Query 002594
Match_columns 903
No_of_seqs 1232 out of 4807
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 15:47:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002594.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1314-1318//hhsearch_pdb/002594hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 321.7 49.2 376 44-663 7-383 (388)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 314.0 48.2 316 379-701 65-380 (388)
3 2xpi_A Anaphase-promoting comp 1.0 1 1 313.5 45.4 489 36-657 84-588 (597)
4 2gw1_A Mitochondrial precursor 1.0 1 1 309.6 45.4 455 39-659 9-489 (514)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 300.1 52.7 463 67-699 82-589 (597)
6 3fp2_A TPR repeat-containing p 1.0 1 1 296.0 43.4 444 35-656 24-499 (537)
7 2gw1_A Mitochondrial precursor 1.0 1 1 288.2 38.5 280 412-699 183-488 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 283.6 36.1 441 69-697 25-499 (537)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 270.1 42.7 323 369-698 14-367 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 262.2 42.1 216 384-655 146-365 (450)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=321.70 Aligned_cols=376 Identities=19% Similarity=0.191 Sum_probs=349.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 999951899999999999983237-9157856999999712689999999999980999745999999999986999999
Q 002594 44 AKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (903)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA 122 (903)
..++..|+|++|+..|.+++...| ++..+..++.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99987799999999999999849788999999999999868999999999999761978669999999999877999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 99999999521589486899997999999998200010000001468765545678788985303210379875223344
Q 002594 123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS 202 (903)
Q Consensus 123 ~~~~~~al~~~~~~~~~~~~~l~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (903)
+..|++++.+
T Consensus 87 ~~~~~~al~~---------------------------------------------------------------------- 96 (388)
T 1w3b_A 87 IEHYRHALRL---------------------------------------------------------------------- 96 (388)
T ss_dssp HHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHC----------------------------------------------------------------------
T ss_conf 9999999874----------------------------------------------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35012434105899988877877556799867655666445886411112588999998865444774211236888655
Q 002594 203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD 282 (903)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (903)
T Consensus 97 -------------------------------------------------------------------------------- 96 (388)
T 1w3b_A 97 -------------------------------------------------------------------------------- 96 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78998876675444566678855567788878454588887400001344578999880433232232146647854798
Q 002594 283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA 362 (903)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 362 (903)
T Consensus 97 -------------------------------------------------------------------------------- 96 (388)
T 1w3b_A 97 -------------------------------------------------------------------------------- 96 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 86299999983114886699999999999983998999999999999699999999999999998389999999999999
Q 002594 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (903)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (903)
.|..+..+..+|..+...|++++|+..|+++++.+|+...++..+|.++...|++++|+..|.+++
T Consensus 97 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 97 --------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf --------------965399999999999985899999999999997598968999999999998468999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 82999499999999999991998999999999998199989999999999998289999999999999718999999999
Q 002594 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (903)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 522 (903)
...|++..++..+|.++...|++++|+..|++++..+|.+...+..+|.++...|++++|+..+++++..+|++..++..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 72989789999999999985999999999999985598867999999999998578999999999998529687899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999982999999999999997180409999999999999299899999999999308897999999999999889999
Q 002594 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (903)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (903)
+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999986889999999999986499988999999999998699799999999998649444999999999999848999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999867139999999999999999919999999999999963458678889999999
Q 002594 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (903)
Q Consensus 603 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 663 (903)
+|+..++++++..|++..++..+|.++...|++++|+..|+++++++|++..++..++..+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999998609873999977999999868889999999999861999789998599999
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=314.00 Aligned_cols=316 Identities=22% Similarity=0.255 Sum_probs=303.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 66999999999999839989999999999996999999999999999983899999999999998299949999999999
Q 002594 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (903)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (903)
..+..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|.+++..+|+...++..+|.+
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 86699999999998779999999999999874965399999999999985899999999999997598968999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99919989999999999981999899999999999982899999999999997189999999999999998299999999
Q 002594 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (903)
Q Consensus 459 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 538 (903)
+...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99846899999999999872989789999999999985999999999999985598867999999999998578999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999971804099999999999992998999999999993088979999999999998899999999999867139999
Q 002594 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (903)
Q Consensus 539 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 618 (903)
.+++++...|++..++..+|.++...|++++|+..+++++...|..+.++..+|.++...|++++|+..++++++..|.+
T Consensus 225 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999852968789999999999986889999999999986499988999999999998699799999999998649444
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999999991999999999999996345867888999999999999999962177999987553116988599998
Q 002594 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (903)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~w~ 698 (903)
+.++..+|.++...|++++|+..+++++++.|++.. .++.++..+...+++++|+..|+++.+++|.+.+.|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999999848999999999999860987399-------9977999999868889999999999861999789998
Q ss_pred HHC
Q ss_conf 515
Q 002594 699 KRL 701 (903)
Q Consensus 699 ~r~ 701 (903)
...
