Query 002591
Match_columns 903
No_of_seqs 1254 out of 3986
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 16:27:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002591.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1309-1313//hhsearch_pdb/002591hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 347.3 42.3 284 615-903 100-408 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 337.7 42.8 286 612-903 179-608 (611)
3 3iz6_a 40S ribosomal protein R 1.0 1 1 333.1 34.0 289 612-903 55-372 (380)
4 1got_B GT-beta; complex (GTP-b 1.0 1 1 329.8 46.0 288 611-903 43-340 (340)
5 1nr0_A Actin interacting prote 1.0 1 1 329.3 42.6 351 540-903 61-564 (611)
6 3ow8_A WD repeat-containing pr 1.0 1 1 324.9 42.4 285 614-903 23-318 (321)
7 2pbi_B Guanine nucleotide-bind 1.0 1 1 322.8 45.6 289 611-903 52-354 (354)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 321.5 46.9 342 541-903 224-577 (577)
9 3dm0_A Maltose-binding peripla 1.0 1 1 316.3 43.0 285 612-903 371-690 (694)
10 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 315.5 41.5 352 541-903 660-1155(1249)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=347.26 Aligned_cols=284 Identities=26% Similarity=0.497 Sum_probs=265.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 64474149998699999489999999958992999978999234784158997689999999998999948993999948
Q 002591 615 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 694 (903)
Q Consensus 615 ~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl 694 (903)
....+.+|.++|+|++|+|++.+|++|+.|++|+|||+.+++...++.+|...|++++|++++.+|++|+.|++|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 30766166776899999699998999938985999989999377888166786878998599999999918981999958
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECCCCEEEEEECCCE
Q ss_conf 99995258842688865899963899909999808992999995899056886358---106999149998999976992
Q 002591 695 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 771 (903)
Q Consensus 695 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~---~~~i~~sp~~~~ll~~s~dg~ 771 (903)
.+ ..++..+.+|...|.+++|+|++. ++++++.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 99-826699828999778999967999-9999968996999989999489999278862899999899999999918990
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEEE
Q ss_conf 999988997089995079988489999289--------------------9999999399-2999987889986137884
Q 002591 772 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 830 (903)
Q Consensus 772 I~i~D~~t~~~~~~l~~h~~~V~si~~spd--------------------g~~lasgs~d-~I~iwdl~s~~~~~~i~~~ 830 (903)
|++||++++.+...+.+|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEE
T ss_conf 99998989743667337874589999858655431012125555566788889999938984999988999---669999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 039995399999179998999987992999988999088-9815789778999936999999995698399909
Q 002591 831 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 831 ~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..|...|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 77888589999949989999995979299998999906899847778689999828999999992799489973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=337.66 Aligned_cols=286 Identities=22% Similarity=0.354 Sum_probs=195.8
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 203644741499986999994899999999589929999789992347841-------5899768999999999899994
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRLATSS 684 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~V~~i~fspdg~~Lasgs 684 (903)
+.+....+.+|.+.|++++|+|++++||+++.|++|+|||+.+++.+..+. +|...|.+++|+|++.+|++++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 97576652002571699999799998999989991999889998286651366432356678789999979999999990
Q ss_pred CCCCEEEEECCCCCCE-------------------------------------------EEEECCCCCCEEEEEECCCCC
Q ss_conf 8993999948999952-------------------------------------------588426888658999638999
Q 002591 685 FDKTVRVWDADNPGYS-------------------------------------------LRTFMGHSASVMSLDFHPNKD 721 (903)
Q Consensus 685 ~Dg~I~IWdl~~~~~~-------------------------------------------~~~~~~h~~~V~si~fsp~~~ 721 (903)
.|++|++||+.+ +.+ ...+.+|...|++++|+|++.
