Query 002593
Match_columns 903
No_of_seqs 344 out of 1380
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 17:08:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002593.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1309-1313//hhsearch_pdb/002593hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 1.0 1 1 499.2 8.8 314 399-759 5-340 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 1.0 1 1 457.5 6.1 295 411-761 77-421 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 1.0 1 1 422.6 4.3 294 413-759 2-344 (470)
4 4h87_A Kanadaptin; FHA domain 1.0 1 1 136.9 11.6 100 46-174 20-119 (130)
5 3elv_A PRE-mRNA leakage protei 1.0 1 1 128.7 11.4 98 46-176 78-191 (205)
6 3els_A PRE-mRNA leakage protei 1.0 1 1 126.5 10.0 96 47-175 32-143 (158)
7 1qu5_A Protein kinase SPK1; FH 1.0 1 1 122.9 6.8 93 62-178 43-136 (182)
8 2jpe_A Nuclear inhibitor of pr 1.0 1 1 122.0 3.1 91 47-175 35-126 (140)
9 1dmz_A Protein (protein kinase 1.0 1 1 119.7 8.6 95 61-179 18-113 (158)
10 1uht_A Expressed protein; FHA 1.0 1 1 117.4 8.3 89 45-174 11-101 (118)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=1.00 E-value=1 Score=499.23 Aligned_cols=314 Identities=18% Similarity=0.304 Sum_probs=249.4
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHCCCCHHHHHHHCC-CCCCCCEEEE
Q ss_conf 77766688989999986799881557887999986233412588-412779898630126666632059-9999759999
Q 002593 399 MDKSKSLGSSCSPPGKKFYLNRLEFMDLTSLNYDVISLPELLYP-VESISRMFIATFTSDILWFMSYCE-IPSHLPVTIA 476 (903)
Q Consensus 399 ~~~~~~~~~~~~~~gspF~LnrI~~lp~~~~n~dtISL~DLLgP-~~~L~~ailsSF~iDidWLLs~f~-~~r~lpVtIV 476 (903)
.+..++|...|...+.+||||+|++++.++ |.++|+|+|||++ .++|++||+||||+|++|||++|+ ..+++||+||
T Consensus 5 ~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~-n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~v~iv 83 (464)
T 1jy1_A 5 GEGQDIWDMLDKGNPFQFYLTRVSGVKPKY-NSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLV 83 (464)
T ss_dssp TTTCCGGGTSCTTCSSCEEEBCCTTSCGGG-GTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSCEEEE
T ss_pred CCCCCHHHHHCCCCCCEEEEEEECCCCCCC-CCCCEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 445344554123688417987624888655-8895339997388621379988678677098998637610158757999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHCC
Q ss_conf 80576544458777767788999992999589986412366555788542114099998579279999289999774313
Q 002593 477 CHNTERCWSTSADKRTSVPYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDSIRVIVTSANLGAKQWNA 556 (903)
Q Consensus 477 v~~~~g~wk~e~~~rl~~~~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GTHHSKLmIL~y~D~lRVVI~TANLi~~DW~~ 556 (903)
.+...+. ..++..++..++|+++|+|+|| ++|| |||||||||+|+|++|||||||||++.||++
T Consensus 84 ~g~~~~~-----~~~l~~~~~~~~nv~~~~p~mp--~~fG---------thHsKmmiL~y~~glRVVI~TANL~~~DW~~ 147 (464)
T 1jy1_A 84 HGDKREA-----KAHLHAQAKPYENISLCQAKLD--IAFG---------THHTKMMLLLYEEGLRVVIHTSNLIHADWHQ 147 (464)
T ss_dssp ECCCHHH-----HHHHHHHHTTCTTEEEEECCCC--STTC---------CBCCCEEEEEESSCEEEEEECCCBSGGGGTS
T ss_pred ECCCCCC-----CHHHHHHHCCCCCEEEEECCCC--CCCC---------CCCHHHHEEECCCCEEEEEECCCCCHHHHCC
T ss_conf 6798663-----0556776324787389927898--7546---------6232201233479529999689888668455
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 458699642-7788899966634579832236889784799999999981249884379997512534666318999704