T Consensus 378 ~lg 380 (388)
T 1w3b_A 378 NMG 380 (388)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 599
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=313.55 Aligned_cols=489 Identities=13% Similarity=0.033 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999951899999999999983237915785699999971268999999999998099974599999999998
Q 002594 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (903)
Q Consensus 36 ~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~ 115 (903)
.......+..++..|+|++|+..|.+++...|+...+..++.+|.+.|++++|+..+++++.. |.+..++..+|.+|..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
T ss_conf 999999999998745834799999999960899357999999999747699999999987335-4565089999999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH------HHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 69999999999999952158948689999799------999999820001000000146876554567878898530321
Q 002594 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELE------ELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETS 189 (903)
Q Consensus 116 lg~~~eA~~~~~~al~~~~~~~~~~~~~l~l~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (903)
.|++++|+..|++. .|..... .....+. +....+...+...+
T Consensus 163 ~g~~~~A~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------- 210 (597)
T 2xpi_A 163 LYDWQGALNLLGET---NPFRKDE-KNANKLLMQDGGIKLEASMCYLRGQVY---------------------------- 210 (597)
T ss_dssp TTCHHHHHHHHCSS---CTTC-----------CCCSSCCHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHCC---CCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHH----------------------------
T ss_conf 86699999998424---8863223-234334321123512589999988999----------------------------
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03798752233443501243410589998887787755679986765566644588641111258899999886544477
Q 002594 190 ENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRD 269 (903)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (903)
...+..........+... ..+............
T Consensus 211 ---------~~~g~~~~A~~~~~~~~~----------~~p~~~~~~~~l~~~---------------------------- 243 (597)
T 2xpi_A 211 ---------TNLSNFDRAKECYKEALM----------VDAKCYEAFDQLVSN---------------------------- 243 (597)
T ss_dssp ---------HHTTCHHHHHHHHHHHHH----------HCTTCHHHHHHHHHT----------------------------
T ss_pred ---------HHCCCHHHHHHHHHHHHH----------HCCHHHHHHHHHHHH----------------------------
T ss_conf ---------983998999999999997----------293256999999985----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--CCCCHHHHHH
Q ss_conf 42112368886557899887667544456667885556778887845458888740000-13445789--9988043323
Q 002594 270 ASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY-SKSSISDN--KSSDSTESRS 346 (903)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~ 346 (903)
.. ........ ..... ........ .....+..+.
T Consensus 244 ---------------~~-~~~~~~~~----------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 244 ---------------HL-LTADEEWD----------------------------LVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp ---------------TC-SCHHHHHH----------------------------HHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred ---------------HC-CCCHHHHH----------------------------HHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf ---------------03-46156789----------------------------99865774234430889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22321466478547988629999998311488669999999999998399899999999999969999999999999999
Q 002594 347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (903)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 426 (903)
..+...+.+..+ ...+..+... |.+...+..+|..+...|++++|+..|+++++.+|.+..++..++.++.
