+|.+|.+
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444677777777766654
No 239
>PRK11281 hypothetical protein; Provisional
Probab=88.55 E-value=23 Score=46.46 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002589 407 YVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (904)
-+++++=.+.+.++.|.+
T Consensus 364 dlrl~~f~~~q~~~~l~~ 381 (1113)
T PRK11281 364 DLRLEQFEINQQRDALFQ 381 (1113)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 355556566666665544
No 240
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.40 E-value=26 Score=41.40 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=13.2
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 280 DERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
.+.+...+-++..+++.++.|+.++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444455555555555555443
No 241
>PLN02939 transferase, transferring glycosyl groups
Probab=88.38 E-value=25 Score=45.33 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=80.4
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002589 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (904)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (904)
+-+-.|..|...|...+..|..++....+.--.+..|+-|+ +=..+..|+.-|..+-.-+.+--.+-..-.+|.+||+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34456778888899999999999887777666677777775 4444444444443332222222222233357999999
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHH
Q 002589 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEE 395 (904)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (904)
.|++.|..|.----..- --.-+|.||..+|+.|.+.. ..|+.|.++-|+-++.+-+
T Consensus 335 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 390 (977)
T PLN02939 335 KLEASLKEANVSKFSSY----KVELLQQKLKLLEERLQASD------HEIHSYIQLYQESIKEFQD 390 (977)
T ss_pred HHHHHHHHhhHhhhhHH----HHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHH
Confidence 99999987642211111 11346789999998887644 3444444444444444333
No 242
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.06 E-value=5.6 Score=43.37 Aligned_cols=128 Identities=27% Similarity=0.339 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcc
Q 002589 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (904)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (904)
.+-.++.....++|+++.++-.++..+.+..+|++.+-. +...---
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~-kl~~v~~--------------------------------- 87 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE-KLSAVKD--------------------------------- 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccc---------------------------------
Confidence 344556666677777788888888777777666654321 1111111
Q ss_pred cccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh-cc
Q 002589 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA-KL 314 (904)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 314 (904)
..|++.|.-|=-.+|..+..|..+|.+ ..+++-.|+++...+..++..+|..+.++.+.+. ++
T Consensus 88 -------------~~e~~aL~~E~~~ak~r~~~le~el~~---l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 88 -------------ERELRALNIEIQIAKERINSLEDELAE---LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666655544 3556677778888888888887777777665542 33
Q ss_pred ccchhhhhhHHHHHHHHHH
Q 002589 315 STLKVECKDLYEKVENLQG 333 (904)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~ 333 (904)
.-+..+-..+..+-+.|-.
T Consensus 152 ~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 152 AEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444455544443
No 243
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.01 E-value=12 Score=39.74 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHH
Q 002589 383 NELMQQKMKLLEERLQRSDEEIHSYVQ 409 (904)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (904)
|-+|++|++.|.+.+...+.++.+.+.
T Consensus 145 n~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766554
No 244
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.01 E-value=55 Score=42.34 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002589 359 VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
+++|+.+|.......---+.|-++|+++-+|-|.-=.-+
T Consensus 1287 l~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~ 1325 (1439)
T PF12252_consen 1287 LDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMV 1325 (1439)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 567777777766665566677788888876666544333
No 245
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.96 E-value=53 Score=37.19 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=61.9
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh-
Q 002589 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI- 371 (904)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 371 (904)
+..+|.|+..++..-.+.-.+ +..|-..|-+|...|-...+. + ++...-+-...||+-++ +++-|+.++.
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k---~~~eN~~L~eKlK~l~eQye~---r-E~~~~~~~k~keLE~Ql--~~AKl~q~~~~ 182 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIK---LREENEELREKLKSLIEQYEL---R-EEHFEKLLKQKELEVQL--AEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhHHHHHHHH--HHHHHHHHHHH
Confidence 566777777777655554444 233323344444333333322 2 22222222344444333 2222322221
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (904)
.+-..++.+++++.|=.+...+ ..+.....+...+|..|.+-.++||+||.+
T Consensus 183 ~~~e~~k~~~~~~~~l~~~~~~-~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 183 AEQEKEKAKQEKEILLEEAAQV-QTLKETEKELREQLNLYSEKFEEFQDTLNK 234 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344455555333333322 234556678889999999999999999876
No 246
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.76 E-value=4.6 Score=46.81 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (904)
.+...|+.-++....+..+.-..-.+...|+++++-.+.
T Consensus 318 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~ 356 (444)
T TIGR03017 318 QREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQR 356 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444433344455666666665444
No 247
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.73 E-value=20 Score=38.40 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=24.9
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (904)
.++.++..+.+|-...+.++..+..+|..|.+
T Consensus 141 AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 141 AEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666688888888888888888888887766
No 248
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.67 E-value=62 Score=39.00 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=42.6
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002589 250 KELDSLKTENLSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (904)
.|++.|+.|...+++.|+.|..++.. ..+..+.-..++.|...++.-+++++..+.... .+ ..||.-.+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~-e~e~~l~~~el 346 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPEL------TT-EAELRLYYQEL 346 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------ch-HHHHHHHHHHH
Confidence 55666666666666666666666522 222333334566666667777777766553322 12 55555555555
Q ss_pred HHHHHH
Q 002589 329 ENLQGL 334 (904)
Q Consensus 329 ~~~~~~ 334 (904)
..++.=
T Consensus 347 ~~~~ee 352 (511)
T PF09787_consen 347 YHYREE 352 (511)
T ss_pred HHHHHH
Confidence 555443
No 249
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=87.59 E-value=23 Score=40.97 Aligned_cols=137 Identities=24% Similarity=0.390 Sum_probs=69.6
Q ss_pred HHhhhhhhhhhHHHHHHhhh----------------hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 002589 271 AELNSVKDADERVVMLEMER----------------SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (904)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (904)
..+..+++-|.||..||+=- ..|-.+|.+|++|++.-+. .+|..++-.-+.|-.+.++|.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~-- 281 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA-- 281 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH--
Confidence 35677778888888777632 1244567777777766532 344444333333333333322
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc----hHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHH
Q 002589 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS----SEKMQQYNELMQQKMKLLEERLQ---RSDEEIHSY 407 (904)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 407 (904)
+..+ + ..+..+...||+.|=+.|..-.-+--. .+.|+.++ -||+.+..+-.++. ....+|.+.
T Consensus 282 --~~~~----~---~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 282 --EKRK----E---AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred --hccc----c---ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 123345567777777666654433222 12233222 23444444444433 344566666
Q ss_pred HHHHHHHHHHHHHH
Q 002589 408 VQLYQESVKEFQDT 421 (904)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (904)
++.+...+...+..
T Consensus 352 l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 352 LKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 250
>PRK11519 tyrosine kinase; Provisional
Probab=87.56 E-value=51 Score=41.32 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=31.2
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP 553 (904)
.+-|++.|++.. | .-|-..++.+||.+|+..|+.|-+|=.
T Consensus 524 ~~~kvi~vts~~-~---geGKTt~a~nLA~~la~~g~rvLlID~ 563 (719)
T PRK11519 524 AQNNVLMMTGVS-P---SIGKTFVCANLAAVISQTNKRVLLIDC 563 (719)
T ss_pred CCceEEEEECCC-C---CCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 345888888732 2 347778899999999999999999943
No 251
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.54 E-value=7.6 Score=43.88 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhchh
Q 002589 138 SMIRNAEKNILLLNEA-----RVQALEDLHKILQE-KEALQGEINALEMRLAETD 186 (904)
Q Consensus 138 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (904)
..++|.-.+-.+...+ |.+-++.+...|.+ .+.|+...+.|...++..+
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555543 56666666655543 4566666666666555544
No 252
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.51 E-value=9.9 Score=42.95 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=37.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh-cchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002589 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS-ISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (904)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (904)
-..|++|.+.|...+..+. +-+-.+....+.|+..+..|..... ....|-.+|..++.+-...-.+++..+..|+.
T Consensus 158 ~~~L~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 158 LELLQEDYAKLDKQLEQLD---ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544444333 2223333344444444444443322 44566666666666666666666655555544
No 253
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.40 E-value=33 Score=42.99 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.3
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLK 298 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 298 (904)
.+.-..|-.|||.++..+-.++.+|-+. .--++.+-.|||+|.-+..-++
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3444567778888887777666666554 3445666778888876554443
No 254
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.13 E-value=12 Score=44.93 Aligned_cols=41 Identities=41% Similarity=0.474 Sum_probs=25.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHH
Q 002589 316 TLKVECKDLYEKVENLQGLLAK-------ATKQADQAISVLQQNQELR 356 (904)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 356 (904)
.|+.|-+.|-|.+|-|...++. |.+|-+.|...|++-.+-+
T Consensus 198 glkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk 245 (772)
T KOG0999|consen 198 GLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK 245 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4555666666666655554443 4568888888888766543
No 255
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.08 E-value=35 Score=43.82 Aligned_cols=215 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccc
Q 002589 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (904)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (904)
+.|...+.|..+|++.-..||..+....+.+.---+ .++-++..+|.+|......+-.|--+ ..-|.
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~---~~~~l~kdVE~~rer~~~~~~Ie~l~------~k~~~---- 240 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED---EIDKLEKDVERVRERERKKSKIELLE------KKKKW---- 240 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------Hhccc----
Confidence 346777888899999999999999887766653333 45678888899988887765443110 00111
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 002589 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (904)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (904)
-..--...|++.++..--.+|.++..+..+.. ......-.||.|++.+.+..+.+-.-+-.+-+.+-++..
T Consensus 241 ----v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~---pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e-- 311 (1072)
T KOG0979|consen 241 ----VEYKKHDREYNAYKQAKDRAKKELRKLEKEIK---PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE-- 311 (1072)
T ss_pred ----cchHhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 00112245666666666666666666555433 333344455555555555555444444433333222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHH-HHHHHHHHHHHHhh
Q 002589 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN-ELMQQKMKLLEERL 397 (904)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 397 (904)
.-+..=++|+.++.-|..+.+++++--. .=+..++-++.+++-|.+++++.-.-+++|..+ +.+|.+..-+.+.-
T Consensus 312 -k~~~~~~~v~~~~~~le~lk~~~~~rq~---~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~ 387 (1072)
T KOG0979|consen 312 -KLKEIEDEVEEKKNKLESLKKAAEKRQK---RIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSR 387 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhh
Confidence 0012223445555555555555554311 223456777888888999999888888776543 44444444444333
Q ss_pred cc
Q 002589 398 QR 399 (904)
Q Consensus 398 ~~ 399 (904)
+.
T Consensus 388 ~~ 389 (1072)
T KOG0979|consen 388 QE 389 (1072)
T ss_pred hh
Confidence 33
No 256
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.28 E-value=1.3e+02 Score=39.86 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=18.1
Q ss_pred CCcEEEEEecccCccCHHHHHHHHHHh
Q 002589 810 RKPLVGCITRLVPQKGVHLIRHAIYRT 836 (904)
Q Consensus 810 d~plVgfVGRL~~qKGIdlLIeAiarL 836 (904)
....++|+|-+.+. +...++-++.++
T Consensus 1131 ~~~~l~~~~~~~k~-~~~~~il~i~k~ 1156 (1317)
T KOG0612|consen 1131 SKKILFYVSEQDKE-QSGPLILDIKKL 1156 (1317)
T ss_pred ccceEeeecccccc-ccchhhhhhhhc
Confidence 34566788888776 777777777764
No 257
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=86.01 E-value=44 Score=35.26 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=53.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHHH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHH
Q 002589 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDT 421 (904)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 421 (904)
..+.+.+.+.+.+++.++.++.+... +-+.+++++ ..+.+++++..++.++......+..=++.+... +.+|+.+
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777666665 334455543 344566777777888888888888777777766 7788887
Q ss_pred HHhh
Q 002589 422 LHSL 425 (904)
Q Consensus 422 ~~~~ 425 (904)
|...
T Consensus 212 l~~~ 215 (236)
T PF09325_consen 212 LEEY 215 (236)
T ss_pred HHHH
Confidence 7663
No 258
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.20 E-value=14 Score=46.19 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=64.2
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (904)
+..|+.+=..+...+..+... ..+....+..+..+.+.|++.+++.-.++..+ ++.+....-.+.+.|
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~---y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~---------~~~~~~~a~~~~~~L 357 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTT---MLANHPRVVAAKSSLADLDAQIRSELQKITKS---------LLMQADAAQARESQL 357 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 333444433344333333332 34455567777777777777665543333222 233444666777888
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002589 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (904)
+..++....++.+.-..-.+..+|+++++-.++.++
T Consensus 358 ~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 358 VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777888888888887776554
No 259
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.76 E-value=28 Score=41.01 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=19.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (904)
.+..+++.++..-..++..+..|++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666766666777777777666654
No 260
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=84.63 E-value=61 Score=34.74 Aligned_cols=94 Identities=15% Similarity=0.266 Sum_probs=63.4
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHHHH
Q 002589 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM---QQKMKLLEERLQRSDEEIHSYVQLY 411 (904)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
+..+..--.+=.-+++..|.++..+++.++.++...... .++|+++.+.-+ ++++.....+++..-.-|..-+..+
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~-~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG-RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445577888888888888888776665432 356776655544 6777778888888888888877777
Q ss_pred HHH-HHHHHHHHHhhHhhh
Q 002589 412 QES-VKEFQDTLHSLKEES 429 (904)
Q Consensus 412 ~~~-~~~~~~~~~~~~~~~ 429 (904)
... +.+|..+|...-+..
T Consensus 187 ~~erv~dfk~~l~~~le~~ 205 (224)
T cd07623 187 EKNRVKDFKDIIIKYLESL 205 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 655 888888887744433
No 261
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.59 E-value=81 Score=36.10 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=73.7
Q ss_pred HhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCC----CCCCCccchhhhccccccccchhhhHH
Q 002589 721 AIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTD----AWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 721 ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d----~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
.+-.||.+++++.....+++. +| ..+.++. -+||+-.- .|.|. .
T Consensus 123 ~~Pla~~ii~P~~~~~~~~~~--~G--------~~p~~i~-~~~giae~~~v~~f~pd---------------------~ 170 (346)
T COG1817 123 TLPLADVIITPEAIDEEELLD--FG--------ADPNKIS-GYNGIAELANVYGFVPD---------------------P 170 (346)
T ss_pred chhhhhheecccccchHHHHH--hC--------CCcccee-cccceeEEeecccCCCC---------------------H
Confidence 345689999998877766654 22 1233432 25565432 23331 2
Q ss_pred HHHHHcCCCCCCCCCcEEEE--E----ecccCccCHHHHHHHHHHhhcCCcEEEEEecCCcccc-cH-------------
Q 002589 797 SIRKHLGLSSADARKPLVGC--I----TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHI-QV------------- 856 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgf--V----GRL~~qKGIdlLIeAiarLle~nvqLVLVGdGp~~~l-ek------------- 856 (904)
.+-+++|+.. +.+.|++ . .-...+.|++.+.+++..+.+-+ .+++--..+...+ +.
T Consensus 171 evlkeLgl~~---~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g-iV~ipr~~~~~eife~~~n~i~pk~~vD~ 246 (346)
T COG1817 171 EVLKELGLEE---GETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG-IVLIPREKEQAEIFEGYRNIIIPKKAVDT 246 (346)
T ss_pred HHHHHcCCCC---CCceEEEeeccccceeeccccchhhHHHHHHHHHhCc-EEEecCchhHHHHHhhhccccCCcccccH
Confidence 3557899974 2244321 1 12234677777888888876655 2222222222211 00
Q ss_pred HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCCCc
Q 002589 857 YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 857 e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
..++.-||+++-. -|...-||..+|+|++.--.|
T Consensus 247 l~Llyya~lvig~-----ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 247 LSLLYYATLVIGA-----GGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred HHHHhhhheeecC-----CchHHHHHHHhCCceEEecCC
Confidence 0355555555543 477888999999998654444
No 262
>PF13514 AAA_27: AAA domain
Probab=84.44 E-value=1.5e+02 Score=39.11 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=14.9
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHh
Q 002589 269 LKAELNSVKDADERVVMLEMERSSLESSLKELES 302 (904)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (904)
++..+........++..++++...++..+..|=.
T Consensus 738 l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 738 LREALAEIRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 263
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.21 E-value=8.3 Score=41.90 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 002589 160 DLHKILQEKEALQGEINAL 178 (904)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (904)
.+.....+++.|+.+|+.+
T Consensus 28 ~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666776666543
No 264
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.19 E-value=94 Score=38.75 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccch--HHHH----HHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHH
Q 002589 377 EKMQQYNELMQQKMKLLEERLQRSD--EEIH----SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLL 450 (904)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 450 (904)
.+|..+.+.+|+++..+..+.+-+- +... .++..|...+.+-.+.++.+++.-|.-++ ..-.+|
T Consensus 308 s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~----------srk~il 377 (660)
T KOG4302|consen 308 SNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEAL----------SRKEIL 377 (660)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3466677888899999999988887 4444 45566666666766667776655544211 224677
Q ss_pred HHhhhhh
Q 002589 451 LIIDGWL 457 (904)
Q Consensus 451 l~~d~~~ 457 (904)
-++|.|.
T Consensus 378 ~~ve~W~ 384 (660)
T KOG4302|consen 378 ERVEKWE 384 (660)
T ss_pred HHHHHHH
Confidence 7899994
No 265
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.04 E-value=20 Score=40.59 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=35.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL-YEK 327 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (904)
..||+.+|++=..+..+|+..+.++.+ ++.|.+.+++.+.+.+.+...-++.+.++....-+|+.| -..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e----------~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEE----------LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345555554444444444444444332 233344444444444444444444444444444555555 334
Q ss_pred HHHHHHHHH
Q 002589 328 VENLQGLLA 336 (904)
Q Consensus 328 ~~~~~~~~~ 336 (904)
|.+|++.+.
T Consensus 273 i~~Lk~~~~ 281 (312)
T smart00787 273 IEKLKEQLK 281 (312)
T ss_pred HHHHHHHHH
Confidence 444444333
No 266
>PRK09039 hypothetical protein; Validated
Probab=83.91 E-value=31 Score=39.46 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHH
Q 002589 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (904)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (904)
.+++.++..|++.|.+... .+++ .+.-..+|+++|..|+..+..-..+|
T Consensus 112 ~~~~~~~~~l~~~L~~~k~--~~se-~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQ--VSAR-ALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666665554432 1222 23344667777777776644433333
No 267
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.82 E-value=17 Score=42.70 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=39.9
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 002589 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (904)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (904)
.-+...|-.+|++.|+-|--+..++.+.-.++.++-+..+++-..++.|+...
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888888888877777777777777776554
No 268
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.32 E-value=37 Score=35.95 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=18.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (904)
+|.-.+|+.+||+.-+-.++....+...+.
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777766666666655555443
No 269
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.24 E-value=1.3e+02 Score=37.24 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh
Q 002589 155 VQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ 194 (904)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (904)
..-|++++.-+...+.+|..|.-|+.|+++...++.....
T Consensus 127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie 166 (629)
T KOG0963|consen 127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIE 166 (629)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3457888888888999999999999999999887765443
No 270
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=83.22 E-value=5.6 Score=42.48 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=87.1
Q ss_pred CccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHH
Q 002589 125 GEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLED 204 (904)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
..++++-|-|-+++.|.+. +| -+++.+.+-+.-|+..+. .+| -..-
T Consensus 56 ~~Gf~~kQAETIt~aiT~v------~n----dsl~~vsk~~vtkaqq~~----v~~--------------------QQ~~ 101 (220)
T KOG3156|consen 56 AAGFDSKQAETITSAITTV------LN----DSLETVSKELVTKAQQEK----VSY--------------------QQKV 101 (220)
T ss_pred HcCCChhhHHHHHHHHHHH------Hc----ccHHHHHHHHHHHHHHHH----HHH--------------------HHHH
Confidence 4567777888888887763 33 357777776666554432 221 2345
Q ss_pred HHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-
Q 002589 205 QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV- 283 (904)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (904)
.+-|+|.||-+ ..-.||..|+.||-.||+||+.+|+.|.+--.+.-.=
T Consensus 102 ~f~kiRsel~S-------------------------------~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~ 150 (220)
T KOG3156|consen 102 DFAKIRSELVS-------------------------------IERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEF 150 (220)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 56788888876 3356899999999999999999999997654332211
Q ss_pred ---HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002589 284 ---VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (904)
Q Consensus 284 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (904)
.-|||=|--=+++-.+|--+ +++ ..+=..|.||..+++.+.-|.-|.
T Consensus 151 rLdLNLEkgr~~d~~~~~~l~~~---------e~s------~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 151 RLDLNLEKGRIKDESSSHDLQIK---------EIS------TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred eeecchhhccccchhhhcchhHh---------HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344332222222222222 111 123367888888888877776654
No 271
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.16 E-value=1.9e+02 Score=39.24 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002589 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (904)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (904)
.+.++++.++..++..+.....++.-+ +...+.++.+++.++.++..- ..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~l~~~~~~l------------------------~~~~a 328 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEEREL---DARTEALEREADALRTRLEAL------------------------QGSPA 328 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh------------------------cCCHH
Confidence 344555566666666666555544322 223456677777777777653 22223
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002589 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (904)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (904)
....++++.++.+...+..++.....++.. ...+...++.+...++..+.+.+..+..+.
T Consensus 329 ~~~~~eL~el~~ql~~~~~~a~~~~~~~~~---a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~ 388 (1353)
T TIGR02680 329 YQDAEELERARADAEALQAAAADARQAIRE---AESRLEEERRRLDEEAGRLDDAERELRAAR 388 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777655555555544444322 233333334443334444444444433333
No 272
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=83.08 E-value=22 Score=35.49 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=26.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (904)
..++..+-++-..+.+|++..+..+..+....+.+...
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 34566666677778888888888888877777665543
No 273
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.93 E-value=8.8 Score=37.83 Aligned_cols=56 Identities=38% Similarity=0.457 Sum_probs=35.1
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKL 304 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (904)
.++|..+|+|.-.++..|..|+++.......= ..-...+.++..|+..+.+++.++
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777655432 222334444455555555555443
No 274
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.47 E-value=70 Score=34.71 Aligned_cols=155 Identities=21% Similarity=0.344 Sum_probs=86.3
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 002589 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (904)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (904)
+++.|..|...|. +++..|+-...+=.+.++..+..|..++..--.+ +...++.-+..|-+++..|+..+..-..+
T Consensus 39 i~e~i~~Le~~l~--~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 39 IKEQIQKLEKALE--AEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3455555555555566777777776555433222 44555555667777777777777665554
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002589 342 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (904)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (904)
-.+.+ -..++.|.++|..|.+.++.-.......+. +. ++.|++....-...|..-.......+.++.+.