Q 002593 557 VTNTVWWQD-FPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHWIVELTKYDFASAAGHLVASV 635 (903)
Q Consensus 557 ~TQ~VW~QD-FP~l~~~~~~~~~~~~~~~e~~~~~~sdFk~dL~~YL~sy~~~~ps~~~li~~L~kyDFS~akv~LVaSV 635 (903)
+||++|+|| ||+++.... ...+++++|+.||++||++|+. +.+..|++.|++||||+++|+||+||
T Consensus 148 ~tQ~vW~sd~lP~~~~~~~-----------~~~~~~~~Fk~dL~~yL~ay~~--~~~~~~i~~L~~~DFS~~~v~LVaSv 214 (464)
T 1jy1_A 148 KTQGIWLSPLYPRIADGTH-----------KSGESPTHFKANLISYLTAYNA--PSLKEWIDVIHKHDLSETNVYLIGST 214 (464)
T ss_dssp SBCEEEECCCBCBCCTTCC-----------CCCCCTTCHHHHHHHHHHTTCC--GGGHHHHHHHHTBCCTTCCSEEEEEC
T ss_pred CCCEEEECCCCCCCCCCCC-----------CCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 3626996156767776655-----------5687777269999999998188--40579999998669730171899947
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC--CCCEEEEEECCCCCCHHHHHH-HHHHHHH-HCCCCHH
Q ss_conf 99556899998778546887688633333443111013213--764048852155441013468-9856544-2035034
Q 002593 636 PGIHSYRNPNLSESTYSKPVDHGAIWSSDGKFLGSVETSVV--GLSHLFRTAADSNGTQIKKLA-AFLGKSF-SAHGMLK 711 (903)
Q Consensus 636 PG~H~g~~~~~~~~~~G~~~l~n~~~~~~~s~LgSv~~s~~--g~s~l~~q~~DSs~asLg~~~-~wL~~~~-~~~~~~E 711 (903)
||+|.+.+.. .||+++ +++.|..+..... ...+++.|+ ||+++||..+ +||...+ .++....
T Consensus 215 PG~h~~~~~~----~~G~~~--------L~~~L~~~~~~~~~~~~~~i~~Q~--SSIGslg~~~~~Wl~~~f~~sl~~~~ 280 (464)
T 1jy1_A 215 PGRFQGSQKD----NWGHFR--------LKKLLKDHASSMPNAESWPVVGQF--SSVGSLGADESKWLCSEFKESMLTLG 280 (464)
T ss_dssp SEEEEGGGGG----GSHHHH--------HHHHHHHHC-----CCSCCEEEEC--SCBCCCCSSTTTTTTTTHHHHHTCCC
T ss_pred CCCCCCCCCH----HHHHHH--------HHHHHHHHCCCCCCCCCCCEEEEE--ECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8577688512----025899--------999999734577766788679995--13443676346778999999763202
Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCC-------CCCEEE--------CCCCCHHHHCCCCCC
Q ss_conf 242149999889997399903998423-------786141--------477612112004888
Q 002593 712 ILLRRNTNVPADANAVSVLVPNPDELS-------DGDCIQ--------LGFMPRDIAKWVSPL 759 (903)
Q Consensus 712 ~v~ksn~n~p~~~~~v~IIFPT~deVr-------sg~SkQ--------L~fL~~~l~kW~s~~ 759 (903)
+.+.......++++|||||.++|| +|+|+. ..||++|||+|.++.
T Consensus 281 ---~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~~ggsi~~~~~~~~~~~~l~~~l~~w~~~~ 340 (464)
T 1jy1_A 281 ---KESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAET 340 (464)
T ss_dssp ------------CCCEEEECCBHHHHHTSSSCGGGGGGSCCCHHHHTTCGGGGGGEECCCCGG
T ss_pred ---CCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ---356664457886389838889987350356776402446133221244688998752676
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=1.00 E-value=1 Score=457.50 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=220.6
Q ss_pred CCCCCEEEEEECCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC-CCCCCEEEEECCCCCCCCC
Q ss_conf 999867998815578879---999862334125884127798986301266666320599-9997599998057654445
Q 002593 411 PPGKKFYLNRLEFMDLTS---LNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEI-PSHLPVTIACHNTERCWST 486 (903)
Q Consensus 411 ~~gspF~LnrI~~lp~~~---~n~dtISL~DLLgP~~~L~~ailsSF~iDidWLLs~f~~-~r~lpVtIVv~~~~g~wk~ 486 (903)
.+++||+|++++.++.+. .|.++|+|+|||++ ++|++||+||||+|++|||++|+. .+ ||+||.+. |+.
