Query 002590
Match_columns 903
No_of_seqs 119 out of 234
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 03:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 1.3E-57 2.7E-62 497.2 4.7 496 105-687 2-499 (499)
2 KOG1043 Ca2+-binding transmemb 99.9 6.3E-25 1.4E-29 241.6 7.5 99 775-877 121-221 (499)
3 PF07766 LETM1: LETM1-like pro 99.9 1.3E-24 2.9E-29 222.8 1.0 108 774-885 2-111 (268)
4 KOG4263 Putative receptor CCR1 93.7 0.15 3.3E-06 54.9 6.6 83 777-863 54-140 (299)
5 KOG2077 JNK/SAPK-associated pr 74.8 6.4 0.00014 46.9 6.5 68 523-614 306-374 (832)
6 PF11004 Kdo_hydroxy: 3-deoxy- 43.8 20 0.00044 39.5 3.1 47 420-474 8-54 (281)
7 PF08580 KAR9: Yeast cortical 40.2 51 0.0011 40.1 5.9 52 563-614 55-119 (683)
8 PF05205 COMPASS-Shg1: COMPASS 33.9 74 0.0016 30.1 4.8 94 103-219 11-104 (106)
9 cd09236 V_AnPalA_UmRIM20_like 30.5 4.5E+02 0.0098 29.3 10.8 99 506-625 114-223 (353)
10 PF13949 ALIX_LYPXL_bnd: ALIX 29.7 81 0.0018 33.0 4.8 97 508-624 68-171 (296)
11 PF09177 Syntaxin-6_N: Syntaxi 27.9 2.6E+02 0.0055 25.7 7.1 60 563-622 3-64 (97)
12 COG4306 Uncharacterized protei 27.5 73 0.0016 32.3 3.8 47 789-836 74-120 (160)
13 PF12761 End3: Actin cytoskele 27.3 1.6E+02 0.0034 31.4 6.3 72 555-629 100-192 (195)
14 PRK00420 hypothetical protein; 23.8 1.5E+02 0.0033 29.0 5.1 43 567-610 67-111 (112)
15 PF13815 Dzip-like_N: Iguana/D 20.2 3.9E+02 0.0085 25.5 7.0 10 604-613 108-117 (118)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=1.3e-57 Score=497.23 Aligned_cols=496 Identities=30% Similarity=0.304 Sum_probs=463.7
Q ss_pred HHHHHHHhhccccCCCcccchHHHHHHHHHHHHHHHHhhcccCCccccccccccchhhhHHHHhhHHHHHHHHHHHHhhh
Q 002590 105 VEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEI 184 (903)
Q Consensus 105 ~~e~r~kl~~slq~~~~~~~LVq~LHdaAr~felav~~~~~~s~~swl~~aWlg~D~naW~K~LsYQaaVysLLqaaiei 184 (903)
...||.++-+++|++..+..+- +++|.+++|..+....+..+ +|.++|+++.+||+++|+++|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~g~r~~~~~~~~~~t~~~~~--------~d~~~~~~~~s~~~s~~~~~~~~~~~ 69 (499)
T KOG1043|consen 2 SSVYRSKLLGSLQDENNEGILR----DGARFRELATKEKITSSRLP--------VDKLAWVKTESYKASLYSLLQAVNLI 69 (499)
T ss_pred hhHHHHHHhccccccccchhhh----hhHHHHHHHHHhhccccccc--------HHHHHHHhhhccchhhhhhhhhcccc
Confidence 5689999999999999888877 99999999999999999988 99999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHhhhhhchhHHHHHhHhhccCCccchhhhcccchhhhhHhhhccccccccccccccccCCccc
Q 002590 185 SSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSL 264 (903)
Q Consensus 185 ssrg~~rDRdvnvfVqrsL~~~~apLe~~Ir~~Ls~r~P~~~eWfws~Q~P~vv~sFvn~le~d~rf~~at~~~~~~~~~ 264 (903)
+++|+.+|.+.|++|+|++.+.-+|+...|+..||+.||+.++|+|.+++|..+..|+ ++++||..+|.++..+...
