Query 002596
Match_columns 902
No_of_seqs 361 out of 3008
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1E-140 2E-145 1073.0 67.6 871 4-891 2-885 (885)
2 KOG2171 Karyopherin (importin) 100.0 5E-83 1.1E-87 699.5 77.7 817 15-890 4-1074(1075)
3 KOG1241 Karyopherin (importin) 100.0 1.3E-63 2.9E-68 518.8 65.1 739 16-829 2-817 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 6.2E-53 1.3E-57 423.8 64.7 667 16-757 5-731 (858)
5 KOG1991 Nuclear transport rece 100.0 2.6E-43 5.6E-48 379.4 65.4 770 14-840 3-867 (1010)
6 KOG2171 Karyopherin (importin) 100.0 3E-37 6.5E-42 339.9 64.2 675 62-828 15-767 (1075)
7 KOG2274 Predicted importin 9 [ 100.0 4.4E-35 9.4E-40 311.9 61.9 741 15-824 4-835 (1005)
8 KOG1992 Nuclear export recepto 100.0 1.3E-33 2.9E-38 297.4 62.1 656 12-718 2-777 (960)
9 KOG1993 Nuclear transport rece 100.0 1.4E-32 3E-37 288.2 58.8 807 17-889 2-974 (978)
10 KOG2023 Nuclear transport rece 100.0 8.4E-34 1.8E-38 291.4 48.6 715 49-863 11-817 (885)
11 COG5656 SXM1 Importin, protein 100.0 1.9E-30 4E-35 270.2 59.5 751 15-825 3-851 (970)
12 KOG1241 Karyopherin (importin) 100.0 4.8E-29 1.1E-33 261.4 59.8 744 62-874 12-821 (859)
13 KOG1824 TATA-binding protein-i 100.0 1.7E-26 3.6E-31 246.8 63.4 803 19-901 9-920 (1233)
14 COG5215 KAP95 Karyopherin (imp 100.0 1.4E-23 3E-28 212.8 59.3 639 62-786 105-814 (858)
15 KOG1824 TATA-binding protein-i 100.0 1.8E-23 4E-28 223.7 54.9 669 56-803 10-744 (1233)
16 KOG0213 Splicing factor 3b, su 99.9 1.4E-20 3E-25 196.6 59.1 697 7-780 355-1106(1172)
17 KOG2021 Nuclear mRNA export fa 99.9 1.6E-20 3.4E-25 197.0 54.8 646 15-713 3-785 (980)
18 COG5657 CSE1 CAS/CSE protein i 99.9 3.1E-20 6.7E-25 200.2 50.8 753 16-825 5-836 (947)
19 KOG2022 Nuclear transport rece 99.9 8.6E-16 1.9E-20 165.3 71.6 763 12-867 4-920 (982)
20 COG5101 CRM1 Importin beta-rel 99.9 9.6E-16 2.1E-20 158.1 64.1 504 14-554 13-653 (1053)
21 COG5181 HSH155 U2 snRNP splice 99.9 2.2E-17 4.8E-22 169.6 52.1 664 14-780 167-911 (975)
22 PLN03200 cellulose synthase-in 99.9 5E-17 1.1E-21 195.8 61.1 741 14-842 12-842 (2102)
23 PLN03200 cellulose synthase-in 99.9 5.6E-17 1.2E-21 195.4 57.9 720 26-828 69-865 (2102)
24 KOG0213 Splicing factor 3b, su 99.9 6.4E-15 1.4E-19 154.8 60.7 638 105-870 453-1113(1172)
25 KOG0915 Uncharacterized conser 99.8 1.9E-17 4.1E-22 187.1 37.7 533 221-826 818-1387(1702)
26 KOG1991 Nuclear transport rece 99.8 1.9E-14 4E-19 157.6 58.8 667 104-830 15-807 (1010)
27 KOG1242 Protein containing ada 99.8 8E-16 1.7E-20 161.5 39.0 511 103-716 27-547 (569)
28 KOG0915 Uncharacterized conser 99.8 1.3E-14 2.8E-19 164.7 50.6 631 62-784 829-1513(1702)