T Consensus 115 r~~~i--e~~~~~l~~~l~~l~~~~~~Er~~R~erE~--~i-------~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 115 RPQDI--EELNQELVRELNELQEAFENERNEREEREE--NI-------LKRLEEEENRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 345677888888888888766555444331 12 23334444443444444334444455555555
Q ss_pred HHhhHhhhhh
Q 002589 422 LHSLKEESKK 431 (904)
Q Consensus 422 ~~~~~~~~~~ 431 (904)
|+.++...++
T Consensus 184 le~~~~~~~~ 193 (247)
T PF06705_consen 184 LEEVKRRREK 193 (247)
T ss_pred HHHHHHHHhh
Confidence 6665544433
No 275
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.32 E-value=73 Score=38.93 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002589 152 EARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (904)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (904)
++=.++-.+|+++.....+...+++-|+-.+.|-
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El 197 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEEL 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555666666555554
No 276
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.30 E-value=1.1e+02 Score=40.02 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=14.0
Q ss_pred hHhhhhhhhhhccchhHHH
Q 002589 249 SKELDSLKTENLSLKNDIK 267 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (904)
..||.++++|..-++.-+.
T Consensus 496 ~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 496 NKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888877776643
No 277
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=82.30 E-value=82 Score=34.43 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=52.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHH---HHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHH
Q 002589 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE---LMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLH 423 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 423 (904)
+.++.|+++..+.+.++.++.-.- ...++|+++... -+++|+...+.+|+.....|..-+..++.. +++|..++.
T Consensus 131 ~~~~~~~~~~~l~kKr~~~~Kl~~-~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~ 209 (234)
T cd07665 131 TWQRWQDAQAMLQKKREAEARLLW-ANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHII 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444333211 124677776543 467899999999999999999998888887 899988877
Q ss_pred h
Q 002589 424 S 424 (904)
Q Consensus 424 ~ 424 (904)
.
T Consensus 210 ~ 210 (234)
T cd07665 210 K 210 (234)
T ss_pred H
Confidence 7
No 278
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.00 E-value=1.4e+02 Score=39.34 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhh----hhhhhhHhhhHHHHHHHHHHhhhc
Q 002589 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVA----AQEKIHVELLEDQLQKLQHELTHR 216 (904)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 216 (904)
.+..+..++-|+++++.+....-|.|.|.-.--| -|....+++.++-|.|.+++++..
T Consensus 1549 s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1549 SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665432211 233345667777888888888764
No 279
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=81.89 E-value=2.2 Score=50.57 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=54.4
Q ss_pred HHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCcc--cccH------------------
Q 002589 799 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQV------------------ 856 (904)
Q Consensus 799 Rk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~--~lek------------------ 856 (904)
|+.||||. +..++++..++.+ =-...++++.++++ ++.+|+|...+... .+.+
T Consensus 276 R~~~gLp~---d~vvF~~fn~~~K--I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 276 RAQYGLPE---DAVVFGSFNNLFK--ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp TGGGT--S---SSEEEEE-S-GGG----HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred HHHcCCCC---CceEEEecCcccc--CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCC
Confidence 67899994 6678888877654 45677888888876 47888887643221 1111
Q ss_pred --H---HHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCCCcc
Q 002589 857 --Y---PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPW 896 (904)
Q Consensus 857 --e---~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~~ 896 (904)
. ..|..+|+++=|-.|-+ |.+.+||+.+|+||+.-....
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p~nG-~TTt~dALwmGVPvVTl~G~~ 394 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFPYNG-GTTTLDALWMGVPVVTLPGET 394 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SS
T ss_pred CHHHHHHHhhhCCEEeeCCCCCC-cHHHHHHHHcCCCEEeccCCC
Confidence 0 67788999999866644 789999999999997655443
No 280
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.40 E-value=23 Score=40.34 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=78.8
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHH--hhhhhHHhhHHHHHhhhhcchhhhhccc----cc
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE--MERSSLESSLKELESKLSISQEDVAKLS----TL 317 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 317 (904)
....|..|+..||..=..++-||..|+..+....-.++.+..-. .||+.|=..|..+..+...-+.|+--+- -+
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477888888888877888888888888877654443332222 6666666666666666666555554332 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhHH----HHhhhhHHHHHHHHHHHHHH
Q 002589 318 KVECKDLYEKVENLQGLLAKATKQADQAI----SVLQQNQELRKKVDKLEESL 366 (904)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 366 (904)
..|=...-.||+.|..-|.-+.+-.+.-| .++-.|.-|+.++-.+++..
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567899998887766665544332 25667888888777776543
No 281
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.40 E-value=39 Score=42.73 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=69.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (904)
+..+..+|..++.||..|.+.++ +-++-|..|.++++..++.+.+|-.+|...+-+. ++||||---+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~----------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken---~~Lkye~~~~ 160 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQ----------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN---SSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44668888999999988877653 3345566777777777777777777776665543 4677776656
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 002589 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (904)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (904)
.+.+|---.=.+--++-||-| -.|+.+=-+||-|||+--
T Consensus 161 ~keleir~~E~~~~~~~ae~a---~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAA---SKQHLESVKKIAKLEAEC 199 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 555553333333333333433 567888889999999854
No 282
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.14 E-value=0.48 Score=59.94 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
.+...+..++.+|..|.++|..|...+++. .+-+.....||.|...|...|.|+|..+..
T Consensus 423 e~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 423 ELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA 486 (859)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888887776653 334444555555555555555555554444
No 283
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.67 E-value=28 Score=38.66 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=78.0
Q ss_pred ccchhHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHH
Q 002589 130 TSQLDNLISMIRNAEK-NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQK 208 (904)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (904)
+.=|+=|.+.|+-..+ ++.-|.+.++ ..+..++...|..+=++.=|.++|-|.-...+...+ .+..+.+-+.
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl---~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~----~~~~e~eke~ 197 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESDL---KEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ----HETREEEKEE 197 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3446667777777766 4666666664 456667778888888888888888774211111111 1122222222
Q ss_pred HHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHh
Q 002589 209 LQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEM 288 (904)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (904)
.+..|. ..-+|++.+.+|=......+..++. .++++-.|+..|+.
T Consensus 198 ~~r~l~--------------------------------~~~~ELe~~~EeL~~~Eke~~e~~~---~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 198 KDRKLE--------------------------------LKKEELEELEEELKQKEKEVKEIKE---RITEMKGRLGELEM 242 (269)
T ss_pred HHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 222221 2234444444443333333333443 34677888999999
Q ss_pred hhhhHHhhHHHHHhhhhcc
Q 002589 289 ERSSLESSLKELESKLSIS 307 (904)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ 307 (904)
|++-|...+..+.||.--.
T Consensus 243 ~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 243 ESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999888877765433
No 284
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.54 E-value=37 Score=40.31 Aligned_cols=215 Identities=19% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCCccccccchhHHHHHHHhhhhhH-HHHHHHHHHHHH--HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhH
Q 002589 123 DGGEELSTSQLDNLISMIRNAEKNI-LLLNEARVQALE--DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHV 199 (904)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (904)
|.+-+.+..==+|....++|.--=. --.|..|+-|+- ---+||.=.-=+-.-|.-++|-|+-- .+...+-+-
T Consensus 151 Dp~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~~~~~~~~-----~tl~qq~~~ 225 (622)
T COG5185 151 DPGFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKLDMCLQPL-----KTLDQQDRY 225 (622)
T ss_pred CCCCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhh-----chHhhccHH
Confidence 3344444444455555555432111 124666666662 23466666655666666677766321 111111111
Q ss_pred hhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhh-hhhhhccchhHHHHHHHHhhhhhh
Q 002589 200 ELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDS-LKTENLSLKNDIKVLKAELNSVKD 278 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 278 (904)
|++ +||+-=+---+ +-..|+... +.--++-+||.. ..+-|.-+-+||..||++..+.-+
T Consensus 226 e~~---Vek~lfdY~~~------~Y~~fl~~~-----------~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e 285 (622)
T COG5185 226 ELM---VEKLLFDYFTE------SYKSFLKLE-----------DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYE 285 (622)
T ss_pred HHH---HHHHHHHHHHH------HHHHHhcCC-----------CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 33332221111 111222211 111144566643 445577788899999988766544
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc----cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS----TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQE 354 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
-- +|--.+.+.++.|+.|-.+-+.|.-++- .++.-...|--+.+.|+.=... +=.+-+-
T Consensus 286 ~i-------~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----------kEeei~~ 348 (622)
T COG5185 286 KI-------QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----------KEEEIKA 348 (622)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----------HHHHHHH
Confidence 33 3444566677777777766666655542 2333333455666666654443 3445577
Q ss_pred HHHHHHHHHHHHhhhhhhhhchHHH
Q 002589 355 LRKKVDKLEESLDEANIYKLSSEKM 379 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
||.+.|.|...++.-.|+-.--+++
T Consensus 349 L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 349 LQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 8899999999999888875544433
No 285
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=80.48 E-value=1.3e+02 Score=35.60 Aligned_cols=142 Identities=15% Similarity=-0.015 Sum_probs=91.3
Q ss_pred hhhHHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHH
Q 002589 717 PLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKE 796 (904)
Q Consensus 717 ~lK~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~ 796 (904)
+.+..+...|.|++=|+-.++...+ .| . .++.+.-| ++.... ..+.. .....
T Consensus 170 ~~~~~~~~i~li~aQse~D~~Rf~~--LG--------a--~~v~v~GN---lKfd~~-~~~~~------------~~~~~ 221 (419)
T COG1519 170 LARLLFKNIDLILAQSEEDAQRFRS--LG--------A--KPVVVTGN---LKFDIE-PPPQL------------AAELA 221 (419)
T ss_pred HHHHHHHhcceeeecCHHHHHHHHh--cC--------C--cceEEecc---eeecCC-CChhh------------HHHHH
Confidence 4566778899999999988888775 22 1 22434333 221111 11100 12356
Q ss_pred HHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhcC--CcEEEEEecCCccc--ccH----------------
Q 002589 797 SIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVPH--IQV---------------- 856 (904)
Q Consensus 797 aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle~--nvqLVLVGdGp~~~--lek---------------- 856 (904)
.+|.+++.+ +|++++.|. +..--+.+++|+..+.+. |..+|+|=--|++- +++
T Consensus 222 ~~r~~l~~~-----r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~ 294 (419)
T COG1519 222 ALRRQLGGH-----RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGD 294 (419)
T ss_pred HHHHhcCCC-----CceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCC
Confidence 778888743 478888887 444456788999888864 67777775434331 110
Q ss_pred -----------------HHHHHhcCeEEEc-CCCCCChHHHHHHccCCcccccCC
Q 002589 857 -----------------YPILLSSFSFLRK-HIFNICNLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 857 -----------------e~LyAaADVfVlP-S~~EpFGLv~LEAMg~gl~V~~~v 893 (904)
..+|..||+.++- |..+-=|=-.+|+.++++||+.|-
T Consensus 295 ~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp 349 (419)
T COG1519 295 PPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGP 349 (419)
T ss_pred CCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCC
Confidence 0999999999886 555544668999999999998873
No 286
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.25 E-value=83 Score=39.83 Aligned_cols=101 Identities=29% Similarity=0.332 Sum_probs=54.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh------------------------hhhhhHHHHHHhhhhhHHhhHHHHHh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV------------------------KDADERVVMLEMERSSLESSLKELES 302 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (904)
+.-+|++.++.||-.|+++-+-+-.+|..- +...+-+..+-++-+...+++.++++
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~ 813 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQS 813 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 345677888888877776665555555221 12234555666666667777778887
Q ss_pred hhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 002589 303 KLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAIS 347 (904)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (904)
++..-+++...+-...-.--+.-+..+.-..-++++++.++|-..
T Consensus 814 e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls 858 (970)
T KOG0946|consen 814 ELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLS 858 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHH
Confidence 777777766544332222112222222222334555555555433
No 287
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.05 E-value=56 Score=35.29 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=16.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (904)
++..-++.++.|...+=+.=..+-..|..
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~ 85 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLRE 85 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766655554444444443
No 288
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=80.03 E-value=69 Score=40.80 Aligned_cols=230 Identities=21% Similarity=0.265 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc-ccCcccchhhhccCCCCcccc
Q 002589 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-GVSEHSELDVFANQNEPANED 237 (904)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (904)
.+.++.++.+..++..+..||-|++-..+.+-- .-.+++.+-.++.-. ..+.....+ ......|
T Consensus 557 q~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e----------~~se~e~~l~~l~l~~el~~~~~~d-----~ls~mkd 621 (984)
T COG4717 557 QHWQQLRKALDQLEAAYEALEGRFAAAEAAMAE----------WQSEWEEALDELGLSRELSPEQQLD-----ILSTMKD 621 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHhccCCccCCcHHHHH-----HHHHHHH
Confidence 467788888888888888888887766544321 223445555555433 111111111 0111222
Q ss_pred cccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 002589 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQEDVAKLST 316 (904)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (904)
...-+-.+|.|..+..-|++|-...-+-.+.|-+.+ +....+.+.. -.++=|...+ ..-|..-.++|.+..--.-
T Consensus 622 ~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e---~~~Ee~r~~le~~~~~t~E 697 (984)
T COG4717 622 LKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAE---LQKEEARLALEGNIERTKE 697 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHH---HhhHHHHHHHhhhHHHHHH
Confidence 222334445555555555555544444444444333 2222222211 1111111100 0011111222222221111
Q ss_pred chhhhhhHHHH-HHHHHHHHHHHhhhhh----hHHHHhhhhHHHHHHHHHHHHHHh--hhhhhhhchHHHHHHHHHHHHH
Q 002589 317 LKVECKDLYEK-VENLQGLLAKATKQAD----QAISVLQQNQELRKKVDKLEESLD--EANIYKLSSEKMQQYNELMQQK 389 (904)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 389 (904)
+..+-++=-++ =..+-+|+|+++-.-+ +|+.--+|.++...++..+++.|+ -+.-|.++.+..|..-- ...
T Consensus 698 l~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E 775 (984)
T COG4717 698 LNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEE 775 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHH
Confidence 11111111111 2245677887764433 456778999999999999999999 67788888875544322 344
Q ss_pred HHHHHHhhccchHH---HHHHHH
Q 002589 390 MKLLEERLQRSDEE---IHSYVQ 409 (904)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~~~~ 409 (904)
..++|+.++.-+++ ++++|.
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~ 798 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVA 798 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554 455444
No 289
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=79.54 E-value=75 Score=37.68 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=54.2
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh----------cch
Q 002589 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS----------ISQ 308 (904)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 308 (904)
+..++.+|.+.+||..+|-|--.-++|++.+..+ +-.|+.+--.+|+..++||+... +++
T Consensus 298 ~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q----------~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~ 367 (554)
T KOG4677|consen 298 IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQ----------YTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASI 367 (554)
T ss_pred cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhh
Confidence 4567779999999999999999999999887654 34455555566677777776553 345
Q ss_pred hhhhccccchhhhhh
Q 002589 309 EDVAKLSTLKVECKD 323 (904)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (904)
..+-.+-++++||--
T Consensus 368 ~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 368 LNMPLVLTLFYECFY 382 (554)
T ss_pred hhchHHHHHHHHHHH
Confidence 555556677888843
No 290
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.22 E-value=36 Score=42.64 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=57.8
Q ss_pred chhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccch
Q 002589 184 ETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLK 263 (904)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (904)
|.|--..+...-+-..+.+|.|...||.||..--..|- .+-.+++.|.+||.+|.
T Consensus 56 e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~-------------------------rll~dyselEeENislQ 110 (717)
T PF09730_consen 56 ENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA-------------------------RLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHhhhhHHHHHHHHHHH
Confidence 33333344555556677788888888888876433321 34566788888888888
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 002589 264 NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 299 (904)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (904)
..+-.||+-=.++-..---+..|+.|-..|.+.+.|
T Consensus 111 Kqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876666655445555555555555554433
No 291
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.99 E-value=67 Score=41.71 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=95.8
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL---- 314 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 314 (904)
+.+|.|-..+..++.+=..+|.++..++.++.. ..+...++..++++-...+..+++|+.+....+..|-+=
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ 762 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRR 762 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345556666666665555556666555555533 334555666777777777888888888777776655321
Q ss_pred ---ccchhhhhhHH----HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHH
Q 002589 315 ---STLKVECKDLY----EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (904)
Q Consensus 315 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (904)
.-..||=..+. .|.-.++..++++.+|.| +..| +|.+++|.+++.+++..+. ..+.+++-.+.+-
T Consensus 763 igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~----fe~~-~d~~~~ve~~~~~v~~~~~---~~~~~~~~e~~~~ 834 (1141)
T KOG0018|consen 763 IGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD----FEKQ-KDTQRRVERWERSVEDLEK---EIEGLKKDEEAAE 834 (1141)
T ss_pred cCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----heec-ccHHHHHHHHHHHHHHHHH---hHHhhHHHHHHHH
Confidence 12233322221 233334455555555543 4444 9999999999998877654 2444444445555
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002589 388 QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (904)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (904)
..+...|+.=.++ ++-...++..+.+-...+..+-+
T Consensus 835 k~i~e~~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~~ 870 (1141)
T KOG0018|consen 835 KIIAEIEELEKKN----KSKFEKKEDEINEVKKILRRLVK 870 (1141)
T ss_pred HHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443222211 44455555555555554444433
No 292
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.76 E-value=40 Score=35.71 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=17.3
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002589 248 FSKELDSLKTENLSLKNDIKVLKAELNSV 276 (904)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (904)
+-.+++.++.||..||.=----..+|...
T Consensus 24 lq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~ 52 (194)
T PF15619_consen 24 LQRKLQELRKENKTLKQLQKRQEKALQKY 52 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888876433333344444
No 293
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.57 E-value=1.9e+02 Score=36.27 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=54.1
Q ss_pred cCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh--hhhhh--hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 002589 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS--VKDAD--ERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (904)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (904)
..-..||.|-..|+...+.|...-.-++.||.+|.. +++++ ...-.|.-|...+-....++-..+...|+|+....
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK 526 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456679999999999999999888899999999985 34433 33445555655555555566556666777776543
No 294
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=78.02 E-value=38 Score=38.62 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=64.9
Q ss_pred hhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEec-CccCCCCCCCccchhhhccccccccchhhhHHHHHHH
Q 002589 723 VFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILN-GIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 801 (904)
Q Consensus 723 ~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPN-GID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~ 801 (904)
+.|+.-.+.++.+++.+... | .++.+++++-| ++|.-.. . +......+. .
T Consensus 121 ~la~lhf~~t~~~~~~L~~~----G------~~~~rI~~vG~~~~D~l~~------------~------~~~~~~~~~-~ 171 (346)
T PF02350_consen 121 KLAHLHFAPTEEARERLLQE----G------EPPERIFVVGNPGIDALLQ------------N------KEEIEEKYK-N 171 (346)
T ss_dssp HH-SEEEESSHHHHHHHHHT----T--------GGGEEE---HHHHHHHH------------H------HHTTCC-HH-H
T ss_pred hhhhhhccCCHHHHHHHHhc----C------CCCCeEEEEChHHHHHHHH------------h------HHHHhhhhh-h
Confidence 34888889999999988862 2 35678888755 3332100 0 000000110 0
Q ss_pred cCCCCCCCCCcEEEEEe-cccC---ccCHHHHHHHHHHhhcC-CcEEEEEecCCccc---ccH----------------H
Q 002589 802 LGLSSADARKPLVGCIT-RLVP---QKGVHLIRHAIYRTLEL-GGQFILLGSSPVPH---IQV----------------Y 857 (904)
Q Consensus 802 LGL~~~d~d~plVgfVG-RL~~---qKGIdlLIeAiarLle~-nvqLVLVGdGp~~~---lek----------------e 857 (904)
.++.. ....+.+++.. |.+. ......+..++..+.+. ++++|+.....++. +.. .
T Consensus 172 ~~i~~-~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~ 250 (346)
T PF02350_consen 172 SGILQ-DAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYE 250 (346)
T ss_dssp HHHHH-CTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HH
T ss_pred HHHHh-ccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHH
Confidence 12100 01334554444 2222 24466777777777764 88888877632221 100 0
Q ss_pred ---HHHHhcCeEEEcCCCCCChHHHH-HHccCCccccc
Q 002589 858 ---PILLSSFSFLRKHIFNICNLYIK-LGQGGDLTVNN 891 (904)
Q Consensus 858 ---~LyAaADVfVlPS~~EpFGLv~L-EAMg~gl~V~~ 891 (904)
.+++.|+++|-=| | .+. ||..+|+||++
T Consensus 251 ~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~P~v~ 282 (346)
T PF02350_consen 251 EYLSLLKNADLVVGDS-----S-GIQEEAPSLGKPVVN 282 (346)
T ss_dssp HHHHHHHHESEEEESS-----H-HHHHHGGGGT--EEE
T ss_pred HHHHHHhcceEEEEcC-----c-cHHHHHHHhCCeEEE
Confidence 7777888877644 6 455 99999999854
No 295
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.79 E-value=1.6e+02 Score=34.96 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=110.2
Q ss_pred cccccchhHHH-------HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhHHHhhhhchhhhhhhhhhh
Q 002589 127 ELSTSQLDNLI-------SMIRNAEKNILLLNEARVQALEDLHK----ILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (904)
Q Consensus 127 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (904)
++-++-+.||+ .-|=.|==|.-++-++|.+-.++.-- .+.-+-.+-.++..+.+.+-..|..-. ..
T Consensus 95 ~v~dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~---~d 171 (446)
T KOG4438|consen 95 GVLDFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVE---ED 171 (446)
T ss_pred CcCCCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cc
Confidence 45677777776 34445556777777777765544322 222223333345566666666654322 22
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc-chhhHhhhhhhhhhccchhH-HHHHHHHh
Q 002589 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI-HSFSKELDSLKTENLSLKND-IKVLKAEL 273 (904)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 273 (904)
-.-+.=+|++.+.|.+-|..- -.. -++..+.+..|..+.+++++ +.++|-..
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd--------------------------~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv 225 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKD--------------------------FNQQMSLLAEYNKMKKSSTSEKNKILNALKLLV 225 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 223444566666555444331 001 14566677777777776654 34555544
Q ss_pred hhhhhhhhHHH------------HHHhhhhh---HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHH
Q 002589 274 NSVKDADERVV------------MLEMERSS---LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKA 338 (904)
Q Consensus 274 ~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (904)
..+.++.+.+. .+++=+-. ..++..+|+.|-.+-++-|.-+.+++-|-+++..++.....-+
T Consensus 226 ~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~--- 302 (446)
T KOG4438|consen 226 VTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY--- 302 (446)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 44444433111 11111111 2345555665555555555555555555444444433332211
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 002589 339 TKQADQAISVLQQNQELRKKVDKLEESLDEANIY 372 (904)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (904)
+.-+.++..+.+|..|.++....+.-++.+.+.