T Consensus 70 ~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~~~~~a~~k~s~~~~~~---~~lqhy~~gtkll~~e~ki 146 (499)
T KOG1043|consen 70 SARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKTEAFWAKEKPSLKTKFV---KGLQHYVDGTKLLGKEIKI 146 (499)
T ss_pred ccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhccccccccCccHHHHHH---HhhHHHhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 8999999999998887765
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcCCcccccccchhhhhHHHHHHHhhhccceehhhHHHHHhhhhhhHHHHhhcCCCcc
Q 002590 265 GSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRAS 344 (903)
Q Consensus 265 ~~~~~SdvslL~Lalsc~aAi~kLGsa~vSCp~F~S~i~d~~grLMdml~~fVpv~q~Y~~~k~iGl~rEFL~hFGpraa 344 (903)
++. .|++++..|..+..+.|+.+-+||.||.+||+.. .-+||..++|+-+.-.+|.++|.+|||+++.
T Consensus 147 sak-----lLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~-------flivPf~El~Lp~~lKlfp~~lpstfq~~kk 214 (499)
T KOG1043|consen 147 SAK-----LLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSK-------FLIVPFMELLLPIFLKLFPNDLPSTFQESKK 214 (499)
T ss_pred hHH-----HHHHHHccCeeeHHHhhhHHhhccchheecccee-------eeeeehHHHHhHHHHhhccccchhhHHHHHH
Confidence 422 8999999999999999999999999999999988 7899999999999999999999999999999
Q ss_pred cccccCCCCccceehhHHHHHHHHHHHHhHhhhhhccccchhHHHHhhhhhHHHHHHHhccchhhhhhcCCCCCcchhHH
Q 002590 345 ACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIK 424 (903)
Q Consensus 345 ~~~~~~d~~~eEv~FWI~L~QkqL~~AidRE~IwsrL~tsesiEvlE~dLAifGfFiaLGRsTr~fLs~~g~~~ldd~i~ 424 (903)
.|.++++ ..+|+.||.+++|++|+++++++++|+++.++++| +++++++.||| +++|.+|+.++.-+++-+.|-+++
T Consensus 215 ~~~k~~k-~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~Ld 291 (499)
T KOG1043|consen 215 EEEKLSK-KYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-EFDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLD 291 (499)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-HHHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhh
Confidence 9999999 88999999999999999999999999999999999 99999999999 999999999999999999999999
Q ss_pred HHHHHHHcceEEEecccCccc--ceeeeeeeeeccccccccCCCCCCCCCCccCCCCCCCCCCCcccchhhhhhhhHhhh
Q 002590 425 SLIRYLIGGSVLYYPQLSSIS--SYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQ 502 (903)
Q Consensus 425 ~~lrYL~gGsvl~YPQLSsIs--sYQLyvEVVcEEl~WLpFYp~~~~~~~~~~~h~~~~~~~~~~e~i~~vl~VCs~w~~ 502 (903)
++.|..++|...|||+.+-++ +|+.|+ -
T Consensus 292 nLsR~qL~al~k~m~l~~~Gt~~~lr~~l--------------------------------------------------r 321 (499)
T KOG1043|consen 292 NLSRPQLVALCKYMDLNSFGTDKLLRYQL--------------------------------------------------R 321 (499)
T ss_pred ccCHHHHHHHHHhhcccccCchHHHHHHH--------------------------------------------------H
Confidence 999999999999999988775 555443 4
Q ss_pred hhhhhcccccCCCchhHHHHHhhhhhhHHHHHHHhhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 002590 503 SFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQ 582 (903)
Q Consensus 503 sFikyS~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~al~rlE~Llq 582 (903)
+||+|.+|-.+|.++++|.++++++.+...|.++.+.+..-.++...++ .+.-...++|+++.+|..+|.|.+.+++
T Consensus 322 ~kik~ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~q---l~~wldlsl~~~vps~lL~Lsr~~~~~~ 398 (499)
T KOG1043|consen 322 KKIKEIKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLREQ---LRVWLDLSLDKKVPSVLLLLSRTFSLGQ 398 (499)
T ss_pred HHHHHhcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhhHH---HHHHHhhhccccCchHHHHHhhhhhhhh
Confidence 6899999999999999999999999999999999988875444422222 2334556899999999999999999999
Q ss_pred HhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccccCCCcccccccccCC
Q 002590 583 ALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRP 662 (903)
Q Consensus 583 el~~sss~sgke~l~aacsdLekIr~LkkeaEfleasfraka~~l~~g~~~~~~~~~~~~~~~~~~~k~~~~~~v~~d~~ 662 (903)
+.+.++|.+|+.+. ++|+|+++++++|++++++++++|+++..+++++++...+++-.++.+|..+|+.++.+..-++.
