Query 002594
Match_columns 903
No_of_seqs 1219 out of 4807
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 5.4E-44 1.2E-48 375.5 32.0 327 370-703 173-499 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.8E-42 6.1E-47 362.5 31.4 410 42-661 88-498 (966)
3 KOG0547 Translocase of outer m 100.0 1.3E-38 2.7E-43 328.1 33.7 434 36-654 115-572 (606)
4 TIGR00990 3a0801s09 mitochondr 100.0 4.2E-36 9.1E-41 355.0 56.2 438 36-654 127-577 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-32 6.9E-37 340.8 58.0 310 369-687 589-898 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 9.8E-33 2.1E-37 345.4 53.2 538 41-698 130-673 (899)
7 PRK11447 cellulose synthase su 100.0 2.4E-31 5.2E-36 334.4 55.7 319 368-693 290-704 (1157)
8 PRK11447 cellulose synthase su 100.0 1.8E-30 3.9E-35 326.5 57.1 306 385-697 273-674 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 2.1E-30 4.6E-35 306.5 49.9 262 428-696 307-578 (615)
10 KOG0548 Molecular co-chaperone 100.0 1.7E-31 3.8E-36 280.8 33.5 474 37-644 3-485 (539)
11 PRK15174 Vi polysaccharide exp 100.0 1.1E-28 2.4E-33 290.4 46.9 277 381-658 110-391 (656)
12 PRK09782 bacteriophage N4 rece 100.0 5.3E-27 1.1E-31 281.3 55.6 238 448-696 476-713 (987)
13 PRK09782 bacteriophage N4 rece 100.0 4.2E-27 9.2E-32 282.1 48.8 280 404-694 464-745 (987)
14 KOG2002 TPR-containing nuclear 100.0 5.7E-27 1.2E-31 261.2 45.1 470 52-694 146-646 (1018)
15 PRK15174 Vi polysaccharide exp 100.0 3.2E-27 7E-32 278.1 42.3 317 368-692 63-384 (656)
16 KOG2002 TPR-containing nuclear 100.0 2E-26 4.3E-31 256.9 44.6 461 44-672 278-769 (1018)
17 PRK10049 pgaA outer membrane p 100.0 2.3E-26 4.9E-31 276.8 47.2 409 33-696 14-463 (765)
18 PRK10049 pgaA outer membrane p 99.9 2.7E-24 5.8E-29 258.9 45.1 196 460-655 248-463 (765)
19 KOG0547 Translocase of outer m 99.9 4.3E-25 9.3E-30 228.5 28.9 311 381-697 115-540 (606)
20 KOG1126 DNA-binding cell divis 99.9 2.2E-25 4.7E-30 240.8 27.3 300 387-693 325-624 (638)
21 KOG1126 DNA-binding cell divis 99.9 2.3E-25 5E-30 240.6 25.1 286 369-654 341-626 (638)
22 KOG1173 Anaphase-promoting com 99.9 9.1E-24 2E-28 223.2 36.4 277 378-654 241-524 (611)
23 PRK11788 tetratricopeptide rep 99.9 5.1E-23 1.1E-27 231.2 37.9 309 380-694 34-356 (389)
24 KOG2003 TPR repeat-containing 99.9 7.8E-23 1.7E-27 208.8 32.3 279 378-656 416-697 (840)
25 KOG0624 dsRNA-activated protei 99.9 2.2E-21 4.8E-26 192.4 34.8 319 41-588 43-378 (504)
26 KOG1155 Anaphase-promoting com 99.9 6.3E-21 1.4E-25 196.8 36.4 304 386-696 232-543 (559)
27 KOG1173 Anaphase-promoting com 99.9 1.8E-21 3.8E-26 206.1 32.2 259 370-628 267-532 (611)
28 KOG0624 dsRNA-activated protei 99.9 1.8E-21 3.9E-26 193.0 29.2 315 375-696 32-377 (504)
29 PRK14574 hmsH outer membrane p 99.9 3.4E-19 7.3E-24 210.2 51.3 440 36-654 34-519 (822)
30 KOG0548 Molecular co-chaperone 99.9 5.7E-21 1.2E-25 201.8 32.2 201 488-696 229-462 (539)
31 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.7E-25 211.8 37.1 281 366-647 54-346 (389)
32 KOG2003 TPR repeat-containing 99.9 2.5E-20 5.4E-25 190.7 34.5 263 416-685 420-685 (840)
33 KOG1155 Anaphase-promoting com 99.9 1.3E-20 2.9E-25 194.5 31.7 276 377-652 258-540 (559)
34 KOG0495 HAT repeat protein [RN 99.9 2.6E-18 5.6E-23 183.9 48.3 322 379-701 514-858 (913)
35 KOG1174 Anaphase-promoting com 99.9 4.8E-19 1E-23 180.1 37.6 295 359-654 210-506 (564)
36 KOG2076 RNA polymerase III tra 99.9 3.4E-19 7.3E-24 198.6 39.4 300 379-678 205-544 (895)
37 PF13429 TPR_15: Tetratricopep 99.9 5.9E-22 1.3E-26 211.0 13.2 264 383-648 10-277 (280)
38 PRK12370 invasion protein regu 99.9 4.7E-19 1E-23 205.8 34.5 264 383-649 260-536 (553)
39 KOG2076 RNA polymerase III tra 99.9 1.3E-18 2.8E-23 194.1 35.3 303 381-690 139-513 (895)
40 PRK14574 hmsH outer membrane p 99.9 2.4E-17 5.1E-22 194.6 47.8 226 397-622 267-521 (822)
41 KOG1129 TPR repeat-containing 99.8 1.1E-18 2.3E-23 172.4 28.6 243 385-628 227-472 (478)
42 KOG4162 Predicted calmodulin-b 99.8 1.8E-17 3.8E-22 182.0 38.8 287 368-654 465-789 (799)
43 PRK12370 invasion protein regu 99.8 2.7E-18 5.8E-23 199.6 34.3 229 418-648 261-502 (553)
44 KOG0550 Molecular chaperone (D 99.8 1.4E-18 3E-23 177.4 27.5 291 33-549 46-353 (486)
45 TIGR00540 hemY_coli hemY prote 99.8 1.2E-17 2.5E-22 187.2 37.0 300 381-688 84-398 (409)
46 KOG0495 HAT repeat protein [RN 99.8 2.1E-17 4.6E-22 177.0 36.6 326 366-699 535-890 (913)
47 PF13429 TPR_15: Tetratricopep 99.8 3.1E-20 6.8E-25 197.8 13.6 268 409-687 4-275 (280)
48 KOG1174 Anaphase-promoting com 99.8 9E-18 2E-22 170.9 30.1 302 387-696 204-507 (564)
49 KOG1125 TPR repeat-containing 99.8 7.2E-19 1.6E-23 187.6 21.0 254 385-638 289-561 (579)
50 PRK10747 putative protoheme IX 99.8 7.8E-17 1.7E-21 179.5 37.6 297 381-689 84-390 (398)
51 PRK11189 lipoprotein NlpI; Pro 99.8 8.8E-18 1.9E-22 179.1 28.5 230 395-629 40-281 (296)
52 TIGR00540 hemY_coli hemY prote 99.8 4.8E-17 1E-21 182.2 35.5 282 366-648 103-399 (409)
53 KOG1129 TPR repeat-containing 99.8 3E-18 6.4E-23 169.3 21.4 264 390-654 188-464 (478)
54 PRK11189 lipoprotein NlpI; Pro 99.8 2.1E-17 4.6E-22 176.2 28.6 223 428-654 39-272 (296)
55 PLN03218 maturation of RBCL 1; 99.8 5.6E-15 1.2E-19 179.4 52.7 305 379-693 505-820 (1060)
56 KOG4162 Predicted calmodulin-b 99.8 6.4E-16 1.4E-20 169.9 39.4 292 396-694 459-788 (799)
57 PLN03081 pentatricopeptide (PP 99.8 7.3E-16 1.6E-20 185.5 44.2 294 379-687 257-555 (697)
58 KOG1125 TPR repeat-containing 99.8 1.7E-18 3.8E-23 184.7 18.7 233 419-651 289-530 (579)
59 KOG0550 Molecular chaperone (D 99.8 7.4E-18 1.6E-22 172.2 20.2 271 381-651 49-353 (486)
60 KOG1127 TPR repeat-containing 99.8 1.9E-16 4.1E-21 177.2 32.9 226 462-687 471-698 (1238)
61 COG3063 PilF Tfp pilus assembl 99.8 6.7E-17 1.5E-21 153.8 25.1 204 381-584 35-240 (250)
62 COG3063 PilF Tfp pilus assembl 99.8 8.2E-17 1.8E-21 153.2 25.3 205 450-654 36-242 (250)
63 PRK10747 putative protoheme IX 99.8 5.2E-16 1.1E-20 172.9 36.0 265 381-649 118-391 (398)
64 TIGR02521 type_IV_pilW type IV 99.8 1E-16 2.2E-21 165.8 28.4 200 449-648 31-232 (234)
65 TIGR02521 type_IV_pilW type IV 99.8 1.2E-16 2.7E-21 165.2 28.8 201 380-580 30-232 (234)
66 PLN03218 maturation of RBCL 1; 99.8 8.7E-14 1.9E-18 169.2 55.0 266 379-650 540-818 (1060)
67 PLN02789 farnesyltranstransfer 99.8 1.2E-16 2.6E-21 169.5 26.3 266 413-701 35-314 (320)
68 PLN03077 Protein ECB2; Provisi 99.8 1E-14 2.2E-19 180.0 46.8 299 378-693 421-728 (857)
69 PLN02789 farnesyltranstransfer 99.8 2E-16 4.3E-21 167.8 26.7 220 378-597 34-267 (320)
70 PLN03081 pentatricopeptide (PP 99.8 4.9E-15 1.1E-19 178.3 40.8 265 379-648 288-557 (697)
71 KOG3785 Uncharacterized conser 99.7 1.9E-14 4.1E-19 144.0 36.3 305 382-698 152-498 (557)
72 COG2956 Predicted N-acetylgluc 99.7 5.6E-15 1.2E-19 146.8 29.9 268 384-653 38-316 (389)
73 PLN03077 Protein ECB2; Provisi 99.7 5.3E-14 1.2E-18 173.6 46.0 297 383-697 391-694 (857)
74 KOG1127 TPR repeat-containing 99.7 2.3E-15 4.9E-20 168.7 30.2 294 382-684 563-908 (1238)
75 KOG0553 TPR repeat-containing 99.7 2.6E-17 5.6E-22 163.3 10.9 107 31-137 76-183 (304)
76 KOG1840 Kinesin light chain [C 99.7 1.8E-15 3.9E-20 167.0 26.0 252 371-648 189-479 (508)
77 KOG1156 N-terminal acetyltrans 99.7 2.1E-13 4.6E-18 147.5 40.9 433 42-686 13-508 (700)
78 COG2956 Predicted N-acetylgluc 99.7 1.9E-14 4.1E-19 143.1 30.0 269 419-696 39-318 (389)
79 KOG1840 Kinesin light chain [C 99.7 6.5E-15 1.4E-19 162.6 29.5 202 377-578 237-477 (508)
80 KOG1156 N-terminal acetyltrans 99.7 1.2E-13 2.7E-18 149.3 38.3 282 369-652 97-438 (700)
81 cd05804 StaR_like StaR_like; a 99.7 1.5E-13 3.2E-18 152.3 35.3 312 377-689 2-336 (355)
82 KOG1915 Cell cycle control pro 99.6 1.1E-10 2.3E-15 121.8 48.7 433 47-698 84-544 (677)
83 cd05804 StaR_like StaR_like; a 99.6 8E-13 1.7E-17 146.5 35.8 268 381-649 43-337 (355)
84 KOG2376 Signal recognition par 99.6 1.4E-11 3E-16 132.3 39.9 282 380-662 174-501 (652)
85 KOG2376 Signal recognition par 99.6 2.6E-11 5.7E-16 130.2 40.6 313 384-701 113-499 (652)
86 PF12569 NARP1: NMDA receptor- 99.6 3E-12 6.4E-17 143.7 33.1 305 381-688 4-333 (517)
87 TIGR03302 OM_YfiO outer membra 99.6 4.1E-13 8.8E-18 139.2 22.4 190 376-582 28-234 (235)
88 KOG4234 TPR repeat-containing 99.6 6.1E-14 1.3E-18 129.7 13.9 121 31-151 90-216 (271)
89 TIGR03302 OM_YfiO outer membra 99.6 6E-13 1.3E-17 137.9 23.0 196 412-650 30-234 (235)
90 PRK15359 type III secretion sy 99.5 3.2E-13 6.9E-18 127.1 17.1 123 537-662 13-135 (144)
91 PRK14720 transcript cleavage f 99.5 4E-12 8.6E-17 148.4 28.2 271 372-696 22-313 (906)
92 PRK15359 type III secretion sy 99.5 4.7E-13 1E-17 125.9 15.6 124 402-528 14-137 (144)
93 KOG1130 Predicted G-alpha GTPa 99.5 3.9E-13 8.4E-18 137.3 15.1 265 385-649 21-345 (639)
94 COG3071 HemY Uncharacterized e 99.5 2.3E-10 4.9E-15 118.2 35.0 296 381-687 84-388 (400)
95 KOG1915 Cell cycle control pro 99.5 7E-10 1.5E-14 115.9 37.0 326 365-692 57-398 (677)
96 KOG3785 Uncharacterized conser 99.5 4.9E-10 1.1E-14 112.8 34.5 423 42-652 28-494 (557)
97 PF12569 NARP1: NMDA receptor- 99.5 2E-10 4.4E-15 129.0 35.9 293 382-677 195-515 (517)
98 KOG1130 Predicted G-alpha GTPa 99.5 7.6E-13 1.7E-17 135.1 14.6 267 421-688 23-343 (639)
99 PRK10370 formate-dependent nit 99.5 3.9E-12 8.5E-17 126.3 18.6 125 530-654 52-179 (198)
100 COG5010 TadD Flp pilus assembl 99.4 1.1E-11 2.3E-16 121.5 20.6 175 434-609 52-226 (257)
101 KOG3060 Uncharacterized conser 99.4 3.2E-11 6.9E-16 116.7 23.0 178 451-628 54-234 (289)
102 KOG3060 Uncharacterized conser 99.4 1.2E-10 2.5E-15 112.8 26.6 184 377-560 48-234 (289)
103 COG3071 HemY Uncharacterized e 99.4 7.8E-10 1.7E-14 114.3 33.3 283 362-648 99-390 (400)
104 PRK10370 formate-dependent nit 99.4 1.8E-11 4E-16 121.6 20.7 154 387-551 22-178 (198)
105 COG5010 TadD Flp pilus assembl 99.4 2.5E-11 5.5E-16 119.0 20.9 181 465-646 49-229 (257)
106 PRK14720 transcript cleavage f 99.4 3.2E-11 7E-16 140.9 25.1 239 409-682 25-283 (906)
107 PRK15179 Vi polysaccharide bio 99.4 3.5E-11 7.5E-16 140.2 25.1 154 501-654 70-223 (694)
108 KOG4648 Uncharacterized conser 99.4 3E-12 6.6E-17 127.9 10.7 109 34-142 94-204 (536)
109 PRK15179 Vi polysaccharide bio 99.4 1.2E-10 2.6E-15 135.8 25.6 142 444-585 81-222 (694)
110 KOG4340 Uncharacterized conser 99.3 2.8E-09 6E-14 105.2 30.3 380 45-652 19-447 (459)
111 KOG1128 Uncharacterized conser 99.3 3.7E-11 8.1E-16 132.2 19.3 223 414-651 397-619 (777)
112 PF04733 Coatomer_E: Coatomer 99.3 1.9E-11 4.1E-16 128.4 16.2 258 388-654 8-271 (290)
113 KOG1128 Uncharacterized conser 99.3 3.6E-11 7.8E-16 132.3 18.3 236 377-627 394-631 (777)
114 PRK04841 transcriptional regul 99.3 1.7E-09 3.7E-14 135.5 36.1 311 381-692 409-763 (903)
115 TIGR02552 LcrH_SycD type III s 99.3 4.7E-11 1E-15 111.9 15.5 117 538-654 4-120 (135)
116 PRK04841 transcriptional regul 99.3 1.1E-08 2.5E-13 128.0 41.6 268 386-653 457-765 (903)
117 KOG0543 FKBP-type peptidyl-pro 99.3 3.9E-11 8.5E-16 124.9 14.9 120 31-150 203-338 (397)
118 TIGR02552 LcrH_SycD type III s 99.3 7.8E-11 1.7E-15 110.4 15.8 116 403-518 5-120 (135)
119 KOG0553 TPR repeat-containing 99.3 5.3E-11 1.1E-15 118.8 14.0 120 381-500 81-200 (304)
120 KOG2047 mRNA splicing factor [ 99.2 1.2E-06 2.5E-11 95.7 44.7 317 371-697 339-697 (835)
121 KOG2047 mRNA splicing factor [ 99.2 4.2E-08 9E-13 106.6 33.4 193 496-692 360-582 (835)
122 PRK15363 pathogenicity island 99.2 5.2E-10 1.1E-14 102.8 16.3 112 543-654 26-138 (157)
123 PRK15363 pathogenicity island 99.2 5.4E-10 1.2E-14 102.7 15.6 111 370-480 23-134 (157)
124 KOG4340 Uncharacterized conser 99.2 3E-09 6.4E-14 105.0 21.4 185 392-578 21-205 (459)
125 PLN03088 SGT1, suppressor of 99.2 2.4E-10 5.3E-15 124.7 15.7 112 39-150 5-117 (356)
126 COG4783 Putative Zn-dependent 99.2 6.7E-09 1.5E-13 110.4 25.3 153 412-581 303-455 (484)
127 COG4783 Putative Zn-dependent 99.2 9.6E-09 2.1E-13 109.2 24.8 153 480-649 303-455 (484)
128 PF04733 Coatomer_E: Coatomer 99.1 7.1E-10 1.5E-14 116.5 15.5 235 379-621 33-272 (290)
129 KOG4642 Chaperone-dependent E3 99.1 1E-10 2.3E-15 111.9 7.7 103 35-137 9-112 (284)
130 PRK10866 outer membrane biogen 99.1 3E-08 6.6E-13 101.7 24.6 84 379-462 30-119 (243)
131 PLN03088 SGT1, suppressor of 99.1 2E-09 4.3E-14 117.6 16.8 112 384-495 5-116 (356)
132 PF12895 Apc3: Anaphase-promot 99.0 4.9E-10 1.1E-14 94.9 6.9 80 49-129 2-84 (84)
133 COG0457 NrfG FOG: TPR repeat [ 99.0 1.5E-06 3.2E-11 89.2 34.4 223 429-651 37-268 (291)
134 PF13525 YfiO: Outer membrane 99.0 3.9E-08 8.4E-13 98.6 21.2 172 379-570 3-197 (203)
135 KOG0551 Hsp90 co-chaperone CNS 99.0 2.2E-09 4.9E-14 107.8 11.5 113 20-132 65-182 (390)
136 COG0457 NrfG FOG: TPR repeat [ 99.0 1.6E-06 3.4E-11 89.1 33.2 224 394-617 36-268 (291)
137 PRK10866 outer membrane biogen 99.0 9.9E-08 2.2E-12 97.9 23.0 182 447-645 30-238 (243)
138 KOG4648 Uncharacterized conser 98.9 6E-10 1.3E-14 111.7 4.8 237 384-654 100-336 (536)
139 PF13414 TPR_11: TPR repeat; P 98.9 3.1E-09 6.7E-14 86.2 8.1 67 68-134 2-69 (69)
140 COG4785 NlpI Lipoprotein NlpI, 98.9 7.7E-08 1.7E-12 91.0 18.3 198 379-581 63-267 (297)
141 KOG1941 Acetylcholine receptor 98.9 2.3E-07 4.9E-12 94.4 22.8 271 381-651 6-323 (518)
142 PF13525 YfiO: Outer membrane 98.9 1.3E-07 2.8E-12 94.8 21.3 176 414-606 4-199 (203)
143 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.2E-08 6.9E-13 90.2 14.8 105 381-485 2-112 (119)
144 KOG0376 Serine-threonine phosp 98.9 1.9E-09 4.1E-14 114.6 6.5 116 37-152 5-121 (476)
145 PRK11906 transcriptional regul 98.9 1E-07 2.2E-12 102.4 19.2 160 383-542 257-432 (458)
146 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.7E-08 8.1E-13 89.7 14.0 103 552-654 3-111 (119)
147 PF14938 SNAP: Soluble NSF att 98.9 6.7E-08 1.5E-12 102.5 17.3 169 521-690 79-267 (282)
148 PRK02603 photosystem I assembl 98.9 8.7E-08 1.9E-12 93.6 16.7 121 376-516 30-153 (172)
149 COG4235 Cytochrome c biogenesi 98.9 7.3E-08 1.6E-12 97.6 16.3 119 432-550 139-260 (287)
150 KOG1070 rRNA processing protei 98.9 1.2E-06 2.7E-11 103.1 28.1 218 397-615 1440-1664(1710)
151 PRK10153 DNA-binding transcrip 98.9 8.9E-08 1.9E-12 108.8 18.7 124 533-657 358-491 (517)
152 PRK10153 DNA-binding transcrip 98.8 1.7E-07 3.6E-12 106.6 20.6 136 381-517 339-487 (517)
153 PRK02603 photosystem I assembl 98.8 2E-07 4.4E-12 91.0 18.3 117 414-550 34-153 (172)
154 COG4785 NlpI Lipoprotein NlpI, 98.8 5.4E-07 1.2E-11 85.4 19.7 195 450-649 66-267 (297)
155 PF14938 SNAP: Soluble NSF att 98.8 8.7E-08 1.9E-12 101.6 16.6 172 524-696 42-232 (282)
156 PF13414 TPR_11: TPR repeat; P 98.8 1.3E-08 2.7E-13 82.6 7.8 67 584-650 2-69 (69)
157 COG4235 Cytochrome c biogenesi 98.8 1E-07 2.3E-12 96.5 15.7 122 533-654 138-262 (287)
158 PF09976 TPR_21: Tetratricopep 98.8 2.1E-07 4.6E-12 87.9 17.1 127 383-510 13-145 (145)
159 cd00189 TPR Tetratricopeptide 98.8 4.6E-08 1E-12 84.4 11.6 98 553-650 2-99 (100)
160 PRK11906 transcriptional regul 98.8 2.7E-07 5.8E-12 99.2 19.4 158 419-576 259-432 (458)
161 KOG1941 Acetylcholine receptor 98.8 6.5E-07 1.4E-11 91.1 20.5 236 416-651 7-278 (518)
162 KOG1070 rRNA processing protei 98.8 9.9E-07 2.2E-11 103.9 24.5 219 431-650 1440-1665(1710)
163 cd00189 TPR Tetratricopeptide 98.8 8.3E-08 1.8E-12 82.8 12.0 97 384-480 3-99 (100)
164 PRK15331 chaperone protein Sic 98.8 1.7E-07 3.6E-12 86.8 14.1 119 13-131 13-133 (165)
165 CHL00033 ycf3 photosystem I as 98.8 1.4E-07 3.1E-12 91.8 14.7 77 520-596 38-117 (168)
166 CHL00033 ycf3 photosystem I as 98.8 1.6E-07 3.5E-12 91.4 14.9 100 395-494 13-117 (168)
167 PF09976 TPR_21: Tetratricopep 98.8 3.9E-07 8.5E-12 86.1 17.0 117 529-646 23-145 (145)
168 KOG0545 Aryl-hydrocarbon recep 98.8 1.4E-07 3E-12 91.0 13.6 107 35-141 177-302 (329)
169 PF13432 TPR_16: Tetratricopep 98.7 3.1E-08 6.6E-13 79.2 7.6 65 73-137 1-65 (65)
170 KOG3081 Vesicle coat complex C 98.7 8.2E-06 1.8E-10 80.4 25.6 256 388-654 15-277 (299)
171 KOG2053 Mitochondrial inherita 98.7 1.8E-05 4E-10 90.1 31.8 226 391-618 19-259 (932)
172 PRK15331 chaperone protein Sic 98.7 2.1E-07 4.6E-12 86.1 13.3 113 370-483 26-138 (165)
173 PF12895 Apc3: Anaphase-promot 98.7 3.7E-08 8E-13 83.3 7.7 81 564-645 2-84 (84)
174 KOG0543 FKBP-type peptidyl-pro 98.7 1.9E-07 4E-12 97.9 14.4 147 485-650 210-357 (397)
175 PF13432 TPR_16: Tetratricopep 98.7 6E-08 1.3E-12 77.5 8.1 64 590-653 2-65 (65)
176 COG3898 Uncharacterized membra 98.7 5.8E-05 1.3E-09 78.1 30.7 262 380-648 119-392 (531)
177 PRK10803 tol-pal system protei 98.7 8.9E-07 1.9E-11 91.5 17.1 106 380-485 141-253 (263)
178 KOG4555 TPR repeat-containing 98.7 6.7E-07 1.5E-11 77.6 13.1 110 42-153 49-163 (175)
179 COG4105 ComL DNA uptake lipopr 98.6 1.2E-05 2.7E-10 79.8 23.1 190 378-584 31-237 (254)
180 KOG1308 Hsp70-interacting prot 98.6 2.3E-08 4.9E-13 101.5 3.7 104 30-133 108-212 (377)
181 KOG3617 WD40 and TPR repeat-co 98.6 1.8E-05 3.9E-10 88.5 26.2 281 385-688 804-1173(1416)
182 COG3898 Uncharacterized membra 98.6 0.00015 3.3E-09 75.1 30.9 290 385-688 88-391 (531)
183 KOG3081 Vesicle coat complex C 98.6 1.6E-05 3.6E-10 78.4 22.1 230 422-662 15-250 (299)
184 PRK10803 tol-pal system protei 98.6 2.3E-06 4.9E-11 88.5 16.8 102 484-585 143-251 (263)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.6E-06 3.6E-11 94.1 16.0 120 523-645 175-294 (395)
186 COG4700 Uncharacterized protei 98.5 2.4E-05 5.1E-10 72.8 20.9 153 494-648 67-222 (251)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.3E-06 4.9E-11 93.0 16.2 116 458-576 178-293 (395)
188 PF12688 TPR_5: Tetratrico pep 98.5 2.3E-06 5.1E-11 76.5 12.9 89 521-609 5-99 (120)
189 KOG2471 TPR repeat-containing 98.5 5.5E-05 1.2E-09 80.3 24.5 307 372-686 231-681 (696)
190 PF12688 TPR_5: Tetratrico pep 98.5 4.8E-06 1E-10 74.5 14.2 96 552-647 2-103 (120)
191 COG4105 ComL DNA uptake lipopr 98.4 7.1E-05 1.5E-09 74.5 22.5 189 414-619 33-238 (254)
192 KOG4234 TPR repeat-containing 98.4 4.7E-06 1E-10 78.2 13.4 112 381-492 95-211 (271)
193 PF14559 TPR_19: Tetratricopep 98.4 8.4E-07 1.8E-11 71.5 7.6 66 392-457 2-67 (68)
194 KOG2053 Mitochondrial inherita 98.4 0.00012 2.7E-09 83.6 26.8 226 426-652 20-259 (932)
195 PF13371 TPR_9: Tetratricopept 98.4 1.1E-06 2.4E-11 72.0 7.8 63 76-138 2-64 (73)
196 KOG2796 Uncharacterized conser 98.4 0.00044 9.5E-09 68.1 26.5 226 415-653 69-320 (366)
197 KOG3617 WD40 and TPR repeat-co 98.4 0.00013 2.8E-09 82.0 25.6 206 382-613 758-995 (1416)
198 PF13512 TPR_18: Tetratricopep 98.4 1.2E-05 2.5E-10 73.1 14.4 86 379-464 8-99 (142)
199 COG4700 Uncharacterized protei 98.4 4.5E-05 9.7E-10 71.0 18.3 146 464-611 71-219 (251)
200 PF13512 TPR_18: Tetratricopep 98.4 4.7E-06 1E-10 75.6 11.5 96 42-137 16-133 (142)
201 PF14559 TPR_19: Tetratricopep 98.3 1.8E-06 3.9E-11 69.6 7.7 55 598-652 4-58 (68)
202 COG1729 Uncharacterized protei 98.3 1.3E-05 2.9E-10 80.4 15.3 104 384-487 144-253 (262)
203 KOG2471 TPR repeat-containing 98.3 0.00011 2.5E-09 78.0 22.2 263 383-646 285-682 (696)
204 PF13371 TPR_9: Tetratricopept 98.3 2.8E-06 6E-11 69.6 8.5 65 592-656 2-66 (73)
205 COG1729 Uncharacterized protei 98.3 1.7E-05 3.6E-10 79.7 14.6 101 486-586 144-250 (262)
206 KOG2300 Uncharacterized conser 98.3 0.0023 5E-08 68.5 30.3 324 367-690 29-475 (629)
207 KOG1586 Protein required for f 98.2 8.7E-05 1.9E-09 71.7 17.8 142 554-696 77-231 (288)
208 KOG2796 Uncharacterized conser 98.2 0.00083 1.8E-08 66.2 24.3 238 379-629 67-333 (366)
209 KOG1586 Protein required for f 98.2 0.00033 7.2E-09 67.8 20.5 159 524-683 81-259 (288)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 5.2E-06 1.1E-10 89.4 9.0 64 69-132 75-141 (453)
211 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7E-06 1.5E-10 88.4 9.8 70 546-615 70-142 (453)
212 KOG4555 TPR repeat-containing 98.2 9.2E-05 2E-09 64.6 14.5 99 384-482 46-148 (175)
213 KOG1914 mRNA cleavage and poly 98.1 0.016 3.4E-07 63.3 32.3 140 371-512 10-166 (656)
214 KOG2610 Uncharacterized conser 98.0 0.00052 1.1E-08 69.8 19.2 161 418-578 106-274 (491)
215 PF06552 TOM20_plant: Plant sp 98.0 4E-05 8.7E-10 71.8 10.4 97 601-697 7-117 (186)
216 KOG2610 Uncharacterized conser 98.0 0.00063 1.4E-08 69.2 19.4 157 490-646 110-274 (491)
217 PF13424 TPR_12: Tetratricopep 98.0 6.2E-06 1.4E-10 68.5 4.5 64 585-648 5-75 (78)
218 KOG1585 Protein required for f 98.0 0.0027 5.9E-08 62.1 22.4 69 376-444 26-100 (308)
219 KOG0530 Protein farnesyltransf 98.0 0.0015 3.2E-08 64.6 19.9 234 466-700 60-309 (318)
220 PF06552 TOM20_plant: Plant sp 97.9 6E-05 1.3E-09 70.6 10.0 98 533-654 7-115 (186)
221 KOG1258 mRNA processing protei 97.9 0.065 1.4E-06 59.9 36.8 334 367-701 65-482 (577)
222 PF13424 TPR_12: Tetratricopep 97.9 2.7E-05 5.8E-10 64.7 6.0 74 616-689 2-75 (78)
223 PF04184 ST7: ST7 protein; In 97.9 0.002 4.4E-08 69.7 21.3 191 420-623 173-384 (539)
224 PF04184 ST7: ST7 protein; In 97.8 0.0035 7.6E-08 68.0 22.5 188 389-589 176-384 (539)
225 KOG1585 Protein required for f 97.8 0.0033 7E-08 61.6 19.6 115 528-643 121-251 (308)
226 PF13431 TPR_17: Tetratricopep 97.8 2.6E-05 5.6E-10 52.4 3.6 32 92-123 2-33 (34)
227 PF10300 DUF3808: Protein of u 97.8 0.016 3.5E-07 65.8 28.0 153 529-688 200-375 (468)
228 KOG4642 Chaperone-dependent E3 97.8 8.1E-05 1.8E-09 72.2 7.9 93 386-478 15-107 (284)
229 PF05843 Suf: Suppressor of fo 97.7 0.00094 2E-08 70.6 16.1 136 519-654 3-142 (280)
230 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 70.0 16.1 133 451-583 3-139 (280)
231 KOG0376 Serine-threonine phosp 97.7 6.6E-05 1.4E-09 80.6 6.5 112 383-494 6-117 (476)
232 PF02259 FAT: FAT domain; Int 97.7 0.027 5.8E-07 62.1 27.5 74 619-692 252-341 (352)
233 PF02259 FAT: FAT domain; Int 97.7 0.015 3.1E-07 64.3 25.3 67 585-651 252-341 (352)
234 COG2909 MalT ATP-dependent tra 97.6 0.13 2.8E-06 60.1 31.9 305 378-688 344-687 (894)
235 KOG0545 Aryl-hydrocarbon recep 97.6 0.001 2.2E-08 64.9 13.0 104 381-484 178-299 (329)
236 KOG0530 Protein farnesyltransf 97.6 0.008 1.7E-07 59.6 19.2 204 392-595 54-269 (318)
237 PF13428 TPR_14: Tetratricopep 97.6 0.00011 2.4E-09 53.0 5.0 43 70-112 2-44 (44)
238 KOG3616 Selective LIM binding 97.6 0.17 3.8E-06 57.0 31.3 160 518-697 883-1067(1636)
239 KOG1550 Extracellular protein 97.6 0.027 5.9E-07 65.6 27.2 261 379-651 242-541 (552)
240 PF00515 TPR_1: Tetratricopept 97.6 0.00011 2.3E-09 49.7 4.2 33 70-102 2-34 (34)
241 KOG4507 Uncharacterized conser 97.6 0.0032 7E-08 68.7 16.9 112 371-482 203-316 (886)
242 PF13281 DUF4071: Domain of un 97.6 0.024 5.3E-07 61.0 23.6 101 380-480 140-257 (374)
243 KOG1310 WD40 repeat protein [G 97.5 0.00022 4.8E-09 76.6 8.0 106 29-134 367-476 (758)
244 PF07079 DUF1347: Protein of u 97.5 0.21 4.6E-06 53.8 31.5 95 384-478 48-157 (549)
245 COG3118 Thioredoxin domain-con 97.5 0.0053 1.1E-07 62.4 16.6 154 380-534 133-289 (304)
246 PF13281 DUF4071: Domain of un 97.5 0.011 2.5E-07 63.4 20.0 81 415-495 141-229 (374)
247 PF13428 TPR_14: Tetratricopep 97.5 0.00021 4.5E-09 51.5 4.9 37 589-625 5-41 (44)
248 KOG2300 Uncharacterized conser 97.5 0.24 5.2E-06 53.7 39.2 184 428-614 288-514 (629)
249 KOG1258 mRNA processing protei 97.4 0.4 8.7E-06 53.8 32.6 259 397-655 61-402 (577)
250 PF13431 TPR_17: Tetratricopep 97.4 0.00017 3.6E-09 48.5 2.8 32 608-639 2-33 (34)
251 PF07719 TPR_2: Tetratricopept 97.3 0.00052 1.1E-08 46.2 4.6 33 70-102 2-34 (34)
252 KOG0985 Vesicle coat protein c 97.3 0.066 1.4E-06 62.6 23.5 232 386-644 1053-1337(1666)
253 COG2909 MalT ATP-dependent tra 97.2 0.47 1E-05 55.6 30.4 266 380-645 414-723 (894)
254 PF10345 Cohesin_load: Cohesin 97.2 0.64 1.4E-05 55.2 33.2 286 398-684 38-428 (608)
255 PF08631 SPO22: Meiosis protei 97.2 0.23 4.9E-06 52.5 26.6 38 650-687 236-273 (278)
256 PF00515 TPR_1: Tetratricopept 97.2 0.00061 1.3E-08 45.9 4.7 32 620-651 2-33 (34)
257 KOG3616 Selective LIM binding 97.2 0.24 5.1E-06 56.0 26.3 315 366-689 462-911 (1636)
258 PF07719 TPR_2: Tetratricopept 97.2 0.00086 1.9E-08 45.1 5.1 34 619-652 1-34 (34)
259 KOG1550 Extracellular protein 97.2 0.18 3.9E-06 58.9 27.1 274 396-690 227-539 (552)
260 COG3118 Thioredoxin domain-con 97.2 0.02 4.4E-07 58.3 16.4 149 415-565 134-286 (304)
261 PF08631 SPO22: Meiosis protei 97.2 0.27 5.9E-06 51.9 26.2 122 392-513 4-151 (278)
262 PF10300 DUF3808: Protein of u 97.2 0.13 2.7E-06 58.7 25.0 176 471-649 179-377 (468)
263 PF10345 Cohesin_load: Cohesin 97.1 1.1 2.3E-05 53.3 35.0 263 380-643 58-428 (608)
264 KOG1308 Hsp70-interacting prot 97.0 0.00055 1.2E-08 70.3 4.1 95 386-480 119-213 (377)
265 KOG4507 Uncharacterized conser 97.0 0.027 5.8E-07 61.9 16.7 117 402-518 200-318 (886)
266 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0048 1E-07 63.2 10.2 99 381-479 81-183 (390)
267 COG2976 Uncharacterized protei 97.0 0.0074 1.6E-07 57.5 10.7 90 45-136 98-192 (207)
268 PF03704 BTAD: Bacterial trans 97.0 0.012 2.5E-07 55.6 12.4 85 45-129 15-122 (146)
269 KOG0985 Vesicle coat protein c 96.9 0.088 1.9E-06 61.6 20.3 196 395-610 1089-1337(1666)
270 PF12968 DUF3856: Domain of Un 96.9 0.035 7.5E-07 48.1 13.0 91 42-132 15-129 (144)
271 COG0790 FOG: TPR repeat, SEL1 96.9 0.25 5.3E-06 52.8 23.5 190 426-651 52-269 (292)
272 COG2976 Uncharacterized protei 96.9 0.07 1.5E-06 51.0 16.2 119 535-654 70-194 (207)
273 PF03704 BTAD: Bacterial trans 96.9 0.028 6.1E-07 53.0 14.0 63 586-648 63-125 (146)
274 COG0790 FOG: TPR repeat, SEL1 96.8 0.57 1.2E-05 50.0 25.6 168 389-565 49-236 (292)
275 PF08424 NRDE-2: NRDE-2, neces 96.7 0.13 2.8E-06 55.5 19.5 162 438-615 8-184 (321)
276 KOG3783 Uncharacterized conser 96.6 0.28 6.2E-06 54.2 20.4 250 432-694 250-525 (546)
277 PF13181 TPR_8: Tetratricopept 96.5 0.005 1.1E-07 41.3 4.6 32 620-651 2-33 (34)
278 PF08424 NRDE-2: NRDE-2, neces 96.5 0.19 4.2E-06 54.2 18.6 164 368-547 6-184 (321)
279 PF04910 Tcf25: Transcriptiona 96.4 0.087 1.9E-06 57.5 15.8 172 476-652 33-226 (360)
280 KOG1914 mRNA cleavage and poly 96.4 2.1 4.6E-05 47.5 40.3 71 60-131 10-81 (656)
281 KOG0890 Protein kinase of the 96.4 1.4 2.9E-05 57.4 27.3 272 387-660 1455-1796(2382)
282 PF13181 TPR_8: Tetratricopept 96.4 0.0054 1.2E-07 41.2 3.9 30 72-101 4-33 (34)
283 PF04910 Tcf25: Transcriptiona 96.2 0.28 6.2E-06 53.6 18.4 168 408-583 33-225 (360)
284 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.016 3.5E-07 43.2 6.1 42 71-112 3-44 (53)
285 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.88 1.9E-05 49.1 20.8 239 404-652 291-535 (660)
286 KOG1464 COP9 signalosome, subu 96.2 0.2 4.3E-06 50.0 15.1 49 429-477 41-93 (440)
287 KOG2041 WD40 repeat protein [G 96.2 1.5 3.2E-05 49.8 23.0 141 449-611 796-936 (1189)
288 KOG0546 HSP90 co-chaperone CPR 96.0 0.011 2.4E-07 61.4 5.9 115 29-143 215-349 (372)
289 KOG3783 Uncharacterized conser 96.0 0.3 6.6E-06 54.0 16.9 244 398-652 250-524 (546)
290 KOG2041 WD40 repeat protein [G 95.9 0.49 1.1E-05 53.4 17.9 237 378-645 689-936 (1189)
291 PF13176 TPR_7: Tetratricopept 95.9 0.012 2.5E-07 40.2 3.7 28 105-132 1-28 (36)
292 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.5 3.2E-05 47.4 20.5 243 366-618 287-535 (660)
293 PF13174 TPR_6: Tetratricopept 95.7 0.018 3.9E-07 38.2 4.2 33 620-652 1-33 (33)
294 PF13176 TPR_7: Tetratricopept 95.7 0.015 3.3E-07 39.6 3.6 30 621-650 1-30 (36)
295 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.059 1.3E-06 40.2 6.4 38 620-657 2-39 (53)
296 PRK10941 hypothetical protein; 95.5 0.12 2.6E-06 53.6 11.0 70 72-141 184-253 (269)
297 PF13174 TPR_6: Tetratricopept 95.3 0.032 6.9E-07 36.9 4.3 31 383-413 2-32 (33)
298 KOG1464 COP9 signalosome, subu 95.3 1.8 4E-05 43.4 17.8 51 393-443 39-93 (440)
299 KOG4151 Myosin assembly protei 95.2 0.07 1.5E-06 61.5 9.0 120 27-146 44-170 (748)
300 KOG0890 Protein kinase of the 95.2 6.4 0.00014 51.6 26.4 65 583-649 1668-1732(2382)
301 PRK10941 hypothetical protein; 95.1 0.17 3.7E-06 52.5 10.8 71 587-657 183-253 (269)
302 PF09613 HrpB1_HrpK: Bacterial 95.1 0.35 7.6E-06 45.3 11.7 85 381-465 10-94 (160)
303 KOG3824 Huntingtin interacting 95.0 0.074 1.6E-06 54.0 7.4 73 556-628 121-193 (472)
304 KOG2396 HAT (Half-A-TPR) repea 95.0 7.2 0.00016 43.1 36.8 96 54-149 89-186 (568)
305 PF12968 DUF3856: Domain of Un 95.0 0.68 1.5E-05 40.4 12.0 90 596-688 20-128 (144)
306 KOG3824 Huntingtin interacting 95.0 0.079 1.7E-06 53.8 7.5 74 384-457 119-192 (472)
307 PF15015 NYD-SP12_N: Spermatog 95.0 0.18 4E-06 53.5 10.3 87 44-130 184-289 (569)
308 PF09613 HrpB1_HrpK: Bacterial 94.8 0.48 1E-05 44.4 11.7 85 551-635 10-94 (160)
309 smart00028 TPR Tetratricopepti 94.8 0.051 1.1E-06 35.2 4.1 31 71-101 3-33 (34)
310 COG5159 RPN6 26S proteasome re 94.8 5.4 0.00012 40.7 21.3 264 385-650 7-316 (421)
311 PF14561 TPR_20: Tetratricopep 94.8 0.3 6.5E-06 41.4 9.4 64 401-464 8-73 (90)
312 PF04781 DUF627: Protein of un 94.7 0.32 7E-06 42.2 9.6 103 387-512 2-107 (111)
313 PF04781 DUF627: Protein of un 94.7 0.33 7.1E-06 42.2 9.5 103 421-546 2-107 (111)
314 KOG1463 26S proteasome regulat 94.6 7.1 0.00015 40.9 22.2 267 385-651 8-319 (411)
315 COG3914 Spy Predicted O-linked 94.4 1.4 3E-05 49.5 15.8 130 499-628 47-185 (620)
316 COG3914 Spy Predicted O-linked 94.1 1.9 4.1E-05 48.5 16.1 134 433-566 49-191 (620)
317 PRK15180 Vi polysaccharide bio 94.1 0.52 1.1E-05 51.0 11.3 127 391-517 299-425 (831)
318 PF14561 TPR_20: Tetratricopep 94.0 0.59 1.3E-05 39.6 9.7 64 571-634 8-73 (90)
319 PRK11619 lytic murein transgly 94.0 17 0.00038 43.1 28.5 122 524-646 248-373 (644)
320 COG4976 Predicted methyltransf 94.0 0.075 1.6E-06 51.9 4.6 60 77-136 3-62 (287)
321 smart00028 TPR Tetratricopepti 93.9 0.087 1.9E-06 34.0 3.6 31 621-651 3-33 (34)
322 COG4649 Uncharacterized protei 93.7 6.3 0.00014 37.2 16.5 118 496-613 71-195 (221)
323 PRK15180 Vi polysaccharide bio 93.6 0.38 8.2E-06 52.0 9.4 121 530-650 302-422 (831)
324 KOG1538 Uncharacterized conser 93.6 3.9 8.3E-05 46.3 17.2 87 548-645 744-830 (1081)
325 COG4649 Uncharacterized protei 93.5 6.5 0.00014 37.1 15.9 117 428-545 71-195 (221)
326 KOG1310 WD40 repeat protein [G 93.4 0.25 5.3E-06 54.1 7.8 102 381-482 374-478 (758)
327 KOG1839 Uncharacterized protei 93.0 0.84 1.8E-05 56.0 12.2 133 379-511 930-1085(1236)
328 KOG4814 Uncharacterized conser 93.0 1.1 2.3E-05 50.5 11.9 92 42-133 360-458 (872)
329 TIGR02561 HrpB1_HrpK type III 92.9 1.1 2.4E-05 41.2 10.0 83 553-635 12-94 (153)
330 COG4976 Predicted methyltransf 92.9 0.15 3.3E-06 49.8 4.8 57 562-618 6-62 (287)
331 PF09986 DUF2225: Uncharacteri 92.8 1 2.2E-05 45.2 10.8 67 586-652 119-198 (214)
332 TIGR02561 HrpB1_HrpK type III 92.7 1.5 3.2E-05 40.4 10.6 83 383-465 12-94 (153)
333 PRK13184 pknD serine/threonine 92.7 32 0.0007 42.5 27.4 191 384-577 478-714 (932)
334 KOG1839 Uncharacterized protei 92.5 0.99 2.2E-05 55.4 11.9 98 552-649 1016-1129(1236)
335 PF10602 RPN7: 26S proteasome 92.5 1.9 4.2E-05 41.8 12.0 98 586-684 37-137 (177)
336 KOG3364 Membrane protein invol 92.4 2.1 4.6E-05 38.5 10.8 73 585-657 32-109 (149)
337 PF04190 DUF410: Protein of un 92.3 16 0.00034 38.1 20.3 26 482-507 89-114 (260)
338 PF09986 DUF2225: Uncharacteri 92.1 2.1 4.6E-05 43.0 12.0 66 551-616 118-196 (214)
339 KOG1463 26S proteasome regulat 92.0 18 0.0004 38.0 19.7 273 419-696 8-323 (411)
340 KOG2422 Uncharacterized conser 92.0 11 0.00024 42.5 17.9 153 463-616 252-450 (665)
341 KOG2422 Uncharacterized conser 91.8 15 0.00034 41.4 18.7 49 394-442 251-311 (665)
342 KOG1538 Uncharacterized conser 91.8 5.7 0.00012 45.0 15.5 212 383-611 587-830 (1081)
343 KOG3364 Membrane protein invol 91.7 3.8 8.3E-05 36.9 11.5 73 449-521 32-109 (149)
344 PF10602 RPN7: 26S proteasome 91.7 2.2 4.7E-05 41.5 11.3 94 417-510 38-140 (177)
345 KOG0529 Protein geranylgeranyl 90.9 6.4 0.00014 42.5 14.4 168 389-556 36-234 (421)
346 COG5191 Uncharacterized conser 90.9 0.58 1.3E-05 47.9 6.5 83 574-656 96-179 (435)
347 PF04053 Coatomer_WDAD: Coatom 90.7 15 0.00033 41.4 18.2 129 424-577 270-399 (443)
348 KOG3807 Predicted membrane pro 90.5 24 0.00053 36.8 19.1 51 391-443 194-244 (556)
349 KOG2396 HAT (Half-A-TPR) repea 90.5 33 0.00072 38.2 32.3 84 370-453 94-178 (568)
350 KOG4814 Uncharacterized conser 90.2 2.6 5.6E-05 47.6 11.2 96 417-512 356-457 (872)
351 KOG0529 Protein geranylgeranyl 90.2 8.9 0.00019 41.5 14.7 171 432-624 46-234 (421)
352 PF13374 TPR_10: Tetratricopep 89.8 0.73 1.6E-05 32.1 4.7 31 619-649 2-32 (42)
353 PF10516 SHNi-TPR: SHNi-TPR; 89.7 0.64 1.4E-05 31.9 4.0 28 104-131 2-29 (38)
354 COG5191 Uncharacterized conser 89.6 0.64 1.4E-05 47.6 5.5 79 478-556 102-181 (435)
355 COG5159 RPN6 26S proteasome re 89.4 28 0.00061 35.7 19.4 273 419-696 7-321 (421)
356 COG1747 Uncharacterized N-term 89.3 41 0.00088 37.6 22.6 201 377-582 62-290 (711)
357 PF13374 TPR_10: Tetratricopep 89.2 0.81 1.8E-05 31.9 4.5 30 103-132 2-31 (42)
358 PF12862 Apc5: Anaphase-promot 87.9 2.6 5.6E-05 36.1 7.6 29 105-133 43-71 (94)
359 PF12862 Apc5: Anaphase-promot 87.8 2.2 4.7E-05 36.5 7.0 56 43-98 5-70 (94)
360 PF04053 Coatomer_WDAD: Coatom 87.8 25 0.00053 39.7 17.2 159 457-645 269-428 (443)
361 PF07721 TPR_4: Tetratricopept 87.6 0.81 1.8E-05 28.4 3.1 24 104-127 2-25 (26)
362 KOG2581 26S proteasome regulat 87.4 47 0.001 36.0 18.0 133 384-516 129-280 (493)
363 KOG2581 26S proteasome regulat 87.2 49 0.0011 35.9 17.5 126 425-550 136-280 (493)
364 PF10579 Rapsyn_N: Rapsyn N-te 86.9 3.6 7.7E-05 33.3 7.1 56 41-96 11-70 (80)
365 PRK13184 pknD serine/threonine 86.7 5.9 0.00013 48.6 12.2 132 558-692 482-623 (932)
366 COG4941 Predicted RNA polymera 86.0 50 0.0011 34.9 16.8 183 465-656 212-402 (415)
367 COG2912 Uncharacterized conser 85.7 8.2 0.00018 39.6 10.8 67 557-623 187-253 (269)
368 COG2912 Uncharacterized conser 85.6 3 6.6E-05 42.7 7.7 68 73-140 185-252 (269)
369 PF10579 Rapsyn_N: Rapsyn N-te 85.2 7.8 0.00017 31.5 8.1 62 382-443 7-71 (80)
370 PF11207 DUF2989: Protein of u 84.5 4 8.7E-05 39.9 7.6 72 51-123 121-198 (203)
371 KOG3807 Predicted membrane pro 83.7 61 0.0013 34.0 19.4 147 417-576 186-336 (556)
372 COG3629 DnrI DNA-binding trans 83.6 13 0.00028 38.7 11.4 59 72-130 156-214 (280)
373 PF09670 Cas_Cas02710: CRISPR- 83.2 19 0.00041 39.8 13.4 62 383-444 133-198 (379)
374 PF11207 DUF2989: Protein of u 83.1 11 0.00024 36.9 9.9 71 568-639 123-198 (203)
375 KOG0128 RNA-binding protein SA 82.9 1.1E+02 0.0024 36.4 24.0 263 369-633 101-395 (881)
376 COG4941 Predicted RNA polymera 82.8 69 0.0015 33.9 17.3 189 430-627 211-407 (415)
377 PF10516 SHNi-TPR: SHNi-TPR; 82.8 2.2 4.7E-05 29.4 3.6 30 620-649 2-31 (38)
378 COG3629 DnrI DNA-binding trans 82.5 6.7 0.00015 40.8 8.8 60 383-442 155-214 (280)
379 PF07720 TPR_3: Tetratricopept 82.5 4.3 9.2E-05 27.6 4.9 32 620-651 2-35 (36)
380 PF15015 NYD-SP12_N: Spermatog 82.3 7.3 0.00016 42.0 9.0 50 455-504 234-283 (569)
381 PF07720 TPR_3: Tetratricopept 81.2 5.6 0.00012 27.0 5.1 21 383-403 3-23 (36)
382 PF07721 TPR_4: Tetratricopept 81.1 2 4.4E-05 26.6 2.8 22 621-642 3-24 (26)
383 COG1747 Uncharacterized N-term 79.8 1.1E+02 0.0024 34.4 26.4 98 412-512 63-160 (711)
384 COG3947 Response regulator con 78.8 5.5 0.00012 40.8 6.5 57 73-129 283-339 (361)
385 KOG0686 COP9 signalosome, subu 78.6 12 0.00026 40.3 9.1 85 45-129 159-255 (466)
386 PF14863 Alkyl_sulf_dimr: Alky 77.8 8.4 0.00018 35.6 7.0 61 63-123 64-124 (141)
387 PF11817 Foie-gras_1: Foie gra 77.8 69 0.0015 33.0 14.7 25 385-409 14-38 (247)
388 KOG2063 Vacuolar assembly/sort 76.9 1.6E+02 0.0035 36.1 18.8 58 72-129 310-372 (877)
389 KOG2114 Vacuolar assembly/sort 76.5 34 0.00074 40.5 12.6 206 421-647 340-549 (933)
390 PF00244 14-3-3: 14-3-3 protei 76.2 44 0.00095 34.2 12.5 28 385-412 5-32 (236)
391 PF04190 DUF410: Protein of un 75.7 1.1E+02 0.0023 31.9 19.5 94 381-474 10-115 (260)
392 PF10373 EST1_DNA_bind: Est1 D 74.9 10 0.00022 40.0 7.9 62 502-563 1-62 (278)
393 PF12739 TRAPPC-Trs85: ER-Golg 74.7 1E+02 0.0022 34.7 16.1 29 384-412 211-239 (414)
394 PRK11619 lytic murein transgly 73.8 2E+02 0.0044 34.3 31.7 127 558-693 248-378 (644)
395 PF12739 TRAPPC-Trs85: ER-Golg 73.6 1.1E+02 0.0025 34.3 16.1 30 417-446 210-239 (414)
396 PF11817 Foie-gras_1: Foie gra 73.4 79 0.0017 32.6 13.8 60 586-645 179-244 (247)
397 PF10373 EST1_DNA_bind: Est1 D 73.4 12 0.00026 39.4 8.0 62 536-597 1-62 (278)
398 KOG2114 Vacuolar assembly/sort 73.0 54 0.0012 39.0 13.1 244 388-654 341-596 (933)
399 PF13041 PPR_2: PPR repeat fam 72.6 10 0.00023 27.6 5.2 34 41-74 8-43 (50)
400 PF07079 DUF1347: Protein of u 72.0 1.7E+02 0.0036 32.6 39.7 211 453-667 302-542 (549)
401 KOG1920 IkappaB kinase complex 71.5 2.8E+02 0.006 34.9 19.9 49 589-644 1003-1051(1265)
402 KOG2063 Vacuolar assembly/sort 71.2 2.6E+02 0.0056 34.4 20.2 68 39-107 310-383 (877)
403 COG4455 ImpE Protein of avirul 70.6 36 0.00077 33.7 9.3 61 594-654 10-70 (273)
404 PF00244 14-3-3: 14-3-3 protei 70.2 1.1E+02 0.0025 31.2 13.8 47 602-648 143-198 (236)
405 PF09670 Cas_Cas02710: CRISPR- 70.1 72 0.0016 35.3 13.3 59 487-545 135-197 (379)
406 COG3947 Response regulator con 69.6 46 0.001 34.5 10.3 59 588-646 282-340 (361)
407 KOG0546 HSP90 co-chaperone CPR 69.4 6.3 0.00014 41.7 4.4 120 387-521 228-347 (372)
408 PF10255 Paf67: RNA polymerase 68.0 16 0.00035 40.2 7.5 57 73-130 126-191 (404)
409 KOG4014 Uncharacterized conser 66.9 1.3E+02 0.0027 29.1 15.2 184 449-649 34-234 (248)
410 PF14863 Alkyl_sulf_dimr: Alky 66.9 19 0.00041 33.3 6.6 51 381-431 70-120 (141)
411 COG4455 ImpE Protein of avirul 65.2 1.5E+02 0.0033 29.5 12.8 61 389-449 9-69 (273)
412 TIGR03504 FimV_Cterm FimV C-te 63.8 13 0.00028 26.6 3.7 26 622-647 2-27 (44)
413 PRK12798 chemotaxis protein; R 63.6 2.4E+02 0.0052 31.2 27.8 61 585-645 257-321 (421)
414 KOG4014 Uncharacterized conser 63.3 1.5E+02 0.0032 28.7 15.4 185 379-580 32-233 (248)
415 KOG1920 IkappaB kinase complex 63.2 4E+02 0.0086 33.6 18.7 50 555-611 1003-1052(1265)
416 TIGR02710 CRISPR-associated pr 63.0 1.4E+02 0.0031 32.7 13.3 55 386-440 135-196 (380)
417 COG5536 BET4 Protein prenyltra 62.6 2E+02 0.0043 29.9 15.8 168 390-557 40-233 (328)
418 PF10255 Paf67: RNA polymerase 61.5 53 0.0011 36.3 9.8 59 555-613 126-192 (404)
419 smart00386 HAT HAT (Half-A-TPR 61.2 20 0.00044 22.8 4.4 20 467-486 5-24 (33)
420 smart00386 HAT HAT (Half-A-TPR 60.9 24 0.00052 22.4 4.7 27 396-422 2-28 (33)
421 PF12854 PPR_1: PPR repeat 60.6 21 0.00046 23.7 4.3 26 619-644 7-32 (34)
422 PF12854 PPR_1: PPR repeat 60.6 21 0.00045 23.7 4.2 26 103-128 7-32 (34)
423 smart00299 CLH Clathrin heavy 60.4 1.4E+02 0.003 27.4 15.1 26 599-629 110-135 (140)
424 PF04097 Nic96: Nup93/Nic96; 60.3 3.6E+02 0.0078 32.1 17.6 165 388-578 265-454 (613)
425 TIGR03504 FimV_Cterm FimV C-te 60.0 18 0.00039 25.8 4.0 25 385-409 3-27 (44)
426 KOG0128 RNA-binding protein SA 58.6 4E+02 0.0087 32.1 27.4 218 369-588 135-384 (881)
427 KOG0276 Vesicle coat complex C 58.3 1.5E+02 0.0033 34.1 12.5 133 484-645 615-747 (794)
428 KOG0686 COP9 signalosome, subu 58.2 2.9E+02 0.0062 30.4 16.2 93 520-612 153-256 (466)
429 smart00299 CLH Clathrin heavy 57.9 1.5E+02 0.0033 27.1 15.3 34 462-495 20-53 (140)
430 PRK12798 chemotaxis protein; R 57.6 3E+02 0.0066 30.4 22.7 270 338-611 31-321 (421)
431 COG5536 BET4 Protein prenyltra 55.1 2.6E+02 0.0057 29.0 16.3 179 433-611 50-257 (328)
432 PF09205 DUF1955: Domain of un 54.8 72 0.0016 29.0 7.6 55 594-648 95-149 (161)
433 PF09797 NatB_MDM20: N-acetylt 54.2 67 0.0014 35.4 9.5 109 467-575 201-310 (365)
434 COG5187 RPN7 26S proteasome re 53.8 1.9E+02 0.0042 30.0 11.4 97 518-614 116-221 (412)
435 KOG0687 26S proteasome regulat 52.6 1.7E+02 0.0037 31.0 11.0 99 551-649 104-211 (393)
436 PF04097 Nic96: Nup93/Nic96; 51.0 3.7E+02 0.008 32.0 15.5 26 666-692 511-536 (613)
437 KOG4521 Nuclear pore complex, 50.8 6.2E+02 0.013 32.0 16.7 115 415-533 920-1070(1480)
438 KOG0889 Histone acetyltransfer 49.2 1E+03 0.023 34.2 20.5 114 552-665 2737-2858(3550)
439 PHA02537 M terminase endonucle 48.0 31 0.00068 34.8 5.0 91 47-137 94-212 (230)
440 cd02682 MIT_AAA_Arch MIT: doma 47.7 55 0.0012 26.5 5.4 23 90-112 34-56 (75)
441 KOG4279 Serine/threonine prote 47.3 86 0.0019 36.8 8.7 116 414-531 200-334 (1226)
442 PF13041 PPR_2: PPR repeat fam 47.1 76 0.0016 22.9 5.9 30 68-97 2-31 (50)
443 KOG0276 Vesicle coat complex C 46.6 2.4E+02 0.0052 32.6 11.7 134 381-543 614-747 (794)
444 cd02682 MIT_AAA_Arch MIT: doma 45.3 67 0.0015 26.0 5.5 14 596-609 17-30 (75)
445 PF05053 Menin: Menin; InterP 44.2 30 0.00066 39.1 4.6 81 2-96 259-345 (618)
446 KOG4279 Serine/threonine prote 44.1 3.6E+02 0.0077 32.1 12.8 119 378-498 198-335 (1226)
447 COG3013 Uncharacterized conser 44.0 8.7 0.00019 34.5 0.4 13 878-890 128-140 (168)
448 PF09205 DUF1955: Domain of un 43.0 1.3E+02 0.0028 27.5 7.3 51 563-613 98-148 (161)
449 PF04090 RNA_pol_I_TF: RNA pol 42.9 3.2E+02 0.0069 27.0 10.9 66 381-446 41-107 (199)
450 PF03887 YfbU: YfbU domain; I 42.6 9 0.00019 36.4 0.3 14 878-891 126-139 (166)
451 cd02680 MIT_calpain7_2 MIT: do 42.4 43 0.00092 27.2 4.0 15 429-443 20-34 (75)
452 PRK09687 putative lyase; Provi 41.5 4.5E+02 0.0097 27.7 29.4 221 415-652 37-267 (280)
453 PF11846 DUF3366: Domain of un 41.3 79 0.0017 31.1 6.8 49 602-651 128-176 (193)
454 TIGR02710 CRISPR-associated pr 40.7 5E+02 0.011 28.6 13.0 54 489-542 136-196 (380)
455 TIGR00756 PPR pentatricopeptid 40.7 54 0.0012 20.9 3.9 25 42-66 6-30 (35)
456 COG5187 RPN7 26S proteasome re 40.4 4.5E+02 0.0098 27.5 13.0 139 445-583 69-224 (412)
457 PF01535 PPR: PPR repeat; Int 39.3 44 0.00095 20.9 3.2 20 557-576 6-25 (31)
458 smart00101 14_3_3 14-3-3 homol 39.3 4.4E+02 0.0096 27.0 16.6 48 601-648 144-200 (244)
459 PF02064 MAS20: MAS20 protein 39.0 96 0.0021 27.9 6.1 30 43-72 70-99 (121)
460 PRK05445 hypothetical protein; 38.8 11 0.00023 35.7 0.1 11 879-889 125-135 (164)
461 PF15469 Sec5: Exocyst complex 37.8 3.9E+02 0.0084 25.9 11.0 24 43-66 93-116 (182)
462 KOG0687 26S proteasome regulat 37.3 5.4E+02 0.012 27.5 12.8 98 450-547 105-211 (393)
463 PF14929 TAF1_subA: TAF RNA Po 34.9 7.6E+02 0.017 28.8 14.0 156 431-597 300-467 (547)
464 COG4259 Uncharacterized protei 34.7 2.3E+02 0.0049 24.4 7.1 53 91-143 59-112 (121)
465 KOG2561 Adaptor protein NUB1, 34.5 5.1E+02 0.011 28.8 11.5 25 521-545 271-295 (568)
466 KOG4151 Myosin assembly protei 34.1 86 0.0019 37.2 6.3 98 26-123 83-181 (748)
467 PRK15490 Vi polysaccharide bio 32.6 5.7E+02 0.012 30.0 12.4 55 587-643 44-98 (578)
468 PF04348 LppC: LppC putative l 32.0 15 0.00033 42.6 0.0 101 378-478 21-127 (536)
469 cd02677 MIT_SNX15 MIT: domain 31.7 63 0.0014 26.2 3.5 15 117-131 20-34 (75)
470 PF13226 DUF4034: Domain of un 31.6 4.8E+02 0.01 27.4 10.7 36 533-568 115-150 (277)
471 cd02677 MIT_SNX15 MIT: domain 31.5 67 0.0015 26.1 3.6 13 54-66 5-17 (75)
472 KOG2758 Translation initiation 31.4 6.7E+02 0.014 26.7 18.2 212 386-597 100-334 (432)
473 PF04348 LppC: LppC putative l 31.3 16 0.00035 42.5 0.0 111 402-512 10-127 (536)
474 PF07219 HemY_N: HemY protein 31.3 2E+02 0.0043 25.2 6.9 49 381-429 59-107 (108)
475 PF11846 DUF3366: Domain of un 30.8 1.3E+02 0.0028 29.6 6.4 39 62-100 137-175 (193)
476 PF03745 DUF309: Domain of unk 30.4 2.6E+02 0.0056 21.7 7.4 56 625-681 5-60 (62)
477 cd02679 MIT_spastin MIT: domai 30.2 95 0.0021 25.5 4.3 15 429-443 22-36 (79)
478 cd02681 MIT_calpain7_1 MIT: do 30.1 1.1E+02 0.0025 24.8 4.7 34 32-65 2-35 (76)
479 PHA02537 M terminase endonucle 28.9 67 0.0014 32.5 3.9 35 620-654 170-213 (230)
480 PF10952 DUF2753: Protein of u 28.8 3.3E+02 0.0072 24.5 7.5 26 521-546 5-30 (140)
481 PF13226 DUF4034: Domain of un 28.6 4.8E+02 0.01 27.3 10.2 35 602-636 116-150 (277)
482 PF01239 PPTA: Protein prenylt 28.3 1.5E+02 0.0032 18.9 4.3 29 88-116 2-30 (31)
483 COG3014 Uncharacterized protei 28.1 7.8E+02 0.017 26.5 13.9 102 434-546 40-154 (449)
484 TIGR03362 VI_chp_7 type VI sec 27.7 7.7E+02 0.017 26.3 17.3 160 480-648 97-279 (301)
485 PRK15490 Vi polysaccharide bio 27.2 3.1E+02 0.0067 32.0 9.2 61 377-439 38-98 (578)
486 KOG0292 Vesicle coat complex C 26.7 5.7E+02 0.012 31.2 11.0 45 80-129 654-698 (1202)
487 PF04090 RNA_pol_I_TF: RNA pol 26.6 6.4E+02 0.014 25.0 11.2 32 601-632 158-191 (199)
488 cd02683 MIT_1 MIT: domain cont 26.4 2.8E+02 0.0061 22.6 6.5 16 48-63 18-33 (77)
489 PF13812 PPR_3: Pentatricopept 25.7 1.7E+02 0.0036 18.6 4.3 22 488-509 6-27 (34)
490 PF04212 MIT: MIT (microtubule 25.7 1.1E+02 0.0024 24.1 4.0 19 78-96 14-32 (69)
491 COG3014 Uncharacterized protei 25.5 8.7E+02 0.019 26.2 14.2 36 551-586 213-248 (449)
492 PF07304 SRA1: Steroid recepto 25.5 1.5E+02 0.0033 28.0 5.5 55 3-64 64-118 (157)
493 cd02684 MIT_2 MIT: domain cont 24.1 1.3E+02 0.0028 24.4 4.1 34 396-444 2-35 (75)
494 PF04212 MIT: MIT (microtubule 23.3 1.8E+02 0.004 22.8 4.9 25 384-408 8-32 (69)
495 KOG0567 HEAT repeat-containing 23.2 8.5E+02 0.019 25.3 16.7 241 352-613 20-261 (289)
496 PF10952 DUF2753: Protein of u 23.0 4.1E+02 0.0088 24.0 7.0 56 454-509 6-76 (140)
497 PF10475 DUF2450: Protein of u 22.8 8.2E+02 0.018 25.8 11.1 101 26-129 117-223 (291)
498 PF07219 HemY_N: HemY protein 22.0 2.4E+02 0.0053 24.6 5.8 45 74-118 64-108 (108)
499 TIGR00985 3a0801s04tom mitocho 21.6 4.6E+02 0.01 24.5 7.6 31 43-73 97-128 (148)
500 cd02679 MIT_spastin MIT: domai 21.6 1.5E+02 0.0033 24.3 4.0 25 106-130 11-35 (79)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-44 Score=375.46 Aligned_cols=327 Identities=20% Similarity=0.232 Sum_probs=211.7
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002594 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (903)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (903)
+...+..+|....+...+|..+-..|+..+|..+|.++++..|..+.+|.++|.++...|+...|+..|++|+.++|...
