Query 002595
Match_columns 903
No_of_seqs 390 out of 1568
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 4E-120 8E-125 1023.5 25.4 660 45-901 51-739 (739)
2 KOG4442 Clathrin coat binding 100.0 4.9E-44 1.1E-48 408.3 13.1 180 676-891 78-262 (729)
3 KOG1080 Histone H3 (Lys4) meth 100.0 1E-31 2.2E-36 323.7 10.4 134 754-887 866-1003(1005)
4 KOG1082 Histone H3 (Lys9) meth 100.0 2.3E-28 4.9E-33 271.7 12.8 161 721-892 154-357 (364)
5 smart00317 SET SET (Su(var)3-9 99.9 1E-23 2.2E-28 192.0 11.1 113 756-868 2-116 (116)
6 KOG1083 Putative transcription 99.9 2.5E-24 5.4E-29 253.4 5.7 131 742-872 1165-1297(1306)
7 KOG1085 Predicted methyltransf 99.7 1.8E-18 3.8E-23 182.9 8.6 124 748-871 250-379 (392)
8 KOG1141 Predicted histone meth 99.7 9.5E-18 2.1E-22 194.2 8.5 73 815-887 1179-1260(1262)
9 COG2940 Proteins containing SE 99.6 1.2E-16 2.5E-21 184.1 2.3 139 749-887 327-478 (480)
10 PF00856 SET: SET domain; Int 99.5 2.6E-14 5.6E-19 135.1 4.8 105 765-869 1-162 (162)
11 KOG1081 Transcription factor N 99.0 2.2E-10 4.7E-15 132.0 2.3 131 742-888 302-436 (463)
12 KOG2589 Histone tail methylase 98.4 1.4E-07 3.1E-12 103.9 4.5 104 763-872 136-240 (453)
13 KOG2461 Transcription factor B 98.1 1.9E-06 4E-11 98.1 4.7 109 752-872 26-146 (396)
14 KOG1141 Predicted histone meth 97.4 6E-05 1.3E-09 90.0 2.5 56 741-796 786-841 (1262)
15 smart00570 AWS associated with 94.2 0.018 3.9E-07 48.3 0.8 11 742-752 40-50 (51)
16 smart00717 SANT SANT SWI3, AD 92.2 0.32 6.9E-06 37.7 5.1 43 533-577 2-45 (49)
17 cd00167 SANT 'SWI3, ADA2, N-Co 92.0 0.34 7.3E-06 37.1 5.0 41 534-576 1-42 (45)
18 PF05033 Pre-SET: Pre-SET moti 88.7 0.28 6.1E-06 45.6 2.2 37 653-689 45-103 (103)
19 KOG1079 Transcriptional repres 87.9 0.73 1.6E-05 55.8 5.4 114 39-189 15-128 (739)
20 KOG1171 Metallothionein-like p 80.3 0.61 1.3E-05 53.9 0.4 61 655-716 132-243 (406)
21 smart00570 AWS associated with 79.7 0.73 1.6E-05 38.9 0.6 27 662-688 17-43 (51)
22 KOG1337 N-methyltransferase [G 77.5 1.6 3.4E-05 51.4 2.7 40 828-870 239-278 (472)
23 PF03638 TCR: Tesmin/TSO1-like 77.5 1.3 2.9E-05 36.0 1.4 28 690-717 3-30 (42)
24 PF00249 Myb_DNA-binding: Myb- 74.8 7.5 0.00016 31.4 5.2 43 533-576 2-45 (48)
25 KOG4442 Clathrin coat binding 72.3 2.2 4.7E-05 52.2 2.1 36 662-697 83-121 (729)
26 PF11616 EZH2_WD-Binding: WD r 67.7 5.6 0.00012 30.2 2.6 30 55-102 1-30 (30)
27 KOG2084 Predicted histone tail 67.2 6.7 0.00014 44.8 4.6 38 828-869 208-246 (482)
28 PF13921 Myb_DNA-bind_6: Myb-l 65.9 15 0.00032 30.8 5.3 41 535-577 1-41 (60)
29 TIGR01557 myb_SHAQKYF myb-like 65.8 15 0.00032 31.7 5.2 45 533-578 4-53 (57)
30 PF05033 Pre-SET: Pre-SET moti 61.2 4.8 0.0001 37.4 1.6 18 718-746 86-103 (103)
31 PF03638 TCR: Tesmin/TSO1-like 57.9 6.7 0.00014 32.0 1.7 37 653-690 2-40 (42)
32 KOG1082 Histone H3 (Lys9) meth 54.8 9.2 0.0002 43.8 2.8 42 651-692 104-171 (364)
33 smart00508 PostSET Cysteine-ri 52.7 6.6 0.00014 29.0 0.8 14 875-888 3-16 (26)
34 KOG3813 Uncharacterized conser 32.6 20 0.00043 42.9 1.0 23 653-675 306-329 (640)
35 PF08666 SAF: SAF domain; Int 30.4 30 0.00065 28.9 1.5 16 851-866 3-18 (63)
36 KOG1081 Transcription factor N 28.8 18 0.00039 43.1 -0.1 99 763-863 122-230 (463)
37 PF00856 SET: SET domain; Int 28.8 30 0.00066 32.5 1.4 17 850-866 2-18 (162)
38 KOG4167 Predicted DNA-binding 27.5 81 0.0018 39.5 4.9 42 532-575 619-660 (907)
39 COG5259 RSC8 RSC chromatin rem 24.7 61 0.0013 38.6 3.1 38 531-570 278-315 (531)
40 KOG3813 Uncharacterized conser 22.4 40 0.00087 40.5 1.1 36 693-729 310-349 (640)
41 PF14100 PmoA: Methane oxygena 20.3 1.2E+02 0.0027 33.4 4.3 43 827-870 204-252 (271)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=3.7e-120 Score=1023.46 Aligned_cols=660 Identities=38% Similarity=0.585 Sum_probs=519.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhhhHhhhhcccccccccCCCchhhHHHHhhhcccccCcCCCCCCCCCccccccc
Q 002595 45 QVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDG 124 (903)
Q Consensus 45 qi~~~R~~~ik~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~l~~R~~~pl~~~~g~~~~~~~~~~~~~~~~~ 124 (903)
+++..++.+++++...+|.+...+|+.+- ++..+......++ +.++..++.-|++++|++..+..+.+.+.+-++
T Consensus 51 ~~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~~~n~---~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~- 125 (739)
T KOG1079|consen 51 KRRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPINELNA---VAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD- 125 (739)
T ss_pred hhhcccccccccccccccccccccccccc-Ccccccchhhhcc---cccccccccCChhhhcceecccceecccccccc-
Confidence 37777888888888888888888888885 6666665544444 788899999999999999887777665543332
Q ss_pred ccccccccCCCCCccccccccccCCCCCCCCceeEeecccccccccccccccceeeecCCCCeEEEecCchhcchhhhhh
Q 002595 125 YASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEK 204 (903)
Q Consensus 125 ~~~~~v~~~~~~~~~~~~~iklp~v~~lPpyttWifldrNqrMaeDqSVvGrRrIYYd~~g~EaLicSd~eee~~~ee~k 204 (903)
. |..|++|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+|||...+|+|
T Consensus 126 ----~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ek 188 (739)