T Consensus 259 ~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 259 ADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCC-CCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCC
T ss_conf 898099996888-7013440478876640689997388799995899689996889974469837888889999918999
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEE------------------------------------------------------
Q ss_conf 09999808992999995899056886------------------------------------------------------
Q 002591 722 DLICSCDGDGEIRYWSINNGSCTRVF------------------------------------------------------ 747 (903)
Q Consensus 722 ~ll~sgs~Dg~I~iwDi~~~~~~~~~------------------------------------------------------ 747 (903)
++++++.|+.|++||+.++.+...+
T Consensus 338 -~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 338 -TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred -EEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCE
T ss_conf -8999958984999978879256321667765078999878996999984896689546885435652120014899707
Q ss_pred -------------------------------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE--EEEECCCCCCEE
Q ss_conf -------------------------------35810699914999899997699299998899708--999507998848
Q 002591 748 -------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPID 794 (903)
Q Consensus 748 -------------------------------~~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~--~~~l~~h~~~V~ 794 (903)
...+.+++|+|++..+++++.|+.|++||+..... +.. .+|...|+
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred EEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEE
T ss_conf 99807996999996763999848943464068895499992899899996899739999945992224101-57788607
Q ss_pred EEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--EECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC--E-
Q ss_conf 99992899999999399-299998788998613788--40399953999991799989999879929999889990--8-
Q 002591 795 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--T- 868 (903)
Q Consensus 795 si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~--~- 868 (903)
+++|+|++++|++++.| .|++|++.+.. .++.. +..|...|.+++|+|++.+|++++.|+.|++|++..+. .
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCC--CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 99998999989999489989998857787--2232102640466425899899899799997997299997887555632
Q ss_pred EEECCC-CCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 898157-89778999936999999995698399909
Q 002591 869 MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 869 ~~~~~h-~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
..+.+| ...|.+++|+|++. |++++.|++|++|+
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred HHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEE
T ss_conf 644467656711899858997-99952887789984
No 3
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=333.11 Aligned_cols=289 Identities=17% Similarity=0.366 Sum_probs=256.3
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 20364474149998699999489999999958992999978999234784158997689999999998999948993999
Q 002591 612 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 691 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~I 691 (903)
.+....++++|.+.|+|++|+|++++|++|+.|++|+|||+.++.....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred EEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 13982000045347789999689998999918980999878888601488559987899999899998999547985899
Q ss_pred EECCCC------CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--------CCCEEEEEE
Q ss_conf 948999------952588426888658999638999099998089929999958990568863--------581069991
Q 002591 692 WDADNP------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRFQ 757 (903)
Q Consensus 692 Wdl~~~------~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~--------~~~~~i~~s 757 (903)
|++... ......+.+|...|.++.|.|++...+++++.|+.|++||++++.++..+. ..+..+.+.
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEE
T ss_conf 98977755567733126406897546899996489978999779981999986779578996056678875676999920
Q ss_pred C-CCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCC
Q ss_conf 4-99989999769929999889-970899950799884899992899999999399-29999878899861378840399
Q 002591 758 P-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 834 (903)
Q Consensus 758 p-~~~~ll~~s~dg~I~i~D~~-t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~ 834 (903)
+ ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++.| .|++||++++ ..+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCC---CEEEEECCCC
T ss_conf 6999989999789869999788897346998874887579999169996999838996999988899---6889861565
Q ss_pred -------CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE----CCCCCCEEEEEEECCCCEEEEEECCCCEEEC
Q ss_conf -------95399999179998999987992999988999088-98----1578977899993699999999569839990
Q 002591 835 -------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 902 (903)
Q Consensus 835 -------~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~----~~h~~~V~sl~~spdg~~LaSgs~DG~I~IW 902 (903)
..+.+++|+|++.++++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.|+.|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 55665568638999889999899997999799998877815789702367777845799989999989996089988999
Q ss_pred C
Q ss_conf 9
Q 002591 903 K 903 (903)
Q Consensus 903 d 903 (903)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=329.83 Aligned_cols=288 Identities=21% Similarity=0.421 Sum_probs=262.0
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 42036447414999869999948999999995899299997899923478415899768999999999899994899399
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 690 (903)