T Consensus 173 ~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 173 FFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 33444455555555556666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
++|+++|.+|...+.+++|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+..|++++++.|+.++++.++|.++-.
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
.|+..+|..+|.+++.+.|+++++.++||.+|.++|.+++|..+|.++++..|..+.++.++|.+|.++|++++|+.+|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhcc
Q 002594 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (903)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~ 689 (903)
.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|...+ ++.++|..+-..|+..+|+..|+.++.+
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-------AhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-------AHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-------HHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 666666666666666666666666666666666666666666554 3333444445556666666666666666
Q ss_pred CCCcHHHHHhhcCC
Q 002594 690 DPLFKEYWCKRLHP 703 (903)
Q Consensus 690 ~p~~~~~w~~r~~~ 703 (903)
+|+|++.+|++++.
T Consensus 486 kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHC 499 (966)
T ss_pred CCCCchhhhHHHHH
Confidence 66666666665543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-42 Score=362.55 Aligned_cols=410 Identities=22% Similarity=0.233 Sum_probs=378.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~ 120 (903)
..+-+|+..++++.+..-..+|+.+ .-...|.|+|+++-..|++++|+..++.+|+++|++++||+.+|.++...|+.+
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCc
Confidence 3455899999999999999999999 555669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCccccc
Q 002594 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (903)
Q Consensus 121 eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (903)
.|...|..+ ++++|.+..+...++....
T Consensus 168 ~a~~~~~~a--------------lqlnP~l~ca~s~lgnLlk-------------------------------------- 195 (966)
T KOG4626|consen 168 LAVQCFFEA--------------LQLNPDLYCARSDLGNLLK-------------------------------------- 195 (966)
T ss_pred ccHHHHHHH--------------HhcCcchhhhhcchhHHHH--------------------------------------
Confidence 999999999 6666666544333311000
Q ss_pred ccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCCc
Q 002594 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (903)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 280 (903)
T Consensus 196 -------------------------------------------------------------------------------- 195 (966)
T KOG4626|consen 196 -------------------------------------------------------------------------------- 195 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhhH
Q 002594 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (903)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 360 (903)
..+++.+
T Consensus 196 ----------------------------------------------------------------------a~Grl~e--- 202 (966)
T KOG4626|consen 196 ----------------------------------------------------------------------AEGRLEE--- 202 (966)
T ss_pred ----------------------------------------------------------------------hhcccch---
Confidence 0111111
Q ss_pred HHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440 (903)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (903)
.+.|+.+.+...|.-+-+|..+|..+..+|+...|+..|+++++++|+.+++|+++|.+|...+.++.|+.+|.+
T Consensus 203 -----a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 203 -----AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred -----hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 123677778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002594 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (903)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 520 (903)
|+.+.|+++.++-++|.+|..+|..+-|+..|++++++.|+.++++.++|..+...|+..+|..+|.+++.+.|+.++++
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 600 (903)
+++|.++..+|.+++|...|.++++..|....++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHH
Q 002594 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (903)
Q Consensus 601 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 661 (903)
...|+.+|.+|+..+|..++++.+||.+|...|+..+|+..|+.++++.||.++++..+..
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999997765544
No 3
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-38 Score=328.07 Aligned_cols=434 Identities=22% Similarity=0.288 Sum_probs=326.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 002594 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (903)
Q Consensus 36 ~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~ 114 (903)
+...+-+||++|+.|+|++||++|+.||+++|+ +..|.|||.||..+|+|++.+++|.+||+++|++++|+++++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 334456789999999999999999999999977 8899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCC
Q 002594 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (903)
Q Consensus 115 ~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (903)
.+|++++|+.+..-. |+.+. +...+.+..++..+++
T Consensus 195 ~lg~~~eal~D~tv~-------------------------------ci~~~-------------F~n~s~~~~~eR~Lkk 230 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL-------------------------------CILEG-------------FQNASIEPMAERVLKK 230 (606)
T ss_pred hhccHHHHHHhhhHH-------------------------------HHhhh-------------cccchhHHHHHHHHHH
Confidence 999999999554332 11110 0000001111111111
Q ss_pred CcccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCccccc
Q 002594 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (903)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (903)
....... ..+......-+|...++..+...|+..+..
T Consensus 231 ~a~~ka~----------------e~~k~nr~p~lPS~~fi~syf~sF~~~~~~--------------------------- 267 (606)
T KOG0547|consen 231 QAMKKAK----------------EKLKENRPPVLPSATFIASYFGSFHADPKP--------------------------- 267 (606)
T ss_pred HHHHHHH----------------HhhcccCCCCCCcHHHHHHHHhhccccccc---------------------------
Confidence 0000000 000011222223323333333222111000
Q ss_pred ccCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhh
Q 002594 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (903)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (903)
. ...+...
T Consensus 268 -------------~---------------------------------------------~~~~~~k-------------- 275 (606)
T KOG0547|consen 268 -------------L---------------------------------------------FDNKSDK-------------- 275 (606)
T ss_pred -------------c---------------------------------------------ccCCCcc--------------
Confidence 0 0000000
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHH
Q 002594 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG---KYASAISIFDQILKED----PMY---------PEAL 418 (903)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~ 418 (903)
.+....-+...+..+ .|..|...+.+..... ..+ +.++
T Consensus 276 --------------------------sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 276 --------------------------SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred --------------------------chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 111111111122222 4555555555443211 112 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 498 (903)
...|..++..|++-.|...|.++|.++|.+...|..+|.+|...++.++....|.++..++|+++++|+.+|.+++-+++
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 88999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (903)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (903)
+++|+..|++++.++|++..++..++.+.++++++++++..|+.+.+..|+.++++...|.++..+++|++|++.|..++
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC------CHHHHHHHHHHHH-HCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 579 YIDKR------FSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 579 ~~~p~------~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
.+.|. ++..+...|.+.. -.+++..|+.++++|++++|....++..+|.+..++|+.++|+++|++++.+...
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99997 5556666655543 3589999999999999999999999999999999999999999999999988655
Q ss_pred cHH
Q 002594 652 SME 654 (903)
Q Consensus 652 ~~~ 654 (903)
..+
T Consensus 570 ~~E 572 (606)
T KOG0547|consen 570 ESE 572 (606)
T ss_pred HHH
Confidence 443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.2e-36 Score=355.01 Aligned_cols=438 Identities=19% Similarity=0.212 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 002594 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (903)
Q Consensus 36 ~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~ 115 (903)
+...+..++.+|..|+|++|+.+|+++|...|++..|.|+|.||.++|++++|+.+|++||+++|++.++++++|.+|..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33445778899999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCC
Q 002594 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (903)
Q Consensus 116 lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (903)
+|++++|+..|..++.+.+........++... ....+.... ...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~a~~~~-----~~~------------------------------ 250 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERL-LKKFAESKA-----KEI------------------------------ 250 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHH-----HHH------------------------------
Confidence 99999999999888655443332222111110 000000000 000
Q ss_pred cccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccc
Q 002594 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (903)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (903)
+.. .+ ...+....+..+...+.
T Consensus 251 ---------------l~~---~~-------~~~~~~~~~~~~~~~~~--------------------------------- 272 (615)
T TIGR00990 251 ---------------LET---KP-------ENLPSVTFVGNYLQSFR--------------------------------- 272 (615)
T ss_pred ---------------Hhc---CC-------CCCCCHHHHHHHHHHcc---------------------------------
Confidence 000 00 00000000000000000
Q ss_pred cCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhh
Q 002594 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (903)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (903)
.....
T Consensus 273 --------------------------------------------------------------~~~~~------------- 277 (615)
T TIGR00990 273 --------------------------------------------------------------PKPRP------------- 277 (615)
T ss_pred --------------------------------------------------------------CCcch-------------
Confidence 00000
Q ss_pred HHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Q 002594 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQR 429 (903)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g 429 (903)
-.+.......+.....++.++... ...++|++|+..|++++.. .|....++..+|.++...|
T Consensus 278 ------------~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 278 ------------AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred ------------hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 000000001111112222333222 3457899999999999986 4778889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 509 (903)
++++|+..|+++++++|.+..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--
Q 002594 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-- 587 (903)
Q Consensus 510 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-- 587 (903)
+.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|.....
T Consensus 426 l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 426 IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred HHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864332
Q ss_pred ----HHHHHHHH-HHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 588 ----YHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 588 ----~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
+...+.++ ...|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 22333333 44799999999999999999999999999999999999999999999999999887554
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-32 Score=340.79 Aligned_cols=310 Identities=18% Similarity=0.138 Sum_probs=295.2
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
.+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 668 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 45556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (903)
..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~ 747 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 77888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 608 (903)
..|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
++++...|+++.++..+|.++...|++++|+.+|+++++.+|.++. +++..+.++...|++++|...+++.+
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA-------IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999775 55566777888899999999998764
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.8e-33 Score=345.36 Aligned_cols=538 Identities=17% Similarity=0.122 Sum_probs=389.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 002594 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (903)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~ 119 (903)
..+..++..|+|++|+..|++++..+ .++..+..+|.+++..|++++|++.++++++.+|.+..+++.+|.++...|++
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 209 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Confidence 45666889999999999999999998 45566889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHH---HHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCc
Q 002594 120 EEALSVWEKGYEHALHQSADLKQFLELEELLT---AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (903)
Q Consensus 120 ~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (903)
++|+..|+++++..|..+.....+..+.-... .+...+ ..
T Consensus 210 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~-----~~-------------------------------- 252 (899)
T TIGR02917 210 ELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA-----DA-------------------------------- 252 (899)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----HH--------------------------------
Confidence 99999999999888877654433322211100 000000 00
Q ss_pred ccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCccccccc-ccCCccccccccCCCCCCCCCcccccCCcccccc
Q 002594 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGL-HINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (903)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (903)
+.... +..... ....+. ... .++.........
T Consensus 253 -------------~~~~~--------------~~~~~~-~~~~~~~~~~-------------------~~~~~~A~~~~~ 285 (899)
T TIGR02917 253 -------------LLKKA--------------PNSPLA-HYLKALVDFQ-------------------KKNYEDARETLQ 285 (899)
T ss_pred -------------HHHhC--------------CCCchH-HHHHHHHHHH-------------------hcCHHHHHHHHH
Confidence 00000 000000 000000 000 000000000000
Q ss_pred cCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccC-CCCCCChhhhhhhhhhhhhh
Q 002594 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS-DNKSSDSTESRSKLSFKWDM 354 (903)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 354 (903)
+ .....+ .........+......++. ..+...+..... .+........+...+...+.
T Consensus 286 ~-----~l~~~~-----~~~~~~~~~~~~~~~~g~~-----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 344 (899)
T TIGR02917 286 D-----ALKSAP-----EYLPALLLAGASEYQLGNL-----------EQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344 (899)
T ss_pred H-----HHHhCC-----CchhHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC
Confidence 0 000000 0000000000000001110 111111111111 11112222223333333333
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (903)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 434 (903)
...+ ...+.......|.++..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|
T Consensus 345 ~~~A--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 345 VDEA--------IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHH--------HHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHH
Confidence 2222 22445566777888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (903)
Q Consensus 435 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 514 (903)
+..+.+++...|+...+...++.++...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|
T Consensus 417 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 417 IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 99999999998888888888888888889999999999888888888888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002594 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (903)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (903)
.+..++..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.+
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999998899888888889999
Q ss_pred HHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhh
Q 002594 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674 (903)
Q Consensus 595 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 674 (903)
+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++. .++..+.++...+
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~ 649 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-------ALLLLADAYAVMK 649 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcC
Confidence 999999999999999999888888899999999999999999999999999998888765 4455666777778
Q ss_pred cHHHHHHHHhhhhccCCCcHHHHH
Q 002594 675 KINSEFCWFDIDGDIDPLFKEYWC 698 (903)
Q Consensus 675 ~~~~A~~~l~~a~~~~p~~~~~w~ 698 (903)
++++|+..|.++...+|+..+.|.
T Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 650 NYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999888888888777763
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-31 Score=334.36 Aligned_cols=319 Identities=16% Similarity=0.067 Sum_probs=276.9
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHH
Q 002594 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEA 433 (903)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~ 433 (903)
..+.+.+...|.++++++.+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++
T Consensus 290 ~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~e 369 (1157)
T PRK11447 290 PELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQ 369 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHH
Confidence 3667777888999999999999999999999999999999999987642 12355788889999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------------------
Q 002594 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG----------------------- 490 (903)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la----------------------- 490 (903)
|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++
T Consensus 370 A~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 370 AERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999999998876655444
Q ss_pred -------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 002594 491 -------------------IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (903)
Q Consensus 491 -------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 551 (903)
.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3445679999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCCCCHHHHHHH
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLR 591 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~p~~~~~~~~l 591 (903)
.+++.++..+...+++++|+..++++ +...|.++..+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 88888877777777777776665542 23467788889999
Q ss_pred HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 002594 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671 (903)
Q Consensus 592 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 671 (903)
|.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..|+++++..|+++.. +...+.++.
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~-------~~~la~~~~ 682 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT-------QRRVALAWA 682 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988763 444566677
Q ss_pred HhhcHHHHHHHHhhhhccCCCc
Q 002594 672 TASKINSEFCWFDIDGDIDPLF 693 (903)
Q Consensus 672 ~~~~~~~A~~~l~~a~~~~p~~ 693 (903)
..+++++|...|+++....|..
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccC
Confidence 7899999999999998876543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-30 Score=326.50 Aligned_cols=306 Identities=19% Similarity=0.180 Sum_probs=273.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-------------- 450 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------- 450 (903)
..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 456899999999999999999999999999999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-----
Q 002594 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL----- 525 (903)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~----- 525 (903)
....+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 123558889999999999999999999999999999999999999999999999999999999998876655444
Q ss_pred -------------------------------------HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Q 002594 526 -------------------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (903)
Q Consensus 526 -------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (903)
++...|++++|+..|+++++.+|+++.+++.+|.+|...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh-------------------------------------
Q 002594 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG------------------------------------- 611 (903)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a------------------------------------- 611 (903)
+|+..+++++...|+++.+++.++..+...+++++|+..++++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998888887777777777777766543
Q ss_pred ---HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhc
Q 002594 612 ---LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (903)
Q Consensus 612 ---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~ 688 (903)
++..|.++..+..+|.++...|++++|+..|+++++.+|++++ +++..+.++...+++++|+..|+++..
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~-------a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD-------ARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2246888889999999999999999999999999999999987 455667777888999999999999999
Q ss_pred cCCCcHHHH
Q 002594 689 IDPLFKEYW 697 (903)
Q Consensus 689 ~~p~~~~~w 697 (903)
.+|.....+
T Consensus 666 ~~p~~~~~~ 674 (1157)
T PRK11447 666 TANDSLNTQ 674 (1157)
T ss_pred cCCCChHHH
Confidence 998877664
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.1e-30 Score=306.49 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=239.8
Q ss_pred cCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 428 QRELEAAISDFTEAIQS---NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (903)
Q Consensus 428 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 504 (903)
.+++++|+..|++++.. .|....++..+|.++..+|++++|+..|++++.++|.....+..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 36899999999999986 477788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002594 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (903)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 584 (903)
.|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++...|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHH------HHHHHHH-HHHcCCHHHHHHHHHHHHhhccCcHHHHH
Q 002594 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~------~~~la~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
+.++..+|.++...|++++|+..|++++.+.|++... +...+.+ +...|++++|...+++++.++|++..
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~--- 543 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI--- 543 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH---
Confidence 9999999999999999999999999999999875332 2233333 34479999999999999999998864
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
++..+|.++...|++++|+.+|+++.++.+...+.
T Consensus 544 ----a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 544 ----AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 45567888888899999999999999998875553
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=280.76 Aligned_cols=474 Identities=18% Similarity=0.149 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 002594 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (903)
Q Consensus 37 ~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~ 115 (903)
...+.+++.+|+.|||+.||.+|+.+|.++ +|+..|.||+.||..+|+|++|++|..++++++|+++++|.++|.+++-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 345678999999999999999999999999 8888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCcccccc-CCCCCCCcchhhhhcCCC
Q 002594 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSE-SGLNANDKMSETSENHNK 194 (903)
Q Consensus 116 lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (903)
+|+|++|+..|.++ ++.+|.+..++.++ .++. ..... ........+.+....++.
T Consensus 83 lg~~~eA~~ay~~G--------------L~~d~~n~~L~~gl-----~~a~-----~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 83 LGDYEEAILAYSEG--------------LEKDPSNKQLKTGL-----AQAY-----LEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred cccHHHHHHHHHHH--------------hhcCCchHHHHHhH-----HHhh-----hHHHHhhhhccCcHHHHHhhcChh
Confidence 99999999999999 55555555555555 2211 00000 111122333344444444
Q ss_pred CcccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCccccc
Q 002594 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (903)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (903)
......+ +.++.+......++..+..+..+.+......++. +.... .+.
T Consensus 139 t~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~--------------------------~~~- 187 (539)
T KOG0548|consen 139 TNYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDEL--------------------------LFY- 187 (539)
T ss_pred hhhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccc--------------------------ccc-
Confidence 4444444 5566666666666666666665444333322222 11000 000
Q ss_pred ccCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhh
Q 002594 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (903)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (903)
...+..... ..... .+...+...+.+.
T Consensus 188 -----~~~~~~~~~-------------------------------------~~~p~-----~~~~~~~~~~~d~------ 214 (539)
T KOG0548|consen 188 -----ASGIEILAS-------------------------------------MAEPC-----KQEHNGFPIIEDN------ 214 (539)
T ss_pred -----ccccccCCC-------------------------------------CCCcc-----cccCCCCCccchh------
Confidence 000000000 00000 0000000000000
Q ss_pred hHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (903)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 434 (903)
..+.. .-......-.+|...+...++..|+..|..+++++ .+...+.+.+.+|+..|.+.++
T Consensus 215 ----~ee~~-------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c 276 (539)
T KOG0548|consen 215 ----TEERR-------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAEC 276 (539)
T ss_pred ----HHHHH-------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHh
Confidence 00000 00113445678999999999999999999999999 8889999999999999999999
Q ss_pred HHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 435 ISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (903)
Q Consensus 435 ~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 507 (903)
+.....+++...... .+...+|..|...++++.|+.+|.+++...-. ..+.-.....++++....
T Consensus 277 ~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 277 IELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAE 348 (539)
T ss_pred hcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHH
Confidence 999999887655432 33445667788888999999999998765543 555666777888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002594 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (903)
Q Consensus 508 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 587 (903)
...-.+|.-...-...|..++..|+|..|+.+|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+
T Consensus 349 ~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 88888888877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 588 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|+..+.......+.+++
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999999999999999999999999999999888888888876444555555555
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=1.1e-28 Score=290.41 Aligned_cols=277 Identities=14% Similarity=0.042 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..++ .+.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~ 188 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL 188 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence 4556777889999999999999999999999999999999999999999999999999999999999988887664 478
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----
Q 002594 461 ALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---- 535 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---- 535 (903)
..|++++|+..+++++...|. .......++.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 899999999999999988763 344556678889999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHH
Q 002594 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (903)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 658 (903)
|+++..+..+|.++...|++++|+..|+++++.+|++....+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 9988888888999999999999999999999999997654433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.3e-27 Score=281.31 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=213.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002594 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (903)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 527 (903)
++.++..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..+++++...|.+ ..+..+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence 66778888888887 788899999999999999654 46667788889999999999999987775554 5578889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 002594 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (903)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 607 (903)
...|++++|+.+++++++..|.....+..++......|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999888888777777889999999999999999997 89999999999999999999999
Q ss_pred HHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++. +++.+|.++...|++++|+..|++++
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA-------LIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 56677778888899999999999999
Q ss_pred ccCCCcHHH
Q 002594 688 DIDPLFKEY 696 (903)
Q Consensus 688 ~~~p~~~~~ 696 (903)
+++|+....
T Consensus 705 ~l~P~~a~i 713 (987)
T PRK09782 705 DDIDNQALI 713 (987)
T ss_pred hcCCCCchh
Confidence 999987644
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=4.2e-27 Score=282.14 Aligned_cols=280 Identities=11% Similarity=-0.035 Sum_probs=253.3
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002594 404 FDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481 (903)
Q Consensus 404 ~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 481 (903)
+.+++...|. ++.+++.+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 3344444566 88999999999987 899999999999999999865 4666788888999999999999998877665
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 002594 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561 (903)
Q Consensus 482 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 561 (903)
...+..+|.++...|++++|+.+++++++.+|.+...+..++......|++++|+..|+++++.+|+ ..++.++|.++
T Consensus 542 -~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 542 -NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred -cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4567889999999999999999999999999999888888887788889999999999999999997 99999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (903)
Q Consensus 562 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 641 (903)
.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcH
Q 002594 642 YDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (903)
Q Consensus 642 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~ 694 (903)
|+++++++|++.. +.+..|.......++..|.+.+.+...++|.-.
T Consensus 700 l~~Al~l~P~~a~-------i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 700 ARLVIDDIDNQAL-------ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhcCCCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999875 555677777888899999999999888887643
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.7e-27 Score=261.18 Aligned_cols=470 Identities=18% Similarity=0.157 Sum_probs=365.5
Q ss_pred HHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 52 y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~-~~a~~~lG~~~~~lg~~~eA~~~~~~a 129 (903)
++.|...|...+..+ +|+..+..+|.+.+..|+|..|+..|.+||-++|.. ++..+.+|+|++++|+.+.|+..|+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 689999999999999 778889999999999999999999999999999986 568899999999999999999999999
Q ss_pred HhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCcccccccccchhhh
Q 002594 130 YEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSE 209 (903)
Q Consensus 130 l~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (903)
++|+|.+..+..++++.-...-+.
T Consensus 226 --------------lqLdp~~v~alv~L~~~~l~~~d~------------------------------------------ 249 (1018)
T KOG2002|consen 226 --------------LQLDPTCVSALVALGEVDLNFNDS------------------------------------------ 249 (1018)
T ss_pred --------------HhcChhhHHHHHHHHHHHHHccch------------------------------------------
Confidence 566665555555551111111000
Q ss_pred hhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCCcccCCCCCCC
Q 002594 210 TCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPID 289 (903)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 289 (903)
..+..|+.
T Consensus 250 -------------------------~s~~~~~~----------------------------------------------- 257 (1018)
T KOG2002|consen 250 -------------------------DSYKKGVQ----------------------------------------------- 257 (1018)
T ss_pred -------------------------HHHHHHHH-----------------------------------------------
Confidence 00000000
Q ss_pred ccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhhHHHHhhHHHH
Q 002594 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC 369 (903)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (903)
.....+...+..+.....++..++--+....... +.
T Consensus 258 -------------------------------------ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~-------la 293 (1018)
T KOG2002|consen 258 -------------------------------------LLQRAYKENNENPVALNHLANHFYFKKDYERVWH-------LA 293 (1018)
T ss_pred -------------------------------------HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH-------HH
Confidence 0000000011111111222222111111111111 00
Q ss_pred HHHh--hccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 370 VTRI--SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (903)
Q Consensus 370 ~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (903)
...+ ....+.-.+.+|.+|..+..+|+|++|..+|.++++.+|++ .-.++++|..+...|+++.|+.+|++++...|
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 0011 12334557889999999999999999999999999999998 78899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH
Q 002594 447 SAGEAWKRRGQARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENK 517 (903)
Q Consensus 447 ~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 517 (903)
++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..++.++....-+.. +..|..|+.. .+-.+
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCH
Confidence 99999999999998886 67899999999999999999999999999877655555 8888888753 34457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 002594 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (903)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 587 (903)
+.++++|..++..|.+.+|...|..++.. +++. ....+++|.++...++++.|.+.|..++..+|...++
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 89999999999999999999999999877 1221 3358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 002594 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE 667 (903)
Q Consensus 588 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 667 (903)
+..+|......++..+|...+..++..+..++.++..+|.++....++..|.+-|+.+++.-....++|...++..+...
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 99999888889999999999999999999999999999999999999999999998888776666666666665544433
Q ss_pred HHH-------HHhhcHHHHHHHHhhhhccCCCcH
Q 002594 668 IAL-------YTASKINSEFCWFDIDGDIDPLFK 694 (903)
Q Consensus 668 ~~~-------~~~~~~~~A~~~l~~a~~~~p~~~ 694 (903)
..+ -..+++++|+..|.+++..+|.+.
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 322 345678999999999999888765
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=3.2e-27 Score=278.10 Aligned_cols=317 Identities=13% Similarity=0.067 Sum_probs=294.3
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002594 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (903)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (903)
-.+..++...|.+++.++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~ 142 (656)
T PRK15174 63 TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG 142 (656)
T ss_pred HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 35677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 002594 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLA 526 (903)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 526 (903)
+..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++..+|. .......++.+
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999988887764 488999999999999999998764 34455667889
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 002594 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK----ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (903)
+...|++++|+..+++++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|+++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred HHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 682 (903)
+|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|++.. .++..+.++...|++++|+..
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~-------~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK-------WNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH-------HHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764 233446677788999999999
Q ss_pred HhhhhccCCC
Q 002594 683 FDIDGDIDPL 692 (903)
Q Consensus 683 l~~a~~~~p~ 692 (903)
|.+++..+|.
T Consensus 375 l~~al~~~P~ 384 (656)
T PRK15174 375 FEHYIQARAS 384 (656)
T ss_pred HHHHHHhChh
Confidence 9998888776
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-26 Score=256.90 Aligned_cols=461 Identities=14% Similarity=0.081 Sum_probs=373.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc-CChh---HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCC
Q 002594 44 AKLCSLRNWSKAIRILDSLLAQS-YEIQ---DICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGR 118 (903)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~---~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~-~~a~~~lG~~~~~lg~ 118 (903)
+.||-.|||..+..++..+|... ..+. .+|.+|.+|..+|+|++|.+.|.++++.+|++ .-+++.+|+.|...|+
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d 357 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD 357 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch
Confidence 55899999999999999999887 3333 39999999999999999999999999999998 7799999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCccc
Q 002594 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (903)
Q Consensus 119 ~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (903)
+++|...|++.++..|+....++.+..+........... ..
T Consensus 358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~-----d~---------------------------------- 398 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR-----DK---------------------------------- 398 (1018)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH-----HH----------------------------------
Confidence 999999999999988888888777766654432110000 00
Q ss_pred ccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCC
Q 002594 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (903)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 278 (903)
...+..+.
T Consensus 399 --------a~~~l~K~---------------------------------------------------------------- 406 (1018)
T KOG2002|consen 399 --------ASNVLGKV---------------------------------------------------------------- 406 (1018)
T ss_pred --------HHHHHHHH----------------------------------------------------------------
Confidence 00000000
Q ss_pred CcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHh
Q 002594 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (903)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (903)
..........+..++.++...+....
T Consensus 407 -----------------------------------------------------~~~~~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 407 -----------------------------------------------------LEQTPVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred -----------------------------------------------------HhcccccHHHHHHHHHHHHhcChHHH-
Confidence 00000122233444444443333332
Q ss_pred hHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-----CHHHHHHHHHHHHHc
Q 002594 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPM-----YPEALIGRGTARAFQ 428 (903)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~ 428 (903)
.+ .+......+.. ...+..++.+...|..++..|++.+|...|..++.. +++ +....+++|.++...
T Consensus 433 L~-~~~~A~d~L~~--~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 433 LD-AYGNALDILES--KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HH-HHHHHHHHHHH--cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 11 11111112222 233477999999999999999999999999999976 222 234589999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (903)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 508 (903)
++++.|.+.|..++...|...+++..+|.+....+...+|...+..++..+..++.++..+|.+++...++..|.+-|+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999999999999999997777
Q ss_pred HHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 002594 509 CVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (903)
Q Consensus 509 al~~~p--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (903)
.++... .++.+...||.+++. .+.+++|++.|.++++.+|.+..+-..+|.++...|++.+|+.+|
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence 766532 456777888887764 356889999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 575 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
.++.+-..+++.+|.++|.||..+|+|..|++.|+.++... .++.+++..||.++...|.+.+|.+.+.+|+.+.|.+
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 99998877888999999999999999999999999999863 3568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002594 653 MEKFVLQCLAFYQKEIALYT 672 (903)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~ 672 (903)
+...++.+.+..+.+....+
T Consensus 750 ~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred chHHhHHHHHHHHHHHHHHh
Confidence 99888888888777665543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=2.3e-26 Score=276.84 Aligned_cols=409 Identities=13% Similarity=0.012 Sum_probs=253.2
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 002594 33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (903)
Q Consensus 33 ~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~ 111 (903)
.+.-+...+++ +.-.|++++|+..|.+++..+ .....+.++|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 14 ~~~~~~d~~~i--a~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQI--ALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 33334444333 346899999999999998866 444468999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhc
Q 002594 112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN 191 (903)
Q Consensus 112 ~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (903)
++...|++++|+..++++++..|.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-------------------------------------------------------- 115 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-------------------------------------------------------- 115 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--------------------------------------------------------
Confidence 999999999999999998433222
Q ss_pred CCCCcccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcc
Q 002594 192 HNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271 (903)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (903)
T Consensus 116 -------------------------------------------------------------------------------- 115 (765)
T PRK10049 116 -------------------------------------------------------------------------------- 115 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhh
Q 002594 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK 351 (903)
Q Consensus 272 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (903)
T Consensus 116 -------------------------------------------------------------------------------- 115 (765)
T PRK10049 116 -------------------------------------------------------------------------------- 115 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 352 WDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (903)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (903)
++. ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...+..
T Consensus 116 ----------------------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 116 ----------------------------KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred ----------------------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 233 445566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGE-----AWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSAD-------ILHERGI 491 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~ 491 (903)
++|+..++++.. .|+... ....+..+.. ..+++ ++|+..++++++..|.++. +......
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 666666665544 333200 1111111111 11223 5566666666654332221 1111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCC
Q 002594 492 VNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLAN 566 (903)
Q Consensus 492 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~ 566 (903)
.+...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++..+|.+ ......++.++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 23455666666666666666543221 233334666666666666666666666655544 2345555555666666
Q ss_pred HHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHH
Q 002594 567 SEKALECLQQVLYIDKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (903)
Q Consensus 567 ~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (903)
+++|+..++++....|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 66666666666655441 123455566666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 632 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
.|++++|+..+++++.++|++.. .++..+..+...+++++|...++..+...|+.+..
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~-------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNIN-------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 66666666666666666666654 33334444455566666666666666666665544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2.7e-24 Score=258.92 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=147.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Q 002594 460 AALGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYK 534 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~ 534 (903)
...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|+++++.+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 344555666666666555543211 122234555666666666666666655555443 234444555556666666
Q ss_pred HHHHHHHHHHHhCc-------------cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002594 535 KAEEAHLKAIQLDR-------------NF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (903)
Q Consensus 535 ~A~~~~~~al~~~p-------------~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (903)
+|+..++++....| ++ ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666666655544 32 4577889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHH
Q 002594 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (903)
Q Consensus 600 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 655 (903)
++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++..
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999863
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-25 Score=228.53 Aligned_cols=311 Identities=25% Similarity=0.255 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
+..+-.+|.-++..|+|++||.+|+++|+..|+.+..|.+++-||...|++++.++...++++++|+...++++++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHH------------------HHHHh--------------CC----------------------------
Q 002594 461 ALGESVEAIQDLS------------------KALEF--------------EP---------------------------- 480 (903)
Q Consensus 461 ~~g~~~~A~~~~~------------------~al~~--------------~p---------------------------- 480 (903)
.+|++++|+.... +.+.. .|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999988875442 11110 00
Q ss_pred ----------------------------------------CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 481 ----------------------------------------NS---------ADILHERGIVNFKFKDFNAAVEDLSACVK 511 (903)
Q Consensus 481 ----------------------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 511 (903)
.+ +.++...|..++-.|++-.|...|++++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00 22344556677778999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002594 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (903)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 591 (903)
++|.+...|..+|.+|...++.++-...|.++..++|+++++|++.|++++-++++++|+.-|++++.++|++..++..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHHHH
Q 002594 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD------SMEKFVLQCLAFYQ 665 (903)
Q Consensus 592 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~ 665 (903)
+.+.++++++++++..|+.+....|+.++++...|.++..+++|++|++.|++|+++.|. ++..++..++...+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999 55544444443333
Q ss_pred HHHHHHHhhcHHHHHHHHhhhhccCCCcHHHH
Q 002594 666 KEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (903)
Q Consensus 666 ~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w 697 (903)
..++++.|..++.+++++||...-..
T Consensus 515 ------wk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 515 ------WKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred ------hhhhHHHHHHHHHHHHccCchHHHHH
Confidence 45899999999999999999876553
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.2e-25 Score=240.77 Aligned_cols=300 Identities=21% Similarity=0.226 Sum_probs=259.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (903)
.|......-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-...|-..+..-....++..+.+--
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 34444455677899999999777788888888999999999999999999999999988877666666677777776665
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (903)
+--.+.+..+..+|+.|+.|..+|.||..+++++.|+++|+++++++|....+|..+|.=+.....+|.|..+|+.|+..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 55566677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHH
Q 002594 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (903)
Q Consensus 547 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 626 (903)
+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+.+|++|+.++|.++-..+..|
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCc
Q 002594 627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF 693 (903)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~ 693 (903)
.++..++++++|+..+++..++.|+... +++..|..+-..|+.+.|+..|.-+.+++|.=
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~-------v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESS-------VFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHH-------HHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999999998764 56666777777788889999888888888763
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.3e-25 Score=240.60 Aligned_cols=286 Identities=18% Similarity=0.216 Sum_probs=270.8
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
++..+....++..-++..+|..|+..++|++|.++|+.+-+..|-..+..-....+++.+.+--+--.+.+..+..+|+.
T Consensus 341 ~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s 420 (638)
T KOG1126|consen 341 LFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS 420 (638)
T ss_pred HHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC
Confidence 45556667778888999999999999999999999999999999887777777888888877666666677788999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (903)
++.|..+|.||..+++++.|+++|++|++++|....+|..+|.-+.....++.|..+|+.++..+|.+..+|+.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 608 (903)
++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|+..+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
++.-++.|++..+++.+|.+|.++|+.+.|+..|--|.+++|.-.+
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999999999999999999999999999999999997654
No 22
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.1e-24 Score=223.25 Aligned_cols=277 Identities=17% Similarity=0.164 Sum_probs=261.8
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (903)
..+++.....+..++..++|.+..++++..++.+|-+..++...-.++...|+..+-...-.+.....|+.+..|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 45788999999999999999999999999999999998887666569999999999888889999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (903)
.|...|++.+|..+|.++..++|....+|...|..+...|..++|+.+|..|.++.|........+|.-|...+.++-|.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002594 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-------RFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (903)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~ 610 (903)
.+|.+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++.+++|+.+|++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999984322 1245688999999999999999999999
Q ss_pred hHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++.-
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999999999999999999999999999854
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.1e-23 Score=231.24 Aligned_cols=309 Identities=16% Similarity=0.091 Sum_probs=266.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR 455 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 455 (903)
.....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 355567779999999999999999999999999999999999999999999999999999998854332 3578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 002594 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI 530 (903)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~ 530 (903)
|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999887753 3566789999999
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
|++++|+..|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876 4567889999999999999999999
Q ss_pred HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhh----
Q 002594 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI---- 685 (903)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~---- 685 (903)
++++..|+... +..++.++...|++++|+..++++++..|++..... ++.........|+..+++..++.
T Consensus 274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~-----l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR-----LLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH-----HHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999998654 489999999999999999999999999998865321 11111111113466666665543
Q ss_pred hhccCCCcH
Q 002594 686 DGDIDPLFK 694 (903)
Q Consensus 686 a~~~~p~~~ 694 (903)
.+..+|+|.
T Consensus 348 ~~~~~p~~~ 356 (389)
T PRK11788 348 QLKRKPRYR 356 (389)
T ss_pred HHhCCCCEE
Confidence 456677754
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=7.8e-23 Score=208.84 Aligned_cols=279 Identities=16% Similarity=0.182 Sum_probs=254.4
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWKR 454 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (903)
+...+.-+..+..++.+|+++.|++++.-.-+.+.... .+-.++..+++.+ .++..|..+...++.++.-++.++.+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 34456667889999999999999999976665554432 3445555555553 47899999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 534 (903)
.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 99999999999999999999999888889999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc
Q 002594 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (903)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 614 (903)
+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+..-.+|..|....-.++|+.+|+++.-+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHH
Q 002594 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (903)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 656 (903)
.|+........+.|+.+.|+|..|...|+..-...|.+.+-+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 999988999999999999999999999999999999998743
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.91 E-value=2.2e-21 Score=192.36 Aligned_cols=319 Identities=15% Similarity=0.193 Sum_probs=256.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 002594 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (903)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~ 119 (903)
.-+.+++..|++..|+..|-.||+.+ .+-..++.||-+|+.+|+-.-|+.++.++|++.|+...|.+.+|.+++++|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 56778999999999999999999999 56677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCcccc
Q 002594 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (903)
Q Consensus 120 ~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (903)
++|...|.+.|.+.|......... ..+
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaq-----------skl------------------------------------------ 149 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQ-----------SKL------------------------------------------ 149 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHH-----------HHH------------------------------------------
Confidence 999999999965444332110000 000
Q ss_pred cccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCC
Q 002594 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (903)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 279 (903)
T Consensus 150 -------------------------------------------------------------------------------- 149 (504)
T KOG0624|consen 150 -------------------------------------------------------------------------------- 149 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhh
Q 002594 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (903)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (903)
. . .
T Consensus 150 ------------------------------------------------------------------~-------~----~ 152 (504)
T KOG0624|consen 150 ------------------------------------------------------------------A-------L----I 152 (504)
T ss_pred ------------------------------------------------------------------H-------h----H
Confidence 0 0 0
Q ss_pred HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (903)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (903)
. .-..+..+...++..|++..|+.....+|+..|=++..+..++.||...|+...|+..+.
T Consensus 153 ~-------------------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 153 Q-------------------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred H-------------------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 012234455667788999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHH
Q 002594 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVNFKFKDFNAAVEDLS 507 (903)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~g~~~~A~~~~~ 507 (903)
.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++-. -+.-....++|.++++..+
T Consensus 214 ~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 214 QASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGE 293 (504)
T ss_pred HHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987544321 1333455677888888888
Q ss_pred HHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002594 508 ACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (903)
Q Consensus 508 ~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 583 (903)
+.++.+|..+. ....+..|+..-+++.+|+..+.++++.+|++..++...+.+|+....|+.|+..|+++.+.+++
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88888777443 34456677777788888888888888888888888888888888888888888888888888877
Q ss_pred CHHHH
Q 002594 584 FSKAY 588 (903)
Q Consensus 584 ~~~~~ 588 (903)
+..+.
T Consensus 374 n~~~r 378 (504)
T KOG0624|consen 374 NTRAR 378 (504)
T ss_pred cHHHH
Confidence 65543
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.3e-21 Score=196.83 Aligned_cols=304 Identities=15% Similarity=0.082 Sum_probs=261.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (903)
-++.++......++++.-++..... .|++...-...|.+.....++++|+..|+.+.+.+|-..+-.-....+++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 3445555666888888888888877 788888888899999999999999999999999999776666666677766666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
-.+---+.+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 55555566677778887888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHH
Q 002594 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (903)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 624 (903)
+++|.+..+|+.+|++|.-++-..=|+-+|++|+...|.++..|..+|.||.++++.++|+++|.+++.....+..++..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc-------cCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 625 RASCYHAIGEYREAIKDYDAALDLE-------LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
+|.+|.++++..+|..+|++.++.. |+-.. +...++.-....+++++|-.+...+...++.-.+.
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-------a~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-------ARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-------HHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 9999999999999999999999843 22222 22225555567789999999888887776665544
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.8e-21 Score=206.06 Aligned_cols=259 Identities=18% Similarity=0.205 Sum_probs=239.7
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002594 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (903)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (903)
...+...+|.+...+...--+++..|+..+-..+-.+..+.+|+.+-.|+..|..|+..|++.+|..+|.++..++|...
T Consensus 267 t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 267 TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 45667788888777766555999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
.+|...|..+...|..+.|+..|..|-++.|........+|.-|...++++-|..+|.+|+.+.|.++-++..+|.+.+.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT 426 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 002594 530 IGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (903)
.+.|.+|..+|+.++..-+ .....+.+||.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 9999999999999994322 234668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccCCCCHHHHHHHHHH
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~ 628 (903)
.|+++|.+++.+.|++..+-..|+.+
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999987666655533
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.8e-21 Score=192.98 Aligned_cols=315 Identities=17% Similarity=0.221 Sum_probs=279.1
Q ss_pred ccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002594 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (903)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (903)
...|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-..|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPNSA---DILH------------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 519 (903)
.|.+++.+|.++.|...|...++.+|.+. ++.. .....+.-.|++..|+......+++.|-+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 99999999999999999999999999542 2222 22334556789999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH---------
Q 002594 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL--------- 590 (903)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------- 590 (903)
+...+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ---HHHHHHHCCCHHHHHHHHHHhHccCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 002594 591 ---RGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (903)
Q Consensus 591 ---la~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 663 (903)
-+.-....++|.++++..++.++.+|..+. ....+..|+..-|++-+|+....++++++|++.+ ++
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-------~l 344 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-------VL 344 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-------HH
Confidence 133455678999999999999999998544 4445788899999999999999999999999986 55
Q ss_pred HHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 664 YQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
..++.++.....|+.|+..|+++.+.++++...