T Consensus 303 -d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~ 335 (446)
T KOG4438|consen 303 -DSLETKVVELKEILELEDQIELNQLELEKLKMF 335 (446)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778889999988877666656555443
No 296
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=77.70 E-value=2.1e+02 Score=36.30 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh-----HhhhHHHHHHHHHHhhhc
Q 002589 163 KILQEKEALQGEINALEMRLAETDARIRVAAQEKIH-----VELLEDQLQKLQHELTHR 216 (904)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 216 (904)
-+-.|..-|+.++..|-..|.|. .|+|--++.... ...=-+|--.||.||.+.
T Consensus 125 ~~Khei~rl~Ee~~~l~~qlee~-~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 125 GLKHEIKRLEEEIELLNSQLEEA-ARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555554 333333322111 001113334678888884
No 297
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.48 E-value=7.1 Score=41.36 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=39.2
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc-chhhhhccccchhhhhhHHH-HHHHHHHH
Q 002589 273 LNSVKDADERVVMLEMERSSLESSLKELESKLSI-SQEDVAKLSTLKVECKDLYE-KVENLQGL 334 (904)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (904)
.+....+|--.+.|++|-+.||+.|...|..-.. ...+-++...+|.|...|.+ |-+.|+.+
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677778888999988888888888877766 33344455555665444444 44444433
No 298
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.32 E-value=6.7 Score=44.23 Aligned_cols=105 Identities=27% Similarity=0.286 Sum_probs=65.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (904)
..|...||.||-+||..++.||.++... |.|+- . +++-|++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerL----------E~e~l--~---------------------------s~V~E~v 71 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERL----------ENEML--R---------------------------SHVCEDV 71 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHH----------HHHhh--h---------------------------hhhhhHH
Confidence 3577889999999999999999987554 22211 0 1466888
Q ss_pred HHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 002589 329 ENLQGLLAKATKQADQA-ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (904)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (904)
+..|...++++|-.+.+ ..++-|..++ ++.+.-|....-|++-|.|+-+-.|+ .+++-.
T Consensus 72 et~dv~~d~i~Kimnk~Re~vlfq~d~~-----------------~ld~~lLARve~LlRlK~e~~~~~f~---k~~~~l 131 (420)
T PF07407_consen 72 ETNDVIYDKIVKIMNKMRELVLFQRDDL-----------------KLDSVLLARVETLLRLKDEQPSAEFD---KDSHPL 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-----------------cccHHHHHHHHHHHHhhhhccccccc---chhhhH
Confidence 88888888888777776 2333222221 23333344455678888887776554 344555
Q ss_pred HHHHH
Q 002589 408 VQLYQ 412 (904)
Q Consensus 408 ~~~~~ 412 (904)
|.-|-
T Consensus 132 Ig~Yf 136 (420)
T PF07407_consen 132 IGRYF 136 (420)
T ss_pred Hhhhc
Confidence 55553
No 299
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.05 E-value=1.9e+02 Score=37.69 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002589 377 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (904)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
.++-++++++.|| ...-++....+++.-++.|++-=-+|.+
T Consensus 408 r~~~~~~~~~~~k---~~~~l~~~~~d~~dAy~wlrenr~~FK~ 448 (1072)
T KOG0979|consen 408 RKLKQNSDLNRQK---RYRVLRQGSSDAYDAYQWLRENRSEFKD 448 (1072)
T ss_pred HHHHHHhhhhhhh---HHHHhccCchHHHHHHHHHHHCHHHhcc
Confidence 4566788888888 5556777778888888888877777765
No 300
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=77.05 E-value=1.2e+02 Score=33.16 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHH
Q 002589 347 SVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTL 422 (904)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 422 (904)
-++++.|..+.-+.|.++.++...- ...++|+++..+- .+.++...+..++....-|.+-|..+... +.+|..+|
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~-~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQY-ANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655544321 1246777766544 45677777777777777777777777655 78888777
Q ss_pred HhhH
Q 002589 423 HSLK 426 (904)
Q Consensus 423 ~~~~ 426 (904)
...-
T Consensus 209 ~~fl 212 (234)
T cd07664 209 IKYL 212 (234)
T ss_pred HHHH
Confidence 7643
No 301
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.66 E-value=1.2e+02 Score=33.13 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=30.6
Q ss_pred HhhHHHHHhhhhcchhhhhcc-ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 002589 294 ESSLKELESKLSISQEDVAKL-STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 353 (904)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (904)
+.-|.....-|..-+.+...| ..+...-.+.-.|+..|+++|..|..+..+|-.+...|+
T Consensus 159 ~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 159 EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333 223333334456666777777777777766666555554
No 302
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.63 E-value=2.6e+02 Score=36.88 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=19.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (904)
+...++..++.+-..++..+.....++..+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (1047)
T PRK10246 294 PHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRA 328 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655555443333
No 303
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.45 E-value=5.4 Score=42.56 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHhhhhhhHHHhhhhchhhh
Q 002589 169 EALQGEINALEMRLAETDAR 188 (904)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (904)
.+||.|+..|+.+|++.+..
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35566666777777776544
No 304
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.24 E-value=1e+02 Score=37.45 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=30.3
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh---hHHHHHHhhhhhHHhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD---ERVVMLEMERSSLESS 296 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 296 (904)
.+..++..++++...+...++.++.++.++.+.+ .--..|+.|+..|..+
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCH
Confidence 3456667777777777777777777766655443 2234566666555443
No 305
>PRK10869 recombination and repair protein; Provisional
Probab=76.22 E-value=1.9e+02 Score=35.26 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhccchHHHHH
Q 002589 385 LMQQKMKLLEERLQRSDEEIHS 406 (904)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~ 406 (904)
.|+++++.+++.+...-.++..
T Consensus 345 ~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 345 TLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 306
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.16 E-value=48 Score=35.06 Aligned_cols=102 Identities=24% Similarity=0.388 Sum_probs=61.8
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---------HHHhhhhHHHHHHHHH
Q 002589 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA---------ISVLQQNQELRKKVDK 361 (904)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 361 (904)
..|+..|+|||..+..+...+...-..+.. +-.+++.++....+-.++|..| ...|.+-.+++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~---le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKR---LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999888888888877766653 4455555555555555555555 3444444555555555
Q ss_pred HHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 002589 362 LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (904)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (904)
++..+..+ ....+.|...+..++.++..--.+-.
T Consensus 103 l~~~~~~~----------~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 103 LEQQLDQA----------EAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 33445556666666666554444333
No 307
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.02 E-value=54 Score=38.44 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=45.9
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh--------hhhH
Q 002589 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE--------CKDL 324 (904)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 324 (904)
..||-|-..|-|.++.=.+.|.+ .--+|+-+||.|...|..+| |=+.---....||++.-....+ ..-|
T Consensus 182 eQLRre~V~lentlEQEqEalvN--~LwKrmdkLe~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l 258 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVN--SLWKRMDKLEQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKL 258 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-cCcccCCCchhhhhcCccccCchHHHHHHHHHHH
Confidence 56666666666666654444432 34567777777777777666 3333333455666665333221 1123
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002589 325 YEKVENLQGLLAKATKQ 341 (904)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (904)
...||.|+..|..|.++
T Consensus 259 ~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554444
No 308
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.76 E-value=1e+02 Score=31.69 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=48.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhh-chHHHHH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHH
Q 002589 348 VLQQNQELRKKVDKLEESLDEANIYKL-SSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTL 422 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 422 (904)
++.+.+.+++.+.+.++.++......- ..+++++ -...+++.++.++.++......+..-+..+... +.+|..+|
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555543211 2233332 334556677777788888777777777776664 77777777
Q ss_pred HhhHhh
Q 002589 423 HSLKEE 428 (904)
Q Consensus 423 ~~~~~~ 428 (904)
..+...
T Consensus 195 ~~~~~~ 200 (218)
T cd07596 195 KEFARL 200 (218)
T ss_pred HHHHHH
Confidence 765443
No 309
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.56 E-value=25 Score=36.23 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc
Q 002589 275 SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL 314 (904)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (904)
++.+...++..+++|...++..+.++++.+...+.+...+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555666666666666666666555554444333
No 310
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.51 E-value=69 Score=38.44 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=55.7
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002589 251 ELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (904)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (904)
.|..+-.|.-+|-+.++.|+..++.|. --..++..+||+|+-|+.-..+ +...-+.-|-|+..|-.+-+.--...+
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~---e~~e~rk~v~k~~~l~q~~~~~~~eL~ 308 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE---ETTEKRKAVKKRDDLIQSRKQVSFELE 308 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788889999999999999998 6778899999999998876544 444445555555555444333333333
Q ss_pred HHHHHH
Q 002589 330 NLQGLL 335 (904)
Q Consensus 330 ~~~~~~ 335 (904)
.+++.+
T Consensus 309 K~kde~ 314 (613)
T KOG0992|consen 309 KAKDEI 314 (613)
T ss_pred HHHHHH
Confidence 333333
No 311
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=75.46 E-value=26 Score=37.29 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=41.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhh---hHHHHhh-hhHHHHHHHHHHHHHHhhhh
Q 002589 315 STLKVECKDLYEKVENLQGLLAKATKQAD---QAISVLQ-QNQELRKKVDKLEESLDEAN 370 (904)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (904)
..|+.|...|.++.+.++.-|.-|++-+| .++-|+. .++.+..+++.++.+|.+|.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556788888888888888777666 4555554 67888889999999999883
No 312
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.29 E-value=2.2e+02 Score=35.32 Aligned_cols=71 Identities=32% Similarity=0.373 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhH--------HHHhhh----hHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 002589 323 DLYEKVENLQGLLAKATKQADQA--------ISVLQQ----NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (904)
.+...||.|...|.+++--.+++ .++|.| ++.|-..|..+++|+.+.- .-+...|++.+..+..+.
T Consensus 253 ~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~--e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 253 FLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER--EKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 35566667777766665433333 444443 3445555666666665432 223344445555555554
Q ss_pred HHHHH
Q 002589 391 KLLEE 395 (904)
Q Consensus 391 ~~~~~ 395 (904)
.-+|+
T Consensus 331 ~~lee 335 (629)
T KOG0963|consen 331 SELEE 335 (629)
T ss_pred HHHHH
Confidence 44443
No 313
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.22 E-value=6 Score=40.35 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=41.4
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh------hhHHHHHHhhhhhHHhhHHHHHh
Q 002589 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA------DERVVMLEMERSSLESSLKELES 302 (904)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 302 (904)
+..+..+..++..|++|...|+.++..|+++|...... ...+..|++|...|++.|..|.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888888888888888876533 34445555555555555555543
No 314
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=75.18 E-value=1.5e+02 Score=33.42 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.2
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCC
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM 558 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~~l 558 (904)
|||.-|+.. .-|...-+..|+..|.+ .++++..-.|.++
T Consensus 1 ~ki~aisD~------RtGnt~QaiaLa~~l~r--~eyttk~l~~~~l 39 (329)
T COG3660 1 MKIWAISDG------RTGNTHQAIALAEQLTR--SEYTTKLLEYNNL 39 (329)
T ss_pred CceEEeecC------CCccHHHHHHHHHHhhc--cceEEEEeecccc
Confidence 788888762 34666777788888876 5777776666553
No 315
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.86 E-value=42 Score=41.83 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002589 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (904)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
++..+.||.++...+.+|+++.++|--.+.-|
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~ 806 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGRMSDA 806 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999986544444
No 316
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.19 E-value=1.2e+02 Score=35.32 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHhhh-hhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002589 352 NQELRKKVDKLEESLDEA-NIYKLSSEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
-++|+.++..++..|.+. ..|.-..-+++. ++.++..++..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~----l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKR----AQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHHH
Confidence 357888888888888875 457777776654 344444444444
No 317
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.06 E-value=56 Score=38.71 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (904)
+.++.|++++...|.+-. .-..+|++-.+..++|+|.+|++..+ .++-+...|.+.|.-|.+
T Consensus 385 ~q~q~k~~k~~kel~~~~---E~n~~l~knq~vw~~kl~~~~e~~~~-------~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEER---EENKKLIKNQDVWRGKLKELEEREKE-------ALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 345556666655554432 22344555556677777777777543 233344444444444444
No 318
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.95 E-value=2e+02 Score=34.71 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccch
Q 002589 376 SEKMQQYNELMQQKMKLLEERLQRSD 401 (904)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (904)
.+.|.+...=++++++.++.+++.+.
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555567777777777777554
No 319
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.77 E-value=1.8e+02 Score=36.58 Aligned_cols=94 Identities=23% Similarity=0.226 Sum_probs=52.9
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccc
Q 002589 167 EKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (904)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (904)
..-.+|..+..+.|.|.+....++.+...+-- ....+..++.+........... ...+
T Consensus 108 ~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 165 (670)
T KOG0239|consen 108 LLSELQSNLSELNMALLESVEELSQAEEDNPS---IFVSLLELAQENRGLYLDLSKV-------------------TPEN 165 (670)
T ss_pred hccccccchhhhhhhhhhhhHhhhhhhccccc---HHHHHHHHHhhhcccccccccc-------------------chhh
Confidence 34456777888888888887766655443332 2233555555554432221110 1111
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (904)
..+ .++....+...+-+|+..+.++|..|.++.++.
T Consensus 166 ~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 166 SLS-LLDLALKESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred hHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 333444556667778888888888888776653
No 320
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=73.62 E-value=2e+02 Score=34.09 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=64.8
Q ss_pred hhhHhhhhhhhhhccch----hHHHHHHHHhhhhhhhhhHHHHHHhhhh-------hHHhhHHHHHhhhhcchhhhhccc
Q 002589 247 SFSKELDSLKTENLSLK----NDIKVLKAELNSVKDADERVVMLEMERS-------SLESSLKELESKLSISQEDVAKLS 315 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (904)
+|+..++.||-|-.-|. ..-+|+..+|- ..+.+||.+-- .|.-.--+||-++..-|+-+..
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm------~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN-- 204 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLM------NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN-- 204 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH--
Confidence 56778888886654443 33345544443 23333333321 2444445677777666665432
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHh---------------------hhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002589 316 TLKVECKDLYEKVENLQGLLAKAT---------------------KQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (904)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (904)
.||.+...|..=-+-.. ..-|.|....-.-+-||..|..|..-|..|- |-
T Consensus 205 -------~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq--k~ 275 (552)
T KOG2129|consen 205 -------SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ--KS 275 (552)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 47877776654322222 2334454444555666777777777776653 44
Q ss_pred chHHHHHH
Q 002589 375 SSEKMQQY 382 (904)
Q Consensus 375 ~~~~~~~~ 382 (904)
-.+|++||
T Consensus 276 ~~ek~~qy 283 (552)
T KOG2129|consen 276 YQEKLMQY 283 (552)
T ss_pred HHHHHHHH
Confidence 56666665
No 321
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.40 E-value=75 Score=32.18 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002589 155 VQALEDLHKILQEKEALQGEINALEMRLAET 185 (904)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (904)
.+..+.|..+-.++.-|+..|--||.-|..+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777766443
No 322
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.27 E-value=23 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=6.8
Q ss_pred HhhhhhhhhhccchhHHH
Q 002589 250 KELDSLKTENLSLKNDIK 267 (904)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (904)
+|++.+.+.+..+..++.
T Consensus 95 ~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 95 EELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 323
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=73.24 E-value=1.3e+02 Score=35.47 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=52.5
Q ss_pred Hhhhh-HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhh
Q 002589 348 VLQQN-QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSL 425 (904)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (904)
++++. +.|.+++..++.-+...+ ..|+++-.|+-+++..-.-..++++.|++. +.+++.
T Consensus 346 ~l~~~~~~L~~~~~~l~~~~~~~~--------------~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~----- 406 (458)
T COG3206 346 LLEQQEAALEKELAQLKGRLSKLP--------------KLQVQLRELEREAEAARSLYETLLQRYQELSIQEASP----- 406 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhch--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----
Confidence 34443 777777777776665543 234455555555665555666677777766 333222
Q ss_pred HhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHH
Q 002589 426 KEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEA 467 (904)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a 467 (904)
-..-+..+.++--..+.+=...+..+-|+++..+++..=|
T Consensus 407 --~~n~rvIs~A~~P~~p~~Pk~~l~l~~g~~~G~~~g~~~a 446 (458)
T COG3206 407 --IGNARVISPAVPPLSPSKPKKALILALGGVLGLFLGLGAA 446 (458)
T ss_pred --CCceeEeccccCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333332222222344446778877776665544
No 324
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=72.95 E-value=1.8e+02 Score=33.33 Aligned_cols=64 Identities=27% Similarity=0.266 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhh
Q 002589 143 AEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELT 214 (904)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (904)
+|+-|-.|-+--++..+..-+++.+-.-||.+ -+|..+.++-.|.-..+++..+-||.|=.||-
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k--------~~t~~kek~~~Q~l~kt~larsKLeelCRelQ 86 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVLQVK--------DLTEKKEKRNNQILLKTELARSKLEELCRELQ 86 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555555555555555444443 24555666667766666777777777666654
No 325
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.71 E-value=40 Score=38.25 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=28.3
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (904)
...|...++.|+.+...|..+++-+..-+. +..++...|..|...|.+...+++
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKP---KLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555666666666666665555543322 233444555555555555544444
No 326
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.57 E-value=2.4e+02 Score=34.57 Aligned_cols=172 Identities=17% Similarity=0.300 Sum_probs=93.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc----chhhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST----LKVECK 322 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 322 (904)
.+..-++-+++.|..|+..++.++..-.--.+-.+....++++...++.....+..++..-+.--|.+.. +.-.+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 5677788889999999999999988664444455566777777777777776666665554433332211 111111
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccch-
Q 002589 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD- 401 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (904)
.+-+....+...|+...+.-..|-- +=+.++.++...+-.++..|+-.++.+-++ +-.....++..+.+.+...-
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~---~l~~~~~~l~~ikR~lek~nLPGlp~~y~~-~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEARE---KLQKLKQKLREIKRRLEKSNLPGLPEDYLD-YFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHHHHHHHHHhcCCc
Confidence 2222222222222222222222211 113455566666666777777777655333 33445566666666665443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH
Q 002589 402 --EEIHSYVQLYQESVKEFQDTL 422 (904)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~~~~ 422 (904)
.+|..++..=...|..+.+..
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~~t 488 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEEKT 488 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554433
No 327
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=72.51 E-value=26 Score=38.88 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCC-cHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 526 KVG-GLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 526 kvG-GLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
..| |-......++++|.+ ||+|.+++..
T Consensus 8 g~G~GH~~r~~ala~~L~~-g~ev~~~~~~ 36 (321)
T TIGR00661 8 GEGFGHTTRSVAIGEALKN-DYEVSYIASG 36 (321)
T ss_pred ccCccHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 357 888999999999999 9999999744
No 328
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.86 E-value=1.9e+02 Score=37.24 Aligned_cols=259 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HhhhhhhHHHhhhhchhhhhhhhhhh---hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccc
Q 002589 170 ALQGEINALEMRLAETDARIRVAAQE---KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (904)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (904)
+.|...|+|.--.-.-.-+.|..++- .+++..+-.|+++|+.+|......
T Consensus 300 n~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~--------------------------- 352 (913)
T KOG0244|consen 300 NAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGD--------------------------- 352 (913)
T ss_pred hhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh------------------hHHHHHHhhhhh----------------
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD------------------ERVVMLEMERSS---------------- 292 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---------------- 292 (904)
.+..|+++|++||+.|..++..+-.++.+.-.+- .++-+.-..-..
T Consensus 353 ~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 432 (913)
T KOG0244|consen 353 ELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKP 432 (913)
T ss_pred cchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcc
Q ss_pred ---------------------------------------HHhhHHHHHhhhhcchhhhhcccc-----------------
Q 002589 293 ---------------------------------------LESSLKELESKLSISQEDVAKLST----------------- 316 (904)
Q Consensus 293 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----------------- 316 (904)
|...|++++.++..-++-+-+...
T Consensus 433 ~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~ 512 (913)
T KOG0244|consen 433 LEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSG 512 (913)
T ss_pred ccccccccccccccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhh
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHhh-hhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 002589 317 -LKVECKDLYEKVENLQGLLAKATK-QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (904)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (904)
|..|-.++...-+.|..-|...+. .+-.+=---++-++|+.++++|+.-|.+-.----...+.....-.+.+.+.-++
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k 592 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAK 592 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHH
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhh
Q 002589 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDG 455 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~ 455 (904)
...-.--..+..-=.+++..-..--..+.-+|+..-++...++...+........|.|-+.
T Consensus 593 ~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~ 653 (913)
T KOG0244|consen 593 GQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTE 653 (913)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHH
No 329
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=71.85 E-value=1.4e+02 Score=31.55 Aligned_cols=147 Identities=29% Similarity=0.362 Sum_probs=86.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhh--------------HHHhhhhchhhhhhhhhhhhh
Q 002589 136 LISMIRNAEKNILLLNEARVQALEDLHKILQ----EKEALQGEIN--------------ALEMRLAETDARIRVAAQEKI 197 (904)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 197 (904)
+|..++|...=|.-|-=-|.+|-+.+..+=. -|+.||.+.+ .|...|+-++ .
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAE----------t 71 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAE----------T 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHH----------H
Confidence 4566777777777777777777776655433 3445543332 3334443333 3
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 002589 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (904)
+.-+||.||+-.|+-+.+.... .+.+ +-.. .+|..|.. .| -.++.
T Consensus 72 RCslLEKQLeyMRkmv~~ae~e----------------------r~~~--le~q-~~l~~e~~---~~-------~~~~~ 116 (178)
T PF14073_consen 72 RCSLLEKQLEYMRKMVESAEKE----------------------RNAV--LEQQ-VSLQRERQ---QD-------QSELQ 116 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------hhHH--HHHH-HHHHHHhc---cc-------hhhHH
Confidence 4559999999999887763111 0100 0111 11222211 11 22334
Q ss_pred hhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002589 278 DADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (904)
Q Consensus 278 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (904)
..-+.+.+||+|+..| +..+++||.||..- +-..|-+.||.+.||--|+.