..++...++++|.+.|++++|++++++|++++.|++|+|||+.++..+..+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 01211001048778368999889999999981889689998999874337603886188999999999999980898199
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 99489999---525884268886589996389990999980899299999589905688635---810699914999899
Q 002591 691 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 764 (903)
Q Consensus 691 IWdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll 764 (903)
+|++.+.. .....+.+|...|.++.|++++ .+++++.|+.|++||+++++++..+.+ .+.++.|+|++..++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEECCCCCCCCEEEEEECCCCCCEEEEEECCCC--CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE
T ss_conf 997966888613677844877638999987999--699998999299998999918899769998668999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC--CCCCEEEEE
Q ss_conf 99769929999889970899950799884899992899999999399-299998788998613788403--999539999
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCV 841 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~ 841 (903)
+++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+.. +...+.+++
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC---CEEEEECCCCCCCCEEEEE
T ss_conf 9938993999778998167897487687799999499998999748981999988999---1899972688524169999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9179998999987992999988999088-9815789778999936999999995698399909
Q 002591 842 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 842 ~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|+|++.+|++++.|+.|++||+..++.+ .+.+|...|.+++|+|++.+|++|+.|+.|+||+
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 989999999977999099988413838658505778488999829999899972886189559
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=329.29 Aligned_cols=351 Identities=16% Similarity=0.232 Sum_probs=272.1
Q ss_pred CCCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEE-EECCCCCCC--------CCCCCCCCC
Q ss_conf 9440899808981102---6998144177602655100000268877756786-415999976--------787744101
Q 002591 540 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR--------DAGGRGMDV 607 (903)
Q Consensus 540 ~~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d~~~~~--------~~~~~~~d~ 607 (903)
....+.|+|||.++++ ++.++|||+.+++.... ..+ ..+...|... +.++..... ....+.|+.
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~---~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTI---PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEE---ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE-EEE---CCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 659999999996899994899789948989841566-762---2557844899989999979999899773669999638
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 35742036447414999869999948999-99999589929999789992347841589976899999999989999489
Q 002591 608 SQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 686 (903)
Q Consensus 608 ~~~~~~~~~~~l~~H~~~V~~i~fspdg~-~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D 686 (903)
.+....+.+|.+.|++++|+|++. +|++++.|++|++||..+++...++.+|...|++++|+|++.+|++++.|
T Consensus 137 -----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 137 -----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp -----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -----CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf -----997632547889836999889998299999289809999799975766520025716999997999989999899
Q ss_pred CCEEEEECCCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----------
Q ss_conf 9399994899995258842-------6888658999638999099998089929999958990568863-----------
Q 002591 687 KTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------- 748 (903)
Q Consensus 687 g~I~IWdl~~~~~~~~~~~-------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~----------- 748 (903)
++|++||+.+ +.....+. +|...|.+++|+|++. +|++++.|++|++||+++++++..+.
T Consensus 212 ~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 212 GTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp SCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCEEEEECCC-CCEEEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEE
T ss_conf 9199988999-8286651366432356678789999979999-9999908980999968887013440478876640689
Q ss_pred -----------------------------------CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE-C-----
Q ss_conf -----------------------------------58106999149998999976992999988997089995-0-----
Q 002591 749 -----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-Q----- 787 (903)
Q Consensus 749 -----------------------------------~~~~~i~~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l-~----- 787 (903)
..+.+++|+|++..+++++.|+.|++||+.++.+...+ .
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCE
T ss_conf 99738879999589968999688997446983788888999991899989999589849999788792563216677650
Q ss_pred ----------------------------------------------------------------------------CCCC
Q ss_conf ----------------------------------------------------------------------------7998
Q 002591 788 ----------------------------------------------------------------------------GHTK 791 (903)
Q Consensus 788 ----------------------------------------------------------------------------~h~~ 791 (903)
.|..
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCC
T ss_conf 78999878996999984896689546885435652120014899707998079969999967639998489434640688
Q ss_pred CEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-CCEE
Q ss_conf 84899992899999999399-299998788998613788403999539999917999899998799299998899-9088
Q 002591 792 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTM 869 (903)
Q Consensus 792 ~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~-~~~~ 869 (903)
.+.+++|+|++++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++.+|++++.|+.|++|++.+ +++.