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 667777777889999999999999999998765
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=3.4e-19 Score=210.16 Aligned_cols=440 Identities=10% Similarity=-0.011 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChh-HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHH--HHH
Q 002594 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK--GCA 112 (903)
Q Consensus 36 ~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~l--G~~ 112 (903)
+...+.++--.+++|+|+.|+..|.++++.+|+.. .....+.++...|+.++|+..|++++ +|++...+..+ |.+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence 33456777778999999999999999999996653 33378888899999999999999999 66555555555 779
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcC
Q 002594 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENH 192 (903)
Q Consensus 113 ~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (903)
+..+|++++|+..|+++++..|..+..+..+..+.-.....
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~--------------------------------------- 152 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG--------------------------------------- 152 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH---------------------------------------
Confidence 99999999999999999888877765442211110000000
Q ss_pred CCCcccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCccc
Q 002594 193 NKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272 (903)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (903)
......+.+.
T Consensus 153 ------------~eAl~~l~~l---------------------------------------------------------- 162 (822)
T PRK14574 153 ------------GVVLKQATEL---------------------------------------------------------- 162 (822)
T ss_pred ------------HHHHHHHHHh----------------------------------------------------------
Confidence 0000000000
Q ss_pred ccccCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhh
Q 002594 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW 352 (903)
Q Consensus 273 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (903)
.........+..+ .+...
T Consensus 163 ------------------------------------------------------------~~~dp~~~~~l~l--ayL~~ 180 (822)
T PRK14574 163 ------------------------------------------------------------AERDPTVQNYMTL--SYLNR 180 (822)
T ss_pred ------------------------------------------------------------cccCcchHHHHHH--HHHHH
Confidence 0000000000000 00000
Q ss_pred hhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcC-
Q 002594 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL--IGRGTARAFQR- 429 (903)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g- 429 (903)
+ ..........+.+++...|.+.+.+..+...+...|-...|.++..+--.........+ ...+.-..+..
T Consensus 181 ~------~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 181 A------TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred h------cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 0 00010122344555556666666666666666666666655544433211111111111 11111111111
Q ss_pred -----------CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 002594 430 -----------ELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERG 490 (903)
Q Consensus 430 -----------~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 490 (903)
-.+.|+..++..+...+..+ .+..-.-.++...|++.+++..|+.+.... |--..+....|
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 12345555555555322211 122333444555666666666666655433 11233555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------c
Q 002594 491 IVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------N 549 (903)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~ 549 (903)
..|+..+++++|+.+|+.++.-.| .+......|..++...+++++|..++++..+..| +
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 666666666666666666665442 1222234556666666666666666666665333 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHH
Q 002594 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (903)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 629 (903)
..++...++.++...|++.+|++.+++.+...|.+..+...+|.++...|.+.+|...++.+..++|++..+...+|.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 24555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 630 HAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 630 ~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
..+|++.+|....+++++..|+++.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchh
Confidence 6666666666666666666666654
No 30
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.7e-21 Score=201.81 Aligned_cols=201 Identities=23% Similarity=0.353 Sum_probs=157.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHH
Q 002594 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQF 560 (903)
Q Consensus 488 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~ 560 (903)
.+|...+...++..|++.|..++.++ .+...+.+.+.+++..|.+.+.+.....+++...... .+...+|..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555666666666666666 5556666666666666666666666666655544332 223345667
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc
Q 002594 561 YQDLANSEKALECLQQVLYIDK--------------------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (903)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~p--------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 614 (903)
|...++++.|+.+|.+++.... .-..-....|..++..|+|..|+.+|.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 7778899999999999875432 22233455689999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcH
Q 002594 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (903)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~ 694 (903)
+|+++..|.++|.||..+|++..|+...+++++++|+... +|.++|.+++...+|+.|+..|..+++.+|...
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-------gy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-------AYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999999999999999999999999999998765 777889999999999999999999999999999
Q ss_pred HH
Q 002594 695 EY 696 (903)
Q Consensus 695 ~~ 696 (903)
++
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 88
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.3e-20 Score=211.85 Aligned_cols=281 Identities=19% Similarity=0.115 Sum_probs=249.0
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEA 441 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (903)
....+.+++...|.++..++.+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|.++
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3446677778889999999999999999999999999999998754332 357889999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (903)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (903)
++..|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..++++++.+|++
T Consensus 134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 999999999999999999999999999999999999887653 356678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002594 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (903)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 595 (903)
..++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++...|+... +..++.++
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~ 292 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHH
Confidence 9999999999999999999999999999998876 567889999999999999999999999999998754 48899999
Q ss_pred HHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 002594 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALD 647 (903)
Q Consensus 596 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 647 (903)
...|++++|+..++++++..|++..+...++..+.. .|+..+|+..+++.++
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999999999999999999987665555544432 5588888888887765
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.5e-20 Score=190.66 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002594 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIV 492 (903)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (903)
+.-...+.-+++.|+++.|++.+.-.-..+... ..+-.++..+++.+ .++..|..+...++..+..++.++.+.|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 344567888899999999999887655554443 33455666666664 378999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Q 002594 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (903)
Q Consensus 493 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 572 (903)
.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 573 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+....||..|....-.++|+.+|+++.-+.|+.
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhh
Q 002594 653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (903)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 685 (903)
.... ...+.++...|+|.+|+..|+.
T Consensus 660 ~kwq-------lmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 660 SKWQ-------LMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHH-------HHHHHHHHhcccHHHHHHHHHH
Confidence 6522 2235556667899999998853
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-20 Score=194.46 Aligned_cols=276 Identities=18% Similarity=0.174 Sum_probs=255.1
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
.|.+.-.-...|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-..+-.+-.-+.+.+..++.-.++....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 67778888889999999999999999999999999988877777788887777766666666777788888888889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 536 (903)
..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|.+|.-++...=|
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc---
Q 002594 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613 (903)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 613 (903)
+-+|++|++..|++...|..||.+|.++++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred ----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 614 ----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 614 ----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
..|....+...|+..+.+.+++++|..+...++.-++.-
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 456566788889999999999999999999888775543
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.6e-18 Score=183.88 Aligned_cols=322 Identities=16% Similarity=0.093 Sum_probs=263.8
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (903)
+.-..|+.-+..+...+.++-|+..|..+|+.+|.....|...+..-...|..++-..++++++...|.....|...+.-
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 33566777788888888888888888888888888888888777777777888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (903)
+...|+...|...+.++++.+|++.++|+.-..+.....+++.|..+|.++....|. ..+|+.-+.+...++..++|+.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHH
Confidence 888888888888888888888888888888888888888888888888888776654 4677777777788888888888
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC
Q 002594 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (903)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 618 (903)
+++++++..|++...|..+|+++.++++.+.|...|...+...|..+..|..++.+-...|+.-.|...++++.-.+|++
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHH-----------------------HHHHHHHHHHHHhhc
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC-----------------------LAFYQKEIALYTASK 675 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 675 (903)
+..|.....+-.+.|+.+.|.....+|++-.|++...|.... .+....+..++...+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 888888888888888888888888888888887765543211 235556778889999
Q ss_pred HHHHHHHHhhhhccCCCcHHHHHhhc
Q 002594 676 INSEFCWFDIDGDIDPLFKEYWCKRL 701 (903)
Q Consensus 676 ~~~A~~~l~~a~~~~p~~~~~w~~r~ 701 (903)
+++|..+|.++..++|++.+.|++..
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHH
Confidence 99999999999999999999997654
No 35
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.8e-19 Score=180.12 Aligned_cols=295 Identities=18% Similarity=0.128 Sum_probs=274.1
Q ss_pred hHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002594 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (903)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (903)
.+..++...++........|.++..+..+|.+++..|++++|+..|+++.-.+|....+.-..|..+...|+++.-....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 33445556667777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002594 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (903)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (903)
...+........-|+--+...+..+++..|+.+-+++++.+|++...+...|.++..+++.++|+-.|+.+..+.|...+
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002594 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (903)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 596 (903)
.|..+-.+|...|++.+|....+.+++..|.++.++..+| .++. .-.--++|.+++++++.+.|....+-..+|.++.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999886 4433 3344589999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 597 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
..|.++.++..+++.+...|+ ...+..+|.++...+.+.+|+.+|..|+.++|++..
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999887 578999999999999999999999999999999854
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=3.4e-19 Score=198.63 Aligned_cols=300 Identities=15% Similarity=0.125 Sum_probs=235.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWK 453 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 453 (903)
.+.+.|..++....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|+...|...|.++++..|.. .+...
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999999999999932 22334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------
Q 002594 454 RRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE-------------- 515 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-------------- 515 (903)
..+..+...++-+.|++.++.++.... ...+-+..++.+++....++.|.......... .++
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 557778888888999999999988332 23456778899999999999999888766551 011
Q ss_pred ------------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002594 516 ------------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (903)
Q Consensus 516 ------------~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (903)
+..+ ...++.+....+...+++..+..--...| +.++.+..++.+|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 34444455555555566555543322224 447899999999999999999999999998776
Q ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--cHHHHHH
Q 002594 582 K-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVL 658 (903)
Q Consensus 582 p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~ 658 (903)
+ ++..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.++....-++. ...++..
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 5 456789999999999999999999999999999999999999999999999999999999987733322 2333444
Q ss_pred HHHHHHHHHHHHHHhhcHHH
Q 002594 659 QCLAFYQKEIALYTASKINS 678 (903)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~ 678 (903)
..-..+.+...+...|+.++
T Consensus 525 e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 44455666667777777665
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=5.9e-22 Score=211.00 Aligned_cols=264 Identities=20% Similarity=0.225 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
..+.+|..++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3457799999999999999999766544 488999999999999999999999999999999999998888888888 7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 538 (903)
..+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++...|+.++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988765 57777888889999999999999999987655 6788999999999999999999999
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC
Q 002594 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (903)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 618 (903)
.|+++++.+|++..+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
+.++..+|.++...|+.++|..++++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998754
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=4.7e-19 Score=205.81 Aligned_cols=264 Identities=14% Similarity=0.005 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHH
Q 002594 383 FRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSAGE 450 (903)
Q Consensus 383 ~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 450 (903)
.++..|...+.. +++++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 445566555443 3567888899999999998888888888877643 3478888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002594 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (903)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 530 (903)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888877766677777778
Q ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 531 GEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 531 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++..+...|+ +|...++
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 88888888888888774 67788888888888888888888888888887778777778888888877773 6766666
Q ss_pred HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
+.++.....+.-....+.+|.-.|+.+.|..+ +++.+..
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66554333333333477777778887777776 6665543
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.3e-18 Score=194.05 Aligned_cols=303 Identities=22% Similarity=0.237 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
+..++..|..++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.++|...+-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 002594 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK 535 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 535 (903)
++|++..|+-+|.+|++.+|.+....+..+.+|.++|+...|+..|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998322 223344667777788888
Q ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------
Q 002594 536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY---------------------------------- 579 (903)
Q Consensus 536 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------------------- 579 (903)
|++.+..++... ....+.+..++.++.....++.|.........
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 888888888732 22234455566666666666666555443322
Q ss_pred ---------------------------hC--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC-CHHHHHHHHHH
Q 002594 580 ---------------------------ID--K-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC 628 (903)
Q Consensus 580 ---------------------------~~--p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~ 628 (903)
.+ | +.+..+..++.++...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 01 1 23556889999999999999999999999987664 46799999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccC
Q 002594 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (903)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 690 (903)
|..+|.+++|+++|++++.+.|++.++.+.++. .+..+|+.++|++.+.....-|
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las-------l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLAS-------LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH-------HHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999986665544 4555689999999887654333
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=2.4e-17 Score=194.64 Aligned_cols=226 Identities=12% Similarity=-0.007 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Q 002594 397 YASAISIFDQILKEDPMYP-------EALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEA 468 (903)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 468 (903)
.+.|+..+++++...+..| .+...+-.++...+++.+++..|+.+.... |--..+....|..|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3567777777777433322 344556667788999999999999887554 23455778899999999999999
Q ss_pred HHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHH
Q 002594 469 IQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK---------------ENKSAYTYLGLAL 527 (903)
Q Consensus 469 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~ 527 (903)
+.+|..++.-.| .+......|...|...+++++|..++++..+..| +...+...++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999988653 2333457788899999999999999999988544 2346778889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 002594 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (903)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 607 (903)
...|++.+|++.+++.+...|.+..++..+|.++...|.+.+|+..++.+..++|++..+...+|.++..++++.+|...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHccCCCCHHHH
Q 002594 608 LSSGLGIDPSNIECL 622 (903)
Q Consensus 608 ~~~al~~~p~~~~~~ 622 (903)
.+.+++..|+++.+.
T Consensus 507 ~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 507 TDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhCCCchhHH
Confidence 999999999998544
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=172.43 Aligned_cols=243 Identities=14% Similarity=0.121 Sum_probs=196.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (903)
..+|.||+..|-+.+|...++..++..|. ++.+..++.+|....+...|+..|...++..|.+...+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 46788888888888888888888877664 77788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
+++|+++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.|++..++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 88888888888888888888877788888888888888888888888888888888888888888888888888888887
Q ss_pred HhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHH
Q 002594 545 QLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (903)
Q Consensus 545 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 621 (903)
....+ -.++|+++|.+....|++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..+++.+-...|+-.+.
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 76432 267788888888888888888888888888888888888888888888888888888888888888877666
Q ss_pred HHHHHHH
Q 002594 622 LYLRASC 628 (903)
Q Consensus 622 ~~~la~~ 628 (903)
.++++.+
T Consensus 466 ~~Nl~~~ 472 (478)
T KOG1129|consen 466 TTNLQFM 472 (478)
T ss_pred ccceeEE
Confidence 6666543
No 42
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.8e-17 Score=181.98 Aligned_cols=287 Identities=16% Similarity=0.128 Sum_probs=245.8
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (903)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (903)
..+++.+..+|.++.+.+.++..|...++.+.|.++.+++++. ..+++.+|..+|.++...+++.+|+...+.++...|
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 4667788889999999999999999999999999999999999 456789999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 002594 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---------ILHERGIVNFKFKDFNAAVEDLSACVKL----- 512 (903)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~----- 512 (903)
+|.........+-...++.++|+..+...+.+-..... .....+......++..+|+..++++...
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 98887777777778889999999998887766432222 2222233333344555566555554332
Q ss_pred ----------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Q 002594 513 ----------------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (903)
Q Consensus 513 ----------------~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 571 (903)
.|+. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++...|+.++|.
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 1111 2456778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 572 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
..|..++.++|+++.....+|.++...|+..-|.. .+..+++++|.++++|+.+|.++...|+.++|.++|..|++++
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999998888887 9999999999999999999999999999999999999999999
Q ss_pred cCcHH
Q 002594 650 LDSME 654 (903)
Q Consensus 650 p~~~~ 654 (903)
+.+|-
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 88763
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=2.7e-18 Score=199.57 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=205.0
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHH
Q 002594 418 LIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI 485 (903)
Q Consensus 418 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 485 (903)
++..|..+... +.+++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 34445444332 4568999999999999999999999999987644 34899999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 002594 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (903)
Q Consensus 486 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 565 (903)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777788899
Q ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 566 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
++++|+..+++++... |+++.++..+|.++..+|++++|...+.+.....|....+...++.+|...|+ +|...+++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 9999999999999875 78889999999999999999999999999999999988999999999999884 77777776
Q ss_pred HHhh
Q 002594 645 ALDL 648 (903)
Q Consensus 645 al~l 648 (903)
.++.
T Consensus 499 ll~~ 502 (553)
T PRK12370 499 FLES 502 (553)
T ss_pred HHHH
Confidence 6554
No 44
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-18 Score=177.39 Aligned_cols=291 Identities=20% Similarity=0.234 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 002594 33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (903)
Q Consensus 33 ~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~ 111 (903)
...+.....+++.+++.+.|..|+..|+.||..+ .+...|.|||.++..+|+|++|..+++..+.++|...+++.+.|+
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 4455556688899999999999999999999999 555668899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhc
Q 002594 112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN 191 (903)
Q Consensus 112 ~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (903)
|+..+++..+|...|+.. . +. .+.+.+ ..+
T Consensus 126 c~~a~~~~i~A~~~~~~~---~--------------~~--~~anal-----~~~-------------------------- 155 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSK---Q--------------AY--KAANAL-----PTL-------------------------- 155 (486)
T ss_pred hhhhhHHHHHHHHHhhhh---h--------------hh--HHhhhh-----hhh--------------------------
Confidence 999999999999777633 0 00 000111 000
Q ss_pred CCCCcccccccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcc
Q 002594 192 HNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271 (903)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (903)
......
T Consensus 156 -------------------------------------------~~~~~s------------------------------- 161 (486)
T KOG0550|consen 156 -------------------------------------------EKLAPS------------------------------- 161 (486)
T ss_pred -------------------------------------------hccccc-------------------------------
Confidence 000000
Q ss_pred cccccCCCcccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhh
Q 002594 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK 351 (903)
Q Consensus 272 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (903)
T Consensus 162 -------------------------------------------------------------------------------- 161 (486)
T KOG0550|consen 162 -------------------------------------------------------------------------------- 161 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 352 WDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (903)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (903)
....|.-..+.+..+.++...|++++|...--.++++++.+.++++..|.+++..++.
T Consensus 162 ----------------------~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~ 219 (486)
T KOG0550|consen 162 ----------------------HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA 219 (486)
T ss_pred ----------------------ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch
Confidence 0000222444566788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGE------------AWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFK 495 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 495 (903)
+.|+..|++++.++|++.. .+...|.-....|++..|.+.|..+|.++|.+ +.+|.+++.+..+
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 9999999999999998743 35566777777777888888888888777764 4467777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 002594 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (903)
Q Consensus 496 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 549 (903)
+|+..+|+..++.++.+++....++...|.|+..++++++|.+.|+++++...+
T Consensus 300 Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777777777777777777777777777777777777777777777777776554
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.2e-17 Score=187.20 Aligned_cols=300 Identities=14% Similarity=0.025 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR 459 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 459 (903)
....+..|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445578899999999999999999999999999888899999999999999999999999999999885 5666679999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 002594 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK 535 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 535 (903)
...|+++.|+..++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988655544332 22222244455555
Q ss_pred HHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Q 002594 536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 536 A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~ 609 (903)
+...+.++....| +++..+..++..+...|++++|+..++++++..|++.... ..........++.+.+++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 6678888888777 5899999999999999999999999999999999887532 223333445688999999999
Q ss_pred HhHccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhh
Q 002594 610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (903)
Q Consensus 610 ~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 685 (903)
++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +...|..+...|+.++|..++++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--------~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--------LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 889999999999999999999999 68888887754 23457778888999999988877
Q ss_pred hhc
Q 002594 686 DGD 688 (903)
Q Consensus 686 a~~ 688 (903)
++.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 643
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=2.1e-17 Score=176.98 Aligned_cols=326 Identities=13% Similarity=0.099 Sum_probs=288.0
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (903)
..-.+...+.-.|.....|+..+..--..|..++-..+|++++..-|.....|.+.+..+...|+...|...+..+++.+
T Consensus 535 arAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 33455667788888889999988888888999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002594 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (903)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 525 (903)
|++.+.|+....+.....+++.|..+|.++....| ...+|+.-+.+...+++.++|+.+++++++..|.....|..+|.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQ 693 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhH
Confidence 99999999988899999999999999999988777 67788888999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002594 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (903)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 605 (903)
++.++++.+.|...|...++..|..+..|..++.+-...|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHccCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHH
Q 002594 606 KDLSSGLGIDPSN------------------------------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (903)
Q Consensus 606 ~~~~~al~~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 655 (903)
..+.+|++..|.+ +.++...|..+....++++|.++|.++++.+|++.++
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 9999998766554 3566678899999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHHHHh
Q 002594 656 FVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (903)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w~~ 699 (903)
|......+ ..+|.-+.-.+.|+++...+|.+.+.|+.
T Consensus 854 wa~fykfe-------l~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 854 WAWFYKFE-------LRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHH-------HHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 75433322 34466666777888899999999999954
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=3.1e-20 Score=197.76 Aligned_cols=268 Identities=21% Similarity=0.208 Sum_probs=120.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002594 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486 (903)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 486 (903)
+..|. .. .+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~-~~-~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS-EE-ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455 33 346799999999999999999766544 488999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc
Q 002594 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDL 564 (903)
Q Consensus 487 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 564 (903)
..++.+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++.... +.++..|..+|.++.+.
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred cccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 888888 799999999999999988764 46667778888999999999999999977655 67789999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 565 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
|+.++|+.+|+++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.++..+|++++|+.+|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 645 al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
+++.+|+++... ...+.++...|+.++|...+.++.
T Consensus 240 ~~~~~p~d~~~~-------~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLNPDDPLWL-------LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHSTT-HHHH-------HHHHHHHT----------------
T ss_pred cccccccccccc-------cccccccccccccccccccccccc
Confidence 999999998744 445666677789999988876654
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9e-18 Score=170.92 Aligned_cols=302 Identities=16% Similarity=0.081 Sum_probs=273.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (903)
.|.++.....+.-+..++-......|++...+..+|.+++..|++++|+.-|+++..++|....+.-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 34444444445555566666677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (903)
.--......+........-|+.-+..++..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 99999999998888788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH-CCCHHHHHHHHHHhHccCCCCHHHHHH
Q 002594 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG-LLLHG-LGQHKKAIKDLSSGLGIDPSNIECLYL 624 (903)
Q Consensus 547 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~ 624 (903)
.|...+.|..+..+|...|++.+|....+.++...|.++.++..+| .++.. -.--++|.+.+++++.+.|....+-..
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999886 55443 334578999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
+|.++...|.+++++..+++++...||.. .....|..+.+.+.+++|+.+|.+++.+||..+..
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--------LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVN--------LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccH--------HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 99999999999999999999999999873 45567778888899999999999999999998865
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=7.2e-19 Score=187.60 Aligned_cols=254 Identities=18% Similarity=0.213 Sum_probs=179.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (903)
+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..+.++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 002594 465 SVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKK 535 (903)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 535 (903)
-.+|+.++.+.+...|........ ...-......+..-.+.|..+....| .++++...||.+|...|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888888888776643211110 00000111123334455556666666 567777777777777777777
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
|+.+|+.||...|++...|..||-.+....+.++|+..|++|+++.|....+++++|.+++.+|.|++|+++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777664
Q ss_pred CCC----------HHHHHHHHHHHHHcCCHHHH
Q 002594 616 PSN----------IECLYLRASCYHAIGEYREA 638 (903)
Q Consensus 616 p~~----------~~~~~~la~~~~~~g~~~~A 638 (903)
+.. ..+|-.|-.++..+++.+-+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 431 13555555555555555533
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=7.8e-17 Score=179.49 Aligned_cols=297 Identities=12% Similarity=0.034 Sum_probs=242.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAIQSNPSAGEA-WKRRGQA 458 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~ 458 (903)
....+..|...+..|+++.|.+.+.+.-+..+. +..++.+ +.+....|+++.|..++.++.+.+|++..+ ....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 445678888999999999999888776554333 4554444 666699999999999999999999998544 3455999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT--------YLGLALSSI 530 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~ 530 (903)
+...|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988776544222 222222233
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002594 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (903)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 610 (903)
.+.+.....++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.+++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence 34455555555555566778999999999999999999999999999994 4456555555544 44999999999999
Q ss_pred hHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhcc
Q 002594 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (903)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~ 689 (903)
.++..|+++..+..+|.++...|++++|.++|+++++..|++.. +...+.++...|+.++|..+|.+++.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--------~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--------YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999754 445677788889999999999887654
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=8.8e-18 Score=179.09 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002594 395 GKYASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (903)
Q Consensus 395 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (903)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666777777775333 2355677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 002594 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (903)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (903)
.|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 7777777777777777777777777777777777777777777766532111 122334556677777665555432221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC-CCHHHH
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVL-------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL 622 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~ 622 (903)
.|. .+.++...|+..++ ..+..+. ++.|..+++|+.+|.++...|++++|+.+|+++++.+| +..+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23333444544332 1222222 33444455666666666666666666666666666664 444444
Q ss_pred HHHHHHH
Q 002594 623 YLRASCY 629 (903)
Q Consensus 623 ~~la~~~ 629 (903)
+.+..+.
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 4444333
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=4.8e-17 Score=182.25 Aligned_cols=282 Identities=14% Similarity=0.026 Sum_probs=239.0
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
....+.+..+..|.....++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++++++.
T Consensus 103 A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~ 182 (409)
T TIGR00540 103 AEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM 182 (409)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33344566677788888899999999999999999999999999999875 56666799999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----CC
Q 002594 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----EN 516 (903)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p----~~ 516 (903)
.|+++.++..++.++...|++++|++.+.+..+....++..+. ....-+...+..+++...+.++....| ++
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 9999999999999999999999999999999987554444321 222222445555666778888888887 58
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHH
Q 002594 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRG 592 (903)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la 592 (903)
+..+..++..+...|++++|...++++++..|++.... ..........++.+.++..++++++..|+++ .....+|
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg 342 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 99999999999999999999999999999999987532 2223333446888999999999999999999 8899999
Q ss_pred HHHHHCCCHHHHHHHHH--HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 593 LLLHGLGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 593 ~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
.++...|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999 57788887554 669999999999999999999998765
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3e-18 Score=169.33 Aligned_cols=264 Identities=14% Similarity=0.069 Sum_probs=241.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002594 390 AQVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (903)
Q Consensus 390 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (903)
+++..++...|-..+...++.+ |. +-..-..+|.||+.+|-+.+|.+.++.+++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4666778888887777766543 21 112235789999999999999999999998776 478888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 539 (903)
....+...|+..+...++..|.+...+...+.++..++++++|+++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC
Q 002594 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (903)
Q Consensus 540 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 616 (903)
|++.+++.-.+++.+.++|.+.+..++++-++..|++++.... .-+++|+++|.+....|++.-|..+|+-++..++
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999997644 3468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
++.+++.++|.+-.+.|+.++|..++..|-...|+-.+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 99999999999999999999999999999999998765
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=2.1e-17 Score=176.16 Aligned_cols=223 Identities=23% Similarity=0.255 Sum_probs=184.1
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 428 QRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (903)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 503 (903)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3577889999999996443 3 36789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002594 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (903)
Q Consensus 504 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 583 (903)
..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+++...+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999998742222 22345678999999999887755433
Q ss_pred CHHHHHHHHHHHHHCCCHHHH--HHHHHHh----HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-CcHH
Q 002594 584 FSKAYHLRGLLLHGLGQHKKA--IKDLSSG----LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSME 654 (903)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eA--~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p-~~~~ 654 (903)
.. +. .+.+....|+..++ +..+.+. .++.|...++|+++|.++..+|++++|+.+|+++++++| +..+
T Consensus 198 ~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 198 EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 22 22 35555566665433 3333332 345666788999999999999999999999999999997 4444
No 55
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=5.6e-15 Score=179.44 Aligned_cols=305 Identities=13% Similarity=0.033 Sum_probs=247.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWK 453 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 453 (903)
.+...|..+...|.+.|++++|+.+|+.+.+..- -+...|..+...+.+.|++++|...|.++... .|+ ...+.
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyn 583 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVG 583 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 4678888999999999999999999999976532 24778999999999999999999999999763 344 57888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Q 002594 454 RRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIG 531 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 531 (903)
.+...|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+.|++++|+..|.++.+.. ..+...+..+...+...|
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 89999999999999999999999876 4577899999999999999999999999998763 224678889999999999
Q ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 532 EYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 532 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
++++|..++..+.+.. +.+...+..+...|.+.|++++|..+|+++.... ..+...|..+...|.+.|++++|+++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998864 3457889999999999999999999999986532 2346789999999999999999999999
Q ss_pred HhHcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 610 SGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 610 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
+.... .| +...|..+...+.+.|++++|...+.++++...... .....++ .+.+ .+++++|....+...
T Consensus 744 eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsL----Iglc---~~~y~ka~~l~~~v~ 814 (1060)
T PLN03218 744 EMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCI----TGLC---LRRFEKACALGEPVV 814 (1060)
T ss_pred HHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHH----HHHH---HHHHHHHhhhhhhhh
Confidence 88754 44 467888888999999999999999999988653322 1211122 1221 235666666555555
Q ss_pred ccCCCc
Q 002594 688 DIDPLF 693 (903)
Q Consensus 688 ~~~p~~ 693 (903)
.++++.
T Consensus 815 ~f~~g~ 820 (1060)
T PLN03218 815 SFDSGR 820 (1060)
T ss_pred hhhccc
Confidence 555543
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=6.4e-16 Score=169.89 Aligned_cols=292 Identities=20% Similarity=0.186 Sum_probs=249.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSK 474 (903)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (903)
...+++..++++++.+|+++.+.+.++.-|...++.+.|+....++++.+ .+++.+|..++.++...+++.+|+....-
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999994 56789999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHH
Q 002594 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---------LGLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---------la~~~~~~g~~~~A~~~~~~al~ 545 (903)
++...|+|.........+-...++.++|+..+...+.+-.....+-.. .+......++..+|+..++++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 999999988888888888888999999999998887765433222222 22233334455556655555443
Q ss_pred hC-------------c--------cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002594 546 LD-------------R--------NF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (903)
Q Consensus 546 ~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (903)
.- | +. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 21 1 11 3567788999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHH
Q 002594 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN 677 (903)
Q Consensus 600 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (903)
+..+|.+.|..++.++|+++.+...+|.++...|+..-|.. .+..+++++|.+++ +||..|......|+.+
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWYYLGEVFKKLGDSK 771 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHccchH
Confidence 99999999999999999999999999999999999888888 99999999999997 5667777788889999
Q ss_pred HHHHHHhhhhccCCCcH
Q 002594 678 SEFCWFDIDGDIDPLFK 694 (903)
Q Consensus 678 ~A~~~l~~a~~~~p~~~ 694 (903)
.|..+|.-+..+++..+
T Consensus 772 ~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 99999999999887765
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=7.3e-16 Score=185.53 Aligned_cols=294 Identities=11% Similarity=-0.035 Sum_probs=248.5
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQ 457 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 457 (903)
.+...+..+...|.+.|++++|...|+... +.+..+|..+...|.+.|++++|+..|.+..... .-+...+..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356667778889999999999999998763 4578899999999999999999999999997653 224668889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 458 ARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 536 (903)
++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|+.++|
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999875 45778899999999999999999999998754 3567899999999999999999
Q ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 537 EEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 537 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
++.|++..+.. .-+...+..+...+...|..++|..+|+...+..+ .+...|..+..+|.+.|++++|.+.+++. .
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~ 489 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-P 489 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-C
Confidence 99999988753 22366788888899999999999999999986432 33567888999999999999999999875 3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
..| +..+|..+...+...|+++.|...+++.+++.|++...+ ......|...|++++|...++...
T Consensus 490 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y-------~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 490 FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY-------VVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch-------HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344 467899999999999999999999999999999886543 344556677899999999887544
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=184.69 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=208.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 498 (903)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHH
Q 002594 499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK 569 (903)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 569 (903)
-.+|+.++.+-+...|........ ...-......+..-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887754321110 00011111223455667777778888 689999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 570 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|.++..+|.|++|.++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 002594 650 LD 651 (903)
Q Consensus 650 p~ 651 (903)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 76
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.4e-18 Score=172.16 Aligned_cols=271 Identities=25% Similarity=0.307 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
++.....|..++...+|.+|+..+..+++..|+++..|...+.+++..+++++|....++.+++.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002594 461 ALGESVEAIQDLSKAL------------EFE------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 522 (903)
.+++..+|...++..- .+- |....+...-+.|+...|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 9998888886665221 011 2223455667899999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HH
Q 002594 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL------------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK 586 (903)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 586 (903)
.|.++...++.+.|+..|++++.++|++. ..+..-|.-.++.|++..|.++|..+|.++|++ +.
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 99999999999999999999999999863 456677888999999999999999999999975 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 587 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
.|.+++.+...+|+..+|+...+.+++++|....++...|.|+..++++++|++.|+++++...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78899999999999999999999999999999999999999999999999999999999999876
No 60
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=1.9e-16 Score=177.20 Aligned_cols=226 Identities=16% Similarity=0.104 Sum_probs=200.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (903)
..+...|+..|-+++++++..+.++..+|.+|...-+...|.++|++|.++++.+..+.-..+..|....++++|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCH
Q 002594 542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (903)
Q Consensus 542 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 619 (903)
.+-+..|.. ...|..+|..|.+.+++..|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 777777754 456777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
-..+..+.+...+|+|.+|+..+...+............++..+.+.+..++..|-..+|...+++++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999888766666666666777777666666665555555555443
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=6.7e-17 Score=153.77 Aligned_cols=204 Identities=22% Similarity=0.217 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
..+.+.+|.-|++.|++..|..-++++|+.+|++..+|..+|.+|...|+.+.|-+.|++|+.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (903)
.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555555542 122344455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002594 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (903)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 584 (903)
++++.....+-..+.+.....+....|+-+.|-.+=.+.-...|..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 5555444444444444444444444455444444444444444443
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=8.2e-17 Score=153.20 Aligned_cols=205 Identities=20% Similarity=0.108 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
.+...+|.-|+..|++..|...++++++.+|++..++..++.+|...|+.+.|.+.|++++.++|++.+++++.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 002594 530 IGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 607 (903)
+|++++|...|++++.. .+.....+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|+|-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666666653 2333566666666666667777777777777777776666666667777777777777777
Q ss_pred HHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
+++.....+-..+.+.....+-...|+-+.|.++=.+.....|...+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 66666666666666666666666677766666666666666666554
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=5.2e-16 Score=172.89 Aligned_cols=265 Identities=14% Similarity=0.025 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (903)
.-.++..+......|+++.|..+|.++.+.+|++..+. ...+.++...|+++.|+..++++.+.+|+++.++..++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44455556777999999999999999999999975443 45599999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 460 AALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 531 (903)
...|++++|+..+.+..+..+.++.... .+........+-+...+.++...+..|+++.+...++..+...|
T Consensus 198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 198 IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 9999999999999999988765544222 11222222334445555555555566789999999999999999
Q ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 002594 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 611 (903)
+.++|...++++++. +.++.....++.+ ..++.++++..+++.++.+|+++..+..+|.++...+++++|..+|+++
T Consensus 278 ~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 278 DHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred CHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999994 4455555445544 4599999999999999999999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 355 l~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 355 LKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999985 556789999999999999999999998865
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1e-16 Score=165.78 Aligned_cols=200 Identities=19% Similarity=0.146 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (903)
...+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002594 529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 606 (903)
..|++++|+..+.+++... +.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 5555666665555555432 33445566666666667777777777777766666666666677777777777777777
Q ss_pred HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777776666666666666677777777777777666655544
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.2e-16 Score=165.16 Aligned_cols=201 Identities=21% Similarity=0.241 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (903)
.+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (903)
...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887643 3345566667777777777777777777777777777667777777777777777777
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (903)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (903)
..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777776666666666666666666667777766666655443
No 66
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=8.7e-14 Score=169.20 Aligned_cols=266 Identities=15% Similarity=0.040 Sum_probs=220.7
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWK 453 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 453 (903)
.+...|..+...+.+.|++++|.++|.++... .|+ ...|..+...|.+.|++++|.+.|+.+.+.. +.+...|.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 45778889999999999999999999999763 344 6788888999999999999999999999876 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Q 002594 454 RRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSI 530 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 530 (903)
.+...|.+.|++++|+..|.++.+. .| +...+..+...+.+.|++++|.+++..+.+.. +.+...+..+...|.+.
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999876 45 56788999999999999999999999999875 44678899999999999
Q ss_pred CCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Q 002594 531 GEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKD 607 (903)
Q Consensus 531 g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 607 (903)
|++++|...|++.... .| +...|..+...|.+.|++++|+++|+++.... ..+...|..+...+.+.|++++|..+
T Consensus 698 G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998654 34 46789999999999999999999999987542 23466777888999999999999999
Q ss_pred HHHhHccC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002594 608 LSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 608 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 650 (903)
+..+++.. |+ ...+..+-.++. +++++|....+..+..++
T Consensus 777 ~~~M~k~Gi~pd-~~tynsLIglc~--~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 777 LSQAKEDGIKPN-LVMCRCITGLCL--RRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc
Confidence 99998763 43 344444332222 357777777666665544
No 67
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=1.2e-16 Score=169.49 Aligned_cols=266 Identities=17% Similarity=0.139 Sum_probs=177.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002594 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGI 491 (903)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (903)
+...++-.+-.++...+.+++|+..+.++++++|++..+|..++.++..+| ++++++..++++++.+|++..+|..++.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 344555455555666677777777777777777777777777777777777 5677777777777777777777777777
Q ss_pred HHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---CC
Q 002594 492 VNFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---AN 566 (903)
Q Consensus 492 ~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~ 566 (903)
++...|+. ++++.++.++++.+|.+..+|...+.++...|++++|+.++.++++.+|.+..+|...+.++... |.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 77777653 56677777777777777777777777777777777777777777777777777777777776554 22
Q ss_pred H----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 567 S----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (903)
Q Consensus 567 ~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (903)
+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.++.++-.++.+|.......
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~-- 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT-- 272 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc--
Confidence 2 356666667777777777777777777666 344556777777777766777777777777766422110
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHHHHhhc
Q 002594 639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (903)
Q Consensus 639 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w~~r~ 701 (903)
..++..++..... ....++|...+....+.||--+.||..|.
T Consensus 273 -~~~~~~~~~~~~~--------------------~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 273 -AEFRDTVDTLAEE--------------------LSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred -hhhhhhhhccccc--------------------cccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 1111111110000 12345677777776789999999997654
No 68
>PLN03077 Protein ECB2; Provisional
Probab=99.76 E-value=1e-14 Score=179.99 Aligned_cols=299 Identities=11% Similarity=-0.031 Sum_probs=246.6
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (903)
..+...+..+...|.+.|++++|.++|++..+ .+...|..+...|...|+.++|+..|.+++...+.+...+..+-.
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 34567778888999999999999999998643 356688999999999999999999999998765556677777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 458 ARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 536 (903)
++...|+.+.+.+.+..+++..- .+..+...+...|.+.|+.++|...|+.. +.+...|..+...|...|+.++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHH
Confidence 88999999999999999887643 24556778889999999999999999886 56788999999999999999999
Q ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhH
Q 002594 537 EEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (903)
Q Consensus 537 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al 612 (903)
+..|++..+. .|+ ...+..+...+...|+.++|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++.
T Consensus 574 ~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 574 VELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999998874 344 45566666789999999999999999884432 34578999999999999999999999986
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh----hc
Q 002594 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID----GD 688 (903)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a----~~ 688 (903)
...|+ +.+|..+-..+...|+.+.|....+++++++|++...+.. .+..|...|+|++|....+.- ..
T Consensus 652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l-------l~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL-------LCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH-------HHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 35565 6788888888899999999999999999999999875443 444556778999998877543 34
Q ss_pred cCCCc
Q 002594 689 IDPLF 693 (903)
Q Consensus 689 ~~p~~ 693 (903)
.+||+
T Consensus 724 k~~g~ 728 (857)
T PLN03077 724 VDPGC 728 (857)
T ss_pred CCCCc
Confidence 45553
No 69
>PLN02789 farnesyltranstransferase
Probab=99.76 E-value=2e-16 Score=167.76 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=198.7
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
+...+++-.+-.++...+.+++|+..+.++++++|.+..+|..++.++..+| ++++++..+.++++.+|++..+|..++
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 3344455444445677889999999999999999999999999999999998 689999999999999999999999999
Q ss_pred HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C
Q 002594 457 QARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---G 531 (903)
Q Consensus 457 ~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g 531 (903)
.++...|+. ++++.++.++++.+|++..+|..++.++...|++++|++++.++++.+|.+..+|+.++.++... |
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 999999874 78899999999999999999999999999999999999999999999999999999999998776 3
Q ss_pred CH----HHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002594 532 EY----KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 532 ~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (903)
.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.++..
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 33 578889999999999999999999999987 4567789999999999999999999999999975
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.75 E-value=4.9e-15 Score=178.34 Aligned_cols=265 Identities=10% Similarity=-0.043 Sum_probs=230.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG 456 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 456 (903)
.+...|..+...|...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 356788899999999999999999999987653 2246788999999999999999999999999876 55677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKK 535 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 535 (903)
..|.+.|++++|...|++..+ .+...|..+...|.+.|+.++|++.|+++.+.. ..+...+..+..++...|..++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999998754 366789999999999999999999999988753 2246678888899999999999
Q ss_pred HHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 536 AEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 536 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
|..+|+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999986432 23567888999999999999999999874 2333 467799999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
+.|++...|..++.+|...|++++|.+.++...+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987755
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-14 Score=144.02 Aligned_cols=305 Identities=16% Similarity=0.103 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002594 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (903)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (903)
+-.+.+|.+.+..-.|++|++.|.+++..+|+....-..+|.||+++.-++-+.+.+.--++..|+.+.+...++....+
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence 44566777888888999999999999999999888888999999999999999999999999999998887777766655
Q ss_pred c--CCHH----------------HHHHHHH----------HHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 462 L--GESV----------------EAIQDLS----------KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 462 ~--g~~~----------------~A~~~~~----------~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 509 (903)
+ |+.. .+...++ -+++.-|. -+++..++...|.++++..+|+..++
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K-- 309 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK-- 309 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh--
Confidence 3 2221 1111111 12222231 36788899999999999999998876
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---D------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (903)
Q Consensus 510 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (903)
.++|..+.-+...|.+....|+--...++++.+-+. - -+.......+|.+++-..++++.+.+++..-..
T Consensus 310 -dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 310 -DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998866655555544332 1 122344566777888888999999999888888
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHH
Q 002594 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (903)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 659 (903)
..++....+++|.+....|+|.+|.+.|-+.-... .+.......+|.||...+..+-|...+-+. + ++.+.+.++
T Consensus 389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~-t~~e~fsLL 464 (557)
T KOG3785|consen 389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---N-TPSERFSLL 464 (557)
T ss_pred hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---C-CchhHHHHH
Confidence 88888899999999999999999999998776555 233455667999999999999999887543 2 333433322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHHHH
Q 002594 660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (903)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w~ 698 (903)
.+ .+...|..+.|--|.+.|+....+||. +++|.
T Consensus 465 ql----IAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe 498 (557)
T KOG3785|consen 465 QL----IANDCYKANEFYYAAKAFDELEILDPT-PENWE 498 (557)
T ss_pred HH----HHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC
Confidence 22 466667778887788888777777887 66664
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=5.6e-15 Score=146.76 Aligned_cols=268 Identities=18% Similarity=0.156 Sum_probs=239.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQA 458 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 458 (903)
-|..|.-++-..+.++|++.|-.+++.+|...++.+.+|..+...|..+.|+..-+..+. .|+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 355677788889999999999999999999999999999999999999999998776654 4543 4578899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCH
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEY 533 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~ 533 (903)
|+..|-++.|...|....+...--..++..+..+|....+|++|++..++..++.+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999876665677899999999999999999999999999987753 4567788888889999
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhH
Q 002594 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (903)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al 612 (903)
+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +.+.-.+..+|..+|+.++.+..+.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 5678889999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
+..+. +++-..++..-....-.+.|..++.+-+...|+-.
T Consensus 277 ~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 277 ETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 98876 56677777777777778999999999999999753
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=5.3e-14 Score=173.62 Aligned_cols=297 Identities=11% Similarity=-0.019 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (903)
.+..+-..+...|++++|.+++..+++... .+..++..+...|.+.|++++|...|++..+ .+...|..+...|..
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 333334467778888888888888887643 3466777788888888888888888887543 345678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002594 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAH 540 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (903)
.|+.++|+..|+++....+.+...+..+-..+...|+.+.+.+.+..+++.. ..+......+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888876544566677777777888888888888888887764 234455667788888999999999888
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc---C
Q 002594 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---D 615 (903)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~ 615 (903)
+.. +.+...|..+...|...|+.++|+.+|++..+. .|+ ..++..+-..+.+.|..++|..+|+...+. .
T Consensus 548 ~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 875 556788888999999999999999999988764 344 445666667788889999999999988743 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHH
Q 002594 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (903)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~ 695 (903)
| +...|..+..++.+.|++++|.+.+++. .+.|+. ..| -..-.++...++.+.+....++..+++|+...
T Consensus 623 P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-~~~-------~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 623 P-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-AVW-------GALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred C-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-HHH-------HHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 4 3578888999999999999999988875 355553 222 11122234457777777777777888888665
Q ss_pred HH
Q 002594 696 YW 697 (903)
Q Consensus 696 ~w 697 (903)
++
T Consensus 693 ~y 694 (857)
T PLN03077 693 YY 694 (857)
T ss_pred hH
Confidence 53
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=2.3e-15 Score=168.70 Aligned_cols=294 Identities=14% Similarity=0.133 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002594 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (903)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (903)
..|..+|..+...+++..|+..|+.+++.+|.+..+|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHH
Q 002594 462 LGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLA 526 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~-p~~~~~~~~la~~ 526 (903)
.|.|.+|+..+...+...... .+.+...+..+...|=+.+|..+++++++. . .++...|..++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 999999999999888765433 445555555555566666666666665543 2 2233333333322
Q ss_pred HHH-----------------------cCCH------HHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------cCCHHH
Q 002594 527 LSS-----------------------IGEY------KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEK 569 (903)
Q Consensus 527 ~~~-----------------------~g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~ 569 (903)
+.- .+.. --|.+++-..+.+.. ++..|+++|.-|+. +.+...
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 211 1111 123333333333322 26678888887765 234458
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 570 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
|+.++.+++.+..++...|..+|.+ ...|++.-|.-+|-+.+...|.....|.++|.++....+++-|...|.++..++
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 9999999999999999999999988 666999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHh
Q 002594 650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684 (903)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 684 (903)
|.+...|...++. ....|+.-+++..|.
T Consensus 881 P~nl~~WlG~Ali-------~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 881 PLNLVQWLGEALI-------PEAVGRIIERLILFA 908 (1238)
T ss_pred chhhHHHHHHHHh-------HHHHHHHHHHHHHHH
Confidence 9998755544443 334454444544443
No 75
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.6e-17 Score=163.31 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=100.1
Q ss_pred hHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHH
Q 002594 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (903)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~l 109 (903)
+....+.+.|.+++++++.++|.+|+..|++||+++ .|+.+|||||.+|.++|.|+.|+++|+.||.+||.+.++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 467788888999999999999999999999999999 7888899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 002594 110 GCAFSALGRKEEALSVWEKGYEHALHQS 137 (903)
Q Consensus 110 G~~~~~lg~~~eA~~~~~~al~~~~~~~ 137 (903)
|.+|+.+|++++|+..|++||++.|+..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999966555554
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=1.8e-15 Score=166.96 Aligned_cols=252 Identities=17% Similarity=0.185 Sum_probs=164.4
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
.......|.-......+|..|..+|+|+.|+..|+.+++. .|.-......+|.+|..++++.+|+..|++|+
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445566777777777888888888888888888888876 23323333335555555555555555555554
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 002594 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------K 514 (903)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p 514 (903)
.+..... | ..+|..+.++.+||.+|...|++++|..++++++++. |
T Consensus 269 ~i~e~~~-------------G-------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 269 TIREEVF-------------G-------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHhc-------------C-------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 3310000 0 0012223344455555555555555555555554432 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Q 002594 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID----- 581 (903)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 581 (903)
.-...+..++.++...+++++|..++++++++. +.-+..+.++|.+|..+|++++|.+++++++.+.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 223445666777777777777777777776652 2336677888888888888888888888888663
Q ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 582 ---KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 582 ---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
+.....+..+|..+.+.+++.+|...|.+++.+ .|+....+.+||.+|..+|++++|+++.++++..
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223456788898899999998888888888765 4455678899999999999999999999888754
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=2.1e-13 Score=147.47 Aligned_cols=433 Identities=14% Similarity=0.094 Sum_probs=309.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~ 120 (903)
+.-+.|..++|.+.++..+..+... .+.....-.|..+..+|+-++|...++.++..||...--+.-+|.++....+|+
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 3457889999999999999999988 444558888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCccccc
Q 002594 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (903)
Q Consensus 121 eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (903)
+|++.|+.||.+.|+. .....++ .-.
T Consensus 93 eaiKcy~nAl~~~~dN--------------~qilrDl-----slL----------------------------------- 118 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDN--------------LQILRDL-----SLL----------------------------------- 118 (700)
T ss_pred HHHHHHHHHHhcCCCc--------------HHHHHHH-----HHH-----------------------------------
Confidence 9999999995544444 3333333 000
Q ss_pred ccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCCc
Q 002594 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (903)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 280 (903)
T Consensus 119 -------------------------------------------------------------------------------- 118 (700)
T KOG1156|consen 119 -------------------------------------------------------------------------------- 118 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhhH
Q 002594 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (903)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 360 (903)
...++.
T Consensus 119 --------------------------------------------------------------------Q~QmRd------ 124 (700)
T KOG1156|consen 119 --------------------------------------------------------------------QIQMRD------ 124 (700)
T ss_pred --------------------------------------------------------------------HHHHHh------
Confidence 000000
Q ss_pred HHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHH
Q 002594 361 EAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PM-----YPEALIGRGTARAFQRELE 432 (903)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~ 432 (903)
.......-...+...|..-..|+..|..+...|++..|..+.+...+.. |. ...+.......+...|.++
T Consensus 125 --~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 125 --YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred --hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 0000111233456678888999999999999999999999998887655 33 2345666777888889989
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 002594 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVK 511 (903)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 511 (903)
+|++.+..--..--+........+.++..++++++|...|...+..+|++...+..+-.++....+--+++ ..|...-+
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 88888776554444555667778999999999999999999999999999988888877776444444455 55555555
Q ss_pred hCCCCHHHHHHHH--------------HHH---HHc-------------CCHHHHHHHHHHHH-------HhC-------
Q 002594 512 LDKENKSAYTYLG--------------LAL---SSI-------------GEYKKAEEAHLKAI-------QLD------- 547 (903)
Q Consensus 512 ~~p~~~~~~~~la--------------~~~---~~~-------------g~~~~A~~~~~~al-------~~~------- 547 (903)
..|..... ..++ .++ +.. .+... ...+++.+ .-.
T Consensus 283 ~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 283 KYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCccc
Confidence 44432110 0000 000 000 11111 11222222 111
Q ss_pred -----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHH
Q 002594 548 -----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (903)
Q Consensus 548 -----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 620 (903)
|.. ...++.++.-+-..|+++.|..+++.|+...|..++.+...|+++...|++++|..++..+-+++-.+.-
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 112 2345678888899999999999999999999999999999999999999999999999999999876655
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH--HHHHHHHhhcHHHHHHHHhhh
Q 002594 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ--KEIALYTASKINSEFCWFDID 686 (903)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~l~~a 686 (903)
+-..-|....+.++.++|.+...+.-+..-+-.......-=.||. -|.+++..+++.+|+.-|...
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 555788888999999999998877655443222212111123444 477888888998888876543
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.9e-14 Score=143.05 Aligned_cols=269 Identities=19% Similarity=0.213 Sum_probs=229.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN 493 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 493 (903)
+..|.-+.-..+.++|+..|..+++.+|...++...+|.++...|..+.|+..-+..+. .|+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 45677777789999999999999999999999999999999999999999998877665 4543 34788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCCHH
Q 002594 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE 568 (903)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 568 (903)
+..|-++.|...|........--..++..+..+|....++++|++..++..++.++. +..++.++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987766667899999999999999999999999999988765 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (903)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (903)
.|+..+.++++.+|+...+-..+|.+....|+|+.|++.++.+++.+|+. +++...|..||..+|+.++....+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 648 LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 648 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
..++..-... .+. ......-.+.|...+..-+.-.|...-+
T Consensus 278 ~~~g~~~~l~-----l~~---lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 278 TNTGADAELM-----LAD---LIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred ccCCccHHHH-----HHH---HHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 9887643221 111 1122233455555555556666665544
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=6.5e-15 Score=162.61 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=124.7
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-- 446 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 446 (903)
.+.-......+|..|...++|.+|+.+|++++.+ +|.-+.++.++|.+|...|++++|..++++|+++..
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 4444555556999999999999999999999975 344567889999999999999999999999987632
Q ss_pred ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 447 ------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--------NSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 447 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 512 (903)
+-...+..++.++...+++++|+.++++++++.- .-+..+.++|.+|..+|++++|.+.+++++.+
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2234456666666666777777777766665421 12345555566666666666666666555554
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 513 D--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------RNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (903)
Q Consensus 513 ~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (903)
. +.....+..+|..+.+.+++.+|...|.++..+. |+....+.+|+.+|..+|+++.|+++.+.+
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 1112344455555555555555555555544431 222334444444444444444444444444
Q ss_pred H
Q 002594 578 L 578 (903)
Q Consensus 578 l 578 (903)
+
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 3
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=1.2e-13 Score=149.26 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=152.1
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--- 445 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 445 (903)
|+...+...|++...+..++....+.++++.....-.+.++..|..-..|...|.++...|++..|....+...+..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555544444332
Q ss_pred CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002594 446 PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (903)
Q Consensus 446 p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 520 (903)
|.. ..+......+....|.+++|++.+..--..--+........+.++.+++++++|...+...+..+|++...+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 211 122333344444445555554444433222222233344455555666666666666666666666655555
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHhCcccHHHHHHHH--------------HH---HHHc-------------CCHHH
Q 002594 521 TYLGLALSSIGEYKKAE-EAHLKAIQLDRNFLEAWGHLT--------------QF---YQDL-------------ANSEK 569 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la--------------~~---~~~~-------------g~~~~ 569 (903)
..+-.++..-.+--+++ ..|...-+..|... +-..++ .+ .... .+..
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~- 334 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE- 334 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh-
Confidence 55555544222222233 33333333332210 000000 00 0000 0100
Q ss_pred HHHHHHHHHh-------hC------------CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHH
Q 002594 570 ALECLQQVLY-------ID------------KRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 570 A~~~~~~al~-------~~------------p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 628 (903)
-...+++.+. -. |.. ...++.++.-+...|+++.|..+++.|+...|..++.+...|.+
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 0112222211 00 111 23466788889999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCc
Q 002594 629 YHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
+...|++++|..+++.+-+++-.|
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchh
Confidence 999999999999999999997543
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.5e-13 Score=152.33 Aligned_cols=312 Identities=12% Similarity=-0.018 Sum_probs=234.9
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (903)
+|+.+..+..+|..+...|+.+.|...+.++.+..|.+ .+..+..|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68889999999999999999999999999998887754 566788899999999999999999999999999988777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 454 RRGQARAALGESVEAIQDLSKAL----EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
. +..+...|++..+.....+++ ...|.....+..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 555555555444444444443 45667777888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCC
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ 600 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~ 600 (903)
.|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ...... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999877432 35668999999999999999999999866662 221111 12222333443
Q ss_pred HHHHHHH---HHHhHccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--cHHHHHHHHHHHHHHHHHHHHh
Q 002594 601 HKKAIKD---LSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQCLAFYQKEIALYTA 673 (903)
Q Consensus 601 ~~eA~~~---~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~~~ 673 (903)
...+..+ ........+ .........+.++...|+.++|...++......-. .............-.+++++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 2222222 111111112 12233346888899999999999999887664422 0111222334556678888999
Q ss_pred hcHHHHHHHHhhhhcc
Q 002594 674 SKINSEFCWFDIDGDI 689 (903)
Q Consensus 674 ~~~~~A~~~l~~a~~~ 689 (903)
|++.+|+..+..+..+
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887754
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-10 Score=121.82 Aligned_cols=433 Identities=15% Similarity=0.099 Sum_probs=328.3
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002594 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (903)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~ 125 (903)
-+++++..|-.+|++|+.-+ .+++++..-|.+=++.+...+|-..+++|+.+-|..-+.++..-..-..+|+...|.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46788999999999999998 88899999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCcccccccccc
Q 002594 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (903)
Q Consensus 126 ~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (903)
|++-++..|+...=+. .+.++ +
T Consensus 164 ferW~~w~P~eqaW~s-fI~fE---------l------------------------------------------------ 185 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLS-FIKFE---------L------------------------------------------------ 185 (677)
T ss_pred HHHHHcCCCcHHHHHH-HHHHH---------H------------------------------------------------
Confidence 9999655554421110 00000 0
Q ss_pred hhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCCcccCCC
Q 002594 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (903)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 285 (903)
T Consensus 186 -------------------------------------------------------------------------------- 185 (677)
T KOG1915|consen 186 -------------------------------------------------------------------------------- 185 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhhHHHHhh
Q 002594 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (903)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (903)
.... . ..