T Consensus 117 ~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE----------ehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE----------EHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHH
Confidence 4557788888888775 57788999887543 23456678999999887764
No 330
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=71.81 E-value=9.5 Score=34.50 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (904)
.....++.|+.||-.||=.|-||...|...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999843
No 331
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.74 E-value=27 Score=41.21 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=30.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (904)
+..+.+|+..+||+|+.|..+....+.++.+..+..+
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3356888999999999999999999999887776654
No 332
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=71.55 E-value=2.3 Score=38.07 Aligned_cols=31 Identities=16% Similarity=-0.041 Sum_probs=26.7
Q ss_pred eEEEcCCCCCChHHHHHHccCCcccccCCCc
Q 002589 865 SFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 895 (904)
Q Consensus 865 VfVlPS~~EpFGLv~LEAMg~gl~V~~~v~~ 895 (904)
|++.|+...+++...+|+||+|+||+..-++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~ 31 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSP 31 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChH
Confidence 5688999999999999999999999766543
No 333
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.46 E-value=27 Score=43.76 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 002589 284 VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE 363 (904)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (904)
..|+.+.+.++..+++|..++....-.| ..+-.+...|+..++....+..+.-..-.+..+|++.++-.+
T Consensus 314 ~~l~~ql~~l~~~~~~l~~~~~~~hP~v----------~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 314 VNVDNQLNELTFREAEISQLYKKDHPTY----------RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchH----------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555443333222 234445566666666666666555555555666666666555
Q ss_pred H
Q 002589 364 E 364 (904)
Q Consensus 364 ~ 364 (904)
+
T Consensus 384 ~ 384 (726)
T PRK09841 384 A 384 (726)
T ss_pred H
Confidence 4
No 334
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.14 E-value=1.7e+02 Score=32.37 Aligned_cols=176 Identities=20% Similarity=0.325 Sum_probs=83.5
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHh----hHHHHHhhhhcchhhhhccc-cchh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLES----SLKELESKLSISQEDVAKLS-TLKV 319 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (904)
...+......+..+..+|..|+..+++. .+-+.++..|..|...+.. .+++|.+++. ...-+ ... +-.
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~-e~~~~~~- 164 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTV-EVDQFRS- 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-cccce-eeccccc-
Confidence 3444445666777777777777766643 2345567777777766543 4555665553 11111 111 111
Q ss_pred hhhhHHHHHHHHHHHHH----HHhhhhhhHHHHhhhhHHHHHHHHHHHHHH----hhhhhhhhchHHHHHHHHHHHHHHH
Q 002589 320 ECKDLYEKVENLQGLLA----KATKQADQAISVLQQNQELRKKVDKLEESL----DEANIYKLSSEKMQQYNELMQQKMK 391 (904)
Q Consensus 320 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (904)
.+|-..+..+++-.+ +....++.. .=.+-.+++..+.+-.+.+ ++..-.+.....++.-.+-++.+..
T Consensus 165 --~dL~~~L~eiR~~ye~~~~~~~~e~e~~--y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 165 --SDLSAALREIRAQYEEIAQKNREELEEW--YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchhhhhhHHHHHHHHHhhhhhhhhhh--cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 123333333333222 222222211 1112223333333322222 2222233333444444455666777
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
.||.++..-.......++.|+..|.....-|..++.+-..
T Consensus 241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 7777777766666666677777666666666666655444
No 335
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.33 E-value=94 Score=36.68 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 002589 324 LYEKVENLQGLLAKATKQAD 343 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (904)
+...+..|+..++.+..+..
T Consensus 241 ~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 241 IQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556666666665544433
No 336
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=70.24 E-value=5.6 Score=41.97 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.6
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCCC
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYD 556 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y~ 556 (904)
||||+....- =-+.-+..|.++|.+.||+|.|++|...
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 8999888752 2245678899999888999999999865
No 337
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.70 E-value=39 Score=36.69 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=10.1
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHh
Q 002589 279 ADERVVMLEMERSSLESSLKELES 302 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (904)
+.+++..+..|+..|...++.|+.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~ 63 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLER 63 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 338
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.58 E-value=51 Score=32.98 Aligned_cols=42 Identities=38% Similarity=0.441 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH---HHHHHHHH
Q 002589 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK---VDKLEESL 366 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 366 (904)
.+..+.....+-+.+..+.+.+- --+..+++++| +++|++.|
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~--~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQR--KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444443333333 22456677764 56666555
No 339
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=69.36 E-value=95 Score=33.73 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=54.1
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002589 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (904)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (904)
.-.|+-.++|+++.|..+-.-+.++-..+.. +..+++.++...++-.++|..| +...|.+|-+++=.=+.+|+
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~---~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQ---LERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHH
Confidence 3568888999999999998888888887774 8888888888888888888887 45555555555444333333
No 340
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.10 E-value=60 Score=36.95 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=36.7
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002589 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (904)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (904)
--.+..+..+.+.|+..+.+...++..+.. ..+.....+...|--.++.-+.+++.+..+.++|
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666677766666666654432 2344444455556566666666665555555554
No 341
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.69 E-value=1.6e+02 Score=30.54 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.3
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (904)
-.+++.++.|+..|+.|++.|+++|.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888899999888888766
No 342
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.66 E-value=73 Score=35.40 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.4
Q ss_pred HCCCeEEEEeeCCC
Q 002589 543 KKGHLVEIVLPKYD 556 (904)
Q Consensus 543 k~GHeV~VItP~y~ 556 (904)
+.|..|.|-++.|+
T Consensus 256 ~~G~~v~v~~~~~~ 269 (334)
T TIGR00998 256 RIGQPVTIRSDLYG 269 (334)
T ss_pred CCCCEEEEEEecCC
Confidence 56888888876655
No 343
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.61 E-value=88 Score=36.43 Aligned_cols=125 Identities=26% Similarity=0.322 Sum_probs=79.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (904)
.+..-+..++.+=..+.++|.....+...... ..+.+......-..|-..+.++.++-..++.-|.++ |++.
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i------t~dI- 94 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI------TRDI- 94 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-
Confidence 33444455555555556666555444443222 234444444444556666666666666666665443 3333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM 386 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (904)
.-||.|.+..-++|.+|+.=|-|-.-|++|+..+.. .-|+....-++-.++++
T Consensus 95 -------k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 95 -------KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQYKEIASLLQAVKELL 147 (383)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 248999999999999999999999999999998875 45666665555444444
No 344
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.96 E-value=3.3e+02 Score=35.57 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=53.8
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh----------hHHHHh
Q 002589 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD----------QAISVL 349 (904)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 349 (904)
...+..=++.|......|++++++....+...+++.|.-- ++-++-..+..-|..++++.. |--..=
T Consensus 313 q~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~---~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 313 QDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYN---SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3444555667777888899999999988888888777544 466666666665655554322 111222
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 002589 350 QQNQELRKKVDKLEESLDEA 369 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~ 369 (904)
..+--+|..+.+|...+...
T Consensus 390 eRDkwir~ei~~l~~~i~~~ 409 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDT 409 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444666666666655443
No 345
>PRK10698 phage shock protein PspA; Provisional
Probab=66.87 E-value=1.4e+02 Score=32.35 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH-HHHHHHHHhhh
Q 002589 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK-VDKLEESLDEA 369 (904)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 369 (904)
..|+-.++|||..+......+...-..+ +.+-.+++.++...++-..+|..| +-..+.||-++ +.+=...-+.+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~---k~~er~~~~~~~~~~~~e~kA~~A--l~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEK---KQLTRRIEQAEAQQVEWQEKAELA--LRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777766665544433 346667777777777766677766 44456666554 11112222333
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002589 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (904)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
.-++-..+..+...+.|++++..|+..+...-..=..++-.|+
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556666666666666666665555555554443
No 346
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=66.68 E-value=87 Score=36.44 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh
Q 002589 327 KVENLQGLLAKATKQADQAISVLQQ 351 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (904)
.++.+++-+..+..+..++-.-+..
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~ 252 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNL 252 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555556666666666666555544
No 347
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.24 E-value=57 Score=35.41 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=25.9
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh-----hhhHHHHHHhhhhhHHhhHHHHHhh
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKD-----ADERVVMLEMERSSLESSLKELESK 303 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (904)
|..++.+...++.+.+.|+.++.+.-+ .-..+..+..|...++..+..|..+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 78 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRER 78 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666666555544 3334444444444444444444333
No 348
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.12 E-value=2.4e+02 Score=35.98 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhh-----------hhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 002589 351 QNQELRKKVDKLEESLDEANIY-----------KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQ 409 (904)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (904)
++|+++.+..++++...+-.-+ +-.+-.+-..+....||.-.|-++++.-+++|...-+
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltE 876 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTE 876 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 4666666666666544321111 1112233445677788888888888888888876443
No 349
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.87 E-value=2.9e+02 Score=33.01 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc------hHHHHHHHHHHHHHHHHHHHhh
Q 002589 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS------SEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
+-+....+..+++.....-++....++.-++++..+.+..+.+.....---+ .+-..+-.+-.++++..+++-+
T Consensus 361 ~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~ 440 (503)
T KOG2273|consen 361 LAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELL 440 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444445555566666665555443332221111 1122223333445555555444
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 002589 398 QRSDEEIHSYVQLYQESVKEFQD 420 (904)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
....-++....+.....+++|..
T Consensus 441 ~~~~~~~~~i~~~~~~e~~~f~~ 463 (503)
T KOG2273|consen 441 ALKELELDEISERIRAELERFEE 463 (503)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555554
No 350
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.80 E-value=25 Score=41.15 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (904)
..+..+.+|+..+|++...|..+++.||.++
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999854
No 351
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.73 E-value=1.9e+02 Score=30.79 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 002589 326 EKVENLQGLLAKATKQ 341 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~ 341 (904)
.|+.+|...|++...|
T Consensus 150 kKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 352
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=65.62 E-value=7.5 Score=38.08 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=27.0
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
|||+++.. |+....--.+....|..+.+++||+|.++.|.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 89999965 54333333577888999999999999999887
No 353
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.82 E-value=49 Score=38.38 Aligned_cols=147 Identities=21% Similarity=0.281 Sum_probs=79.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH--hhhhcchhhhhcc-ccchhhhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE--SKLSISQEDVAKL-STLKVECKD 323 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 323 (904)
++.+.|..|+-|=..|+++++..|..-...++....-..+...-..|...|..|. .-+.. .-+..+ ++-...++.
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~--~~~~~~~~~~~~~~~k 168 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGE--ETAQDLSDPQKALSKK 168 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccch--hhhcccccchhhHHHH
Confidence 6788899999888888888888876544443222222334455555666666661 11111 111111 122233344
Q ss_pred HHHHHHHHHHHHHHHhhhh-------------h-hHHHHhhhhHHHHHHHHHHHHHHhhhh--hhhh----chHHHHHHH
Q 002589 324 LYEKVENLQGLLAKATKQA-------------D-QAISVLQQNQELRKKVDKLEESLDEAN--IYKL----SSEKMQQYN 383 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~ 383 (904)
+-..++.++.--..+.... + .....+.+=-+|.+.+-.||..|.-.. ...+ .+-.|..-.
T Consensus 169 l~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l 248 (388)
T PF04912_consen 169 LLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPAL 248 (388)
T ss_pred HHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHH
Confidence 4444444431110000000 0 112346667789999999999998711 1122 234566677
Q ss_pred HHHHHHHHHHHH
Q 002589 384 ELMQQKMKLLEE 395 (904)
Q Consensus 384 ~~~~~~~~~~~~ 395 (904)
+.|++|+.+|..
T Consensus 249 ~~L~~~lslL~~ 260 (388)
T PF04912_consen 249 NELERQLSLLDP 260 (388)
T ss_pred HHHHHHHHhcCH
Confidence 889999999853
No 354
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.64 E-value=2.3e+02 Score=31.29 Aligned_cols=67 Identities=10% Similarity=0.408 Sum_probs=46.7
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHh
Q 002589 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHS 424 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 424 (904)
|+.+.+..|-.++++++-|... .++ .+.+.+.++.+|++++..++.|..=++.++.. +..|..++.+
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~-----~~d-----r~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANK-----KAD-----RDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTD 221 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777666652 232 35888899999999999999988766666555 5555555554
No 355
>PRK11519 tyrosine kinase; Provisional
Probab=63.89 E-value=50 Score=41.36 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002589 286 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (904)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (904)
++.+.+.++..+.+|.+++......|- .+-++...|+..++....+....-..-++.++|+++++-.++
T Consensus 316 l~~ql~~l~~~~~~l~~~y~~~hP~v~----------~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 316 IDAQLNELTFKEAEISKLYTKEHPAYR----------TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHH----------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554443333332 233444556666665555554444444555666666665554
No 356
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=63.81 E-value=80 Score=39.89 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=72.3
Q ss_pred CeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHh
Q 002589 757 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 836 (904)
Q Consensus 757 ~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLRk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarL 836 (904)
..+..+|=|+|...|..... + .|. ..-...++..++ ++.+++.+-|+..-||+..=+.|+.++
T Consensus 239 ~~v~~~pigid~~r~v~~~~--~--~~~-------~~~~~ei~~~~~------g~klilgvD~~d~~kg~~~Kl~a~e~~ 301 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLE--L--PYV-------GSKGMEIKEPFK------GKKLILGVDRLDSIKGIQLKLLAFEQF 301 (732)
T ss_pred eeeeecccccchHHhhcccc--c--hhH-------HHHHHHHhhhcc------CCceEecccccccccCchHHHHHHHHH
Confidence 34667788888876643210 0 010 111234444442 557899999999999999989999988
Q ss_pred hcC------CcEEEEEecC---CcccccH--------------H----------------------HHHHhcCeEEEcCC
Q 002589 837 LEL------GGQFILLGSS---PVPHIQV--------------Y----------------------PILLSSFSFLRKHI 871 (904)
Q Consensus 837 le~------nvqLVLVGdG---p~~~lek--------------e----------------------~LyAaADVfVlPS~ 871 (904)
+.. .+.++.+..+ +...+++ + ++|+.+|++++-|.
T Consensus 302 L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~ 381 (732)
T KOG1050|consen 302 LEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW 381 (732)
T ss_pred HHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc
Confidence 752 3444444321 2111110 0 99999999999999
Q ss_pred CCCChHHHHHHc
Q 002589 872 FNICNLYIKLGQ 883 (904)
Q Consensus 872 ~EpFGLv~LEAM 883 (904)
-++..++.+|..
T Consensus 382 rdGmnl~~~e~i 393 (732)
T KOG1050|consen 382 RDGMNLVFLEYI 393 (732)
T ss_pred ccccchhhhHHH
Confidence 999999999887
No 357
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.63 E-value=48 Score=32.69 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002589 287 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (904)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (904)
+++|..+...|-.|-......++-..++..|+.+++++-.+-+++-.||..
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444433333333333333333444444555555555555555555554
No 358
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=62.79 E-value=13 Score=34.63 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=55.3
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
+...|++.+.+.=...+.|++..-..|....-++|.-..||+|...|.+.+...|.+|..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999988764
No 359
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.43 E-value=1.5e+02 Score=37.32 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002589 384 ELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (904)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
..|+..+|..||+.+.--.++. .++.|
T Consensus 555 ~~lr~elk~kee~~~~~e~~~~-~lr~~ 581 (697)
T PF09726_consen 555 KKLRRELKQKEEQIRELESELQ-ELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444555555555555555552 24444
No 360
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=62.28 E-value=9.4 Score=36.40 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
+|==.=...|+++|+++||+|.+.++.
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 444344568899999999999988865
No 361
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.92 E-value=37 Score=33.48 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=39.9
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (904)
|+.+--|+..++.|+..|...=..+..++......-+.+....++...|+..+++|+.|...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555666666666666666666777777777777777776543
No 362
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.52 E-value=1e+02 Score=31.86 Aligned_cols=95 Identities=24% Similarity=0.351 Sum_probs=62.6
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 002589 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (904)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (904)
=.+..|.|.-.++.+++.+|.++..+-+ .+-.|++.--.....|.+.-..|..-- +.|-+.-|+++..
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~---evD~Le~~er~aR~rL~eVS~~f~~ys---------E~dik~AYe~A~~ 88 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIE---EVDKLEKRERQARQRLAEVSRNFDRYS---------EEDIKEAYEEAHE 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC---------HHHHHHHHHHHHH
Confidence 3456788888899999999988776554 455566666666677777666664322 2355689999999
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002589 331 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (904)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (904)
+|..|.-...+- ..||.+-|.||-.|.
T Consensus 89 lQ~~L~~~re~E----------~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 89 LQVRLAMLRERE----------KQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 999887644333 334555555554443
No 363
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.46 E-value=30 Score=39.16 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=8.8
Q ss_pred CcHHHHHHHHHHHHHHCCC
Q 002589 528 GGLGDVVAGLGKALQKKGH 546 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GH 546 (904)
.|.|..+.-|..-..+.|.
T Consensus 173 AA~Gq~~LLL~~la~~l~~ 191 (314)
T PF04111_consen 173 AAWGQTALLLQTLAKKLNF 191 (314)
T ss_dssp HHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3455555544444444553
No 364
>PF13166 AAA_13: AAA domain
Probab=60.92 E-value=3.6e+02 Score=33.51 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhc
Q 002589 355 LRKKVDKLEESLDEANIYKLS 375 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (904)
+.++.++++..+....++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~ 409 (712)
T PF13166_consen 389 LKKEQNELKDKLWLHLIAKLK 409 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444443
No 365
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.38 E-value=1.2e+02 Score=34.22 Aligned_cols=13 Identities=8% Similarity=-0.021 Sum_probs=8.4
Q ss_pred HCCCeEEEEeeCC
Q 002589 543 KKGHLVEIVLPKY 555 (904)
Q Consensus 543 k~GHeV~VItP~y 555 (904)
+.|..|.|....+
T Consensus 260 ~~Gq~v~i~~~~~ 272 (346)
T PRK10476 260 RVGDCATVYSMID 272 (346)
T ss_pred CCCCEEEEEEecC
Confidence 4678888765443
No 366
>PF13514 AAA_27: AAA domain
Probab=60.31 E-value=5.4e+02 Score=34.18 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=38.1
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 002589 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (904)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (904)
...++|+.|...+..+......+-.++.|...+...+..+..+|-
T Consensus 283 ~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 283 AHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346778888888888888888888899999999888888888887
No 367
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.06 E-value=2.9 Score=53.13 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 002589 282 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 361 (904)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (904)
....+|++|..|+..++||-.+|..+-....+-+.-.+ ..|=.+|..|+.-|+.-.. .+.+..+.+-+
T Consensus 708 ~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i--~kLE~ri~eLE~~Le~E~r----------~~~~~~k~~rk 775 (859)
T PF01576_consen 708 HNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQI--AKLEARIRELEEELESEQR----------RRAEAQKQLRK 775 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHH--HHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 45568999999999999999999988877766543333 2455788899988887333 23344444444
Q ss_pred HHHHHhhhhh----hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002589 362 LEESLDEANI----YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (904)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
++..+++... .+-..+.+|...+.|+.|+|.+...+...-++.......|.
T Consensus 776 ~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~R 830 (859)
T PF01576_consen 776 LERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYR 830 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444444422 23334556777889999999999999988888877766664
No 368
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.04 E-value=1.7e+02 Score=31.21 Aligned_cols=106 Identities=15% Similarity=0.205 Sum_probs=64.8
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHHHhhh
Q 002589 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEA 369 (904)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 369 (904)
..|+-.++||+..+..+...+...-..+. -+-.+++.++...++-.++|..| +-..+.||-+.. .+-...-+.+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k---~~e~~~~~~~~~~~~~~~~A~~A--l~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKK---ELERRVSRLEAQVADWQEKAELA--LSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888777665544 35567777777777777777777 445566665543 2222223334
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccch
Q 002589 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSD 401 (904)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (904)
..++.+-+.++...+.|+.++..|+..++..-
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555666666666665555443
No 369
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.95 E-value=65 Score=37.83 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 002589 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 339 (904)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (904)
.+.|..||++|. .++|++.-.--||+. |+||.+|+.|.=+.+..
T Consensus 275 q~Ei~~LKqeLa---~~EEK~~Yqs~eRaR------------------------------di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELA---SMEEKMAYQSYERAR------------------------------DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHHHHHH
Confidence 345667777664 456777777777753 67777777777666655
No 370
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.52 E-value=4.6e+02 Score=33.10 Aligned_cols=229 Identities=21% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchh
Q 002589 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSF 248 (904)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (904)
+..++.-+-+.|-++-.-+.+..+-. .-|-+++|....++..-.-+....+
T Consensus 54 ~s~n~~~~s~~~~~~~~l~~Lqns~k------r~el~~~k~~~i~~r~~~~~~dr~~----------------------- 104 (716)
T KOG4593|consen 54 RSENITSKSLLMQLEDELMQLQNSHK------RAELELTKAQSILARNYEAEVDRKH----------------------- 104 (716)
T ss_pred hhccchhHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEK 327 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (904)
+.+..|+.+-..+|.-=+.++.++-.+. +-.........=|-.++.++.+|+-..-..- +.++.++-+|+..=++
T Consensus 105 -~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~d---ss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 105 -KLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLD---SSLSELQWEVMLQEMR 180 (716)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhh-hhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 002589 328 VENLQGLLAKATKQ-ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (904)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (904)
+..+-..+.+-.++ ..++.-.=..+|.++.+.+.|++.-..--+-+-.-+++...+++=....+-- +++|.--+.+.+
T Consensus 181 ~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~-dqlqel~~l~~a 259 (716)
T KOG4593|consen 181 AKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMK-DQLQELEELERA 259 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHH
Q ss_pred HHHHHHHH--HHHHHHHHHhhHhhhhh
Q 002589 407 YVQLYQES--VKEFQDTLHSLKEESKK 431 (904)
Q Consensus 407 ~~~~~~~~--~~~~~~~~~~~~~~~~~ 431 (904)
+-+.-... ..+-+++...|++|-++
T Consensus 260 ~~q~~ee~~~~re~~~tv~~LqeE~e~ 286 (716)
T KOG4593|consen 260 LSQLREELATLRENRETVGLLQEELEG 286 (716)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
No 371
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.58 E-value=26 Score=36.68 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh
Q 002589 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR 190 (904)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (904)
+.....-++|......+..++.++..+...|.+.++.+.