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CCEEEEEECCCCEEEEECCCCEEEEEECCCCC-EEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEE
T ss_conf 95499992899899996899739999945992-224101-5778860799998999989999489989998857787223
Q ss_pred E---ECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9---815789778999936999999995698399909
Q 002591 870 T---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 870 ~---~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
. ...|...|.+++|+|++++|++++.|+.|+||+
T Consensus 528 ~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 528 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 2102640466425899899899799997997299997
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=324.90 Aligned_cols=285 Identities=18% Similarity=0.367 Sum_probs=261.2
Q ss_pred EEEEEEECCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 364474149998699999489----9999999589929999789992--3478415899768999999999899994899
Q 002591 614 KEANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 687 (903)
Q Consensus 614 ~~~~~l~~H~~~V~~i~fspd----g~~Latgs~Dg~I~IWd~~t~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 687 (903)
.....+.+|.+.|++++|+++ +.+|++|+.|++|+||++.... ....+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred HEEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 04552156889679999824888888889998499989998898997436660056778889999889999899993798
Q ss_pred CEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 39999489999525884268886589996389990999980899299999589905688635---810699914999899
Q 002591 688 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 764 (903)
Q Consensus 688 ~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~---~~~~i~~sp~~~~ll 764 (903)
+|++||+.+ +..+..+..+...+.+++|+|++. ++++++.|+.|++|++++++....+.. .+..++|+|++..++
T Consensus 103 ~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 103 HIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp EEEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CEEEEECCC-CCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEE
T ss_conf 099997899-979899937985679999999999-899983899199998679946677438994299999989999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99769929999889970899950799884899992899999999399-29999878899861378840399953999991
Q 002591 765 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 843 (903)
Q Consensus 765 ~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 843 (903)
+++.|+.|++||+++++++..+.+|..+|.+++|+|++.+|++++.| .|++||++.+ .++..+..|...|.+++|+
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEEC
T ss_pred EECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC---CEEEEECCCCCCEEEEEEC
T ss_conf 9928983999999999099998025896018999489998999909980999878996---3258986888826899997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 79998999987992999988999088-9815789778999936999999995698399909
Q 002591 844 PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 844 p~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++.+|++++.|+.|++||+.+++++ .+.+|...|.+++|++++.+|++++.||.|+|||
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9999899981898099994999888889837877389999989999999975898089995
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=322.76 Aligned_cols=289 Identities=19% Similarity=0.352 Sum_probs=258.7
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 42036447414999869999948999999995899299997899923478415899768999999999899994899399
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 690 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 690 (903)
+.++....+++|.+.|+|++|++++.+|++|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 22278799648898088999989999899992898299998999875357742788779999989999799713899889
Q ss_pred EEECCCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECC--C
Q ss_conf 99489999-----5258842688865899963899909999808992999995899056886358---106999149--9
Q 002591 691 VWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPH--L 760 (903)
Q Consensus 691 IWdl~~~~-----~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~~~---~~~i~~sp~--~ 760 (903)
+|++.... .....+.+|...|.++.|++++. .+++++.|++|++||+++++++..+.++ +.++.+.+. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred EEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 999742566553333116306678478999968999-9999918995899767778199999278998699998757999
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEEC--CCCCE
Q ss_conf 989999769929999889970899950799884899992899999999399-299998788998613788403--99953
Q 002591 761 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKF 837 (903)
Q Consensus 761 ~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~--~~~~i 837 (903)
..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.. ..+..+.. +...+
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGA 287 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCCCE
T ss_conf 99999947995999988899277983588788179999589998999969981999988899---678887478740345
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 99999179998999987992999988999088-9815789778999936999999995698399909
Q 002591 838 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 838 ~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.++.|+|++.++++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.|+.|+||+
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 5999947999999997899299998988955779987899578999989999999982888889619
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=321.48 Aligned_cols=342 Identities=27% Similarity=0.457 Sum_probs=281.7
Q ss_pred CCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEE-EECCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 440899808981102---6998144177602655100000268877756786-415999----97678774410135742
Q 002591 541 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS 612 (903)
Q Consensus 541 ~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d~~----~~~~~~~~~~d~~~~~~ 612 (903)
...+.|++++..+++ ++.+++||...... . .+ ..+...+... +.++.. ...+...+.|+. .