T Consensus 186 -----------------------------------------------------------------Ryke-------i-er 192 (677)
T KOG1915|consen 186 -----------------------------------------------------------------RYKE-------I-ER 192 (677)
T ss_pred -----------------------------------------------------------------HhhH-------H-HH
Confidence 0000 0 00
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
.+-.+++.+-.+ ..+..|+..|..-...|+..-|...|+.+++.-.++. ..+...|..-..+..++.|...|.-|+
T Consensus 193 aR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 193 ARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333333 3377888889999999999999999999998655533 234445555566778999999999999
Q ss_pred HhCCCc--HHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 443 QSNPSA--GEAWKRRGQARAALGES---VEAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 443 ~~~p~~--~~~~~~la~~~~~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 512 (903)
..-|.+ ...+..+...-.+-|+. ++++ --|++.+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 999987 34444444444445653 3333 2467788889999999999999999999999999999999988
Q ss_pred CCCCHH---------HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 513 DKENKS---------AYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVL 578 (903)
Q Consensus 513 ~p~~~~---------~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (903)
-|.... .|.+.+.. -....+.+.+.+.|+.++++-|.. +..|...|....++.+...|.+.+-.++
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 776432 22222221 245788999999999999998864 7788999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHH
Q 002594 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (903)
Q Consensus 579 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 658 (903)
...|.+ ..+-....+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.|...|+-|+....-+......
T Consensus 432 G~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999974 4555566677889999999999999999999999999999999999999999999999998765444332322
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHHHH
Q 002594 659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (903)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w~ 698 (903)
.+..-+. ...+.++.|..+|.+.++..+..+ -|.
T Consensus 511 kaYIdFE-----i~~~E~ekaR~LYerlL~rt~h~k-vWi 544 (677)
T KOG1915|consen 511 KAYIDFE-----IEEGEFEKARALYERLLDRTQHVK-VWI 544 (677)
T ss_pred HHhhhhh-----hhcchHHHHHHHHHHHHHhcccch-HHH
Confidence 2222222 345889999999999998887765 553
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=8e-13 Score=146.47 Aligned_cols=268 Identities=15% Similarity=0.054 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAWKRRG 456 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la 456 (903)
.+..+..|..+...|++++|...++++++.+|++..++.. +..+...|++..+.....+++ ...|....+...+|
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 4445667888999999999999999999999999987775 656655555444444444443 56677778888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGE 532 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~ 532 (903)
.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++ ..+..+|.++...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999887543 346689999999999
Q ss_pred HHHHHHHHHHHHHhCc--ccHHHHH---HHHHHHHHcCCHHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHHHCCCHH
Q 002594 533 YKKAEEAHLKAIQLDR--NFLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p--~~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~ 602 (903)
+++|+..|++++...| ....... .+...+...|....+... + .......+. ........+.++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 9999999999987666 2222111 222233334433333222 1 111111121 2233346788889999999
Q ss_pred HHHHHHHHhHccCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 603 KAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 603 eA~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
+|...++........ ........+.++...|++++|.+.+..++.+.
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999887654322 24677788999999999999999999999875
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.4e-11 Score=132.32 Aligned_cols=282 Identities=15% Similarity=0.076 Sum_probs=189.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPM-------YPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
+.+.+|+.|..+...|+|.+|++.+++++.+ +.+ -..+...++.++..+|+.++|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 5678899999999999999999999999542 111 1245678999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcC---C-HH-HHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 445 NPSAGEAWKRRGQARAALG---E-SV-EAIQDLSKALEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g---~-~~-~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 509 (903)
+|.+.........-+.... + ++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+.....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 9877543322222221111 1 11 12222222211111 12345667777777777777776666555
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hh
Q 002594 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL--------YI 580 (903)
Q Consensus 510 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~ 580 (903)
-...|..............+...+.+|..++....+.+|.. ..+...++.+...+|+++.|+..+...+ +.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 44455544333334444444447899999999999999988 7788889999999999999999998333 22
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG-------IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
. ..+.+-..+-.+++..++-+.|...+..++. -.+..-..+...+....+.|+-++|...+++.++.+|++.
T Consensus 414 ~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 414 K-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred c-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 1 2233444444556666665555555555553 3333345666778888888999999999999999999998
Q ss_pred HHHHHHHHH
Q 002594 654 EKFVLQCLA 662 (903)
Q Consensus 654 ~~~~~~~~~ 662 (903)
+....+..+
T Consensus 493 ~~l~~lV~a 501 (652)
T KOG2376|consen 493 DLLVQLVTA 501 (652)
T ss_pred HHHHHHHHH
Confidence 866554443
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.6e-11 Score=130.16 Aligned_cols=313 Identities=13% Similarity=0.009 Sum_probs=167.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHc
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAAL 462 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 462 (903)
+...|.+++.+|+|++|+.+|+.+++.+.++.+............. -.+ . ..+.....|. ..+.+++.|.++...
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhc
Confidence 4455677777777777777777776654443332222111111000 000 0 1122222222 344455555555555
Q ss_pred CCHHHHHHHHHHHHHhCC--------CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------
Q 002594 463 GESVEAIQDLSKALEFEP--------NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---------- 517 (903)
Q Consensus 463 g~~~~A~~~~~~al~~~p--------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 517 (903)
|+|.+|++.+++++.+.- +. ..+...++.++..+|+.++|...|...++.+|.+.
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNL 268 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNL 268 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcch
Confidence 555555555555532210 00 11344455555555555555555555555444332
Q ss_pred ---------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 002594 518 ---------------------------------------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (903)
Q Consensus 518 ---------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (903)
..+.+.+.+.+..+.-+.+.+...+.-...|....-.....
T Consensus 269 va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~ 348 (652)
T KOG2376|consen 269 VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQE 348 (652)
T ss_pred hhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHH
Confidence 12233344444444444444444433333444322222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhH--------ccCCCCHHHHHHHHHHH
Q 002594 559 QFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL--------GIDPSNIECLYLRASCY 629 (903)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~la~~~ 629 (903)
....+...+.+|...+....+.+|.. ..+...++.+...+|+++.|+..+...+ +.. ..|.+-..+-..+
T Consensus 349 ~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~ 427 (652)
T KOG2376|consen 349 ATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALY 427 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHH
Confidence 33333447888888888888888876 5677888888999999999999988333 221 2244444555566
Q ss_pred HHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHHHHhhc
Q 002594 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (903)
Q Consensus 630 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~w~~r~ 701 (903)
...++.+.|...+.+|+.---.....-..+-..+...+......|+-++|...++....++|+..+.-+...
T Consensus 428 ~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV 499 (652)
T KOG2376|consen 428 YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLV 499 (652)
T ss_pred HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 677776667777776665322111111111122233333345569999999999999999999888865443
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=3e-12 Score=143.65 Aligned_cols=305 Identities=15% Similarity=0.089 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
.+.++..+.++...|++++|+++++.....-.+....+..+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 56778889999999999999999999988889999999999999999999999999999999999999999999988874
Q ss_pred HcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002594 461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA-VEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (903)
Q Consensus 461 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 534 (903)
... +.+.-...|++.....|....+. .+...+..-..|... ..++...+.. .-|.+...+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 333 56777888998888888643322 222222222234333 3344444433 34455555555555433333
Q ss_pred HHHHHHHHHHHh---------------Cccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002594 535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 535 ~A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (903)
-....+...... .|.. ..+++.+|+.|...|++++|+.+++++|+..|..++.|...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222333332211 1111 34668899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH--HHHHHHHHhhc
Q 002594 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY--QKEIALYTASK 675 (903)
Q Consensus 598 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~~ 675 (903)
.|++.+|...++.|-.+++.+--+....+..+.+.|+.++|.+.+......+-+...-....--.|| .-|.++...|+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988888889999999999999999988776554222221222222333 35888899999
Q ss_pred HHHHHHHHhhhhc
Q 002594 676 INSEFCWFDIDGD 688 (903)
Q Consensus 676 ~~~A~~~l~~a~~ 688 (903)
+..|+..|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866544
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=4.1e-13 Score=139.21 Aligned_cols=190 Identities=16% Similarity=0.160 Sum_probs=158.1
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 002594 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-- 450 (903)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 450 (903)
..+..++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456789999999999999999999999999999999876 68899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002594 451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (903)
Q Consensus 451 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 521 (903)
+++.+|.++... |++++|+..+++++..+|++......+..+.... .. ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHH
Confidence 788999999876 7899999999999999998866543332221110 00 012335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002594 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (903)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 582 (903)
.+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78889999999999999999999987654 68999999999999999999999888776655
No 88
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.1e-14 Score=129.72 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=110.9
Q ss_pred hHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh
Q 002594 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (903)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~------~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~ 104 (903)
.-...+.+.+..++.+|..|+|++|..-|+.||+.+|.. .+|.|||.|++++++++.||.+|.+||+++|.|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 335677888899999999999999999999999999443 44889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHH
Q 002594 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~ 151 (903)
|+.+++.+|.++.++++|+..|++.+++.|..-.....+.++.|...
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999888888888888654
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=6e-13 Score=137.92 Aligned_cols=196 Identities=17% Similarity=0.041 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 002594 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---I 485 (903)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 485 (903)
+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34555666666666666666666666666666666543 35566666666666666666666666666665443 4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 002594 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (903)
Q Consensus 486 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 565 (903)
++.+|.++.... +.++...|++++|+..+++++..+|++..++..+..+....
T Consensus 110 ~~~~g~~~~~~~--------------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~- 162 (235)
T TIGR03302 110 YYLRGLSNYNQI--------------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR- 162 (235)
T ss_pred HHHHHHHHHHhc--------------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-
Confidence 555555555430 00011114555555555555555555543332221111100
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 002594 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDY 642 (903)
Q Consensus 566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 642 (903)
.. .......+|.++...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..++
T Consensus 163 ---~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 163 ---NR-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred ---HH-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00 01122356666777777777777777777765543 467777777777777777777766
Q ss_pred HHHHhhcc
Q 002594 643 DAALDLEL 650 (903)
Q Consensus 643 ~~al~l~p 650 (903)
+......|
T Consensus 227 ~~l~~~~~ 234 (235)
T TIGR03302 227 AVLGANYP 234 (235)
T ss_pred HHHHhhCC
Confidence 66655444
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=3.2e-13 Score=127.08 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=98.8
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC
Q 002594 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (903)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 616 (903)
..+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677788888775 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 002594 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (903)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 662 (903)
+++.+++++|.++..+|++++|+..|++++++.|+++..+...+.+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 8888888888888888888888888888888888887765544443
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=4e-12 Score=148.38 Aligned_cols=271 Identities=14% Similarity=-0.000 Sum_probs=201.1
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002594 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (903)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (903)
.+..-.|.+..++..++..+...+++++|+..++.+++.+|+....++.+|.++.+.+++.+|... .++...+.+.
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-- 97 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-- 97 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--
Confidence 345567888999999999999999999999999999999999999999999999999997777666 5555544432
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (903)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 531 (903)
++ .+++++...+...+.+..+++.+|.||-++|++++|...++++++.+|+++.+++++|..|...
T Consensus 98 ------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 98 ------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred ------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 33 4455555555556667777888888888888888888888888888888888888888887777
Q ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--------------------HHHH
Q 002594 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YHLR 591 (903)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~~~l 591 (903)
+.++|+.++.+|+.. +...+++.++..++.+.+..+|.+.+. +.-+
T Consensus 164 dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 164 DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 788888888777754 445567777777777777777665443 2223
Q ss_pred HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHH
Q 002594 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQKEIAL 670 (903)
Q Consensus 592 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~ 670 (903)
=..|...+++++++.+++.+++.+|.+..+...++.||. +.|.. ...|+.++++.. .+.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~----------------- 289 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN----------------- 289 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC-----------------
Confidence 356677788888888888888888888888888888887 44443 555555555431 010
Q ss_pred HHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 671 YTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 671 ~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
...+..++..|++-..+++|.--+
T Consensus 290 --~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 290 --RKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred --CccHHHHHHHHHHHeeecCCCEEE
Confidence 135677888888888888886443
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=4.7e-13 Score=125.91 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002594 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481 (903)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 481 (903)
.+|+++++.+|++ ++.+|.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 3345555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (903)
Q Consensus 482 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (903)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555554443
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=3.9e-13 Score=137.26 Aligned_cols=265 Identities=19% Similarity=0.190 Sum_probs=211.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHH
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGEAWKR 454 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 454 (903)
-.-|.-+++.|++...+.+|+.+++...++. .+|..+|.+|+.+++|++|+++-..-+.+ .-..+.+--+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 3458889999999999999999999887754 56788999999999999999986554432 1223456678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSA 508 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 508 (903)
+|.++...|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999887765432 35689999999998764 3445555555
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 509 CVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 509 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (903)
-+++.... ..++-++|..|+-+|+|+.|+...+.-+.+...+ ..++.++|.++.-+|+++.|+++|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 55543222 2467788899999999999999998888876654 46889999999999999999999999
Q ss_pred HHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 577 VLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 577 al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
.+.+.- ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.+|..+..+|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 875532 2356788999999999999999999998877632 2357899999999999999999999888
Q ss_pred HHhhc
Q 002594 645 ALDLE 649 (903)
Q Consensus 645 al~l~ 649 (903)
.+++.
T Consensus 341 hl~~s 345 (639)
T KOG1130|consen 341 HLRSS 345 (639)
T ss_pred HHHHH
Confidence 87653
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.3e-10 Score=118.18 Aligned_cols=296 Identities=14% Similarity=0.033 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQAR 459 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 459 (903)
+......|..-+..|+|.+|.....+.-+..+...-++..-+.+.-+.|+++.|-.++.++-+..+++ ..+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44456677788889999999999999888888877888888899999999999999999999985544 56788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH--HHHcCC--
Q 002594 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLA--LSSIGE-- 532 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~--~~~~g~-- 532 (903)
...|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..--+.. -+-..+.. +.+..+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999887765433221 11111111 112222
Q ss_pred -HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 002594 533 -YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 533 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 611 (903)
.+.-..+++..-..-..++.....++.-+...|++++|.+..+.+++..-+.. ....++ ....+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHH
Confidence 22222344444444445677888888889999999999999999997755432 222222 23567888888999999
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
+...|+++..+..+|..+.+.+.+.+|..+|+.+++..|+..+ +...|.++.+.|+..+|-..++.++
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~--------~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD--------YAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh--------HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643 4445566666666666666665443
No 95
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=7e-10 Score=115.89 Aligned_cols=326 Identities=14% Similarity=0.128 Sum_probs=272.4
Q ss_pred hHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
.++..++..+..+..+...|...|..-..++++..|...|+++|..+..+...|...+.+-++......|...+.+|+.+
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 34445556666677778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (903)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 524 (903)
-|.-...|+....+-..+|+...|.+.|++-+...| +..+|......-++-+..+.|...|++.+-.+|+ ...|...+
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikya 214 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYA 214 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHH
Confidence 999999999999999999999999999999999999 6678888888888999999999999999998875 67888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCC
Q 002594 525 LALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLG 599 (903)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 599 (903)
..-.+.|...-|...|.+|++...++ ...+...|..-..++.++.|.-+|+-++..-|.+ ...+..+...-.+-|
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 99999999999999999999876554 3345556667778889999999999999998876 344444444444556
Q ss_pred CH---HHHHH-----HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 002594 600 QH---KKAIK-----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671 (903)
Q Consensus 600 ~~---~eA~~-----~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~ 671 (903)
+. ++++. .|+..+..+|.|-++|+.+-.+....|+.+.-.+.|++|+..-|...+-.+..-.+|.....++|
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 54 33432 47788889999999999999999999999999999999999988765554444455555555554
Q ss_pred H---hhcHHHHHHHHhhhhccCCC
Q 002594 672 T---ASKINSEFCWFDIDGDIDPL 692 (903)
Q Consensus 672 ~---~~~~~~A~~~l~~a~~~~p~ 692 (903)
. ..+.+.+...|..++++=|.
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCc
Confidence 3 55677778888888877775
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=4.9e-10 Score=112.81 Aligned_cols=423 Identities=15% Similarity=0.033 Sum_probs=298.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCh--hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQSYEI--QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~ 119 (903)
++..++..+||+-||..++-....+... ..-.=.|.|++.+|+|++|+..|.-+.+-+.-..+....++.|++-+|.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4677999999999999999887766222 33344799999999999999999998887766788999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCcccc
Q 002594 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (903)
Q Consensus 120 ~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (903)
.+|...-.++ |..|....-+..+.-... +. .+
T Consensus 108 ~eA~~~~~ka----~k~pL~~RLlfhlahkln----dE-----k~----------------------------------- 139 (557)
T KOG3785|consen 108 IEAKSIAEKA----PKTPLCIRLLFHLAHKLN----DE-----KR----------------------------------- 139 (557)
T ss_pred HHHHHHHhhC----CCChHHHHHHHHHHHHhC----cH-----HH-----------------------------------
Confidence 9999877776 444322111111100000 00 00
Q ss_pred cccccchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCC
Q 002594 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (903)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 279 (903)
.....+
T Consensus 140 -------~~~fh~------------------------------------------------------------------- 145 (557)
T KOG3785|consen 140 -------ILTFHS------------------------------------------------------------------- 145 (557)
T ss_pred -------HHHHHH-------------------------------------------------------------------
Confidence 000000
Q ss_pred cccCCCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhh
Q 002594 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (903)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 359 (903)
+.....+-...++.+..+-..+.
T Consensus 146 ------------------------------------------------------~LqD~~EdqLSLAsvhYmR~HYQ--- 168 (557)
T KOG3785|consen 146 ------------------------------------------------------SLQDTLEDQLSLASVHYMRMHYQ--- 168 (557)
T ss_pred ------------------------------------------------------HHhhhHHHHHhHHHHHHHHHHHH---
Confidence 00000000111111222222222
Q ss_pred HHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH---
Q 002594 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS--- 436 (903)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--- 436 (903)
...-.+.+++..+|.-...-..+|.+|+...-|+-+.+.+.-.++..|+.+-+...++..+++.=+-..|..
T Consensus 169 -----eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 169 -----EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred -----HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 233366778888888888889999999999999999999999999999999999888887776522222221
Q ss_pred ---------------HHH----------HHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002594 437 ---------------DFT----------EAIQSNPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (903)
Q Consensus 437 ---------------~~~----------~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (903)
.++ -|++.-|. -+++..+++..|..+++..+|+..... ++|..+.-+.
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi 320 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI 320 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH
Confidence 111 12333332 367888999999999999999988764 6899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH---HHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 002594 488 ERGIVNFKFKDFNAAVEDLSAC---VKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (903)
Q Consensus 488 ~la~~~~~~g~~~~A~~~~~~a---l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 558 (903)
..|.++...|+--...++++-+ +++-. +.......+|.+++...++++.+.++...-...-++....+++|
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A 400 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH
Confidence 9999999998765555544433 33221 22234567888888999999999999988888888888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHH
Q 002594 559 QFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637 (903)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 637 (903)
+++...|++.+|.+.|-+.-... .+.......+|.||...+..+-|-..+-+.-. ..+....+..+|......+++--
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765444 23344566799999999999999887754321 12223456677888889999999
Q ss_pred HHHHHHHHHhhccCc
Q 002594 638 AIKDYDAALDLELDS 652 (903)
Q Consensus 638 A~~~~~~al~l~p~~ 652 (903)
|.+.|...-.++|+.
T Consensus 480 aaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 480 AAKAFDELEILDPTP 494 (557)
T ss_pred HHHhhhHHHccCCCc
Confidence 999999888888864
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=2e-10 Score=129.00 Aligned_cols=293 Identities=13% Similarity=0.036 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002594 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (903)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (903)
.+++.+|..+-..|++++|+++++++|+..|..++.|...|.++...|++.+|...++.+-.+++.+--.....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 45577788888888888888888888888888888888888888888888888888888888888888777788888888
Q ss_pred cCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002594 462 LGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 532 (903)
.|+.++|...+..-...+. .. .......|.+|.+.|++..|++.|..+.+......+-.+..=...++.+-
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 8888888888777655441 11 22334567888888888888888887776643322222222222333333
Q ss_pred HHHHHHHHH--HHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH--HHHHHHHHHHHCCCHHHHHHH
Q 002594 533 YKKAEEAHL--KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSK--AYHLRGLLLHGLGQHKKAIKD 607 (903)
Q Consensus 533 ~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~--~~~~la~~~~~~g~~~eA~~~ 607 (903)
+..=+..++ .-+...|....+......+|..+.+-......-..-..... +..+ -......--.....-+++...
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 222222221 12333555566666666666665543322111111000000 0011 011111111111111111111
Q ss_pred HHH-h----------Hc--cCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHh
Q 002594 608 LSS-G----------LG--IDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673 (903)
Q Consensus 608 ~~~-a----------l~--~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 673 (903)
-.+ . -. ..+.+++ -.|.-+.... =.++|.++++-.++..|++.+.+.....++++++..+..+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 100 0 00 0111111 1233333444 4677888888888888888888888888888887766665
Q ss_pred hcHH
Q 002594 674 SKIN 677 (903)
Q Consensus 674 ~~~~ 677 (903)
.-+.
T Consensus 512 qaL~ 515 (517)
T PF12569_consen 512 QALK 515 (517)
T ss_pred HHHH
Confidence 5443
No 98
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.46 E-value=7.6e-13 Score=135.14 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=208.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHH
Q 002594 421 RGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE------PNSADILHERG 490 (903)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la 490 (903)
-|.-+++.|++...+.+|+.|++...++ ..+|..+|.+|..+++|++|+++-..-+.+. -..+..--++|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 4677889999999999999999988776 4568889999999999999998765444321 12344567899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 002594 491 IVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGE--------------------YKKAEEAHLKAI 544 (903)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al 544 (903)
.++-.+|.|++|+.++.+-+.+.. ....+++++|.+|...|+ ++.|.++|..-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776532 235789999999988775 334555555555
Q ss_pred HhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHhH
Q 002594 545 QLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (903)
Q Consensus 545 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al 612 (903)
++.... ..++-+||..|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|++.+
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 443322 3567789999999999999999988877764432 3578899999999999999999999887
Q ss_pred ccC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Q 002594 613 GID----P--SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (903)
Q Consensus 613 ~~~----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 686 (903)
.+. . ..+...|.+|..|.-+.++.+|+.++.+-+.+...-.+ .+-.+.+++.+|.++.+.+..++|+.+..+.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D-riGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED-RIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 652 2 23567889999999999999999999998887654322 4555678899999999999999998877665
Q ss_pred hc
Q 002594 687 GD 688 (903)
Q Consensus 687 ~~ 688 (903)
+.
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 43
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=3.9e-12 Score=126.33 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=108.7
Q ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK 606 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 606 (903)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567788888888889999999999999999998999999999999999999998889998888874 66677 588999
Q ss_pred HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
.++++++.+|+++.+++.+|.++...|++++|+.++++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999988887655
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.1e-11 Score=121.49 Aligned_cols=175 Identities=20% Similarity=0.193 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (903)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 513 (903)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444444455555555 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002594 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (903)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 593 (903)
|++..+|..+|.+|.+.|++++|...|.+++++.|..+.+..|+|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555544445555555555
Q ss_pred HHHHCCCHHHHHHHHH
Q 002594 594 LLHGLGQHKKAIKDLS 609 (903)
Q Consensus 594 ~~~~~g~~~eA~~~~~ 609 (903)
+....|++.+|.....
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 5555555555554433
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3.2e-11 Score=116.68 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002594 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (903)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 530 (903)
.+-....+....|+.+.|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+-..--+...+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 33334444444555555555555555445555555555555555555555555555555555555555544444444555
Q ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 002594 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKD 607 (903)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~ 607 (903)
|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-|+++++-+.|.++..+..+|.+++-+| ++.-|.++
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555554443 33445555
Q ss_pred HHHhHccCCCCHHHHHHHHHH
Q 002594 608 LSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~ 628 (903)
|.++++++|.+..+++.+-.|
T Consensus 214 y~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHhChHhHHHHHHHHHH
Confidence 555555555444444444333
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.2e-10 Score=112.84 Aligned_cols=184 Identities=18% Similarity=0.136 Sum_probs=151.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
.++....+-....+.+..|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445555566677778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EY 533 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~ 533 (903)
.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++-+| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888887766 45
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002594 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (903)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~ 560 (903)
.-|.++|.++++++|.+..+++.+-.+
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 668888888888888777776665444
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=7.8e-10 Score=114.27 Aligned_cols=283 Identities=16% Similarity=0.042 Sum_probs=225.4
Q ss_pred HHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTE 440 (903)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (903)
........+.+..+..+...-.++.-+...-+.|+++.|-.++.++-+..++ .......++.++...|+++.|.....+
T Consensus 99 ~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ 178 (400)
T COG3071 99 DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQ 178 (400)
T ss_pred cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3333444455566677778888899999999999999999999999988444 456788899999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H--HHHHHHHH--HHHcCCHHHH---HHHHHHHHHh
Q 002594 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-D--ILHERGIV--NFKFKDFNAA---VEDLSACVKL 512 (903)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~la~~--~~~~g~~~~A---~~~~~~al~~ 512 (903)
+++..|.++.+......+|...|++.+...++.+.-+..--+. + -+-..+.. +.+..+-..+ ..+++..-..
T Consensus 179 ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~ 258 (400)
T COG3071 179 LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK 258 (400)
T ss_pred HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence 9999999999999999999999999999999988876543222 1 11111111 1222222222 2344444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002594 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (903)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 592 (903)
-.+++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...-++...=++..++.+...|+++..+..+|
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 456678888899999999999999999999998765433 222222 23578899999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
.++.+.+.+.+|..+|+.+++..|+ ...+..+|.++.++|+..+|...+++++.+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999998886 688899999999999999999999999854
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42 E-value=1.8e-11 Score=121.55 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=113.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (903)
-+..|+..|+++......++.. +|.. .+...++.++++..++++++.+|++...|..+|.+|...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456777788777544432221 1211 0112566778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 467 EAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (903)
+|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|++..++..+|.+++..|++++|+.+++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888888888888864 56666 488888888888888888888888888888888888888888888
Q ss_pred HHhCcccH
Q 002594 544 IQLDRNFL 551 (903)
Q Consensus 544 l~~~p~~~ 551 (903)
++..|.+.
T Consensus 171 L~l~~~~~ 178 (198)
T PRK10370 171 LDLNSPRV 178 (198)
T ss_pred HhhCCCCc
Confidence 88777653
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.5e-11 Score=118.95 Aligned_cols=181 Identities=18% Similarity=0.110 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 344667777777889999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHH
Q 002594 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (903)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 624 (903)
...|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 002594 625 RASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al 646 (903)
++.+....|++++|...-.+-+
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 9999999999999998765543
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=3.2e-11 Score=140.86 Aligned_cols=239 Identities=16% Similarity=0.071 Sum_probs=195.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002594 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (903)
Q Consensus 409 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 488 (903)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++.+.+++.++.-. .++...+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 457889999999999999999999999999999999999999999999999999986666554 4444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Q 002594 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (903)
Q Consensus 489 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (903)
...++ .+++++...+...+.+..+++.+|.||..+|+.++|...|+++++.+|+++.++.++|..|... +.+
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 33344 5666666677778888889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHH--------------------HHHHH
Q 002594 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY--------------------LRASC 628 (903)
Q Consensus 569 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--------------------~la~~ 628 (903)
+|+.++.+++.. +...+++.++.+++.+.+..+|++.+.+. -+-.+
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 999999999876 66677899999999999999998765422 23377
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 002594 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682 (903)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 682 (903)
|...+++++++..++.+++.+|++..+...++.+|-.+ |-....+++.+..
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k---Y~~~~~~ee~l~~ 283 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK---YKDHSLLEDYLKM 283 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---ccCcchHHHHHHH
Confidence 88899999999999999999999987665555544422 2223445554443
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.40 E-value=3.5e-11 Score=140.18 Aligned_cols=154 Identities=14% Similarity=-0.008 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (903)
Q Consensus 501 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (903)
+++.-+.......|.++.++..+|.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33444444455578888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 99999999999999999999999999999999888888899999999999999999999999999888766544
No 108
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.36 E-value=3e-12 Score=127.90 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=99.3
Q ss_pred HHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 002594 34 ASAITA-RIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (903)
Q Consensus 34 ~~~~~~-r~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~ 111 (903)
....|+ +.++++||++|.|++||+||+++|..+| |+..+.|||.+|+++++|..|..||+.|+.+|-.|.+||-++|.
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344555 7999999999999999999999999996 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCChHhHHH
Q 002594 112 AFSALGRKEEALSVWEKGYEHALHQSADLKQ 142 (903)
Q Consensus 112 ~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ 142 (903)
+-..+|+..||.+.++.+|++-|...+-.++
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~ 204 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIELKKS 204 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHHHHHH
Confidence 9999999999999999998888875443333
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=1.2e-10 Score=135.76 Aligned_cols=142 Identities=12% Similarity=-0.013 Sum_probs=88.2
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002594 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (903)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 523 (903)
..|++++++.++|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002594 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (903)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 585 (903)
|.++..+|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 66666666666666666666666666666666666666666666666666666665544433
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.8e-09 Score=105.18 Aligned_cols=380 Identities=17% Similarity=0.178 Sum_probs=262.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 002594 45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (903)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~ 123 (903)
++.+...|..||++.+.-.+.+| +-..++.+|.||+...+|..|.+.++..-.+.|...+..+.-++.+.+.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45678889999999999999986 66779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhcccchhcccccCCccccccCCCCCCCcchhhhhcCCCCcccccccc
Q 002594 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (903)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (903)
.+..... +++.-+.+.+++......--.++
T Consensus 99 rV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl---------------------------------------------- 128 (459)
T KOG4340|consen 99 RVAFLLL----DNPALHSRVLQLQAAIKYSEGDL---------------------------------------------- 128 (459)
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHHhcccccC----------------------------------------------
Confidence 8877762 22222333333322221000000
Q ss_pred cchhhhhhhcCCCCCCCCCCCCcccCCCCcCcccccccccCCccccccccCCCCCCCCCcccccCCcccccccCCCcccC
Q 002594 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (903)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 283 (903)
+ |
T Consensus 129 -------------------------~----------g------------------------------------------- 130 (459)
T KOG4340|consen 129 -------------------------P----------G------------------------------------------- 130 (459)
T ss_pred -------------------------c----------c-------------------------------------------
Confidence 0 0
Q ss_pred CCCCCCccCccccccccCCCccccCCCCCCCccccCCCCCccccccccccCCCCCCChhhhhhhhhhhhhhhHHhhHHHH
Q 002594 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (903)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 363 (903)
T Consensus 131 -------------------------------------------------------------------------------- 130 (459)
T KOG4340|consen 131 -------------------------------------------------------------------------------- 130 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHhhccC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 364 RNKKFCVTRISKSK--SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (903)
Q Consensus 364 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (903)
...++... .++++.....|...++.|+|++|+.-|+.+++...-++-.-+++|.++++.++++.|+++....
T Consensus 131 ------~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 131 ------SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ------hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00001111 2446667788999999999999999999999999989999999999999999999999998887
Q ss_pred HHh----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 002594 442 IQS----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILH 487 (903)
Q Consensus 442 l~~----~p~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 487 (903)
++. .|.. .+++...+.++++.++++.|.+.+.. +.|. ++..+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLH 281 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhh
Confidence 754 3321 13466677788899999888876643 3332 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHH
Q 002594 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQ 562 (903)
Q Consensus 488 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 562 (903)
+++..- ..+++.+...-+.-.+.++|-..+.+-++-.+|.+..-++-|...+.+ +|+. ....+.+-..+.
T Consensus 282 N~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLI 356 (459)
T KOG4340|consen 282 NQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALI 356 (459)
T ss_pred HHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHH
Confidence 776543 345677778888888889998888888999999988888887765543 3332 122333333332
Q ss_pred -HcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHH--HC---CCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCH
Q 002594 563 -DLANSEKALECLQQVLYIDKRFSKAYHLR-GLLLH--GL---GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635 (903)
Q Consensus 563 -~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~--~~---g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 635 (903)
..-..++|.+-+...-..-. .-+..+ +.+.. .. .....|++.|+.++++. ..+....+.+|....+|
T Consensus 357 t~qT~pEea~KKL~~La~~l~---~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 357 TCQTAPEEAFKKLDGLAGMLT---EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDY 430 (459)
T ss_pred hCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccc
Confidence 34455666655544322111 101111 11111 11 12334566666666653 45677889999999999
Q ss_pred HHHHHHHHHHHhhccCc
Q 002594 636 REAIKDYDAALDLELDS 652 (903)
Q Consensus 636 ~~A~~~~~~al~l~p~~ 652 (903)
..+.+.|+...+...++
T Consensus 431 ~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 431 PMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHHHhhhccc
Confidence 99999999988876654
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=3.7e-11 Score=132.17 Aligned_cols=223 Identities=17% Similarity=0.143 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002594 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (903)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (903)
.......++..+...|-...|+..|++. ..|-....||...|+..+|.....+-++ .|+++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3445577889999999999999999884 4566788899999999999999988888 666888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (903)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 573 (903)
....-|++|.++.+.. +..+...+|......++|.++..+++..++++|-....|+.+|.+..+.+++..|.++
T Consensus 468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 8777777777777653 3446677788788889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 574 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
|..++.++|++..+|.+++.+|...|+-.+|...+.+|++.+-++..+|.|.-.+....|.+++|++.|.+.+.+..+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999888899999999999999999999999998877543
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=1.9e-11 Score=128.36 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=196.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002594 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (903)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (903)
.+.++..|+|..++..++ ....+|. .......+.+++..+|+++..+..... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 355778899999998777 3233332 345678889999999998877655433 22333455566676665555667
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 467 ~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
.++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665543322 34556677788888899999999998764 567888888999999999999999999999
Q ss_pred HhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHH
Q 002594 545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (903)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 622 (903)
+.+.+..-+....+.+....| ++.+|...|++.....+..+..+..++.++..+|++++|...+.+++..+|++++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 888877666655666666655 699999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHhhccCcHH
Q 002594 623 YLRASCYHAIGEY-REAIKDYDAALDLELDSME 654 (903)
Q Consensus 623 ~~la~~~~~~g~~-~~A~~~~~~al~l~p~~~~ 654 (903)
.+++.+...+|+. +.+.+++.+....+|+++-
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999998 6677888888889998864
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=3.6e-11 Score=132.28 Aligned_cols=236 Identities=17% Similarity=0.145 Sum_probs=203.5
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
.|........+|..++..|-...|+.+|++. ..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 4556677788999999999999999999885 5667788999999999999999999888 677788888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 536 (903)
.+.....-|++|.++.+.. +..+...+|......++|.++.++++..++++|-....|+.+|.+..+.+++..|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7776655555555555433 4557778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC
Q 002594 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (903)
Q Consensus 537 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 616 (903)
..+|.+++.++|++.++|.+++.+|...++-.+|...+.++++.+-++..+|.+.-.+....|.+++|+..|.+.+.+..
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999987632
Q ss_pred --CCHHHHHHHHH
Q 002594 617 --SNIECLYLRAS 627 (903)
Q Consensus 617 --~~~~~~~~la~ 627 (903)
.++.+...+..
T Consensus 619 ~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 619 KYKDDEVLLIIVR 631 (777)
T ss_pred hcccchhhHHHHH
Confidence 23444444433
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.7e-09 Score=135.47 Aligned_cols=311 Identities=13% Similarity=0.010 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--- 448 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 448 (903)
+......+..+...|++++|...+..+....+. .......+|.++...|++++|...+++++...+..
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445567788888999999999999988764321 12445567888899999999999999999865542
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 002594 449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----- 515 (903)
Q Consensus 449 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 515 (903)
..+...+|.++...|++++|...+++++...... ...+..+|.++...|++++|...+++++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 2356778889999999999999999998764321 235677899999999999999999998876321
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 002594 516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584 (903)
Q Consensus 516 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 584 (903)
....+..+|.++...|++++|...+.+++..... ...++..++.++...|++++|...+.++..+.+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1234567888999999999999999998876332 35566778999999999999999999997653321
Q ss_pred HHHH----HHHHHHHHHCCCHHHHHHHHHHhHccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHH
Q 002594 585 SKAY----HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (903)
Q Consensus 585 ~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 656 (903)
.... ......+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++........ .
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~-~ 727 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL-M 727 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc-h
Confidence 1111 1122445568999999999887665433222 22567899999999999999999999987533222 2
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCC
Q 002594 657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (903)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~ 692 (903)
...+.++...|.++...|+.++|...+.+++++...
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 234456677889999999999999999999876543
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4.7e-11 Score=111.86 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=99.2
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC
Q 002594 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (903)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 617 (903)
..+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
++..++.+|.++...|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888888888888888888765
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=1.1e-08 Score=128.04 Aligned_cols=268 Identities=17% Similarity=0.055 Sum_probs=205.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 454 (903)
.+|..+...|++++|...+++++...+... .+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 456778889999999999999998654422 356778889999999999999999998764321 245677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT 521 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 521 (903)
+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999999886321 1234567889999999999999999999876322 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 002594 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL 590 (903)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~ 590 (903)
.+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|...+.......+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 78999999999999999999997764322 11111 122445568999999999877654332222 12567
Q ss_pred HHHHHHHCCCHHHHHHHHHHhHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 591 RGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 591 la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
++.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++.....
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 89999999999999999999987621 2346788899999999999999999999999886543
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.9e-11 Score=124.85 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=105.2
Q ss_pred hHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC----------------ChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 002594 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----------------EIQDICNRAFCYSQLELHKHVIRDCDK 94 (903)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~----------------~~~~~~~ra~~~~~lg~~~~Ai~~~~~ 94 (903)
+.++.+...|..++.+|+.|+|..|+..|++++..-. -..++.|+|.||++++.|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 5788888889999999999999999999999885421 123488999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHH
Q 002594 95 ALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (903)
Q Consensus 95 Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~ 150 (903)
+|.++|++.+|+|++|.+++.+|+++.|+..|++++++.|..-+...+++.+....
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888877666666555443
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.29 E-value=7.8e-11 Score=110.36 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=70.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (903)
Q Consensus 403 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (903)
.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555566666656666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002594 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (903)
Q Consensus 483 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (903)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666655543
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=5.3e-11 Score=118.83 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
++.+-..|.-++..++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|.++|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002594 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 500 (903)
.+|++++|++.|+++++++|++.....+|..+-..+++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988877777666655555444
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=1.2e-06 Score=95.73 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=238.0
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
.-++.++|.+++.|.....+ ..|+..+-+..|.+++. .+|.. ...|...|..|...|+.+.|...|+++.+.
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 44578899999999987655 57899999999999885 45542 467899999999999999999999999987
Q ss_pred CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHH
Q 002594 445 NPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------SADILHERGIVNFKFKDFNAA 502 (903)
Q Consensus 445 ~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A 502 (903)
.-. -..+|...|..-....+++.|+.+.++|...... +..+|..++.+....|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 533 3678999999999999999999999998765221 234677888888899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHH---HHHHcCCHHHHHHHHHHH
Q 002594 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQ---FYQDLANSEKALECLQQV 577 (903)
Q Consensus 503 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~---~~~~~g~~~~A~~~~~~a 577 (903)
...|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.+ .-.+.|...-. .-+..-+.+.|..+|+++
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999998864 44555554332 223345789999999999
Q ss_pred HhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhcc
Q 002594 578 LYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA-----IGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 578 l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~l~p 650 (903)
++..|.. -..+...+.+-..-|-...|+..|++|-..-+. .-.+.+-.+|.. .| ...-...|++|++.-|
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLP 653 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCC
Confidence 9988732 235666777878889999999999998765432 222222222221 22 2345678999999988
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhcc-CCC-cHHHH
Q 002594 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI-DPL-FKEYW 697 (903)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~-~p~-~~~~w 697 (903)
+....- ....-+...-..|..+.|...|.-+.++ +|. ..++|
T Consensus 654 ~~~~r~-----mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 654 DSKARE-----MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred hHHHHH-----HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 764311 1223344456778999998888666554 332 44555
No 121
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=4.2e-08 Score=106.63 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=156.3
Q ss_pred cCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcC
Q 002594 496 FKDFNAAVEDLSACVKL-DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----NFLEAWGHLTQFYQDLA 565 (903)
Q Consensus 496 ~g~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g 565 (903)
.|+..+-+..|.+|++. +|.- ...|..+|..|...|+.+.|...|+++.+..- +-..+|...|..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 45566666667666653 4432 36788999999999999999999999988643 23688999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHH
Q 002594 566 NSEKALECLQQVLYIDKR------------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (903)
Q Consensus 566 ~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 627 (903)
+++.|+.+++++...-.. ...+|..++......|-++.....|++.+.+.--.|..-.+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999998754211 23457778888888999999999999999998888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCC
Q 002594 628 CYHAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (903)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~ 692 (903)
.+....-+++|.+.|++.+.+.+ .-.+.| ..|..+....|...+.+.|..+|+++++..|.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW----~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIW----NTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999874 334434 45666777778888999999999999998773
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.22 E-value=5.2e-10 Score=102.82 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=100.7
Q ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHH
Q 002594 543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (903)
Q Consensus 543 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 621 (903)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|+++|.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 44566 77788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
++++|.|+...|+.+.|.+.|+.++....+.++
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999999999988754443
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=5.4e-10 Score=102.71 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=96.6
Q ss_pred HHHhhccC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002594 370 VTRISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 370 ~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
+..+.... +...+..+..|..++..|++++|...|+-+...+|.++..|+++|.++..+|++.+|+..|.+++.++|++
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 33445555 67788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 480 (903)
+..+.++|.|+...|+.+.|++.|+.++....
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999888763
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3e-09 Score=104.97 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=94.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (903)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 471 (903)
.+..+|..|++++..-.+..|.+...+..+|.||+...++..|..+|++.-.+.|.........++.+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44555666666666666666665666666666666666666666666666666666655555566666666666666555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 002594 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (903)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 551 (903)
.........-...+...-+.+.+..+++..+....++.- ..+......+.|.+.++.|++++|++-|+.+++...-.+
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 544332111111222223333334444444333332211 012334445555555555555555555555555554445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQVL 578 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al 578 (903)
-.-++++.++++.++++.|+++..+.+
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555555555555555555555444443
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.20 E-value=2.4e-10 Score=124.71 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 002594 39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (903)
Q Consensus 39 ~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg 117 (903)
.+.++..+|..|+|++|+.+|+++|+++ .++..++++|.+|+.+|++++|+.++++||.++|++..+|+++|.+++.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 4567888999999999999999999999 666779999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHhHHHHHHHHHHH
Q 002594 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (903)
Q Consensus 118 ~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~ 150 (903)
++++|+..|++++.+.|..+.....+..+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887665555554333
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=6.7e-09 Score=110.40 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002594 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (903)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (903)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++.+.|+.+.+..++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH
Q 002594 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (903)
Q Consensus 492 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 571 (903)
.+++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|...+. ..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHH
Confidence 88888888888888888888888888888888888888888777665443 4455678888888
Q ss_pred HHHHHHHhhC
Q 002594 572 ECLQQVLYID 581 (903)
Q Consensus 572 ~~~~~al~~~ 581 (903)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 8888877665
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=9.6e-09 Score=109.25 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 002594 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (903)
Q Consensus 480 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (903)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44455555555555555666666665555555556555555555566666666666666666666666555555555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (903)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (903)
+|.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.. ..+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 66666666666666665555556555566666655555555444433 2334444455555555
Q ss_pred HHHHHHHhhc
Q 002594 640 KDYDAALDLE 649 (903)
Q Consensus 640 ~~~~~al~l~ 649 (903)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 5555555544
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=7.1e-10 Score=116.54 Aligned_cols=235 Identities=16% Similarity=0.068 Sum_probs=182.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--PSAGEAWKRRG 456 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 456 (903)
...+..+.+.++++.+|+++..+.-... ..+....+...++..+...++.+.++..+...+... +.++......|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 4466677888899999999877655433 223334566666766655556677777666554332 23455667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYK 534 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~ 534 (903)
.++...|++++|+..+.+. .+.++......+++.+++++.|.+.++.+.+.+.+..-.....+++....| .+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 8888899999999988764 578888889999999999999999999999888877666666677777766 589
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHhHc
Q 002594 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLG 613 (903)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~ 613 (903)
+|...|++..+..+.++..+..++.++..+|++++|...+.+++..+|.+++++.+++.+...+|+. +.+.+++.+...
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999988888888999999999999999999999999999999999999999999999999998 667778888888
Q ss_pred cCCCCHHH
Q 002594 614 IDPSNIEC 621 (903)
Q Consensus 614 ~~p~~~~~ 621 (903)
.+|+++.+
T Consensus 265 ~~p~h~~~ 272 (290)
T PF04733_consen 265 SNPNHPLV 272 (290)
T ss_dssp HTTTSHHH
T ss_pred hCCCChHH
Confidence 89987643
No 129
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-10 Score=111.89 Aligned_cols=103 Identities=26% Similarity=0.327 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCChh-HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 002594 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (903)
Q Consensus 35 ~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~ 113 (903)
.+......++++|..+.|..||.+|.++|.++|+.. +|.|||.||+++.+|+.+..+|++|++++|+.+++++.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 334445889999999999999999999999997774 5679999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCh
Q 002594 114 SALGRKEEALSVWEKGYEHALHQS 137 (903)
Q Consensus 114 ~~lg~~~eA~~~~~~al~~~~~~~ 137 (903)
+....+++|+.++++|+.+..+++
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCC
Confidence 999999999999999977654443
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=3e-08 Score=101.73 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=67.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (903)
.++..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467778888888888889999999998888888887654 4888888888888888888888888888876 4567
Q ss_pred HHHHHHHHHc
Q 002594 453 KRRGQARAAL 462 (903)
Q Consensus 453 ~~la~~~~~~ 462 (903)
+.+|.++...
T Consensus 110 Y~~g~~~~~~ 119 (243)
T PRK10866 110 YMRGLTNMAL 119 (243)
T ss_pred HHHHHhhhhc
Confidence 7777765444
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.09 E-value=2e-09 Score=117.59 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (903)
+...|..++..|+|++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (903)
++++|+..|++++.++|++..+...++.+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777666666555555433
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=4.9e-10 Score=94.86 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHHHHHhccC---ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 002594 49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (903)
Q Consensus 49 ~~~y~~Ai~~y~~ai~~~~---~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~ 125 (903)
+|+|++|+.+|+++++..| +...++.+|.||+++|+|++|+..+++ ++.+|.++..++.+|.|++++|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999996 345577899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 002594 126 WEKG 129 (903)
Q Consensus 126 ~~~a 129 (903)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 133
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.02 E-value=1.5e-06 Score=89.24 Aligned_cols=223 Identities=32% Similarity=0.408 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE 504 (903)
Q Consensus 429 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 504 (903)
+.+..+...+..++...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555555554 255555666666666666666666666665 455556666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (903)
Q Consensus 505 ~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (903)
.+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666666555444444444 67777777777777777766555 34555555566667777788888888888777
Q ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 581 ~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
.+. ....+..++..+...+.+.+|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777 57777788888888888888888888888887776677777777777777788888888888888876
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=3.9e-08 Score=98.62 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=118.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (903)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.+...|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 347789999999999999999999999999998874 5789999999999999999999999999999886 4678
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002594 453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (903)
Q Consensus 453 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (903)
+.+|.++.... ...+|+..|+..+...|++..+- ..+..+- ..+ ..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------------~~l------a~ 142 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------------NRL------AE 142 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------------HHH------HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------------HHH------HH
Confidence 88888876543 23477888888888888763221 1111110 000 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHH
Q 002594 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA 570 (903)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 570 (903)
--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++.+|..+|..+.|
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 22456677777777777777777777777665 45666677777777776643
No 135
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.2e-09 Score=107.82 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=96.9
Q ss_pred HHhhccccchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCh----hHHhhHHHHHHHhhcHHHHHHHHHH
Q 002594 20 ICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEI----QDICNRAFCYSQLELHKHVIRDCDK 94 (903)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~----~~~~~ra~~~~~lg~~~~Ai~~~~~ 94 (903)
|.++.-...=.+....+..-|..||.+|+.++|..|+..|++.|... +++ .+|.|||.|.+-+|+|..|+.||.+
T Consensus 65 LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 65 LQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445567777899999999999999999999999886 333 4499999999999999999999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 95 ALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (903)
Q Consensus 95 Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~ 132 (903)
|++++|+++++|++=+.|++.+.++.+|+..-+..+.+
T Consensus 145 al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 145 ALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999998888433
No 136
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=1.6e-06 Score=89.06 Aligned_cols=224 Identities=29% Similarity=0.351 Sum_probs=197.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002594 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (903)
Q Consensus 394 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 469 (903)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888888876 478888999999999999999999999987 68888899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (903)
..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877555666666 89999999999999999988776 3556667777778889999999999999999
Q ss_pred hCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC
Q 002594 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (903)
Q Consensus 546 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 617 (903)
..+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 69999999999999999999999999999999987777888888888888899999999999999887
No 137
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.98 E-value=9.9e-08 Score=97.95 Aligned_cols=182 Identities=15% Similarity=0.052 Sum_probs=130.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 002594 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAY 520 (903)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 520 (903)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356677788888888888888888888888888877544 47888888888888888888888888887764 567
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002594 521 TYLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (903)
Q Consensus 521 ~~la~~~~~~g~------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 582 (903)
+.+|.++...++ ..+|+..|++.++..|+...+ .+|...+..+- .
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---D 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---H
Confidence 777777655431 245667777777777776321 11111111110 0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
....--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011223457888889999999999999999888875 578889999999999999988766543
No 138
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.95 E-value=6e-10 Score=111.73 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (903)
+-..|..|+.+|.|++|+.+|.+.+..+|.++..+.++|.+|+....+..|...++.|+.++.....+|.+.+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (903)
...+|.+.++.++.+.|++.++...++.+-. ..++ +-+.+..|.... |.+-..++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~-----------------A~Q~~~Q~ 234 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTP-----------------ARQGMIQI 234 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCc-----------------cccchhhh
Confidence 9999999999999999997766555444322 1111 111122222111 11111122
Q ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHH
Q 002594 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (903)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 623 (903)
+.+ ..-|..+...|.++.++.++...+....++...-.+ +..+.+.-++++|+....+++..+|.......
T Consensus 235 l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s 305 (536)
T KOG4648|consen 235 LPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS 305 (536)
T ss_pred ccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence 210 011233444455555555555544433333222222 44455555666666666666666655444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 624 LRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
..+.+-.-+|...++...++.++.+.|.+..
T Consensus 306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 4455555556666777777777777776554
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=3.1e-09 Score=86.21 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=62.0
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 002594 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (903)
Q Consensus 68 ~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg-~~~eA~~~~~~al~~~~ 134 (903)
++..+.++|.+++..|+|++|+..|.+||+++|+++.+++.+|.++..+| ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678999999999999999999999999999999999999999999999 79999999999966654
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=7.7e-08 Score=91.03 Aligned_cols=198 Identities=19% Similarity=0.139 Sum_probs=138.3
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (903)
..+..++.+|..|-..|-..-|...|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (903)
+..-|++.-|.+.+.+-.+.+|++|---..+-. ....-++.+|...+.+-.+...+....|+..+ +.+|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HH
Confidence 999999999999999999999988742222111 12233566666554433222222222222211 12222221 22
Q ss_pred HHHHHHHhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002594 539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (903)
Q Consensus 539 ~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (903)
.++++..-..++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 233333322222 4566777777777777777777777766543
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.94 E-value=2.3e-07 Score=94.36 Aligned_cols=271 Identities=15% Similarity=0.194 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA 451 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 451 (903)
+......|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+....+ ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999999999987654433 34445567788889998887765554443221 2467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHH
Q 002594 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520 (903)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~ 520 (903)
+.+++..+....++.+++.+-.-.+.+.... ......++..+.-++.++++++.|+.+++...++. .++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 8899999999999999999988888764433 35677799999999999999999999998854432 567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCC
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF 584 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~ 584 (903)
..+|..+....++++|..+..++.++.... .-+++.++..+..+|..-.|.++.+++.++. +-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 889999999999999999999998875432 4567889999999999999999999998763 223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhhccC
Q 002594 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELD 651 (903)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~l~p~ 651 (903)
.....-+|.+|...|+.+.|..-|+.|+..-.. ..+++...|.++....-..+ |++.-.+++++...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 455677899999999999999999999865221 24566667777665544444 88888888887644
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.94 E-value=1.3e-07 Score=94.81 Aligned_cols=176 Identities=21% Similarity=0.168 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002594 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILH 487 (903)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 487 (903)
.+..++..|..++..|++.+|+..|++++...|.. ..+.+.+|.++...|+++.|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46778888889999999999999999998887764 5788888999999999999999999999888876 45777
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 002594 488 ERGIVNFKFK-----------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (903)
Q Consensus 488 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 556 (903)
.+|.+++... ...+|+..|+..+...|++..+ .+|...+..+ ...-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l---~~~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAEL---RNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHH---HHHHHHHHHH
Confidence 7777766542 2346777777777777765432 1222111111 1111233456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHH
Q 002594 557 LTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQHKKAIK 606 (903)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~ 606 (903)
+|..|.+.|.+..|+..++.+++..|+.. .++..++.++..+|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 88999999999999999999999999874 578899999999999885543
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3.2e-08 Score=90.17 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR 454 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 454 (903)
++.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3556777777777777777777777777777665 4567777777777777777777777777776664 456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (903)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777777766543
No 144
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.89 E-value=1.9e-09 Score=114.60 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 002594 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (903)
Q Consensus 37 ~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~ 115 (903)
....-+++.+|.-++|+.|+..|++||+++| ....+.+||.++++.+++..|+.|+.+||+++|.+.++|+++|.+..+
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 3344678889999999999999999999995 556688999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 002594 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (903)
Q Consensus 116 lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~ 152 (903)
++++-+|+..|++...+.|+.+...+.+-+++-....
