BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002595
(903 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 756 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN-SSFLFNLNDQ 814
V + RS + G G F K ++ E + EY G +I + DKR K YD + ++F ++D
Sbjct: 54 VGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDS 113
Query: 815 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 870
V+DA G+ +F NHS +PNCY++VI + G + IFA +I GEEL YDY++
Sbjct: 114 EVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKF 169
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 681 GCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDN 740
GC C NR ++C CPC ++ C+ + R+ W+ C
Sbjct: 37 GCVDDCLNRM-----IFAECSPNTCPC--GEQCCNQRIQRHEWVQC-------------- 75
Query: 741 YECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRG-KI 799
+ R++ GWG K + +++ EY GE++S +E R +
Sbjct: 76 ---------------LERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQ 120
Query: 800 YDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERIS 859
Y + + NL+ V+D+YR G++ +F NHS DPNC + V G +R+G++A + +
Sbjct: 121 YHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMP 180
Query: 860 AGEELFYDYRY 870
AG EL YDY +
Sbjct: 181 AGTELTYDYNF 191
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 11/122 (9%)
Query: 757 LLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN---D 813
+ S+ GWG + + ++ EY GE+I+ EA++RG+ YD + ++LF+L+ D
Sbjct: 144 IFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESD 203
Query: 814 QFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDH------RVGIFAKERISAGEELFYD 867
+F +DA R G+ F NHS DPN +V V D+ R+ +F+ I+AGEEL +D
Sbjct: 204 EFTVDAARYGNVSHFVNHSCDPN--LQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFD 261
Query: 868 YR 869
Y+
Sbjct: 262 YQ 263
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
C+N V + R+ GWG K + K E++ EY GELI E R +
Sbjct: 81 CQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQE 140
Query: 803 ENSS--FLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISA 860
+ + ++ L+ ++DA KG+ +F NH PNC + V GD RVG+FA I A
Sbjct: 141 HDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKA 200
Query: 861 GEELFYDYRYE 871
G EL ++Y E
Sbjct: 201 GTELTFNYNLE 211
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 761 SDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS--SFLFNLNDQFVLD 818
++ GWG + + ++ EY GE++ H+E R K Y R + + L + ++D
Sbjct: 124 TEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIID 183
Query: 819 AYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE 871
A +KG+ +F NHS +PNC + V G RVG F + + +G EL +DY+++
Sbjct: 184 ATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ 236
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
C+N R+ L R+ GWG ++ + ++ EY GELIS EAD R
Sbjct: 115 CKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV------R 168
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E+ S+LF+L+++ + +DA G+ +F NH DPN +V M+ D R+ F+
Sbjct: 169 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 228
Query: 855 KERISAGEELFYDY 868
I GEEL +DY
Sbjct: 229 SRDIRTGEELGFDY 242
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
C+N R+ L R+ GWG ++ + ++ EY GELIS EAD R
Sbjct: 117 CKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGELISDAEADV------R 170
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E+ S+LF+L+++ + +DA G+ +F NH DPN +V M+ D R+ F+
Sbjct: 171 EDDSYLFDLDNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFS 230
Query: 855 KERISAGEELFYDY 868
I GEEL +DY
Sbjct: 231 SRDIRTGEELGFDY 244
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 134 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 187
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E S+LF+L+++ + +DA G+ +F NH +PN +V M D R+ F+
Sbjct: 188 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 247
Query: 855 KERISAGEELFYDY 868
I AGE+L +DY
Sbjct: 248 TRLIEAGEQLGFDY 261
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 136 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 189
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E S+LF+L+++ + +DA G+ +F NH +PN +V M D R+ F+
Sbjct: 190 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 249
Query: 855 KERISAGEELFYDY 868
I AGE+L +DY
Sbjct: 250 TRLIEAGEQLGFDY 263
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 110 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 163
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E S+LF+L+++ + +DA G+ +F NH +PN +V M D R+ F+
Sbjct: 164 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 223
Query: 855 KERISAGEELFYDY 868
I AGE+L +DY
Sbjct: 224 TRLIEAGEQLGFDY 237
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 743 CRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDR 802
CRN R+ L R+ GWG + ++ EY GELIS EAD R
Sbjct: 135 CRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADV------R 188
Query: 803 ENSSFLFNLNDQ----FVLDAYRKGDKLKFANHSPDPNCY-AKVIMVAGD---HRVGIFA 854
E S+LF+L+++ + +DA G+ +F NH +PN +V M D R+ F+
Sbjct: 189 EEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFS 248
Query: 855 KERISAGEELFYD 867
I AGE+L +D
Sbjct: 249 TRLIEAGEQLGFD 261
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 742 ECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYD 801
EC N + + ++ GWG ++ Y GE+I+ EA KR K YD
Sbjct: 125 ECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYD 184
Query: 802 RENSSFLFNLN-----DQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDH------RV 850