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~ 112 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS 112 (194)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhhhhHH
Confidence 344455577778888888888888888877777766544
No 372
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.37 E-value=3.2e+02 Score=31.77 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=9.9
Q ss_pred HCCCeEEEEeeCCC
Q 002589 543 KKGHLVEIVLPKYD 556 (904)
Q Consensus 543 k~GHeV~VItP~y~ 556 (904)
+.|-.|.|....|+
T Consensus 309 ~~G~~v~v~~~~~~ 322 (421)
T TIGR03794 309 RPGMSVQITPSTVK 322 (421)
T ss_pred CCCCEEEEEEcccc
Confidence 56778888866554
No 373
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=58.37 E-value=23 Score=40.16 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=43.9
Q ss_pred cEEEEEecccCccCHHHHHHHHHHhhcCCcEEEE-EecCCcc-cc-------------cHHHHHHhcCeEEEcCCCCCCh
Q 002589 812 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQFIL-LGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNICN 876 (904)
Q Consensus 812 plVgfVGRL~~qKGIdlLIeAiarLle~nvqLVL-VGdGp~~-~l-------------eke~LyAaADVfVlPS~~EpFG 876 (904)
++++..|.+..... ..+..++..+.+.+.++++ +|.+... .+ ....+|+.||++|..+-+
T Consensus 227 ~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~---- 301 (392)
T TIGR01426 227 VVLISLGTVFNNQP-SFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAFITHGGM---- 301 (392)
T ss_pred EEEEecCccCCCCH-HHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEEEECCCc----
Confidence 34566777644332 2333333333344666655 5655321 11 113899999999987743
Q ss_pred HHHHHHccCCcccc
Q 002589 877 LYIKLGQGGDLTVN 890 (904)
Q Consensus 877 Lv~LEAMg~gl~V~ 890 (904)
.+.+||+.+|+|++
T Consensus 302 ~t~~Eal~~G~P~v 315 (392)
T TIGR01426 302 NSTMEALFNGVPMV 315 (392)
T ss_pred hHHHHHHHhCCCEE
Confidence 37899999998884
No 374
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.24 E-value=34 Score=37.57 Aligned_cols=107 Identities=24% Similarity=0.364 Sum_probs=69.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhh--hhh--hchHHHHHHHHHHHHHHHHHHHhhc------------------------
Q 002589 347 SVLQQNQELRKKVDKLEESLDEAN--IYK--LSSEKMQQYNELMQQKMKLLEERLQ------------------------ 398 (904)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 398 (904)
+|-.|-.-+|.++-.||+.|.... +.+ --.+++|.=|.-|=+|++=|..-=.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPG 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCCCCC
Confidence 467888889999999999886543 222 2345677777788888887754332
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccC
Q 002589 399 -RSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLS 463 (904)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~ 463 (904)
.+|.+...|=+.|.+++.=|..-= +.|.++. ...|++ |.++++.+=++||....+
T Consensus 163 ~~~d~e~~rY~~~YE~~l~PF~~F~---~~E~~R~-----~~~L~~--~eR~~ls~~r~vL~nr~~ 218 (248)
T PF08172_consen 163 GSSDVESNRYSSAYEESLNPFAAFR---KRERQRR-----YKRLSP--PERIFLSLTRFVLSNRTT 218 (248)
T ss_pred CCCchhHHHHHHHHHhccChHHHHh---HhhHHHH-----HhcCCh--HHHHHHHHHHHHhcChhh
Confidence 245667789999999965443310 1233332 345753 788888777887665544
No 375
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.00 E-value=1.4e+02 Score=35.25 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhhHHHhhhhchhhhhhhhh
Q 002589 153 ARVQALEDL-HKILQEKEALQGEINALEMRLAETDARIRVAA 193 (904)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (904)
++..+.... +-+..+.++|+.++...|++.+.-.++..+..
T Consensus 188 ~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~ 229 (458)
T COG3206 188 AQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD 229 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 344444333 33445667888888888888888777776655
No 376
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.99 E-value=6.3e+02 Score=34.23 Aligned_cols=58 Identities=28% Similarity=0.249 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH----HHhhhhcchhhhhccccch
Q 002589 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE----LESKLSISQEDVAKLSTLK 318 (904)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 318 (904)
..--+|+.+..+|..--+..-.+..+-+|.+.+..++.. +|+..-..+++.-.++-++
T Consensus 799 ~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~ 860 (1294)
T KOG0962|consen 799 LREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLI 860 (1294)
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777555555666677777775555544 4444444444444444433
No 377
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.82 E-value=43 Score=36.22 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.1
Q ss_pred ccchhhHhhhhhhh
Q 002589 244 EIHSFSKELDSLKT 257 (904)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (904)
.+|.+..++..++.
T Consensus 115 R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 115 RLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHh
Confidence 36777778877776
No 378
>PRK10869 recombination and repair protein; Provisional
Probab=57.74 E-value=4.4e+02 Score=32.32 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=29.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002589 373 KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (904)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
.+.++.|...+++|. .+..|+-+..++-+++..|.+..+..++++..
T Consensus 292 ~~dp~~l~~ie~Rl~-~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 292 DLDPNRLAELEQRLS-KQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 455666666666654 45666777777777777776666665554443
No 379
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.33 E-value=16 Score=44.41 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=33.3
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 002589 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (904)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (904)
..|-.|..|...|+.+++.||..|+.|+.+|.......+.-....+|-.-++..+..||.+|.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666666665555444444444444445555555554443
No 380
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.54 E-value=6.1e+02 Score=33.59 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=5.0
Q ss_pred cEEEEEec
Q 002589 812 PLVGCITR 819 (904)
Q Consensus 812 plVgfVGR 819 (904)
..|++|+.
T Consensus 1008 ~~v~iisH 1015 (1047)
T PRK10246 1008 KTIGVISH 1015 (1047)
T ss_pred CEEEEEec
Confidence 45666665
No 381
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=56.47 E-value=2.5e+02 Score=33.67 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=53.2
Q ss_pred HHHhhhhcchhhhhccccchhh----hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002589 299 ELESKLSISQEDVAKLSTLKVE----CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (904)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (904)
--|++|+.|-+ ++||.|++| -.-|-+.-..||.+|..++.-+.-|=-+| -.|.+.=+.+.+.+-
T Consensus 381 G~~~rF~~sla--aEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll----------vrl~eaeea~~~a~~ 448 (488)
T PF06548_consen 381 GAESRFINSLA--AEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL----------VRLREAEEAASVAQE 448 (488)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH----------HHHHhHHHHHHHHHH
Confidence 34566655543 577888774 33455566778888876554433332222 234455455566666
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 002589 375 SSEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
..-..+|.|+.+-++|.-|....
T Consensus 449 r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 449 RAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888887776543
No 382
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.06 E-value=66 Score=31.50 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=32.7
Q ss_pred hccchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002589 259 NLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQ 308 (904)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (904)
+|.++.|...++..+..-.+ .+.++-.|||....|+..+++++++|..+.
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666654433 345677777777777777777777765543
No 383
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.05 E-value=1.1e+02 Score=35.34 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
||+|.+-..++++|.+.||+|+++.+.
T Consensus 105 GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 105 GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 777888889999999999999999753
No 384
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=55.02 E-value=1.6e+02 Score=26.48 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh------ccc
Q 002589 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL------QRS 400 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 400 (904)
.++.++..++...+.-.+......+..++++++|.|-.. +.+....++.+++.++... ..+
T Consensus 15 ~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~-------------i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 15 DIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDE-------------IKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 333333344443333333333333223466666655432 3344455666666666663 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002589 401 DEEIHSYVQLYQESVKEFQDTL 422 (904)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (904)
..+..-.-..|..-...|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 4444444444555577787754
No 385
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=53.87 E-value=6.1e+02 Score=32.79 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=47.8
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHH---HHHHH----HHHHHHHHHHHHh--------hhhhhHHHh-----hhhchhhh
Q 002589 129 STSQLDNLISMIRNAEKNILLLNEA---RVQAL----EDLHKILQEKEAL--------QGEINALEM-----RLAETDAR 188 (904)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~ 188 (904)
-..-....-+|+-|..+|.-.--+. |-.-+ ++++++-.++|+- |.+..+.|+ -..|..++
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888888876544332 22223 3455555444432 233333332 23344555
Q ss_pred hhhhhhhhhhHhhhHHHHHHHH-HHhhhcccC
Q 002589 189 IRVAAQEKIHVELLEDQLQKLQ-HELTHRGVS 219 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 219 (904)
-...-++.|+...+.++++.+. .|+-.+|..
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k 652 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGK 652 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666677777777776665 444444433
No 386
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=53.69 E-value=2.3e+02 Score=30.67 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=76.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (904)
++...++.+..+.-.+-+.-..+-..|..+ .+.......+++.|..+...-..++.++..+-..+.|-. .+|+ ..+
T Consensus 62 s~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK-~~Y~--~~c 138 (234)
T cd07652 62 SFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAK-ARYD--SLA 138 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHH--HHH
Confidence 334444444444443333333333333222 122334445556666555555555555555554444422 2222 344
Q ss_pred HHHHHHHHH--HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHH
Q 002589 326 EKVENLQGL--LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (904)
Q Consensus 326 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (904)
+..|.++.. =.+..--........++-.++++|++..+..... .+-+.....-+-|+-.+-+-++.|-+-+..+|.-
T Consensus 139 ~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~-~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~ 217 (234)
T cd07652 139 DDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYAS-KVNAAQALRQELLSRHRPEAVKDLFDLILEIDAA 217 (234)
T ss_pred HHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 444443321 0000000112233445556888888876443321 1222222222223445666677777777788888
Q ss_pred HHHHHHHHHH
Q 002589 404 IHSYVQLYQE 413 (904)
Q Consensus 404 ~~~~~~~~~~ 413 (904)
+.-+++.|+-
T Consensus 218 l~~~~~~~~~ 227 (234)
T cd07652 218 LRLQYQKYAL 227 (234)
T ss_pred HHHHHHHHhh
Confidence 8888888863
No 387
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=53.47 E-value=3.2e+02 Score=29.40 Aligned_cols=186 Identities=18% Similarity=0.302 Sum_probs=95.7
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-cccchhhhhhHHHHHHHHHHHHHHHhh
Q 002589 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK-LSTLKVECKDLYEKVENLQGLLAKATK 340 (904)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (904)
|+..+...-++.....-|++.+-.--+.|+.|.+-.+.|+.+-...-..+++ +...+-.||. |...++.+.+
T Consensus 20 lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~-------l~~~i~~~~~ 92 (215)
T PF07083_consen 20 LKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKE-------LIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHH
Confidence 4556666666666777788888888899999988888888765544333322 3333334444 4444555444
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 002589 341 QADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
..+.-+-...+ +.-..|.+.+.+-+++.. -|.+....+.+. ...+-.----.+..--++|.+.+..-....++..
T Consensus 93 ~I~~~ik~~Ee-~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~---~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~ 168 (215)
T PF07083_consen 93 KIDEQIKEFEE-KEKEEKREKIKEYFEEMAEEYGVDPEPFERI---IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIK 168 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHhhh---cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 344556677766665432 223333322211 1111100000111122344454444444444444
Q ss_pred HHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHH
Q 002589 420 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEA 467 (904)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a 467 (904)
.....+.+.-.. -+||++-|-++|- +|..+...+..-++
T Consensus 169 ~~~~~i~~~A~~-------~~l~~~~yi~~l~--~g~~l~eil~~i~~ 207 (215)
T PF07083_consen 169 AAKQAIEEKAEE-------YGLPADPYIRMLD--YGKTLAEILKQIKE 207 (215)
T ss_pred HHHHHHHHHHHH-------cCCCcHHHHHHHH--cCCCHHHHHHHHHH
Confidence 433333333222 5699999998884 45765555544443
No 388
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.25 E-value=4.8e+02 Score=31.41 Aligned_cols=48 Identities=29% Similarity=0.255 Sum_probs=29.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (904)
+--+|++++.++|-..-+-....|+.+.+ +..||.+|+.+++..+++|
T Consensus 228 se~ee~eel~eq~eeneel~ae~kqh~v~-------~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 228 SEEEEVEELTEQNEENEELQAEYKQHLVE-------YKALESKRSQFEEQNSELE 275 (521)
T ss_pred ccchhHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHH
Confidence 44566677777666554433444444443 4556777777777777777
No 389
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=53.13 E-value=27 Score=42.59 Aligned_cols=89 Identities=12% Similarity=0.017 Sum_probs=61.9
Q ss_pred HHHcCCCCCCCCCcEEEEEecccCccCHHHHHHHHHHhhc--CCcEEEEEecCCcccccH--------------------
Q 002589 799 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPHIQV-------------------- 856 (904)
Q Consensus 799 Rk~LGL~~~d~d~plVgfVGRL~~qKGIdlLIeAiarLle--~nvqLVLVGdGp~~~lek-------------------- 856 (904)
|..+|||+ +..+++|.++. .|-...+.+-...+++ +|-.|+|.|.|+.+.+..
T Consensus 421 R~~lglp~---~avVf~c~~n~--~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p 495 (620)
T COG3914 421 RAQLGLPE---DAVVFCCFNNY--FKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLP 495 (620)
T ss_pred hhhcCCCC---CeEEEEecCCc--ccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecC
Confidence 45789984 55666676664 4555566666666654 477888888876553211
Q ss_pred -------HHHHHhcCeEEEcCCCCCChHHHHHHccCCcccccCC
Q 002589 857 -------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 893 (904)
Q Consensus 857 -------e~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~~~v 893 (904)
..-|..||+|+=.--|-+ +.|.+||+-+|+||+.-+
T Consensus 496 ~~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm~vPVlT~~ 538 (620)
T COG3914 496 PAPNEDHRARYGIADLVLDTYPYGG-HTTASDALWMGVPVLTRV 538 (620)
T ss_pred CCCCHHHHHhhchhheeeecccCCC-ccchHHHHHhcCceeeec
Confidence 088999999987665633 678999999999997644
No 390
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=53.13 E-value=5.6e+02 Score=32.20 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=70.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHH-HHHHHH
Q 002589 134 DNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQL-QKLQHE 212 (904)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (904)
-.+..-++.++|++.---|-++.+||++...++|+-+.|+. ++++|+---. |..-|-+-..++.+-=- .+++.+
T Consensus 6 ~~~~~~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~---y~~~l~~l~~--k~~~q~~~~d~v~~~~~~q~~~~~ 80 (640)
T KOG3565|consen 6 RSVLRELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKE---YEEKLRSLCK--KFEFQSKSGDEVAESVSGQPLFSE 80 (640)
T ss_pred HHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHH---HHHHHHHhhh--HhhcCCcccchHHHHhccCcchhH
Confidence 34566778899999999999999999999999999888765 4555543322 22222222222210000 011111
Q ss_pred hhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh
Q 002589 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (904)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (904)
+.+ ..+.+...++.|+.||++.|..+++....+.+++...
T Consensus 81 ~lq----------------------------~~~~i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~ 120 (640)
T KOG3565|consen 81 LLQ----------------------------RAQQIATRLEILKIEDEEVKKSLEATLKTSLDLVAQR 120 (640)
T ss_pred HHH----------------------------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1346677788888899999988888877766655443
No 391
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.05 E-value=6e+02 Score=32.49 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=42.5
Q ss_pred HhhcCcchhhhHHhhhh--hhhhhHH------hh-hhccCCCC-CCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHC
Q 002589 475 WKRNGRIRDAYMECKEK--NEHEAIS------TF-LKLTSSSI-SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK 544 (904)
Q Consensus 475 ~~~~~~~~~~~~~~~~~--~~~~~~~------~~-~~~~~~~~-~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~ 544 (904)
|..+.+....|.+...+ .+.|.|. .| .-++.+.. .|....+++- |.+- -|-..+......++.+.
T Consensus 975 ~r~dgs~iety~dS~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlD-EAF~----R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913 975 EREDGSVIETYTDSQGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILD-EAFS----RSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred eccCCceeeeeecCCCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeec-hhhc----cCCHHHHHHHHHHHHHc
Confidence 44555566666653222 2334332 22 34444444 4455666554 3222 24456777778889999
Q ss_pred CCeEEEEeeC
Q 002589 545 GHLVEIVLPK 554 (904)
Q Consensus 545 GHeV~VItP~ 554 (904)
|....++||-
T Consensus 1050 glh~v~iTPl 1059 (1104)
T COG4913 1050 GLHAVFITPL 1059 (1104)
T ss_pred CceEEEechH
Confidence 9999999986
No 392
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=52.90 E-value=2.5e+02 Score=27.97 Aligned_cols=10 Identities=40% Similarity=0.508 Sum_probs=3.6
Q ss_pred HHHHHHHHhh
Q 002589 388 QKMKLLEERL 397 (904)
Q Consensus 388 ~~~~~~~~~~ 397 (904)
.+...+.+.+
T Consensus 166 ~~~~~l~~~l 175 (202)
T PF01442_consen 166 EKAEELKETL 175 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 393
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.44 E-value=4e+02 Score=30.34 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=46.8
Q ss_pred HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH-------HHHHHHHHhhhhhh-HHHHhhhhHHHH
Q 002589 285 MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN-------LQGLLAKATKQADQ-AISVLQQNQELR 356 (904)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 356 (904)
.+.++.+.-...++|||......++.|++.-. +.|| +-|++.. |+..|+.|-+.++. --+|..-...++
T Consensus 183 ~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~-Kqes--~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~ 259 (305)
T PF14915_consen 183 SVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG-KQES--LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44556666777788999988888888887544 4443 3333333 55677777777763 223443334455
Q ss_pred HHHHHHHH
Q 002589 357 KKVDKLEE 364 (904)
Q Consensus 357 ~~~~~~~~ 364 (904)
+-|.+|.+
T Consensus 260 d~~~~L~a 267 (305)
T PF14915_consen 260 DIVKKLQA 267 (305)
T ss_pred HHHHHHHH
Confidence 55555554
No 394
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.19 E-value=1.5e+02 Score=32.99 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=44.0
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc---------hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002589 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL---------KVECKDLYEKVENLQGLLAKATKQADQAISV 348 (904)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (904)
.....+..+..+++.|+..++.+|.++..++.++..--.- --.|+...++++..+.-|+.+.++.+.++.-
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666677777777777777777777666554322111 1456666777777776666665555554444
Q ss_pred hh
Q 002589 349 LQ 350 (904)
Q Consensus 349 ~~ 350 (904)
++
T Consensus 212 l~ 213 (301)
T PF14362_consen 212 LD 213 (301)
T ss_pred HH
Confidence 43
No 395
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.71 E-value=4.3e+02 Score=33.88 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=49.4
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHHHH
Q 002589 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENLQG 333 (904)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (904)
.+.-|.+-|+.+..-++.+-.....+..+.-+++.++..+.-.++.-... +.+......++.+-..+-..-++|..
T Consensus 531 gkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~ 610 (769)
T PF05911_consen 531 GKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEM 610 (769)
T ss_pred chhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444454444444444444445555554444433321111 22222222222222233223344445
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002589 334 LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (904)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
-|.+++.+.+..-. |-++...++..|+..|+.++
T Consensus 611 ~L~~~~d~lE~~~~---qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 611 ELASCQDQLESLKN---QLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55566555554433 33566666666666666444
No 396
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=51.01 E-value=76 Score=39.22 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=60.3
Q ss_pred HHHHHHhhhhhhhhch---HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCC
Q 002589 361 KLEESLDEANIYKLSS---EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEP 437 (904)
Q Consensus 361 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (904)
++.+-|+..+..+++- ..-++.-+.++++++.++..++..++++.++.+.|...+.+..+.|...+.-.+-.
T Consensus 192 ~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 266 (646)
T PRK05771 192 EVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL----- 266 (646)
T ss_pred HHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444455555544432 22355567788888889999999999999988887777665555555433322221
Q ss_pred CCCCChHHHHHHHHHhhhhhhhcccChHHHHHHHHHHHhhc
Q 002589 438 VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRN 478 (904)
Q Consensus 438 ~~~~~~~~~~~lll~~d~~~~~~~~~~~~a~~l~~~~~~~~ 478 (904)
.++...=+..+++|-+..++...+++.+.+..
T Consensus 267 ---------~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~ 298 (646)
T PRK05771 267 ---------SKFLKTDKTFAIEGWVPEDRVKKLKELIDKAT 298 (646)
T ss_pred ---------HhhhcCCcEEEEEEEeehhHHHHHHHHHHHhc
Confidence 11111112233344456667777888766544
No 397
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.85 E-value=2.6e+02 Score=29.57 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=51.0
Q ss_pred ccchhHHHHHHHHhhhhhh----hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHH
Q 002589 260 LSLKNDIKVLKAELNSVKD----ADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENL 331 (904)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 331 (904)
..|+.-|..+...+..+.. .--.-..++++...++..+.++|.+...| ++|.++---.+. ..+-+.++.|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k--~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK--ADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3444444444444443332 22334467888888888888888886555 556654332222 2456777888
Q ss_pred HHHHHHHhhhhhhHH
Q 002589 332 QGLLAKATKQADQAI 346 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (904)
+..++.++.++++.-
T Consensus 104 ~~~~~~~~~~~~~l~ 118 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLK 118 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777776653
No 398
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.71 E-value=50 Score=33.70 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=33.4
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (904)
..+.+..|+++.+.|++.|+.|.+.++..+- ...+..|+.||..+-++++.|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667777777788887777765542 23445556666666666666554
No 399
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.68 E-value=1.3e+02 Score=37.24 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 002589 159 EDLHKILQEKEALQGEINALEMRLAETDARI 189 (904)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (904)
++++++..|-.+|+.+++.|+.++++...++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433
No 400
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.47 E-value=1.6e+02 Score=33.65 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=77.0
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhh-h---HH
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQ-N---QE 354 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 354 (904)
+.+.+.-++++-..++..|++.|.+|...+..-.-+++ ..+-...-+-+..|+..+..+..+..+.-..... | +.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 45556666667777777777777777776664433332 2223345566777777777776666655545444 3 34
Q ss_pred HHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHH
Q 002589 355 LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQD 420 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 420 (904)
++.+++.|++.+.+-.- ++.....++++.... ....|+-+.+-......+.++.|++. +++.+.
T Consensus 247 l~~~i~~l~~~i~~e~~-~i~~~~~~~l~~~~~-~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~ 311 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRN-QLSGGLGDSLNEQTA-DYQRLVLQNELAQQQLKAALTSLQQTRVEADRQ 311 (362)
T ss_pred HHHHHHHHHHHHHHHHH-HhhcCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777776654221 110100112232222 34555556666666666777777765 444444
No 401
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.21 E-value=2.6e+02 Score=32.79 Aligned_cols=134 Identities=31% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh-hhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccc
Q 002589 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (904)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (904)
+++|+.|+.----|+..+..|+.++-.-=.=|--+-| |+.+.+.|||||..+. ||-|
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt-eLqQ--------------------- 323 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT-ELQQ--------------------- 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---------------------
Q ss_pred ccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 002589 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (904)
|.|.-||++|... +||+.-.--||+ ||++.-+..-|.-++||.-
T Consensus 324 ---------------------------nEi~nLKqElasm---eervaYQsyERa------RdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 324 ---------------------------NEIANLKQELASM---EERVAYQSYERA------RDIQEALESCQTRISKLEL 367 (455)
T ss_pred ---------------------------HHHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhH-HHHHHH--HHHHHHHHhhhhhhHHHHh
Q 002589 317 LKVECKDL-YEKVEN--LQGLLAKATKQADQAISVL 349 (904)
Q Consensus 317 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 349 (904)
.+.+-.-. -|-++| -+.||.++-|-.=.-..||
T Consensus 368 ~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~Vl 403 (455)
T KOG3850|consen 368 QQQQQQVVQLEGLENAVARRLLGKFINIILALMTVL 403 (455)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
No 402
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.07 E-value=2.5e+02 Score=29.09 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=40.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (904)
..-+.|+++-.+|...+.+++.|+..-... ....++|+..-..+ |.++... +| .++-|+++|+.