T Consensus 77 ~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~-~~l~~a~~~nF~~Di~WLl~~~~~~~~--~v~iv~g~----~~~ 149 (544)
T 1q32_A 77 AKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGT-ETLKRSILFSFQYELDFLLRQFHQNVE--NITIVGQK----GTI 149 (544)
T ss_dssp --CCEEEEECCTTTTCCC-------EECHHHHHCC-TTEEEEEEECSCEEHHHHHTTSCTTCC--EEEEEEET----TCE
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCEEHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCC--CEEEEECC----CCC
T ss_conf 77998699985455765556789982667997588-228999988878759999963764578--38999568----867
Q ss_pred CCCCCCCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-EEEEEECCCCCHHHHCCCCCEEE
Q ss_conf 877776778---89999929995899864123665557885421140999985792-79999289999774313458699
Q 002593 487 SADKRTSVP---YPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQREDS-IRVIVTSANLGAKQWNAVTNTVW 562 (903)
Q Consensus 487 e~~~rl~~~---~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GTHHSKLmIL~y~D~-lRVVI~TANLi~~DW~~~TQ~VW 562 (903)
+++++..+. ...+||+++|+|+|| + || |||||||||+|+|+ +|||||||||++.||+++||++|
T Consensus 150 ~~~~r~~~~~~~~~~~~nv~l~~p~mp--~-fG---------thHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW 217 (544)
T 1q32_A 150 MPIEARAMDATLAVILKKVKLIEITMP--P-FA---------SHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW 217 (544)
T ss_dssp ECCCGGGCCHHHHHHHTTEEEEEECCC--T-TC---------CBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCC--C-CC---------CCCCEEEEEEECCCCEEEEEECCCCCHHHHCCCCCEEE
T ss_conf 751344545876403797389937898--7-78---------77750389996699889999589899678555465299
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH-HHHHCCCCCCCC-CEEEEEECCCCCC
Q ss_conf 64277888999666345798322368897847999999999812498843799-975125346663-1899970499556
Q 002593 563 WQDFPRRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQAHW-IVELTKYDFASA-AGHLVASVPGIHS 640 (903)
Q Consensus 563 ~QDFP~l~~~~~~~~~~~~~~~e~~~~~~sdFk~dL~~YL~sy~~~~ps~~~l-i~~L~kyDFS~a-kv~LVaSVPG~H~ 640 (903)
+|| +++... .+.+++|+.||++||.+|+. |.+..| ++.|++||||.+ +|+||+||||+|.
T Consensus 218 ~sp--~lp~~s--------------~g~~~~Fk~dL~~yL~ay~~--~~l~~~ii~~l~~~DFS~~~~v~lV~SvPG~h~ 279 (544)
T 1q32_A 218 CSP--LLKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKSVEEVNFAPLSELEFVYSTPSKFQ 279 (544)
T ss_dssp ECC--CEEECC--------------CSSCCHHHHHHHHHHHTTCC--HHHHHHTHHHHHTEECGGGTTCEEEEECCCTTS
T ss_pred ECC--CCCCCC--------------CCCCCCHHHHHHHHHHHCCC--CCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 777--665667--------------78888539999999997298--543258899987558634774389994577657
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC--CCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCH-HHHH-C
Q ss_conf 899998778546887688633333443111013--213-7640488521554410134689856544203503-4242-1
Q 002593 641 YRNPNLSESTYSKPVDHGAIWSSDGKFLGSVET--SVV-GLSHLFRTAADSNGTQIKKLAAFLGKSFSAHGML-KILL-R 715 (903)
Q Consensus 641 g~~~~~~~~~~G~~~l~n~~~~~~~s~LgSv~~--s~~-g~s~l~~q~~DSs~asLg~~~~wL~~~~~~~~~~-E~v~-k 715 (903)
+ ||+++ +++.|..+.. ..- ..++++.|+ ||+++|+..++||+.++.++... +-.+ .