T KOG1079|consen 126 ----E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEK 188 (739)
T ss_pred ----c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhc
Confidence 1 35599999999999999999999999999999999999999 99999999 9999996559999
Q ss_pred ccCCCCcCc-ccc------------------------ChhHHHHHHHHhhhccccCCCCCCCCCCccc-cchhhhc-HHH
Q 002595 205 KDFVDSEDY-ILR------------------------SPSEVKARYEILSKEESAVGGSNNGNDEHTM-NNFLVKD-LEA 257 (903)
Q Consensus 205 ~~f~e~ed~-~~~------------------------~~sei~eRy~~l~~~~~~~~~~~~~~~~~~~-~~~~~k~-l~~ 257 (903)
++|.|++|. |+| ++++|+|||.+|+....+..... +++... ++.+++. +.+
T Consensus 189 r~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~--~~~~~id~~~ae~~~r~~ 266 (739)
T KOG1079|consen 189 RDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEP--ECTPNIDGSSAEPVQREQ 266 (739)
T ss_pred ccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCc--ccccCCCccccChHHHHh
Confidence 999999998 788 89999999999997666665554 444444 4445555 679
Q ss_pred HhhhcccccccccccccccCcCCCCCccCCCCCCCCCCCCCCCCCCCcccchhhccccccccccCCCCCCCcccccccCC
Q 002595 258 ALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSS 337 (903)
Q Consensus 258 aldsFdnlFCRRClvfDC~lHg~sq~li~p~ekq~~~~~~~~d~~PCg~~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (903)
+|||||||||||||+|||+||| +|.++||+++...|.++..+..|||+.||..+.+..+... +
T Consensus 267 ~l~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m----------------~ 329 (739)
T KOG1079|consen 267 ALHSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKTM----------------S 329 (739)
T ss_pred hhcccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhhh----------------h
Confidence 9999999999999999999999 9999999999999999999999999999999854332200 0
Q ss_pred CCCCCccCCccccCCCCccccccccccccccccccCCCCcccccccCCccccccCCCCccccccccccccccchhHHHHH
Q 002595 338 DGAGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERA 417 (903)
Q Consensus 338 ~~~~~~~~~~~~~~~~~r~~k~~~~~~~~~~~~~~ses~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 417 (903)
.+.+ ..++.+ |.
T Consensus 330 ~~~~-~~~p~~-------------------------------------------------------g~------------ 341 (739)
T KOG1079|consen 330 AVVS-KCPPIR-------------------------------------------------------GD------------ 341 (739)
T ss_pred cccc-cCCCCc-------------------------------------------------------ch------------
Confidence 0000 000000 00
Q ss_pred HHHHHHhhhhhcccCcccccCCCCCCccccccccccccccccCCCcccCCCCCCCccccccchhhcccccccccccCCCC
Q 002595 418 LVCKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGS 497 (903)
Q Consensus 418 ~~~~~k~~~~~~~~~~~s~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 497 (903)
++||--.++..+|- +.+...++.+..+......+..+ +
T Consensus 342 -----~~qk~~~~~~~~s~--------------~~~~~~e~~g~~~d~~v~~~~~~-----------------------~ 379 (739)
T KOG1079|consen 342 -----IRQKLVKASSMDSD--------------DEHVEEEDKGHDDDDGVPRGFGG-----------------------S 379 (739)
T ss_pred -----hhhhhcccccCCcc--------------hhhccccccCccccccccccccc-----------------------c
Confidence 12221111111111 11122223333222222211100 0
Q ss_pred CccccCCCCCCCCCccchhhHHHhhhhhccccCCCCCchhhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHhh
Q 002595 498 SQEIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 577 (903)
Q Consensus 498 ~~~~~~~~~~~~~~~~~r~~e~v~~~~~~~e~~~~~~Wt~~E~~L~~k~~~ifg~NsC~iA~~Ll~g~KtC~eV~~ym~~ 577 (903)
.+....+..+..++...+++.+|.-.. ....+|+++|+.||++++.+||.|+|+|||+|+ +|||++||+||+.
T Consensus 380 ~~~v~~~~~~~~s~~~~~c~~~~~~~~-----~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~ 452 (739)
T KOG1079|consen 380 VNFVGEDDTSTHSSTNSICQNPVHGKK-----DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQK 452 (739)
T ss_pred cccccCCcccccccccccccCcccccC-----CcccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhc
Confidence 011111111222222333332222211 235689999999999999999999999999994 5999999999997
Q ss_pred hccccccccCcccchhccccccccCCCCCCCccccchhHHHHhhhcccccccccCCccccchhhhcccccCCCCCCCCCC
Q 002595 578 SENKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPC 657 (903)
Q Consensus 578 ~~~~~~~~~~~~~~s~~~~~~k~~~~~~~~~~~~~~r~r~~rr~~r~r~l~~~~ks~~~~~irkri~~~Kd~~~~~y~pC 657 (903)
.........+. ......++.|.+.+|+.++.+++.+.|++..++.+|. |+||
T Consensus 453 e~~~~~~~~~~----------------~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~~------------~qpC 504 (739)
T KOG1079|consen 453 EVLQGLYFDGR----------------FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVWN------------YQPC 504 (739)
T ss_pred chhhceecccc----------------cccccCcchhhHHHHhhhhHHHhhhcccccCCceeee------------cCcc
Confidence 65433222110 0123456778899999999999999999888877653 5566
Q ss_pred CCCCC--CCCCCccccCCccccCCCCCCccccCcCcCcccCCCCccCCCCcccccccccCCCCCCCcccccCCCCCCCCC
Q 002595 658 GCQTA--CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPD 735 (903)
Q Consensus 658 ~c~g~--C~~~C~C~~~g~~Cek~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECDPd~C~~C~~~Cg~~~l~~p~ 735 (903)
+|+++ |+.+|+|+.++++||++|+|+++|.|||+||+| ++||++++|||+++.|||||++|..||. .+.