T Consensus 399 ~~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k~~~~~~~~~~~~ 477 (499)
T KOG1043|consen 399 NSKAPSSSSGKLQI-AAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAKDALKEKESAEKA 477 (499)
T ss_pred cccCCchhhhHhhh-hccccHHHhcccccccccccccchHHHHHhhhccccccchhhhccccccccccccccCCCccccc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999888777
Q ss_pred ccccccccCcccccccCCCCCCCCC
Q 002590 663 NEVVCKSRGLFGFFTRPSIRKPKPQ 687 (903)
Q Consensus 663 ~~~~~~~~~~w~~f~r~~~~k~~p~ 687 (903)
. ....++|++|.+....++.|+
T Consensus 478 ~---~~~~s~~~~~~~~~~~~~~~~ 499 (499)
T KOG1043|consen 478 A---SQAKSPWGFFVRQERKKALPE 499 (499)
T ss_pred c---cccccccccccchhhhcccCC
Confidence 6 678899999999999998864
No 2
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=99.91 E-value=6.3e-25 Score=241.56 Aligned_cols=99 Identities=26% Similarity=0.449 Sum_probs=94.6
Q ss_pred HHHHHHHhhcceeeehhhhhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccceeeeeccchhhhhHHHHHH
Q 002590 775 KSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAA 854 (903)
Q Consensus 775 k~~~KiKee~~hYw~G~KLL~~DIkiS~rLL~R~l~G~~LTRRErkqL~RT~~DLfRLVPFsiFIIIPf~E~GHalLLPv 854 (903)
.++++++++++|||+||||||+|+++|.+++++.+.|++|||||++||+||+.|+||||||++|+||||||+ +||+
T Consensus 121 s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~flivPf~El----~Lp~ 196 (499)
T KOG1043|consen 121 SLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSKFLIVPFMEL----LLPI 196 (499)
T ss_pred cHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchheeccceeeeeeehHHH----HhHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHcCCCCCCCCchh--HHHHHHH
Q 002590 855 IQRYVPGLIPSTYGPE--RLDLLRQ 877 (903)
Q Consensus 855 ilKlFPnMLPSTFese--R~eklrq 877 (903)
++|+||||+||||++. ++++..+
T Consensus 197 ~lKlfp~~lpstfq~~kk~~~k~~k 221 (499)
T KOG1043|consen 197 FLKLFPNDLPSTFQESKKEEEKLSK 221 (499)
T ss_pred HHhhccccchhhHHHHHHHHHHhhh
Confidence 9999999999999994 6666666
No 3
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=99.89 E-value=1.3e-24 Score=222.78 Aligned_cols=108 Identities=29% Similarity=0.529 Sum_probs=4.7
Q ss_pred HHHHHHHHhhcceeeehhhhhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccceeeeeccchhhhhHHHHH
Q 002590 774 GKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLA 853 (903)
Q Consensus 774 kk~~~KiKee~~hYw~G~KLL~~DIkiS~rLL~R~l~G~~LTRRErkqL~RT~~DLfRLVPFsiFIIIPf~E~GHalLLP 853 (903)
++.|.+++++.+|||+|+|+||.|++++.+|..|+..|+.||+||+++++||..|++|+|||++|++|||+++ +||
T Consensus 2 ~~~~~~~~~~~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~~kliP~~i~~~iPf~~~----llp 77 (268)
T PF07766_consen 2 EKLWPKAKKEYKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDLLKLIPFLIFLIIPFAEY----LLP 77 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHcCCCCCCCCchh--HHHHHHHHHHHHhhh
Q 002590 854 AIQRYVPGLIPSTYGPE--RLDLLRQLEKVKEME 885 (903)
Q Consensus 854 vilKlFPnMLPSTFese--R~eklrqL~kvKkm~ 885 (903)
++++|||+||||||.+. |.+..++..+.|+..