T Consensus 280 ~---------~G~~~--------L~~~L~~~~~~~~~~~~~~~iv~Q~--SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~ 340 (544)
T 1q32_A 280 S---------SGLLS--------FYNKLEKLSAGTSASDTAKHYLCQT--SSIGTSLSRARDENLWTHLMIPLFTGIMSP 340 (544)
T ss_dssp C---------CHHHH--------HHHHHHHTC------CCEEEEEEEC--SBBCCCSCSSSCCCHHHHTHHHHHHTSCCC
T ss_pred C---------CCHHH--------HHHHHHHHHCCCCCCCCCCCEEEEE--CCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 7---------42899--------9999997402478877788679985--154455675116999999976441243346
Q ss_pred CCCCCC--C----------------CCCCEEEEECCCCCCC-------CCCEEE----------CCCCCHHHHCCCCCCC
Q ss_conf 499998--8----------------9997399903998423-------786141----------4776121120048888
Q 002593 716 RNTNVP--A----------------DANAVSVLVPNPDELS-------DGDCIQ----------LGFMPRDIAKWVSPLW 760 (903)
Q Consensus 716 sn~n~p--~----------------~~~~v~IIFPT~deVr-------sg~SkQ----------L~fL~~~l~kW~s~~~ 760 (903)
.+.+.+ . ..++++|||||.++|| +|+|+. +.||++++|+|.++..
T Consensus 341 ~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~ 420 (544)
T 1q32_A 341 PAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPA 420 (544)
T ss_dssp C-----------CCCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTT
T ss_pred CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76665555432234521000122235777459817889986230256766337732311256666777665432047776
Q ss_pred C
Q ss_conf 7
Q 002593 761 D 761 (903)
Q Consensus 761 D 761 (903)
|
T Consensus 421 ~ 421 (544)
T 1q32_A 421 M 421 (544)
T ss_dssp T
T ss_pred C
T ss_conf 5
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=1.00 E-value=1 Score=422.59 Aligned_cols=294 Identities=13% Similarity=0.163 Sum_probs=214.9
Q ss_pred CCCEEEEEECCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 986799881557887---99998623341258841277989863012666663205999997599998057654445877
Q 002593 413 GKKFYLNRLEFMDLT---SLNYDVISLPELLYPVESISRMFIATFTSDILWFMSYCEIPSHLPVTIACHNTERCWSTSAD 489 (903)
Q Consensus 413 gspF~LnrI~~lp~~---~~n~dtISL~DLLgP~~~L~~ailsSF~iDidWLLs~f~~~r~lpVtIVv~~~~g~wk~e~~ 489 (903)
+.+|+|+++++|+++ ..|.++|+|+|||++. +|++||+||||+|++|||++|+.. ..|++|++. ++.|+....
T Consensus 2 ~~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~-~L~~avlfnF~~Di~WLl~~~~~~-~~~v~iv~~--~g~~~~~~~ 77 (470)
T 3sq7_A 2 GAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTE-TLKRSILFSFQYELDFLLRQFHQN-VENITIVGQ--KGTIMPIEA 77 (470)
T ss_dssp CCEEEEECCTTTSCCC-------EECHHHHHCCT-TEEEEEEECSCEEHHHHHTTSCTT-CCEEEEEEE--TTSEECCCG
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEHHHHCCCC-HHHHHHHHHHHHCHHHHHHHCCCC-CCCEEEEEE--CCCCCCCCH
T ss_conf 9843897406767655556898805699962871-277877345240598999647624-586699995--896454410
Q ss_pred CCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CEEEEEECCCCCHHHHCCCCCEEEEECCC
Q ss_conf 77677-88999992999589986412366555788542114099998579-27999928999977431345869964277
Q 002593 490 KRTSV-PYPNFPNLVLVFPPFPESVAFGENCKKQGIACHHPKLFVLQRED-SIRVIVTSANLGAKQWNAVTNTVWWQDFP 567 (903)
Q Consensus 490 ~rl~~-~~~~~pNv~lv~PpLPe~IaFG~d~~~~g~GTHHSKLmIL~y~D-~lRVVI~TANLi~~DW~~~TQ~VW~QDFP 567 (903)
.++.. ....+||+++|.|+|| +|| |||||||||+|+| ++|||||||||+++||+..||++| |||
T Consensus 78 ~~~~~~~~~~~~nv~~i~~~mP---~fG---------thHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P 143 (470)
T 3sq7_A 78 RAMDATLAVILKKVKLIEITMP---PFA---------SHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSP 143 (470)
T ss_dssp GGCCHHHHHHHTTEEEEEECCC---TTC---------CBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECC
T ss_pred HHHHHHHHHHCCCCEEEECCCC---CCC---------CCCCEEEEEEECCCCEEEEEECCCCCHHHHCCCCEEEE--ECC
T ss_conf 1335777753698448842788---867---------86531489996699789999269888546166540799--725
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHCCCCCCCCC-EEEEEECCCCCCCCCCC
Q ss_conf 888999666345798322368897847999999999812498843-7999751253466631-89997049955689999
Q 002593 568 RRCAPDYLSLFVQTPVEEINQDSRSDFTAQLASFMASLVIDVPSQ-AHWIVELTKYDFASAA-GHLVASVPGIHSYRNPN 645 (903)
Q Consensus 568 ~l~~~~~~~~~~~~~~~e~~~~~~sdFk~dL~~YL~sy~~~~ps~-~~li~~L~kyDFS~ak-v~LVaSVPG~H~g~~~~ 645 (903)
+++.++ ...+++|+.||++||++|.. +.+ +.|++.|++||||+++ |+||+||||+|.