T Consensus 280 ~~~~~~g~~~~A--------~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 280 NKTSHEDELRRA--------EDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp CTTTTHHHHHHH--------HHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHCCCCHHHHH--------HHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 998073139999--------9999876438-8309999999999998468999999999999729553799999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 83899999999999998299949999999999999199899999999999819998999999999999828999999999
Q 002594 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (903)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 506 (903)
..|++++|+..+.+++...|.+..++..+|.++...|++++|+..|+++++..|.+...+..++.++...|++++|+..+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 82777799999999985183547999999999998356999999999998729777899999999999757779999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Q ss_conf 99997189999999999999998299999999999999718040999999999999929989999999999930------
Q 002594 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------ 580 (903)
Q Consensus 507 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 580 (903)
++++...|.+..++..++.++...|++++|+..|+++++..|.++.++..++.++...|++++|+..|++++..
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99998681343899999999998579999999999999848887679999999999818999999999999985323454
Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8897-9999999999998899999999999867139999999999999999919999999999999963458678889
Q 002594 581 DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 581 ~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
.|.. ..++..+|.++...|++++|+..++++++..|+++.++..+|.+|...|++++|...|+++++++|++...+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 535499999999999998047999999999999738997389999999999817899999999999720888748999
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=309.56 Aligned_cols=455 Identities=18% Similarity=0.185 Sum_probs=366.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999951899999999999983237915785699999971268999999999998099974599999999998699
Q 002594 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (903)
Q Consensus 39 ~r~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~ 118 (903)
....+..++..|+|++|+..|++++..+|++..+.++|.+++.+|++++|+..++++++++|++..+++.+|.++..+|+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987899986027899999999985592278998688999988549999999987760693789999988899998766
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999999952158948689999799999999820001000000146876554567878898530321037987522
Q 002594 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (903)
Q Consensus 119 ~~eA~~~~~~al~~~~~~~~~~~~~l~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (903)
+++|+..|++++...|.........+...................+
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------- 134 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID---------------------------------- 134 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_conf 8889999999995598751137899999999999999999999899----------------------------------
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33443501243410589998887787755679986765566644588641111258899999886544477421123688
Q 002594 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (903)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (903)
.....+.... ..+. . +.
T Consensus 135 --------------~~~~~~~~~~----~~~~-------~-~~------------------------------------- 151 (514)
T 2gw1_A 135 --------------TATATPTELS----TQPA-------K-ER------------------------------------- 151 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------HHHHHHHHCC----CCHH-------H-HH-------------------------------------
T ss_conf --------------9987665126----7724-------6-78-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86557899887667544456667885556778887845458888740000134457899988043323223214664785
Q 002594 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (903)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (903)
.. .......... .....+.+...
T Consensus 152 ------~~-----------------------------------------------~~~~~~~~~~----~~~~~~~~~~~ 174 (514)
T 2gw1_A 152 ------KD-----------------------------------------------KQENLPSVTS----MASFFGIFKPE 174 (514)
T ss_dssp ----------------------------------------------------------CCCCHHH----HHHHHTTSCCC
T ss_pred ------HH-----------------------------------------------HCCCCCHHHH----HHHHHHHCCHH
T ss_conf ------86-----------------------------------------------3447861589----99998625878
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHHH
Q ss_conf 47988629999998311488669999999999998---3998999999999999-----6--9-------9999999999
Q 002594 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEALIGR 421 (903)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~l 421 (903)
.. ...-..|.+...++..|..++. .|++++|+..|++++. . . |..+.++..+
T Consensus 175 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 175 LT-----------FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp CC-----------CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 88-----------8872599588899998999987623322999999999999886654223810011482789999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999838999999999999982999499999999999991998999999999998199989999999999998289999
Q 002594 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (903)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 501 (903)
|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 99999878999999999999863864-89999999999988889999999999861386778999999999998077999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999971899999999999999982999999999999997180409999999999999299899999999999308
Q 002594 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (903)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (903)
|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999873850289999999999986899999999999998754677899999999987889999999999999761
Q ss_pred CCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89799------99999999998---8999999999998671399999999999999999199999999999999634586
Q 002594 582 KRFSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (903)
Q Consensus 582 p~~~~------~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~ 652 (903)
|.... ++..+|.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|...|++++++.|++
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 23321789999999999998663325888999999999987585558999999999998257999999999998766146
Q ss_pred HHHHHHH
Q ss_conf 7888999
Q 002594 653 MEKFVLQ 659 (903)
Q Consensus 653 ~~~~~~~ 659 (903)
...+...