T Consensus 505 ~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~ 575 (739)
T KOG1079|consen 505 DHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDH 575 (739)
T ss_pred cCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------ccc
Confidence 66544 478999999999999999999999999999999 9999999999999999999999999985 244
Q ss_pred CCCCcccccchhhhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCCCccccccCccE
Q 002595 736 QKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQF 815 (903)
Q Consensus 736 ~~g~~~~C~N~~lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~sYlf~L~~~~ 815 (903)
.++..+.|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|+++||..+.+|+|+|+.++
T Consensus 576 ~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dy 655 (739)
T KOG1079|consen 576 FDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDY 655 (739)
T ss_pred cccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccc
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCCCCCcccCCCCCCCCCCcCCCCCC
Q 002595 816 VLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPS 895 (903)
Q Consensus 816 vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~d~~pC~Cgsp~CrG~Kk~e~~~s 895 (903)
+|||+++||.+||+|||-+|||++.+++|+|+|||+|||.|.|.+||||||||+|+.++++-|-+.+. +.++.+....
T Consensus 656 viDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~--~s~k~e~~~~ 733 (739)
T KOG1079|consen 656 VIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIER--ESYKVELKIF 733 (739)
T ss_pred eEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccccccccCc--cccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988877 7788887777
Q ss_pred ccchhc
Q 002595 896 SGRAKK 901 (903)
Q Consensus 896 ~~rakk 901 (903)
|.+.+|
T Consensus 734 q~~~~~ 739 (739)
T KOG1079|consen 734 QATQQK 739 (739)
T ss_pred hhhcCC
Confidence 766554
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-44 Score=408.30 Aligned_cols=180 Identities=31% Similarity=0.579 Sum_probs=165.8
Q ss_pred ccCCCCCCccccCcCcCcccCCCCccCCCCcccccccccCCCCCCCcccccCCCCCCCCCCCCCcccccchhhhccccee
Q 002595 676 CEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQR 755 (903)
Q Consensus 676 Cek~C~C~~~C~nRf~GC~C~~~~C~t~~CpC~~~~rECDPd~C~~C~~~Cg~~~l~~p~~~g~~~~C~N~~lqrg~~kk 755 (903)
-...|.|+.+|+||+. ..||.++.|..|+. .|+|++||+.+..+
T Consensus 78 ~n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~-----------------~C~NQRFQkkqyA~ 121 (729)
T KOG4442|consen 78 ANGACACGEDCINRMT-------------------SIECSDRECPRCGV-----------------YCKNQRFQKKQYAK 121 (729)
T ss_pred cccccccCccccchhh-------------------hcccCCccCCCccc-----------------cccchhhhhhccCc
Confidence 3578999999999985 46788888887743 89999999999999
Q ss_pred EEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCcccccCCCC
Q 002595 756 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANHSP 833 (903)
Q Consensus 756 l~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~vIDA~~~GN~aRFINHSC 833 (903)
|.||.+..+||||+|.++|++|+||+||.||||+..|+.+|.+.|+..+ ++|+|.|....+|||+.+||++|||||||
T Consensus 122 vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRFiNHSC 201 (729)
T KOG4442|consen 122 VEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLARFINHSC 201 (729)
T ss_pred eeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999875 57888999999999999999999999999
Q ss_pred CCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCC---CCCCCcccCCCCCCCCCCcCC
Q 002595 834 DPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY---EPDRAPAWARKPEASGSKKEE 891 (903)
Q Consensus 834 ~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~---~~d~~pC~Cgsp~CrG~Kk~e 891 (903)
+|||++++|.|.|..||||||.|.|++||||||||+| +.+.++|+||+++|+|.-.-+
T Consensus 202 ~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 202 DPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred CCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCC
Confidence 9999999999999999999999999999999999975 457889999999999875433
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1e-31 Score=323.70 Aligned_cols=134 Identities=43% Similarity=0.805 Sum_probs=128.2
Q ss_pred eeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCcccccCC
Q 002595 754 QRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANH 831 (903)
Q Consensus 754 kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~vIDA~~~GN~aRFINH 831 (903)
++|..+++.+|||||||+++|.+|++|+||+||+|...-++.|++.|...+ .+|+|.+++..||||+.+||+||||||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InH 945 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINH 945 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeec
Confidence 458999999999999999999999999999999999999999999999875 699999999999999999999999999
Q ss_pred CCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCC--CCCcccCCCCCCCCC
Q 002595 832 SPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGS 887 (903)
Q Consensus 832 SC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~ 887 (903)
||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|.. +..||+||+|+|||+
T Consensus 946 sC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~ 1003 (1005)
T KOG1080|consen 946 SCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGF 1003 (1005)
T ss_pred ccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccc
Confidence 99999999999999999999999999999999999999865 467999999999997
No 4
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-28 Score=271.72 Aligned_cols=161 Identities=25% Similarity=0.402 Sum_probs=132.4
Q ss_pred CcccccCCCCCCCCCCCCCcccccchhhhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhccc
Q 002595 721 NCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIY 800 (903)
Q Consensus 721 ~C~~~Cg~~~l~~p~~~g~~~~C~N~~lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~y 800 (903)
+|+..|+|+. .|.|+.+|++.+.+|+|++++.+||||++.+.|++|+||+||+||+++..++++|...+
T Consensus 154 EC~~~C~C~~-----------~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~ 222 (364)
T KOG1082|consen 154 ECSVACGCHP-----------DCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLR 222 (364)
T ss_pred ccccCCCCCC-----------cCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccc
Confidence 4566677754 89999999999999999999999999999999999999999999999999999873322
Q ss_pred cc----CCCcccc---------------------ccCccEEEeccccCCcccccCCCCCCCceeEEEEEcCe----eEEE
Q 002595 801 DR----ENSSFLF---------------------NLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVG 851 (903)
Q Consensus 801 d~----~~~sYlf---------------------~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~RI~ 851 (903)
.. .+..+.+ .....++|||...||++|||||||.||+.+..+..++. .+|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ 302 (364)
T KOG1082|consen 223 EYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIG 302 (364)
T ss_pred cccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheee
Confidence 22 1111122 11357899999999999999999999999988877643 5999
Q ss_pred EEEecCCCCCCeeeeecCCCC--------------CCCcccCCCCCCCCCCcCCC
Q 002595 852 IFAKERISAGEELFYDYRYEP--------------DRAPAWARKPEASGSKKEEG 892 (903)
Q Consensus 852 ~fA~RDI~aGEELTfDYg~~~--------------d~~pC~Cgsp~CrG~Kk~e~ 892 (903)
|||+++|.|||||||||+... ....|.|+...|++......