T Consensus 78 ~~~~~fP~lLPstF~~~~q~~~~~~~~~~~r~~~ 111 (268)
T PF07766_consen 78 LLVKYFPNLLPSTFWSPSQREEFLKKRLKARKEL 111 (268)
T ss_dssp --------------------------HHHHHHHH
T ss_pred HHHHHhhhcChHHHcccchHHHHHHHHHHHhHhh
Confidence 99999999999999994 666666666666543
No 4
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=93.68 E-value=0.15 Score=54.90 Aligned_cols=83 Identities=16% Similarity=0.283 Sum_probs=68.2
Q ss_pred HHHHHhhcceeeehhhhhHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHhhhcccccceeeeeccchhhhhHHHH
Q 002590 777 IDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVG----DELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAML 852 (903)
Q Consensus 777 ~~KiKee~~hYw~G~KLL~~DIkiS~rLL~R~l~G----~~LTRRErkqL~RT~~DLfRLVPFsiFIIIPf~E~GHalLL 852 (903)
|-|+-..-.-+..|.|-+|.|+|.+.++-.-+..| +.|+++|-..++.--.|.-+..|.+||.++|++.. ++
T Consensus 54 fPk~~~Lyr~f~~G~~~~faD~K~~~kikr~~~~~~~k~~~L~~~ElE~l~Qmp~d~~K~a~~~i~~~~P~~~Y----~f 129 (299)
T KOG4263|consen 54 FPKVLALYRTFLEGSRWCFADVKMYFKIKRAVATGQKKLTDLSVEELETLVQMPVDGPKMAIVTIFLPVPLSVY----VF 129 (299)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCccchhhCCHHHHHHHHhccccccceeeeeeccCcchHHH----HH
Confidence 34444444446689999999999999988777766 46999999999999999999999999999999988 56
Q ss_pred HHHHHHcCCCC
Q 002590 853 AAIQRYVPGLI 863 (903)
Q Consensus 853 PvilKlFPnML 863 (903)
-+++-|||..+
T Consensus 130 f~li~~fPR~~ 140 (299)
T KOG4263|consen 130 FFLIIFFPRLV 140 (299)
T ss_pred HHHHHHHHHHH
Confidence 66667888654
No 5
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.78 E-value=6.4 Score=46.95 Aligned_cols=68 Identities=29% Similarity=0.478 Sum_probs=49.1
Q ss_pred HhhhhhhHHHHHHHhhhcccccc-ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHHHhhh
Q 002590 523 LSKGYDKLMDCMKEMGIARNGMI-ESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACS 601 (903)
Q Consensus 523 Lskg~~~L~eC~ee~~~~~~~~~-~~~~~~~~~~~~~e~~s~dkalesv~~al~rlE~Llqel~~sss~sgke~l~aacs 601 (903)
|++-.+.|.+-..-|+|.+|+.. ++.+-. .|-+...-.+|+++.|-++||+-..||.