T Consensus 144 ~l~~~~--------------~~~~s~Fk~dL~~yL~~y~~--~~l~~~~i~~l~~~DFS~~~~v~lV~SvPG~~~----- 202 (470)
T 3sq7_A 144 LLKIGK--------------EGLPVPFKRSLIEYLNSYHL--KDIDELITKSVEEVNFAPLSELEFVYSTPSKFQ----- 202 (470)
T ss_dssp CEEECC--------------CCSCCHHHHHHHHHHHTTCC--HHHHHHTHHHHHTEECGGGTTCEEEEECCCTTS-----
T ss_pred CCCCCC--------------CCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-----
T ss_conf 776888--------------88878528999999998287--155789999997579877872799994687786-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCC---CCCEEEEEECCCCCCH-HHHHH--HHHHHHH-HCCCC-HHH-----
Q ss_conf 8778546887688633333443111013213---7640488521554410-13468--9856544-20350-342-----
Q 002593 646 LSESTYSKPVDHGAIWSSDGKFLGSVETSVV---GLSHLFRTAADSNGTQ-IKKLA--AFLGKSF-SAHGM-LKI----- 712 (903)
Q Consensus 646 ~~~~~~G~~~l~n~~~~~~~s~LgSv~~s~~---g~s~l~~q~~DSs~as-Lg~~~--~wL~~~~-~~~~~-~E~----- 712 (903)
.|||++| .+.|..++.... ...+++.|+ |||++ ||... .|+...+ .++.. .+.
T Consensus 203 ----~~G~~~L--------~~~L~~~~~~~~~~~~~~~iv~Q~--SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~ 268 (470)
T 3sq7_A 203 ----SSGLLSF--------YNKLEKLSAGTSASDTAKHYLCQT--SSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDT 268 (470)
T ss_dssp ----CCHHHHH--------HHHHHHHTTTCCCCSSCEEEEEEC--SBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC----
T ss_pred ----CCHHHHH--------HHHHHHHCCCCCCCCCCCCEEEEE--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ----5028999--------999997256777656788689995--78666779865315789999987633667654443
Q ss_pred HHCCCCCCC----------CCCCCEEEEECCCCCCC-------CCCEE---------ECCCCC---HHHHCCCCCC
Q ss_conf 421499998----------89997399903998423-------78614---------147761---2112004888
Q 002593 713 LLRRNTNVP----------ADANAVSVLVPNPDELS-------DGDCI---------QLGFMP---RDIAKWVSPL 759 (903)
Q Consensus 713 v~ksn~n~p----------~~~~~v~IIFPT~deVr-------sg~Sk---------QL~fL~---~~l~kW~s~~ 759 (903)
..+.....| ....+++|||||++||| +|+|+ |..||+ +|++||.++.
T Consensus 269 ~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTveeVr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~ 344 (470)
T 3sq7_A 269 AGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAM 344 (470)
T ss_dssp -------CCCHHHHHHHHHHTTEEEEEECCBTGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTT
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCEEECCCCCC
T ss_conf 4433223677520011101579870898388899742803466474466244236778898730221176146767
No 4
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=1.00 E-value=1 Score=136.92 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=77.0
Q ss_pred EEEEEEEECCCCCCCEEEEECCCCCEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 33345875389995115982599978985899998889547864544089998157533784178533555542200100
Q 002593 46 ILHLPLVSTATGSPVDSLTLEPDRPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFR 125 (903)
Q Consensus 46 ~~~~~lis~~~g~~~~~~~L~~~~~ytIGR~~~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g~~~~~~~~~~~~~~r 125 (903)
.+++.++.+ |..++++.|.....|+|||++ +|||+++|+.|||+||+|.|+........ ..