T Consensus 303 ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~ 357 (364)
T KOG1082|consen 303 FFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAP 357 (364)
T ss_pred eeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCc
Confidence 999999999999999999652 34468999999998755443
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.90 E-value=1e-23 Score=192.01 Aligned_cols=113 Identities=42% Similarity=0.744 Sum_probs=101.5
Q ss_pred EEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCcccccCCCC
Q 002595 756 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANHSP 833 (903)
Q Consensus 756 l~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~vIDA~~~GN~aRFINHSC 833 (903)
++++.++.+|+||||+.+|++|++|++|.|.++...++..+...|.... ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 5677788999999999999999999999999999998887654444444 48899988889999999999999999999
Q ss_pred CCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeec
Q 002595 834 DPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDY 868 (903)
Q Consensus 834 ~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDY 868 (903)
.||+.+..+...+..++.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999998888888899999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.89 E-value=2.5e-24 Score=253.38 Aligned_cols=131 Identities=30% Similarity=0.602 Sum_probs=122.6
Q ss_pred cccchhhhc-ccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhh-hcccccCCCccccccCccEEEec
Q 002595 742 ECRNMKLLL-KQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR-GKIYDRENSSFLFNLNDQFVLDA 819 (903)
Q Consensus 742 ~C~N~~lqr-g~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R-~k~yd~~~~sYlf~L~~~~vIDA 819 (903)
.|.|+.|++ +..++|.|++.+..||||.|+++|++|+||+||+||||+..+++.| +..|.....+|+..+..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 477888876 4668999999999999999999999999999999999999999888 66788888999999999999999
Q ss_pred cccCCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCC
Q 002595 820 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP 872 (903)
Q Consensus 820 ~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 872 (903)
.++||.+||+||+|.|||.+++|.|+|..||++||+|||.+||||||||++..
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 99999999999999999999999999999999999999999999999997654
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.75 E-value=1.8e-18 Score=182.90 Aligned_cols=124 Identities=27% Similarity=0.429 Sum_probs=107.5
Q ss_pred hhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCCC--c--cccc-cCccEEEecccc
Q 002595 748 LLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS--S--FLFN-LNDQFVLDAYRK 822 (903)
Q Consensus 748 lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~--s--Ylf~-L~~~~vIDA~~~ 822 (903)
++.+....+.+..-.++|.||.|+..+.+|+||.||.|.+|.-.|+..|+..|..... . |+|. ++..|+|||+.-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 3445556677777778999999999999999999999999999999999999976542 3 4453 467899999975
Q ss_pred -CCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCC
Q 002595 823 -GDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE 871 (903)
Q Consensus 823 -GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~ 871 (903)
+-++|.||||-.+||.++++.++|.+++.++|.|||.+||||+||||..
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5567999999999999999999999999999999999999999999854
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.71 E-value=9.5e-18 Score=194.19 Aligned_cols=73 Identities=32% Similarity=0.567 Sum_probs=67.4
Q ss_pred EEEeccccCCcccccCCCCCCCceeEEEEEcCe----eEEEEEEecCCCCCCeeeeecCCCCCCC-----cccCCCCCCC
Q 002595 815 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRA-----PAWARKPEAS 885 (903)
Q Consensus 815 ~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~RI~~fA~RDI~aGEELTfDYg~~~d~~-----pC~Cgsp~Cr 885 (903)
|+|||...||++||+||||.||+.++.|+|+-+ +.|+|||.+-|+||+||||||+|+.... .|.||+.+||
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 799999999999999999999999999999854 6799999999999999999999987644 5999999999
Q ss_pred CC
Q 002595 886 GS 887 (903)
Q Consensus 886 G~ 887 (903)
|.
T Consensus 1259 gr 1260 (1262)
T KOG1141|consen 1259 GR 1260 (1262)
T ss_pred cc
Confidence 85
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.61 E-value=1.2e-16 Score=184.11 Aligned_cols=139 Identities=35% Similarity=0.539 Sum_probs=117.5
Q ss_pred hcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCCCcccc-ccCc-cEEEeccccCCcc
Q 002595 749 LLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLF-NLND-QFVLDAYRKGDKL 826 (903)
Q Consensus 749 qrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~sYlf-~L~~-~~vIDA~~~GN~a 826 (903)
.........+..+...|||+||.+.|++|++|.+|.|+++...++..|...+...+..+.| .+.. ..++|+...|+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~ 406 (480)
T COG2940 327 CKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQKAGDVA 406 (480)
T ss_pred cccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhhhccccc
Confidence 3344456677788899999999999999999999999999999999988777555554444 3333 7899999999999
Q ss_pred cccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCCCC-----------CcccCCCCCCCCC
Q 002595 827 KFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDR-----------APAWARKPEASGS 887 (903)
Q Consensus 827 RFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~d~-----------~pC~Cgsp~CrG~ 887 (903)
|||||||.|||.+....+.|..++.++|+|||.+||||++||+..... ..|.|+.+.|++.