29 KOG2081 Nuclear transport regu 99.7 6.4E-14 1.4E-18 145.0 39.7 461 34-552 2-539 (559)
30 COG5181 HSH155 U2 snRNP splice 99.7 9.8E-14 2.1E-18 143.2 39.7 648 105-881 258-931 (975)
31 KOG1242 Protein containing ada 99.7 3.5E-14 7.5E-19 149.3 35.9 514 190-804 27-546 (569)
32 KOG0212 Uncharacterized conser 99.7 2.7E-13 5.8E-18 139.1 39.6 412 185-710 5-425 (675)
33 PF01602 Adaptin_N: Adaptin N 99.7 3.6E-12 7.9E-17 145.9 46.6 507 15-688 7-520 (526)
34 KOG0212 Uncharacterized conser 99.7 1.3E-12 2.7E-17 134.3 37.1 411 97-574 4-426 (675)
35 PTZ00429 beta-adaptin; Provisi 99.7 1.2E-11 2.5E-16 140.0 48.1 411 17-516 70-515 (746)
36 KOG0166 Karyopherin (importin) 99.7 1.1E-14 2.4E-19 152.3 21.8 362 388-824 108-483 (514)
37 KOG1248 Uncharacterized conser 99.7 1.7E-09 3.6E-14 122.0 63.2 755 46-886 91-917 (1176)
38 PTZ00429 beta-adaptin; Provisi 99.7 3.9E-11 8.4E-16 135.8 51.5 432 22-552 39-474 (746)
39 PF01602 Adaptin_N: Adaptin N 99.6 6.1E-12 1.3E-16 144.0 45.0 508 183-819 7-520 (526)
40 PF08506 Cse1: Cse1; InterPro 99.6 1.4E-13 3E-18 143.7 23.4 275 198-503 58-370 (370)
41 KOG0211 Protein phosphatase 2A 99.5 1E-10 2.2E-15 130.7 37.9 538 95-739 119-666 (759)
42 KOG0166 Karyopherin (importin) 99.5 1.1E-11 2.4E-16 130.1 27.8 358 95-552 68-439 (514)
43 KOG1248 Uncharacterized conser 99.5 1.2E-07 2.6E-12 107.5 59.9 689 6-761 130-923 (1176)
44 KOG2274 Predicted importin 9 [ 99.5 7.8E-08 1.7E-12 105.3 56.2 690 54-830 7-787 (1005)
45 COG5656 SXM1 Importin, protein 99.4 5.8E-07 1.3E-11 96.4 60.2 337 479-828 460-806 (970)
46 KOG0211 Protein phosphatase 2A 99.4 7.4E-10 1.6E-14 123.9 37.3 576 128-818 79-659 (759)
47 KOG1943 Beta-tubulin folding c 99.4 2.8E-08 6.1E-13 111.0 47.1 513 89-693 337-882 (1133)
48 KOG0392 SNF2 family DNA-depend 99.4 2.7E-08 5.9E-13 112.2 44.5 228 637-890 750-980 (1549)
49 PRK09687 putative lyase; Provi 99.4 1.1E-10 2.4E-15 118.1 23.9 253 133-505 25-279 (280)
50 PRK13800 putative oxidoreducta 99.4 1.5E-10 3.3E-15 138.1 28.2 273 96-505 624-896 (897)
51 KOG1992 Nuclear export recepto 99.4 4.6E-07 1E-11 98.4 49.9 656 62-808 16-778 (960)
52 PRK13800 putative oxidoreducta 99.4 2E-10 4.3E-15 137.1 27.8 273 133-545 623-895 (897)
53 KOG1060 Vesicle coat complex A 99.3 5.7E-09 1.2E-13 112.0 35.0 425 17-545 73-529 (968)
54 PF10508 Proteasom_PSMB: Prote 99.3 7.3E-09 1.6E-13 115.0 37.7 397 98-550 43-463 (503)
55 PRK09687 putative lyase; Provi 99.3 4.5E-10 9.8E-15 113.7 24.2 253 181-545 24-278 (280)
56 KOG1060 Vesicle coat complex A 99.3 6.3E-08 1.4E-12 104.3 39.5 475 183-786 38-538 (968)