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888887777765554
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=98.88 E-value=1e-07 Score=102.36 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 002594 383 FRLSRGIAQVNEGK---YASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS 447 (903)
Q Consensus 383 ~~~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 447 (903)
.++.+|...+..+. .+.|+.+|.+++ +.+|+.+.+|..+|.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 34777777766653 567888899999 88899999999998888765 2345677777788888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 002594 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (903)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 526 (903)
++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888765544433333
Q ss_pred HHHcCCHHHHHHHHHH
Q 002594 527 LSSIGEYKKAEEAHLK 542 (903)
Q Consensus 527 ~~~~g~~~~A~~~~~~ 542 (903)
.+-....++|+..|-+
T Consensus 417 ~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 417 MYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHcCCchhhhHHHHhh
Confidence 3444556666666654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=3.7e-08 Score=89.71 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHHHHHH
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLR 625 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 625 (903)
..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+.+|+.++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777888888888888888888888777765 4677778888888888888888888888877764 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
|.++..+|++++|..+++++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 88888888888888888888888887754
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.87 E-value=6.7e-08 Score=102.46 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC------CHHH
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKR------FSKA 587 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~ 587 (903)
...+.++... ++++|+.+|++++.+.-.. ..++..+|.+|... |++++|+++|+++++.... ....
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 3344444443 6666666666666653211 45667788888888 8999999999999876331 1346
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHccCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHH
Q 002594 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (903)
Q Consensus 588 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~ 660 (903)
+..+|.++...|+|++|+..|++.....-++ ...++..+.|+...|++..|...+++....+|......-...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 7788999999999999999999987653221 245667888999999999999999999999886544322222
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHhhhhccC
Q 002594 661 LAFYQKEIALYTASKINSEFCWFDIDGDID 690 (903)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 690 (903)
+.-.-.+.--.....|..++..|+....+|
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 222222222233445666766666555444
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.86 E-value=8.7e-08 Score=93.62 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=84.3
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002594 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (903)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (903)
..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+.+++...|.+..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 344556777888888888888888888888888766553 35677777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (903)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (903)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777777777776665555544432 2455666666666666654
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.3e-08 Score=97.58 Aligned_cols=119 Identities=26% Similarity=0.311 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSA 508 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 508 (903)
+..+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++... .-.++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555555555555544432 23445555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 002594 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (903)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (903)
++..+|.+..+...+|..++..|+|.+|...++..++..|.+
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555555555555555555555555555555555554443
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=1.2e-06 Score=103.13 Aligned_cols=218 Identities=13% Similarity=0.045 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCc----HHHHHHHHHHHHHcCCHHHHHHH
Q 002594 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ-SNPSA----GEAWKRRGQARAALGESVEAIQD 471 (903)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 471 (903)
-.+..+.|++.+..+|+..-.|......+.+.++.++|.+.+++|+. +++.. ...|..+-.+...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34455667788888888888888888888888888888888888885 34433 23444444445555667777788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 002594 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-- 549 (903)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 549 (903)
|++|.+... ...++..|..+|...+++++|.++|+..++........|..+|..++.+++-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 888887654 34577788888888888888888888888888877888888888888888888888888888888887
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
+.+.....|.+-++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+-+...|++++.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 677777888888888888888888888888888888888888888888888888888888888764
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.85 E-value=8.9e-08 Score=108.80 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Q 002594 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~ 602 (903)
...|+.+|+++++++|++..++..++.++... .+...+.....+++.. +|..+.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45566666666666666666665555544332 1234555666665553 6777888999999999999999
Q ss_pred HHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHH
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
+|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++..+.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 99999999999999 4889999999999999999999999999999999887443
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.85 E-value=1.7e-07 Score=106.60 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCC
Q 002594 381 VDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQR--------ELEAAISDFTEAIQS--NPS 447 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~ 447 (903)
+..++..|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.+ +|.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3444667777766554 677888888888888888877777777665432 123333444443332 444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002594 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (903)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 517 (903)
++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 455555555555555555555555555555555 345555555555555555555555555555555554
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.84 E-value=2e-07 Score=90.99 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (903)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 490 (903)
.+.+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 44556666666666677777777777666655442 345666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 002594 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (903)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (903)
.++...|+...+...+..++. .+++|+.++++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 666666665555544444332 1455556666666655554
No 154
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=5.4e-07 Score=85.45 Aligned_cols=195 Identities=22% Similarity=0.204 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
..++..|..|-..|-..-|.-.|.+++.+.|+.++++..+|..+...|+|+.|.+.|...++++|.+..+..+.|..++.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34455555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
-|++.-|.+-+.+..+.+|++|.--..+-.. ...-+..+|...+.+-.+...+....++..+. .+|+..+ ...++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~-e~l~~ 220 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE-ETLME 220 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH-HHHHH
Confidence 6666666666666666666654321111111 11233444443333222222212222222221 1222211 12223
Q ss_pred HhHccCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 610 SGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 610 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
++.+...++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 333222222 3677888888888888888888888777653
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=8.7e-08 Score=101.61 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=122.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C----CHHHHHHH
Q 002594 524 GLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--R----FSKAYHLR 591 (903)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~l 591 (903)
|.+|...+++++|..+|.++...... -...+...+.++... ++++|+.+|++++.+.- . -...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555556666666666665544221 134455556666555 99999999999987632 1 24578889
Q ss_pred HHHHHHC-CCHHHHHHHHHHhHccCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 002594 592 GLLLHGL-GQHKKAIKDLSSGLGIDPS--N----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (903)
Q Consensus 592 a~~~~~~-g~~~eA~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 664 (903)
|.+|... |++++|+++|++|++.... . ..++..+|.++..+|+|++|++.|+++....-++....+.....++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 9999998 9999999999999987321 2 4678899999999999999999999998865444332333334566
Q ss_pred HHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 665 QKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 665 ~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
..++++...++...|...|+.....+|+|...
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 77888889999999999999999999988644
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.3e-08 Score=82.59 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 002594 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL 650 (903)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~l~p 650 (903)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777776
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-07 Score=96.46 Aligned_cols=122 Identities=23% Similarity=0.203 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Q 002594 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLS 609 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~ 609 (903)
.+..+.-++.-+..+|++.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444455555566666666666666666666666666666666666666666666666666655432 3456666677
Q ss_pred HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
+++..+|.+..+.+.||..++..|+|.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777777777777777777777777777777777777666665543
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.82 E-value=2.1e-07 Score=87.94 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRG 456 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 456 (903)
..+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+...++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34445555556788888877888888888777 4566777888888888888888888888776554 34667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 510 (903)
.++...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888888888877552 2333345666777777777777777777777653
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.81 E-value=4.6e-08 Score=84.44 Aligned_cols=98 Identities=30% Similarity=0.486 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHc
Q 002594 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (903)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (903)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566666667777777777777777777766666777777777777777777777777777777667777777777777
Q ss_pred CCHHHHHHHHHHHHhhcc
Q 002594 633 GEYREAIKDYDAALDLEL 650 (903)
Q Consensus 633 g~~~~A~~~~~~al~l~p 650 (903)
|++++|...+.++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766655
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.81 E-value=2.7e-07 Score=99.17 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 002594 419 IGRGTARAFQRE---LEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA 483 (903)
Q Consensus 419 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 483 (903)
+..|...+..+. .+.|+.+|.+++ .++|+.+.++..++.++... .+..+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655543 466888888888 88888888888888887654 234566667777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH-HH
Q 002594 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ 562 (903)
Q Consensus 484 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 562 (903)
.++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777653332222222 22
Q ss_pred HcCCHHHHHHHHHH
Q 002594 563 DLANSEKALECLQQ 576 (903)
Q Consensus 563 ~~g~~~~A~~~~~~ 576 (903)
-....++|+.+|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 23444555555543
No 161
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.80 E-value=6.5e-07 Score=91.12 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHH
Q 002594 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADIL 486 (903)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 486 (903)
.-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+---.+...-+ ..+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888899999999999988754443 234445667788888888887765444433211 24578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHH
Q 002594 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWG 555 (903)
Q Consensus 487 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 555 (903)
.+++..+.+..++.+++.+.+..+.+....+ .+...++.++..++.++++++.|+.+++...++ ..++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 8999999999999999999998887754332 567779999999999999999999999886544 35778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHhHccC------CCCH
Q 002594 556 HLTQFYQDLANSEKALECLQQVLYIDKRF----------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID------PSNI 619 (903)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~ 619 (903)
.+|.++....++++|+-+..++.++.... ..+++.++..+..+|+.-.|.++.+++.++. +-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999999998764321 3457788999999999999999999998762 2235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
....-+|.+|...|+.+.|..-|+.|...-..
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 67788999999999999999999999876543
No 162
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=9.9e-07 Score=103.90 Aligned_cols=219 Identities=13% Similarity=0.086 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 002594 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS----ADILHERGIVNFKFKDFNAAVED 505 (903)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 505 (903)
-.+..+.|++.+..+|+....|..+-..+.+.++.++|.+.+++|+.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344667889999999999999999999999999999999999999974 4433 23555555555556777778888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q 002594 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-- 583 (903)
Q Consensus 506 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 583 (903)
|++|.+... ...++..|..+|...+++++|.++|+..++...+....|..++..++...+-+.|...+.+|+..-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 998887652 35688899999999999999999999999999989999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002594 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 650 (903)
+.......|.+.++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.-
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7788889999999999999999999999999999999999999999999999999999999998763
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=8.3e-08 Score=82.80 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (903)
++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555555556666666666666666555555555556666666566666666666655555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCC
Q 002594 464 ESVEAIQDLSKALEFEP 480 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p 480 (903)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555555444
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.77 E-value=1.7e-07 Score=86.75 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=100.2
Q ss_pred chhhhhhHHhhccccchhhHhHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHH
Q 002594 13 LNKTHKTICEIDELVRVDSVMASAITAR-IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIR 90 (903)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~ 90 (903)
.+.+.+.|.....+..+..+.......= ..+-.+|.+|+|++|..+|.-....+ .++..+..+|.|+..+|+|++|+.
T Consensus 13 ~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~ 92 (165)
T PRK15331 13 AEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACD 92 (165)
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666654444333 34456899999999999999988888 778888999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (903)
Q Consensus 91 ~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~ 131 (903)
.|..|..++++++...+..|.||+.+|+.++|+..|+.+++
T Consensus 93 ~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 93 LYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999976
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=1.4e-07 Score=91.78 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002594 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (903)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 596 (903)
++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444444444444444444444444443321 2244444444444444444444444444444444444444444444
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=1.6e-07 Score=91.42 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 002594 395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI 469 (903)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 469 (903)
..|..+...+...++..+.. ..+++.+|.++...|++++|+..|.+++.+.|+. +.++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33445555554444444333 4455666666666666666666666666665442 345666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 470 QDLSKALEFEPNSADILHERGIVNF 494 (903)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~ 494 (903)
.++++++.+.|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 6666666666666666666666665
No 167
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.76 E-value=3.9e-07 Score=86.12 Aligned_cols=117 Identities=22% Similarity=0.121 Sum_probs=79.6
Q ss_pred HcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHH
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 602 (903)
..++...+...++..+...|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666766677777777666 4556667777777777777777777777665443 345666777777777777
Q ss_pred HHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (903)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777552 3333445667777777777777777777777663
No 168
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=90.99 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------------------CChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 002594 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-------------------YEIQDICNRAFCYSQLELHKHVIRDCDKA 95 (903)
Q Consensus 35 ~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-------------------~~~~~~~~ra~~~~~lg~~~~Ai~~~~~A 95 (903)
...-.|.++|.+|..|+|.+|+..|..||..- ...+++.|.+.|++..|+|-+++..|..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 33345788999999999999999999998531 12244789999999999999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHH
Q 002594 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (903)
Q Consensus 96 l~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~ 141 (903)
|..+|++.+||+++|.++..-=+.++|..+|.++|++.|.-...+.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999777766554433
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=3.1e-08 Score=79.18 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=58.3
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 002594 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (903)
Q Consensus 73 ~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~ 137 (903)
+.+|..+++.|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|++++++.|+.|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999987777653
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=8.2e-06 Score=80.43 Aligned_cols=256 Identities=15% Similarity=0.038 Sum_probs=189.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 002594 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (903)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 467 (903)
.+-++..|+|..++..-.+.-... ........+.+.|..+|++...+......- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345677899999988777664433 677788888999999998876555443322 1223445556665555566555
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 468 AIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 468 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (903)
-+.-+.+.+... ..+......-|.++...|++++|++..... .+.++...--.++.++.+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555544444332 223345666688899999999999988763 3455666667888899999999999999988
Q ss_pred hCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHH
Q 002594 546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (903)
Q Consensus 546 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 621 (903)
++.+. .+..||..+.. .+++.+|.-+|+..-+..|..+.....++.++..+|+|++|...++.++..+++++++
T Consensus 166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 87653 34445544443 3568899999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHhhccCcHH
Q 002594 622 LYLRASCYHAIGEYREAIKD-YDAALDLELDSME 654 (903)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~-~~~al~l~p~~~~ 654 (903)
+.++-.+-...|...++..- +.+....+|+++-
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999999999988776654 4556666777653
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=1.8e-05 Score=90.12 Aligned_cols=226 Identities=15% Similarity=0.039 Sum_probs=168.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002594 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (903)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (903)
....+++.+|+..+.+.++..|+...+....|..+.++|..++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678899999999999999999999999999999999999999988877777777888888889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHH---------HHHHHH
Q 002594 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIGEYK---------KAEEAH 540 (903)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~---------~A~~~~ 540 (903)
+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++.. |..+..++......+ -|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999997 8888888888999888887777766677778887644 333444443333322 344555
Q ss_pred HHHHHhC-ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 541 LKAIQLD-RNF--LEAWGHLTQFYQDLANSEKALECLQQVL-YID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 541 ~~al~~~-p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
++.++.. +-. .++ ...-.++..+|++++|.+.+..-+ +.. +.+...-......+...+++.+-.+...+++...
T Consensus 178 ~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6666555 211 222 223345667889999999884333 333 3334444556677788899999999999999888
Q ss_pred CCC
Q 002594 616 PSN 618 (903)
Q Consensus 616 p~~ 618 (903)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 887
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.73 E-value=2.1e-07 Score=86.06 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=100.8
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002594 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (903)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (903)
+..+....+...+..+..|..++..|++++|..+|+-+.-.+|.+++.+..+|.++..+++|++|+..|..+..++++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 34445566677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (903)
...+..|.|+..+|+.+.|+.+|+.++. .|.+.
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999999988 45443
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=3.7e-08 Score=83.33 Aligned_cols=81 Identities=32% Similarity=0.423 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 564 LANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (903)
Q Consensus 564 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 641 (903)
.|+++.|+.++++++...|. +...++.+|.+++..|++++|+..+++ ...+|.++.+.+.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666663 344555566666666666666666666 555665566666666666666666666666
Q ss_pred HHHH
Q 002594 642 YDAA 645 (903)
Q Consensus 642 ~~~a 645 (903)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.9e-07 Score=97.85 Aligned_cols=147 Identities=27% Similarity=0.273 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Q 002594 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (903)
Q Consensus 485 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 564 (903)
.....|..|++.|+|..|...|++++..-..... -+.++..... ++ -..++.+++.++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~~ee~~~~~--~~-----k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FDEEEQKKAE--AL-----KLACHLNLAACYLKL 270 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CCHHHHHHHH--HH-----HHHHhhHHHHHHHhh
Confidence 4455677777777777777777777654321100 0001111100 01 134677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 002594 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDYD 643 (903)
Q Consensus 565 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 643 (903)
++|.+|+..++++|..+|++..+++..|.++..+|+|+.|+..|+++++++|.|..+...+..+-.+..++.+. .+.|.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888887777777777766665544 56666
Q ss_pred HHHhhcc
Q 002594 644 AALDLEL 650 (903)
Q Consensus 644 ~al~l~p 650 (903)
+++...+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 6665544
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.71 E-value=6e-08 Score=77.49 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 590 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677778888888888888888888888888888888888888888888888888888887764
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.69 E-value=5.8e-05 Score=78.11 Aligned_cols=262 Identities=18% Similarity=0.106 Sum_probs=168.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (903)
.+-+++.-++..+-.|+++.|.+-|+..+. +|.. .-.+..+-.-....|..+.|..+-+++-...|.-+.++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 355666667777777888888888877663 3321 11122222233456778888888888888888877777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 459 RAALGESVEAIQDLSKALEF---EPNSAD---ILHERGIVN-FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~---~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 531 (903)
.+..|+++.|+++.+..... .++..+ +-..-+... .-..+...|...-.+++++.|+...+-..-+..++..|
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 77788888888877665443 222111 111111111 12235677777777788888887777777778888888
Q ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002594 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV---LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (903)
Q Consensus 532 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 608 (903)
+..++-.+++.+.+..|. +. ++.+|....--+.++.-++++ ..+.|++.+.....+..-+..|++..|..--
T Consensus 278 ~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 278 NLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred chhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888887777664 22 223333333333344444433 3456777777777888888888888888777
Q ss_pred HHhHccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 002594 609 SSGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL 648 (903)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l 648 (903)
+.+....|. ..++..++.+-... |+-.++..++-++++-
T Consensus 353 eaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 353 EAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 777777776 45666677776655 7777777777777753
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=8.9e-07 Score=91.51 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 002594 380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (903)
Q Consensus 380 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (903)
+....+..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|.+++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 355667777776 56799999999999999999997 5799999999999999999999999999888874 7888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002594 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (903)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 485 (903)
+.+|.++..+|++++|+..|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 999999999999999999999999999987644
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.65 E-value=6.7e-07 Score=77.62 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=92.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHc
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL----QAYILKGCAFSAL 116 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~----~a~~~lG~~~~~l 116 (903)
++..+-..|+.+.|++.|.++|.+. .++..|.|||.++.-+|+-++|+.++++|+++--+-. .+|+.+|.+|..+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3444567899999999999999999 6777799999999999999999999999999875433 3999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHH
Q 002594 117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (903)
Q Consensus 117 g~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a 153 (903)
|+.+.|...|+.+-.+ +++-...+++.++|-...+
T Consensus 129 g~dd~AR~DFe~AA~L--GS~FAr~QLV~lNPYAAlC 163 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL--GSKFAREQLVELNPYAALC 163 (175)
T ss_pred CchHHHHHhHHHHHHh--CCHHHHHHHHhcChHHHHH
Confidence 9999999999999654 3445566778887765544
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.63 E-value=1.2e-05 Score=79.81 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=129.3
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA 451 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 451 (903)
...+..++..|...++.|++++|+..|+.+...+|.. ..+.+.++.++++.+++++|+..+++-+.+.|.++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4568899999999999999999999999999998875 47899999999999999999999999999998774 46
Q ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002594 452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (903)
Q Consensus 452 ~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 523 (903)
++..|.++...= -..+|+..|+..+...|++.-+-.....+ ..+...+ ..--..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~I 173 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAI 173 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHH
Confidence 777777765432 24567778888888888763221110000 0000000 0111345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002594 524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (903)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 584 (903)
|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 666666666777776666666665544 4556666666667777666665544333333443
No 180
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.61 E-value=2.3e-08 Score=101.46 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=96.0
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHH
Q 002594 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108 (903)
Q Consensus 30 ~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~ 108 (903)
++.|.-+...|++...++..|++++||+.|+++|.++ +....|..||.+++++++...||.+|..|++++|+..+.|-.
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 4456677778899999999999999999999999999 666668899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 109 KGCAFSALGRKEEALSVWEKGYEHA 133 (903)
Q Consensus 109 lG~~~~~lg~~~eA~~~~~~al~~~ 133 (903)
+|.+...+|++++|..+|..+.++.
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcc
Confidence 9999999999999999999996554
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=1.8e-05 Score=88.53 Aligned_cols=281 Identities=16% Similarity=0.085 Sum_probs=160.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (903)
...|......|-.++|..+|.+.-+. -.+-..|...|.+++|.+..+.--.+ .-...|++.|..+...++
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 34456667778888888888776542 24556667777777777665432111 123567788888888888
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 465 SVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (903)
Q Consensus 465 ~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 524 (903)
.+.|+++|+++ +.-+| .++..|...|..+...|+.+.|+.+|..+- -|+.+.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhhe
Confidence 88888888764 22233 234456667777777788888887777653 233344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC--HH----------
Q 002594 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF--SK---------- 586 (903)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--~~---------- 586 (903)
.+..-+|+.++|....++ ..+..+-+.+|..|...|++.+|+..|.++-.. ...+ .+
T Consensus 946 rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 444444555544433322 234455566666666666666666666555321 1100 00
Q ss_pred --HHHHHH--------------HHHHHCCCHHHHHHHHHH----------hHccCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 002594 587 --AYHLRG--------------LLLHGLGQHKKAIKDLSS----------GLGIDP-SNIECLYLRASCYHAIGEYREAI 639 (903)
Q Consensus 587 --~~~~la--------------~~~~~~g~~~eA~~~~~~----------al~~~p-~~~~~~~~la~~~~~~g~~~~A~ 639 (903)
-....| .+|.+.|.+.+|++..=+ +-.++| .++..+..-+..+....+|++|.
T Consensus 1021 ~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 011112 233344444444432111 012244 35778888888899999999998
Q ss_pred HHH------HHHHhhccC----------------c--HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhc
Q 002594 640 KDY------DAALDLELD----------------S--MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (903)
Q Consensus 640 ~~~------~~al~l~p~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~ 688 (903)
..+ +.|+.+..+ . ...-...-..+-+.|..+.+.|.|..|-+-|..+++
T Consensus 1101 ~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1101 NLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 765 444443211 0 000112234566677777888888888777776664
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.60 E-value=0.00015 Score=75.11 Aligned_cols=290 Identities=16% Similarity=0.092 Sum_probs=211.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAA 461 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 461 (903)
+..|.+..-.|+-..|.+.-.+.-++-..+ +-++..-+..-.-.|+++.|.+-|+.++. +|+.- ..+..+-.-...
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 456677777889999999888876544333 45566667888889999999999998774 44321 222333333456
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHH-HHcCCHH
Q 002594 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK---SAYTYLGLAL-SSIGEYK 534 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~---~~~~~la~~~-~~~g~~~ 534 (903)
.|+.+.|+.+-+++....|.-+.+....-...+..|+++.|+++.+...... ++-. .+-..-+... ...-+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 8999999999999999999999999888888999999999999998765432 2221 1112222222 2234688
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH---Hh
Q 002594 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS---SG 611 (903)
Q Consensus 535 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~---~a 611 (903)
.|...-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|. +.+ +.+|....--+.++.-++ +.
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998875 332 333333333334444444 44
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHhhhhc
Q 002594 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFCWFDIDGD 688 (903)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~l~~a~~ 688 (903)
..+.|++.+..+..+..-...|++..|..--+.+....|... +|..++... ...|+-.+...++.++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--------~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--------AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--------HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 567899999999999999999999999999999999998753 222333332 233666666677666654
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.6e-05 Score=78.36 Aligned_cols=230 Identities=15% Similarity=0.045 Sum_probs=170.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002594 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (903)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 501 (903)
.+-++..|+|..++....+.-... ........+...|..+|.+...+.-....- .....+...++.+...-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345566799999888877765443 666777788889999998876655443332 1123455556666666666666
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 502 AVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (903)
Q Consensus 502 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (903)
-+..+.+.+... ..+......-|.++...|++++|+...... .+.++...-..++.++.+++-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666555544432 233345566688899999999999988763 3456666677888899999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHH
Q 002594 580 IDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (903)
Q Consensus 580 ~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 655 (903)
++.+ ..+..+|.++.. .+.+.+|.-+|+..-+..|..+..+..++.|+..+|++++|...++.++..++++++.
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8765 344445555443 3578999999999999888889999999999999999999999999999999999997
Q ss_pred HHHHHHH
Q 002594 656 FVLQCLA 662 (903)
Q Consensus 656 ~~~~~~~ 662 (903)
+.++...
T Consensus 244 L~Nliv~ 250 (299)
T KOG3081|consen 244 LANLIVL 250 (299)
T ss_pred HHHHHHH
Confidence 6655443
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.56 E-value=2.3e-06 Score=88.51 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=54.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Q 002594 484 DILHERGIVN-FKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGH 556 (903)
Q Consensus 484 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 556 (903)
...+..+..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3344444433 33455555555555555555554 3455555555555555555555555555554442 455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002594 557 LTQFYQDLANSEKALECLQQVLYIDKRFS 585 (903)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 585 (903)
+|.++...|++++|+..|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555555555555543
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.55 E-value=1.6e-06 Score=94.07 Aligned_cols=120 Identities=22% Similarity=0.266 Sum_probs=102.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 002594 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (903)
+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455567788888888887777764 55667888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
.|+...+++++..|++...|+.|+.+|..+|+++.|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999766643
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.54 E-value=2.4e-05 Score=72.77 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=122.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHH
Q 002594 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALE 572 (903)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 572 (903)
.+.=+.+.+..-..+.+...|.. .-.+.+|..+...|++.||...|++++. +.-.++..+..+++..+..+++..|..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 33445555555556666666654 3457788899999999999999998876 456778888899999999999999999
Q ss_pred HHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 573 CLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 573 ~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
.+++..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+.++|+.++|..-+....+.
T Consensus 146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999988874 4677888899999999999999999999998887 788888899999999888888776655443
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=2.3e-06 Score=92.98 Aligned_cols=116 Identities=24% Similarity=0.235 Sum_probs=67.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 537 (903)
++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334445566666666665555542 33445555555566666666666666666666555556666666666666666
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 538 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (903)
...++++...|++...|+.|+.+|...|+++.|+..++.
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 666666666666666666666666666666666655543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.49 E-value=2.3e-06 Score=76.47 Aligned_cols=89 Identities=22% Similarity=0.142 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLL 594 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~ 594 (903)
+.+|.++...|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++++...|+ +..+...++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 333444444444444444444444332111 233334444444444444444444444433333 23333333334
Q ss_pred HHHCCCHHHHHHHHH
Q 002594 595 LHGLGQHKKAIKDLS 609 (903)
Q Consensus 595 ~~~~g~~~eA~~~~~ 609 (903)
+...|++++|+..+-
T Consensus 85 L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 85 LYNLGRPKEALEWLL 99 (120)
T ss_pred HHHCCCHHHHHHHHH
Confidence 444444444444333
No 189
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.5e-05 Score=80.34 Aligned_cols=307 Identities=15% Similarity=0.066 Sum_probs=189.3
Q ss_pred HhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
-+.....+++.+++.++..++..|+|.+|.+.+... +...|. .-..+.++|.++++.|.|..+..+|.+|+
T Consensus 231 ~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 231 HVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHH
Confidence 334445578889999999999999999999887654 222332 12346789999999999999999999999
Q ss_pred Hh---------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHH
Q 002594 443 QS---------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNA 501 (903)
Q Consensus 443 ~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~ 501 (903)
+. .| ...+..++.|..|...|+.-.|.++|.++......+|.+|..++.+.+...+ .++
T Consensus 311 ~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee 390 (696)
T KOG2471|consen 311 RNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEE 390 (696)
T ss_pred HHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhh
Confidence 51 11 2356789999999999999999999999999988899999999998875321 111
Q ss_pred HHHHHHH--------------HH--HhC--CCC------HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh------
Q 002594 502 AVEDLSA--------------CV--KLD--KEN------KSAYTYLGLALSS-----IGEYKKAEEAHLKAIQL------ 546 (903)
Q Consensus 502 A~~~~~~--------------al--~~~--p~~------~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~------ 546 (903)
......+ .+ +.+ +.. +..-..+|.++.+ +..-..--..+.-+...
T Consensus 391 ~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~ 470 (696)
T KOG2471|consen 391 GNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSS 470 (696)
T ss_pred ccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCC
Confidence 1111100 00 000 000 0111112222111 10000000000000000
Q ss_pred ----------------------Cc-cc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002594 547 ----------------------DR-NF-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (903)
Q Consensus 547 ----------------------~p-~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 592 (903)
.| .. ..++.+.+.+-..+|+.-.|+..-++.+.. |+...++..+|
T Consensus 471 ~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLG 549 (696)
T KOG2471|consen 471 SEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLG 549 (696)
T ss_pred CcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHH
Confidence 01 11 134556677778899999999999988865 44456666665
Q ss_pred HHH-----HHCCCHHHHHHHHHHhH------c-----------------cCCC----------C-----HHHHHHHHHHH
Q 002594 593 LLL-----HGLGQHKKAIKDLSSGL------G-----------------IDPS----------N-----IECLYLRASCY 629 (903)
Q Consensus 593 ~~~-----~~~g~~~eA~~~~~~al------~-----------------~~p~----------~-----~~~~~~la~~~ 629 (903)
.+| ..+.+..+|..++.--+ . ++|. . ...++++|.++
T Consensus 550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 554 45777777777665411 0 1111 1 13678999999
Q ss_pred HHcCCHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Q 002594 630 HAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (903)
Q Consensus 630 ~~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 686 (903)
.-.|++++|..++..|..+-+ .++++.... .|. -...|+-..|+..+++.
T Consensus 630 alq~~~dqAk~ll~~aatl~hs~v~~~A~~la--vyi-----dL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 630 ALQGHHDQAKSLLTHAATLLHSLVNVQATVLA--VYI-----DLMLGRSQDALARLKQC 681 (696)
T ss_pred HHhcccHHHHHHHHHHHHhhhccccHHHHHHH--HHH-----HHhcCCCcchHHHHHhc
Confidence 999999999999999988877 333332211 111 23456666666666544
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=4.8e-06 Score=74.47 Aligned_cols=96 Identities=22% Similarity=0.148 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC---CHHHHHHH
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLR 625 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 625 (903)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999875443 568999999999999999999999999999888 77888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 002594 626 ASCYHAIGEYREAIKDYDAALD 647 (903)
Q Consensus 626 a~~~~~~g~~~~A~~~~~~al~ 647 (903)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.43 E-value=7.1e-05 Score=74.54 Aligned_cols=189 Identities=16% Similarity=0.052 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 002594 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH 487 (903)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 487 (903)
.+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.++++.|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677888888888888888888888888877754 46777888888888888888888888888877654 3566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 002594 488 ERGIVNFKF--------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (903)
Q Consensus 488 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 559 (903)
..|.+++.. .-..+|+..++..+...|++.-+-..... +..+...+ ..--..+|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHHH
Confidence 666665532 12345666666667777765432111111 01111111 122345788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCH
Q 002594 560 FYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (903)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 619 (903)
.|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999987754 46788899999999999999887655544455553
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=4.7e-06 Score=78.16 Aligned_cols=112 Identities=27% Similarity=0.331 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (903)
++.+-.-|.-++..|+|++|..-|..+|..-|..+ ..|.+.|.+++.++.++.|+..+.++++++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 45566778899999999999999999999988754 4677889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002594 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (903)
Q Consensus 456 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (903)
|.+|..+..+++|+..|.+.++.+|....+....+.+
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999776655444443
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=8.4e-07 Score=71.53 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=48.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002594 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (903)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (903)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666655554
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.00012 Score=83.65 Aligned_cols=226 Identities=16% Similarity=0.087 Sum_probs=174.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (903)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 505 (903)
...+++..|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 35689999999999999999999999999999999999999999888888778888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHcCCH---------HHHHHHHH
Q 002594 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANS---------EKALECLQ 575 (903)
Q Consensus 506 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~---------~~A~~~~~ 575 (903)
|++++..+|. .+.+..+-.+|.+.+.|.+-.+.--+..+..|+.+..+-. +..+....... .-|...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 8888888899999988887666666666677887554333 33333333222 33555666
Q ss_pred HHHhhC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHh-H-ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 576 QVLYID-KRFS-KAYHLRGLLLHGLGQHKKAIKDLSSG-L-GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 576 ~al~~~-p~~~-~~~~~la~~~~~~g~~~eA~~~~~~a-l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
+.++.. +-.. .-....-.++..+|.+++|...+..- . ...+.+...-......+..++++.+-.+...+++...+|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666655 2211 11233445677889999999998433 2 334444455556677778889999999999999988888
Q ss_pred c
Q 002594 652 S 652 (903)
Q Consensus 652 ~ 652 (903)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 7
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.40 E-value=1.1e-06 Score=72.01 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=47.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChH
Q 002594 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (903)
Q Consensus 76 a~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~ 138 (903)
..+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 456777777888888888888888877777777888888888888888888887776665543
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00044 Score=68.08 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------------------GEAWKRRGQARAALGESVEAIQDLSKA 475 (903)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (903)
...|...-.++.+...+++|...+...-+++..+ .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4455555566666666777666655443332211 112233455555666666665555443
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Q 002594 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAW 554 (903)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 554 (903)
... ...+..........+..+..+++-+ ..+.+.+..++...|.|.-.+..+.+.++.+ |..+...
T Consensus 149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 321 1111122222223355555555533 3566778888888899999999999999887 5667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHH
Q 002594 555 GHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 628 (903)
..+|.+.++.|+.+.|..+|+..-+.. .....+..+.+.++.-.+++.+|...|.+++..+|.++.+-.+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 889999999999999999888654322 13345677788888899999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 629 YHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
+..+|+..+|++..+.++...|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999764
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=0.00013 Score=81.96 Aligned_cols=206 Identities=14% Similarity=0.035 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002594 382 DFRLSRGIAQVNEGKYASAISIF------------DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (903)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (903)
..|-.+|.......+.+-|.-++ +++.+ +|+. .-...|.+...+|-.++|...|.+.-..
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~----- 829 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLAIELGMLEEALILYRQCKRY----- 829 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence 44556666666655555554443 33322 3332 2234566677888999999999887653
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCCC----
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC----------VKLDKE---- 515 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p~---- 515 (903)
-.+-..|...|.+++|.+..+.--.+. -...|++.|..+...++.+.|+++|+++ +.-+|.
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 355667888899999888766432222 2457888899999999999999999874 222332
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002594 516 ------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (903)
Q Consensus 516 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 589 (903)
++..|...|..+...|+.+.|+.+|..+- -|+.+..+..-+|+.++|-.+.++ ..+..+.+
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcY 971 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACY 971 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHH
Confidence 34566777888888888998888888763 466777777788888888776554 45567888
Q ss_pred HHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 590 LRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 590 ~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
.+|+.|...|+..+|+..|.+|-.
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.38 E-value=1.2e-05 Score=73.08 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 452 (903)
..+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++-++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 457888999999999999999999999999988864 57889999999999999999999999999999874 578
Q ss_pred HHHHHHHHHcCC
Q 002594 453 KRRGQARAALGE 464 (903)
Q Consensus 453 ~~la~~~~~~g~ 464 (903)
+..|.++..+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888877655
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=4.5e-05 Score=70.96 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (903)
+.+....-..+.+...| ...-.+.+|..+.+.|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44444445555555555 344566777778888888888888877765 3456677777778888888888888888888
Q ss_pred HHHhCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 002594 543 AIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 543 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 611 (903)
..+.+|.. ++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+...
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77777654 666777778888888888888888888877776 566666777777788777766555443
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.36 E-value=4.7e-06 Score=75.58 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh---HHHHHHHHHH
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQSYEI----QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ---AYILKGCAFS 114 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~----~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~---a~~~lG~~~~ 114 (903)
.+-..+.+|+|++|++.|+......|-. .....++.+|++.|+|++|+..+++-|+++|++.+ +++.+|.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 4566899999999999999988887443 44788999999999999999999999999999877 9999999999
Q ss_pred HcCC---------------HHHHHHHHHHHHhhccCCh
Q 002594 115 ALGR---------------KEEALSVWEKGYEHALHQS 137 (903)
Q Consensus 115 ~lg~---------------~~eA~~~~~~al~~~~~~~ 137 (903)
.+.. ..+|+..|++.+...|++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9988 8899999999877777664
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.34 E-value=1.8e-06 Score=69.62 Aligned_cols=55 Identities=33% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 598 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
.|++++|+..|++++..+|++.++++.+|.+|...|++++|...+++++..+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3444444444444444444444444444444444444444444444444444443
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=1.3e-05 Score=80.41 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 457 (903)
.|..|.-++..|+|..|...|...++..|+. +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999885 5899999999999999999999999999988765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002594 458 ARAALGESVEAIQDLSKALEFEPNSADILH 487 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 487 (903)
+...+|+.++|...|+++++..|....+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999998765543
No 203
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00011 Score=78.02 Aligned_cols=263 Identities=17% Similarity=0.158 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKE---------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
++..+|.++++.|.|.-+..+|.++++. .| ...+++++.|..|...|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4568999999999999999999999961 11 23578899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------HHHh-------CCC---CHHHHHHHHHHHHHcC
Q 002594 445 NPSAGEAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF-------EPN---SADILHERGIVNFKFK 497 (903)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~--------------al~~-------~p~---~~~~~~~la~~~~~~g 497 (903)
...++..|.+++.+.+...+ .++......+ .+-+ .+. -+..-..++.+..+.+
T Consensus 365 fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrna 444 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNA 444 (696)
T ss_pred HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhh
Confidence 99999999999999875321 1111111111 0000 000 0111112222222111
Q ss_pred -----CHHHHHHHHHHHHH----------------------------hCC-CCH-----------HHHHHHHHHHHHcCC
Q 002594 498 -----DFNAAVEDLSACVK----------------------------LDK-ENK-----------SAYTYLGLALSSIGE 532 (903)
Q Consensus 498 -----~~~~A~~~~~~al~----------------------------~~p-~~~-----------~~~~~la~~~~~~g~ 532 (903)
.-..--..+.-+.. -.| ..+ ..+-..+.+-..+|+
T Consensus 445 l~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd 524 (696)
T KOG2471|consen 445 LYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGD 524 (696)
T ss_pred hhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000000000000 001 111 234456677778999
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHh-----------------------hCC--
Q 002594 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQVLY-----------------------IDK-- 582 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~-----------------------~~p-- 582 (903)
.-.|+..-.+.++. |+...++..+|.+| +-+.+..+|...+.--+- ++|
T Consensus 525 ~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~ 603 (696)
T KOG2471|consen 525 PIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPST 603 (696)
T ss_pred hhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcC
Confidence 99999998888765 44555666665554 456666677665544210 011
Q ss_pred ----C----C-----HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 583 ----R----F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 583 ----~----~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (903)
+ . ...++++|.++.-+|++++|..++..+..+-+ .++++....-.+-..+|+...|...+++.-
T Consensus 604 ~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 604 GRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred CCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 0 0 13478999999999999999999999988877 456777666677788999999998887653
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.8e-06 Score=69.59 Aligned_cols=65 Identities=28% Similarity=0.452 Sum_probs=50.6
Q ss_pred HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHH
Q 002594 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (903)
Q Consensus 592 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 656 (903)
..+|...+++++|+.++++++.++|+++..+..+|.++..+|++.+|...|+++++..|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45677778888888888888888888888888888888888888888888888888888776643
No 205
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=1.7e-05 Score=79.74 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHH
Q 002594 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ 559 (903)
Q Consensus 486 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 559 (903)
.+..|.-++..|+|..|...|...++..|+. +.+++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444444444444444444444444444443 2444555555555555555555555544444433 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002594 560 FYQDLANSEKALECLQQVLYIDKRFSK 586 (903)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 586 (903)
+...+|+.++|...|+++++..|....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 555555555555555555555554433
No 206
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0023 Score=68.48 Aligned_cols=324 Identities=15% Similarity=0.086 Sum_probs=191.5
Q ss_pred HHHHHHhhccCCc---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHH
Q 002594 367 KFCVTRISKSKSI---SVDFRLSRGIAQV-NEGKYASAISIFDQILKED---PMY----PEALIGRGTARAFQR-ELEAA 434 (903)
Q Consensus 367 ~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~~A 434 (903)
..|++.+....|. .+...+.+|..++ ...+++.|...++++..+. |+. ..+...++.+|.... .+..|
T Consensus 29 IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~ 108 (629)
T KOG2300|consen 29 IKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPA 108 (629)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchH
Confidence 3345555444432 3455667776554 4678899999999887653 332 356677888888776 78888
Q ss_pred HHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHH--HHHHHHcCCHHHH--
Q 002594 435 ISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----DILHER--GIVNFKFKDFNAA-- 502 (903)
Q Consensus 435 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l--a~~~~~~g~~~~A-- 502 (903)
...+.+++++....+ ...+.++.++.-..++..|++.+.-.......-. .+.+.+ +.++....+..+.
T Consensus 109 KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ 188 (629)
T KOG2300|consen 109 KALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEK 188 (629)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 889999998876654 3566788888888889888888543322211111 122222 2333332222222
Q ss_pred -HHHHHHHHHhCCCCH---H----HHHHHHHH-H----------------------------------------------
Q 002594 503 -VEDLSACVKLDKENK---S----AYTYLGLA-L---------------------------------------------- 527 (903)
Q Consensus 503 -~~~~~~al~~~p~~~---~----~~~~la~~-~---------------------------------------------- 527 (903)
...+.+..+....++ + .+..+-.+ |
T Consensus 189 ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wl 268 (629)
T KOG2300|consen 189 LLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWL 268 (629)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhc
Confidence 222222222111111 0 01111111 1
Q ss_pred -----------------HHcCCHHHHHHHHHHHHHhCcc------c--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 528 -----------------SSIGEYKKAEEAHLKAIQLDRN------F--------LEAWGHLTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 528 -----------------~~~g~~~~A~~~~~~al~~~p~------~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (903)
...|-+++|.++-++++..... . ...+-+++.+-.-.|++.+|++....
T Consensus 269 pkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~d 348 (629)
T KOG2300|consen 269 PKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVD 348 (629)
T ss_pred cHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1234455565555555543211 1 12233445555667888888777766
Q ss_pred HHhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 577 VLYI---DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYD 643 (903)
Q Consensus 577 al~~---~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 643 (903)
+.+. .|. .+..+..+|......+.++.|...|..|.+..... +-+..++|.+|.+.|+-+.-.+.++
T Consensus 349 m~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld 428 (629)
T KOG2300|consen 349 MKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD 428 (629)
T ss_pred HHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH
Confidence 6543 332 24456677877788888888888888888764332 3455678888988877655544444
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccC
Q 002594 644 AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (903)
Q Consensus 644 ~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 690 (903)
..-..+....-.....+.++|-.|...+..+++++|...+...++..
T Consensus 429 ~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 429 LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 43222222333445667788999999999999999999998888766
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=8.7e-05 Score=71.73 Aligned_cols=142 Identities=16% Similarity=0.184 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHC-CCHHHHHHHHHHhHccCCCC------HH
Q 002594 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPSN------IE 620 (903)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~ 620 (903)
|...+.+|. .++.++|+.++++++++..+.. ..+..+|.+|... .++++|+.+|+.+-+..... ..
T Consensus 77 YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 333444443 3477777777777777655432 2345678888654 88999999999988764332 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
++...+..-..+++|.+|+..|++.....-++.-..+..-..++..|+++....+.-.+...+++-.+++|.|.+.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 6777788888899999999999999888777766555444556777888877677666777777778999999876
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00083 Score=66.20 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=175.1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------------------PEALIGRGTARAFQRELEAAISDFT 439 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~ 439 (903)
.....|-.+-.++.+...+++|..-+...-+.+..+ .......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 345666677777888888888888777665543211 1223445667777788877776666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 002594 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKS 518 (903)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 518 (903)
..... ...+..........+..+...++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+ |..+.
T Consensus 147 ~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~ 213 (366)
T KOG2796|consen 147 KLKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ 213 (366)
T ss_pred HHHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH
Confidence 54431 1112222233333355666666543 3577788889999999999999999999988 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002594 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (903)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 592 (903)
....+|.+.++.|+.+.|..++++.-+.. ....-+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 88899999999999999999999654332 223556677888888999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHhHccCCCCH---HHHHHHHHHH
Q 002594 593 LLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCY 629 (903)
Q Consensus 593 ~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~ 629 (903)
.|+..+|+...|++.++.+++..|... ...+++..+|
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 999999999999999999999998742 3444554443
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00033 Score=67.83 Aligned_cols=159 Identities=15% Similarity=0.050 Sum_probs=109.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHH
Q 002594 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRF------SKAYHL 590 (903)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~ 590 (903)
+.+| +.++..+|+.++++++++..+. ...+..+|.+|... .++++|+.+|+++-+..... ...+..
T Consensus 81 ~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 81 ANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 3343 4447888888888888776543 23345778888654 89999999999997765432 234666
Q ss_pred HHHHHHHCCCHHHHHHHHHHhHccCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 002594 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (903)
Q Consensus 591 la~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 663 (903)
.+..-..+++|.+|+..|++.....-++. +.++.-|.|+....+.-.+...+++..+++|...+..-...+.-
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~ 239 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKD 239 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 67777889999999999999887655553 45666788888889999999999999999998877543333332
Q ss_pred HHHHHHHHHhhcHHHHHHHH
Q 002594 664 YQKEIALYTASKINSEFCWF 683 (903)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~l 683 (903)
+.-++.......|.+....|
T Consensus 240 L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 240 LLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred HHHHHhhhhHHHHHHHHHhh
Confidence 22333333333444444444
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=5.2e-06 Score=89.38 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=59.5
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH 132 (903)
Q Consensus 69 ~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a---~~~lG~~~~~lg~~~eA~~~~~~al~~ 132 (903)
+..++|+|.+|+++|+|++|+..|++||+++|++..+ |+.+|.+|..+|++++|+.+|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3459999999999999999999999999999999865 999999999999999999999999543
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=7e-06 Score=88.36 Aligned_cols=70 Identities=19% Similarity=0.037 Sum_probs=58.6
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA---YHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 546 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
.+|+++.+++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467778888888888888888888888888888888888754 8888888888888888888888888873
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.17 E-value=9.2e-05 Score=64.65 Aligned_cols=99 Identities=24% Similarity=0.288 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQAR 459 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 459 (903)
+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+..+|+.++|++.+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999986554 35788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 002594 460 AALGESVEAIQDLSKALEFEPNS 482 (903)
Q Consensus 460 ~~~g~~~~A~~~~~~al~~~p~~ 482 (903)
..+|+-+.|...|+.+-++....
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999998876543
No 213
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.016 Score=63.32 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=94.6
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002594 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (903)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (903)
.+.++.+|.+.++|+.+...+..+ .++++...|++.+...|..+.+|.......+...+|+....+|.+++..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 445788999999999999887776 9999999999999999999999999999999999999999999999864322 33
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHh
Q 002594 451 AWK-RRGQARAALGESVEAIQDLSKALE-------FEPNSADILHERGIVNFK---------FKDFNAAVEDLSACVKL 512 (903)
Q Consensus 451 ~~~-~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~ 512 (903)
.|. .+..+....|+...+....-++.+ .++....+|...+..+.. ..+.+.-...|++++..
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 333 233333444444444333333322 344455555555444332 22334445556666543
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00052 Score=69.82 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHH
Q 002594 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVN 493 (903)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~ 493 (903)
....+.+....|++.+|...+++.++..|.+..++..--.++...|+...-...+++.+.. +++. ..+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444566677889999999999999999999888888888899999999999999998876 6655 34555677788
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHH
Q 002594 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK 569 (903)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 569 (903)
...|-|++|.+..++++++++.+..+...++.++...|++.++.+.+.+.-..-... ..-|-..|.++.+.+.|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 899999999999999999999999999999999999999999998887653322211 1234456778888899999
Q ss_pred HHHHHHHHH
Q 002594 570 ALECLQQVL 578 (903)
Q Consensus 570 A~~~~~~al 578 (903)
|+++|.+-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999998765
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=4e-05 Score=71.76 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH
Q 002594 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE----------YREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670 (903)
Q Consensus 601 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~ 670 (903)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++|+.++|+..++++..+.++...|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3455555555555666666655555555554422 456666677777777777777777777776666543
Q ss_pred H----HhhcHHHHHHHHhhhhccCCCcHHHH
Q 002594 671 Y----TASKINSEFCWFDIDGDIDPLFKEYW 697 (903)
Q Consensus 671 ~----~~~~~~~A~~~l~~a~~~~p~~~~~w 697 (903)
- ....|++|..+|.++.+.+|++..|+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 2 23568999999999999999999885
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00063 Score=69.24 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=95.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcC
Q 002594 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNF---LEAWGHLTQFYQDLA 565 (903)
Q Consensus 490 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 565 (903)
+.+....|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++. ..+.-.++-.+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344455666666666666666666666666666666666666666666666666654 4333 333344555566667
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 002594 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKD 641 (903)
Q Consensus 566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 641 (903)
-|++|.+..++++++++.+..+.+.++.++...|+++++.+.+.+.-..-... ..-|..-|.++..-+.|+.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777777777777666666677777777777777766665543321111 12244456666666677777776
Q ss_pred HHHHH
Q 002594 642 YDAAL 646 (903)
Q Consensus 642 ~~~al 646 (903)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 66543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.02 E-value=6.2e-06 Score=68.50 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhHcc---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DP----SNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
..++.++|.+|..+|++++|+.+|++++++ .+ ..+.++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555666666666666666666665543 11 11345666666666666666666666666654
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0027 Score=62.09 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=46.5
Q ss_pred cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
.....+..+..-+.++...++|++|..++.++.+-..++ +.++-..|........+.++..+|+++..+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334446677777788888888999999888888654433 234445555556666777777777777653
No 219
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0015 Score=64.63 Aligned_cols=234 Identities=16% Similarity=0.234 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 002594 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK-KAEEAHLKA 543 (903)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~a 543 (903)
..|+.+.+.++.++|.+..+|...-.++..++ +..+-++++.+.++.+|.+..+|...-.+....|++. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 44555666666666666666665555555443 4556666666667777777777666666666666665 556666666
Q ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----CHHHHHHHHHHhHccCCC
Q 002594 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG-----QHKKAIKDLSSGLGIDPS 617 (903)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~ 617 (903)
+..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+.+.|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666667777776666666655444444332111111 11 123445566666777777
Q ss_pred CHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHHHHHhhc---HHHHHHHHhhhh-cc
Q 002594 618 NIECLYLRASCYHA-IG--EYREAIKDYDAAL-DLELDSMEKFVLQCLAFYQKEIALYTASK---INSEFCWFDIDG-DI 689 (903)
Q Consensus 618 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~l~~a~-~~ 689 (903)
+..+|..|.-++.. .| .+.+-.......+ ......+.....+. -.|......+..+. ..+|...++... +.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~-d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~ 298 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLL-DLYAEDALAYKSSAEELARKAVKLYEDLAIKV 298 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHH-HHHHHHHhhccccchHHHHHHHHHHHHHhhcc
Confidence 77777777666664 33 1222222222322 22222222211111 11211111122222 224666666544 89
Q ss_pred CCCcHHHHHhh
Q 002594 690 DPLFKEYWCKR 700 (903)
Q Consensus 690 ~p~~~~~w~~r 700 (903)
||--+.||++.
T Consensus 299 DpiR~nyW~~~ 309 (318)
T KOG0530|consen 299 DPIRKNYWRHK 309 (318)
T ss_pred CcHHHHHHHHH
Confidence 99999999766
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.95 E-value=6e-05 Score=70.60 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhH
Q 002594 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 612 (903)
++.|.+.++.....+|.+.+.+++.|.++..+.++...-+ ...-+++|+.-|++|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e------------------------s~~miedAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE------------------------SKKMIEDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch------------------------HHHHHHHHHHHHHHHH
Confidence 4455555555555566666665555555544432211000 0012456666777777
Q ss_pred ccCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhccCcHH
Q 002594 613 GIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSME 654 (903)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~ 654 (903)
.++|+..++++.+|.+|..++. |++|..+|++|...+|++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 7777777777777777765543 78899999999999999854
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.93 E-value=0.065 Score=59.87 Aligned_cols=334 Identities=10% Similarity=0.023 Sum_probs=218.3
Q ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhC
Q 002594 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSN 445 (903)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~ 445 (903)
.-.+...+...|..-..|-..|..-.+.|..+.+.+.|++++.--|.....|...-. +--..|+.+.-...|++|....
T Consensus 65 r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v 144 (577)
T KOG1258|consen 65 REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYV 144 (577)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 345667788899999999999999999999999999999999999987777765433 3345577888888888888765
Q ss_pred CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----------------------HHHHHH-HHH-----
Q 002594 446 PSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI----------------------LHERGI-VNF----- 494 (903)
Q Consensus 446 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------~~~la~-~~~----- 494 (903)
..+ ...|-.....-..++++..-...|++.++..-..... ...+.. +..
T Consensus 145 G~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~ 224 (577)
T KOG1258|consen 145 GLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKIT 224 (577)
T ss_pred ccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcc
Confidence 543 2334444444455556666666666655531111000 000000 000
Q ss_pred ------------------HcCCHHHHHHHH------------------------HHHHHh-----CCC---CHHHHHHHH
Q 002594 495 ------------------KFKDFNAAVEDL------------------------SACVKL-----DKE---NKSAYTYLG 524 (903)
Q Consensus 495 ------------------~~g~~~~A~~~~------------------------~~al~~-----~p~---~~~~~~~la 524 (903)
..+.++++...+ +..++. .|. +...|....
T Consensus 225 ~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 225 HSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred cccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 001122222111 111111 122 234566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Q 002594 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKK 603 (903)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~e 603 (903)
......|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++. |..+.....-+......|++..
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 677778888888888888888777788888888888888888888888888877764 5566677777777788889999
Q ss_pred HHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHH
Q 002594 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFCW 682 (903)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 682 (903)
|...+++..+..|+..++-...+....+.|+.+.+....+-.....++.. ........+.+.+... .-.+..+.|...
T Consensus 385 A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 385 AKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE-NNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc-CcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998888888888888888888888888888842222111222111 0111112223333222 235678889999
Q ss_pred HhhhhccCCCcHHHHHhhc
Q 002594 683 FDIDGDIDPLFKEYWCKRL 701 (903)
Q Consensus 683 l~~a~~~~p~~~~~w~~r~ 701 (903)
+..+.++.|.+...|....
T Consensus 464 l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHhhhcCCccHHHHHHHH
Confidence 9999999999998875443
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.88 E-value=2.7e-05 Score=64.65 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhcc
Q 002594 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (903)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~ 689 (903)
|+...++.++|.+|..+|++++|+.+|++++++.....+.....+.++++.|.++...|++++|+.+++++.++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34467899999999999999999999999998843333334456789999999999999999999999998765
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.88 E-value=0.002 Score=69.74 Aligned_cols=191 Identities=17% Similarity=0.127 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (903)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 499 (903)
.+..-..+..+.+.-++...+|++++|+.+++|..++.- ......+|..+|+++++...... .........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 344445567788889999999999999999988877652 23346788888888887643211 111111111111
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 500 NAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQ 575 (903)
Q Consensus 500 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (903)
-+ .....+.+ ..+...+|.|..++|+.++|++.++..++..|. +..+..+|..++...+.|.++...+.