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~-~---~~---~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~----~ 292 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-Q---TL---TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----N 292 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEE-E---EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----T
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEE-E---EE---ECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----C
T ss_conf 89999979999999991899899995999799-9---98---068898799999689999999959997999948----9
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 03644741499986999994899999999589929999789992347841589976899999999989999489939999
Q 002591 613 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 692 (903)
Q Consensus 613 ~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IW 692 (903)
.+....+.+|...|++++|+|++.+|++++.|+.|++||... ..+..+.+|...|.+++|+|++.+|++++.|+.|++|
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 958999706889769999999999999996999599996999-7257874788977999998999999999699989999
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECC
Q ss_conf 48999952588426888658999638999099998089929999958990568863---581069991499989999769
Q 002591 693 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE 769 (903)
Q Consensus 693 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~s~d 769 (903)
+.. +..+..+.+|...|.+++|+|++.. +++++.|+.|++||.. ++.+..+. ..+..+.|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC--CCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 089--9789985278897489999899999-9999499989999699-97898962889975799998999999999399
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCE
Q ss_conf 929999889970899950799884899992899999999399-2999987889986137884039995399999179998
Q 002591 770 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 848 (903)
Q Consensus 770 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp~g~~ 848 (903)
+.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++|+.. + .++..+..|...|.+++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-C---CEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98999979-998899972789977899996999999999198979999399-9---789998679999899999189999
Q ss_pred EEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9999879929999889990889815789778999936999999995698399909
Q 002591 849 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 849 lit~s~dg~I~iwdl~~~~~~~~~~h~~~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
|++++.|+.|++||.....+..+.+|.+.|++++|+||+++|++++.|+.|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999896999999699978989718888878999968999999990899999969
No 9
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=316.26 Aligned_cols=285 Identities=23% Similarity=0.411 Sum_probs=243.9
Q ss_pred CEEEEEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 203644741499986999994899-99999958992999978999-----234784158997689999999998999948
Q 002591 612 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 685 (903)
Q Consensus 612 ~~~~~~~l~~H~~~V~~i~fspdg-~~Latgs~Dg~I~IWd~~t~-----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~ 685 (903)
.++....+++|.+.|+|++|++++ ++|++|+.|++|+||++.+. .....+.+|...|.+++|++++.+|++++.
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 46412110467740699986699888899980899489997568875555333242588884799999799999999808
Q ss_pred CCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE------ECCCEEEEEECC
Q ss_conf 99399994899995258842688865899963899909999808992999995899056886------358106999149
Q 002591 686 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPH 759 (903)
Q Consensus 686 Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwDi~~~~~~~~~------~~~~~~i~~sp~ 759 (903)
|++|+|||+.+ +...+.+.+|...|.+++|+|++.. +++++.|+.|++||+......... ...+.+++|+++
T Consensus 451 Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCCEEEEECCC-CCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 99289997999-9513688679998899999089998-999948897999978998540430377888786799999179
Q ss_pred C--CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 9--989999769929999889970899950799884899992899999999399-2999987889986137884039995
Q 002591 760 L--GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 836 (903)
Q Consensus 760 ~--~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 836 (903)
+ ..+++++.|+.|++||+++.++...+.+|...|++++|+|++.+|++++.| .|++||++++ .++..+.. ...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~ 604 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSV 604 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECC-CCC
T ss_conf 88655999968985999989999278998678888889999189898999958994999988999---56788338-994
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-------------------CCCEEEEEEECCCCEEEEEECC
Q ss_conf 399999179998999987992999988999088-98157-------------------8977899993699999999569
Q 002591 837 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHD 896 (903)
Q Consensus 837 i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h-------------------~~~V~sl~~spdg~~LaSgs~D 896 (903)