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 8899999
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=300.11 Aligned_cols=463 Identities=12% Similarity=-0.008 Sum_probs=363.4
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 79157856999999712689999999999980999745999999999986999999999999995215894868999979
Q 002594 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (903)
Q Consensus 67 ~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~~l~l 146 (903)
++...+...+..+.+.|++++|+..+++++...|+. ..++.+|.++...|++++|+..|++++.. +..+.....+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 899999999999987458347999999999608993-57999999999747699999999987335-4565089999999
Q ss_pred HHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999998200010000001468765545678788985303210379875223344350124341058999888778775
Q 002594 147 EELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSD 226 (903)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (903)
.-... .......+..+..
T Consensus 160 ~~~~g---------------------------------------------------~~~~A~~~~~~~~----------- 177 (597)
T 2xpi_A 160 LVKLY---------------------------------------------------DWQGALNLLGETN----------- 177 (597)
T ss_dssp HHHTT---------------------------------------------------CHHHHHHHHCSSC-----------
T ss_pred HHHHH---------------------------------------------------HHHHHHHHHHCCC-----------
T ss_conf 99886---------------------------------------------------6999999984248-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56799867655666445886411112588999998865444774211236888655789988766754445666788555
Q 002594 227 EAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHD 306 (903)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (903)
+..... . +. ..
T Consensus 178 --~~~~~~---~-~~-------------------------------------------~~-------------------- 188 (597)
T 2xpi_A 178 --PFRKDE---K-NA-------------------------------------------NK-------------------- 188 (597)
T ss_dssp --TTC---------------------------------------------------------------------------
T ss_pred --CCCCCC---C-CC-------------------------------------------CC--------------------
T ss_conf --863223---2-34-------------------------------------------33--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 67788878454588887400001344578999880433232232146647854798862999999831148866999999
Q 002594 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLS 386 (903)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (903)
..... . ........+..+...+...+....+.. .+.++....|.....+..
T Consensus 189 -~~~~~-------~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 189 -LLMQD-------G-------------GIKLEASMCYLRGQVYTNLSNFDRAKE--------CYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp ---CCC-------S-------------SCCHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHCTTCHHHHHH
T ss_pred -CCCCC-------C-------------CCCHHHHHHHHHHHHHHHCCCHHHHHH--------HHHHHHHHCCHHHHHHHH
T ss_conf -43211-------2-------------351258999998899998399899999--------999999729325699999
Q ss_pred H--------------------------------------HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 9--------------------------------------99999839989999999999996999999999999999983
Q 002594 387 R--------------------------------------GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428 (903)
Q Consensus 387 ~--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 428 (903)
+ +..+...|++++|+..|+++++. |.+..++..+|.++...
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf 99850346156789998657742344308899999999999980731399999999876438-83099999999999984
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89999999999999829994999999999999919989999999999981999899999999999982899999999999
Q 002594 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (903)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 508 (903)
|++++|+..|++++...|.+..++..++.++...|++++|+..+++++...|.+..++..+|.+|...|++++|+..|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 68999999999999729553799999999999827777999999999851835479999999999983569999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99718999999999999999829999999999999971804099999999999992998999999999993088979999
Q 002594 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (903)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 588 (903)
+++..|.+..++..++.++...|++++|+..|++++...|.+..++..++.++...|++++|+..|++++...|.++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98729777899999999999757779999999999986813438999999999985799999999999998488876799
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999889999999999986713------9999-9999999999999199999999999999634586788899999
Q 002594 589 HLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (903)
Q Consensus 589 ~~la~~~~~~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 661 (903)
..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|...|++++++.|++..