57 PF10508 Proteasom_PSMB: Prote 99.3 1.3E-08 2.9E-13 112.9 36.2 387 394-864 43-462 (503)
58 KOG2020 Nuclear transport rece 99.3 3.4E-06 7.4E-11 97.9 55.6 237 10-251 5-259 (1041)
59 COG5064 SRP1 Karyopherin (impo 99.2 1.9E-10 4.2E-15 111.0 13.5 352 133-549 73-443 (526)
60 KOG1943 Beta-tubulin folding c 99.2 2.8E-05 6.1E-10 87.8 52.4 423 365-824 355-838 (1133)
61 KOG1061 Vesicle coat complex A 99.1 1.9E-07 4.1E-12 101.6 32.7 417 19-507 53-488 (734)
62 KOG1062 Vesicle coat complex A 99.1 2.5E-06 5.3E-11 92.9 40.2 306 134-526 110-432 (866)
63 KOG1020 Sister chromatid cohes 99.1 0.00011 2.3E-09 86.0 53.9 139 97-249 820-959 (1692)
64 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.9E-09 4.1E-14 88.4 11.3 94 408-507 2-95 (97)
65 KOG1020 Sister chromatid cohes 99.1 8.8E-05 1.9E-09 86.6 51.6 162 110-287 794-956 (1692)
66 PF03378 CAS_CSE1: CAS/CSE pro 99.0 1.4E-07 3.1E-12 101.1 27.9 351 511-889 17-435 (435)
67 COG5064 SRP1 Karyopherin (impo 99.0 6.5E-08 1.4E-12 93.8 20.3 350 62-509 82-444 (526)
68 KOG1059 Vesicle coat complex A 99.0 3.7E-06 7.9E-11 90.2 35.1 189 86-292 137-366 (877)
69 PF03810 IBN_N: Importin-beta 99.0 2.9E-09 6.2E-14 85.3 8.8 67 36-103 1-76 (77)
70 KOG4224 Armadillo repeat prote 99.0 2.3E-08 5E-13 97.8 16.0 334 367-739 101-448 (550)
71 KOG1240 Protein kinase contain 99.0 1.5E-07 3.2E-12 106.2 23.9 294 132-510 423-727 (1431)
72 KOG1059 Vesicle coat complex A 98.9 7.3E-06 1.6E-10 88.0 34.0 262 126-509 139-402 (877)
73 COG5240 SEC21 Vesicle coat com 98.9 2.8E-05 6.1E-10 81.3 37.2 498 107-736 39-554 (898)
74 KOG1062 Vesicle coat complex A 98.9 2E-05 4.4E-10 86.0 37.3 196 86-292 135-380 (866)
75 PF12460 MMS19_C: RNAPII trans 98.9 2.9E-06 6.4E-11 92.5 31.6 366 436-841 2-412 (415)
76 PF12460 MMS19_C: RNAPII trans 98.9 4.3E-06 9.3E-11 91.2 32.3 198 366-570 205-413 (415)
77 KOG0414 Chromosome condensatio 98.9 0.00056 1.2E-08 78.5 55.0 108 663-784 919-1030(1251)
78 PF12348 CLASP_N: CLASP N term 98.8 3.6E-07 7.8E-12 91.4 18.8 203 671-886 15-227 (228)
79 KOG4224 Armadillo repeat prote 98.8 1E-06 2.2E-11 86.6 20.1 314 397-741 175-497 (550)
80 PF12348 CLASP_N: CLASP N term 98.7 3.4E-07 7.3E-12 91.6 16.7 180 363-555 19-212 (228)
81 KOG1993 Nuclear transport rece 98.7 0.00099 2.1E-08 73.1 53.1 345 407-784 412-772 (978)
82 KOG1061 Vesicle coat complex A 98.7 3.2E-05 7E-10 84.7 29.5 453 26-551 24-488 (734)
83 KOG1240 Protein kinase contain 98.6 5.9E-06 1.3E-10 93.7 24.0 286 406-740 437-728 (1431)
84 KOG1078 Vesicle coat complex C 98.6 0.00057 1.2E-08 74.9 36.9 473 126-736 59-531 (865)
85 PF13513 HEAT_EZ: HEAT-like re 98.6 1.1E-07 2.5E-12 69.9 5.6 55 406-460 1-55 (55)