T Consensus 247 ~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11 11111111 344567888888888888888888888887765 46678888888888888888888887
Q ss_pred HHHhh-CCCCHHHHHHHHHHHHH-CCC---------------HHHHHHHHHHhHccCCCCHHHHH
Q 002594 576 QVLYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGLGIDPSNIECLY 623 (903)
Q Consensus 576 ~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~~al~~~p~~~~~~~ 623 (903)
+.-++ -|..+...+..|.+..+ .++ -..|++.+.+|++.+|..+..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 75433 24445555544443322 111 13366777777777777665444
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.85 E-value=0.0035 Score=67.97 Aligned_cols=188 Identities=13% Similarity=0.049 Sum_probs=118.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 002594 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468 (903)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 468 (903)
....+..+...-++.-.+||+++|+.+++|..+|.-. .....+|..+|+++++...... .........|..-+
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e- 248 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE- 248 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh-
Confidence 3445678999999999999999999999999887632 2457888999999886433211 11111111111111
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 469 IQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 469 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
.....+. ...+...+|.+..++|+.++|++.++..++.+|. +..++.++..++...+.|.++...+.+.-
T Consensus 249 ------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 ------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111111 2345566788888888888888888888877665 34577778888888888888877777753
Q ss_pred Hh-CcccHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 002594 545 QL-DRNFLEAWGHLTQFYQD-LAN---------------SEKALECLQQVLYIDKRFSKAYH 589 (903)
Q Consensus 545 ~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 589 (903)
++ -|+.+...+.-|.+..+ .++ -..|.+.+.+|++.+|..+..+.
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 33 24444444443333221 111 13477889999999998776554
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0033 Score=61.58 Aligned_cols=115 Identities=16% Similarity=0.043 Sum_probs=73.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 002594 528 SSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRFSKAYHLRGLLL 595 (903)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 595 (903)
...-++++|+.+|++++.+-... .+.+...+.++.+..++++|-..+.+-... .++....+.....++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34456777888888777654332 345556777888888888887777665432 233334455555666
Q ss_pred HHCCCHHHHHHHHHHhHcc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 596 HGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAIGEYREAIKDYD 643 (903)
Q Consensus 596 ~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (903)
....+|..|..+++..-++ .|++..+..+|-..| ..|+.++....+.
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 6677899999998887665 344455666665554 3466666655543
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=2.6e-05 Score=52.43 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 002594 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (903)
Q Consensus 92 ~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~ 123 (903)
|++||+++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.77 E-value=0.016 Score=65.82 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=117.6
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHH--------HHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNFLEAWG--------HLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 596 (903)
-.|+.+.++..+.++.+ .++-..... .....+. .....+.|.+++.......|+..-.++..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46899999999999877 332211111 1111111 2456788999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHhHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH
Q 002594 597 GLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT 672 (903)
Q Consensus 597 ~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~ 672 (903)
..|+.++|++.|++++.....- .-+++.+|.++..++++++|..+|.+..+.+.-+ .+...|..|.++..
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM 352 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh
Confidence 9999999999999988643332 3578899999999999999999999999876543 34667778888888
Q ss_pred hhcH-------HHHHHHHhhhhc
Q 002594 673 ASKI-------NSEFCWFDIDGD 688 (903)
Q Consensus 673 ~~~~-------~~A~~~l~~a~~ 688 (903)
.++. ++|..+|.++..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 8888 777777765543
No 228
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=8.1e-05 Score=72.22 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (903)
..|..++....|+.|+.+|.+++..+|..+..+.+.+.++++..+++.+.....+++++.|+...+++.+|........|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHh
Q 002594 466 VEAIQDLSKALEF 478 (903)
Q Consensus 466 ~~A~~~~~~al~~ 478 (903)
++|+..+.++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666443
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.73 E-value=0.00094 Score=70.57 Aligned_cols=136 Identities=10% Similarity=-0.054 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002594 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (903)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777777778889999999886666667888888888666 4555559999999999999988888888888889
Q ss_pred CCCHHHHHHHHHHhHccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 598 LGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 598 ~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
.|+.+.|..+|++++..-|... .+|......-...|+.+.....++++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999988766544 58888888888999999999999999999887543
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.0011 Score=70.02 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
+|..+.....+.+..+.|...|.+|.+..+-...+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666654444445555555655444 3344446666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 583 (903)
.|+.+.|..+|++++..-+... .+|......-...|+.+....+.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6666666666666665544332 45555555555566666666666666655555
No 231
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.68 E-value=6.6e-05 Score=80.64 Aligned_cols=112 Identities=24% Similarity=0.314 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (903)
.+-..|..++..+.|+.|+..|.++++++|+++..+-+++.++...+++..|+..+.++++.+|....+|+..|.+....
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 463 GESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (903)
Q Consensus 463 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (903)
+.+.+|+..|++...+.|+++.+...+..+-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999999999999888776665543
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.66 E-value=0.027 Score=62.10 Aligned_cols=74 Identities=11% Similarity=-0.012 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH----------HhhcHHHHHHH
Q 002594 619 IECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY----------TASKINSEFCW 682 (903)
Q Consensus 619 ~~~~~~la~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~ 682 (903)
+.++..+|...... +..+++...|.++++++|+...++...+..+...-.... .......|+..
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 35667777777777 888999999999999999888877766655544432221 22234557777
Q ss_pred HhhhhccCCC
Q 002594 683 FDIDGDIDPL 692 (903)
Q Consensus 683 l~~a~~~~p~ 692 (903)
|-+++.+.+.
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 7777777766
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.66 E-value=0.015 Score=64.26 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHH
Q 002594 585 SKAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY-----------------REAIKD 641 (903)
Q Consensus 585 ~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~ 641 (903)
+.++..+|...... +..++++..|..+++.+|....+|+.+|..+...=+. ..|+..
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 34566777777777 8899999999999999999999999988877654221 235556
Q ss_pred HHHHHhhccC
Q 002594 642 YDAALDLELD 651 (903)
Q Consensus 642 ~~~al~l~p~ 651 (903)
|-+++...++
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 6666666555
No 234
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.63 E-value=0.13 Score=60.10 Aligned_cols=305 Identities=17% Similarity=0.081 Sum_probs=193.5
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNP-----SAGEA 451 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 451 (903)
+...+.+..-+..+...|...+|+...-.+ .+|... ..+...+.-+...++..- +...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchH
Confidence 334778888888889999999998876443 233322 222333444444444332 333333333 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 002594 452 WKRRGQARAALGESVEAIQDLSKALEFEPN---------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----- 517 (903)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 517 (903)
....+.......++.+|..++.++...-+. ..+..-..|.+....|++++|++..+.++..-|.+.
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 667778888899999999998888765443 134555678888899999999999999999877653
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----H--HHHHHHHHHHHHcCCH--HHHHHHHHHHH----hhCCCCH
Q 002594 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----L--EAWGHLTQFYQDLANS--EKALECLQQVL----YIDKRFS 585 (903)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~--~~~~~la~~~~~~g~~--~~A~~~~~~al----~~~p~~~ 585 (903)
.++..+|.+..-.|++++|..+...+.+..... . .+....+.++..+|+. .+....+...- ...|-+.
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 467788999999999999999999988874432 2 2334457778888833 33333333322 2233333
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhHcc----CCCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHH
Q 002594 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSN--I-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (903)
Q Consensus 586 ~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 658 (903)
......+.++...-+++.+.......++. .|.. . -.++.++.++...|++++|...+.....+--+.......
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33344444444333466666666666554 2322 1 223489999999999999999999887765444222223
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHhhhhc
Q 002594 659 QCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (903)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~ 688 (903)
.+.++.-+.......|+...+..++.+..+
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 334443344444556777777777765443
No 235
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.001 Score=64.85 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYP----------EALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
+..+...|.-++..|+|.+|...|+.++.. .|..+ ..+.+.+.|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 667888999999999999999999988732 34433 346677777777788888888888888
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002594 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (903)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 484 (903)
...|.+..+++..|.+....-+..+|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 888888888888888877777778888888888877775433
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.008 Score=59.59 Aligned_cols=204 Identities=17% Similarity=0.202 Sum_probs=140.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHH
Q 002594 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469 (903)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 469 (903)
.....-..|+.+-..++..+|.+-.+|..+-.++..++ +..+-++++..+++.+|++..+|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34455678888888888888888888877766665543 5677788888888888888888888888888888877 778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHH
Q 002594 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG-----EYKKAEEAHLKA 543 (903)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~a 543 (903)
+....++..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~ 213 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK 213 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888877666666543222222 11 133445667777
Q ss_pred HHhCcccHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hhCCCCHHHHHHHHHHH
Q 002594 544 IQLDRNFLEAWGHLTQFYQD-LA--NSEKALECLQQVL-YIDKRFSKAYHLRGLLL 595 (903)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 595 (903)
+...|++..+|..|.-++.. .| .+..........+ ......+..+-.+..+|
T Consensus 214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 88888888888887777764 33 2333444444433 22223444444444444
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.62 E-value=0.00011 Score=52.96 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=38.8
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 002594 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (903)
Q Consensus 70 ~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~ 112 (903)
..+..+|.+|.++|++++|++.++++|+.+|++..++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4577899999999999999999999999999999999998863
No 238
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.61 E-value=0.17 Score=57.01 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHH-----
Q 002594 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK--AYHL----- 590 (903)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~----- 590 (903)
+....+|.-+...|+...|...|.++-. +..-..+|...+-+++|....+. ....+.. +.+.
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhh
Confidence 4566778888888888888888776532 22222344444444444333221 1111110 0000
Q ss_pred ----HHHHHHHCCCHHHHHH-------------HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcH
Q 002594 591 ----RGLLLHGLGQHKKAIK-------------DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (903)
Q Consensus 591 ----la~~~~~~g~~~eA~~-------------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~ 653 (903)
-..++-+.|-.++|+. .-+-+.+ ...++++..++..+...|++++|-+.|-.+++++.-+.
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 1122334444444444 3332222 23467889999999999999999999999999986553
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHhhhhccCCCcHHHH
Q 002594 654 EKFVLQCLAFYQKEIALYTAS-KINSEFCWFDIDGDIDPLFKEYW 697 (903)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~l~~a~~~~p~~~~~w 697 (903)
. |.......+. ....+.| +-++|...|- -+.+|....
T Consensus 1030 t-wcqavpsrfd--~e~ir~gnkpe~av~mfi----~dndwa~ae 1067 (1636)
T KOG3616|consen 1030 T-WCQAVPSRFD--AEFIRAGNKPEEAVEMFI----HDNDWAAAE 1067 (1636)
T ss_pred h-hhhcccchhh--HHHHHcCCChHHHHHHhh----hcccHHHHH
Confidence 2 2111111111 1122334 7888888884 355677663
No 239
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.60 E-value=0.027 Score=65.62 Aligned_cols=261 Identities=16% Similarity=0.047 Sum_probs=187.5
Q ss_pred ccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 002594 379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ 443 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 443 (903)
.+......+|.+++.- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.... ++..|+.+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3466667777777654 5899999999999771 1125668889999999853 67889999999887
Q ss_pred hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 002594 444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKEN 516 (903)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 516 (903)
.. ++.+.+.+|.++..-. ++..|.++|..|.... +..+.+.++.+|.. ..+...|..++.++.+.+ +
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 64 4667788898888765 6789999999998754 67888999998875 358899999999999987 4
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHH---HH-HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHH
Q 002594 517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AW-GHLTQFYQD----LANSEKALECLQQVLYIDKRFSKA 587 (903)
Q Consensus 517 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~---~~-~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 587 (903)
+.+...++.++..- ++++.+...+....+..-..+. ++ ......... ..+...+...+.++.. ..+..+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a 473 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA 473 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence 55555555554433 7777777766665554332211 11 111111111 1245566666666543 455778
Q ss_pred HHHHHHHHHHC----CCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccC
Q 002594 588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 588 ~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~p~ 651 (903)
...+|.+|..- .+++.|...|.++.... +...+++|.++.. .. ...|..+|.++.+.+..
T Consensus 474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCch
Confidence 88899888764 46999999999998877 8999999999874 23 78999999999887654
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.57 E-value=0.00011 Score=49.69 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.3
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 002594 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (903)
Q Consensus 70 ~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~ 102 (903)
..|+++|.+|..+|++++|+..|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357788888888888888888888888888863
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.55 E-value=0.0032 Score=68.74 Aligned_cols=112 Identities=15% Similarity=0.010 Sum_probs=95.6
Q ss_pred HHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002594 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
.......+.+...+..-+..+..+|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..|+.-.|..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 344556677777777777778889999999999999998877654 478899999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 482 (903)
..-++.++.++..++++.....+|..+.+..|..
T Consensus 283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred cccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 7778999999999999999999999999988854
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.024 Score=60.96 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCcHHH
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-AIQSNPSAGEA 451 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 451 (903)
+++....+=..|....+|+.-+++.+.+-.. -++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444455555555566666666655554433 23344555555555555 5666666666665 33334445566
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCC
Q 002594 452 WKRRGQARAAL---------GESVEAIQDLSKALEFEP 480 (903)
Q Consensus 452 ~~~la~~~~~~---------g~~~~A~~~~~~al~~~p 480 (903)
+..+|.+|... ...++|+..|.++.+.+|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 66666555432 123445555555555443
No 243
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00022 Score=76.55 Aligned_cols=106 Identities=22% Similarity=0.066 Sum_probs=89.9
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CChhHHhhHHHHHHHh---hcHHHHHHHHHHHHHhCCCChh
Q 002594 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ 104 (903)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~l---g~~~~Ai~~~~~Al~l~P~~~~ 104 (903)
..++.+.......+++..|-.+.+..||..|.+++... ....+|+|||.++++. |+.--|+.||..|+.++|...+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 34555556555678888999999999999999999998 5556689999999986 5888999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002594 105 AYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~~~~~~al~~~~ 134 (903)
||++++.++..++++.+|+.....+-.+.|
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999999976665544444
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.50 E-value=0.21 Score=53.76 Aligned_cols=95 Identities=8% Similarity=-0.073 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------H------
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------A------ 451 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~------ 451 (903)
+..+-...+-.++.+.-...+-..-+..|..+......|...++.+.+.+|++.+..-...-..... .
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 3333344455566666666666666677888888888899999999999999988776554222211 1
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 452 ---WKRRGQARAALGESVEAIQDLSKALEF 478 (903)
Q Consensus 452 ---~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (903)
-...+.++...|++.++...+++.+..
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 123577888999999999999988764
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0053 Score=62.44 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHH
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQA 458 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 458 (903)
..+.-+..+......|++.+|...|..++...|++.++...++.++...|+.+.|...+...-....+.. .........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4566677888899999999999999999999999999999999999999999999888776433222221 111111122
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHH
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYK 534 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~ 534 (903)
+.+.....+. ..+++.+..+|++.++.+.++..+...|+.+.|++.+-..++.+-. +..+...+-.++...|.-+
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 3333332222 3445556678888888888999999999999998888888777543 3445555555555555333
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.48 E-value=0.011 Score=63.42 Aligned_cols=81 Identities=16% Similarity=0.005 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHH
Q 002594 415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADIL 486 (903)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~~ 486 (903)
++....+-.+|....+|+.-+.+.+.+-.+ -++...+...+|.++.+ .|+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445555555666666666666666655444 33344555556666655 5666666666666 333344556666
Q ss_pred HHHHHHHHH
Q 002594 487 HERGIVNFK 495 (903)
Q Consensus 487 ~~la~~~~~ 495 (903)
..+|.+|-.
T Consensus 221 gL~GRIyKD 229 (374)
T PF13281_consen 221 GLLGRIYKD 229 (374)
T ss_pred HHHHHHHHH
Confidence 666665543
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00021 Score=51.53 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHH
Q 002594 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (903)
Q Consensus 589 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 625 (903)
..+|.+|...|++++|+..|+++++.+|+++.++..+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3333333334444444444444444344333333333
No 248
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.24 Score=53.70 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=107.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC------cH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CH
Q 002594 428 QRELEAAISDFTEAIQSNPS------AG--------EAWKRRGQARAALGESVEAIQDLSKALEF---EPN-------SA 483 (903)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~------~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~ 483 (903)
.|-+++|.++-++++....+ .. ..+-.+..+-.-.|++.+|++....+.+. .|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 45666777766666643211 11 12334455556677777777776666554 232 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------
Q 002594 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---------- 550 (903)
Q Consensus 484 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------- 550 (903)
.++..+|......+.++.|...|..+.+..... .....++|.+|...|+-+.--+.++. +.|.+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 456667777777777777777777777664322 22345567777776654443333332 23332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 614 (903)
..+++..|...+.++++.||...+.+.++.... ..-.+..+|.+....|+..++.....-++.+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 345556666667777777777777777765421 1223455677777777777777766666654
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.36 E-value=0.4 Score=53.78 Aligned_cols=259 Identities=10% Similarity=0.058 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 002594 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR-AALGESVEAIQDLSKA 475 (903)
Q Consensus 397 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 475 (903)
.+.+...|...|...|.....|...|..-.+.|..+.+.+.|++++.--|-..+.|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 366777788888899999999999999999999999999999999999998888876654443 3457778888888998
Q ss_pred HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHH-HHH-
Q 002594 476 LEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----------------------SAYTYLGL-ALS- 528 (903)
Q Consensus 476 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~-~~~- 528 (903)
......+ ...|-.+-......+++..-...|++.++.--... +....+.. +..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 8876543 23343333333445555555555555544311100 00000000 000
Q ss_pred ----------------------HcCCHHHHHHHHHHHHHh--------------------------------CcccHHHH
Q 002594 529 ----------------------SIGEYKKAEEAHLKAIQL--------------------------------DRNFLEAW 554 (903)
Q Consensus 529 ----------------------~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~ 554 (903)
..+.++++...+.+...+ ++.....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 011122222222221111 11224566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc-CCCCHHHHHHHHHHHHHcC
Q 002594 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIECLYLRASCYHAIG 633 (903)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g 633 (903)
......-...|+++...-.|++++.-.....+.|...+.-....|+.+-|-..+.++.+. .|..+.....-+.+-...|
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 667777788999999999999999888888899999999999999999999888888776 4667888888899999999
Q ss_pred CHHHHHHHHHHHHhhccCcHHH
Q 002594 634 EYREAIKDYDAALDLELDSMEK 655 (903)
Q Consensus 634 ~~~~A~~~~~~al~l~p~~~~~ 655 (903)
++..|...+++...-.|+....
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhhh
Confidence 9999999999999888887663
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.36 E-value=0.00017 Score=48.50 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=20.6
Q ss_pred HHHhHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (903)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 639 (903)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.27 E-value=0.00052 Score=46.20 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=23.4
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 002594 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (903)
Q Consensus 70 ~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~ 102 (903)
..++.+|.+++.+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 346677777777777777777777777777764
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.066 Score=62.57 Aligned_cols=232 Identities=15% Similarity=0.111 Sum_probs=126.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (903)
..|.+....+-|++|..+|++.- -+..+... .....+..+.|.++.+++ +.+.+|..+|.+....|..
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCch
Confidence 35677778888999988887531 11111111 112234444444444443 2345555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------CCCCH
Q 002594 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----------------------------DKENK 517 (903)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------------------~p~~~ 517 (903)
.+|++.|-++ +++..|.....+..+.|.|++-+.++.-+-+. .|+.+
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence 5555555443 34444555555555555555555555444332 12221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------
Q 002594 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--------------- 582 (903)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------- 582 (903)
. ....|.-++..+.|+.|.-+|.. ..-|..++..+..+|+|..|....+++-....
T Consensus 1196 ~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1196 N-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred h-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence 1 22344445555555555555433 34466677777777888777777776632110
Q ss_pred ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 583 ----------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 583 ----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
-+++-+-.+...|...|-+++-+..++.++-+...+...+..+|.+|.+- ++++-.++++-
T Consensus 1267 lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1267 LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 01223445666677778888888888888877776667777777776653 34555555443
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.25 E-value=0.47 Score=55.65 Aligned_cols=266 Identities=16% Similarity=0.022 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 002594 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-- 448 (903)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 448 (903)
++...+..|.......++++|..++.++...-+. .+......|.+....|+++.|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4666778888889999999999999988765433 23455667888889999999999999999887765
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHcCC--HHHHHHHHHHH----HHhC
Q 002594 449 ---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN----S--ADILHERGIVNFKFKD--FNAAVEDLSAC----VKLD 513 (903)
Q Consensus 449 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~--~~~A~~~~~~a----l~~~ 513 (903)
..++..+|.+..-.|++++|..+...+.+.... . ..+....+.++...|+ +.+....+... +...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 456778889999999999999999988877332 1 2344456778888883 33333333322 2223
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 002594 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-- 584 (903)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 584 (903)
|.........+.++...-+++.+.......++.. |.. .-+++.++.++...|+.++|...+........+.
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 4433333444444444334666666665555542 222 2233588999999999999999988887553221
Q ss_pred -H----HHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 585 -S----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 585 -~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
. .++.-.......+|++.+|.....+...-+..+ ...+.+....-..+|-..+|.......
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l 723 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDEL 723 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHH
Confidence 1 112222334456899999888887743321111 122333334444455555555444433
No 254
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.24 E-value=0.64 Score=55.24 Aligned_cols=286 Identities=19% Similarity=0.147 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCHH
Q 002594 398 ASAISIFDQILKEDPM----YPEALIGRGTARA-FQRELEAAISDFTEAIQSNPS--AG----EAWKRRGQARAALGESV 466 (903)
Q Consensus 398 ~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 466 (903)
..|+.+++.+++..+- .+.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4566667666642221 2345667777766 567777777777777665532 22 23445566666666665
Q ss_pred HHHHHHHHHHHhCCC---CH-HHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHH
Q 002594 467 EAIQDLSKALEFEPN---SA-DILHER--GIVNFKFKDFNAAVEDLSACVKLD--KENKSA----YTYLGLALSSIGEYK 534 (903)
Q Consensus 467 ~A~~~~~~al~~~p~---~~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~ 534 (903)
|+..++++++.... .. ...+.+ ...+...+++..|++.++...... ..++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777777765443 11 111111 222223367777777777776654 234332 222345555566666
Q ss_pred HHHHHHHHHHHhCc----------ccHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---hh---CC-------C------
Q 002594 535 KAEEAHLKAIQLDR----------NFLEAWGHLTQ--FYQDLANSEKALECLQQVL---YI---DK-------R------ 583 (903)
Q Consensus 535 ~A~~~~~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~---~p-------~------ 583 (903)
++++.++++..... ....++..+-. ++...|+++.+...+++.- .. .+ +
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 77777666643221 11334433333 3345566555555544331 11 11 0
Q ss_pred -----------C------------HHHHHHHHHHHHHCCCHHHHHHHHHHhHccC-------CCC---------------
Q 002594 584 -----------F------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSN--------------- 618 (903)
Q Consensus 584 -----------~------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~--------------- 618 (903)
. .-+|..-|......+..+.|.++++++++.- +..
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 0 0123333555566676667777777776531 110
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHHHHHhhcHHHHHHHHh
Q 002594 619 ----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME--KFVLQCLAFYQKEIALYTASKINSEFCWFD 684 (903)
Q Consensus 619 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 684 (903)
..+.+..+.+..-.+++..|......+.......+. ........+|-.|..+...|+++.|...|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 124556777888899999999999888766433222 123345678888888888999999999996
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.24 E-value=0.23 Score=52.52 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhh
Q 002594 650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (903)
Q Consensus 650 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~ 687 (903)
|-..++........++.|...|..++|..|..+|+.++
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34444444445667888999999999999999998655
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.24 E-value=0.00061 Score=45.90 Aligned_cols=32 Identities=38% Similarity=0.728 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56777777777777777777777777777775
No 257
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.20 E-value=0.24 Score=56.01 Aligned_cols=315 Identities=17% Similarity=0.106 Sum_probs=168.1
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------h--------CCCCHHHHHHHHH--
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK------------E--------DPMYPEALIGRGT-- 423 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------~--------~p~~~~~~~~la~-- 423 (903)
....+-+.....|.....|..++...+..|+.--|..+|..+-. + ..+-...|-..+.
T Consensus 462 ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~la 541 (1636)
T KOG3616|consen 462 RATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLA 541 (1636)
T ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHH
Confidence 33455566777888888899999999999988888877754321 1 1111122222222
Q ss_pred -----------HHHHcCCHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHH-------------HcCCHHHH
Q 002594 424 -----------ARAFQRELEAAISDFTEAIQS-----------NPSAGEAWKRRGQARA-------------ALGESVEA 468 (903)
Q Consensus 424 -----------~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~-------------~~g~~~~A 468 (903)
+++.++..++|+-.|+..-+- .|.........-+.++ ..|+--.|
T Consensus 542 il~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laa 621 (1636)
T KOG3616|consen 542 ILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAA 621 (1636)
T ss_pred HHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHH
Confidence 344455666666666543221 1211111111111111 23344445
Q ss_pred HHHHHHHH------HhCCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh----C
Q 002594 469 IQDLSKAL------EFEPN-------------------SADILHERGIVNFKFKDFNAAVEDLSA------CVKL----D 513 (903)
Q Consensus 469 ~~~~~~al------~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----~ 513 (903)
+.+|-++- ...-+ ..+.|-.-|.++.+..++++|+++|++ ++++ .
T Consensus 622 iqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf 701 (1636)
T KOG3616|consen 622 IQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF 701 (1636)
T ss_pred HHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC
Confidence 55554321 11000 123566778999999999999999875 3443 2
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------c------------cc-HHHHHHHHHHHHHcCCH
Q 002594 514 KENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLD------------R------------NF-LEAWGHLTQFYQDLANS 567 (903)
Q Consensus 514 p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------p------------~~-~~~~~~la~~~~~~g~~ 567 (903)
|... ..-...|.-+...|+++.|+..|-.+-.+- | +. ...|-.++.-|...|+|
T Consensus 702 p~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDF 781 (1636)
T ss_pred cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhH
Confidence 3322 223345777788888888887765432110 0 00 12234456677777888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----
Q 002594 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD---- 643 (903)
Q Consensus 568 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~---- 643 (903)
+.|.++|.++- ....-...|-+.|++.+|.+.-.++.... .....|...+.-+...|+|.+|...|-
T Consensus 782 e~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e-~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 782 EIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPE-ATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCch-hHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 88887776642 22223445667777777777766654321 123455666666667777666665542
Q ss_pred --HHHhhccC---cHHH--H------HHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhcc
Q 002594 644 --AALDLELD---SMEK--F------VLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (903)
Q Consensus 644 --~al~l~p~---~~~~--~------~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~ 689 (903)
+++.+... +.+. + -.+.......+..+...|++..|...|-.++++
T Consensus 853 p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 853 PDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred chHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 22222110 0000 0 001123344456666677777777777666553
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.19 E-value=0.00086 Score=45.13 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
+.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.17 E-value=0.18 Score=58.88 Aligned_cols=274 Identities=17% Similarity=0.066 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 002594 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG-- 463 (903)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 463 (903)
....|..+++.+-+. .+..+...+|.++..- .+.+.|+.+|..+... ...++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356778888777543 4677888888888765 5899999999999771 1124567888999998853
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 002594 464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY 533 (903)
Q Consensus 464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~ 533 (903)
++..|+.+|.++-... ++.+.+.+|.++..-. ++..|.++|..+... .+..+.+.++.++.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 7788999999998775 5677888898888765 678999999998765 467888889988875 3578
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----CCCHHHH
Q 002594 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHG----LGQHKKA 604 (903)
Q Consensus 534 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~~eA 604 (903)
..|..+++++.+.. .+.+...++.++... +.++.+...+....+..-..+. .+......... ..+...+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 99999999999887 455555555554432 7777766666555443322111 11111111111 1245666
Q ss_pred HHHHHHhHccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHH----hhcH
Q 002594 605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT----ASKI 676 (903)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~----~~~~ 676 (903)
...+.++.. ..++.+...+|.+|..- .+++.|...|.++.... .. ..++.|..+.. .. +
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~-------~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQ-------ALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hH-------HHhhhhhHHhcCcCcch-h
Confidence 777776654 34578888999988765 35999999999998766 33 33333333211 22 5
Q ss_pred HHHHHHHhhhhccC
Q 002594 677 NSEFCWFDIDGDID 690 (903)
Q Consensus 677 ~~A~~~l~~a~~~~ 690 (903)
..|..+|+++...+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 66777776665544
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.02 Score=58.34 Aligned_cols=149 Identities=18% Similarity=0.125 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHH
Q 002594 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER--GIV 492 (903)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~ 492 (903)
.+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-..... ....... ...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHH
Confidence 3444556667778899999999999999999999999999999999999999988887654222111 1111111 122
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcC
Q 002594 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565 (903)
Q Consensus 493 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 565 (903)
+.+.....+. ..+++.+..+|++..+-+.+|..+...|+.++|.+.+-..++.+... ..+...+-.++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333222221 23455566788888888888888888888888888888877765432 344444444444444
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.16 E-value=0.27 Score=51.95 Aligned_cols=122 Identities=12% Similarity=0.007 Sum_probs=71.3
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----C---Cc-------
Q 002594 392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----P---SA------- 448 (903)
Q Consensus 392 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p---~~------- 448 (903)
..+|+++.|..++.++-... |+. ...+++.|......+ +++.|...++++.++- + ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45778888888888776543 221 245667777777777 7888888777777651 1 10
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 513 (903)
..++..++.+|...+.++ +|...++.+-...|+.+.++...-.+....++.+.+.+.+.+++...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 234555666666655433 34444444444455555555444444444566666666666666543
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.13 Score=58.68 Aligned_cols=176 Identities=15% Similarity=0.026 Sum_probs=124.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH------HHHHHHHHH----HcCCHHHHHHH
Q 002594 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SA------YTYLGLALS----SIGEYKKAEEA 539 (903)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~------~~~la~~~~----~~g~~~~A~~~ 539 (903)
.|.-++.+-|. ....+..+.--.|+-+.++..+.++.+...-.. -+ |+.....+. .....+.|.+.
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 44445555552 222333333445888888888888876322111 11 111111111 24567889999
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 540 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
+....+..|+..-..+..|.++...|+.++|++.|++++...... .-.++.+|.++..+.+|++|..++.+..+.+
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988543322 2457889999999999999999999999876
Q ss_pred CCC-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhc
Q 002594 616 PSN-IECLYLRASCYHAIGEY-------REAIKDYDAALDLE 649 (903)
Q Consensus 616 p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~l~ 649 (903)
.-. .-..+..|.|+...|+. ++|.+.|.++-.+.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 553 44566788999999999 77777777765543
No 263
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.08 E-value=1.1 Score=53.31 Aligned_cols=263 Identities=12% Similarity=0.052 Sum_probs=174.2
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-
Q 002594 380 SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDP--MYP----EALIGRGTARAFQRELEAAISDFTEAIQSNPS---A- 448 (903)
Q Consensus 380 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~- 448 (903)
.+..++.+|.+++ ...+++.|..++++++.+.. +.. .+.+.++.++.+.+... |...++++++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4677889999988 67899999999999987653 322 34566788888887777 99999999986544 2
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 002594 449 GEAWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNAAVEDLSACVKLDK------ 514 (903)
Q Consensus 449 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 514 (903)
....+.+ ...+...+++..|++.++.+.... ..++.+ ....+.++...+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2222222 223333479999999999998875 344432 33346667777888889888888744321
Q ss_pred C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---Cc-------c------------------c-------
Q 002594 515 E----NKSAYTYLGL--ALSSIGEYKKAEEAHLKA---IQL---DR-------N------------------F------- 550 (903)
Q Consensus 515 ~----~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~---~p-------~------------------~------- 550 (903)
. ...++..+-. ++...|+++.+...+++. ++. .+ + .
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 1 1234443333 455677776666554443 221 11 0 0
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------C----------------HHHHHHHHHHHHHCCC
Q 002594 551 ----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----------F----------------SKAYHLRGLLLHGLGQ 600 (903)
Q Consensus 551 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------~----------------~~~~~~la~~~~~~g~ 600 (903)
.-+|..-|......+..++|.+++++++..-.+ . ....+..+.+..-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 112233355566677777888888888753111 0 1124456777788999
Q ss_pred HHHHHHHHHHhHccC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 601 HKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAIKDYD 643 (903)
Q Consensus 601 ~~eA~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (903)
+..|......+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999998888776542 22 36789999999999999999999998
No 264
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.04 E-value=0.00055 Score=70.30 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (903)
..+...+..|.+++|++.|..++.++|..+..+..++.+++.++....|+..+..++.++|+...-|...+.+...+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 44666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 002594 466 VEAIQDLSKALEFEP 480 (903)
Q Consensus 466 ~~A~~~~~~al~~~p 480 (903)
++|..++..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988764
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.02 E-value=0.027 Score=61.89 Aligned_cols=117 Identities=12% Similarity=-0.030 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--EAWKRRGQARAALGESVEAIQDLSKALEFE 479 (903)
Q Consensus 402 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 479 (903)
.+...+++..|.+...+..-+..+...|+..+|..++..++-..|... .++..+|.++.+.|...+|--.+..|+.-.
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 345566777777665555555555678999999999999999887653 467889999999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002594 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (903)
Q Consensus 480 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (903)
|.....++.++.++..++.+...+..|..+.+..|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 877778999999999999999999999999999887643
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0048 Score=63.22 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
+..+-..|..|+...+|..|+..|.+.|+..-. ++..|.++|.+.+..|+|..|+..+.+++.++|.+..++++-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 556677888888889999999999988876433 3456788888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Q 002594 457 QARAALGESVEAIQDLSKALEFE 479 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~ 479 (903)
.|+..+.++.+|...++..+.++
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 88888888888888888776554
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0074 Score=57.45 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=72.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCChhH----HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHcCCH
Q 002594 45 KLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-AYILKGCAFSALGRK 119 (903)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~-a~~~lG~~~~~lg~~ 119 (903)
.++.++++++|+..++.++....+..+ -.++|.+.+++|.+++|++.++..- ++++.. .--++|.+++..|+.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCch
Confidence 368899999999999999977644333 4578999999999999999887633 344332 466789999999999
Q ss_pred HHHHHHHHHHHhhccCC
Q 002594 120 EEALSVWEKGYEHALHQ 136 (903)
Q Consensus 120 ~eA~~~~~~al~~~~~~ 136 (903)
++|...|++++++.+.+
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999998877333
No 268
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.97 E-value=0.012 Score=55.63 Aligned_cols=85 Identities=28% Similarity=0.271 Sum_probs=68.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc-CCh----------------------hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 002594 45 KLCSLRNWSKAIRILDSLLAQS-YEI----------------------QDICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (903)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~----------------------~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~ 101 (903)
.....++.+.++..+.+++.+. ..+ .....++..+...|++++|+..|++++.++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~ 94 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY 94 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Confidence 3456789999999999999886 111 00234566788899999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 102 LLQAYILKGCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 102 ~~~a~~~lG~~~~~lg~~~eA~~~~~~a 129 (903)
+-.+|..+-.+|..+|+..+|+..|++.
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999999999999999998
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.088 Score=61.59 Aligned_cols=196 Identities=20% Similarity=0.206 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (903)
Q Consensus 395 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (903)
++.+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+....|.|++-+.++.-
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4445554444443 33455555555555555555555555443 3444444555555555555555555444
Q ss_pred HHHh----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002594 475 ALEF----------------------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (903)
Q Consensus 475 al~~----------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 526 (903)
+-+. .|+.+ -....|.-++..+.|+.|.-+|.. ..-|..++..
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 4332 23222 223455666666777766666643 4556778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCc-------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002594 527 LSSIGEYKKAEEAHLKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (903)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (903)
+..+|+|..|....+++-...- -+++-+-.+...|...|-+++-+.+++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 8888999888888777643210 013445567778899999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002594 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (903)
Q Consensus 582 p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 610 (903)
..+...+..+|.+|.+- ++++-.++++-
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 88888888888888664 45555555543
No 270
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.91 E-value=0.035 Score=48.08 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=70.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc---CCh----------hHHhhHHHHHHHhhcHHHHHHHHHHHH-------HhCCC
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQS---YEI----------QDICNRAFCYSQLELHKHVIRDCDKAL-------QLDPT 101 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~----------~~~~~ra~~~~~lg~~~~Ai~~~~~Al-------~l~P~ 101 (903)
.+-+-+..|-|++|..-+.+|++.. |.. -++..++.++..+|+|++++...++|| +++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 4455678899999999999998776 221 115578889999999999999999998 45544
Q ss_pred ----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 102 ----LLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (903)
Q Consensus 102 ----~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~ 132 (903)
++.+.+.+|.++..+|+.++|+..|+.+-++
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5668999999999999999999999999544
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.90 E-value=0.25 Score=52.84 Aligned_cols=190 Identities=20% Similarity=0.131 Sum_probs=103.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 002594 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FK 497 (903)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 497 (903)
...+++..|...+.++-.. .+..+...++.+|..- .+..+|..+|+.+. ...++...+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3456677777777776652 2235555666665543 34556666666333 23345566666666655 33
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 498 DFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (903)
++.+|..+|+++....-.. ..+.+.++.++..-. ...+. ..+...|...|.+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~ 180 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRK 180 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHH
Confidence 5566666666655553322 122344444443321 00000 0011356666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcC---------------CHHH
Q 002594 577 VLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYRE 637 (903)
Q Consensus 577 al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~ 637 (903)
+-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~ 255 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ 255 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence 55443 56677777766644 3377788888888777665 67777777 555555 5566
Q ss_pred HHHHHHHHHhhccC
Q 002594 638 AIKDYDAALDLELD 651 (903)
Q Consensus 638 A~~~~~~al~l~p~ 651 (903)
|...+..+....+.
T Consensus 256 a~~~~~~~~~~~~~ 269 (292)
T COG0790 256 ALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHcCCh
Confidence 66666666555443
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.07 Score=51.04 Aligned_cols=119 Identities=22% Similarity=0.089 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Q 002594 535 KAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDL 608 (903)
Q Consensus 535 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~ 608 (903)
+......+....++... -+-..++..+...+++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444455555554442 334567888899999999999999988654332 235678899999999999999988
Q ss_pred HHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
+...... -.+..-...|.++...|+.++|+..|+++++..++.+.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 7543321 12345667899999999999999999999999866544
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.028 Score=52.97 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 586 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999999999999999999999999999887543
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.83 E-value=0.57 Score=50.00 Aligned_cols=168 Identities=20% Similarity=0.066 Sum_probs=115.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---
Q 002594 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA--- 461 (903)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 461 (903)
......+++..|...+..+-. -..+.+...++.++... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 344566788888888888765 23346777788777654 46788999998443 45667888889998887
Q ss_pred -cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 002594 462 -LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS--- 529 (903)
Q Consensus 462 -~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 529 (903)
..+..+|..+|.++.+..... ....+.++.+|..-. +...|+..|.++.... ++.+...+|.+|..
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 458999999999998875433 344777787776642 2236777777766654 56667777766644
Q ss_pred -cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 002594 530 -IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (903)
Q Consensus 530 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 565 (903)
..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3467777777777776655 66666666 444444
No 275
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.13 Score=55.54 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=89.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002594 438 FTEAIQSNPSAGEAWKRRGQARAALG------------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (903)
Q Consensus 438 ~~~al~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 505 (903)
|++.+..+|.+..+|..+.......- -.+.-+.+|++|++.+|++..++..+-.+..+..+.++..+.
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44444555555555544443332221 134456677777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002594 506 LSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (903)
Q Consensus 506 ~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 582 (903)
+++++..+|.+...|..+-..... .-.++.....|.+++..-....... .... .....++.
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~---------~~~~-~~~~~~e~------ 151 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR---------MTSH-PDLPELEE------ 151 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc---------cccc-cchhhHHH------
Confidence 777777777777666544333322 2345566666666554321110000 0000 00000000
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
....++..+...+...|..+.|+..++..++++
T Consensus 152 ~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 152 FMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 112456667777788888888888888888874
No 276
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.28 Score=54.22 Aligned_cols=250 Identities=13% Similarity=0.108 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLS 507 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 507 (903)
+...+.+.......|+++......+..+...|+.+.|+..++..+. +.- .-.++.+|.++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555556667888888888888888888888888888877766 221 2356677888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 508 ACVKLDKENKSAYTYLG-LALSS--------IGEYKKAEEAHLKA---IQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (903)
Q Consensus 508 ~al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (903)
.....+.-..-.|.+++ .|+.. .|+-+.|-.+++.. +...|.+..+-.. -..+|.++-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhc
Confidence 87776655555555554 33322 22333333333322 2222222111000 0111221111
Q ss_pred HHHhhCCCCHH--HHHHHHHHHHH--CCCHHHHHHHHHHhH---cc-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 576 QVLYIDKRFSK--AYHLRGLLLHG--LGQHKKAIKDLSSGL---GI-DPSNI-ECLYLRASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 576 ~al~~~p~~~~--~~~~la~~~~~--~g~~~eA~~~~~~al---~~-~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 646 (903)
+.- .++.... .++.++.++.. ....++.. -++... .. ++++. --++.+|.++..+|+...|..+|..++
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 12333333322 11222222 111111 11 33322 245678999999999999999999988
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHhhhhccCCCcH
Q 002594 647 DLELDSMEKFVLQCLAFYQKEIALYTASK-INSEFCWFDIDGDIDPLFK 694 (903)
Q Consensus 647 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~l~~a~~~~p~~~ 694 (903)
+..-....-.+....++|.+|..++..+. +.++..++.+|.+...++.
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 54322222233445689999999999988 9999999999988765544
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.54 E-value=0.005 Score=41.33 Aligned_cols=32 Identities=34% Similarity=0.682 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777888888888888888888888887774
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.46 E-value=0.19 Score=54.21 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=88.6
Q ss_pred HHHHHhhccCCccHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002594 368 FCVTRISKSKSISVDFRLSRGIAQVNEGK------------YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (903)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 435 (903)
..+.+.+..+|.+++.|+.+....-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34556677778888888777755443322 345556666677667766666666666666666666666
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 436 SDFTEAIQSNPSAGEAWKRRGQARAA---LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 512 (903)
.-+++++..+|.+...|..+-..... .-.+......|.+++..-....... .... .....++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~---------~~~~-~~~~~~e----- 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR---------MTSH-PDLPELE----- 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc---------cccc-cchhhHH-----
Confidence 66666666666666665544433322 2235555555555554311000000 0000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (903)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (903)
..-..++..+...+...|..+.|+..++..++.+
T Consensus 151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0012345556666777777777777777777765
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.42 E-value=0.087 Score=57.52 Aligned_cols=172 Identities=16% Similarity=-0.064 Sum_probs=99.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 002594 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (903)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 555 (903)
+..+|-+.+.+..++.++..+|++..|.+.+++|+-.........+..-..-...|.. . +.-....+.....+.+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r--L~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R--LDYRRPENRQFFLALF 107 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c--cCCccccchHHHHHHH
Confidence 4556777777777777777777777777777776532111000000000000000000 0 0000000111234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHH-HHHHHHHCCCHHHHHHHHHHhHccCC-----CCHHHHHHHHHH
Q 002594 556 HLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDP-----SNIECLYLRASC 628 (903)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~ 628 (903)
.....+.+.|-+..|.++.+-.+.++|. ++-.... +-....+.++|+--+..++....... .-|...+..+.+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 5666777788888888888888888887 5544333 33334566777766666665544211 134677788888
Q ss_pred HHHcCCH---------------HHHHHHHHHHHhhccCc
Q 002594 629 YHAIGEY---------------REAIKDYDAALDLELDS 652 (903)
Q Consensus 629 ~~~~g~~---------------~~A~~~~~~al~l~p~~ 652 (903)
+..+++. ++|...+.+|+...|.-
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 8888888 89999999999998854
No 280
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.42 E-value=2.1 Score=47.47 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=56.4
Q ss_pred HHHHhccC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 60 DSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (903)
Q Consensus 60 ~~ai~~~~-~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~ 131 (903)
.+-|+.+| +...|+.+-.-+.. ..++++..+++.-+...|..+.++.......++..+|+.-.+.|.++|.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44567774 44446655544433 4899999999999999999999999999999999999999999999964
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=1.4 Score=57.35 Aligned_cols=272 Identities=14% Similarity=0.070 Sum_probs=163.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCCH
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGES 465 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~ 465 (903)
+-......|+++.|..+|+++++.+|+....+...-...+..|.+...+...+-.....++...-+..++ .+....+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 3445566789999999999999999988877877777888888888888877766655555544444433 233555555
Q ss_pred HHHHHHHH-------------H-HHHhCCCCHHHH-HHHHHH-------H---HHcCCHHHHHHHHHHHHHh--------
Q 002594 466 VEAIQDLS-------------K-ALEFEPNSADIL-HERGIV-------N---FKFKDFNAAVEDLSACVKL-------- 512 (903)
Q Consensus 466 ~~A~~~~~-------------~-al~~~p~~~~~~-~~la~~-------~---~~~g~~~~A~~~~~~al~~-------- 512 (903)
+.-..+.. + .+.....+.-.. ..+... + ...|-|..+.++.-++..+
T Consensus 1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444422 0 011111111100 000000 0 0011222333322222110
Q ss_pred -----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----cccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 513 -----DKE-----NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---D----RNFLEAWGHLTQFYQDLANSEKALECLQ 575 (903)
Q Consensus 513 -----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (903)
.++ +..-|.+....-....+..+-+-.+++++-. + ....+.|...|++....|+++.|..++-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111 1122333332222223344555555554422 2 2337899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC-----------------HHHHHHHHHHHHHcCCH--H
Q 002594 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-----------------IECLYLRASCYHAIGEY--R 636 (903)
Q Consensus 576 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~--~ 636 (903)
.|.+.. -+.++...|..+...|+...|+..+++.++.+-.+ ..+.+.++......|++ .
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 998776 46889999999999999999999999999653211 12344555555666664 4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHH
Q 002594 637 EAIKDYDAALDLELDSMEKFVLQC 660 (903)
Q Consensus 637 ~A~~~~~~al~l~p~~~~~~~~~~ 660 (903)
+-+++|..+.++.|...+.++.++
T Consensus 1773 ~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHHHHHcccccCceeeHH
Confidence 567789999999996655555554
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.37 E-value=0.0054 Score=41.17 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=17.0
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 002594 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (903)
Q Consensus 72 ~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~ 101 (903)
++.+|.+|.++|++++|+..++++++++|+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445555555555555555555555555553
No 283
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.23 E-value=0.28 Score=53.55 Aligned_cols=168 Identities=14% Similarity=0.013 Sum_probs=81.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---H
Q 002594 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---D 484 (903)
Q Consensus 408 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 484 (903)
+..+|.+.+++..++.++..+|+...|.+++++|+-.........+..-..-...|.. .--| ..+.|. .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHHHH
Confidence 4566777777777777777777777777777766532110000000000000000000 0000 011121 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHHH
Q 002594 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHL 557 (903)
Q Consensus 485 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 557 (903)
+.+.....+.+.|-+..|+++.+-.+.++|. ++- +.+.+=....+.++++--+..++....... .-+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3344455555666666666666666666665 443 233333334445555555555544333111 123445556
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 002594 558 TQFYQDLANS---------------EKALECLQQVLYIDKR 583 (903)
Q Consensus 558 a~~~~~~g~~---------------~~A~~~~~~al~~~p~ 583 (903)
+.++...++. +.|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 6666666666 7777778887777764
No 284
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.23 E-value=0.016 Score=43.16 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 002594 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (903)
Q Consensus 71 ~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~ 112 (903)
.++.+|.+++++|+|++|...++.+|+.+|++.+|.-+...+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999887766554
No 285
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.21 E-value=0.88 Score=49.05 Aligned_cols=239 Identities=10% Similarity=-0.062 Sum_probs=126.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002594 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (903)
Q Consensus 404 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 483 (903)
+++++...|-.++.|+.........++-+.|+....+++...|. ....++.+|...++-++...+|+++++.-.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~--- 364 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK--- 364 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH---
Confidence 45555555666666666666666666666666666665554444 444555555555555555555555443100
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Q 002594 484 DILHERGIVNFK---FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (903)
Q Consensus 484 ~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 560 (903)
--+..+..-.. -|+++..-+++-+-.. ...-++..+-....+..-.+.|...|-++-+..-....++..-|.+
T Consensus 365 -r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~ 440 (660)
T COG5107 365 -RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI 440 (660)
T ss_pred -HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH
Confidence 00000000000 1222111111111110 1112222222233333446666777766655432223333333332
Q ss_pred -HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC--HHHHHHHHHHHHHcCCHHH
Q 002594 561 -YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYRE 637 (903)
Q Consensus 561 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~ 637 (903)
+...|++.-|-..|+-.+...|+.+......-..+...++-..|...|+++++.-.+. ...|-.+-..-..-|+...
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred HHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHH
Confidence 4457888888888888888888877666666666777788888888888776653332 3455555555556677777
Q ss_pred HHHHHHHHHhhccCc
Q 002594 638 AIKDYDAALDLELDS 652 (903)
Q Consensus 638 A~~~~~~al~l~p~~ 652 (903)
+...=++..++.|..
T Consensus 521 v~sLe~rf~e~~pQe 535 (660)
T COG5107 521 VYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHHHcCcH
Confidence 776666666666653
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.19 E-value=0.2 Score=50.04 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE 477 (903)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 477 (903)
.+.++|+..|++++++.+... .++..+..+++.++++++-++.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 467778888888887776653 3566666777777777777777777654
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=1.5 Score=49.78 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 528 (903)
..++.++|..+..+..+++|.++|.+.-. ..++..+++....|++- +.+...-|++...+-.+|..+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHH
Confidence 35666677777666677777776665421 12334555555555443 2333345666667777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 608 (903)
..|.-++|.+.|.+.- .|.- -......++++.+|.++.++-- -|.........+.-+...++..+|++..
T Consensus 864 svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~ 933 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKD 933 (1189)
T ss_pred hhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHh
Confidence 7777777777665431 1111 0122334556666666544321 1222222333344455566777777766
Q ss_pred HHh
Q 002594 609 SSG 611 (903)
Q Consensus 609 ~~a 611 (903)
+++
T Consensus 934 Rka 936 (1189)
T KOG2041|consen 934 RKA 936 (1189)
T ss_pred hhc
Confidence 665
No 288
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.011 Score=61.44 Aligned_cols=115 Identities=16% Similarity=0.046 Sum_probs=94.3
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------CC--h-------hHHhhHHHHHHHhhcHHHH
Q 002594 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------YE--I-------QDICNRAFCYSQLELHKHV 88 (903)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-----------~~--~-------~~~~~ra~~~~~lg~~~~A 88 (903)
.+..+......|..+++.|++++|+.|..-|.++.+.. ++ + ..+.+.+.|-++++.+..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 34445555666677889999999999999998876432 11 1 1155788999999999999
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHH
Q 002594 89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (903)
Q Consensus 89 i~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~l 143 (903)
+..+..++..+++..++|+++|.++..+.++++|+..++.+....|..+.-.+.+
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999988888776654444
No 289
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.3 Score=54.01 Aligned_cols=244 Identities=16% Similarity=0.053 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKA 475 (903)
Q Consensus 398 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (903)
....+.+.......|.++...+..+..+...|+.+.|+..++..+...-. ..-.++.+|.++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555666778999999999999999999988899999988871111 1345678889999999999999999999
Q ss_pred HHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 476 LEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSAC---VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (903)
Q Consensus 476 l~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (903)
...+.-..-.|..++ .|++. .|+-+.|-.+++.. +...|.+..+-. .-..+|.++-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhccc
Confidence 888765555555555 44432 23444444444332 222222211100 0011222221111
Q ss_pred HHhCcccHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHhHcc
Q 002594 544 IQLDRNFLE--AWGHLTQFYQD--LANSEKALECLQQVLY---I-DKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (903)
Q Consensus 544 l~~~p~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al~---~-~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~ 614 (903)
- .++..+. .++.++.++.. ....++.. -++.... . ++++. --+..+|.++..+|+...|..+|..+++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1111111 12333333321 12222222 1122221 1 22222 23667899999999999999999988843
Q ss_pred ---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhccCc
Q 002594 615 ---DPS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELDS 652 (903)
Q Consensus 615 ---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~l~p~~ 652 (903)
... .|.++|.+|..|..+|. ..+|.+++.+|-+...++
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 111 26899999999999999 999999999998876443
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.89 E-value=0.49 Score=53.41 Aligned_cols=237 Identities=14% Similarity=0.020 Sum_probs=147.6
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---------EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
...+..|..+|...+..-.++.|...|-++-. .|.-. .--...|.+-..-|++++|.+.|-.+-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 34578888888888888888888877766532 11110 001234445555688888888876543211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 526 (903)
....++...|++-...++++..-.-.. ....++.++|..+..+..|++|.++|...-. .-++..+
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ec 831 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIEC 831 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHH
Confidence 122455667777766666654321111 1246888999999999999999999976532 2356677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002594 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (903)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 606 (903)
++...+|++-..+ ...-|++...+-.+|.++...|--++|.+.|-+.- .|. + --..+..++++.+|.+
T Consensus 832 ly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a---Av~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 832 LYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A---AVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H---HHHHHHHHHHHHHHHH
Confidence 7787777765443 33457778888889999999999999998886532 221 1 1123455677778877
Q ss_pred HHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
..++-- -|.-....-..+.-+...++.-+|++.++++
T Consensus 900 laq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 900 LAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 665431 1222222333444455667777777777666
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.88 E-value=0.012 Score=40.18 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~~~~~~al~~ 132 (903)
++..+|.+|..+|++++|+..|+++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5778888999999999999999887543
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.86 E-value=1.5 Score=47.41 Aligned_cols=243 Identities=10% Similarity=-0.007 Sum_probs=161.7
Q ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445 (903)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (903)
-.+....++.-.+..++.|+.....+...++-+.|+......+...|. ....++.++....+-++...+|+++++.-
T Consensus 287 i~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 287 IHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 345667777788888999999999999999999999888888766665 66778888888888888888888776421
Q ss_pred CCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002594 446 PSAGEAWKRRGQARAA---LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (903)
Q Consensus 446 p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 522 (903)
. --+..+..-.. .|+++...+++-+-.. ...-++..+-....+..-.+.|...|-++-+..-...+++..
T Consensus 364 ~----r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~ 436 (660)
T COG5107 364 K----RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIY 436 (660)
T ss_pred H----HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeee
Confidence 0 00111111111 2233222222222211 223344444444455556777788887776655344455554
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCC
Q 002594 523 LGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLG 599 (903)
Q Consensus 523 la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g 599 (903)
-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-+.|..+|++++..-... ...|-.+-..-..-|
T Consensus 437 ~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 437 CAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 4444 4567899999999999999999988777777778888999999999999887653332 345555555556677
Q ss_pred CHHHHHHHHHHhHccCCCC
Q 002594 600 QHKKAIKDLSSGLGIDPSN 618 (903)
Q Consensus 600 ~~~eA~~~~~~al~~~p~~ 618 (903)
+...+...=++..+..|..