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------- 551 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN------- 551 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH-------
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-------
T ss_conf 9999999981899999999999998532345453549999999999999804799999999999973899738-------
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999621779999875531169885999985
Q 002594 662 AFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (903)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~w~~ 699 (903)
.++.++..+...+++++|...|+++++++|.....|..
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999998178999999999997208887489999
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=296.01 Aligned_cols=444 Identities=16% Similarity=0.139 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98999999999995189999999999998323-79157856999999712689999999999980999745999999999
Q 002594 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (903)
Q Consensus 35 ~~~~~r~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~ 113 (903)
.+......+..++..|+|++|+.+|++++..+ .++..+.++|.||..+|++++|+..++++++++|++..+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89999999999998642999999999998638998489999999999868999999999999860986289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 98699999999999999521589486899997999999998200010000001468765545678788985303210379
Q 002594 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193 (903)
Q Consensus 114 ~~lg~~~eA~~~~~~al~~~~~~~~~~~~~l~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (903)
..+|++++|+..|+ ++.+.|..................+...+ .....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~l~-------------------------- 151 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NENLS-------------------------- 151 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHHCC--------------------------
T ss_pred HHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHH--------------------------
T ss_conf 98389999999999-98648787858899999877898899999-----99997--------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87522334435012434105899988877877556799867655666445886411112588999998865444774211
Q 002594 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273 (903)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (903)
..+.... ...+....+..+.
T Consensus 152 ----------------------~~~~~~~---~~~~~~~~~~~~~----------------------------------- 171 (537)
T 3fp2_A 152 ----------------------KDEGRGS---QVLPSNTSLASFF----------------------------------- 171 (537)
T ss_dssp --------------------------------CCCCCHHHHHHHH-----------------------------------
T ss_pred ----------------------HCCCCCC---CCCCHHHHHHHHH-----------------------------------
T ss_conf ----------------------4745454---3450675799999-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23688865578998876675444566678855567788878454588887400001344578999880433232232146
Q 002594 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD 353 (903)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (903)
+
T Consensus 172 -------------------------------------------------------------------------------~ 172 (537)
T 3fp2_A 172 -------------------------------------------------------------------------------G 172 (537)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HH
Q ss_conf 647854798862999999831148866999999--------999999839989999999999996999999-------99
Q 002594 354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLS--------RGIAQVNEGKYASAISIFDQILKEDPMYPE-------AL 418 (903)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~ 418 (903)
.+.... ....+.......+........ .+......+++++|+..|+++++.+|++.. ++
T Consensus 173 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 173 IFDSHL------EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp TSCHHH------HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred HCCHHH------HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 447499------99987632564617899999998788764020688887999999999999987877404459999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999838999999999999982999499999999999991998999999999998199989999999999998289
Q 002594 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (903)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 498 (903)
..+|.++...|++++|+..+.+++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999987545578999999999866987-46999999999980379999999999754599987999999999986689
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999971899999999999999982999999999999997180409999999999999299899999999999
Q 002594 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (903)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (903)
+++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999985999779999999999984779999999999987399985999999999988378899999999998
Q ss_pred HHCCCCH------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 3088979------9999999999988----------99999999999867139999999999999999919999999999
Q 002594 579 YIDKRFS------KAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642 (903)
Q Consensus 579 ~~~p~~~------~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 642 (903)
...|... ..+..+|.++... |++++|+..++++++.+|++..++..+|.++...|++++|...|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 70976244688899999889999997640100224757999999999999749997899999999999851499999999
Q ss_pred HHHHHHCCCCHHHH
Q ss_conf 99996345867888
Q 002594 643 DAALDLELDSMEKF 656 (903)
Q Consensus 643 ~~al~l~p~~~~~~ 656 (903)
++++++.|+..+..