86 PF12755 Vac14_Fab1_bd: Vacuol 98.6 8.7E-07 1.9E-11 72.8 10.8 86 449-539 2-87 (97)
87 KOG4535 HEAT and armadillo rep 98.5 0.00055 1.2E-08 70.5 32.1 553 143-761 8-625 (728)
88 KOG2032 Uncharacterized conser 98.5 0.00011 2.4E-09 76.1 27.5 321 375-737 203-531 (533)
89 COG5240 SEC21 Vesicle coat com 98.5 0.0028 6.1E-08 66.9 41.3 487 176-780 61-554 (898)
90 KOG2062 26S proteasome regulat 98.5 0.0039 8.5E-08 68.0 38.1 318 406-806 356-678 (929)
91 COG5096 Vesicle coat complex, 98.4 0.0035 7.6E-08 70.7 37.7 161 32-210 35-196 (757)
92 KOG4535 HEAT and armadillo rep 98.4 0.0014 3.1E-08 67.6 31.6 498 63-616 8-623 (728)
93 cd00020 ARM Armadillo/beta-cat 98.4 1.3E-06 2.7E-11 77.5 9.2 111 390-508 8-120 (120)
94 KOG1058 Vesicle coat complex C 98.4 0.0008 1.7E-08 73.3 30.9 135 13-162 21-165 (948)
95 KOG2259 Uncharacterized conser 98.3 0.00047 1E-08 73.9 26.8 296 223-598 200-515 (823)
96 KOG2259 Uncharacterized conser 98.3 0.0031 6.6E-08 68.0 32.6 323 132-571 199-527 (823)
97 KOG0392 SNF2 family DNA-depend 98.3 0.0069 1.5E-07 70.2 36.9 176 585-785 753-929 (1549)
98 PF05804 KAP: Kinesin-associat 98.3 0.00051 1.1E-08 77.8 27.2 376 235-694 263-651 (708)
99 KOG0891 DNA-dependent protein 98.3 0.045 9.8E-07 70.1 47.3 455 393-898 485-953 (2341)
100 PF08389 Xpo1: Exportin 1-like 98.2 2.4E-06 5.2E-11 78.9 6.8 135 107-245 2-148 (148)
101 PF12717 Cnd1: non-SMC mitotic 98.2 5.6E-05 1.2E-09 71.6 15.1 133 144-291 1-139 (178)
102 KOG1077 Vesicle coat complex A 98.2 0.02 4.3E-07 62.4 37.3 409 10-525 9-450 (938)
103 PF13513 HEAT_EZ: HEAT-like re 98.1 4.1E-06 8.8E-11 61.6 5.2 55 677-735 1-55 (55)
104 KOG1078 Vesicle coat complex C 98.1 0.012 2.7E-07 64.9 33.2 126 367-509 408-533 (865)
105 KOG4653 Uncharacterized conser 98.1 0.00046 1E-08 76.3 22.0 231 479-736 727-963 (982)
106 PF12717 Cnd1: non-SMC mitotic 98.1 0.00037 8E-09 66.0 19.1 133 106-250 1-139 (178)
107 KOG1077 Vesicle coat complex A 98.1 0.028 6E-07 61.4 40.8 333 130-566 110-448 (938)
108 KOG0414 Chromosome condensatio 98.0 0.055 1.2E-06 63.0 49.1 105 99-212 318-431 (1251)
109 KOG2956 CLIP-associating prote 98.0 0.00039 8.4E-09 71.7 18.5 198 131-390 286-488 (516)
110 KOG1058 Vesicle coat complex C 98.0 0.034 7.5E-07 61.2 33.7 82 434-527 100-181 (948)
111 cd00020 ARM Armadillo/beta-cat 98.0 2E-05 4.3E-10 69.8 7.9 110 434-548 8-119 (120)
112 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.00045 9.8E-09 74.6 19.5 252 559-830 22-280 (435)
113 KOG2956 CLIP-associating prote 98.0 0.0012 2.5E-08 68.4 20.5 181 231-465 297-480 (516)
114 PF13646 HEAT_2: HEAT repeats; 98.0 0.0001 2.2E-09 60.8 10.7 85 392-504 2-88 (88)