T Consensus 306 LilENsqLLetKNALNiVKNDLIakVDeL~------~E~~vLrgElea~kqak~Klee~i~elE---------------- 363 (832)
T KOG2077|consen 306 LILENSQLLETKNALNIVKNDLIAKVDELT------CEKDVLRGELEAVKQAKLKLEEKIRELE---------------- 363 (832)
T ss_pred HHHhhHHHHhhhhHHHHHHHHHHHHHHhhc------cHHHHHhhHHHHHHHHHHHHHHHHHHHH----------------
Confidence 44556778888889999998844 333322 2445677789999999999998877764
Q ss_pred hHHHHHHHHHHHH
Q 002590 602 DLEKIRKLKKEAE 614 (903)
Q Consensus 602 dLekIr~LkkeaE 614 (903)
|.||++|.||+
T Consensus 364 --EElk~~k~ea~ 374 (832)
T KOG2077|consen 364 --EELKKAKAEAE 374 (832)
T ss_pred --HHHHHHHHHHH
Confidence 55788888776
No 6
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=43.80 E-value=20 Score=39.52 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHcceEEEecccCcccceeeeeeeeeccccccccCCCCCCCCCCc
Q 002590 420 DDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQS 474 (903)
Q Consensus 420 dd~i~~~lrYL~gGsvl~YPQLSsIssYQLyvEVVcEEl~WLpFYp~~~~~~~~~ 474 (903)
.++=++.++-||+|.|||+|+|. .+.-|+|-.-|.=.-.+....|.+
T Consensus 8 ~~~~~~~~~~LE~G~VL~fP~l~--------F~l~~~E~~fL~p~~~d~k~KNIs 54 (281)
T PF11004_consen 8 EEPQRDAIEALEQGKVLYFPQLR--------FPLSPEERAFLDPAIVDPKRKNIS 54 (281)
T ss_pred cchHHHHHHHhhCCCEEEeCCCC--------CCCChhHHhhcChhhhCCCCCcee
Confidence 56678899999999999999875 566788887765444444455554
No 7
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=40.17 E-value=51 Score=40.13 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hccc---CcchHHHHHHhhhhHHH-----HHHHHHHHH
Q 002590 563 FDKALESVEEALIRLEKLLQAL-----HVSS---SNSGKEQLKAACSDLEK-----IRKLKKEAE 614 (903)
Q Consensus 563 ~dkalesv~~al~rlE~Llqel-----~~ss---s~sgke~l~aacsdLek-----Ir~LkkeaE 614 (903)
+.+-++.||.|+.|||.|+... ++.. -+.+.++|..+|+|++- |+.+|+-+|
T Consensus 55 L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qve 119 (683)
T PF08580_consen 55 LREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQVE 119 (683)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999774 2221 01178999999999998 777777654
No 8
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=33.88 E-value=74 Score=30.09 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=66.4
Q ss_pred chHHHHHHHhhccccCCCcccchHHHHHHHHHHHHHHHHhhcccCCccccccccccchhhhHHHHhhHHHHHHHHHHHHh
Q 002590 103 SDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAAC 182 (903)
Q Consensus 103 s~~~e~r~kl~~slq~~~~~~~LVq~LHdaAr~felav~~~~~~s~~swl~~aWlg~D~naW~K~LsYQaaVysLLqaai 182 (903)
+-++.+|-.+-.-....+...-|.+.+.+.+..+ ..+.+|+++. -+..+.+||+.++
T Consensus 11 G~FD~lRk~~l~~~~~~~~~~~l~~~v~~~v~~~---------l~~~~~l~~~--------------nk~k~~alI~~~i 67 (106)
T PF05205_consen 11 GHFDKLRKECLADFDTSPAYQNLRQRVEEIVESE---------LERDPWLLSK--------------NKGKARALIEGAI 67 (106)
T ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---------HhcCcccCCc--------------chHHHHHHHHHHH
Confidence 4467778776555544555556666666665544 2244555432 2356778999999
Q ss_pred hhhccCCCCCCcchHHHHHHhhhhhchhHHHHHhHhh
Q 002590 183 EISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLS 219 (903)
Q Consensus 183 eissrg~~rDRdvnvfVqrsL~~~~apLe~~Ir~~Ls 219 (903)
+=+.--.+.|+.|..+|...+..+...+|+.|++.|.