T Consensus 486 ~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 486 EDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHC--CHHHH
T ss_pred HHHHHHCCCCHHHH
T ss_conf 99998689938888
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=288.24 Aligned_cols=280 Identities=16% Similarity=0.137 Sum_probs=260.9
Q ss_pred CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999998---3899999999999998-----2--9-------99499999999999991998999999999
Q 002594 412 PMYPEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSK 474 (903)
Q Consensus 412 p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (903)
|.+..++..+|.+++. .|++++|+..+.+++. . . |....++..+|.++...|++++|+..+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 95888999989999876233229999999999998866542238100114827899999999999987899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99819998999999999999828999999999999971899999999999999982999999999999997180409999
Q 002594 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554 (903)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 554 (903)
++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 9863864-899999999999888899999999998613867789999999999980779999999999987385028999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH------HHHHHHHH
Q ss_conf 999999999299899999999999308897999999999999889999999999986713999999------99999999
Q 002594 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASC 628 (903)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~la~~ 628 (903)
..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999868999999999999987546778999999999878899999999999997612332178999999999999
Q ss_pred HHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999---19999999999999963458678889999999999999999621779999875531169885999985
Q 002594 629 YHA---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (903)
Q Consensus 629 ~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~w~~ 699 (903)
+.. .|++++|...+++++...|++.. +++.+|..+...+++++|+..|.++++++|+..+.|..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQ-------AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 86633258889999999999875855589-------99999999998257999999999998766146889999
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=283.55 Aligned_cols=441 Identities=14% Similarity=0.066 Sum_probs=340.7
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 15785699999971268999999999998099974599999999998699999999999999521589486899997999
Q 002594 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE 148 (903)
Q Consensus 69 ~~~~~~ra~~~~~lg~~~~Ai~~~~~Al~l~P~~~~a~~~lG~~~~~lg~~~eA~~~~~~al~~~~~~~~~~~~~l~l~~ 148 (903)
...+..+|.++++.|++++|+..+++++..+|++..+++.+|.++..+|++++|+..|++++++.|..+..+..+..+.-
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999986429999999999986389984899999999998689999999999998609862899999999999
Q ss_pred HHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999820001000000146876554567878898530321037987522334435012434105899988877877556
Q 002594 149 LLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEA 228 (903)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (903)
........+ ........++...
T Consensus 105 ~~g~~~~A~---------------------------------------------------~~~~~~~~~~~~~------- 126 (537)
T 3fp2_A 105 SLGNFTDAM---------------------------------------------------FDLSVLSLNGDFD------- 126 (537)
T ss_dssp HHTCHHHHH---------------------------------------------------HHHHHHC-------------
T ss_pred HCCCHHHHH---------------------------------------------------HHHHHHHCCCCCC-------
T ss_conf 838999999---------------------------------------------------9999986487878-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79986765566644588641111258899999886544477421123688865578998876675444566678855567
Q 002594 229 KGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVH 308 (903)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (903)
T Consensus 127 -------------------------------------------------------------------------------- 126 (537)
T 3fp2_A 127 -------------------------------------------------------------------------------- 126 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHH
Q ss_conf 78887845458888740000134457899988043323223214664785479886299999983114886699---999
Q 002594 309 DKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD---FRL 385 (903)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 385 (903)
. .... ....... .......+...+...|.... ...