115 PF05804 KAP: Kinesin-associat 97.9 0.0028 6.1E-08 72.0 24.8 340 394-783 255-609 (708)
116 COG5096 Vesicle coat complex, 97.9 0.076 1.6E-06 60.3 43.1 168 189-422 28-196 (757)
117 PF08506 Cse1: Cse1; InterPro 97.9 0.003 6.5E-08 66.8 22.8 216 194-457 110-370 (370)
118 PF05004 IFRD: Interferon-rela 97.9 0.0096 2.1E-07 61.6 26.1 210 270-530 51-283 (309)
119 KOG1820 Microtubule-associated 97.8 0.0034 7.3E-08 72.2 23.7 208 385-609 249-459 (815)
120 KOG2022 Nuclear transport rece 97.8 0.094 2E-06 59.1 46.2 384 109-553 440-871 (982)
121 PF05004 IFRD: Interferon-rela 97.8 0.0063 1.4E-07 62.9 22.4 213 477-694 41-259 (309)
122 KOG4413 26S proteasome regulat 97.8 0.02 4.2E-07 56.5 23.9 177 113-293 63-245 (524)
123 PF14500 MMS19_N: Dos2-interac 97.8 0.0072 1.6E-07 60.6 22.1 250 135-439 3-256 (262)
124 KOG2032 Uncharacterized conser 97.7 0.094 2E-06 55.2 32.0 266 218-548 255-530 (533)
125 KOG0168 Putative ubiquitin fus 97.7 0.065 1.4E-06 60.0 29.2 157 430-596 208-366 (1051)
126 PF13646 HEAT_2: HEAT repeats; 97.7 0.00026 5.6E-09 58.3 9.0 86 435-545 1-88 (88)
127 TIGR02270 conserved hypothetic 97.7 0.014 3.1E-07 62.6 24.1 242 93-462 54-296 (410)
128 KOG0891 DNA-dependent protein 97.7 0.42 9.1E-06 61.8 52.9 171 648-824 550-720 (2341)
129 KOG0168 Putative ubiquitin fus 97.7 0.039 8.5E-07 61.6 26.8 384 260-714 209-653 (1051)
130 KOG4653 Uncharacterized conser 97.6 0.0065 1.4E-07 67.7 20.8 218 63-289 739-962 (982)
131 TIGR02270 conserved hypothetic 97.6 0.016 3.5E-07 62.1 23.5 243 130-508 53-296 (410)
132 PF04826 Arm_2: Armadillo-like 97.6 0.0019 4.1E-08 64.2 15.1 192 391-599 14-210 (254)
133 PF05918 API5: Apoptosis inhib 97.6 0.014 3E-07 64.0 22.8 159 97-273 27-189 (556)
134 KOG1525 Sister chromatid cohes 97.6 0.35 7.6E-06 58.8 44.2 341 93-509 48-406 (1266)
135 PF14500 MMS19_N: Dos2-interac 97.6 0.023 5E-07 57.0 22.4 250 438-712 4-258 (262)
136 PF05918 API5: Apoptosis inhib 97.6 0.18 3.9E-06 55.5 30.4 153 62-232 33-189 (556)
137 KOG0413 Uncharacterized conser 97.5 0.28 6E-06 55.9 40.7 148 677-842 945-1093(1529)
138 COG1413 FOG: HEAT repeat [Ener 97.5 0.022 4.9E-07 60.7 23.3 110 366-508 195-304 (335)
139 KOG2933 Uncharacterized conser 97.5 0.0026 5.5E-08 62.4 13.9 147 391-551 90-236 (334)
140 COG1413 FOG: HEAT repeat [Ener 97.5 0.083 1.8E-06 56.4 27.4 185 48-289 43-240 (335)
141 KOG2021 Nuclear mRNA export fa 97.5 0.29 6.2E-06 54.3 57.5 113 725-842 663-791 (980)
142 PF04826 Arm_2: Armadillo-like 97.5 0.0016 3.4E-08 64.7 12.3 190 435-654 14-210 (254)
143 KOG4413 26S proteasome regulat 97.5 0.039 8.5E-07 54.5 21.2 257 451-739 61-335 (524)