+.+++|+|++.++++ +.++.|++||+.++..+ .+..+ ...+++++|+|++++|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEE-ECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCC
T ss_conf 789998599868999-7699789998999987332002456532002456645677404775148986899989997589
Q ss_pred CCEEECC
Q ss_conf 8399909
Q 002591 897 KFVKLWK 903 (903)
Q Consensus 897 G~I~IWd 903 (903)
|.|+||+
T Consensus 684 g~i~iW~ 690 (694)
T 3dm0_A 684 GVIRVWG 690 (694)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
T ss_conf 8499985
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=315.51 Aligned_cols=352 Identities=20% Similarity=0.354 Sum_probs=201.6
Q ss_pred CCEEEEEECCCCEEC---CCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEEE-EECC-C-----CCCCCCCCCCCCCCCC
Q ss_conf 440899808981102---6998144177602655100000268877756786-4159-9-----9976787744101357
Q 002591 541 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHD-D-----TDPRDAGGRGMDVSQG 610 (903)
Q Consensus 541 ~~~i~~s~dg~~~~~---~~~~~lWd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~d-~-----~~~~~~~~~~~d~~~~ 610 (903)
...+.|++++.++++ ++.+++||..+++...... .+...+.+. +.++ + ....++..+.|++..+
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEC------CCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCC
T ss_conf 8999992699989998189959998779993689995------8997379999840899659999808970999989996
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----------------------------
Q ss_conf 420364474149998699999489999999958992999978999234784-----------------------------
Q 002591 611 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----------------------------- 661 (903)
Q Consensus 611 ~~~~~~~~l~~H~~~V~~i~fspdg~~Latgs~Dg~I~IWd~~t~~~~~~l----------------------------- 661 (903)
+....+.+|.+.|++++|+|++.+|++++.||.|++||+.++.....+
T Consensus 734 ---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 734 ---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---CHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf ---34220127779788999925999899997898599996888865530202321024677644565017999997899
Q ss_pred --------------------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEE
Q ss_conf --------------------------158997689999999998999948993999948999952588426888658999
Q 002591 662 --------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 715 (903)
Q Consensus 662 --------------------------~~h~~~V~~i~fspdg~~Lasgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~si~ 715 (903)
.+|...|.+++|+|++.++++++.|+.|++|++.+ +..+..+.+|...|.+++
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCEEEECCCCCCCEEEEE
T ss_conf 8899975895999995689723577478777607999827888899994798699998678-956532278766568999
Q ss_pred ECCCCCEEEEEEECCCCEEEEECCCC----------------------------------------EEEEEEECCCEEEE
Q ss_conf 63899909999808992999995899----------------------------------------05688635810699
Q 002591 716 FHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTRVFKGGTAQMR 755 (903)
Q Consensus 716 fsp~~~~ll~sgs~Dg~I~iwDi~~~----------------------------------------~~~~~~~~~~~~i~ 755 (903)
|+|++. ++++++.|+.|++|++... .........+.+++
T Consensus 890 ~spdg~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 890 FSPDGS-SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp ECTTSS-EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred ECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEE
T ss_conf 989999-8999958972898874665201021133103689759986899813776248984476508972567278999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC------------
Q ss_conf 91499989999769929999889970899950799884899992899999999399-29999878899------------
Q 002591 756 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------------ 822 (903)
Q Consensus 756 ~sp~~~~ll~~s~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~lasgs~d-~I~iwdl~s~~------------ 822 (903)
++|++..+++++.++.|++||+.++.....+.+|...|.+++|+|+++++++++.| .|++|++.++.
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred ECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEE
T ss_conf 95899779998699988999757872344303677716899998999989998699879999879996689852787389
Q ss_pred -------------------------CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC
Q ss_conf -------------------------86137884039995399999179998999987992999988999088-9815789
Q 002591 823 -------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG 876 (903)
Q Consensus 823 -------------------------~~~~i~~~~~~~~~i~~i~~sp~g~~lit~s~dg~I~iwdl~~~~~~-~~~~h~~ 876 (903)
....+..+..|...+.+++|+|++.++++++.|+.|++||+.+++.+ .+.+|..
T Consensus 1049 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~ 1128 (1249)
T 3sfz_A 1049 DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128 (1249)
T ss_dssp EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS
T ss_pred EEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 99990899589997889689988898865588746688489999989999899984999489987898500125506877
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 778999936999999995698399909
Q 002591 877 LIAALAVSTETGYVASASHDKFVKLWK 903 (903)
Q Consensus 877 ~V~sl~~spdg~~LaSgs~DG~I~IWd 903 (903)
.|++++|+|++.+|++++.||.|++|+
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 679999979999899982899799998
Done!