T Consensus 33 ~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L------~~q~~~ek~~r~~~----e~~l~~~-Ed-----~~~~e~k~L~~ 96 (158)
T PF09744_consen 33 RVLELLESLASRNQEHEVELELLREDNEQL------ETQYEREKELRKQA----EEELLEL-ED-----QWRQERKDLQS 96 (158)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHH----HHHHHHH-HH-----HHHHHHHHHHH
Confidence 445667777777777666666666532221 12223333332222 2222211 23 34678889999
Q ss_pred HHHHHHHHHHH
Q 002589 327 KVENLQGLLAK 337 (904)
Q Consensus 327 ~~~~~~~~~~~ 337 (904)
+|+.|+..-..
T Consensus 97 ~v~~Le~e~r~ 107 (158)
T PF09744_consen 97 QVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHH
Confidence 99998875433
No 403
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=49.69 E-value=2.7e+02 Score=27.59 Aligned_cols=17 Identities=18% Similarity=0.308 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhhhhhhh
Q 002589 265 DIKVLKAELNSVKDADE 281 (904)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (904)
|+..++..+...+...+
T Consensus 31 d~~~~~~~l~~~~~~~~ 47 (213)
T cd00176 31 DLESVEALLKKHEALEA 47 (213)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55555555544444333
No 404
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=49.27 E-value=4.2e+02 Score=29.66 Aligned_cols=149 Identities=30% Similarity=0.359 Sum_probs=82.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh----------hh---hHHHHHHhhhhh---HHhhHHHHHhhhhcch
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------AD---ERVVMLEMERSS---LESSLKELESKLSISQ 308 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 308 (904)
|-++...+.+|++|.-.|..|+..-.+-..+|.. -+ -||--|+|=-++ |-+-|.-.|.-|....
T Consensus 95 i~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~ 174 (264)
T PF08687_consen 95 IESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLD 174 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4467777888888877777777654443333321 11 122223332222 3444444444444444
Q ss_pred hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 002589 309 EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (904)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (904)
+|.. ..|=..|-+|-.-|.. |-+.| ++|..-+|+-+..+.+.-...++.+.++.|.-+++-
T Consensus 175 ~~~~-----~~Er~~L~~k~~~L~~-------Q~edA-------k~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~m 235 (264)
T PF08687_consen 175 EDAD-----PEERESLLEKRRLLQR-------QLEDA-------KELKENLDRRERVVSEILARYLSEEQLADYRHFVKM 235 (264)
T ss_dssp ----------HHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ccch-----hHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3321 1222233444333333 33333 567777888888888888888999999999999988
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 002589 389 KMKLLEERLQRSDEEIHSYVQLYQESVKE 417 (904)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (904)
|.+++-+. .+|---|+++++-++.
T Consensus 236 Ka~Ll~eq-----reLddkiklgeEQL~~ 259 (264)
T PF08687_consen 236 KAALLIEQ-----RELDDKIKLGEEQLEA 259 (264)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HhHHHHHHhhHHHHHH
Confidence 88887664 4455555555554443
No 405
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=48.51 E-value=24 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred hccCCCCCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002589 502 KLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (904)
Q Consensus 502 ~~~~~~~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP 553 (904)
++...-++++|||+++ ||.|.+-..|++.|.++||+|.++..
T Consensus 111 ~~~~~~~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 111 RVPVGIGRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCcccccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3344455778998854 78888899999999999999998853
No 406
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.28 E-value=1.9e+02 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHH
Q 002589 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (904)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (904)
+.|..++|.||.++..-.-..-....+..-...|+..-..|++.|+.+....
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 4567777777777766544444445555555666666777777777766664
No 407
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=48.27 E-value=4.8e+02 Score=30.36 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred ccCCCccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhHHH--hhhhchhhhhhhhhhh
Q 002589 121 NCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQE---KEALQGEINALE--MRLAETDARIRVAAQE 195 (904)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 195 (904)
|...+.+..++--.+|+...-=.|--+ +||-..++.|.+..+. .|+--|+.||-. |-|..--+-++--..+
T Consensus 2 NLeeeqgvnd~Sk~ELl~LfS~lEGEl----eARd~VIdaLKraqhkd~fiE~kYGK~NinDP~~ALqRDf~~l~Ek~D~ 77 (561)
T KOG1103|consen 2 NLEEEQGVNDFSKDELLKLFSFLEGEL----EARDDVIDALKRAQHKDLFIEAKYGKLNINDPFAALQRDFAILGEKIDE 77 (561)
T ss_pred cchhhccccccchHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHhccccc
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002589 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 275 (904)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (904)
.--+..-|.+|.-|..-+++ -.+..-+.++.-...=+.-..+.|+=-..-......
T Consensus 78 EK~p~ct~spl~iL~~mM~q------------------------cKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqd 133 (561)
T KOG1103|consen 78 EKIPQCTESPLDILDKMMAQ------------------------CKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQD 133 (561)
T ss_pred cccceeccChhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hhhhhhHHHHHHhhhhh--------------HHhhHHHHHhhhhcchhhhhcccc-chhhhhhHHHHHHHHHHHHHHHhh
Q 002589 276 VKDADERVVMLEMERSS--------------LESSLKELESKLSISQEDVAKLST-LKVECKDLYEKVENLQGLLAKATK 340 (904)
Q Consensus 276 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (904)
.++.|.-..+|||||.. .|..-+.||++|..-..---.++. |-.||| ..|-+|..
T Consensus 134 aaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcK----------ka~~KaaE 203 (561)
T KOG1103|consen 134 AAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECK----------KALLKAAE 203 (561)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHh---------hhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002589 341 QADQAISVLQQNQELRKKVDKLEESLD---------EANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 410 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (904)
.-.+|-.+.-+++.=...+.++++++. ||.+.|+-+| +....+.|+-++...|.|-.--.+|+.|.-+.
T Consensus 204 egqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~E-fdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 204 EGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEE-FDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred hhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=47.98 E-value=26 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 002589 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (904)
Q Consensus 511 ~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~y 555 (904)
+-||+.+.+-+ .+.--.++..++++|+++||+|+|++|..
T Consensus 20 ~~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 20 AARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred cccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 34788775421 34557889999999999999999999864
No 409
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.40 E-value=3.4e+02 Score=30.60 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh--------hhcc---c
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED--------VAKL---S 315 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~ 315 (904)
+|..-+..-|+||..|.-|.++|..++.+....-+-.+..+- ..++...-+-++-+++.+. ++++ .
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeA---q~ese~~a~aseNaarneeelqwrrdeanfic~~E 163 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEA---QFESEKMAGASENAARNEEELQWRRDEANFICAHE 163 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHH---HHHHHHhcccccccccchHHHHhhHHHHHHHHHHH
Confidence 567778889999999999999999888776654443333221 1111111111222222222 1111 1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhh-----chHHHHHHHHHHHHH
Q 002589 316 TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKL-----SSEKMQQYNELMQQK 389 (904)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~ 389 (904)
.|+--|+.|- -.|.++++- --.++-.....+.|+-.|--.|--|- .-|- ..+-+--.|..|+.|
T Consensus 164 gLkak~a~La---fDLkamide-------KEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhak 233 (389)
T KOG4687|consen 164 GLKAKCAGLA---FDLKAMIDE-------KEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAK 233 (389)
T ss_pred HHHHHhhhhh---hHHHHHhch-------HHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHH
Confidence 1222222220 012233322 12245567788889988876664332 2221 223344467888888
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHH
Q 002589 390 MKLLEERLQRSDEEIHSYVQLYQESVK 416 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (904)
+|--++-+ +.|.--|-+|..-.+
T Consensus 234 lkiadeEl----EliK~siaKYKqM~d 256 (389)
T KOG4687|consen 234 LKIADEEL----ELIKMSIAKYKQMAD 256 (389)
T ss_pred hcccHHHH----HHHHHHHHHHHHHHH
Confidence 88776654 345555566655433
No 410
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=47.29 E-value=2.1e+02 Score=31.96 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=9.9
Q ss_pred HHHCCCeEEEEeeCCC
Q 002589 541 LQKKGHLVEIVLPKYD 556 (904)
Q Consensus 541 L~k~GHeV~VItP~y~ 556 (904)
..+.|-.|.|..+.|+
T Consensus 253 ~i~~Gq~v~v~~~~~~ 268 (331)
T PRK03598 253 QAQPGRKVLLYTDGRP 268 (331)
T ss_pred hCCCCCEEEEEEcCCC
Confidence 4456777777765544
No 411
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=47.10 E-value=3.9e+02 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=25.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhh-hh-hhhhhHHHHHHhhhhhHHhhHH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELN-SV-KDADERVVMLEMERSSLESSLK 298 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 298 (904)
++...++.++.|.-.+=+.=..+-..|. .| .....+...++++|..++....
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~ 110 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHME 110 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555444544443 22 2334444445555544433333
No 412
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=47.03 E-value=2.3e+02 Score=33.34 Aligned_cols=86 Identities=16% Similarity=0.330 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (904)
.+++..+..|+.+..+..+++ -..=+..+.+++.+...|+. +++.+ --+..+|++..++.|+..+ +.
T Consensus 305 ~~l~~~~q~L~~l~~rL~~a~--~~~L~~~~~~L~~l~~rL~~-----lsP~~---~L~r~~qrL~~L~~rL~~a---~~ 371 (438)
T PRK00286 305 RLLAQQQQRLDRLQQRLQRAL--ERRLRLAKQRLERLSQRLQQ-----QNPQR---RIERAQQRLEQLEQRLRRA---MR 371 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh-----cCHHH---HHHHHHHHHHHHHHHHHHH---HH
Confidence 345555555555555555552 22333455666667666653 23322 2345677777777776533 55
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002589 406 SYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~ 424 (904)
..++.++..++.-...|+.
T Consensus 372 ~~L~~~~~rL~~l~~rL~~ 390 (438)
T PRK00286 372 RQLKRKRQRLEALAQQLEA 390 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 413
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.93 E-value=3.8e+02 Score=28.50 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhhHhhhhhc
Q 002589 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEESKKR 432 (904)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 432 (904)
+.+.++.+..+.+|...-..|..=+..+... |.+|++.|..+-+..-+.
T Consensus 135 ~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ 184 (198)
T cd07630 135 EQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKN 184 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999999888887 999999998876654443
No 414
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=46.89 E-value=4.9e+02 Score=29.74 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=53.5
Q ss_pred cccchhHHHHHHHhhhh-h----HHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHh
Q 002589 129 STSQLDNLISMIRNAEK-N----ILLLNEA---RVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVE 200 (904)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (904)
.+..+-|.||-++..-- | .-++-+. ...+.+..+++|.|-.+|-.|+..+.. | -++|.++|..-.
T Consensus 56 ~s~dfsD~i~k~~r~~y~~~s~~yEm~G~G~~~kETp~qK~qRll~Ev~eL~~eve~ik~-----d--k~~a~Eek~t~~ 128 (371)
T KOG3958|consen 56 TSSDFSDRIGKKRRHGYGNNSYVYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKT-----D--KESATEEKLTPV 128 (371)
T ss_pred CcccchHHHHhhhhhccCCCcceeeeeccCcCcccCHHHHHHHHHHHHHHHHHHHHHHhh-----c--hhhhhhhhcchH
Confidence 34556677776553211 1 1112221 345677888888888888777665543 3 457889999999
Q ss_pred hhHHHHHHHHHHhhh
Q 002589 201 LLEDQLQKLQHELTH 215 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~ 215 (904)
++-.+|+.|+++|-.
T Consensus 129 l~A~vla~lkk~l~a 143 (371)
T KOG3958|consen 129 LLAKVLAALKKQLVA 143 (371)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
No 415
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=46.46 E-value=74 Score=35.34 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=44.4
Q ss_pred HHHHHHHcCCCCCCCCCcEE-EEEec-ccCccCHH--HHHHHHHHhhcCCcEEEEEecCCcccccH--------------
Q 002589 795 KESIRKHLGLSSADARKPLV-GCITR-LVPQKGVH--LIRHAIYRTLELGGQFILLGSSPVPHIQV-------------- 856 (904)
Q Consensus 795 K~aLRk~LGL~~~d~d~plV-gfVGR-L~~qKGId--lLIeAiarLle~nvqLVLVGdGp~~~lek-------------- 856 (904)
+..+...+++.. ++|+| +..|- ..+.|.+. ...+.+..+.+.+.++++.|++.+.....
T Consensus 161 ~~~~~~~~~~~~---~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDT---ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCC---CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCC
Confidence 344556677652 34554 45554 44566544 66666666665678999999754432100
Q ss_pred --------HHHHHhcCeEEEcC
Q 002589 857 --------YPILLSSFSFLRKH 870 (904)
Q Consensus 857 --------e~LyAaADVfVlPS 870 (904)
..+++.||++|..-
T Consensus 238 g~~sL~el~ali~~a~l~I~~D 259 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTND 259 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeC
Confidence 17888888888763
No 416
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.35 E-value=2.1e+02 Score=32.14 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=88.9
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002589 143 AEKNILLLNEA-RVQALEDLHKILQEKEALQGE--INALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (904)
Q Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (904)
.-.|..|=|+. |-.-|+-|=.|. +.||.. -++=+.+|.+.++-++--...++.|.-|...|+.+...--..
T Consensus 112 IAsNc~lkS~~~RS~yLe~Lc~II---qeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~--- 185 (269)
T PF05278_consen 112 IASNCKLKSQQFRSYYLECLCDII---QELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIY--- 185 (269)
T ss_pred HhhccccCcHHHHHHHHHHHHHHH---HHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH---
Confidence 34566666643 444455444444 445542 255577888888888888889999999988888765432211
Q ss_pred cccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 002589 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 299 (904)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (904)
........|-...+.+++..+.+|... .+.+...|+|-+.+...+.+
T Consensus 186 ------------------------------~~~~~~e~eke~~~r~l~~~~~ELe~~---~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 186 ------------------------------DQHETREEEKEEKDRKLELKKEELEEL---EEELKQKEKEVKEIKERITE 232 (269)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 111222223223344566666555443 45566677777777777777
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 002589 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (904)
+=.+|..+....++++.-= ..++-||++++
T Consensus 233 ~~~rl~~l~~~~~~l~k~~---~~~~sKV~kf~ 262 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSKTI---KSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 7777777666666554322 23677777764
No 417
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.73 E-value=3.5e+02 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHh
Q 002589 270 KAELNSVKDADERVVMLEMERSSLESSLKELES 302 (904)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (904)
...|+.....-+++-.+|+|-+.|++.|.++..
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777777777777766666553
No 418
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=45.70 E-value=73 Score=29.34 Aligned_cols=47 Identities=30% Similarity=0.365 Sum_probs=26.2
Q ss_pred ccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002589 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSI 306 (904)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (904)
+.++.|...+...|.. .+..++.+-.|+++...++..+++++.+|-+
T Consensus 54 ~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 54 MFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444432 2334455666666667777777777766654
No 419
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.65 E-value=4.8e+02 Score=29.20 Aligned_cols=173 Identities=27% Similarity=0.307 Sum_probs=90.6
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002589 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (904)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (904)
+|-.--|.=-+.+|...+.++.+|.++.+. ...+|+| |++.|.++|.+...++.++-.|. +|-..+-||.|
T Consensus 13 eE~~ywk~l~~~ykq~f~~~reEl~EFQeg---SrE~Eae---lesqL~q~etrnrdl~t~nqrl~---~E~e~~Kek~e 83 (333)
T KOG1853|consen 13 EEDQYWKLLHHEYKQHFLQMREELNEFQEG---SREIEAE---LESQLDQLETRNRDLETRNQRLT---TEQERNKEKQE 83 (333)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333344444577888888889999888754 4455554 78888888888888888877654 33334445544
Q ss_pred HHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHH---H---hhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002589 330 NLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEES---L---DEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (904)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (904)
.-.....+ |.++----|.| -..||+-|.+||.. | +.|.||- .+++.|--..--++..-||.-|++
T Consensus 84 ~q~~q~y~---q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s--leDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 84 DQRVQFYQ---QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS--LEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 43332222 21111111111 12344555555431 2 3455553 344444334444566667766654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcc--cCCCCCCCChH
Q 002589 400 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRA--VHEPVDDMPWE 444 (904)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 444 (904)
-... ..||.+..+--.+|..|-..+. -+-|--.||++
T Consensus 159 ke~l--------lesvqRLkdEardlrqelavr~kq~E~pR~~~Pss 197 (333)
T KOG1853|consen 159 KEVL--------LESVQRLKDEARDLRQELAVRTKQTERPRIVEPSS 197 (333)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccc
Confidence 3322 3455555555444444433332 23344556643
No 420
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.60 E-value=1.7e+02 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=19.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHH
Q 002589 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
.|...++|++++.+|++.|+ ...+..++.+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~--~~~~~Dp~~i 137 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE--KYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCHHHH
Confidence 45566677777777777777 3344556655
No 421
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.92 E-value=79 Score=34.81 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=20.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002589 315 STLKVECKDLYEKVENLQGLLAKATKQADQA 345 (904)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (904)
.+|+-|-..||||+-=||..=.+++...+.+
T Consensus 117 ~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~ 147 (248)
T PF08172_consen 117 ESLRADNVKLYEKIRYLQSYNNKGSGSSSSA 147 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCccc
Confidence 3445555569999999998876544443333
No 422
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.92 E-value=9.7e+02 Score=32.58 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=5.4
Q ss_pred hhHHHHHHHhh
Q 002589 133 LDNLISMIRNA 143 (904)
Q Consensus 133 ~~~~~~~~~~~ 143 (904)
..+|..||..+
T Consensus 693 ~~~l~~~i~s~ 703 (1294)
T KOG0962|consen 693 IKKLESKIDSA 703 (1294)
T ss_pred HHHHHHHHhcc
Confidence 34455555544
No 423
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.54 E-value=1.2e+02 Score=31.87 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=57.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (904)
++|+..|..+|.-|-+ .+..|.++++..++.|++|-|-|+.-+- --++..|+-||+..-+++
T Consensus 78 ~eel~~ld~~i~~l~e-----------------k~q~l~~t~s~veaEik~L~s~Lt~eem-Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTE-----------------KVQSLQQTCSYVEAEIKELSSALTTEEM-QEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666666655544433 3445567788889999999988765321 123455788999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 002589 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (904)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (904)
+++.+-..-.|...-.+ |-...|+-.+.-.|.
T Consensus 140 ~~~k~g~~~vtpedk~~--v~~~y~~~~~~wrk~ 171 (201)
T KOG4603|consen 140 KNIKAGTNHVTPEDKEQ--VYREYQKYCKEWRKR 171 (201)
T ss_pred HHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 99877555555444444 444444444443333
No 424
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=44.18 E-value=1.8e+02 Score=29.33 Aligned_cols=77 Identities=19% Similarity=0.098 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCccEEEEcCCchhhHHHHHHHhhccCCCCCCeEEEEecCCcc-cCCCChhhhhhcCCcccccCCcc
Q 002589 626 FSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEY-QGTAPAKELASCGLDVQQLNRPD 704 (904)
Q Consensus 626 FsraaLe~Lrq~g~kPDIIHaHdW~talvapL~~~~ya~~gL~giPiV~TIHnl~~-qG~~p~~~L~~~GL~~~~l~~~d 704 (904)
+.+.+.++++ ..+||+|-|-.+.++.++...++. ...+.++|++.-+-++.. .+. |+
T Consensus 77 ~~~~l~~~l~--~~~PD~IIsThp~~~~~~l~~lk~--~~~~~~~p~~tvvTD~~~~H~~--------------W~---- 134 (169)
T PF06925_consen 77 FARRLIRLLR--EFQPDLIISTHPFPAQVPLSRLKR--RGRLPNIPVVTVVTDFDTVHPF--------------WI---- 134 (169)
T ss_pred HHHHHHHHHh--hcCCCEEEECCcchhhhHHHHHHH--hhcccCCcEEEEEcCCCCCCcC--------------ee----
Confidence 3455555655 368999998866543331111121 112336777655555421 111 11
Q ss_pred cccccccccchhhhhHHhhhcCEEEEcCHHHHHHHHh
Q 002589 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRT 741 (904)
Q Consensus 705 rLqd~~~~~~in~lK~ai~~AD~VItVS~syaeeI~~ 741 (904)
-..+|..++.|+..++++..
T Consensus 135 -----------------~~~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 135 -----------------HPGVDRYFVASEEVKEELIE 154 (169)
T ss_pred -----------------cCCCCEEEECCHHHHHHHHH
Confidence 11379999999999988875
No 425
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.07 E-value=7.8e+02 Score=31.24 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
|..+..+|++.+..|+.+..--+-++|.-...+.-|.....++..|...+.+
T Consensus 386 qea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~R 437 (739)
T PF07111_consen 386 QEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNR 437 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456667777777777766555556654443333355555555555555544
No 426
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.01 E-value=75 Score=29.49 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002589 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR-SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (904)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (904)
|+||+.+-++.+. +|+ .-+|.|+|.||.+... -|.+|...|+-+-.+.+++...|...+.
T Consensus 2 KleKi~~eieK~k------~Ki----ae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 2 KLEKIRAEIEKTK------EKI----AELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred hHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6777777776654 455 5678889999887764 5789999999999999999999988765
No 427
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.57 E-value=2.3e+02 Score=32.28 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhhcc----cCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002589 201 LLEDQLQKLQHELTHRG----VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (904)
.||++-..||.|.++-. .-|.....+ +.+ ....+..-+..|-.|++||..-.+||+...+.|..|-+++.
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-v~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQL-VLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHH-HHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777887766642 112221111 111 11222234556667777777777777777777777766543
No 428
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.47 E-value=4.9e+02 Score=28.75 Aligned_cols=45 Identities=9% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhhHhh
Q 002589 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEE 428 (904)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 428 (904)
+.|..+++.++++++.-++++..=+..++.- -.||.++|..+-..
T Consensus 177 ~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~ 222 (240)
T cd07667 177 PKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADK 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777766666655 56777777665443
No 429
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.45 E-value=5.4e+02 Score=31.20 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002589 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (904)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (904)
|+.+.+|-+.+-+ .+.+.|.+.++=..+.++.|+..++.+-+++.+
T Consensus 120 ~~ile~k~~~f~~---~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 120 NRIFEHSNRRVDE---QNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 234456777888888899999988887766544
No 430
>PLN02778 3,5-epimerase/4-reductase
Probab=43.38 E-value=35 Score=37.63 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEE
Q 002589 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (904)
Q Consensus 506 ~~~~~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VI 551 (904)
.+....|||+++ ||.|..=..|++.|.++||+|++.