144 PF08767 CRM1_C: CRM1 C termin 97.4 0.11 2.3E-06 54.3 26.3 212 583-864 90-316 (319)
145 PLN03076 ARF guanine nucleotid 97.4 0.2 4.4E-06 63.4 32.1 339 181-574 1138-1513(1780)
146 KOG1293 Proteins containing ar 97.4 0.25 5.5E-06 54.1 28.5 138 406-549 391-533 (678)
147 PF10274 ParcG: Parkin co-regu 97.4 0.0017 3.7E-08 59.7 10.7 95 477-574 36-134 (183)
148 PF02985 HEAT: HEAT repeat; I 97.4 0.0002 4.4E-09 44.8 3.2 30 434-463 1-30 (31)
149 PF08569 Mo25: Mo25-like; Int 97.3 0.2 4.4E-06 52.1 25.8 188 96-295 79-287 (335)
150 PLN03076 ARF guanine nucleotid 97.3 0.12 2.6E-06 65.3 28.2 331 126-490 1132-1513(1780)
151 KOG1820 Microtubule-associated 97.3 0.017 3.8E-07 66.5 19.2 204 131-393 253-456 (815)
152 PF08167 RIX1: rRNA processing 97.2 0.007 1.5E-07 56.2 13.1 139 386-529 22-164 (165)
153 KOG2160 Armadillo/beta-catenin 97.2 0.053 1.1E-06 55.1 20.0 188 633-826 96-285 (342)
154 KOG0413 Uncharacterized conser 97.2 0.62 1.3E-05 53.2 36.2 180 104-289 483-683 (1529)
155 PF10274 ParcG: Parkin co-regu 97.2 0.0035 7.5E-08 57.6 10.4 92 663-758 38-133 (183)
156 KOG1851 Uncharacterized conser 97.2 1 2.2E-05 54.7 34.5 151 721-879 1540-1692(1710)
157 PF13001 Ecm29: Proteasome sta 97.1 0.54 1.2E-05 52.7 29.1 82 17-104 25-113 (501)
158 PF11865 DUF3385: Domain of un 97.1 0.0072 1.6E-07 55.6 11.9 148 387-550 8-158 (160)
159 PF08167 RIX1: rRNA processing 97.1 0.03 6.4E-07 52.1 15.4 130 664-801 26-163 (165)
160 KOG2062 26S proteasome regulat 97.0 0.023 4.9E-07 62.4 15.7 169 40-236 511-680 (929)
161 KOG1293 Proteins containing ar 97.0 0.81 1.8E-05 50.3 33.0 430 63-553 21-494 (678)
162 KOG4524 Uncharacterized conser 97.0 1.2 2.5E-05 51.5 45.6 287 411-714 567-899 (1014)
163 COG5098 Chromosome condensatio 96.9 0.93 2E-05 49.9 27.1 130 369-508 280-415 (1128)
164 PF13251 DUF4042: Domain of un 96.9 0.012 2.6E-07 54.8 10.8 145 407-551 1-176 (182)
165 KOG2025 Chromosome condensatio 96.8 0.22 4.8E-06 54.9 21.3 111 87-209 79-193 (892)
166 cd00256 VATPase_H VATPase_H, r 96.8 1 2.2E-05 48.5 26.9 357 371-782 55-426 (429)
167 KOG2081 Nuclear transport regu 96.8 1.1 2.4E-05 48.5 30.3 184 634-838 366-552 (559)
168 COG5098 Chromosome condensatio 96.7 1.3 2.8E-05 48.9 53.4 108 96-212 302-418 (1128)
169 KOG1967 DNA repair/transcripti 96.7 1.7 3.6E-05 49.9 56.8 141 662-806 866-1008(1030)
170 cd00256 VATPase_H VATPase_H, r 96.7 1.2 2.5E-05 48.0 28.5 152 127-292 101-259 (429)
171 PF02985 HEAT: HEAT repeat; I 96.7 0.0035 7.6E-08 39.2 4.1 31 390-423 1-31 (31)
172 PF12054 DUF3535: Domain of un 96.7 0.51 1.1E-05 51.6 23.4 80 363-445 99-180 (441)