+ ++LF+L+ ++ +DA GD +F NHS PN + +H +
Sbjct: 185 DDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPN--IAIYSAVRNHGFRTIYDL 242
Query: 851 GIFAKERISAGEELFYDYRYEPDRAPA 877
FA + I EEL +DY D +P
Sbjct: 243 AFFAIKDIQPLEELTFDYAGAKDFSPV 269
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 762 DVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-----FLFNLNDQFV 816
D G G + +++ EY G+LI +A KR +Y ++ S+ + L+ +
Sbjct: 37 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 96
Query: 817 LDAYRKGDKL-KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRA 875
+DA R+ ++L + NHS NC K+ + G + + A I+AGEEL YDY DR+
Sbjct: 97 VDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY---GDRS 153
Query: 876 PA 877
A
Sbjct: 154 KA 155
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 762 DVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-----FLFNLNDQFV 816
D G G + +++ EY G+LI +A KR +Y ++ S+ + L+ +
Sbjct: 39 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 98
Query: 817 LDAYRKGDKL-KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRA 875
+DA R+ ++L + NHS NC K+ + G + + A I+AGEEL YDY DR+
Sbjct: 99 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY---GDRS 155
Query: 876 PA 877
A
Sbjct: 156 KA 157
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 762 DVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-----FLFNLNDQFV 816
D G G + +++ EY G+LI +A KR +Y ++ S+ + L+ +
Sbjct: 33 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 92
Query: 817 LDAYRKGDKL-KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDY 868
+DA R+ ++L + NHS NC K+ + G + + A I+AGEEL YDY
Sbjct: 93 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 690 FRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPD-----QKGDNYECR 744
F GC C K+ C C C D + C S G + V + + D+ CR
Sbjct: 59 FPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDH--CR 116
Query: 745 NMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN 804
N + ++ GWG + K ++ EY GE++ E +R + + +
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSD 176
Query: 805 SSFLFNLNDQF--------VLDAYRKGDKLKFANHSPDPNCYAKVIMV-AGDHRVGIFAK 855
S+++ + + +D G+ +F NHS +PN + + + ++ +FA
Sbjct: 177 SNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAA 236
Query: 856 ERISAGEELFYDY 868
+ I EEL YDY
Sbjct: 237 KDIVPEEELSYDY 249
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 742 ECRNMXXXXXXXXRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR--GKI 799
+C N + + R+ GWG ++ + +++ Y GE+I+ EAD+R
Sbjct: 121 DCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAEST 180
Query: 800 YDRENSSFLFNLN---DQFVLDAYRKGDKL-----------KFANHSPDPNCYAKVIMVA 845
R +LF L+ D LD G L +F NHS DPN +
Sbjct: 181 IARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPN--MAIFARV 238
Query: 846 GDHR------VGIFAKERISAGEELFYDY 868
GDH + +FA + I G EL +DY
Sbjct: 239 GDHADKHIHDLALFAIKDIPKGTELTFDY 267
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 762 DVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-----FLFNLNDQFV 816
D G G + +++ E+ G+LI +A KR +Y ++ S+ + L+ +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 97
Query: 817 LDAYRKGDKL-KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRA 875
+DA R+ ++L + NHS NC K+ + G + + A I+AGEEL YDY DR+
Sbjct: 98 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY---GDRS 154
Query: 876 PA 877
A
Sbjct: 155 KA 156
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 762 DVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSS-----FLFNLNDQFV 816
D G G + +++ EY G+LI +A KR +Y ++ S+ + L+ +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 97
Query: 817 LDAYRKGDKL-KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRA 875
+DA R+ ++L + NHS NC K+ + G + + A I+AGEEL +DY DR+
Sbjct: 98 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY---GDRS 154
Query: 876 PA 877
A
Sbjct: 155 KA 156
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 105 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 160
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 161 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 217
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 218 DEELTVAYGYDHSPPGKSGPEAPEW 242
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 107 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 162
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 163 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 219
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 220 DEELTVAYGYDHSPPGKSGPEAPEW 244
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 113 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 168
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 169 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 225
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 226 DEELTVAYGYDHSPPGKSGPEAPEW 250
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 108 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 163
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 164 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 220
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 221 DEELTVAYGYDHSPPGKSGPEAPEW 245
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 110 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 165
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 166 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 222
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 223 DEELTVAYGYDHSPPGKSGPEAPEW 247