T Consensus 4 ~~~~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 4 TAGSATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344567898854 777788888999999999999754
No 431
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.32 E-value=8.4e+02 Score=31.42 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=15.3
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002589 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLH 162 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (904)
.-+||=- =.|-||--+-|. -|.+||++-+
T Consensus 312 ~TFEDKr--keNy~kGqaELe-rRRq~leeqq 340 (1118)
T KOG1029|consen 312 VTFEDKR--KENYEKGQAELE-RRRQALEEQQ 340 (1118)
T ss_pred cchhhhh--HHhHhhhhHHHH-HHHHHHHHHH
Confidence 3455532 246666555554 3556776544
No 432
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.07 E-value=3.5e+02 Score=34.19 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred CccccccchhHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh
Q 002589 125 GEELSTSQLDNLISMI------RNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIH 198 (904)
Q Consensus 125 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (904)
..++..+.||.+|+-+ .|.+=-+-++|..-..-.+++-.+.+...=|+.-+++|=|||++-..|- ...+-
T Consensus 159 ~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra----~~~fp 234 (683)
T PF08580_consen 159 RHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRA----ESIFP 234 (683)
T ss_pred ccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----HHhhH
Q ss_pred HhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh
Q 002589 199 VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (904)
+-.- .|-.--..|-+.=..|..|++.||.||.+.+=
T Consensus 235 ~a~e--------------------------------------------~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW 270 (683)
T PF08580_consen 235 SACE--------------------------------------------ELEDRYERLEKKWKKLEKEAESLKKELIEDRW 270 (683)
T ss_pred HHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcc---hhhhhccccchhhhhhHHHHHHHHHHHH--HHHhhhhhhHHHHhhhhH
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSIS---QEDVAKLSTLKVECKDLYEKVENLQGLL--AKATKQADQAISVLQQNQ 353 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 353 (904)
..=|...-..=..-++ +|.++-.|+..+ ...+..-..+..++...+.|+.+--.++ +..-.=.+.. +.-.-|.
T Consensus 271 ~~vFr~l~~q~~~m~e-sver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g-v~~r~n~ 348 (683)
T PF08580_consen 271 NIVFRNLGRQAQKMCE-SVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG-VADRLNA 348 (683)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh-HHHHhhH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhchHHHHHH
Q 002589 354 ELRKKVDKLEESLDEANIYKLSSEKMQQY 382 (904)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (904)
||+.|.+.|+ ..-.+..-+..+.+.||+
T Consensus 349 ~L~~rW~~L~-~~~d~~L~~~~~~~~q~l 376 (683)
T PF08580_consen 349 DLAQRWLELK-EDMDSLLEDSQSSSSQQL 376 (683)
T ss_pred HHHHHHHHHH-HHHHHhhhhccccccccc
No 433
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.01 E-value=1.2e+02 Score=28.87 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=26.6
Q ss_pred ccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 002589 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLS 305 (904)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (904)
+.++.|....+..|.. ....+.++..|++.-..|+..+++++++|.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665555555433 223356666666666666666666666654
No 434
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.70 E-value=7.2e+02 Score=31.44 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHH--CCCeEEEEeeC
Q 002589 529 GLGDVVAGLGKALQK--KGHLVEIVLPK 554 (904)
Q Consensus 529 GLg~vV~~LarAL~k--~GHeV~VItP~ 554 (904)
+-..+..++..-.+. .|+.|.|++-.
T Consensus 373 sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 373 SQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred cHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 556666666665554 79999999754
No 435
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.63 E-value=4.9e+02 Score=28.47 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002589 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (904)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (904)
-+...|++.|.+.|.+|.-----.+.+-..|..--+.++.=-++++.-..++..+|.....++.+=.+.|+.
T Consensus 188 ~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~ 259 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQE 259 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777765433333333333333333333333444455555555555555555554444443
No 436
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=42.59 E-value=5.6e+02 Score=29.15 Aligned_cols=56 Identities=32% Similarity=0.360 Sum_probs=36.4
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-LESSLKELESKL 304 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (904)
+.-++.|.+|=..|.+++..+.+++.+.+..--..+.--.++.. +..++.+++..+
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l 62 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSL 62 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888877766666655554432 333344444443
No 437
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.31 E-value=6.6e+02 Score=29.92 Aligned_cols=42 Identities=33% Similarity=0.432 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh
Q 002589 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIH 198 (904)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (904)
|-||-+|...=---...+||.|..+|++++.+|+--..++-|
T Consensus 146 a~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 146 AKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 333434433323334678999999999999999876656555
No 438
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=42.06 E-value=4.3e+02 Score=27.68 Aligned_cols=95 Identities=18% Similarity=0.331 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHH-Hhhh-hHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccc
Q 002589 323 DLYEKVENLQGLLAKATKQADQAIS-VLQQ-NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (904)
++|+--.+-=.+...++|+.+++-+ +|-| +.-+-+.|+.|+..+..- +.. .+++.++.+|.|-. ..
T Consensus 12 a~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~--~~~-------~s~~~~~~vk~L~k---~~ 79 (165)
T PF09602_consen 12 AFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQF--KRE-------FSDLYEEYVKQLRK---AT 79 (165)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHH---HH
Confidence 5788888888888888999988743 3333 333677788888888764 333 34556666666633 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 002589 401 DEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (904)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (904)
.+.+..+|..|+.-.+|-..-++.|--+.
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el~~~~ 108 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQELLLSP 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 56666666677776666666555544333
No 439
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.77 E-value=3.5e+02 Score=29.43 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=4.6
Q ss_pred CCccEEEE
Q 002589 639 KQPDIIHC 646 (904)
Q Consensus 639 ~kPDIIHa 646 (904)
..|++|+.
T Consensus 236 ~~~~l~~L 243 (251)
T PF11932_consen 236 RAPELLKL 243 (251)
T ss_pred CCcHHhcc
Confidence 35666664
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.58 E-value=6.5e+02 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=13.6
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSISQ 308 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (904)
..+|+..|..+...--..|.+|+.+....+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444444444433333
No 441
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=41.53 E-value=2.7e+02 Score=27.14 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhh
Q 002589 348 VLQQNQELRKKVDKLEESLDE 368 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (904)
+-+.-.+|+.+|+.+...|+.
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777777777665
No 442
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=41.49 E-value=3.6e+02 Score=33.12 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=14.4
Q ss_pred HHHHhhhhhhHHHhhhhchhhhh
Q 002589 167 EKEALQGEINALEMRLAETDARI 189 (904)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~ 189 (904)
++|+|.+.|..|..|+.++.+++
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV 30 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEV 30 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666664444
No 443
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.48 E-value=6.8e+02 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=17.1
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHH
Q 002589 343 DQAISVLQQNQELRKKVDKLEES 365 (904)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+.|..+-|.|..+.+++|||+..
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888889888764
No 444
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.44 E-value=19 Score=32.90 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.3
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh
Q 002589 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (904)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (904)
++.|.+||..||..|+.|+++|...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999988877543
No 445
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=40.85 E-value=8.3e+02 Score=30.65 Aligned_cols=104 Identities=27% Similarity=0.354 Sum_probs=57.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHhhhh----hh----HHHhhhhchh--hhhhhhhhhhhhHh
Q 002589 134 DNLISMIRNAEKNILLLNEARV---QALEDLHKILQEKEALQGE----IN----ALEMRLAETD--ARIRVAAQEKIHVE 200 (904)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~--~~~~~~~~~~~~~~ 200 (904)
++|...++++|.=..+-+.|+. +|++|.-.|+.| .+-.. -| +|.-+.+++| +..+.+++
T Consensus 150 ~sl~~~l~~te~~T~~A~sa~n~~I~alndh~~~~ke--s~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aR------ 221 (657)
T KOG1854|consen 150 ESLKKLLQSTENITKLATSAKNVAIGALNDHVNILKE--SLDDSKEAGWNSVTTALKLPESAADKDATAEKSAR------ 221 (657)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHH------
Confidence 4577778888877777777775 455555555543 22222 01 3333334443 44444443
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh
Q 002589 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE 258 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (904)
..+++|+.+-.--+-.+ .-++.|+++. ..+.+|.|+-+++.++.|
T Consensus 222 ---n~~e~L~~i~n~g~~~e-------Taq~nPlI~~---t~~ta~kLs~qldnv~~e 266 (657)
T KOG1854|consen 222 ---NAQEKLVTIANLGETGE-------TAQANPLITA---TKDTAHKLSNQLDNVKRE 266 (657)
T ss_pred ---HHHHHHHHHHHhcccch-------hhhcccchHH---HHHHHHHHHHHHHHHHHH
Confidence 23455554432221111 2455677654 356789999999999887
No 446
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.67 E-value=6.1e+02 Score=30.31 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccchhhHhhhhhh----hhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 002589 244 EIHSFSKELDSLK----TENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (904)
Q Consensus 244 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (904)
.+.+|-.||.+|| +-....+.+|..++.++..++. -..-..---.|+.++++-+.|..
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~----------------- 213 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSE----------------- 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHH-----------------
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002589 320 ECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (904)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (904)
+|..|-.+|+.||++.+...+-+-+= -.|=....|+.-..+-.--+-...+|+.|...++.-.|-.-|.==.
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~~R--------gvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~ 285 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVVQR--------GVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ 285 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002589 400 SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (904)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (904)
-=-+=+.++..-...+...++-|.++.+
T Consensus 286 ~V~eEQqfL~~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 286 KVCEEQQFLKLQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 447
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.42 E-value=46 Score=38.53 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 002589 356 RKKVDKLEESLDEANIYKL 374 (904)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (904)
..+++.||......||-=+
T Consensus 178 ~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhhccCCceeEE
Confidence 4567778888888876543
No 448
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.36 E-value=1.4e+02 Score=36.51 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=39.0
Q ss_pred ccccchhhhhhHHHHHHHHHHHH-HHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHH
Q 002589 313 KLSTLKVECKDLYEKVENLQGLL-AKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (904)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (904)
+..+.-..|+++-+++..|..=+ +-.++.+++. +..+=.+.-.++..|+..|++...---..+.|++++++++
T Consensus 40 df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~--i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~ 113 (593)
T PF06248_consen 40 DFSPSLQSAKDLIERSKSLAREINDLLQSEIENE--IQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLE 113 (593)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555656655555544 2222224443 4444555566666777777766665555666666655553
No 449
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.25 E-value=44 Score=31.44 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002589 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (904)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (904)
+.+..+-+..+..+.-+..|+... ......+.-+...-.+-.+++.|+.|--.+-..|..++....++
T Consensus 2 LDik~ir~n~e~v~~~l~~R~~~~------------~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~ 69 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRGGDE------------EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDA 69 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCT
T ss_pred CCHHHHHhCHHHHHHHHHHcCCCH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccH
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002589 277 KDADERVVMLEMERSSLESSLKELESKL 304 (904)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (904)
.+.-+.+..+-++-..++..++++|.++
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=40.22 E-value=72 Score=35.55 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccC
Q 002589 162 HKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLN 241 (904)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (904)
+.+++|=|.+=+.++....||+..+..--..++.+.. |+--++..|+.|+.+-......... .|..+-..----..
T Consensus 19 ~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~--ll~~~~k~L~aE~~qwqk~~peii~--~n~~VL~~lgkeel 94 (268)
T PF11802_consen 19 EELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLS--LLMMRVKCLTAELEQWQKRTPEIIP--LNPEVLLTLGKEEL 94 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH--HHHHHHHHHHHHHHHHHhcCCCcCC--CCHHHHHHHHHHHH
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-----HHhhH-HHHHhhhhcchh
Q 002589 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-----LESSL-KELESKLSISQE 309 (904)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~ 309 (904)
.-.+|.|.+-|..++..|..||.|++.=+.=|++....-+.+-...+|... =++++ ++|+.|+....+
T Consensus 95 qkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~ 168 (268)
T PF11802_consen 95 QKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKE 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
No 451
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.15 E-value=99 Score=27.85 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=41.3
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002589 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (904)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (904)
|.+++..|+..+..-+ ++|-+-..+||.+++.+.++.. ..-.++..|.++|+.|.+.++.
T Consensus 8 Ll~ale~Lq~~y~~q~-------------~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQ-------------QEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555554433 2588889999999988554432 4667888888888888887764
No 452
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=40.01 E-value=55 Score=34.85 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=29.4
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHH--HHHHHHHHHCCCeEEEEeeC
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVV--AGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV--~~LarAL~k~GHeV~VItP~ 554 (904)
.++||+.-. +||.+.+- .+|.+.|.+.||+|+|+...
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 456777543 48888875 79999999999999999755
No 453
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.66 E-value=1.8e+02 Score=31.83 Aligned_cols=84 Identities=11% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh-hhHH
Q 002589 268 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA-DQAI 346 (904)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (904)
.+..++..+.+.+.+|..+++|...|...=...+..|..-++|+..|... -.-+....++. +.+.
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i--------------Ikqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI--------------IKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 34556667777778888888888888887777877787778887653322 11122222222 2233
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 002589 347 SVLQQNQELRKKVDKLEES 365 (904)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ 365 (904)
....+..-|.+.||++..+
T Consensus 85 r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777555
No 454
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.48 E-value=1.4e+02 Score=32.55 Aligned_cols=92 Identities=34% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002589 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (904)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (904)
|-|-||.|.+.+|.+|.+ +.+|...|-..+.+||+++.+-|+ .-|.+--.-..|...+++
T Consensus 129 ~~~d~ke~~ee~kekl~E----------~~~EkeeL~~eleele~e~ee~~e----------rlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 129 EYMDLKEDYEELKEKLEE----------LQKEKEELLKELEELEAEYEEVQE----------RLKRLEVENSRLEEMLKK 188 (290)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhhhHHHHhhhhHHHHHHHHHHH---HHHhhhhhhhhchHHH
Q 002589 338 ATKQADQAISVLQQNQELRKKVDKLE---ESLDEANIYKLSSEKM 379 (904)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 379 (904)
.....-+|+++.|.|+ +++++-.|+++-++.+
T Consensus 189 ----------l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~ 223 (290)
T COG4026 189 ----------LPGEVYDLKKRWDELEPGVELPEEELISDLVKETL 223 (290)
T ss_pred ----------chhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
No 455
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.34 E-value=1.9e+02 Score=26.19 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=29.1
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002589 339 TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (904)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (904)
-.++.+| ++..+-|+.+|+.|++.-.... -.-+.|++.|..|++.-....+|++
T Consensus 10 E~ki~~a---veti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 10 EEKIQQA---VETIALLQMENEELKEKNNELK---EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555 3445567777777776432222 2334556666666655555555543
No 456
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=39.24 E-value=39 Score=35.66 Aligned_cols=27 Identities=37% Similarity=0.462 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
||.|.+-..|++.|.+.||+|.++...
T Consensus 7 GG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 7 GGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 666778889999999999999887543
No 457
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=39.19 E-value=2.6e+02 Score=32.16 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=34.3
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHhhhhchhh
Q 002589 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEIN--ALEMRLAETDA 187 (904)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 187 (904)
+.-|-+++.|-+.|+..+- +|-.++..++...+..+++-+ +|..|++-++|
T Consensus 85 ~~~iKsvFSne~qdl~~Mk----~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEA 137 (323)
T PF08537_consen 85 WSSIKSVFSNEEQDLTRMK----NACTNINSRLPNRERKSGREERRLLKDRILRSEA 137 (323)
T ss_pred HHHHHHHhCccHHHHHHHH----HHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHH
Confidence 4556677777777776554 356678888888777776654 66666665544
No 458
>PLN00016 RNA-binding protein; Provisional
Probab=39.10 E-value=30 Score=39.35 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 510 ~~MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
..|+|++++. ..||.|.+-..|++.|.+.||+|++++..
T Consensus 51 ~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 4468887754 25777888889999999999999999855
No 459
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=38.87 E-value=45 Score=36.98 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=13.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSV 276 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (904)
.++..-|+.|.--.|+|+..++......
T Consensus 215 r~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 215 RNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3344444455555555555555544443
No 460
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=38.82 E-value=7.6e+02 Score=29.57 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcc---cchhhhccCCCCcccccccCCcc
Q 002589 168 KEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEH---SELDVFANQNEPANEDLVLNNSE 244 (904)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 244 (904)
|..+..+|..|-+.+.+- +--+..|..+-..+.+-+.+.- .+++....... ....-..+-..|....+-.+...
T Consensus 80 k~h~d~~i~~l~~~i~~~--k~~~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 156 (426)
T smart00806 80 KKHIDDEIDTLQNELDEV--KQALESQREAIQRLKERQQNSA-ANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAE 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHhhhcc-cCcccccCCCCcccccccccccccCCCcccchhHHHH
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-HHHH--hhhhhHHhhHHHHHhhhhcchhhhhccccchhhh
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV-VMLE--MERSSLESSLKELESKLSISQEDVAKLSTLKVEC 321 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (904)
+++|-.+|.+||.=...-+.+++.-=+.+.+-...=..+ +..- --|+.++++=++|. .+|
T Consensus 157 l~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~-----------------~~S 219 (426)
T smart00806 157 LKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLS-----------------EDS 219 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHH-----------------HHH
Q ss_pred hhHHHHHHHHHHHHHHHhhhh---------hhHHHHhhhhHHHHHHHHHHHHHHhh----------hhhhhhchHHHHHH
Q 002589 322 KDLYEKVENLQGLLAKATKQA---------DQAISVLQQNQELRKKVDKLEESLDE----------ANIYKLSSEKMQQY 382 (904)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 382 (904)
..|-.||+.||++.+...+-+ .|--.|...-....+.+.++++.+.. +-.-+.+-| ||+
T Consensus 220 d~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE--qqf 297 (426)
T smart00806 220 DSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE--QQF 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHhh
Q 002589 383 NELMQQKMKLLEERL 397 (904)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (904)
-.+...-+--|++++
T Consensus 298 L~lQedL~~DL~dDL 312 (426)
T smart00806 298 LTLQEDLIADLKEDL 312 (426)
T ss_pred HHHHHHHHHHHHHHH
No 461
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=38.62 E-value=6.1e+02 Score=28.45 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (904)
+.+..|...+.+|..-.+++-.++.++..=+-+++.|++.++++.--+++++.
T Consensus 250 ~~~~~L~~~l~kak~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~~~ 302 (335)
T PF08429_consen 250 PSLDKLKDALQKAKEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKLEE 302 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCCch
Confidence 34555666666665555555555544444444556666666655555555543
No 462
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.55 E-value=7.9e+02 Score=29.70 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=46.5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhHHH-hhhhchhhhhhhhhhhhhhHhhhHHH
Q 002589 131 SQLDNLISMIRNAEKNILLLNEA----RVQALEDLHKILQEKEALQGEINALE-MRLAETDARIRVAAQEKIHVELLEDQ 205 (904)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (904)
.-|+-|.+.|.+..+|++-|-|- |+--++...+.+.+++.+.-+ --| .++.|+.+-+.-.+++ .+-.|+.
T Consensus 293 ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e--~~e~~~IqeleqdL~a~~ee---i~~~eel 367 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE--DEEIRRIQELEQDLEAVDEE---IESNEEL 367 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHH---HHhhHHH
Confidence 45788899999999999988763 444444444444444433211 111 3445555555444442 2234566
Q ss_pred HHHHHHHhhh
Q 002589 206 LQKLQHELTH 215 (904)
Q Consensus 206 ~~~~~~~~~~ 215 (904)
-++||+||..
T Consensus 368 ~~~Lrsele~ 377 (521)
T KOG1937|consen 368 AEKLRSELEK 377 (521)
T ss_pred HHHHHHHHhc
Confidence 6788888865
No 463
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.42 E-value=5e+02 Score=27.37 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=27.5
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 002589 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK 303 (904)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (904)
.+|.-..||..++ +=|..|...|..+-.. ...|-|.+..|-..+.|+=..
T Consensus 8 ~~~~~d~eF~e~~-------eyi~~L~~~l~~~~kv---~~Rl~kr~~el~~~~~efg~~ 57 (200)
T cd07624 8 LLKNRSPEFDKMN-------EYLTLFGEKLGTIERI---SQRIHKERIEYFDELKEYSPI 57 (200)
T ss_pred hhcCCCccHHHHH-------HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666554 4566666666554443 344445555566666655443
No 464
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=38.23 E-value=1.7e+02 Score=30.22 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=45.1
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHHHHHhhH
Q 002589 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYV-QLYQESVKEFQDTLHSLK 426 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 426 (904)
+..+|+++.+++++|.+.|..+ +|....-.+.-.|.+.+..+.-.+.|...+ +.|-..++.++..-+.|.
T Consensus 79 L~k~~Pev~~qa~~l~e~lQ~~---------vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~ 149 (155)
T PF07464_consen 79 LRKANPEVEKQANELQEKLQSA---------VQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLH 149 (155)
T ss_dssp GGG-SHHHHHT-SSSHHHHHHH---------HHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347999999999999888765 444556667777888888888888888887 566665655555444443
No 465
>COG4550 Predicted membrane protein [Function unknown]
Probab=37.75 E-value=3.2e+02 Score=27.06 Aligned_cols=92 Identities=21% Similarity=0.377 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002589 324 LYEKVENLQGLLAKA-----TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (904)
.-.++.+|...+..+ -+||+. -+-+||.+..+|++++..=++|.-++- +++ ++-+|.-|.+.+
T Consensus 7 i~~~a~~la~~ik~teeV~~fq~aE~---qin~n~~v~~~~~~iK~lQKeAVn~q~----y~K-----~eAlkqses~i~ 74 (120)
T COG4550 7 ILKQADNLANKIKETEEVKFFQQAEA---QINANQKVKTKVDEIKKLQKEAVNLQH----YDK-----EEALKQSESKID 74 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhHHHHH----hhH-----HHHHHHHHHHHH
Confidence 444555555554432 234544 467899999999999999999976542 211 122333444444
Q ss_pred cchHHHHH--HHHHHHHHHHHHHHHHHhhHh
Q 002589 399 RSDEEIHS--YVQLYQESVKEFQDTLHSLKE 427 (904)
Q Consensus 399 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 427 (904)
.--++|.+ .|+-|+.|..+--+-|.-+..