T Consensus 20 ~~~L~v~k~--g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~----------------~~ 80 (130)
T 4h87_A 20 PYSLETLKG--GTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGEC----------------DS 80 (130)
T ss_dssp CCEEEEEET--TEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC--------------------
T ss_pred CEEEEEEEC--CEEEEEEEECCCCEEEECCCC-CCCEEECCCCCCHHCEEEEEECCCCCCCE----------------EC
T ss_conf 979999989--945116982898249986884-78999689981502479998236674302----------------11
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEE
Q ss_conf 0245434573101245433455463288898806887143899999999
Q 002593 126 KKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (903)
Q Consensus 126 ~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l 174 (903)
....++++| | +|+|||||||+||.++++++|.+||+|.|
T Consensus 81 ~~~~~~l~D------l----~StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 81 NGPGFYLYD------L----GSTHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp --CCEEEEE------C----SCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCCCCEEEE------C----CCCCCEEECCEECCCCCEEECCCCCEEEE
T ss_conf 378326852------8----99875689999988995169999999998
No 5
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=1.00 E-value=1 Score=128.70 Aligned_cols=98 Identities=22% Similarity=0.321 Sum_probs=77.7
Q ss_pred EEEEEEEECCC--CCCCEEEEECCCCCEEECCCC--------------CCCCEEECCCCCCCCCEEEEECCCCCEEEECC
Q ss_conf 33345875389--995115982599978985899--------------99888954786454408999815753378417
Q 002593 46 ILHLPLVSTAT--GSPVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSERKIYVLD 109 (903)
Q Consensus 46 ~~~~~lis~~~--g~~~~~~~L~~~~~ytIGR~~--------------~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~ 109 (903)
.+.+.++.... ..+++.+.|...+.|+|||++ ..|||+|+|+.|||+||+|.++.....
T Consensus 78 ~~~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~----- 152 (205)
T 3elv_A 78 MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGI----- 152 (205)
T ss_dssp CEEEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTE-----
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCC-----
T ss_conf 268999969976653103799358874353223554544333223567432089699998720189999668981-----
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEE
Q ss_conf 8533555542200100024543457310124543345546328889880688714389999999981
Q 002593 110 GTFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVC 176 (903)
Q Consensus 110 g~~~~~~~~~~~~~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~ 176 (903)
..| +|+| | +|+|||||||+||.++++++|.+||+|.|+.
T Consensus 153 ------------~~~------~l~D------L----gStNGTfVNG~rI~~~~~~~L~~GD~I~fG~ 191 (205)
T 3elv_A 153 ------------LKC------YVMD------L----DSSNGTCLNNVVIPGARYIELRSGDVLTLSE 191 (205)
T ss_dssp ------------EEE------EEEE------C----SCSSCCEETTEECCBTSCEECCTTCEEESSS
T ss_pred ------------EEE------EEEE------C----CCCCCCEECCEECCCCCEEECCCCCEEEECC
T ss_conf ------------269------9996------9----9899886999998899615879999999798
No 6
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=126.47 Aligned_cols=96 Identities=23% Similarity=0.349 Sum_probs=77.2
Q ss_pred EEEEEEECCC--CCCCEEEEECCCCCEEECCCC--------------CCCCEEECCCCCCCCCEEEEECCCCCEEEECCC
Q ss_conf 3345875389--995115982599978985899--------------998889547864544089998157533784178
Q 002593 47 LHLPLVSTAT--GSPVDSLTLEPDRPYSIGRAS--------------INCDFTFDNRLVSRQHCQILFDSSERKIYVLDG 110 (903)
Q Consensus 47 ~~~~lis~~~--g~~~~~~~L~~~~~ytIGR~~--------------~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g 110 (903)
+.+.++.+.. ..+++.+.|..++.|+|||++ ..|||+|+++.|||+||+|.++......