T Consensus 68 ~rs~~~~~~e~~i~~~vd~~l~~~~~~ie~~~~~~l~ 104 (106)
T PF05205_consen 68 DRSGVYKGVERIIDQVVDPKLNEIRPSIEEIIREELG 104 (106)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887777789999999999999888889999998875
No 9
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=30.46 E-value=4.5e+02 Score=29.29 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=58.1
Q ss_pred hhc--ccccCCCchhHHHHHhhhhhhHHHHHHHhhhccccccccccccccccccccchhHHHHHHHHHHHHHHH----HH
Q 002590 506 KHS--KWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRL----EK 579 (903)
Q Consensus 506 kyS--~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~al~rl----E~ 579 (903)
||- +|.+.||..-++.+-.+ +.+..+-|.-+. ..+ ....+.++..+..+.-| +.
T Consensus 114 k~g~~~Wtr~~S~~~~~~l~~~----~~~~~~~L~~A~-------~sD---------~~v~~k~~~~~~~l~lL~~~~~~ 173 (353)
T cd09236 114 KFGTDRWTRPDSHEANPKLYTQ----AAEYEGYLKQAG-------ASD---------ELVRRKLDEWEDLIQILTGDERD 173 (353)
T ss_pred HcCCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHH-------hhH---------HHHHHHHHHHHHHHHHHcCCHHH
Confidence 786 79999999888776543 333444443322 111 01223333333332222 11
Q ss_pred HHHHhhcccCc-----chHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002590 580 LLQALHVSSSN-----SGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAA 625 (903)
Q Consensus 580 Llqel~~sss~-----sgke~l~aacsdLekIr~LkkeaEfleasfraka~ 625 (903)
|-+.+. +++. +.+.++...+.-|+++..||+|=+-++..+|.|+.
T Consensus 174 l~~~~P-s~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 174 LENFVP-SSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHhCC-CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122 2222 34677888888888899999999999999998877
No 10
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=29.71 E-value=81 Score=32.98 Aligned_cols=97 Identities=30% Similarity=0.330 Sum_probs=51.9
Q ss_pred cccccCCCchhHHHHHhhhhhhHHHHHHHhhhccccccccccccccccccccchhHHHHHHHHHHHHH-------HHHHH
Q 002590 508 SKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALI-------RLEKL 580 (903)
Q Consensus 508 S~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~al~-------rlE~L 580 (903)
.+|.+.||..-++.|-. .|..+.+-+.-+. .++. ...+.++..+..+. -|+..
T Consensus 68 ~~W~r~~S~~~~~~l~~----~l~~~~~~L~~A~-------~sD~---------~~~~~~~~~~~~l~~L~~~~~~L~~~ 127 (296)
T PF13949_consen 68 ERWTRPPSSELNASLRK----ELQKYREYLEQAS-------ESDS---------QLRSKLESIEENLELLSGPIEELEAS 127 (296)
T ss_dssp TTCGSS-HHHHCHHHHH----HHHHHHHHHHHHH-------HHHH---------HHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred CCCcCCCcHhhHHHHHH----HHHHHHHHHHHHH-------hhHH---------HHHHHHHHHHHHHHHHcCChhhHHhh
Confidence 48999999887776643 4444555444433 1110 11222333333332 24444
Q ss_pred HHHhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002590 581 LQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKA 624 (903)
Q Consensus 581 lqel~~sss~sgke~l~aacsdLekIr~LkkeaEfleasfraka 624 (903)
+-......+....+.++....=|+++..|+++-+-+..-+|.|+
T Consensus 128 lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 128 LPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp S--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444334455577777777778888888888888888888644
No 11
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=27.89 E-value=2.6e+02 Score=25.66 Aligned_cols=60 Identities=30% Similarity=0.356 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccCcchHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHH
Q 002590 563 FDKALESVEEALIRLEKLLQALHV-SSSNSGKEQLKAACSDLEK-IRKLKKEAEFLEASVRA 622 (903)
Q Consensus 563 ~dkalesv~~al~rlE~Llqel~~-sss~sgke~l~aacsdLek-Ir~LkkeaEfleasfra 622 (903)
|.-+-+-|..++.++|.+++...- .+.+++.+.++.+..||.. |+.|+...+-|+.+.+.