173 KOG2933 Uncharacterized conser 96.6 0.023 5.1E-07 56.0 11.3 135 363-511 100-237 (334)
174 PF12719 Cnd3: Nuclear condens 96.6 0.22 4.9E-06 51.7 19.2 165 416-596 7-183 (298)
175 PF11865 DUF3385: Domain of un 96.5 0.014 3.1E-07 53.7 9.0 150 656-823 3-157 (160)
176 KOG1410 Nuclear transport rece 96.5 1.8 3.9E-05 47.7 50.8 146 13-162 3-159 (1082)
177 KOG1967 DNA repair/transcripti 96.5 2.3 5E-05 48.9 59.1 139 700-845 863-1005(1030)
178 KOG0567 HEAT repeat-containing 96.5 0.2 4.3E-06 48.5 16.2 87 395-509 193-281 (289)
179 KOG1949 Uncharacterized conser 96.5 0.1 2.3E-06 57.0 15.9 204 81-292 113-332 (1005)
180 PF13251 DUF4042: Domain of un 96.4 0.053 1.2E-06 50.6 12.1 146 108-253 1-177 (182)
181 KOG1517 Guanine nucleotide bin 96.4 0.27 5.8E-06 56.6 19.2 101 406-510 571-673 (1387)
182 PF08064 UME: UME (NUC010) dom 96.3 0.079 1.7E-06 44.9 11.6 79 675-759 27-106 (107)
183 KOG4524 Uncharacterized conser 96.3 3.1 6.7E-05 48.2 50.2 164 670-837 810-988 (1014)
184 KOG0946 ER-Golgi vesicle-tethe 96.3 2.8 6.1E-05 47.3 31.4 161 368-532 40-220 (970)
185 KOG2549 Transcription initiati 96.2 0.46 1E-05 51.1 18.6 174 222-440 208-390 (576)
186 KOG2160 Armadillo/beta-catenin 96.2 1.5 3.3E-05 44.9 21.5 142 143-292 95-241 (342)
187 KOG1517 Guanine nucleotide bin 96.2 0.28 6.1E-06 56.5 17.7 140 367-509 573-733 (1387)
188 PF12719 Cnd3: Nuclear condens 96.1 0.93 2E-05 47.1 20.7 118 92-210 26-144 (298)
189 KOG1048 Neural adherens juncti 96.0 0.57 1.2E-05 52.8 19.2 134 702-844 516-667 (717)
190 KOG1243 Protein kinase [Genera 96.0 0.13 2.8E-06 56.8 13.8 190 259-510 327-517 (690)
191 KOG0803 Predicted E3 ubiquitin 95.9 0.78 1.7E-05 56.0 21.3 112 179-290 40-152 (1312)
192 KOG2137 Protein kinase [Signal 95.9 0.43 9.2E-06 53.2 17.6 158 600-785 343-500 (700)
193 PF08623 TIP120: TATA-binding 95.8 0.078 1.7E-06 48.5 9.7 96 427-530 3-116 (169)
194 KOG1949 Uncharacterized conser 95.8 4.1 8.9E-05 45.3 25.0 159 32-208 163-330 (1005)
195 smart00802 UME Domain in UVSB 95.8 0.19 4.1E-06 42.3 11.1 77 676-758 28-105 (107)
196 PF08064 UME: UME (NUC010) dom 95.8 0.22 4.7E-06 42.2 11.7 96 216-314 6-105 (107)
197 cd08050 TAF6 TATA Binding Prot 95.7 0.24 5.2E-06 52.2 14.4 164 213-421 174-340 (343)
198 KOG2137 Protein kinase [Signal 95.5 2 4.4E-05 48.1 20.8 249 15-289 239-494 (700)
199 PF10521 DUF2454: Protein of u 95.4 0.5 1.1E-05 48.5 15.3 168 406-575 89-277 (282)
200 KOG2759 Vacuolar H+-ATPase V1 95.4 4 8.7E-05 42.7 20.9 71 433-509 366-439 (442)
201 COG5218 YCG1 Chromosome conden 95.3 5.6 0.00012 43.3 40.6 170 106-285 24-193 (885)
202 PF01603 B56: Protein phosphat 95.2 1.6 3.5E-05 47.5 19.2 229 15-258 133-378 (409)