T Consensus 32 ~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~----- 106 (158)
T 3els_A 32 YELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGIL----- 106 (158)
T ss_dssp EEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEE-----
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCEE-----
T ss_conf 699999699667632038995698716763454555433333225662078976999888242899998158813-----
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEE
Q ss_conf 53355554220010002454345731012454334554632888988068871438999999998
Q 002593 111 TFLLPAFSSVVNEFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFV 175 (903)
Q Consensus 111 ~~~~~~~~~~~~~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~ 175 (903)
.| +++| | +|+|||||||+||.+++.++|.+||+|.|+
T Consensus 107 ------------~~------~l~D------l----~StNGT~VNg~ri~~~~~~~L~~GD~I~~G 143 (158)
T 3els_A 107 ------------KC------YVMD------L----DSSNGTCLNNVVIPGARYIELRSGDVLTLS 143 (158)
T ss_dssp ------------EE------EEEE------C----SCSSCCEETTEECCTTCCEECCTTEEEESS
T ss_pred ------------EE------EEEE------C----CCCCCCEECCEECCCCCEEECCCCCEEEEC
T ss_conf ------------79------9996------9----988866799999679965883799999987
No 7
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=122.88 Aligned_cols=93 Identities=24% Similarity=0.416 Sum_probs=68.4
Q ss_pred EEEECCC-CCEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 5982599-978985899998889547864544089998157533784178533555542200100024543457310124
Q 002593 62 SLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDEG 140 (903)
Q Consensus 62 ~~~L~~~-~~ytIGR~~~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g~~~~~~~~~~~~~~r~~~~~~i~D~~~~~~ 140 (903)
.+.|..+ .+++|||++ +||++|+|+.|||+||+|.++.... ....++.|+. -...| +|+|
T Consensus 43 ~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~----g~~~~e~~~~--~~~~~------~l~D------ 103 (182)
T 1qu5_A 43 SLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAV----GKSMYESPAQ--GLDDI------WYCH------ 103 (182)
T ss_dssp CCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCC----CSSCCSSCCC--SCCEE------EECC------
T ss_pred EEEECCCCCEEEECCCC-CCCEEECCCCCCHHHEEEEEECCCC----CCCCCCCCCC--CCCEE------EEEE------
T ss_conf 89976898149977898-8878979988396795999935766----5432234446--65509------9998------
Q ss_pred CCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEECC
Q ss_conf 54334554632888988068871438999999998189
Q 002593 141 FSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRD 178 (903)
Q Consensus 141 L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~g~ 178 (903)
.|+|||||||.||.++..++|.+||+|.|++..
T Consensus 104 -----lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~ 136 (182)
T 1qu5_A 104 -----TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDK 136 (182)
T ss_dssp -----CSSSCCEETTEECCSSEEEECCTTBCCEEEEEG
T ss_pred -----CCCCCEEECCEECCCCCCEECCCCCEEEEEECC
T ss_conf -----995884899999679965684899999998768
No 8
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=121.99 Aligned_cols=91 Identities=29% Similarity=0.503 Sum_probs=73.1
Q ss_pred EEEEEEECCCCCCCEEEEECCCCCEEECCCCCC-CCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 334587538999511598259997898589999-8889547864544089998157533784178533555542200100
Q 002593 47 LHLPLVSTATGSPVDSLTLEPDRPYSIGRASIN-CDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFR 125 (903)
Q Consensus 47 ~~~~lis~~~g~~~~~~~L~~~~~ytIGR~~~~-cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g~~~~~~~~~~~~~~r 125 (903)
+.+.++.+.. ....+.|..+..++|||++ + |||+++|+.|||+||+|.++.. ++ .|
T Consensus 35 ~~L~v~~g~~--~g~~~~l~~~~~~~IGR~~-~~~di~l~d~~VSr~Ha~i~~~~~-------~~------------~~- 91 (140)
T 2jpe_A 35 LHLDVVKGDK--LIEKLIIDEKKYYLFGRNP-DLCDFTIDHQSCSRVHAALVYHKH-------LK------------RV- 91 (140)
T ss_dssp CBEEEESSSS--EEEEECCSSCSBCCBSSCT-TTSSSCCCCSSSCTTSBEEEEBSS-------SC------------CE-
T ss_pred EEEEEECCCC--CCEEEEECCCCEEEECCCC-CCCCEEECCCCCCHHHEEEEEECC-------CC------------CE-
T ss_conf 7999983997--5138996899839966897-668989389896823539999888-------89------------59-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEE
Q ss_conf 02454345731012454334554632888988068871438999999998