T Consensus 517 ~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 517 SLNNVYSLEERFRELVPQE 535 (660)
T ss_pred chHHHHhHHHHHHHHcCcH
Confidence 7777777777777777753
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.75 E-value=0.018 Score=38.16 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777888888887777777763
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.68 E-value=0.015 Score=39.62 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002594 621 CLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p 650 (903)
++.++|.+|..+|++++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 466778888888888888888888665543
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.51 E-value=0.059 Score=40.19 Aligned_cols=38 Identities=34% Similarity=0.507 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHH
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
++++.+|..+.++|+|++|..+.+.+++++|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 46788888888888888888888888888888877543
No 296
>PRK10941 hypothetical protein; Provisional
Probab=95.48 E-value=0.12 Score=53.60 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=64.2
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHH
Q 002594 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (903)
Q Consensus 72 ~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~ 141 (903)
..|+=.+|.+.++++.|+..++..+.++|+.+.-+--+|.+|.++|.+..|+.+++.-+++.|+.+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 5577779999999999999999999999999988888999999999999999999999999998886543
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.34 E-value=0.032 Score=36.91 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM 413 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 413 (903)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555565555555555554
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.31 E-value=1.8 Score=43.44 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 393 NEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQ 443 (903)
Q Consensus 393 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (903)
...+.++|+.-|++++++.+... .++-.+..+.+.++++++-+..|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34589999999999999998754 5777888999999999999999998874
No 299
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.25 E-value=0.07 Score=61.46 Aligned_cols=120 Identities=21% Similarity=0.244 Sum_probs=100.2
Q ss_pred cchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCh-----hHHhhHHHHHHHh--hcHHHHHHHHHHHHHhC
Q 002594 27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-----QDICNRAFCYSQL--ELHKHVIRDCDKALQLD 99 (903)
Q Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-----~~~~~ra~~~~~l--g~~~~Ai~~~~~Al~l~ 99 (903)
..++..+.++-.+..+++..|++++|..|..-|..++.+-|.. ..+++.+.||.++ |+|.+++.+|+-|+...
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 4567778888888899999999999999999999988877421 2277888888875 69999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHH
Q 002594 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (903)
Q Consensus 100 P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l 146 (903)
|...++++.++.+|..+++++-|++...-...+.|..........++
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 99999999999999999999999999777777777775544433333
No 300
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=6.4 Score=51.64 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
...+.|...|++....|+++.|..++-.|.+.. -++++...|..+...|+-..|+..+++.++++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999998877 46899999999999999999999999999664
No 301
>PRK10941 hypothetical protein; Provisional
Probab=95.13 E-value=0.17 Score=52.53 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHH
Q 002594 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 587 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34566677788888888888888888888888888888888888888888888888888888888877543
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.13 E-value=0.35 Score=45.26 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
+..++.....-...++.+++..++..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45566666677777788888888887777888888888888888888888888888888877777777777777777777
Q ss_pred HcCCH
Q 002594 461 ALGES 465 (903)
Q Consensus 461 ~~g~~ 465 (903)
.+|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77764
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.03 E-value=0.074 Score=53.97 Aligned_cols=73 Identities=19% Similarity=0.115 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHH
Q 002594 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 628 (903)
+.|.-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444455677777777777777777777777777777777777777777777777777777777777766653
No 304
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.02 E-value=7.2 Score=43.15 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcc-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 002594 54 KAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYE 131 (903)
Q Consensus 54 ~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~-~~eA~~~~~~al~ 131 (903)
+-+..|.+|.... .++..+.+-..-.-+.+.+.+.-+.|.++|...|++++.++.-+.-.+..+. .+.|...|.++|-
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3366788888887 5778877665555566669999999999999999999999999988888777 9999999999999
Q ss_pred hccCChHhHHHHHHHHHH
Q 002594 132 HALHQSADLKQFLELEEL 149 (903)
Q Consensus 132 ~~~~~~~~~~~ll~l~~~ 149 (903)
.+|+.|.-++....++-.
T Consensus 169 ~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELM 186 (568)
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 999999877766555443
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.00 E-value=0.68 Score=40.41 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=60.3
Q ss_pred HHCCCHHHHHHHHHHhHccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hhccCcHHHH
Q 002594 596 HGLGQHKKAIKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAAL-------DLELDSMEKF 656 (903)
Q Consensus 596 ~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~l~p~~~~~~ 656 (903)
..-|-|++|...++++++.... +.-++-.|+.++..+|+|++++..-++++ +++.+....|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3456677777777777665221 13456667777778888777666555554 5566666555
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhc
Q 002594 657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (903)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~ 688 (903)
+ .+-+.++.++..+|+.++|+..|.++++
T Consensus 100 I---aaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 I---AAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H---HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4 4678899999999999999999998875
No 306
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.99 E-value=0.079 Score=53.78 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (903)
-+..|.-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34555666777888888888888888888888888888888877778888888888888888888777766554
No 307
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.96 E-value=0.18 Score=53.53 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCC-----------hhH------H--hhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh
Q 002594 44 AKLCSLRNWSKAIRILDSLLAQSYE-----------IQD------I--CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (903)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~~-----------~~~------~--~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~ 104 (903)
...|++|+|..|+.-|..++++... ... + -.+..||+++++.+-|+....+.|-++|.++.
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 4579999999999999999877511 111 1 25788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 105 AYILKGCAFSALGRKEEALSVWEKGY 130 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~~~~~~al 130 (903)
-|.+.+.++..+.+|.+|.+.+--+.
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877764
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.82 E-value=0.48 Score=44.38 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHH
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 630 (903)
...+..+..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+.+..|..+.+.-.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34555566666677788888888888777888888888888888888888888888888888878888888888888888
Q ss_pred HcCCH
Q 002594 631 AIGEY 635 (903)
Q Consensus 631 ~~g~~ 635 (903)
.+|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 88774
No 309
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.82 E-value=0.051 Score=35.15 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 002594 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (903)
Q Consensus 71 ~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~ 101 (903)
.+.++|.++..+|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777777665
No 310
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=5.4 Score=40.67 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=156.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhC--CCcHHH
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDP--------MYPEALIGRGTARAFQRELEAAISDFTEA---IQSN--PSAGEA 451 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~--p~~~~~ 451 (903)
+.+|.-....+++++|+..|.+++.... ....+...++.+|...|++..--+..... .... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5678888899999999999999986521 23456788999999999876544433322 2211 222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 002594 452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKS 518 (903)
Q Consensus 452 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 518 (903)
...+..-+ .....++.-+..++..++...... ..-..+..++++.|+|.+|+......+.- .++-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22222211 112345666666666665543221 23345678889999999999887766542 244456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH-
Q 002594 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA- 587 (903)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~- 587 (903)
++..-..+|....+..++...+..|-... |....+. ..-|.......+|.-|-.+|-++++-.. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 77777888888888888777766654432 2222222 2335566677889999999998887543 23333
Q ss_pred ----HHHHHHHHHHCCCHHHHHHHHH--HhHc-cCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhcc
Q 002594 588 ----YHLRGLLLHGLGQHKKAIKDLS--SGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 588 ----~~~la~~~~~~g~~~eA~~~~~--~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~l~p 650 (903)
|..+..+.. +..++-...++ ..++ .+....++....+.++. .+.+|..|+..|..-+.-+|
T Consensus 247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 233333333 33344333332 2233 23334566666666664 34578888888877665544
No 311
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.75 E-value=0.3 Score=41.36 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 002594 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGE 464 (903)
Q Consensus 401 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 464 (903)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455666677777777777777777777777777777777777666554 3444444444444444
No 312
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.75 E-value=0.32 Score=42.20 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (903)
+|..++..|++-+|+++.+..+..++++.. .+...|.++..+ +...+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence 466788888999999998888888777653 334444444332 22222222222222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 512 (903)
-.+++.|.++..+.|..+..++.+|.-+-....|+++....++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23567777777777877777777777777777777787777777765
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.69 E-value=0.33 Score=42.18 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEA---WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (903)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 497 (903)
+|..++..|++-+|++..+..+...+++... +...|.++. +.+......+....+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH--------
Confidence 3556677788888888888888777666533 333333332 22333332233333333
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (903)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (903)
.+++++.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3788999999999999999999999888888899999999998875
No 314
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=7.1 Score=40.95 Aligned_cols=267 Identities=13% Similarity=0.050 Sum_probs=169.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc--H
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--G 449 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~ 449 (903)
+..+......+++++++..|..++.. .|.+ ..+...+|..+...|+.++-.......-. .-+.- .
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 56677777888889999999999874 2221 24678899999999998876655554322 22221 1
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCC
Q 002594 450 EAWKRRGQARA-ALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----D--KEN 516 (903)
Q Consensus 450 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~ 516 (903)
.....+..... .-+....-+..+..+++.....- ..-..+..+|...++|.+|+......+.- + +.-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 12222222222 22344556666666666543221 23345788999999999999887766543 2 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 002594 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK 586 (903)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 586 (903)
.+++..-..+|+...+..+|...+..|-... |.. ...-..-|.++....+|.-|..+|=++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 4566677888888899999888887765432 211 12222335666677899999999999987543 2233
Q ss_pred H---HHHHHHHHHHCCCHHH--HHHHHHHhHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhccC
Q 002594 587 A---YHLRGLLLHGLGQHKK--AIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 587 ~---~~~la~~~~~~g~~~e--A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~l~p~ 651 (903)
+ +-.+-.+-...+..++ ++-.-..+++....+.++....+.++.. +.+|+.|+..|..-+..+|=
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 3 2233333344555555 4444455667677778888888888864 56799999999988877663
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=1.4 Score=49.48 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 499 FNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (903)
..-++..+...+.+++.++..+.. +...+...+....+......++..+|++..+..+++.+....|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555666666667777665433 355566667777777777777777777777777777776666665555544444
Q ss_pred -HHhhCCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHH
Q 002594 577 -VLYIDKRFSKAYHLR------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (903)
Q Consensus 577 -al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 628 (903)
+....|.+......+ +..+..+|+..++.....++..+.|.++.+...+...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 666667666554444 6666777777777777777777777776555554444
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.9 Score=48.46 Aligned_cols=134 Identities=21% Similarity=0.114 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H
Q 002594 433 AAISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C 509 (903)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 509 (903)
.++..+...+.++|.++..+.. +...+...++...+.-.+..++..+|++..++.+++......|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555555556667776665333 366666677777777778888888888888888887777776665555554444 6
Q ss_pred HHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Q 002594 510 VKLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (903)
Q Consensus 510 l~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 566 (903)
....|.+......+ +.....+|+..++.....++....|.++.+...+.....+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 77777776655444 6677777777777778888888777776666555555433333
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.05 E-value=0.52 Score=50.96 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002594 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (903)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 470 (903)
....|+.-.|-.-+..++...|..|......+.+...+|+|+.|...+..+-..-..-..+...+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34567777777777788888888888777888888888888888777766554444444455555566677788888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002594 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (903)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 517 (903)
...-.+.-.-+++++...-+.....+|-+++|..++++.+.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77777766666777666666666677778888888888888776543
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.01 E-value=0.59 Score=39.55 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=32.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC--HHHHHHHHHHHHHcCC
Q 002594 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE 634 (903)
Q Consensus 571 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 634 (903)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555556666666666666666666666666666666666655543 2333333334433333
No 319
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.96 E-value=17 Score=43.13 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=62.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002594 524 GLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (903)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 599 (903)
+..-....+.+.|...+.+......-. ..++..+|.-....+..++|...+..+..... +.........+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333334555666666666543332211 22233334333333224556666655443222 2222333333444666
Q ss_pred CHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 600 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (903)
+++.+...+...-..........|.+|.++..+|+.++|...|+++.
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77666666665433333445667777777777777777777777763
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.96 E-value=0.075 Score=51.86 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002594 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (903)
Q Consensus 77 ~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~ 136 (903)
....+.++.+.|...+.+|+++-|.+...++++|....+.|+++.|.+.|++.|++.|..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456678899999999999999999999999999999999999999999999997776653
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.86 E-value=0.087 Score=33.96 Aligned_cols=31 Identities=35% Similarity=0.722 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 621 CLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
+++.+|.++..+|++++|...|++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666554
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=6.3 Score=37.22 Aligned_cols=118 Identities=13% Similarity=-0.071 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHH
Q 002594 496 FKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK 569 (903)
Q Consensus 496 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 569 (903)
.+..++|+..|..+-+..-.. .-+....+.+....|+...|+..|..+-.-.|-- --+...-+.++...|-|+.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 344455555554444333222 1233444555555555555555555543322210 1122233344445555554
Q ss_pred HHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 570 ALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 570 A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
.....+..- ..+|-...+.-.||..-++.|++..|...|.....
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 444333321 11222233444555555555555555555555444
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.65 E-value=0.38 Score=51.97 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002594 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (903)
Q Consensus 530 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 609 (903)
.|+...|-.-+..++...|..+......+.+...+|+|+.|...+..+-..-.....+...+-.....+|++++|.....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 34555555555555555555555555555555555555555554444333322222333333344445555555555555
Q ss_pred HhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002594 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (903)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p 650 (903)
-.+...-+++++..--+..-..+|-+++|..++++.+.++|
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 55544444444444444444445555555555555555544
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.58 E-value=3.9 Score=46.25 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHH
Q 002594 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (903)
Q Consensus 548 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 627 (903)
....+.+..++..+.....+.-|.++|.+.-. ...+..++...+++.+|....++.-+.-| ++++..|.
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaq 812 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQ 812 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc---cccchHHH
Confidence 33344444445555555555555555544311 11233344455666666555544333322 34444555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 002594 628 CYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 628 ~~~~~g~~~~A~~~~~~a 645 (903)
.+....++++|.+.|.+|
T Consensus 813 wLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhhhhhHHHHHHHHHHh
Confidence 555555555555544443
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.53 E-value=6.5 Score=37.14 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHH
Q 002594 428 QRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD-----ILHERGIVNFKFKDFN 500 (903)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~ 500 (903)
.+..++|+..|..+-+..-.. .-+.+..+.+....|+...|+..|..+-.-.| .|. +...-+.++...|-|+
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHH
Confidence 355566666665554433322 23445556666666666666666666554333 111 2333444555566666
Q ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 501 AAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 501 ~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (903)
+-....+..- ..+|-...+.-.||...++.|++..|...|.....
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5544443321 12333344555566666666666666666665544
No 326
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.45 E-value=0.25 Score=54.08 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (903)
++.....|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....++.++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 444445555555566677788888888888887777777777777654 45666777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 458 ARAALGESVEAIQDLSKALEFEPNS 482 (903)
Q Consensus 458 ~~~~~g~~~~A~~~~~~al~~~p~~ 482 (903)
++..++++.+|+++...+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 7777777777777776666666643
No 327
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.05 E-value=0.84 Score=55.96 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=87.2
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAIS------IFDQI-LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS------- 444 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 444 (903)
.........|......|.+.+|.+ ++... -.+.|.....+..++.++...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345566777888888888887777 44422 2346777788888888888888888888877766532
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 445 -NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (903)
Q Consensus 445 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 511 (903)
.|+....+.+++......++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2334556666776666666666777766666554 233344455566666666666666666666655
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=1.1 Score=50.53 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCChhH-------HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQD-------ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-------~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~ 114 (903)
...+.|+..+|..|++.|...+.--++... ..+++.||+.+.+.+.|+..+.+|=+.||.++---...-++..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 446789999999999999988765422211 4577889999999999999999999999999888888889999
Q ss_pred HcCCHHHHHHHHHHHHhhc
Q 002594 115 ALGRKEEALSVWEKGYEHA 133 (903)
Q Consensus 115 ~lg~~~eA~~~~~~al~~~ 133 (903)
.-|+-++|+.+..+....-
T Consensus 440 ~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HhcchHHHHHHHHHHHhhh
Confidence 9999999999988885443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.92 E-value=1.1 Score=41.17 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHc
Q 002594 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (903)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (903)
.+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555788888888888877788888888888888888888888888888888887777777788888888888
Q ss_pred CCH
Q 002594 633 GEY 635 (903)
Q Consensus 633 g~~ 635 (903)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 874
No 330
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.91 E-value=0.15 Score=49.78 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC
Q 002594 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (903)
Q Consensus 562 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 618 (903)
.+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555543
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.81 E-value=1 Score=45.23 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCHH-------HHHHHHHHhHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 586 KAYHLRGLLLHGLGQHK-------KAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 586 ~~~~~la~~~~~~g~~~-------eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
..+..+|++|...|+.+ .|+..|.++++... +...+.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 44556666666666643 34555555554322 124678889999999999999999999988765443
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.73 E-value=1.5 Score=40.39 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (903)
.+..........++.+++..++..+--+.|+.++.-..-|.++...|++.+|+..++.+.+..+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444455555778888888887777778888887778888888888888888888887777777676666777777776
Q ss_pred CCH
Q 002594 463 GES 465 (903)
Q Consensus 463 g~~ 465 (903)
||.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 653
No 333
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.70 E-value=32 Score=42.47 Aligned_cols=191 Identities=20% Similarity=0.121 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWK 453 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~ 453 (903)
.+....+++..+.|+.|+..|+++-...|... ++.+..|.....+ | .+++|+..|++.- -.|.-+--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence 34555677888999999999999999998754 5677778776654 2 4677777777643 3566677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHH---HHH
Q 002594 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-----KDFNAAVEDLSACVKLDKENKSAYTY---LGL 525 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~---la~ 525 (903)
..|.+|..+|++++-+++|.-|++..|+++.+-...-.+.+++ .+-..|....--++...|.....-.. +-.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEI 636 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 9999999999999999999999999998876433332222221 12233444444455555543211100 000
Q ss_pred ----------------------------HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 526 ----------------------------ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (903)
Q Consensus 526 ----------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (903)
+.+-.|..---...++++....+- .+..+.-.+...+|+++-+.+.....
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 637 LYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred HHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 011122222333445555544433 56666666777888887766655543
No 334
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.53 E-value=0.99 Score=55.37 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC-------
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------- 616 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------- 616 (903)
..+.+++......++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+....
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 33444444444444444444444444322 333344445555555666666666666666655321
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 617 -SNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 617 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
.....+..++..+..++++..|....+....+.
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence 124456666777777777777766666655543
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.51 E-value=1.9 Score=41.85 Aligned_cols=98 Identities=13% Similarity=-0.007 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 002594 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (903)
Q Consensus 586 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 662 (903)
.++..+|..|.+.|++++|++.|.++....... .+.++.+..+....+++.....+..++-.+-.. ...|......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 467777888888888888888888876654322 456777777777888888888887777665433 1213333334
Q ss_pred HHHHHHHHHHhhcHHHHHHHHh
Q 002594 663 FYQKEIALYTASKINSEFCWFD 684 (903)
Q Consensus 663 ~~~~~~~~~~~~~~~~A~~~l~ 684 (903)
....|+.....++|..|...|-
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHH
Confidence 4445666667788888888773
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.43 E-value=2.1 Score=38.49 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHhHc-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHH
Q 002594 585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 585 ~~~~~~la~~~~~~g---~~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
....+++++++.... +..+.+.+++..++ ..|. .-++.+.++..+.++++|+.++.+.+..++.+|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456777888887654 44667888888886 4443 3578888899999999999999999999999998877543
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.33 E-value=16 Score=38.06 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 482 SADILHERGIVNFKFKDFNAAVEDLS 507 (903)
Q Consensus 482 ~~~~~~~la~~~~~~g~~~~A~~~~~ 507 (903)
+++.+..+|..+.+.|++.+|..+|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56777888888888887777776663
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.08 E-value=2.1 Score=42.95 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCC
Q 002594 551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 616 (903)
+..+..+|.+|...|+.+ .|+..|.++++... +...+.+.+|.+..+.|++++|+.+|.+++....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344555666666666643 34444444443321 2245778889999999999999999999887643
No 339
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=18 Score=38.01 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=167.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC--CH
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQS--NPSA--------GEAWKRRGQARAALGESVEAIQDLSKALEF---EPN--SA 483 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~--~~ 483 (903)
...+.......++++++..+..++.. .|.+ ......++..+...|+.++-.......-.. -+. ..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 45556666677789999999988874 1221 245778999999999987766655543322 111 12
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cc--cc
Q 002594 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL----DR--NF 550 (903)
Q Consensus 484 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p--~~ 550 (903)
.+...+..... .-+..+.-+..+..+++-..... ..-..+..+|...++|.+|+......+.. +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 22222222222 23445566666666665533322 22345788899999999999887766543 21 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHhHccCC---CCHH
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFSKA--YHLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIE 620 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~ 620 (903)
.+++..-..+|....+..+|...+..|-.. .|....+ -..-|.++....+|..|..+|-+|++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 456666677888888999998888877543 2221222 22336666677899999999999987532 1233
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHH--HHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHH
Q 002594 621 ---CLYLRASCYHAIGEYREAIKDY--DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (903)
Q Consensus 621 ---~~~~la~~~~~~g~~~~A~~~~--~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~ 695 (903)
.+-.+-.|-..++..++-...+ +.+++....+.++....+.++-++. +..|+.|+..|..-+.-||--..
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS-----LkdF~~AL~~yk~eL~~D~ivr~ 322 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS-----LKDFEKALADYKKELAEDPIVRS 322 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc-----HHHHHHHHHHhHHHHhcChHHHH
Confidence 3333444445566666654444 4455555555555544444444443 46899999999888888877655
Q ss_pred H
Q 002594 696 Y 696 (903)
Q Consensus 696 ~ 696 (903)
+
T Consensus 323 H 323 (411)
T KOG1463|consen 323 H 323 (411)
T ss_pred H
Confidence 5
No 340
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=11 Score=42.46 Aligned_cols=153 Identities=16% Similarity=0.041 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Q 002594 463 GESVEAIQDLSKALEF------------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------------------ 512 (903)
Q Consensus 463 g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------ 512 (903)
..|++|...|.-+... .|.+.+.+..++.+...+|+.+-|.....+++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4466777777666554 2344566677777777777777777776665421
Q ss_pred ---CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHH-----h
Q 002594 513 ---DKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFY-QDLANSEKALECLQQVL-----Y 579 (903)
Q Consensus 513 ---~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~g~~~~A~~~~~~al-----~ 579 (903)
.|.|-.. ++..-..+.+.|-+..|.++.+-.+.++|. ++-+...+..+| .+..+|.=-+..++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1111111 112223344456666666666666666665 554444444433 23444444444444431 1
Q ss_pred hCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHhHccCC
Q 002594 580 IDKRFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDP 616 (903)
Q Consensus 580 ~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p 616 (903)
.-|+. ..-..+|..|..... -+.|...+.+|+...|
T Consensus 412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 22221 112233344433333 3445555555555554
No 341
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=15 Score=41.35 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 394 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
...|++|...|.-+... .|.+.+.++.++.+...+|+.+.|....++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34566777777666543 35667778888888888888877777777665
No 342
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.77 E-value=5.7 Score=44.99 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------H
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTEA------I 442 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l 442 (903)
-|-.+|...+..=+++-|.+.|.++-.. ....|. -..+|..+...|.+.+|.+.|.+. +
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHH
Confidence 3556666666667777777777655311 111122 245677778888898888888753 2
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH----------HHH
Q 002594 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLS----------ACV 510 (903)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~al 510 (903)
++..+ .-.+.+++-++..|..++-..+.++-.+. +-+.+ ...|.++...|+.++|+...- -+-
T Consensus 666 EmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 666 EMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred HHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 22211 11234455555566655555555443222 11122 223667777888888776532 222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002594 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (903)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 590 (903)
+++..+.+.+...+..+.....+.-|.+.|.+.-. ...+..++...+++++|..+.++.-+.- +.+|+-
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~p 809 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMP 809 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccch
Confidence 33444445555666666666666666666665421 2334566777889999887766543333 346777
Q ss_pred HHHHHHHCCCHHHHHHHHHHh
Q 002594 591 RGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 591 la~~~~~~g~~~eA~~~~~~a 611 (903)
.|.-+....+++||.+.|.+|
T Consensus 810 yaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHh
Confidence 788888888888887776654
No 343
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.69 E-value=3.8 Score=36.95 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002594 449 GEAWKRRGQARAALG---ESVEAIQDLSKALE-FEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (903)
Q Consensus 449 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 521 (903)
....++++.++.... +..+.+.+++..++ ..|. .-+..+.++.-+++.++|+.++.+.+.+++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345556666665443 34556666666665 3332 2456666777777777777777777777777777665543
No 344
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.65 E-value=2.2 Score=41.48 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHH
Q 002594 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SAD----ILH 487 (903)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~ 487 (903)
++..+|..|...|+++.|++.|.++....... .+.+..+..+....+++.....++.++-..-.. +.+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44445555555555555555555544432221 234444444555555555555555544433211 111 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 002594 488 ERGIVNFKFKDFNAAVEDLSACV 510 (903)
Q Consensus 488 ~la~~~~~~g~~~~A~~~~~~al 510 (903)
.-|..++..++|..|...|-.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 23444444555555555554443
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=6.4 Score=42.55 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=117.3
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002594 389 IAQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAF------------QRELEAAISDFTEAIQSNPSAGEAWKRR 455 (903)
Q Consensus 389 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (903)
....+.|.| .+++..=.+.+..+|+...+|...-.++.. ..-+++-+.+...+++.+|+...+|+.+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 334445555 467777788888888877766554333322 2245666778888889999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 456 GQARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (903)
Q Consensus 456 a~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 529 (903)
..++...+. +..-+.+.+++++.+|.+..+|...-.+..... ...+-+++..+++..++.|..+|.+...++..
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 988887653 678888999999999988777665544443322 35667788888888888888888887777652
Q ss_pred ------cCC------HHHHHHHHHHHHHhCcccHHHHHH
Q 002594 530 ------IGE------YKKAEEAHLKAIQLDRNFLEAWGH 556 (903)
Q Consensus 530 ------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 556 (903)
.|. ...-+.....|+-.+|++..+|+.
T Consensus 196 l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 196 LHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred hccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 231 223345556667778888777765
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.88 E-value=0.58 Score=47.90 Aligned_cols=83 Identities=11% Similarity=-0.028 Sum_probs=58.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhccCc
Q 002594 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL-RASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 574 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
|.++....++++..|...+....+.|.+.+--..|.+++...|.+++.|.. -+.-+...++++.+...|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444566677777777766667777777777777777777777777765 4445566777777777777777777777
Q ss_pred HHHH
Q 002594 653 MEKF 656 (903)
Q Consensus 653 ~~~~ 656 (903)
+..|
T Consensus 176 p~iw 179 (435)
T COG5191 176 PRIW 179 (435)
T ss_pred chHH
Confidence 7765
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.66 E-value=15 Score=41.40 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=62.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002594 424 ARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (903)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 502 (903)
.....++++++....... ++-|.- ..-....+..+...|..+.|+... .+++..+.|+ .+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 334467777766665411 112221 233445555666666666665542 2444444333 466777766
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (903)
Q Consensus 503 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (903)
.+..++ .+++..|..+|.....+|+++-|..+|.++- -+..|..+|.-.|+.+.-.++.+.+
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 665432 2355667777777777777777777666642 1334445555566655444444443
No 348
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.54 E-value=24 Score=36.81 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (903)
Q Consensus 391 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (903)
..+..+..+-++.-..+++++|..+.+|..+|.-- ..-..+|...+.++++
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALK 244 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence 34445555555555666666666666655554322 1234455555555554
No 349
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.48 E-value=33 Score=38.23 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=69.4
Q ss_pred HHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc
Q 002594 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 448 (903)
+.......+.++..|+.........+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|++
T Consensus 94 yr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 94 YRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 4555666777888888888888888889999999999999999999999888887777665 888999999999999988
Q ss_pred HHHHH
Q 002594 449 GEAWK 453 (903)
Q Consensus 449 ~~~~~ 453 (903)
+..|.
T Consensus 174 p~Lw~ 178 (568)
T KOG2396|consen 174 PKLWK 178 (568)
T ss_pred hHHHH
Confidence 76653
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.24 E-value=2.6 Score=47.59 Aligned_cols=96 Identities=10% Similarity=-0.073 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (903)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 490 (903)
.+.+-|.-+++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.+++++|-+.+|.++-......
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34556667777788888888888887766544 445677788888888888888888888888888877777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 002594 491 IVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 491 ~~~~~~g~~~~A~~~~~~al~~ 512 (903)
.+....+.-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7777788888888877766544
No 351
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=8.9 Score=41.50 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 511 (903)
+++++.-.+.+..+|+...+|...-.++...-... +..|.. ...-.++-+.+...+++
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~~e------------k~~~ld~eL~~~~~~L~ 103 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEPLE------------KQALLDEELKYVESALK 103 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCHHH------------HHHhhHHHHHHHHHHHH
Confidence 45677777777888887766654433332211100 111100 00123334444444445
Q ss_pred hCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCH
Q 002594 512 LDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYIDKRFS 585 (903)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~ 585 (903)
.+|+...+|+....++.+.+. +..-+...+++++.+|.+..+|...=.+.... ....+=+++..+++..++.+.
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence 555555555555444444332 23444445555555554444443322222111 113334444555555555555
Q ss_pred HHHHHHHHHHHH------CC------CHHHHHHHHHHhHccCCCCHHHHHH
Q 002594 586 KAYHLRGLLLHG------LG------QHKKAIKDLSSGLGIDPSNIECLYL 624 (903)
Q Consensus 586 ~~~~~la~~~~~------~g------~~~eA~~~~~~al~~~p~~~~~~~~ 624 (903)
.+|+....++.. .| -...-++.-..|+-.+|++..+|+.
T Consensus 184 saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 184 SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 555544444431 22 1233445555666667777776666
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.80 E-value=0.73 Score=32.11 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
..++.++|.+|...|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3567888888988999999998888888764
No 353
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.75 E-value=0.64 Score=31.92 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 104 QAYILKGCAFSALGRKEEALSVWEKGYE 131 (903)
Q Consensus 104 ~a~~~lG~~~~~lg~~~eA~~~~~~al~ 131 (903)
+.|.++|.+-+..++|++|+..|+++|+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999999999954
No 354
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.58 E-value=0.64 Score=47.64 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=42.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 002594 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (903)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 556 (903)
..|+++..|...+....+.+.|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|+++..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344555555555555555555555555555555555555555544 3333445555555555555555555555555443
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=28 Score=35.74 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=152.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhC--CCCHHH
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAWKRRGQARAALGESVEAIQDLSK---ALEFE--PNSADI 485 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~--p~~~~~ 485 (903)
..+|.-....+++++|+..|.+.+.... +...+...++.+|...|++..-.+.... +.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4567777788999999999999986521 1235678899999999987654433332 22211 112222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHH
Q 002594 486 LHERGIVN-FKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLE 552 (903)
Q Consensus 486 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 552 (903)
...+..-+ .....++.-+..+..+++...... ..-..+..++++.|+|.+|+......+.. .+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 22221111 123455566666666555432221 22345677889999999999887766543 233456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH--HHHHHHHHHCCCHHHHHHHHHHhHccCC---CCHHHH
Q 002594 553 AWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFSKAY--HLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIECL 622 (903)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~ 622 (903)
++..-..+|....+..++...+..|-.. .|....+- ..-|.......+|..|-.+|-++++-.. .+..+.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6777778888888888887777766433 23222222 2235566677899999999999887532 233333
Q ss_pred HHHHHHH---HHcCCHHHHHHHHH--HHHh-hccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCcHHH
Q 002594 623 YLRASCY---HAIGEYREAIKDYD--AALD-LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (903)
Q Consensus 623 ~~la~~~---~~~g~~~~A~~~~~--~al~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~~~~ 696 (903)
..+-..+ ..++..++-...++ .+++ .+....++....+.++-++ .+..|+.|+..|...+.-+|-...+
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NR-----sL~df~~aL~qY~~el~~D~~iRsH 321 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNR-----SLKDFSDALAQYSDELHQDSFIRSH 321 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCC-----cHhhHHHHHHHhhHHhccCHHHHHH
Confidence 2222111 22333333333222 2222 1112222222222222222 2467888888888777767665544
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.32 E-value=41 Score=37.57 Aligned_cols=201 Identities=11% Similarity=-0.044 Sum_probs=119.4
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (903)
.|.+-..+..+-..+-.+....-...++.+.+... .+..+++.++.+|... ..+.-...+++..+.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34444444555555555555566667777777655 4467888888888887 556777888888888888887777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPN---SA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSA-YTYLGLALS 528 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~ 528 (903)
..|.. ++...+..+|.+++...-. ++ ++|..+-. +--.+.+.-+....+.-..... ...+ +...-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 87776 7888888888888764221 11 12222211 1122333333333332222211 1122 222224455
Q ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCC
Q 002594 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------------------LANSEKALECLQQVLYIDK 582 (903)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p 582 (903)
...++++|++.+...++.+..+..+..++...+.. -.++-+++.-|++.+..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 56778888888888888877776665555544443 3456667777776665443
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.23 E-value=0.81 Score=31.89 Aligned_cols=30 Identities=37% Similarity=0.347 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 103 LQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (903)
Q Consensus 103 ~~a~~~lG~~~~~lg~~~eA~~~~~~al~~ 132 (903)
+.++..+|.+|..+|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788899999999999999999998543
No 358
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.92 E-value=2.6 Score=36.06 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~~~~~~al~~~ 133 (903)
+.+.+|.++...|++++|+..+++++.++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554444
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.81 E-value=2.2 Score=36.53 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-----CC-----hhHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q 002594 43 LAKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQL 98 (903)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~-----~~-----~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l 98 (903)
....++.|||..|++.+.+..... +. .....++|.++...|++++|+..+++||.+
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445778999999988777765443 22 123668999999999999999999999974
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.78 E-value=25 Score=39.75 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=81.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 002594 457 QARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (903)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 535 (903)
......++++++....... ++-|.- ......++..+.+.|-++.|+...+ ++...+. +..+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFE---LALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHH---HHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhH---HHHhcCCHHH
Confidence 3445567777776666421 112221 3345566666777777777666542 3333333 3346677777
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccC
Q 002594 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (903)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 615 (903)
|.+..++ .+++..|..||......|+++-|..+|+++- -+..+..+|.-.|+.+.-.+..+.+....
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7654432 2356677777777777777777777777642 23445566667777655555544444332
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 616 PSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
. +...-.++..+|+.++.++.+.++
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 112223445567777766665543
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.61 E-value=0.81 Score=28.37 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 104 QAYILKGCAFSALGRKEEALSVWE 127 (903)
Q Consensus 104 ~a~~~lG~~~~~lg~~~eA~~~~~ 127 (903)
.+++.+|.++..+|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467778888888888888887665
No 362
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=47 Score=36.00 Aligned_cols=133 Identities=13% Similarity=-0.007 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-c
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKED-PM--------YPEALIGRGTARAFQRELEAAISDFTEAIQSN-----PS-A 448 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~ 448 (903)
++.....++.+.++.+|..+-+..+... -. .+..|+.+..++...|+...-...+...+... .. .
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~q 208 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQ 208 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhH
Confidence 3444445566688888888877765421 11 23556777777777777666555555544321 11 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEF--EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (903)
+.....+-..|...+.|+.|-....+..-- .. ..+..++.+|.+..-+++|..|.+++..|+...|.+
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 233444556666677777777766655311 11 124456677777777888888888888888887764
No 363
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=49 Score=35.91 Aligned_cols=126 Identities=17% Similarity=0.033 Sum_probs=80.6
Q ss_pred HHHcCCHHHHHHHHHHHHHh----CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHH
Q 002594 425 RAFQRELEAAISDFTEAIQS----NPS-----AGEAWKRRGQARAALGESVEAIQDLSKALEFE-----PN-SADILHER 489 (903)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l 489 (903)
+....++.+|.+.-+..+.. +.. .+..|+.+..+|...|+...-...+...+... .. .+.....+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34457888888777665532 111 14467777778888888666555555444331 11 13345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 002594 490 GIVNFKFKDFNAAVEDLSACVKL--DKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (903)
Q Consensus 490 a~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 550 (903)
-..|...+.|+.|.....++.-- ..+ ....++++|.+..-+++|..|.+++-.|+...|.+
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 67777788888887777665421 111 23456778888888888888888888888888864
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.93 E-value=3.6 Score=33.34 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhH----HhhHHHHHHHhhcHHHHHHHHHHHH
Q 002594 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKAL 96 (903)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~ra~~~~~lg~~~~Ai~~~~~Al 96 (903)
.++-++|.+.+.++|+..++++++..+++.. +.-+..+|...|+|.+++.....=+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888888888888888887744444 3345568888888888877665443
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.70 E-value=5.9 Score=48.63 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=92.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH----CC---CHHHHHHHHHHhHccCCCCHHHHHHHHH
Q 002594 558 TQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHG----LG---QHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (903)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~----~g---~~~eA~~~~~~al~~~p~~~~~~~~la~ 627 (903)
..++...+.|+.|+..|++.-...|.. .++.+..|..+.. .| .+++|+..|++.-. .|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 345666777888888888888777754 3556666666543 22 47778888876544 5666778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCC
Q 002594 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (903)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~ 692 (903)
+|.++|++++-+++|.-|++..|..+..-...-..-|++-.+.+...+.. +...-.++...|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 623 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREA--LVFMLLALWIAPE 623 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCcc
Confidence 99999999999999999999999999876666666666666666554433 3322234444444
No 366
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.02 E-value=50 Score=34.91 Aligned_cols=183 Identities=13% Similarity=0.020 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (903)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (903)
-++|+..-.-...+.|..++++-.++.+.+...+...=...--..+-+...+... ...+-++++...+.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l--------W~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL--------WDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh--------hhHHHHHHHHHHHHHHH
Confidence 4778887777788888888888777776654332211000000001111111122 22234567777777777
Q ss_pred HhCc-ccHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHcc--CC
Q 002594 545 QLDR-NFLEAWGHLTQFYQ-----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DP 616 (903)
Q Consensus 545 ~~~p-~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p 616 (903)
.... .-....-.++.++. ..-++..-..+|.-.....|+ +.+-.+.+.+..+..-...++...+..... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 6543 21122222222222 234666666777776666665 455566677776666677777777766554 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHH
Q 002594 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (903)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 656 (903)
.....+-..|..+.++|+.++|...|++++.+.++..+..
T Consensus 363 gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 363 GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 3345667789999999999999999999999998887643
No 367
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.69 E-value=8.2 Score=39.62 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHH
Q 002594 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (903)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 623 (903)
+=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3344555555555555555555555555555555555555555555555555555555555544433
No 368
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.59 E-value=3 Score=42.66 Aligned_cols=68 Identities=18% Similarity=0.095 Sum_probs=58.8
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhH
Q 002594 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (903)
Q Consensus 73 ~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~ 140 (903)
.+.=.++.+.++++.|.....+.+.++|+.+..+--+|.+|..+|.+.-|+.+++..+++.|..+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 35555888889999999999999999999998899999999999999999999999888888887653
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.17 E-value=7.8 Score=31.46 Aligned_cols=62 Identities=6% Similarity=0.044 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHH
Q 002594 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443 (903)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~ 443 (903)
.-.+..|.-++...+.++|+..++++++..++.+.-+.. +..+|...|+|.+++.+..+=+.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888887776654444 44566777888777776555443
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.53 E-value=4 Score=39.86 Aligned_cols=72 Identities=17% Similarity=0.053 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcc--CChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHcCCHHHHH
Q 002594 51 NWSKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPT----LLQAYILKGCAFSALGRKEEAL 123 (903)
Q Consensus 51 ~y~~Ai~~y~~ai~~~--~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~----~~~a~~~lG~~~~~lg~~~eA~ 123 (903)
.=+.|...|-++=... .++...+.+|-.|. ..+.++|+..+.++|++.+. +++.+..++.+|..+|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3355666655543333 55555555554444 56777777777777776533 3567777777777777777775
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.73 E-value=61 Score=34.01 Aligned_cols=147 Identities=13% Similarity=0.035 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002594 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (903)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (903)
.-+.+-....+..+..+-++....+++++|+.+.++..++.- ...-..+|...++++++... ..++........
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ 259 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh
Confidence 334444555566777778888888899999888888777653 22345677788888876532 222233333333
Q ss_pred CCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCCHHHHHH
Q 002594 497 KDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALE 572 (903)
Q Consensus 497 g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~ 572 (903)
|...+|.. +. ..+. .....++.|..++|+..+|++.++...+..|-. ..++-++...+.+..-|.+...
T Consensus 260 ~~~~da~~------rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 260 SPQHEAQL------RR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhhh------hc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222211 11 1222 233467888889999999999988887776632 3344556666665555554444
Q ss_pred HHHH
Q 002594 573 CLQQ 576 (903)
Q Consensus 573 ~~~~ 576 (903)
.+-+
T Consensus 333 vLak 336 (556)
T KOG3807|consen 333 VLAK 336 (556)
T ss_pred HHHh
Confidence 4433
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.59 E-value=13 Score=38.70 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=56.1
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (903)
Q Consensus 72 ~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al 130 (903)
+..++..+...|+++.++..+++-+.++|.+-.+|..+-.+|...|+...|+..|++.-
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999983
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.21 E-value=19 Score=39.83 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIG--RGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
.....+..+++.++|..|..+|+.+...-|.... .+.. .|..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999986344333 3333 455556788999999999988765
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.05 E-value=11 Score=36.91 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 002594 568 EKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI 639 (903)
Q Consensus 568 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 639 (903)
++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456655555432211 45666667776665 45677777777777776433 3677777777777777777764
No 375
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.90 E-value=1.1e+02 Score=36.45 Aligned_cols=263 Identities=8% Similarity=-0.045 Sum_probs=171.8
Q ss_pred HHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSN 445 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 445 (903)
.+.......+.+......+-.++...|++++-...-.++-+..|..+..|..-..-.. ..++-.++...|++++..
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d- 179 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD- 179 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-
Confidence 3444455566677778888888999999998888888888889998888866554433 336778888899998853
Q ss_pred CCcHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 446 PSAGEAWKRRGQARAA-------LGESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVK 511 (903)
Q Consensus 446 p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 511 (903)
-.....|...+..... .++++.-...|.+++..-.. ....+..+...|...-..++-+.++...+.
T Consensus 180 y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 180 YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 3445556665555543 35677778888888764321 234555566666666666777777777776
Q ss_pred hCCCCHHH----HHHHH--H-HHHHcCCHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 512 LDKENKSA----YTYLG--L-ALSSIGEYKKAEEAHLKA-------IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (903)
Q Consensus 512 ~~p~~~~~----~~~la--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (903)
.. -+..+ +.... . ......+++.|..-+.+. ++..|.....|..+.......|+.-.-...++++
T Consensus 260 ~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 260 QP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred cc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 65 32221 11111 1 122345566665554333 3334444566677777778889988888889999
Q ss_pred HhhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcC
Q 002594 578 LYIDKRFSKAYHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (903)
Q Consensus 578 l~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (903)
+...+.+...|...|..+ ..++-.+.+...+.+++...|-...+|-..-..+.+.+
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~r 395 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNR 395 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcC
Confidence 888888888888877655 34555667778888888887776555544333333333
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.81 E-value=69 Score=33.93 Aligned_cols=189 Identities=10% Similarity=-0.013 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 509 (903)
--++|+..-.-...+.|..++++-.++.+..+..+...=...--..+-+...+...| ..+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHH
Confidence 357899988888999999999988887776543321110000000011111222222 223346677777777
Q ss_pred HHhCC-CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Q 002594 510 VKLDK-ENKSAYTYLGLALSS-----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--D 581 (903)
Q Consensus 510 l~~~p-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 581 (903)
+.... .-....-.++-++.. .-++..-..+|.-.....|+ +.+-.|.+....+..-.+.++...+..... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 76643 222233333333332 33566666666666666654 455556666665555566667666665543 2
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHH
Q 002594 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (903)
Q Consensus 582 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 627 (903)
..+...+-..|.++.++|+.++|...|++++.+.++..+..+.+..
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 2334556678999999999999999999999998887766555443
No 377
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.76 E-value=2.2 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
+++..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888764
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.51 E-value=6.7 Score=40.77 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
++..++..+...|+++.++..+++.+..+|.+..+|..+-..|+..|+...|+..|+++-
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555443
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.50 E-value=4.3 Score=27.56 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhccC
Q 002594 620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD 651 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~--~~~al~l~p~ 651 (903)
+.++.+|..+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555443
No 380
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.32 E-value=7.3 Score=41.98 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002594 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (903)
Q Consensus 455 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 504 (903)
+..||..+++.+.|+....+.+-++|.....+...|.++..+.+|.+|..
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444443
No 381
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.16 E-value=5.6 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 002594 383 FRLSRGIAQVNEGKYASAISI 403 (903)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~ 403 (903)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 382
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.11 E-value=2 Score=26.58 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 002594 621 CLYLRASCYHAIGEYREAIKDY 642 (903)
Q Consensus 621 ~~~~la~~~~~~g~~~~A~~~~ 642 (903)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.77 E-value=1.1e+02 Score=34.36 Aligned_cols=98 Identities=12% Similarity=-0.073 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002594 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (903)
Q Consensus 412 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (903)
|-+...+..+-.++...-.+.-....+.+++... .+..+++.++.+|... ..+.-....++..+.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333444444444444444555556666666554 3455666777777766 4455666677777777666666666676
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 002594 492 VNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 492 ~~~~~g~~~~A~~~~~~al~~ 512 (903)
.|.. ++...+..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 6665 6677777777776644
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.79 E-value=5.5 Score=40.84 Aligned_cols=57 Identities=23% Similarity=0.196 Sum_probs=52.9
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 73 ~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~a 129 (903)
.-.+..|...|.+.+|++.|++++.++|-+-..+..+-..+..+|+--.|.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345668999999999999999999999999999999999999999999999999987
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.61 E-value=12 Score=40.33 Aligned_cols=85 Identities=14% Similarity=0.019 Sum_probs=65.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHHh----C---C-CChhHHHHHHHH
Q 002594 45 KLCSLRNWSKAIRILDSLLAQSYE----IQDICNRAFCYSQLELHKHVIRDCDKALQL----D---P-TLLQAYILKGCA 112 (903)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~----~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l----~---P-~~~~a~~~lG~~ 112 (903)
.|+..|+.+.|+++|.++-.-+.+ +..+.|.-.+-+-+|+|-+....-.+|.+- . + -.+++.+.-|.+
T Consensus 159 hy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa 238 (466)
T KOG0686|consen 159 HYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLA 238 (466)
T ss_pred HHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHH
Confidence 355699999999999995444422 223567777888899999999999988874 1 1 124588889999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 002594 113 FSALGRKEEALSVWEKG 129 (903)
Q Consensus 113 ~~~lg~~~eA~~~~~~a 129 (903)
.+.+++|..|.+.|-.+
T Consensus 239 ~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 239 NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999888777
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.76 E-value=8.4 Score=35.64 Aligned_cols=61 Identities=20% Similarity=0.097 Sum_probs=48.4
Q ss_pred HhccCChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 002594 63 LAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (903)
Q Consensus 63 i~~~~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~ 123 (903)
++..........+|...+..|+|.-|...++.++..+|++..+...++.++.++|.-.+..
T Consensus 64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 4444455557788999999999999999999999999999999999999999998766544
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.76 E-value=69 Score=33.02 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILK 409 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~ 409 (903)
+....+++..|+..+|+.-|+.=+.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4455677777777777777776554
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.93 E-value=1.6e+02 Score=36.11 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=39.5
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 002594 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 72 ~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~----a~~~l-G~~~~~lg~~~eA~~~~~~a 129 (903)
+...-..+++...|++|+..++....-+|.-.. ..++. |.-++..|++++|+..|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 344455666777788888877776665554322 12222 67788999999999999998
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.52 E-value=34 Score=40.52 Aligned_cols=206 Identities=14% Similarity=0.028 Sum_probs=115.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 421 RGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (903)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 499 (903)
.-..+.+..-|+-|+...+.- ..+++. ...+...|..++..|++++|...|-+.+..-.. +.+. .-+......
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~Vi----~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEVI----KKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHHH----HHhcCHHHH
Confidence 334556666777777665432 222322 456777888888899999999988888764321 1111 122344445
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKALECLQQV 577 (903)
Q Consensus 500 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 577 (903)
.+-..+++...+..-.+.+--..|-.+|.++++.+.-.++.++. +.-... .-..-.++.+.+-+++|..+..+.
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----DKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----CCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 55556666666665555555667778888888877755554432 211000 111123344445555555444332
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (903)
Q Consensus 578 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 647 (903)
-. +.. .+-.++..+++|++|+.++... .|.. .......|..+.... .++-...+-+.+.
T Consensus 490 ~~----he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h~-P~~t~~ili~~~t 549 (933)
T KOG2114|consen 490 KK----HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEHD-PEETMKILIELIT 549 (933)
T ss_pred cc----CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHh
Confidence 11 122 2344567789999999988753 3332 345566777776643 4555555544443
No 390
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.23 E-value=44 Score=34.18 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILKEDP 412 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~~~p 412 (903)
+.+|....+.|+|++++.++++++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3344444444444444444444444433
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.67 E-value=1.1e+02 Score=31.94 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC------CCc
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQSN------PSA 448 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~ 448 (903)
.+.++.-+..+++.|++..|.++..-.++. .+.+......++.+......-+ +-..+..++++-. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 567778888888999988888777665543 2445555566666666554322 3344444554432 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSK 474 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (903)
+..+..+|..+...|++.+|..+|-.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 78999999999999999888877743
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.89 E-value=10 Score=39.97 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 002594 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (903)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 563 (903)
|..+|.+|+.+.|.+...++.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665544445556666555554
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=74.68 E-value=1e+02 Score=34.67 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDP 412 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 412 (903)
.-.+|..++-.++|+-|...|+.+.+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 34689999999999999999998887543
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.76 E-value=2e+02 Score=34.33 Aligned_cols=127 Identities=10% Similarity=-0.097 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcC
Q 002594 558 TQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (903)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (903)
+..-....+.+.|...+.+......-. ..+...+|.-....+...+|..++..+..... +.........+-...+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333445667788888887754443322 22344445444444336788888887664432 3344444445555888
Q ss_pred CHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhccCCCc
Q 002594 634 EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF 693 (903)
Q Consensus 634 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~p~~ 693 (903)
+++.+...+... |.... ......|..|.++...|+-++|...|..+.. ..+|
T Consensus 327 dw~~~~~~i~~L----~~~~~---~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~~f 378 (644)
T PRK11619 327 DRRGLNTWLARL----PMEAK---EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QRGF 378 (644)
T ss_pred CHHHHHHHHHhc----CHhhc---cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCc
Confidence 998877777663 22211 2345788889998889999999999988754 4444
No 395
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.55 E-value=1.1e+02 Score=34.27 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002594 417 ALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (903)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (903)
....+|...+..++|+.|...|+.+..-..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 356689999999999999999998876443
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.45 E-value=79 Score=32.59 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 586 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
.....+|..|+..|++++|+.+|+.+....... ..++..+..|+..+|+.++.+.+.-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345577888888888888888888886543321 356677778888888877776655443
No 397
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.44 E-value=12 Score=39.36 Aligned_cols=62 Identities=19% Similarity=0.091 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002594 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 536 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (903)
|+.+|.+|+.+.|++...++.+|.++...|+.=.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554433334455555554444
No 398
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.00 E-value=54 Score=39.00 Aligned_cols=244 Identities=16% Similarity=0.020 Sum_probs=140.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCH
Q 002594 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGES 465 (903)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 465 (903)
-..+++..-|+-|+.+.+.- ..+++ -...+...|..++..|++++|...|-+.+.. +|...--. +......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHH
Confidence 34567778888888776543 22222 2356777889999999999999999999864 33322111 2333344
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHH
Q 002594 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY---TYLGLALSSIGEYKKAEEAHLK 542 (903)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~ 542 (903)
.+-..+++...+..-.+.+--..|-.+|.++++.++-.+..++ .+ ..... -..-.++.+.+-.++|.....+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4555666666666555666666788899999998876555543 33 11111 1122344445555555544443
Q ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHhHcc-C-CCCH
Q 002594 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D-PSNI 619 (903)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~-p~~~ 619 (903)
.-. +.. .+-.++...++|++|+.++... .|.. .......|..+... ..++-...+-+.+.. . +...
T Consensus 489 ~~~----he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~ 557 (933)
T KOG2114|consen 489 FKK----HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKG 557 (933)
T ss_pred hcc----CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCC
Confidence 211 121 2334566789999999998763 2322 34456677777664 445555555444432 2 1111
Q ss_pred HHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 620 ECL----YLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 620 ~~~----~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
... .-.-.+..-.+++..-..+++...+..|+.++
T Consensus 558 ~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 558 KSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred chhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 111 11222334456677777777767777777655
No 399
>PF13041 PPR_2: PPR repeat family
Probab=72.58 E-value=10 Score=27.65 Aligned_cols=34 Identities=6% Similarity=0.208 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc--CChhHHhh
Q 002594 41 IELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICN 74 (903)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~--~~~~~~~~ 74 (903)
..+..+++.|++++|.++|++..+.. |+...|.-
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34556777788888888888777766 66555543
No 400
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.03 E-value=1.7e+02 Score=32.59 Aligned_cols=211 Identities=16% Similarity=0.054 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------HHHHHH-HcC---CHHHHHHHHHHHHHhCCCCH---HH
Q 002594 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNF-KFK---DFNAAVEDLSACVKLDKENK---SA 519 (903)
Q Consensus 453 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------la~~~~-~~g---~~~~A~~~~~~al~~~p~~~---~~ 519 (903)
-.+-....+.++...|..++.-...++|+....... +-.+.. .-. +..+=+..++.+-..+-+.. ..
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~ 381 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHY 381 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 333344566788888888888888888865421111 111111 111 11122233333333333322 33
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHH---------hhCC---CC
Q 002594 520 YTYLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE--CLQQVL---------YIDK---RF 584 (903)
Q Consensus 520 ~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al---------~~~p---~~ 584 (903)
+..-|.-+.+.|. -++|+..++.+++..+.+..+-...-.. -...|.+|+. .+.+.+ .+.| .+
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 4455777888887 7889999999999888876443322111 1112223321 122222 1222 23
Q ss_pred HHHHHHH--HHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 002594 585 SKAYHLR--GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (903)
Q Consensus 585 ~~~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 662 (903)
.+.-..+ |..++..|+|.++.-+-.=..++.| ++.++..+|.|+....+|++|..++...-- +.+--+.....+++
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~ 537 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALA 537 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHH
Confidence 4444444 4557889999999999999999999 799999999999999999999999876421 22223344555666
Q ss_pred HHHHH
Q 002594 663 FYQKE 667 (903)
Q Consensus 663 ~~~~~ 667 (903)
..++.