T Consensus 127 ---------------------~------~~~~-------~~~~~~~--------~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 127 ---------------------G------ASIE-------PMLERNL--------NKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp ---------------------------------------CHHHHHH--------HHHHHHHHHHHCC-------CCCCCH
T ss_pred ---------------------H------HHHH-------HHHHHHH--------HHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf ---------------------5------8899-------9998778--------98899999999974745454345067
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCCCHH-------
Q ss_conf 9999999839989999999999996999999999999999--------9838999999999999982999499-------
Q 002594 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR--------AFQRELEAAISDFTEAIQSNPSAGE------- 450 (903)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~------- 450 (903)
.....++...+...++..+.+....++........++..+ ...+++++|+..+++++...|++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 57999997447499999876325646178999999987887640206888879999999999999878774044599999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999199899999999999819998999999999999828999999999999971899999999999999982
Q 002594 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (903)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 530 (903)
++..+|.++...|++++|+..+++++...|. ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999987545578999999999866987-469999999999803799999999997545999879999999999866
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999718040999999999999929989999999999930889799999999999988999999999998
Q 002594 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (903)
Q Consensus 531 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 610 (903)
|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 89999999999999859997799999999999847799999999999873999859999999999883788999999999
Q ss_pred HHCCCCCCH------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 671399999------9999999999991----------999999999999996345867888999999999999999962
Q 002594 611 GLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674 (903)
Q Consensus 611 al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 674 (903)
++...|.+. ..+..+|.++... |++++|+..|+++++..|++.. +++.+|..+...+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~g 476 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ-------AKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHC
T ss_conf 987097624468889999988999999764010022475799999999999974999789-------9999999999851
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 17799998755311698859999
Q 002594 675 KINSEFCWFDIDGDIDPLFKEYW 697 (903)
Q Consensus 675 ~~~~A~~~~~~a~~~~p~~~~~w 697 (903)
++++|+..|++++.++|...+..
T Consensus 477 ~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 477 KIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 49999999999998689938888
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=270.05 Aligned_cols=323 Identities=20% Similarity=0.194 Sum_probs=238.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99983114886699999999999983998999999999999699999999999999998389999999999999829994
Q 002594 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (903)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (903)
.+..++...|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|.++++..|.+
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 64235665378999999999999987999999999999998497168999999999998799799999999998449874
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999999991998999999999998199989---999999------------999998289999999999999718
Q 002594 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHER------------GIVNFKFKDFNAAVEDLSACVKLD 513 (903)
Q Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 513 (903)
..++..+|.++...|++++|+..|++++...|.+. ..+..+ |.++...|++++|+..+++++...
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 89999999999986999999999999972499970168899999999999999999999998689999999999999868
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH--
Q ss_conf 999999999999999829999999999999971804099999999999992998999999999993088979999999--
Q 002594 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR-- 591 (903)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 591 (903)
|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+....+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 253 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89769999999999877999999999999998688987999999999997599999999999998759980899999999
Q ss_pred ----------HHHHHHCCCHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ----------9999988999999999998671399999----99999999999919999999999999963458678889
Q 002594 592 ----------GLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (903)
Q Consensus 592 ----------a~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 657 (903)
|.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++.+.|++..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~--- 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN--- 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---
T ss_conf 99999999999999871799999999999985087336899999999999999878899999999999884845489---
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99999999999999962177999987553116988599998
Q 002594 658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (903)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~w~ 698 (903)
+++.+|.++...+++++|+..|+++++++|+....|.
T Consensus 331 ----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 331 ----ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred ----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf ----9999999998703799999999999885935299999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=262.16 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=107.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999983998999999999999699999999999999998389999999999999829994999999999999919
Q 002594 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (903)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (903)
++..|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..|.+++...|.+..++..+|.++...|
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999986899999999999998688976999999999987799999999999999868898799999999999759
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 98999999999998199989999999999998289999999999999718999999999999999829999999999999
Q 002594 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (903)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (903)
++++|+..+++++...|++...+..++.+.. ......+
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~~~~~~-------------------- 263 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------LNKLIES-------------------- 263 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HHHHHHH--------------------
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HHHHHHH--------------------
T ss_conf 9999999999998759980899999999999----------------------9999999--------------------
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 971804099999999999992998999999999993088979----9999999999988999999999998671399999
Q 002594 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (903)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 619 (903)
|.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++...|+++
T Consensus 264 --------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 264 --------------AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp --------------HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred --------------HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf --------------999987179999999999998508733689999999999999987889999999999988484548
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999999199999999999999634586788
Q 002594 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (903)
Q Consensus 620 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 655 (903)
.++..+|.++...|++++|...|++++++.|++...
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999987037999999999998859352999
Done!