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999999887543 3333355666666666653 56777779999988874
No 12
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.52 E-value=73 Score=32.31 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=37.8
Q ss_pred ehhhhhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccce
Q 002590 789 QGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIG 836 (903)
Q Consensus 789 ~G~KLL~~DIkiS~rLL~R~l~G~~LTRRErkqL~RT~~DLfRLVPFs 836 (903)
-|.+.=|.+.+++...-. +-.|..|++.|++|++.+++|+.+=-|=.
T Consensus 74 cgs~fpwterkiaga~el-vea~~~l~pdevqqf~tdlt~ltkdspkt 120 (160)
T COG4306 74 CGSRFPWTERKIAGAVEL-VEAGENLNPDEVQQFRTDLTDLTKDSPKT 120 (160)
T ss_pred CCCCCCcHHHHHhHHHHH-HHccccCCHHHHHHHHhhHHHHhhcCchh
Confidence 477788888888776544 45799999999999999999998766543
No 13
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=27.26 E-value=1.6e+02 Score=31.40 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=49.5
Q ss_pred cccccchhHHHHHHHHHHH-------------HH--HHHHHHH--Hhhccc----CcchHHHHHHhhhhHHHHHHHHHHH
Q 002590 555 RTEIDSDSFDKALESVEEA-------------LI--RLEKLLQ--ALHVSS----SNSGKEQLKAACSDLEKIRKLKKEA 613 (903)
Q Consensus 555 ~~~~e~~s~dkalesv~~a-------------l~--rlE~Llq--el~~ss----s~sgke~l~aacsdLekIr~Lkkea 613 (903)
+..+|++..|.-|+.|+.+ |+ .+|.||. +-.+.. .+.+...|+....||+.| +..+
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~i---e~QV 176 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTI---EEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHH---HHHH
Confidence 3445677777777776654 43 2567763 222322 224457888999999988 6789
Q ss_pred HHHHHHHHHHHhhhhc
Q 002590 614 EFLEASVRAKAASLQQ 629 (903)
Q Consensus 614 Efleasfraka~~l~~ 629 (903)
+.||.-++.|-..|++
T Consensus 177 ~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQ 192 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888876
No 14
>PRK00420 hypothetical protein; Validated
Probab=23.80 E-value=1.5e+02 Score=28.97 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=29.7
Q ss_pred HHHHHHHHH-HHHHHHHHhhcccCcch-HHHHHHhhhhHHHHHHHH
Q 002590 567 LESVEEALI-RLEKLLQALHVSSSNSG-KEQLKAACSDLEKIRKLK 610 (903)
Q Consensus 567 lesv~~al~-rlE~Llqel~~sss~sg-ke~l~aacsdLekIr~Lk 610 (903)
++.|++.|. +++.|...|.=. ...+ -.+|-.+..-|+|||+++
T Consensus 67 ~~~~~~il~~ki~~L~~kL~~e-~~~~ri~Ei~~~l~~l~ki~~~~ 111 (112)
T PRK00420 67 LKEVEEVLIEKINYLAKKLKED-EDIERITEIIRYLEVLERIRKIK 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence 566666666 899999888766 3333 345666677788888775
No 15
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.18 E-value=3.9e+02 Score=25.46 Aligned_cols=10 Identities=70% Similarity=0.993 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 002590 604 EKIRKLKKEA 613 (903)
Q Consensus 604 ekIr~Lkkea 613 (903)
++|++||+|.
T Consensus 108 ~~~k~lk~E~ 117 (118)
T PF13815_consen 108 EEIKKLKKES 117 (118)
T ss_pred HHHHHHHHhc
Confidence 4577777764
Done!