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 110 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 165
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 166 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIFDMFV---HPRFGPIKCIRTLRAVEA 222
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 223 DEELTVAYGYDHSPPGKSGPEAPEW 247
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 755 RVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQ 814
RV++ +S + G+G F + S K E + E L R D G + +LF+ +
Sbjct: 5 RVIVKKSPLGGYGVFARKSFEKGELVEEC---LCIVRHNDDWGTALE----DYLFSRKN- 56
Query: 815 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDY 868
+ A G F NHS DPN A+ + AG R+ IF + I+ GEE+ Y
Sbjct: 57 --MSAMALGFGAIF-NHSKDPN--ARHELTAGLKRMRIFTIKPIAIGEEITISY 105
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 146 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 201
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 202 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 258
Query: 861 GEELFYDYRYE---PDR----APAWAR 880
EEL Y Y+ P + AP W +
Sbjct: 259 DEELTVAYGYDHSPPGKSGPEAPEWYQ 285
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 23/136 (16%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 164 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 219
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 220 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 276
Query: 861 GEELFYDYRYEPDRAP 876
EEL Y Y D +P
Sbjct: 277 DEELTVAYGY--DHSP 290
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + Y G I+H+E D R D + +L+
Sbjct: 158 RVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLD 213
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNC 837
++ V+D + + K+ ANHS PNC
Sbjct: 214 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 246
>pdb|1MUF|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79
Length = 257
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + Y G I+H+E D R D + +L+
Sbjct: 135 RVYVAESLISSAGEGLFSKVAVGPNTVXSFYNGVRITHQEVDSR----DWALNGNTLSLD 190
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNC 837
++ V+D + + K+ ANHS PNC
Sbjct: 191 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNC 223
>pdb|1N6A|A Chain A, Structure Of Set7/9
Length = 259
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + Y G I+H+E D R D + +L+
Sbjct: 108 RVYVAESLISSAGEGLFSKVAVGPNTVXSFYNGVRITHQEVDSR----DWALNGNTLSLD 163
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + R G I + A
Sbjct: 164 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDXFV---HPRFGPIKCIRTLRAVEA 220
Query: 861 GEELF--YDYRYEP-----DRAPAW 878
EEL Y Y + P AP W
Sbjct: 221 DEELTVAYGYDHSPPGKSGPEAPEW 245
>pdb|3M57|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M58|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M59|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
pdb|3M5A|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me3 Peptide And
Adohcy
Length = 261
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 755 RVLLGRSDVS--GWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLN 812
RV + S +S G G F K +VG + + G I+H+E D R D + +L+
Sbjct: 110 RVYVAESLISSAGEGLFSKVAVGPNTVMSFANGVRITHQEVDSR----DWALNGNTLSLD 165
Query: 813 DQFVLDAYRKGDKL-KF-------ANHSPDPNCYAKVIMVAGDHRVG----IFAKERISA 860
++ V+D + + K+ ANHS PNC + + R G I + A
Sbjct: 166 EETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEA 222
Query: 861 GEELFYDYRYE---PDR----APAW 878
EEL Y Y+ P + AP W
Sbjct: 223 DEELTVAYGYDHSPPGKSGPEAPEW 247
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 394 PSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSR 453
P ++++V + + + +R+ E+A Q ++KK+A+ D +V +SR
Sbjct: 151 PGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVL------------ESSR 198
Query: 454 KENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDS 513
E A +T KK ++ S L+ +S ++++NP
Sbjct: 199 MWREIAE-------------ETAKKYPDVELSHMLVD-----STSMQLIANPGQF----- 235
Query: 514 LRKDEFVAENMCKQELSDEKSWKTIEKGLF 543
D V ENM LSDE S T G+
Sbjct: 236 ---DVIVTENMFGDILSDEASVITGSLGML 262
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 38/150 (25%)
Query: 394 PSKSKLVGKVGICKRKSKRVAERALVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSR 453
P ++++V + + + +R+ E+A Q ++KK+A+ D +V +SR
Sbjct: 151 PGENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVL------------ESSR 198
Query: 454 KENEDANXXXXXXXXXXXXGKTRKKEMQIQDSRNLMHVRVPLGSSQEIVSNPPAISTNDS 513
E A +T KK ++ S L+ +S ++++NP
Sbjct: 199 MWREIAE-------------ETAKKYPDVELSHMLVD-----STSMQLIANPGQF----- 235
Query: 514 LRKDEFVAENMCKQELSDEKSWKTIEKGLF 543
D V ENM LSDE S T G+
Sbjct: 236 ---DVIVTENMFGDILSDEASVITGSLGML 262
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 687 KNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGD----GSLGVPDQKGDNY 741
K R +QC ++ CF+A +EC+ + RN + + G +P KG +Y
Sbjct: 322 KTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDY 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,054,453
Number of Sequences: 62578
Number of extensions: 998976
Number of successful extensions: 2133
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 88
length of query: 903
length of database: 14,973,337
effective HSP length: 108
effective length of query: 795
effective length of database: 8,214,913
effective search space: 6530855835
effective search space used: 6530855835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)