T Consensus 407 r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 407 RFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred ceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 999999999999988877777899999999999999999999865433 3688999999875
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.48 E-value=2.6e-14 Score=135.15 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=74.2
Q ss_pred CceeeeecccCCCceEEEeccccccHHHHhhh---hccccc---------------------------------------
Q 002595 765 GWGAFLKNSVGKHEYLGEYTGELISHREADKR---GKIYDR--------------------------------------- 802 (903)
Q Consensus 765 G~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R---~k~yd~--------------------------------------- 802 (903)
|+||||+++|++|++|+++.+.+++..++... ...+..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999998776441 000000
Q ss_pred CCCc--cc-------------cccCccEEEeccccCCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeee
Q 002595 803 ENSS--FL-------------FNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYD 867 (903)
Q Consensus 803 ~~~s--Yl-------------f~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfD 867 (903)
.... +. .........++.....++.|+||||.|||.+......+...+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 0000 00 00012244566777789999999999999888766677889999999999999999999
Q ss_pred cC
Q 002595 868 YR 869 (903)
Q Consensus 868 Yg 869 (903)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.95 E-value=2.2e-10 Score=132.02 Aligned_cols=131 Identities=27% Similarity=0.425 Sum_probs=102.6
Q ss_pred cccchhhhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCC--CccccccCccEEEec
Q 002595 742 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDA 819 (903)
Q Consensus 742 ~C~N~~lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~vIDA 819 (903)
.|.|+.+....... . .+ +|..+|.+| +|++|+..+...|...-.... ..|+..+..+.+||+
T Consensus 302 ~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~ 365 (463)
T KOG1081|consen 302 RCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDA 365 (463)
T ss_pred ccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhccccccc
Confidence 78888876554333 1 11 889999999 899999999887754333222 234333444449999
Q ss_pred cccCCcccccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCC--CCCcccCCCCCCCCCC
Q 002595 820 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGSK 888 (903)
Q Consensus 820 ~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~K 888 (903)
..+||.+||+||||+|||....|.+.+..++++||.+.|++||||||+|.+.. ....|.|++.+|.+.+
T Consensus 366 ~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 366 GPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGSENCTETK 436 (463)
T ss_pred ccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccccCCcceEeecccccccCC
Confidence 99999999999999999999999999999999999999999999999998763 3446778888887664
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.44 E-value=1.4e-07 Score=103.93 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=75.2
Q ss_pred CCCceeeeecccCCCceEEEeccccccHHHHhhhhcccccCC-CccccccCccEEEeccccCCcccccCCCCCCCceeEE
Q 002595 763 VSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN-SSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKV 841 (903)
Q Consensus 763 ~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~-~sYlf~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~ 841 (903)
..|--|.+++.+.+|+-|--.+|-|+-..+++++.-.....+ .+.||.-... -|...-..++||||-|.|||.+.
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---caqLwLGPaafINHDCrpnCkFv- 211 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---CAQLWLGPAAFINHDCRPNCKFV- 211 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---hhhheeccHHhhcCCCCCCceee-
Confidence 367788999999999999999999988888877632222222 2233322110 01112246799999999999664
Q ss_pred EEEcCeeEEEEEEecCCCCCCeeeeecCCCC
Q 002595 842 IMVAGDHRVGIFAKERISAGEELFYDYRYEP 872 (903)
Q Consensus 842 v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 872 (903)
-.|..++.+-++|||.+|||||--||-++
T Consensus 212 --s~g~~tacvkvlRDIePGeEITcFYgs~f 240 (453)
T KOG2589|consen 212 --STGRDTACVKVLRDIEPGEEITCFYGSGF 240 (453)
T ss_pred --cCCCceeeeehhhcCCCCceeEEeecccc
Confidence 35778899999999999999999998554
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.14 E-value=1.9e-06 Score=98.11 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=83.1
Q ss_pred cceeEEEEEcCC--CCceeeeecccCCCceEEEecccc-ccHHHHhhhhcccccCCCcccccc---C-ccEEEecc--cc
Q 002595 752 QQQRVLLGRSDV--SGWGAFLKNSVGKHEYLGEYTGEL-ISHREADKRGKIYDRENSSFLFNL---N-DQFVLDAY--RK 822 (903)
Q Consensus 752 ~~kkl~V~~S~~--kG~GLFA~edI~kGefI~EY~GEI-Is~~Ea~~R~k~yd~~~~sYlf~L---~-~~~vIDA~--~~ 822 (903)
....+.|..+.+ .|.||++...|.+|+-.+-|.|++ ++... ...+..|+|.+ + ..++||++ ..
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~--------~~~n~~y~W~I~~~d~~~~~iDg~d~~~ 97 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS--------KSANNRYMWEIFSSDNGYEYIDGTDEEH 97 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc--------ccccCcceEEEEeCCCceEEeccCChhh
Confidence 567889988876 789999999999999999999998 22111 12244565544 2 34789987 46
Q ss_pred CCcccccCCCCC---CCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCCCC
Q 002595 823 GDKLKFANHSPD---PNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP 872 (903)
Q Consensus 823 GN~aRFINHSC~---PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 872 (903)
.|++||+|=+++ -|+.+.. ....|.++|+|+|.+||||.++|+-++
T Consensus 98 sNWmRYV~~Ar~~eeQNL~A~Q----~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 98 SNWMRYVNSARSEEEQNLLAFQ----IGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred cceeeeecccCChhhhhHHHHh----ccCceEEEecccCCCCCeEEEEeccch
Confidence 899999998884 5775532 345688999999999999999997544
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.45 E-value=6e-05 Score=89.99 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=51.8
Q ss_pred ccccchhhhcccceeEEEEEcCCCCceeeeecccCCCceEEEeccccccHHHHhhh
Q 002595 741 YECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR 796 (903)
Q Consensus 741 ~~C~N~~lqrg~~kkl~V~~S~~kG~GLFA~edI~kGefI~EY~GEIIs~~Ea~~R 796 (903)
..|.|+.+|.+.+.++.++++..+|||++...+|.+|.||+-|.|.++++.-++.-
T Consensus 786 ~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks 841 (1262)
T KOG1141|consen 786 PDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQISDKS 841 (1262)
T ss_pred HHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhhchhh
Confidence 38999999999999999999999999999999999999999999999888766543
No 15
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=94.18 E-value=0.018 Score=48.34 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.8
Q ss_pred cccchhhhccc
Q 002595 742 ECRNMKLLLKQ 752 (903)
Q Consensus 742 ~C~N~~lqrg~ 752 (903)
.|+|++||+++
T Consensus 40 ~C~NqrFqk~~ 50 (51)
T smart00570 40 YCSNQRFQKRQ 50 (51)
T ss_pred CccCcccccCc
Confidence 89999999875
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=92.22 E-value=0.32 Score=37.72 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=38.5
Q ss_pred CCchhhHhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHhh
Q 002595 533 KSWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 577 (903)
Q Consensus 533 ~~Wt~~E~~L~~k~~~ifg-~NsC~iA~~Ll~g~KtC~eV~~ym~~ 577 (903)
..|++.|..+|..++..|| .+...||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4699999999999999999 9999999987 68999999887654
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=92.03 E-value=0.34 Score=37.07 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=36.9
Q ss_pred CchhhHhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHh
Q 002595 534 SWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMT 576 (903)
Q Consensus 534 ~Wt~~E~~L~~k~~~ifg-~NsC~iA~~Ll~g~KtC~eV~~ym~ 576 (903)
.||..|..+|..++..|| .+...||+.+ +.+|-.+|-.|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHH
Confidence 599999999999999999 8999999987 6699999987765
No 18
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=88.73 E-value=0.28 Score=45.56 Aligned_cols=37 Identities=38% Similarity=1.048 Sum_probs=21.7
Q ss_pred CCCCCCCCCCC--CCCCccccCCc--------------------cccCCCCCCccccCc
Q 002595 653 QYNPCGCQTAC--GKQCPCLLNGT--------------------CCEKYCGCPKSCKNR 689 (903)
Q Consensus 653 ~y~pC~c~g~C--~~~C~C~~~g~--------------------~Cek~C~C~~~C~nR 689 (903)
....|+|.+.| ...|.|..... .|...|+|+..|.||
T Consensus 45 ~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 45 FLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 45689999889 47899886542 788999999899887
No 19
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=87.89 E-value=0.73 Score=55.78 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhHhhhhcccccccccCCCchhhHHHHhhhcccccCcCCCCCCCCCc
Q 002595 39 IDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSH 118 (903)
Q Consensus 39 i~~lk~qi~~~R~~~ik~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~l~~R~~~pl~~~~g~~~~~~~~~~~ 118 (903)
+.|+|+ ..+...+|.+.-.|+.....-+..+ +..|..|+.+|+...--.+-....++..