T Consensus 538 lCqKh 542 (549)
T PF07079_consen 538 LCQKH 542 (549)
T ss_pred HHHHh
Confidence 55553
No 401
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.46 E-value=2.8e+02 Score=34.87 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 589 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
..|+.-+...+++-+|-+.....+. +|..+ -..|++...+++|+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s-d~~~a------v~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS-DPEEA------VALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc-CHHHH------HHHHhhHhHHHHHHHHHHh
Confidence 4555566667777777666665554 22211 1233344455666554443
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.15 E-value=2.6e+02 Score=34.40 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCChhH------HhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHH
Q 002594 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQD------ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (903)
Q Consensus 39 ~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~------~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~ 107 (903)
.+.+.-.++..+.|++|+..-+-....+|.... ....|.-++.+|+|++|+..+.+ ++.+|..+...|
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~-~~~d~~~vi~lf 383 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEK-SEIDPRHVISLF 383 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hccChHHHHHhc
Confidence 455666788889999999865533332222111 22336778999999999999988 566884444333
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.62 E-value=36 Score=33.75 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCcHH
Q 002594 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 594 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
-+.+.+...+|+...+.-++..|.+......+-.+|+-.|++++|...++-+-.+.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 4556677788888888888888888887777888888888888888888888888877643
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.21 E-value=1.1e+02 Score=31.18 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHhHc-----cCCCCH---HHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Q 002594 602 KKAIKDLSSGLG-----IDPSNI---ECLYLRASCY-HAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 602 ~eA~~~~~~al~-----~~p~~~---~~~~~la~~~-~~~g~~~~A~~~~~~al~l 648 (903)
+.|...|++|++ +.|.+| ....+.+..| ..+|+.++|+...++|++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 445555555543 356655 3444455554 4478888888877777654
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.09 E-value=72 Score=35.30 Aligned_cols=59 Identities=22% Similarity=0.138 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 002594 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKS--AYTYL--GLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 487 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~ 545 (903)
...+..++..++|..|...+..+...-|.... .+..+ |..+...-++.+|.+.++..+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455566667777777777666654222222 22222 3334455666666666666554
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.64 E-value=46 Score=34.49 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (903)
Q Consensus 588 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 646 (903)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44566778888889999999999999888888888888888888888888888777653
No 407
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=6.3 Score=41.70 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=54.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 002594 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (903)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (903)
.+...+..++++.|..-+.+++..-...+ ..+..+... +...+.+.-.....+++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s------------~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQS------------RDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccc------------ccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 45567778888888888887765321000 000000000 001111111222233444444445555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002594 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 521 (903)
.|+..-..++..++....+++..+..+....++++|++.+..+....|++.....
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 5554444444444444445555555555555555555555555555555544433
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.99 E-value=16 Score=40.18 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=46.9
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 73 CNRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (903)
Q Consensus 73 ~~ra~~~~~lg~~~~Ai~~~~~Al~l~---------P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al 130 (903)
..+...+.-+|||..|++..+- |+++ +-++..+|..|-+|+-+++|.+|++.|..+|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566688889999999998754 4443 3356689999999999999999999999995
No 409
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=66.91 E-value=1.3e+02 Score=29.12 Aligned_cols=184 Identities=18% Similarity=0.058 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002594 449 GEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK-----FKDFNAAVEDLSACVKLDKENKSAYTY 522 (903)
Q Consensus 449 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~ 522 (903)
+++-..||..+.. +.++++|...|..--.-+. .+...+.+|..++. .++...|++.+..+-. .+.+.+..+
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~ 110 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRY 110 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhh
Confidence 4444444444332 2344555554444333222 23333444433332 2345555555555543 334455555
Q ss_pred HHHHHHHc-----C--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002594 523 LGLALSSI-----G--EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (903)
Q Consensus 523 la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 595 (903)
+|.++..- + +.++|++++.++-.+. +..+-++|...|+. ..+++ ....|.... -...+..+
T Consensus 111 ~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~--g~~k~-------~t~ap~~g~-p~~~~~~~ 178 (248)
T KOG4014|consen 111 LGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG--GKEKF-------KTNAPGEGK-PLDRAELG 178 (248)
T ss_pred hhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc--cchhh-------cccCCCCCC-Ccchhhhh
Confidence 55554431 1 2455666666655433 33444444444432 11111 111221000 00122333
Q ss_pred HHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhc
Q 002594 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLE 649 (903)
Q Consensus 596 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~l~ 649 (903)
.-..+.+.|.++--+|-+++ ++.+.-++.+.|..- .+.++|..+-.+|.++.
T Consensus 179 ~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 33455666666666666553 345555555555421 24566666666665553
No 410
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=66.86 E-value=19 Score=33.32 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (903)
.+..+..+...+..|++.-|.++.+.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 677788888888899999999999999999999888888888887776543
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.16 E-value=1.5e+02 Score=29.52 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002594 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (903)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (903)
..++..+..++|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4567888999999999999999999999999999999999999999999999999998863
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.76 E-value=13 Score=26.60 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002594 622 LYLRASCYHAIGEYREAIKDYDAALD 647 (903)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~ 647 (903)
.+.+|.+|..+|+++.|.+.++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999995
No 413
>PRK12798 chemotaxis protein; Reviewed
Probab=63.65 E-value=2.4e+02 Score=31.21 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAIKDYDAA 645 (903)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 645 (903)
...|..++..-.-.|+.+-|.-.-++++.+... ...+.+..+....-..++++|.+.+...
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 456667777777777777777777777766422 2344555555555556677777666543
No 414
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=63.30 E-value=1.5e+02 Score=28.67 Aligned_cols=185 Identities=16% Similarity=0.107 Sum_probs=115.4
Q ss_pred ccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 002594 379 ISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEAW 452 (903)
Q Consensus 379 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~ 452 (903)
..++....+|..+- -+.+|++|...|..-...+ .++...+.+|..++. .++...|+..+..+-. .+.+.+-
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 34666677776553 3568888888887765433 345666666665543 3578899999988876 5567777
Q ss_pred HHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002594 453 KRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (903)
Q Consensus 453 ~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 525 (903)
..+|.++..- + +..+|.+++.++-.+. +..+.++|...|+.-. ++ +....|..... ...+.
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~~~ 176 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDRAE 176 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cchhh
Confidence 7888777643 2 3788999999987765 5566666666655432 11 11112211000 11234
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 002594 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYI 580 (903)
Q Consensus 526 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 580 (903)
.+....+.+.|.++--++-++. ++.+-.++.+.|.. -.+-++|..+-.++.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 4455667888888888877664 45666666666643 23567777777777665
No 415
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=63.22 E-value=4e+02 Score=33.61 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 002594 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 611 (903)
..|+.-+...+++-+|-++....+.. |. .+ -.+|.+...|++|+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~~--~a----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-PE--EA----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-HH--HH----HHHHhhHhHHHHHHHHHHhc
Confidence 45555666677777666666554421 11 11 12233444566666555443
No 416
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.01 E-value=1.4e+02 Score=32.70 Aligned_cols=55 Identities=20% Similarity=0.126 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHH--HHHHHHHcCCHHHHHHHHHH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIG--RGTARAFQRELEAAISDFTE 440 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~--la~~~~~~g~~~~A~~~~~~ 440 (903)
.++..+++.++|..|...|.+++...+.. ...+.. .|..+...-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45668999999999999999999875421 223333 44455677889999999986
No 417
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.61 E-value=2e+02 Score=29.88 Aligned_cols=168 Identities=19% Similarity=0.243 Sum_probs=91.1
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 390 AQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 390 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
......+| ..|++.-...+..+|..-.+|...-.+... .--++.-+.++..++.-+|++...|...-.++.
T Consensus 40 a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le 119 (328)
T COG5536 40 AKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLE 119 (328)
T ss_pred HHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHH
Confidence 33333333 356666666666666655555444333332 112344556677777777777777766666655
Q ss_pred Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHH
Q 002594 461 AL--GESVEAIQDLSKALEFEPNSADILHERGIVN------FKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSS 529 (903)
Q Consensus 461 ~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~ 529 (903)
.. .++..-+...++.++.++.+..+|...-.+. .....+..-.++-..++..++.+..+|...- ...+.
T Consensus 120 ~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~ 199 (328)
T COG5536 120 LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN 199 (328)
T ss_pred hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh
Confidence 44 4566666677777777777665554433333 2333444445555666666777777666552 22222
Q ss_pred cCC------HHHHHHHHHHHHHhCcccHHHHHHH
Q 002594 530 IGE------YKKAEEAHLKAIQLDRNFLEAWGHL 557 (903)
Q Consensus 530 ~g~------~~~A~~~~~~al~~~p~~~~~~~~l 557 (903)
.|+ +++-+++.-.++-.+|++..+|..+
T Consensus 200 ~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 200 RGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred hcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 332 2333444444455566665555443
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.52 E-value=53 Score=36.31 Aligned_cols=59 Identities=20% Similarity=0.113 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 555 GHLTQFYQDLANSEKALECLQQVL--------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
..|.+++.-+|+|..|++.++..- ...+-+...++..|-+|..+++|.+|+..|...+-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665554321 01122345567777777777777777777776653
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.23 E-value=20 Score=22.76 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 002594 467 EAIQDLSKALEFEPNSADIL 486 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~ 486 (903)
.|...|++++...|.++.+|
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 5 RARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHCCCChHHH
Confidence 33333333333333333333
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.86 E-value=24 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 396 KYASAISIFDQILKEDPMYPEALIGRG 422 (903)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la 422 (903)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554433
No 421
>PF12854 PPR_1: PPR repeat
Probab=60.63 E-value=21 Score=23.67 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666666666666666666654
No 422
>PF12854 PPR_1: PPR repeat
Probab=60.61 E-value=21 Score=23.70 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 103 LQAYILKGCAFSALGRKEEALSVWEK 128 (903)
Q Consensus 103 ~~a~~~lG~~~~~lg~~~eA~~~~~~ 128 (903)
...|..+-.+|.+.|+.++|...|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45777888888888888888887765
No 423
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.40 E-value=1.4e+02 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHhHccCCCCHHHHHHHHHHH
Q 002594 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (903)
Q Consensus 599 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 629 (903)
++++.|++++.+ +.+++.|..++..+
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 455555555553 22344555554443
No 424
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.27 E-value=3.6e+02 Score=32.14 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HH---HH
Q 002594 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ---AR---AA 461 (903)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~---~~ 461 (903)
-.+++-.|+|+.|++++-+ .+.+..--..+|.++...|-+...-..-...+..++.++.. .+++. .| +.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3567788999999999876 22333222334444444444433333225555555554321 22222 22 23
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHHcCCHHHH--------------HHHHHHHHHhCCCCH---HHHHH
Q 002594 462 LGESVEAIQDLSKALEFE-PNSA-DILHERGIVNFKFKDFNAA--------------VEDLSACVKLDKENK---SAYTY 522 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~-p~~~-~~~~~la~~~~~~g~~~~A--------------~~~~~~al~~~p~~~---~~~~~ 522 (903)
..+..+|+++|--+-... |... -.+..+..+....++++.= ++...+.+....... .+...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 567888888876543332 2222 1333344444444433322 222222222332222 33444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (903)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (903)
.|.-....|++++|+.+|.- .|+++.++.++.+.+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~L---------------------a~~~d~vl~lln~~L 454 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHL---------------------AEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------------TT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH---------------------HhhHHHHHHHHHHHH
Confidence 56666777888877776654 346666666666655
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.99 E-value=18 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 385 LSRGIAQVNEGKYASAISIFDQILK 409 (903)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~al~ 409 (903)
+.+|..|+..|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4667777777777777777777774
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=58.57 E-value=4e+02 Score=32.14 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=137.7
Q ss_pred HHHHhhccCCccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHH
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQV---NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-------RELEAAISDF 438 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~ 438 (903)
....+....|.++..|+....-.. ..++-.++...|++++.. -+.+..|...+...... ++++.....|
T Consensus 135 ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf 213 (881)
T KOG0128|consen 135 ARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVF 213 (881)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHH
Confidence 334455556666666665544333 346788889999999863 34566666666655433 5677788888
Q ss_pred HHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHH---HHHHHcCCHHHHHH
Q 002594 439 TEAIQSNPS-------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI----LHERG---IVNFKFKDFNAAVE 504 (903)
Q Consensus 439 ~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la---~~~~~~g~~~~A~~ 504 (903)
.+++..--. ....+..+-..|...-..+.-+.++...+... -+.++ +.... .......+++.|..
T Consensus 214 ~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~ 292 (881)
T KOG0128|consen 214 ERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALK 292 (881)
T ss_pred HHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHH
Confidence 888864322 23455556666666666677788888887764 33221 22222 11233456777766
Q ss_pred HHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCCHHHHHHHHHH
Q 002594 505 DLSACV-------KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLANSEKALECLQQ 576 (903)
Q Consensus 505 ~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 576 (903)
-+.+.+ +..|.....|..+-......|+.-.-...+++++...+.+...|...+... ..++-.+.+...+.+
T Consensus 293 ~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~r 372 (881)
T KOG0128|consen 293 NLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPR 372 (881)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccch
Confidence 644443 333444455666677777888888888889999988888888998887665 344555566677777
Q ss_pred HHhhCCCCHHHH
Q 002594 577 VLYIDKRFSKAY 588 (903)
Q Consensus 577 al~~~p~~~~~~ 588 (903)
++...|-....|
T Consensus 373 a~R~cp~tgdL~ 384 (881)
T KOG0128|consen 373 AVRSCPWTGDLW 384 (881)
T ss_pred hhcCCchHHHHH
Confidence 777766544444
No 427
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.28 E-value=1.5e+02 Score=34.06 Aligned_cols=133 Identities=17% Similarity=0.069 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 002594 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (903)
Q Consensus 484 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 563 (903)
+....++..+..+|-.++|++. .++. . ..-.+..+.|+++.|..+..++ ++..-|..||.+...
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~-------s~D~-d---~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL-------STDP-D---QRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc-------CCCh-h---hhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh
Confidence 3455566666666666665543 3322 1 1233455778888877655443 456678888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (903)
Q Consensus 564 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (903)
.+++..|.++|.++.... .|-.++...|+.+--...-..+-+....| .--.+|...|+++++.+.+.
T Consensus 679 ~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHH
Confidence 888888888888775431 22223334444432222222222222221 11235677888888877765
Q ss_pred HH
Q 002594 644 AA 645 (903)
Q Consensus 644 ~a 645 (903)
+.
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 54
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.21 E-value=2.9e+02 Score=30.37 Aligned_cols=93 Identities=16% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHH
Q 002594 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--------RFSKAY 588 (903)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~ 588 (903)
+..+|..|...|+.+.|++.|-++-.... .....+.++..+-...|+|.....+..++...-. -.+.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 33444444444444444444444322211 1133344444444444444444444444432210 001223
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhH
Q 002594 589 HLRGLLLHGLGQHKKAIKDLSSGL 612 (903)
Q Consensus 589 ~~la~~~~~~g~~~eA~~~~~~al 612 (903)
..-|.+...+++|+.|..+|-.+.
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333444444556666666655443
No 429
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.92 E-value=1.5e+02 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002594 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (903)
.+.....+.+++.++..++.++..+..+..+|.+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 3445555555555555544444445555555443
No 430
>PRK12798 chemotaxis protein; Reviewed
Probab=57.60 E-value=3e+02 Score=30.44 Aligned_cols=270 Identities=12% Similarity=0.101 Sum_probs=171.4
Q ss_pred CCChhhhhhhhhhhhhhhHHhhHHHHhhHHHHHHHhhcc-CCccHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDFR-----LSRGIAQVNEGKYASAISIFDQILKED 411 (903)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~a~~~~~~g~~~~A~~~~~~al~~~ 411 (903)
...+|+.+..+.+..+............+...+.++-.. ...+++.| ..-+.+|.-.|--.+.+ +.++..+
T Consensus 31 ~~~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~Aa~iy~lSGGnP~vl---r~L~~~d 107 (421)
T PRK12798 31 VLEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVDAALIYLLSGGNPATL---RKLLARD 107 (421)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchhHHHhhHhcCCCHHHH---HHHHHcC
Confidence 456788888887777776655555555555555444321 11111111 22344454444434333 3444545
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 002594 412 PM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQ-ARAALGESVEAIQDLSKALEFEPNSA---DI 485 (903)
Q Consensus 412 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 485 (903)
+. +.+.-...|..-+-.|+-.+|.+.+..+-.. .|.....+..|.. ......+...|+..|+.+--..|... .+
T Consensus 108 ~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAA 187 (421)
T PRK12798 108 KLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAA 187 (421)
T ss_pred CCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 43 5666677777778889999999988765432 2333344444444 34556789999999999999999752 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccc-HHHHHHHHHH
Q 002594 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQL-DRNF-LEAWGHLTQF 560 (903)
Q Consensus 486 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~~ 560 (903)
+..-..+....|+.+++..+..+.+.....++.+ +..+........+-.. ...+...+.. +|.. ...|..++..
T Consensus 188 LRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~ 266 (421)
T PRK12798 188 LRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARA 266 (421)
T ss_pred HHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4445556678999999999999988887776543 3334444444443222 2234555544 4433 6788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHh
Q 002594 561 YQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (903)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~a 611 (903)
-.-.|+.+-|.-.-++++.+... ...+....+.+..-..++++|+..+...
T Consensus 267 Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 267 ALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99999999999999999987532 3445555555666677888888877754
No 431
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.09 E-value=2.6e+02 Score=29.00 Aligned_cols=179 Identities=18% Similarity=0.166 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHH
Q 002594 433 AAISDFTEAIQSNPSAGEAWKRRGQARAA----L----GESVEAIQDLSKALEFEPNSADILHERGIVNFKF--KDFNAA 502 (903)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~----~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 502 (903)
.|++.-...+..+|....+|...-.+... . --.+.-+..+..+++-+|.+..+|...-.++... .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 35555555555666655555443333322 1 1245567788889999999999988887777665 678888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCcccHHHHHHH---HHHHHHcCC------H
Q 002594 503 VEDLSACVKLDKENKSAYTYLGLAL------SSIGEYKKAEEAHLKAIQLDRNFLEAWGHL---TQFYQDLAN------S 567 (903)
Q Consensus 503 ~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~ 567 (903)
+...++.+..++.|...|.+.-.+. ..-..+..-.++-..++..++.+..+|.+. -......|+ +
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l 209 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYL 209 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHH
Confidence 8899999999999987776654444 333445555677777888899999888776 333333444 4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHh
Q 002594 568 EKALECLQQVLYIDKRFSKAYHLRGLLLH----GLGQHKKAIKDLSSG 611 (903)
Q Consensus 568 ~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~eA~~~~~~a 611 (903)
++-+++.-.++-.+|++..+|..+-.+.. ..-.+.+-++.+.+-
T Consensus 210 ~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 210 EKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY 257 (328)
T ss_pred HHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 55566666667778888777665433322 223455666666443
No 432
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.79 E-value=72 Score=29.00 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 594 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
++...|+-++--+.+.........+|+.+..+|.+|.+.|+..+|.+.+.+|.+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445666666666666666555556788888888888888888888888877664
No 433
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=54.15 E-value=67 Score=35.43 Aligned_cols=109 Identities=16% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 002594 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE-EAHLKAIQ 545 (903)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 545 (903)
+|+.+++.++...|.+......+..+|..+|-...|...|...--..-.....-+.+..-+...|....+. ..+..++.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (903)
Q Consensus 546 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (903)
....+..-.-......++.|.|.+..+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.80 E-value=1.9e+02 Score=30.04 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH
Q 002594 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAY 588 (903)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 588 (903)
+++.++|..|.+.++.+.+.+.+.+.++..-.. .-....+|.+|..+.-.++.++..+..++...+.. ..-
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 455666666666666666666555554432111 12223344444444444444444444444433211 111
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHhHcc
Q 002594 589 HLRGLLLHGLGQHKKAIKDLSSGLGI 614 (903)
Q Consensus 589 ~~la~~~~~~g~~~eA~~~~~~al~~ 614 (903)
...|.......++.+|-..+...+..
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 22333344444555555555554443
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.59 E-value=1.7e+02 Score=31.03 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC---HHH
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IEC 621 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 621 (903)
.+++.+.|..|.+.|+-+.|.+.+.+..+..- +-......+|..|....-..+.++-.+..++...+- -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 45666666666777777777666666554321 112234445555554444444444444444433221 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002594 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649 (903)
Q Consensus 622 ~~~la~~~~~~g~~~~A~~~~~~al~l~ 649 (903)
....|.......+|.+|...|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 2334444555566666666666655443
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.01 E-value=3.7e+02 Score=32.04 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=16.1
Q ss_pred HHHHHHHhhcHHHHHHHHhhhhccCCC
Q 002594 666 KEIALYTASKINSEFCWFDIDGDIDPL 692 (903)
Q Consensus 666 ~~~~~~~~~~~~~A~~~l~~a~~~~p~ 692 (903)
....++..++++.|+..+++.. +=|.
T Consensus 511 ~ff~~~~~g~~~~AL~~i~~L~-liP~ 536 (613)
T PF04097_consen 511 EFFDLYHAGQYEQALDIIEKLD-LIPL 536 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT--S-S
T ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC
Confidence 3445577899999999886444 5553
No 437
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.76 E-value=6.2e+02 Score=31.97 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------------------HHHHHHHHHHHHcCCH
Q 002594 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------------------EAWKRRGQARAALGES 465 (903)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------------------~~~~~la~~~~~~g~~ 465 (903)
+...+.+|.+|...|...+|+.+|.+|..-..+.. ..|...-+++..-+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 44556677777777777777777776654221110 1122222334444555
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCH
Q 002594 466 VEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEY 533 (903)
Q Consensus 466 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 533 (903)
+.+++...+|++.-|++ +..+..+-.-+..+|.+-+|...+ -.+|+.. ..+..+-.+++..|..
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccch
Confidence 66666666666544332 223334444455566666655433 2344422 2344455555555543
No 438
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.22 E-value=1e+03 Score=34.19 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHH---HHHHHHHHCC-CHHHHHHHHHHhHcc---CCCCHHHHH
Q 002594 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKR-FSKAYH---LRGLLLHGLG-QHKKAIKDLSSGLGI---DPSNIECLY 623 (903)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~---~la~~~~~~g-~~~eA~~~~~~al~~---~p~~~~~~~ 623 (903)
.+....|.+....|-++-++..+.+...+..- ..++.. .-+.+|.... ....+++..+..--. +...++.+.
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~ 2816 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFT 2816 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHH
Confidence 44455666677777777777777776654321 112222 2233444333 444444444322110 112357788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 002594 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665 (903)
Q Consensus 624 ~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 665 (903)
..|..+.++|+.++|...|..|++++..-+.+|..-+...++
T Consensus 2817 lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2817 LKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred hhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 899999999999999999999999988877777655544333
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.03 E-value=31 Score=34.80 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CChhH------------HhhHHHHHHHhhc-HHHHH-HHHHHHHH-hC-CCChhHHH--
Q 002594 47 CSLRNWSKAIRILDSLLAQS-YEIQD------------ICNRAFCYSQLEL-HKHVI-RDCDKALQ-LD-PTLLQAYI-- 107 (903)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~------------~~~ra~~~~~lg~-~~~Ai-~~~~~Al~-l~-P~~~~a~~-- 107 (903)
|-.|+|+.|+++..-||+.+ +.|.- .+.-|......|+ ++-+. ..+..... .+ |+-+.|-+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 55689999999999999998 43322 2233334444444 11121 11222211 11 66555544
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHhhccCCh
Q 002594 108 LKGCAFS---------ALGRKEEALSVWEKGYEHALHQS 137 (903)
Q Consensus 108 ~lG~~~~---------~lg~~~eA~~~~~~al~~~~~~~ 137 (903)
..|..++ ..++...|+..+++|+.+++...
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 4455553 34678899999999988887654
No 440
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=47.68 E-value=55 Score=26.51 Aligned_cols=23 Identities=9% Similarity=-0.001 Sum_probs=10.8
Q ss_pred HHHHHHHHhCCCChhHHHHHHHH
Q 002594 90 RDCDKALQLDPTLLQAYILKGCA 112 (903)
Q Consensus 90 ~~~~~Al~l~P~~~~a~~~lG~~ 112 (903)
..+.+++...|+.......++.+
T Consensus 34 e~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 34 EVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHhCCChHHHHHHHHHH
Confidence 33344445556665544444433
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.30 E-value=86 Score=36.77 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCH
Q 002594 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARA---ALGESVEAIQDLSKALEFE-PNSA 483 (903)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~ 483 (903)
.++...++-..|....+|+.-+.+.+..-. -|+... +.+..+.++- .-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 456666666677777777766666655433 332211 1112222222 2356666776666666543 3345
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 484 DILHERGIVNFK---------FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (903)
Q Consensus 484 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 531 (903)
+.+..-|.+|-. .+..+.|++.|+++++..|.... -.+++.++...|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 556666666543 23445566666666666654322 233444444433
No 442
>PF13041 PPR_2: PPR repeat family
Probab=47.08 E-value=76 Score=22.94 Aligned_cols=30 Identities=3% Similarity=0.030 Sum_probs=16.6
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q 002594 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (903)
Q Consensus 68 ~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~ 97 (903)
+...|.-+-.+|.+.|++++|.+.+++..+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444445556666666666666665554
No 443
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.57 E-value=2.4e+02 Score=32.59 Aligned_cols=134 Identities=18% Similarity=0.127 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (903)
.+..-..+..+-.+|-.++|++ ..++ +.-.+ .+..+.|+++.|.....++ ++..-|..||.+..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~-------~s~D-~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALE-------LSTD-PDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhh-------cCCC-hhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHh
Confidence 3455566666666776666654 3333 22222 3446779999888765554 55677899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002594 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (903)
Q Consensus 461 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (903)
..+++..|.+++.++..... |-.++...|+-+--...-..+-+....|. --.+++..|+++++.+.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~~~--------LlLl~t~~g~~~~l~~la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDLGS--------LLLLYTSSGNAEGLAVLASLAKKQGKNNL-----AFLAYFLSGDYEECLELL 744 (794)
T ss_pred hcccchhHHHHHHhhcchhh--------hhhhhhhcCChhHHHHHHHHHHhhcccch-----HHHHHHHcCCHHHHHHHH
Confidence 99999999999998754321 11222233333322222222222222221 123566778888887776
Q ss_pred HHH
Q 002594 541 LKA 543 (903)
Q Consensus 541 ~~a 543 (903)
.+.
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 554
No 444
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.30 E-value=67 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=6.0
Q ss_pred HHCCCHHHHHHHHH
Q 002594 596 HGLGQHKKAIKDLS 609 (903)
Q Consensus 596 ~~~g~~~eA~~~~~ 609 (903)
-..|++.+|+.+|+
T Consensus 17 D~~gr~~eAi~~Y~ 30 (75)
T cd02682 17 EKEGNAEDAITNYK 30 (75)
T ss_pred HhcCCHHHHHHHHH
Confidence 33444444444443
No 445
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.21 E-value=30 Score=39.11 Aligned_cols=81 Identities=10% Similarity=0.172 Sum_probs=41.1
Q ss_pred hhhhhhHhhhhchhhhhhHHhhccccchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----CChhH--HhhH
Q 002594 2 LKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS----YEIQD--ICNR 75 (903)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~----~~~~~--~~~r 75 (903)
||++++.--|...-+.+.=-.+..|.+.+++++.. +-..++.+|.+||... .|... |...
T Consensus 259 lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~--------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~ 324 (618)
T PF05053_consen 259 LQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTP--------------GRPTPLELFNEAISSARTYYNNHHVYPYTYL 324 (618)
T ss_dssp HHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T--------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHH
T ss_pred HHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCC--------------CCCCHHHHHHHHHHHHHHHhcCCccccceeh
Confidence 45666666666555555433333333333333322 1244566666666542 33322 6677
Q ss_pred HHHHHHhhcHHHHHHHHHHHH
Q 002594 76 AFCYSQLELHKHVIRDCDKAL 96 (903)
Q Consensus 76 a~~~~~lg~~~~Ai~~~~~Al 96 (903)
|.+|++.++|.+|+..+-.|-
T Consensus 325 gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 325 GGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887766653
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.07 E-value=3.6e+02 Score=32.05 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=79.4
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CC
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------ALIGRGTARA---FQRELEAAISDFTEAIQSN-PS 447 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~ 447 (903)
-..++.-..+-..|....+|+.-+++.+.+ +.-|+... ..+..+.++- .-|+-++|+...-.+++.. |-
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 345777777777888889999888887765 34453211 1222333332 2378889999888888764 44
Q ss_pred cHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002594 448 AGEAWKRRGQARAA---------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (903)
Q Consensus 448 ~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 498 (903)
.++.+...|.+|.. .+..+.|++.|+++.+..|.. ..-.+++.++...|+
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGE 335 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhh
Confidence 56677777777654 356788999999999999843 344556666666553
No 447
>COG3013 Uncharacterized conserved protein [Function unknown]
Probab=43.99 E-value=8.7 Score=34.49 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=10.3
Q ss_pred hcccCCCCccccc
Q 002594 878 NSGFGSHTPMILG 890 (903)
Q Consensus 878 ~~~~~~~~~~~~~ 890 (903)
.-||+|||||.--
T Consensus 128 th~fnSq~PM~dK 140 (168)
T COG3013 128 THGFNSQTPMWDK 140 (168)
T ss_pred cCCCcccChhHHH
Confidence 4589999999643
No 448
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=42.95 E-value=1.3e+02 Score=27.49 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=22.7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHc
Q 002594 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 613 (903)
..|+-++-.+.+.........++..+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444444444444444433334455555555555555555555555555543
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.87 E-value=3.2e+02 Score=27.02 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCC
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNP 446 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p 446 (903)
...+..+-...+..|+++.|-++|--++...+-+......+|.- +...+.-....++++......|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 44455666677889999999999999998887777777777754 4444444444466666555444
No 450
>PF03887 YfbU: YfbU domain; InterPro: IPR005587 This presumed family is about 160 residues long. In Q9EUM2 from SWISSPROT it is associated with a helix-turn-helix domain. This suggests that this may be a ligand-binding family.; PDB: 1WPB_J.
Probab=42.62 E-value=9 Score=36.43 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.1
Q ss_pred hcccCCCCcccccc
Q 002594 878 NSGFGSHTPMILGQ 891 (903)
Q Consensus 878 ~~~~~~~~~~~~~~ 891 (903)
+.||||||||+--.
T Consensus 126 ~~~~NSh~pm~~kY 139 (166)
T PF03887_consen 126 EHDFNSHMPMLDKY 139 (166)
T ss_dssp TTTTB-SS--HHHH
T ss_pred CCCCCccchHHHHH
Confidence 47999999997543
No 451
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.43 E-value=43 Score=27.16 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHH
Q 002594 429 RELEAAISDFTEAIQ 443 (903)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (903)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 566666666666654
No 452
>PRK09687 putative lyase; Provisional
Probab=41.48 E-value=4.5e+02 Score=27.68 Aligned_cols=221 Identities=12% Similarity=-0.036 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHH
Q 002594 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES----VEAIQDLSKALEFEPNSADILHERG 490 (903)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la 490 (903)
..........+...|. +++...+.+++ ...++.....-+.++.+.|+. .++...+...+..+| ++.+....+
T Consensus 37 ~~vR~~A~~aL~~~~~-~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A~ 112 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-QDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASAI 112 (280)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 3444444444444443 33334444432 223455555555566666653 345555555544444 344443333
Q ss_pred HHHHHcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Q 002594 491 IVNFKFKD-----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (903)
Q Consensus 491 ~~~~~~g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 565 (903)
..+-..+. ...+...+..++. ++ +..+....+.++...++ ++|+..+..++.- + +..+...-+..+-..+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~-D~-~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-~-~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAF-DK-STNVRFAVAFALSVIND-EAAIPLLINLLKD-P-NGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhh-CC-CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-C-CHHHHHHHHHHHhcCC
Confidence 33333321 1223333333322 22 55666666666666665 5677777777752 2 2233333333333322
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002594 566 -NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (903)
Q Consensus 566 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 644 (903)
..+.+...+..++. ..+..+...-...+.+.|+ ..|+..+-+.++... .....+.++-..|.. +|+..+.+
T Consensus 188 ~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 188 YDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 24567777777763 2345555555666666666 578888888877422 345666777777874 78888888
Q ss_pred HHhhccCc
Q 002594 645 ALDLELDS 652 (903)
Q Consensus 645 al~l~p~~ 652 (903)
++..+|+.
T Consensus 260 l~~~~~d~ 267 (280)
T PRK09687 260 LLYKFDDN 267 (280)
T ss_pred HHhhCCCh
Confidence 88877743
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.25 E-value=79 Score=31.10 Aligned_cols=49 Identities=18% Similarity=0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002594 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (903)
Q Consensus 602 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~ 651 (903)
+..++..++.+...|+ +.++..++.++...|+.++|.....++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455566666666674 788888888888888888888888888888883
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.73 E-value=5e+02 Score=28.65 Aligned_cols=54 Identities=13% Similarity=-0.106 Sum_probs=30.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 002594 489 RGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYL--GLALSSIGEYKKAEEAHLK 542 (903)
Q Consensus 489 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 542 (903)
.+..++..++|..|...|..+....+.. ...+..+ |..+...-++++|...+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445666777777777777776654321 1222333 3334456667777777764
No 455
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=40.71 E-value=54 Score=20.95 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc
Q 002594 42 ELAKLCSLRNWSKAIRILDSLLAQS 66 (903)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~ 66 (903)
-+..+++.|++++|+.+|.+..+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3456788888888888888876655
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.38 E-value=4.5e+02 Score=27.46 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=87.7
Q ss_pred CCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002594 445 NPSAGEAW--KRRGQARAALGESVEAIQDLSKALEFE-PNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (903)
Q Consensus 445 ~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~-p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (903)
+|.....+ +..+..-......++-++-+.+.++.. .++ .+++.++|..|.+.++.+.+.+.+.+.+...-..
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 55543332 334444444455566666675555432 222 5789999999999999999999998887754221
Q ss_pred ---HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002594 517 ---KSA---YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (903)
Q Consensus 517 ---~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 583 (903)
.++ ...+|.+|..+.-.++.++.....++...+.. ..-...|...+...++.+|-.++-..+.....
T Consensus 149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 223 34566666666666777777777777654431 22233455666678888888888877765443
No 457
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=39.32 E-value=44 Score=20.86 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=8.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002594 557 LTQFYQDLANSEKALECLQQ 576 (903)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~ 576 (903)
+-..|.+.|++++|...|++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33344444444444444443
No 458
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.27 E-value=4.4e+02 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHc-----cCCCCHH---HHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 002594 601 HKKAIKDLSSGLG-----IDPSNIE---CLYLRASCYH-AIGEYREAIKDYDAALDL 648 (903)
Q Consensus 601 ~~eA~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~l 648 (903)
.+.|...|+.|++ +.|.+|. ...+.+..|. -+++.++|...-++|+.-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467777777765 3466653 3344444444 468888888777766553
No 459
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.95 E-value=96 Score=27.86 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCChhHH
Q 002594 43 LAKLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (903)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (903)
|-.++..|++++|+.+|-+||..+++|..+
T Consensus 70 GE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 70 GEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 345678899999999999999999887764
No 460
>PRK05445 hypothetical protein; Validated
Probab=38.75 E-value=11 Score=35.70 Aligned_cols=11 Identities=55% Similarity=0.782 Sum_probs=9.4
Q ss_pred cccCCCCcccc
Q 002594 879 SGFGSHTPMIL 889 (903)
Q Consensus 879 ~~~~~~~~~~~ 889 (903)
.||||||||.-
T Consensus 125 ~~~NSh~pm~~ 135 (164)
T PRK05445 125 HGFNSQTPMWD 135 (164)
T ss_pred CCCCccchHHH
Confidence 48999999974
No 461
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.77 E-value=3.9e+02 Score=25.90 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc
Q 002594 43 LAKLCSLRNWSKAIRILDSLLAQS 66 (903)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~ 66 (903)
+.+++..|+|+.|+..|.++-.+.
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHH
Confidence 355678888888888888876665
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.35 E-value=5.4e+02 Score=27.48 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 002594 450 EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520 (903)
Q Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 520 (903)
+++.+.|..|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++-.+..++...+- -..-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455555555555555555555544433211 011122334444444333333333333333332211 0122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQLD 547 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (903)
.+.|...+...++.+|-..|..++...
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 334555555566666666666555443
No 463
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=34.89 E-value=7.6e+02 Score=28.79 Aligned_cols=156 Identities=19% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 002594 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSA 508 (903)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~ 508 (903)
|..|.++++.++...|.- ++..-|+.++|+..+++...-.+ ..-.....+.++...+ .-..-..+|+.
T Consensus 300 yk~a~KYLR~al~s~p~v---------lLl~~~~l~eal~~~e~~c~~~~-~~lpi~~~~~lle~~d~~~~~~l~~~~e~ 369 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV---------LLLIGGRLKEALNELEKFCISST-CALPIRLRAHLLEYFDQNNSSVLSSCLED 369 (547)
T ss_pred HHHHHHHHHHHhcCCCCe---------EEeccccHHHHHHHHHHhccCCC-ccchHHHHHHHHHHhCcccHHHHHHHHHH
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh-------
Q 002594 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYI------- 580 (903)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~------- 580 (903)
+++++|........+...+...-...+-++...--+.+. ....+|..++.++.+ .++++.-.+....++++
T Consensus 370 ~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf 448 (547)
T PF14929_consen 370 CLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDF 448 (547)
T ss_pred HhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccc
Q ss_pred --CCCCHHHHHHHHHHHHH
Q 002594 581 --DKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 581 --~p~~~~~~~~la~~~~~ 597 (903)
...+..+|..++....+
T Consensus 449 ~~~r~n~~aW~~l~~~l~~ 467 (547)
T PF14929_consen 449 AGWRKNIQAWKLLAKKLPK 467 (547)
T ss_pred cccccccHHHHHHHHHhhH
No 464
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.74 E-value=2.3e+02 Score=24.37 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=37.7
Q ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHH
Q 002594 91 DCDKALQLD-PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (903)
Q Consensus 91 ~~~~Al~l~-P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~l 143 (903)
.++++-..+ |--+-+|-.+|.+|...|+.+.|+..|+.--.+.|++..-...+
T Consensus 59 ~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 59 YLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 444444333 22344788899999999999999999998877777776555444
No 465
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.46 E-value=5.1e+02 Score=28.77 Aligned_cols=25 Identities=24% Similarity=0.132 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQ 545 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~ 545 (903)
..-|.+.+.+|+-++|.++++.+..
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3446666777777777777666543
No 466
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.05 E-value=86 Score=37.17 Aligned_cols=98 Identities=21% Similarity=0.162 Sum_probs=72.9
Q ss_pred ccchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCh-hHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCCChh
Q 002594 26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (903)
Q Consensus 26 ~~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~ 104 (903)
++.-+.+.+...+-+....-....++|.+++..-+=+....|.+ ..+..|+.||..+++.+-|+++..-....+|.++.
T Consensus 83 lp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 83 LPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred ccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 55555556566555566666778899999999888887777554 44677999999999999999998888899999988
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q 002594 105 AYILKGCAFSALGRKEEAL 123 (903)
Q Consensus 105 a~~~lG~~~~~lg~~~eA~ 123 (903)
+.......+..+..++-+.
T Consensus 163 ~~eif~elk~ll~~~d~~s 181 (748)
T KOG4151|consen 163 ASEIFEELKGLLELKDLAS 181 (748)
T ss_pred HHHHHHHHHHHHhhcCCcc
Confidence 7775555554443333333
No 467
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.60 E-value=5.7e+02 Score=29.95 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (903)
Q Consensus 587 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 643 (903)
.....+..+...+..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 44 AMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3444444455555555555555555555554 444445555555555555544444
No 468
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=31.96 E-value=15 Score=42.63 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCC-cHHH
Q 002594 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILK--EDP-MYPEALIGRGTARAFQRELEAAISDFTEA--IQSNPS-AGEA 451 (903)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~ 451 (903)
+.....++.-+..++..|++..|..++.++-. +.| ......+..|.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 44467778888999999999999999998762 233 24456677889999999999999998742 112111 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 452 WKRRGQARAALGESVEAIQDLSKALEF 478 (903)
Q Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~al~~ 478 (903)
+..++.++...|++-+|...+-.+-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 666788888889888887765554443
No 469
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.74 E-value=63 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHh
Q 002594 117 GRKEEALSVWEKGYE 131 (903)
Q Consensus 117 g~~~eA~~~~~~al~ 131 (903)
|++++|+..|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666777777766643
No 470
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=31.55 E-value=4.8e+02 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Q 002594 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (903)
Q Consensus 533 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (903)
.+.|...+.+++.++|....++..+..+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 456677777777777777777776666666666655
No 471
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.48 E-value=67 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhcc
Q 002594 54 KAIRILDSLLAQS 66 (903)
Q Consensus 54 ~Ai~~y~~ai~~~ 66 (903)
+|+....+|++.+
T Consensus 5 ~A~~l~~~Ave~d 17 (75)
T cd02677 5 QAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 472
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.35 E-value=6.7e+02 Score=26.72 Aligned_cols=212 Identities=10% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA 461 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~ 461 (903)
..-.......+-..-++.+++-....|+..++++..|...+..|+|..|-.++-....+ ++++..+....-..-.-
T Consensus 100 d~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL 179 (432)
T KOG2758|consen 100 DLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL 179 (432)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-------------HHHHHHHHHHHcCCHHHHHHHHH----HHHHhCCCCHHHHHHHH
Q 002594 462 LGESVEAIQDLSKALEFEPNSAD-------------ILHERGIVNFKFKDFNAAVEDLS----ACVKLDKENKSAYTYLG 524 (903)
Q Consensus 462 ~g~~~~A~~~~~~al~~~p~~~~-------------~~~~la~~~~~~g~~~~A~~~~~----~al~~~p~~~~~~~~la 524 (903)
..+++.|++.+.+.-+.-....- .+..+-..+-.-+--+.-++.|- -.-.+....|..+.+++
T Consensus 180 ~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLa 259 (432)
T KOG2758|consen 180 TQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLA 259 (432)
T ss_pred HhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHH
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002594 525 LALSSI-GEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (903)
Q Consensus 525 ~~~~~~-g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 597 (903)
.+..-. .+...+++-+-+.++...-. .+.....-.+++-.-+++.|...++++-+.-.++...-..++.....
T Consensus 260 tAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ 334 (432)
T KOG2758|consen 260 TAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLEN 334 (432)
T ss_pred HHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
No 473
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=31.28 E-value=16 Score=42.48 Aligned_cols=111 Identities=18% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Q 002594 402 SIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAI--QSNPS-AGEAWKRRGQARAALGESVEAIQDLSKA-- 475 (903)
Q Consensus 402 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a-- 475 (903)
.++.++-...+ .....++.-+.++...|++..|...+.+.- .+.+. ........+.+....|+++.|+..+...
T Consensus 10 ~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~ 89 (536)
T PF04348_consen 10 QYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDL 89 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc
Confidence 33344433333 234455666788899999999999988766 23333 3455667788888999999999988741
Q ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 476 LEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (903)
Q Consensus 476 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 512 (903)
..+.+. ....+..++.++...|++-+|...+-.+-.+
T Consensus 90 ~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 90 WQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp --------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 112111 2345666788888888888887766554433
No 474
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.25 E-value=2e+02 Score=25.21 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002594 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR 429 (903)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 429 (903)
....+..|...+..|++..|.+.+.++-+..+..+-.+..-|.+-..+|
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444556666666777777777777665554444444444455544444
No 475
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=30.75 E-value=1.3e+02 Score=29.56 Aligned_cols=39 Identities=18% Similarity=0.074 Sum_probs=18.9
Q ss_pred HHhccCChhHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 002594 62 LLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100 (903)
Q Consensus 62 ai~~~~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P 100 (903)
.+...|++..+.+.+.++..+|+.++|.....++..+-|
T Consensus 137 ~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 137 LLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333334444444445555555555555554455444444
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.43 E-value=2.6e+02 Score=21.69 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=30.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 002594 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC 681 (903)
Q Consensus 625 la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 681 (903)
.+..+...|+|-+|-+.++.+-...+++ ......+++..--+......|+..-|..
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455566677777777777766555444 3344444544444444455555555543
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.21 E-value=95 Score=25.50 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHH
Q 002594 429 RELEAAISDFTEAIQ 443 (903)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (903)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 478
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.05 E-value=1.1e+02 Score=24.81 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002594 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQ 65 (903)
Q Consensus 32 ~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~ 65 (903)
+-..+...-.+...+=+.|+|++|+.+|.++|+.
T Consensus 2 le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 2 LERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 479
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.93 E-value=67 Score=32.50 Aligned_cols=35 Identities=9% Similarity=-0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhccCcHH
Q 002594 620 ECLYLRASCYH---------AIGEYREAIKDYDAALDLELDSME 654 (903)
Q Consensus 620 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~l~p~~~~ 654 (903)
..+...|..+. ..++...|..++++|++++|+..-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 45556677663 456788999999999999998643
No 480
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=28.82 E-value=3.3e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 521 TYLGLALSSIGEYKKAEEAHLKAIQL 546 (903)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~ 546 (903)
..+|...++.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 481
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=28.60 E-value=4.8e+02 Score=27.34 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHccCCCCHHHHHHHHHHHHHcCCHH
Q 002594 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR 636 (903)
Q Consensus 602 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 636 (903)
+.|...+.+|++++|....++..+-.+-...|+.+
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 56777777888888877777777766666666653
No 482
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=28.26 E-value=1.5e+02 Score=18.94 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHc
Q 002594 88 VIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (903)
Q Consensus 88 Ai~~~~~Al~l~P~~~~a~~~lG~~~~~l 116 (903)
.+..+.++|..+|.+..++..+-.+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46678889999999999988887766544
No 483
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.13 E-value=7.8e+02 Score=26.49 Aligned_cols=102 Identities=11% Similarity=-0.006 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHH
Q 002594 434 AISDFTEAIQSNPSAGEAW---KRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAV 503 (903)
Q Consensus 434 A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~ 503 (903)
+...|+++.+.-|++..+. ..-|.++...++|.+....+.-+-.....+ +..-...|.....
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vN-------- 111 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIN-------- 111 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhc--------
Confidence 4556777777766654332 345677777777777666665443321111 0011111211111
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 504 EDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (903)
Q Consensus 504 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (903)
....+.+|.. .-..+++|.-|+..++++.|.-.|+++...
T Consensus 112 ---DNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 112 ---DNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred ---cchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 1111122222 234567788888888888888888887653
No 484
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=27.72 E-value=7.7e+02 Score=26.27 Aligned_cols=160 Identities=16% Similarity=0.076 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcccHHHHH
Q 002594 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI----QLDRNFLEAWG 555 (903)
Q Consensus 480 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~ 555 (903)
|-..+....+-..+ ..+++.+.++..++.+..+|--.+.++..+.++.++| ++.+.......+ ..-|.-....+
T Consensus 97 ~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F 174 (301)
T TIGR03362 97 PPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKF 174 (301)
T ss_pred CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhccc
Confidence 33455555554544 6678899999999999998888889999999999999 455555444433 33343211111
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHh-----------hCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHhHccCCCC-
Q 002594 556 HLTQFYQDLAN---SEKALECLQQVLY-----------IDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN- 618 (903)
Q Consensus 556 ~la~~~~~~g~---~~~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~- 618 (903)
..|- -++....+..... ..+ ........-+..+...+..++|+..++..+...+..
T Consensus 175 -------~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R 247 (301)
T TIGR03362 175 -------SDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPR 247 (301)
T ss_pred -------CCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChH
Confidence 0110 0111111111000 001 111222334677788999999999999876543332
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002594 619 --IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (903)
Q Consensus 619 --~~~~~~la~~~~~~g~~~~A~~~~~~al~l 648 (903)
....+.++.++...|.++-|...|+...+.
T Consensus 248 ~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 248 ERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566889999999999999999887764
No 485
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.18 E-value=3.1e+02 Score=32.00 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=32.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002594 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (903)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (903)
...+....+..|..+-.-+..+.|-.+|+..+..+|+ ..++..|.-+.+.|-...|...+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 38 EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3344445555555555555555555555555555555 444555555555555555555444
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.72 E-value=5.7e+02 Score=31.20 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=32.3
Q ss_pred HHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 80 SQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 80 ~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~a 129 (903)
+.-|+.+.|+..+.+. +....+.+||...+.+|+.+=|...|++.
T Consensus 654 Le~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4457777777665541 34567888888888888888888888776
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.62 E-value=6.4e+02 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHccCC--CCHHHHHHHHHHHHHc
Q 002594 601 HKKAIKDLSSGLGIDP--SNIECLYLRASCYHAI 632 (903)
Q Consensus 601 ~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~ 632 (903)
+++.++-+++.+-.-| ++++.|+..|.|+.-.
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 4555555555554433 4567777777776543
No 488
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.38 E-value=2.8e+02 Score=22.58 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=7.7
Q ss_pred hcCCHHHHHHHHHHHH
Q 002594 48 SLRNWSKAIRILDSLL 63 (903)
Q Consensus 48 ~~~~y~~Ai~~y~~ai 63 (903)
+.|+|++|+.+|.++|
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555444443
No 489
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.74 E-value=1.7e+02 Score=18.58 Aligned_cols=22 Identities=18% Similarity=-0.061 Sum_probs=9.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 002594 488 ERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 488 ~la~~~~~~g~~~~A~~~~~~a 509 (903)
.+...+.+.|+++.|...++..
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 490
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.66 E-value=1.1e+02 Score=24.09 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=8.2
Q ss_pred HHHHhhcHHHHHHHHHHHH
Q 002594 78 CYSQLELHKHVIRDCDKAL 96 (903)
Q Consensus 78 ~~~~lg~~~~Ai~~~~~Al 96 (903)
-+-+.|++++|+..|.+|+
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 3333444444444444443
No 491
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=8.7e+02 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002594 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (903)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 586 (903)
+.+-+..+..+.-.+++.++...+..+.-+.|+...
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~ 248 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSP 248 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhH
Confidence 444445555555666777777777777766665433
No 492
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.51 E-value=1.5e+02 Score=28.05 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=34.8
Q ss_pred hhhhhHhhhhchhhhhhHHhhccccchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002594 3 KRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64 (903)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~ 64 (903)
||++=|..+||+-+-.-+. .+.+..+....=..+.+++..+||+.|..+....+.
T Consensus 64 kr~~~D~~KRL~iLfd~ln-------~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t 118 (157)
T PF07304_consen 64 KRVVDDIEKRLNILFDHLN-------NGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMT 118 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444566666666655443 344554544333788999999999999998887654
No 493
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=24.13 E-value=1.3e+02 Score=24.36 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002594 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (903)
Q Consensus 396 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (903)
...+|+.++.++++.+.. |++++|+.+|..+++.
T Consensus 2 ~l~~Ai~lv~~Av~~D~~---------------g~y~eA~~lY~~ale~ 35 (75)
T cd02684 2 SLEKAIALVVQAVKKDQR---------------GDAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHH
No 494
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.35 E-value=1.8e+02 Score=22.81 Aligned_cols=25 Identities=12% Similarity=0.504 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQIL 408 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al 408 (903)
+...|..+-..|++++|+.+|.+++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555666666666665554
No 495
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.23 E-value=8.5e+02 Score=25.27 Aligned_cols=241 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred hhhhHHhhHHHHhhHHHHHHHhhccCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002594 352 WDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (903)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 431 (903)
...++..-+...-.....+..+.+....+...+..-+-.++.+-....|+..+...+......+.+....|.++-..| .
T Consensus 20 ~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~ 98 (289)
T KOG0567|consen 20 QNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D 98 (289)
T ss_pred HHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c
Q ss_pred HHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 432 EAAISDFTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (903)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 510 (903)
.+...++.+.. .+|.-...- ..+|.-+..-++--..+..-......+|.-+.....+..+ +..
T Consensus 99 ~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~l---------------r~~ 162 (289)
T KOG0567|consen 99 PESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHEL---------------RAE 162 (289)
T ss_pred hhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHH---------------HHH
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002594 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (903)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 590 (903)
-++++.+....+.+..+.+.-..++|+..+-..+..+ ..-.....|.++-+++... |+..+.+.+.....++...+.
T Consensus 163 lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s~~-ai~~L~k~L~d~~E~pMVRhE 239 (289)
T KOG0567|consen 163 LLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQSPA-AIPSLIKVLLDETEHPMVRHE 239 (289)
T ss_pred HHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccchh-hhHHHHHHHHhhhcchHHHHH
Q ss_pred HHHHHHHCCCHHHHHHHHHHhHc
Q 002594 591 RGLLLHGLGQHKKAIKDLSSGLG 613 (903)
Q Consensus 591 la~~~~~~g~~~eA~~~~~~al~ 613 (903)
-+.++...++ ++++..+++.+.
T Consensus 240 aAeALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 240 AAEALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred HHHHHHhhcC-HHHHHHHHHHcC
No 496
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=22.97 E-value=4.1e+02 Score=23.97 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 454 RRGQARAALGESVEAIQDLSKALEFEPN---------------SADILHERGIVNFKFKDFNAAVEDLSAC 509 (903)
Q Consensus 454 ~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 509 (903)
.+|....+.+++-.++-+|++|+.+..+ ......++|..+..+|+.+-.+++++-|
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 3444455555555555555555443211 1123455666666666666666666443
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.84 E-value=8.2e+02 Score=25.84 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=54.2
Q ss_pred ccchhhHhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---CChhHHhhHHHHHHHhhcHHHHHH-HHHHHHHhC--
Q 002594 26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIR-DCDKALQLD-- 99 (903)
Q Consensus 26 ~~~~~~~~~~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~~~~ra~~~~~lg~~~~Ai~-~~~~Al~l~-- 99 (903)
+.+.-..+.........+..++..|||..|+......-..- ........+ -.++.+...-+. ..+.++.--
T Consensus 117 ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~ 193 (291)
T PF10475_consen 117 LLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQ 193 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555566778899999999999988764433 222222221 122222222221 112222111
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002594 100 PTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (903)
Q Consensus 100 P~~~~a~~~lG~~~~~lg~~~eA~~~~~~a 129 (903)
-=++..|..+-.+|..+|+.+.+..-+...
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 123457888888888888888877544444
No 498
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.03 E-value=2.4e+02 Score=24.62 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Q 002594 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (903)
Q Consensus 74 ~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~ 118 (903)
..|..-+-.|++..|.+...++-+..+.-.-.|..-+++-..+||
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 356666677788888888888766655555566655666666654
No 499
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.64 E-value=4.6e+02 Score=24.50 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=22.6
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhccCChhHHh
Q 002594 43 LAKLCSLR-NWSKAIRILDSLLAQSYEIQDIC 73 (903)
Q Consensus 43 ~~~~~~~~-~y~~Ai~~y~~ai~~~~~~~~~~ 73 (903)
|-.++..| ++++|+.+|-+||..+++|..+.
T Consensus 97 GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 97 GEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 34466777 88888888888888887776643
No 500
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=21.61 E-value=1.5e+02 Score=24.31 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002594 106 YILKGCAFSALGRKEEALSVWEKGY 130 (903)
Q Consensus 106 ~~~lG~~~~~lg~~~eA~~~~~~al 130 (903)
++..|..+-..|+.++|+..|++++
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3344444555688899999999985
Done!