Q 002593 126 KKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFV 175 (903)
Q Consensus 126 ~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~ 175 (903)
+|+| | +|+|||||||+||.++..+.|.+||+|.|+
T Consensus 92 -----~l~D------l----~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G 126 (140)
T 2jpe_A 92 -----FLID------L----NSTHGTFLGHIRLEPHKPQQIPIDSTVSFG 126 (140)
T ss_dssp -----EEEC------C----SCSSCEESSSCEECSSSCCEECTTCCBBCS
T ss_pred -----EEEE------C----CCCCCEEECCEECCCCCCEECCCCCEEEEC
T ss_conf -----9998------9----899983899999779953797899999989
No 9
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=1.00 E-value=1 Score=119.75 Aligned_cols=95 Identities=23% Similarity=0.420 Sum_probs=69.2
Q ss_pred EEEEECCC-CCEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 15982599-97898589999888954786454408999815753378417853355554220010002454345731012
Q 002593 61 DSLTLEPD-RPYSIGRASINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVNEFRKKRDKSLEDEEEDE 139 (903)
Q Consensus 61 ~~~~L~~~-~~ytIGR~~~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g~~~~~~~~~~~~~~r~~~~~~i~D~~~~~ 139 (903)
..+.|..+ .+++|||++ +||++++|+.|||+||+|.++.... ...+++.|+. -...| +++|
T Consensus 18 ~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~----g~~~~~~~~~--~~~~~------~l~D----- 79 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAV----GKSMYESPAQ--GLDDI------WYCH----- 79 (158)
T ss_dssp CCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCC----CCCCSSCSCS--SCEEE------EEEE-----
T ss_pred EEEEECCCCCEEEECCCC-CCCEEECCCCCCHHHEEEEEECCCC----CCCCCCCCCC--CCCCE------EEEE-----
T ss_conf 089975898459977899-9888969998186892999956766----5432334546--55409------9998-----
Q ss_pred CCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEEEECCC
Q ss_conf 4543345546328889880688714389999999981897
Q 002593 140 GFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLFVCRDE 179 (903)
Q Consensus 140 ~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l~~g~~ 179 (903)
.|+|||||||+||.++..++|.+||+|.|++...
T Consensus 80 ------lStNGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~ 113 (158)
T 1dmz_A 80 ------TGTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKN 113 (158)
T ss_dssp ------CSTTCCEETTEECCSSEEEECCSSCCEESCCCTT
T ss_pred ------CCCCCEEECCEECCCCCEEECCCCCEEEEEECCC
T ss_conf ------9969808999996899508937999999965489
No 10
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=1.00 E-value=1 Score=117.38 Aligned_cols=89 Identities=26% Similarity=0.426 Sum_probs=73.3
Q ss_pred EEEEEEEEECC-CCCCCEEEEECCCCCEEECCC-CCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 43334587538-999511598259997898589-9998889547864544089998157533784178533555542200
Q 002593 45 QILHLPLVSTA-TGSPVDSLTLEPDRPYSIGRA-SINCDFTFDNRLVSRQHCQILFDSSERKIYVLDGTFLLPAFSSVVN 122 (903)
Q Consensus 45 ~~~~~~lis~~-~g~~~~~~~L~~~~~ytIGR~-~~~cDivi~d~~VSR~Hc~I~fd~~~~kiyi~~g~~~~~~~~~~~~ 122 (903)
..+.+.+++++ .|. .+.|.++..++|||+ + .||++++|+.|||+||+|.++. +
T Consensus 11 p~l~L~v~~g~~~g~---~~~l~~~~~~~iGR~~~-~~di~l~d~~vSr~Ha~i~~~~---------~------------ 65 (118)
T 1uht_A 11 PSLRLVFVKGPREGD---ALDYKPGSTIRVGRIVR-GNEIAIKDAGISTKHLRIESDS---------G------------ 65 (118)
T ss_dssp CEEEEEESSSTTTTC---BCCBCTTCCEEEESSST-TCSEECCSSSSCTTCEEEEECS---------S------------
T ss_pred CEEEEEEEECCCCCC---EEEECCCCEEEECCCCC-CCCEEECCCCCCHHHEEEEEEC---------C------------
T ss_conf 769999982899971---99978999899748887-8889959988963774999989---------9------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCEEECCCCCEEEE
Q ss_conf 1000245434573101245433455463288898806887143899999999
Q 002593 123 EFRKKRDKSLEDEEEDEGFSRVMVSLNGVFVNGIRLKSGIVRELNAGDEVLF 174 (903)
Q Consensus 123 ~~r~~~~~~i~D~~~~~~L~~~~~StNGTfVNG~RI~~~~~~~L~~GD~I~l 174 (903)
.| +++| | +|+|||||||++|.++..+.|.+||+|.|
T Consensus 66 ~~------~l~D------l----~S~nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 66 NW------VIQD------L----GSSNGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SE------EEEC------C----CCSSCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred EE------EEEE------C----CCCCCEEECCEECCCCCEEECCCCCEEEE
T ss_conf 99------9999------9----89887399999978998589589999998
Done!