T Consensus 15 ~rq~~r---~~~~~~~K~~~~~~~~~~~e~i~~~------------------~~E~k~~~~~~~~~~~~~~~~~r~k~~~ 73 (739)
T KOG1079|consen 15 SRQRKR---VREADEGKSAKSKNPADRLEKIKIL------------------NCEWKKRRLKPVRSAKEVDGDIRVKVDL 73 (739)
T ss_pred HHHHHH---HHHHhhhhhhcccCHHHHHHHHHHH------------------HHHHhhhhcccccccccccccccccccc
Confidence 677777 4555566666666665555555544 4455567777766543333222222221
Q ss_pred ccccccccccccccCCCCCccccccccccCCCCCCCCceeEeecccccccccccccccceeeecCCCCeEE
Q 002595 119 ISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEAL 189 (903)
Q Consensus 119 ~~~~~~~~~~~v~~~~~~~~~~~~~iklp~v~~lPpyttWifldrNqrMaeDqSVvGrRrIYYd~~g~EaL 189 (903)
. +.++. ++-+.++.-.|..|..+|-+++|-.+..|. |.+|.+|+ -.|-| .|.|.+
T Consensus 74 ~--------~~~~~---~~~~~~~i~~~n~~~~v~~~~~~~~~q~nf-mv~~~~~~--~~ip~--~~~~v~ 128 (739)
T KOG1079|consen 74 D--------TSIFD---FPSQKSPINELNAVAQVPIMYSWPPLQQNF-MVEDETVL--HNIPY--MGDEVL 128 (739)
T ss_pred c--------ccccc---CcccccchhhhcccccccccccCChhhhcc-eeccccee--ccccc--cccccc
Confidence 1 00111 222334555688999999999999999999 99999998 78888 888877
No 20
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=80.28 E-value=0.61 Score=53.88 Aligned_cols=61 Identities=34% Similarity=1.001 Sum_probs=49.8
Q ss_pred CCCCCC-CCCC-CCCccccCCccccCCCCCCccccCcC------------------------------------------
Q 002595 655 NPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF------------------------------------------ 690 (903)
Q Consensus 655 ~pC~c~-g~C~-~~C~C~~~g~~Cek~C~C~~~C~nRf------------------------------------------ 690 (903)
.+|.|. ..|- -.|.|...|.+|..+|.|- +|.|..
T Consensus 132 ~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~ 210 (406)
T KOG1171|consen 132 KKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKT 210 (406)
T ss_pred cCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhcc
Confidence 455553 3443 3699999999999999998 677763
Q ss_pred -------cCcccCCCCccCCCCcccccccccCC
Q 002595 691 -------RGCHCAKSQCRSRQCPCFAADRECDP 716 (903)
Q Consensus 691 -------~GC~C~~~~C~t~~CpC~~~~rECDP 716 (903)
.||+|.+..|..+-|.||.++.-|..
T Consensus 211 ~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~ 243 (406)
T KOG1171|consen 211 PASARHKKGCNCKKSGCLKKYCECYQAGVLCSS 243 (406)
T ss_pred chhhhhcCCCCCccccchHHHHHHHhcCCCccc
Confidence 58999999999999999999988854
No 21
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=79.68 E-value=0.73 Score=38.88 Aligned_cols=27 Identities=33% Similarity=0.752 Sum_probs=12.4
Q ss_pred CCCCCCccccCCccccCCCCCCccccC
Q 002595 662 ACGKQCPCLLNGTCCEKYCGCPKSCKN 688 (903)
Q Consensus 662 ~C~~~C~C~~~g~~Cek~C~C~~~C~n 688 (903)
+||++|.....-+.|...|.|+..|.|
T Consensus 17 ~CgsdClNR~l~~EC~~~C~~G~~C~N 43 (51)
T smart00570 17 ACGSDCLNRMLLIECSSDCPCGSYCSN 43 (51)
T ss_pred CcchHHHHHHHhhhcCCCCCCCcCccC
Confidence 344444444444444444444444444
No 22
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=77.55 E-value=1.6 Score=51.42 Aligned_cols=40 Identities=38% Similarity=0.527 Sum_probs=30.9
Q ss_pred ccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCCeeeeecCC
Q 002595 828 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 870 (903)
Q Consensus 828 FINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~ 870 (903)
+.||++.+. ...+..-+..+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~---~~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI---KAGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc---cccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 579999882 2222333448999999999999999999974
No 23
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=77.47 E-value=1.3 Score=35.99 Aligned_cols=28 Identities=46% Similarity=1.143 Sum_probs=25.9
Q ss_pred CcCcccCCCCccCCCCcccccccccCCC
Q 002595 690 FRGCHCAKSQCRSRQCPCFAADRECDPD 717 (903)
Q Consensus 690 f~GC~C~~~~C~t~~CpC~~~~rECDPd 717 (903)
..||.|.++.|...-|.||+++..|.+.