T Consensus 75 ~le~ei~~~PlVeefr~sq~daNdLlQ~it~ 105 (120)
T COG4550 75 ELEAEIDHLPLVEEFRTSQEDANDLLQYITK 105 (120)
T ss_pred HHHHHHhcCchHHHHHHHHHhHHHHHHHHHH
Confidence 44444443 455555555544444443333
No 466
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=37.74 E-value=1.3e+02 Score=36.49 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=9.4
Q ss_pred hhhhhHHHhhhhchhhhh
Q 002589 172 QGEINALEMRLAETDARI 189 (904)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ 189 (904)
|.-.+-++.+|..|++++
T Consensus 197 q~~y~~~~KelrdtN~q~ 214 (596)
T KOG4360|consen 197 QQLYGDCVKELRDTNTQA 214 (596)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555666555443
No 467
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.62 E-value=50 Score=36.21 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=28.0
Q ss_pred CeEEEEcCccCCCcCCC--cHHHHHHHHHHHHHHCCCeEEEEe
Q 002589 512 LHVIHIAAEMAPVAKVG--GLGDVVAGLGKALQKKGHLVEIVL 552 (904)
Q Consensus 512 MkILhIt~E~~P~akvG--GLg~vV~~LarAL~k~GHeV~VIt 552 (904)
|+|+.|.. | .| |-.+++..|+.+|++.|..|.+|=
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 77777765 2 34 445788999999999999999994
No 468
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=37.62 E-value=11 Score=46.31 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=0.0
Q ss_pred CcccchhhHhhhhhhhhhc-------cchhHHHHHHHHhhhhh
Q 002589 242 NSEIHSFSKELDSLKTENL-------SLKNDIKVLKAELNSVK 277 (904)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 277 (904)
...+..|..+++.|++|-. .+++.|..+-.+|..--
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~ 183 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDP 183 (619)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3455666666666666554 45555555555554433
No 469
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.62 E-value=8.8e+02 Score=29.99 Aligned_cols=139 Identities=22% Similarity=0.293 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002589 144 EKNILLLNEARVQ----ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (904)
Q Consensus 144 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (904)
|.-|.+|..-|++ -+|.++..-+|...|..+||.|..-|.|. |+++-.|+++.++-..+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ek-----------------e~sl~dlkehassLas~ 374 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEK-----------------ESSLIDLKEHASSLASA 374 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 5668888877765 35666666777778888888887755444 34444555554442111
Q ss_pred cccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh---hhhhhhHHHHHHhhhhhHHhh
Q 002589 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS---VKDADERVVMLEMERSSLESS 296 (904)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 296 (904)
.+-.++.+-++--.|.+=+||---|..|+..-+..+++ -.++++++..||+|++-.+
T Consensus 375 ------------------glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~-- 434 (654)
T KOG4809|consen 375 ------------------GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR-- 434 (654)
T ss_pred ------------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH--
Confidence 01224445566666777778877777776665555544 3578999999999987654
Q ss_pred HHHHHhhhhcchhhhhccccchhhhhhH
Q 002589 297 LKELESKLSISQEDVAKLSTLKVECKDL 324 (904)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (904)
..+.-+|+-|-.+-++--||+++
T Consensus 435 -----de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 435 -----DECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777777777777777765
No 470
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=37.46 E-value=60 Score=31.68 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.4
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
|||+.|+...- +.|-...++..+++.+.+.|++|++|-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987532 34777888888888999999999999654
No 471
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.39 E-value=1.8e+02 Score=34.58 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=36.7
Q ss_pred hhhhHHHHHHhhhhhH--------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002589 278 DADERVVMLEMERSSL--------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (904)
Q Consensus 278 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (904)
+.-|-..+|.|-|+.+ -+++.|...|+.+|..-.+++.++-.|--.=|..+|.|
T Consensus 365 ~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 365 EAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677888875 35677888888877777777777776655556666654
No 472
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.29 E-value=1.2e+02 Score=30.81 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=38.6
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHHHhhhhhhHHHHhh----hhHHHHHHHHHHHHHHh
Q 002589 293 LESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAKATKQADQAISVLQ----QNQELRKKVDKLEESLD 367 (904)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 367 (904)
-+++++.|++.+..-.-=+.++..+..|.-.- .+..+.|..+|.++.+=+++...+-. .+..+.+|+.+||++|.
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEESLR 111 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHHHH
Confidence 44555555555554444444444444443333 45566666666666555555433221 23456666666666654
No 473
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.25 E-value=4.8e+02 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=29.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 002589 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (904)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (904)
-.+++.+|..|..++.-+..+..+|....+..+-+-.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~ 41 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL 41 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 3567888899999999999888888887777665543
No 474
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.18 E-value=1.6e+02 Score=33.38 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDA 279 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (904)
.+..++..+.+|..++++.++....+|.....|
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666666666666666666555544
No 475
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.10 E-value=42 Score=29.38 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=34.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 293 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (904)
.+..++..|+.++..++...+.|+.++...+.+++++...-+++-++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 55667777777777777777788888888767788887777665443
No 476
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=37.03 E-value=52 Score=31.27 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=36.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhH
Q 002589 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSL 297 (904)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (904)
+|-.|||-+|||-..+|.|+++-+.....+ .|.++-.||--.-||...
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q---~ekiflmekkfe~lekky 115 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQ---AEKIFLMEKKFETLEKKY 115 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHH
Confidence 678899999999999999999988766554 456666666555555443
No 477
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.02 E-value=2.6e+02 Score=31.81 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc--
Q 002589 139 MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-- 216 (904)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (904)
||.||+ |.--+-.-+-.++.+-.+.|+++..+.-+...+ ..+++--...|--...+..++..||.+|.++
T Consensus 97 Mv~naQ-----LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 97 MVSNAQ-----LDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHhh-----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhccCCCCcccccccCCcccchhhHh--------hhhhhhhhccchhHHHHHHHHhhhhhh
Q 002589 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE--------LDSLKTENLSLKNDIKVLKAELNSVKD 278 (904)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (904)
+. ..++..-+...+++...-.+-.....|.|... |.-|-.||-.|-+.|..||.+|.+...
T Consensus 169 li~khGlVlv~~-~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 169 LIEKHGLVLVPD-ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHCCeeeCCC-CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhHHHHHHhhhhhH--------------------HhhHHHHHhhhhcchhhhhcc
Q 002589 279 ADERVVMLEMERSSL--------------------ESSLKELESKLSISQEDVAKL 314 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 314 (904)
..+.-. --.+-..| ...|.|+-.||..|.-|+.-|
T Consensus 248 ~~~~~~-~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQeit~~ 302 (302)
T PF09738_consen 248 EGRRQK-SSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEITTL 302 (302)
T ss_pred cccccc-ccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhhccC
No 478
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.94 E-value=52 Score=33.68 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=41.0
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchh
Q 002589 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQE 309 (904)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (904)
....+|...|+.++..+|.|++.+--.||+.. +|++....+++.|+++.......+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999999998764 5666666677666666666555444
No 479
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=36.71 E-value=1.6e+02 Score=27.94 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh-------hhhhHhhhHHHHHHHHHHhhhcccCcccchhh
Q 002589 154 RVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-------EKIHVELLEDQLQKLQHELTHRGVSEHSELDV 226 (904)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (904)
.....++.+.|+.|. .++.++|.|+.=..|+..|-.-... ...--+++..+|--.+
T Consensus 16 ~~~~~~Ef~~I~~Er-~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~---------------- 78 (109)
T PF03980_consen 16 EENCKKEFEEILEER-DVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYK---------------- 78 (109)
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHH----------------
Confidence 344567888888875 4677777777666655444331111 0111112222221111
Q ss_pred hccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHH
Q 002589 227 FANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKA 271 (904)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (904)
...+..|...++.+..||..|.+.|+.+++
T Consensus 79 ---------------~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 ---------------KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122346778888889999988888887765
No 480
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=36.61 E-value=1.1e+02 Score=38.13 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=76.9
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchh------hhhccccchhhhh----hHHHHHHHHHHHHHHHhhh-----hh
Q 002589 279 ADERVVMLEMERSSLESSLKELESKLSISQE------DVAKLSTLKVECK----DLYEKVENLQGLLAKATKQ-----AD 343 (904)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~ 343 (904)
.++....++.+.+.+++.+++++..+.+.+. |++-+...+..-- .--++.+.+...++...+- -.
T Consensus 111 ~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (660)
T COG1269 111 VEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEA 190 (660)
T ss_pred hhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhccchhhHhhcccceEEEEeeeehhhhhhHHHhhcccccchhhhcccc
Confidence 5666666666667777777777766655432 2222222221100 0122333333333332221 01
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHH--HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002589 344 QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM--QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (904)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (904)
....|.-.-.+.-++|++.-+++ ....++.+..+. .++-.-+.++++..+...+.-..++..+.++|...+..-...
T Consensus 191 ~~~~v~~~~~~~~~~v~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 269 (660)
T COG1269 191 SVVIVVAHGAEDLDKVSKILNEL-GFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREI 269 (660)
T ss_pred ceEEEEEecccchHHHHHHHHhC-CcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223334455677766665 344444444432 445566677777777777777888888888888877776666
Q ss_pred HHh
Q 002589 422 LHS 424 (904)
Q Consensus 422 ~~~ 424 (904)
|+.
T Consensus 270 l~~ 272 (660)
T COG1269 270 LEI 272 (660)
T ss_pred HHH
Confidence 654
No 481
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=36.43 E-value=47 Score=34.26 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.8
Q ss_pred CeEEEEcCccCCCcCCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 002589 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg~vV~~LarAL~k~GHeV~VIt 552 (904)
||++.|++. . ..-|-.+++..||.+|+..|+.|.+|=
T Consensus 17 ~kvI~v~s~---k-gG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 17 IKVLLITSV---K-PGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CcEEEEecC---C-CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 788888762 1 122556789999999999999999884
No 482
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=36.42 E-value=4.8e+02 Score=26.55 Aligned_cols=70 Identities=27% Similarity=0.261 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHH-HHHHHHHhhhhhhh-hchHHHHHHHHHHHHHHHHHHHhh
Q 002589 324 LYEKVENLQGLLAKATKQADQA-ISVLQQNQELRKKV-DKLEESLDEANIYK-LSSEKMQQYNELMQQKMKLLEERL 397 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (904)
-.+.|..++..+..+.+++..- ..+-+-..+|++.+ -.+|.. .+.. -.-.-||.-.+-.++||+.||..+
T Consensus 55 ~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~----i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 55 AFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETK----IINQPSNIRVLQNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHH----HhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777776665553321 22222333444444 222211 1111 111234555566677777777654
No 483
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.31 E-value=89 Score=34.49 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccC
Q 002589 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQ 230 (904)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (904)
..||.||+.++.+++... |...+ .--.+|++|++||......+++ |.+..+-+.+
T Consensus 67 ~~L~~ev~~~~~~~~s~~-~~~~t-----~~~~ie~~l~~l~~~aG~v~V~-G~Gl~ITi~d 121 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR-RSVLT-----DDAALEDRLEKLRMLAGSVPVT-GPGLVITIDD 121 (247)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHh-----HHHHHHHHHHHHHHHhccCCCc-CCcEEEEecC
Confidence 345555555555554433 22222 2236789999999999998887 4455444433
No 484
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=36.12 E-value=6.1e+02 Score=27.72 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhhcch
Q 002589 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLSISQ 308 (904)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 308 (904)
|..++.+|+.++.-|..-+++|..+...=.+. ..|.....+|++.+-.++
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~ 132 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSS 132 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCC
Confidence 45788889999999988888888776654443 346677777777776655
No 485
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.98 E-value=4.7e+02 Score=29.36 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhh-hhhHhhhHHHHHHH
Q 002589 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQE-KIHVELLEDQLQKL 209 (904)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 209 (904)
.++++..+.+.++++|+.++..+.+....|+...+- +-+-+++++++..+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666544321 22445666665544
No 486
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=2.8e+02 Score=27.33 Aligned_cols=99 Identities=18% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccc
Q 002589 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANED 237 (904)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (904)
.+.++++-++.+.--.--..|||+|.|. .+.-++|..|
T Consensus 11 ~~kyq~LQk~l~k~~~~rqkle~qL~En--------------k~V~~Eldll---------------------------- 48 (120)
T KOG3478|consen 11 ANKYQNLQKELEKYVESRQKLETQLQEN--------------KIVLEELDLL---------------------------- 48 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHh----------------------------
Q ss_pred cccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc
Q 002589 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL 314 (904)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (904)
..|+.|.-|.- +.++|.|++.-++ +-++|+--..+|-..+++++++++.++..-.+-|.++
T Consensus 49 --e~d~~VYKliG--------pvLvkqel~EAr~------nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 49 --EEDSNVYKLIG--------PVLVKQELEEART------NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred --cccchHHHHhc--------chhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=35.93 E-value=2.5e+02 Score=31.72 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=65.4
Q ss_pred HHhhhcCEEEEcCHHHHHHHHhhcCCCCcccccccCCCeEEEEecCccCCCCCCCccchhhhccccccccchhhhHHHHH
Q 002589 720 GAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIR 799 (904)
Q Consensus 720 ~ai~~AD~VItVS~syaeeI~~~~~g~GL~~~L~~~~~Ki~VIPNGID~d~F~P~~d~~L~~~ys~ddl~gK~~~K~aLR 799 (904)
......|.+++.|+...+.+.. .++ .+..++ +..|. |..|..... ....+..++
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~-~f~--------~~~~~i--~~~G~------PR~D~l~~~---------~~~~~~~i~ 183 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKK-AFG--------YPEDKI--LVTGY------PRNDYLFNK---------SKENRNRIK 183 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHH-HTT----------GGGE--EES--------GGGHHHHHS---------TT-HHHHHH
T ss_pred hhccCCcEEEECCHHHHHHHHH-Hhc--------cCcceE--EEeCC------CeEhHHhcc---------CHHHHHHHH
Confidence 3455689999999887766554 333 233443 44554 433322211 112256788
Q ss_pred HHcCCCCCCCCCcEEEEEecccCccCH------HH--HHHHHHHhhcCCcEEEEEecCCc----c-------cc---c--
Q 002589 800 KHLGLSSADARKPLVGCITRLVPQKGV------HL--IRHAIYRTLELGGQFILLGSSPV----P-------HI---Q-- 855 (904)
Q Consensus 800 k~LGL~~~d~d~plVgfVGRL~~qKGI------dl--LIeAiarLle~nvqLVLVGdGp~----~-------~l---e-- 855 (904)
+.+|++. ++++|+|+-.+.....- .. -.+.+..+.+.++.+++-...-. . .+ .
T Consensus 184 ~~~~~~~---~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~ 260 (369)
T PF04464_consen 184 KKLGIDK---DKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN 260 (369)
T ss_dssp HHTT--S---S-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-
T ss_pred HHhccCC---CCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCC
Confidence 8899874 56788888655432222 11 22333334445777777654110 0 00 0
Q ss_pred --HHHHHHhcCeEEEcCCCCCChHHHHHHccCCcccc
Q 002589 856 --VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 890 (904)
Q Consensus 856 --ke~LyAaADVfVlPS~~EpFGLv~LEAMg~gl~V~ 890 (904)
-..++..||++|- -++=+..|++.++-||+
T Consensus 261 ~~~~~ll~~aDiLIT-----DySSi~fD~~~l~KPii 292 (369)
T PF04464_consen 261 EDIYDLLAAADILIT-----DYSSIIFDFLLLNKPII 292 (369)
T ss_dssp S-HHHHHHT-SEEEE-----SS-THHHHHGGGT--EE
T ss_pred CCHHHHHHhcCEEEE-----echhHHHHHHHhCCCEE
Confidence 1189999999886 23446788888888885
No 488
>PLN03188 kinesin-12 family protein; Provisional
Probab=35.86 E-value=4.7e+02 Score=35.21 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc--------
Q 002589 145 KNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-------- 216 (904)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (904)
|.|.|-.+.|+ +|+.-..--|.|+-|+..=.+=-.|.+.-|..|.+|-.+.-=--.+|+..-+.|..+
T Consensus 1062 ~wislteelr~----eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi 1137 (1320)
T PLN03188 1062 KWISLAEELRT----ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGI 1137 (1320)
T ss_pred hheechHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh----hccchhHHHHHHHHhhhhhhhhhH
Q 002589 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADER 282 (904)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 282 (904)
|+-- ...-.+.+|.-|+..||-| ...||+.=..|+.+|.+.||.-.
T Consensus 1138 ~dvkkaaakag~kg-------------------~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~- 1197 (1320)
T PLN03188 1138 DDVKKAAARAGVRG-------------------AESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ- 1197 (1320)
T ss_pred HHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 002589 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (904)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (904)
+-=|-+-.|..-=..+|-.-+.|..+.|.|..+-+++|||
T Consensus 1198 ----------------------------------------aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1198 ----------------------------------------AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 002589 363 E 363 (904)
Q Consensus 363 ~ 363 (904)
+
T Consensus 1238 k 1238 (1320)
T PLN03188 1238 K 1238 (1320)
T ss_pred H
No 489
>PRK13411 molecular chaperone DnaK; Provisional
Probab=35.79 E-value=1.6e+02 Score=36.69 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002589 264 NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 304 (904)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (904)
++++.++.++...++.|+....++.-+..||+-+-+++.++
T Consensus 505 ~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 505 NEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444444444444443
No 490
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.58 E-value=42 Score=36.01 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 529 GLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 529 GLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
|+|.+-..+|+.|.+.||+|.+|-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 67899999999999999999999544
No 491
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.50 E-value=38 Score=31.55 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=37.8
Q ss_pred hhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHh
Q 002589 172 QGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE 251 (904)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (904)
+.||.-+|.+++..-.++....----..+|-.++-+.|.+|+..- ...++..-++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l-------------------------~~~l~~~E~e 58 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNEL-------------------------KEKLENNEKE 58 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHH-------------------------HHHhhccHHH
Confidence 456677777777666666554443344455555555555554431 2223455788
Q ss_pred hhhhhhhhc
Q 002589 252 LDSLKTENL 260 (904)
Q Consensus 252 ~~~~~~~~~ 260 (904)
|..|+.||.
T Consensus 59 L~~LrkENr 67 (85)
T PF15188_consen 59 LKLLRKENR 67 (85)
T ss_pred HHHHHHhhh
Confidence 999999885
No 492
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.48 E-value=9.9e+02 Score=29.95 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002589 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (904)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (904)
|++.++..-+.+.-+.+ ++++=...-..++ +++..|.+-...++. -|+.+-+++..--.-..+++-.+.++||.
T Consensus 108 ~~~~~~~~~~~~~~~~~---~~e~e~~~~~~k~--~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 108 AKDTYEVLCAKSNYLHR---CQEKESLKEKEKR--KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhhhcccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444433333 4444433333333 677777766665543 46666666666666677888888888876
Q ss_pred chHH----HHHHHHHHHHHHHHHHH
Q 002589 400 SDEE----IHSYVQLYQESVKEFQD 420 (904)
Q Consensus 400 ~~~~----~~~~~~~~~~~~~~~~~ 420 (904)
-.+. +.+-+.+|+..+.+=..
T Consensus 183 ~Ee~rl~~lk~~l~~~~~~is~~~~ 207 (611)
T KOG2398|consen 183 IEESRLSFLKEELWLFANQISESCV 207 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5543 44444555555444333
No 493
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.44 E-value=6e+02 Score=27.45 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=6.9
Q ss_pred hhhhHHHhhhhch
Q 002589 173 GEINALEMRLAET 185 (904)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (904)
|||--|..-|-|+
T Consensus 10 GEIsLLKqQLke~ 22 (202)
T PF06818_consen 10 GEISLLKQQLKES 22 (202)
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555444
No 494
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.11 E-value=3.6e+02 Score=25.44 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 002589 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (904)
.+...||.-+...+.+-.+.-.-+..|.+..+.+..|+ ..+.+|+.--. =++..-+.-+.+.+...-+.|.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~------vfv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN------VLVKQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh------HHhhccHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333444444444433333 56677765443 2444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhh
Q 002589 406 SYVQLYQESVKEFQDTLHSLKEE 428 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (904)
+-++....+++..+..+.+++.+
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666655555543
No 495
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.73 E-value=3.8e+02 Score=28.31 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=28.2
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 002589 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (904)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (904)
+-.+-++.+.|++|-.-..+-|..+|+-..+|..-|..-+.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 33556677777777777777777777777777766654443
No 496
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.60 E-value=2.4e+02 Score=28.04 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=33.3
Q ss_pred hccchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 002589 259 NLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQED 310 (904)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (904)
|.+.|-+-..++.+|.+-+++ +-|+..|++.-..++..+++|.+++..+..+
T Consensus 61 ~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 61 NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666665554 4467777777777777777777766555443
No 497
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=34.54 E-value=8.4e+02 Score=28.85 Aligned_cols=102 Identities=25% Similarity=0.190 Sum_probs=61.3
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc---------hhhhhccccchhhhhhHHHHH
Q 002589 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS---------QEDVAKLSTLKVECKDLYEKV 328 (904)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 328 (904)
.--.|.+|...|-.... ++-+..-.|++.-+.-+.++++||+++... |-||-+++.+..=--.|-..|
T Consensus 156 ~kd~L~~dn~~Le~l~~---~n~~~~~~L~~yI~agel~~eel~~~i~~~~~~ka~~~~q~~v~~v~~~~~~~~~L~qRv 232 (386)
T COG3853 156 GKDELTRDNKMLELLYE---KNREYFEHLEKYIAAGELKDEELETEIIPELKTKAESGNQMDVQQVNELTLFINRLEQRV 232 (386)
T ss_pred hhHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 33446666666665543 355677889999999999999999765432 333444444443322344444
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 002589 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (904)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (904)
-.|+..+-=|-..+-|--++-.-|++|.+||+..
T Consensus 233 ~Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~sa 266 (386)
T COG3853 233 YDLLLARMVALQTAPQIRLIQRNNQELIEKIQSA 266 (386)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHH
Confidence 4555444444444444445555688888888764
No 498
>PRK10037 cell division protein; Provisional
Probab=34.53 E-value=49 Score=35.49 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=27.0
Q ss_pred CeEEEEcCccCCCcCCCcHH--HHHHHHHHHHHHCCCeEEEE
Q 002589 512 LHVIHIAAEMAPVAKVGGLG--DVVAGLGKALQKKGHLVEIV 551 (904)
Q Consensus 512 MkILhIt~E~~P~akvGGLg--~vV~~LarAL~k~GHeV~VI 551 (904)
|+|+-++.. -||+| +.+.+||.+|+++|+.|-||
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 677777662 47665 45688999999999999999
No 499
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.49 E-value=48 Score=34.51 Aligned_cols=51 Identities=37% Similarity=0.528 Sum_probs=19.8
Q ss_pred hhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhh
Q 002589 133 LDNLISMIR-NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI 197 (904)
Q Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (904)
||||=.+.- -.|+|.+|=++ |.|||.|+-+++-|.-.+. |-++.++.|++.
T Consensus 2 LeD~EsklN~AIERnalLE~E------------LdEKE~L~~~~QRLkDE~R--DLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE------------LDEKENLREEVQRLKDELR--DLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 566666553 34666665433 3788888888877766665 334444555444
No 500
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.35 E-value=49 Score=36.50 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002589 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (904)
Q Consensus 528 GGLg~vV~~LarAL~k~GHeV~VItP~ 554 (904)
||.|..=..|+++|.++||+|++++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 667777788899999999999999754
Done!