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~g~~C~~~ 30 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQAGRFCTPN 30 (42)
T ss_pred CCCCcccCcChhhhhCHHHHCcCcCCCC
Confidence 5799999999999999999999999885
No 24
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=74.80 E-value=7.5 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCchhhHhHHHHHHHHhhCCc-cHHHHHhhhCCCccHHHHHHHHh
Q 002595 533 KSWKTIEKGLFDKGVEIFGRN-SCLIARNLLNGLKTCWEVFQYMT 576 (903)
Q Consensus 533 ~~Wt~~E~~L~~k~~~ifg~N-sC~iA~~Ll~g~KtC~eV~~ym~ 576 (903)
..||+.|..+|..++..||.+ .=.||..+ ++.+|=.++-.+.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRM-PGGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHH-SSSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 469999999999999999998 88999877 23788777766554
No 25
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=2.2 Score=52.17 Aligned_cols=36 Identities=39% Similarity=0.809 Sum_probs=31.0
Q ss_pred CCCCCCccccCCccccC-CCC-CCccccC-cCcCcccCC
Q 002595 662 ACGKQCPCLLNGTCCEK-YCG-CPKSCKN-RFRGCHCAK 697 (903)
Q Consensus 662 ~C~~~C~C~~~g~~Cek-~C~-C~~~C~n-Rf~GC~C~~ 697 (903)
.||.+|.|....++|.. .|. |+..|.| ||+-|.|++
T Consensus 83 ~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~ 121 (729)
T KOG4442|consen 83 ACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAK 121 (729)
T ss_pred ccCccccchhhhcccCCccCCCccccccchhhhhhccCc
Confidence 57889999999999998 999 9999999 788666643
No 26
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=67.67 E-value=5.6 Score=30.21 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=19.7
Q ss_pred HHHHHHhhhhHHHHHhhhhHhhhhcccccccccCCCchhhHHHHhhhc
Q 002595 55 QRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREAL 102 (903)
Q Consensus 55 k~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~l~~R~~~pl 102 (903)
|..|..||+|++..|..| |..|++|..+|+
T Consensus 1 Kalf~sNr~Ki~e~t~iL------------------N~eWk~lRiQpv 30 (30)
T PF11616_consen 1 KALFSSNRQKIQERTDIL------------------NEEWKKLRIQPV 30 (30)
T ss_dssp --HHHHHHHHHHHHHHHH------------------HHHHHH------
T ss_pred CchhHhhHHHHHHHHHHH------------------HHHHHHhccCCC
Confidence 568999999999999999 667888777764
No 27
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=67.23 E-value=6.7 Score=44.80 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=28.2
Q ss_pred ccCCCCCCCceeEEEEEcCeeEEEEEEecCCCCCC-eeeeecC
Q 002595 828 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGE-ELFYDYR 869 (903)
Q Consensus 828 FINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGE-ELTfDYg 869 (903)
++||||.||+. +...+.. +.+++...+.+++ ||+..|-
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~ 246 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYT 246 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeec
Confidence 78999999996 3334444 4566777777776 9999994
No 28
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=65.93 E-value=15 Score=30.81 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=32.1
Q ss_pred chhhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHhh
Q 002595 535 WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 577 (903)
Q Consensus 535 Wt~~E~~L~~k~~~ifg~NsC~iA~~Ll~g~KtC~eV~~ym~~ 577 (903)
||..|..++..++..||.+-..||..| |.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999987 66776777655544
No 29
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=65.83 E-value=15 Score=31.70 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=36.9
Q ss_pred CCchhhHhHHHHHHHHhhCC-cc---HHHHHhhhCCCc-cHHHHHHHHhhh
Q 002595 533 KSWKTIEKGLFDKGVEIFGR-NS---CLIARNLLNGLK-TCWEVFQYMTCS 578 (903)
Q Consensus 533 ~~Wt~~E~~L~~k~~~ifg~-Ns---C~iA~~Ll~g~K-tC~eV~~ym~~~ 578 (903)
..||+.|-.+|..+++.||. +. =.|+.++ ..++ |-.+|-++++..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 46999999999999999998 66 7787765 3456 889999888753
No 30
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=61.19 E-value=4.8 Score=37.38 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=8.6
Q ss_pred CCCCcccccCCCCCCCCCCCCCcccccch
Q 002595 718 VCRNCWISCGDGSLGVPDQKGDNYECRNM 746 (903)
Q Consensus 718 ~C~~C~~~Cg~~~l~~p~~~g~~~~C~N~ 746 (903)
.=.+|+..|+++. .|.||
T Consensus 86 ~i~EC~~~C~C~~-----------~C~NR 103 (103)
T PF05033_consen 86 PIFECNDNCGCSP-----------SCRNR 103 (103)
T ss_dssp EEE---TTSSS-T-----------TSTT-
T ss_pred eEEeCCCCCCCCC-----------CCCCC
Confidence 3346777777753 78885
No 31
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=57.87 E-value=6.7 Score=32.04 Aligned_cols=37 Identities=32% Similarity=0.923 Sum_probs=30.3
Q ss_pred CCCCCCCC-CCCC-CCCccccCCccccCCCCCCccccCcC
Q 002595 653 QYNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF 690 (903)
Q Consensus 653 ~y~pC~c~-g~C~-~~C~C~~~g~~Cek~C~C~~~C~nRf 690 (903)
+..+|.|. ..|- ..|.|...|.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 34689995 7786 4699999999999999994 788864
No 32
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=54.80 E-value=9.2 Score=43.79 Aligned_cols=42 Identities=31% Similarity=0.822 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCCCCC----CccccC----------------------CccccCCCCCCccccCcCcC
Q 002595 651 CRQYNPCGCQTACGKQ----CPCLLN----------------------GTCCEKYCGCPKSCKNRFRG 692 (903)
Q Consensus 651 ~~~y~pC~c~g~C~~~----C~C~~~----------------------g~~Cek~C~C~~~C~nRf~G 692 (903)
+..-.+|.|...|... |.|... ...|...|+|+.+|.||+..
T Consensus 104 ~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q 171 (364)
T KOG1082|consen 104 CENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQ 171 (364)
T ss_pred CccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhhc
Confidence 3455678887666532 788761 11799999999999999863
No 33
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=52.71 E-value=6.6 Score=29.04 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.5
Q ss_pred CcccCCCCCCCCCC
Q 002595 875 APAWARKPEASGSK 888 (903)
Q Consensus 875 ~pC~Cgsp~CrG~K 888 (903)
.+|+||+++|||..
T Consensus 3 ~~C~CGs~~CRG~l 16 (26)
T smart00508 3 QPCLCGAPNCRGFL 16 (26)
T ss_pred eeeeCCCcccccee
Confidence 58999999999884
No 34
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=32.57 E-value=20 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.794 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCC-CCCccccCCcc
Q 002595 653 QYNPCGCQTACG-KQCPCLLNGTC 675 (903)
Q Consensus 653 ~y~pC~c~g~C~-~~C~C~~~g~~ 675 (903)
+--+|+|.+-|+ ..|.|.+.|+-
T Consensus 306 eeCGCsCr~~CdPETCaCSqaGIk 329 (640)
T KOG3813|consen 306 EECGCSCRGVCDPETCACSQAGIK 329 (640)
T ss_pred HhhCCcccceeChhhcchhccCce
Confidence 444677777777 46777777763
No 35
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=30.40 E-value=30 Score=28.91 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=11.9
Q ss_pred EEEEecCCCCCCeeee
Q 002595 851 GIFAKERISAGEELFY 866 (903)
Q Consensus 851 ~~fA~RDI~aGEELTf 866 (903)
.++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 4789999999999963
No 36
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=28.77 E-value=18 Score=43.05 Aligned_cols=99 Identities=11% Similarity=-0.069 Sum_probs=66.2
Q ss_pred CCCce---eeeecccCCCceEEEeccccccHHH--Hhhh-----hcccccCCCccccccCccEEEeccccCCcccccCCC
Q 002595 763 VSGWG---AFLKNSVGKHEYLGEYTGELISHRE--ADKR-----GKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHS 832 (903)
Q Consensus 763 ~kG~G---LFA~edI~kGefI~EY~GEIIs~~E--a~~R-----~k~yd~~~~sYlf~L~~~~vIDA~~~GN~aRFINHS 832 (903)
..+|+ ..|...+..|++|+.++|+..-..- ...+ ++.+ ....|....-.....++...|+..++++|+
T Consensus 122 ~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~g~~~~~l~~~ 199 (463)
T KOG1081|consen 122 KCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHD--HVNFFGCYAWTHEKRVFPYEGQSSKLIPHS 199 (463)
T ss_pred ccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccc--cceeccchhhHHHhhhhhccchHHHhhhhc
Confidence 34555 6777799999999999999865441 1111 0111 011111100011223344499999999999
Q ss_pred CCCCceeEEEEEcCeeEEEEEEecCCCCCCe
Q 002595 833 PDPNCYAKVIMVAGDHRVGIFAKERISAGEE 863 (903)
Q Consensus 833 C~PNc~~~~v~V~G~~RI~~fA~RDI~aGEE 863 (903)
+.|+-....+...+..|+..++.+-++-+.-
T Consensus 200 ~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~ 230 (463)
T KOG1081|consen 200 KKPASTMSEKIKEAKARFGKLKAQWEAGIKQ 230 (463)
T ss_pred cccchhhhhhhhcccchhhhcccchhhccch
Confidence 9999988888889999999999998888776
No 37
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=28.77 E-value=30 Score=32.49 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=12.9
Q ss_pred EEEEEecCCCCCCeeee
Q 002595 850 VGIFAKERISAGEELFY 866 (903)
Q Consensus 850 I~~fA~RDI~aGEELTf 866 (903)
.||||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 47999999999998873
No 38
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=27.46 E-value=81 Score=39.52 Aligned_cols=42 Identities=19% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCCchhhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHH
Q 002595 532 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYM 575 (903)
Q Consensus 532 ~~~Wt~~E~~L~~k~~~ifg~NsC~iA~~Ll~g~KtC~eV~~ym 575 (903)
..-||+.|+-||.+++-.+-+++-+|+..| .+||=+|--+|.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVeyY 660 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEYY 660 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHHH
Confidence 456999999999999999999999999877 567755554443
No 39
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=24.67 E-value=61 Score=38.63 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=33.3
Q ss_pred CCCCchhhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHH
Q 002595 531 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWE 570 (903)
Q Consensus 531 ~~~~Wt~~E~~L~~k~~~ifg~NsC~iA~~Ll~g~KtC~e 570 (903)
....|+.-|.-|++.|+++||..-=-||+.+ |+||=-|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~Eq 315 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQ 315 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHH
Confidence 3578999999999999999999999999987 8888433
No 40
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=22.37 E-value=40 Score=40.45 Aligned_cols=36 Identities=28% Similarity=0.768 Sum_probs=22.0
Q ss_pred cccCCCCccCCCCcccccccccC----CCCCCCcccccCCC
Q 002595 693 CHCAKSQCRSRQCPCFAADRECD----PDVCRNCWISCGDG 729 (903)
Q Consensus 693 C~C~~~~C~t~~CpC~~~~rECD----Pd~C~~C~~~Cg~~ 729 (903)
|.|. +-|....|.|-+++..|. .--|..|...|++-
T Consensus 310 CsCr-~~CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgNp 349 (640)
T KOG3813|consen 310 CSCR-GVCDPETCACSQAGIKCQVDRGEFPCGCFREGCGNP 349 (640)
T ss_pred Cccc-ceeChhhcchhccCceEeecCcccccccchhhcCCC
Confidence 3443 456777777777777662 22366677777664
No 41
>PF14100 PmoA: Methane oxygenase PmoA
Probab=20.28 E-value=1.2e+02 Score=33.44 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=32.5
Q ss_pred cccCCCCCCCceeEEEEEcCeeEEEE------EEecCCCCCCeeeeecCC
Q 002595 827 KFANHSPDPNCYAKVIMVAGDHRVGI------FAKERISAGEELFYDYRY 870 (903)
Q Consensus 827 RFINHSC~PNc~~~~v~V~G~~RI~~------fA~RDI~aGEELTfDYg~ 870 (903)
-||+|--+||- ...|.+.+...+++ ..--.|++||.|++.|..
T Consensus 204 ~~~dhP~N~~~-P~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~ 252 (271)
T PF14100_consen 204 AILDHPSNPNY-PTPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRV 252 (271)
T ss_pred EEEeCCCCCCC-CcceEEeccCcceecccccccCceecCCCCeEEEEEEE
Confidence 48899988875 46788886655444 455679999999999963
Done!