203 PF10521 DUF2454: Protein of u 95.2 0.31 6.8E-06 50.0 13.1 146 472-617 112-276 (282)
204 KOG2149 Uncharacterized conser 95.1 0.47 1E-05 49.2 13.4 111 182-292 60-171 (393)
205 PF11864 DUF3384: Domain of un 95.1 7.3 0.00016 43.4 34.8 288 108-461 5-329 (464)
206 COG5116 RPN2 26S proteasome re 95.0 0.52 1.1E-05 50.5 13.8 123 94-235 552-676 (926)
207 KOG1243 Protein kinase [Genera 95.0 0.39 8.5E-06 53.3 13.2 253 231-551 264-517 (690)
208 PF12231 Rif1_N: Rap1-interact 94.9 6.6 0.00014 42.2 30.9 317 367-736 9-351 (372)
209 KOG2759 Vacuolar H+-ATPase V1 94.8 6.2 0.00013 41.4 26.3 299 97-462 118-438 (442)
210 KOG1837 Uncharacterized conser 94.8 14 0.00031 45.5 32.4 185 682-873 1414-1619(1621)
211 PF04118 Dopey_N: Dopey, N-ter 94.7 1.9 4.1E-05 44.3 16.9 143 132-288 55-198 (307)
212 smart00802 UME Domain in UVSB 94.7 0.66 1.4E-05 39.0 11.1 96 215-313 5-104 (107)
213 PF01603 B56: Protein phosphat 94.7 8.2 0.00018 42.1 24.4 256 192-508 102-370 (409)
214 KOG0889 Histone acetyltransfer 94.6 25 0.00054 47.4 50.4 291 390-735 985-1304(3550)
215 PF10363 DUF2435: Protein of u 94.5 0.36 7.8E-06 39.4 8.9 76 180-256 3-78 (92)
216 PF03224 V-ATPase_H_N: V-ATPas 94.5 2.5 5.4E-05 44.4 17.8 181 668-858 110-308 (312)
217 PF08623 TIP120: TATA-binding 94.4 0.11 2.3E-06 47.6 6.3 74 365-442 41-115 (169)
218 PF13001 Ecm29: Proteasome sta 94.4 2.4 5.2E-05 47.6 18.4 224 47-289 234-486 (501)
219 PF01347 Vitellogenin_N: Lipop 94.4 2.4 5.1E-05 49.7 19.4 131 367-531 451-603 (618)
220 PF04510 DUF577: Family of unk 94.3 2.8 6E-05 38.2 14.7 146 93-250 3-164 (174)
221 PF10363 DUF2435: Protein of u 94.3 0.31 6.8E-06 39.7 8.1 73 434-512 4-76 (92)
222 KOG4500 Rho/Rac GTPase guanine 94.2 8.5 0.00018 40.4 24.9 124 652-780 303-430 (604)
223 COG5116 RPN2 26S proteasome re 94.1 0.68 1.5E-05 49.7 12.1 111 406-535 566-677 (926)
224 KOG1048 Neural adherens juncti 94.0 14 0.00031 42.2 24.3 77 661-739 564-643 (717)
225 smart00638 LPD_N Lipoprotein N 94.0 2.9 6.2E-05 48.4 18.7 117 366-504 412-541 (574)
226 KOG0889 Histone acetyltransfer 93.9 34 0.00075 46.3 50.4 91 177-269 46-145 (3550)
227 KOG1851 Uncharacterized conser 93.8 23 0.00049 43.9 34.3 176 368-554 1504-1683(1710)
228 PF14664 RICTOR_N: Rapamycin-i 93.7 12 0.00025 40.1 26.1 238 126-421 20-269 (371)
229 PF12530 DUF3730: Protein of u 93.6 8.4 0.00018 38.3 21.0 185 32-234 17-216 (234)
230 PF08569 Mo25: Mo25-like; Int 93.6 11 0.00024 39.5 20.7 184 62-251 87-284 (335)
231 COG5095 TAF6 Transcription ini 93.3 2.6 5.7E-05 41.6 13.6 150 427-595 195-360 (450)
232 KOG2149 Uncharacterized conser 93.3 2.1 4.6E-05 44.5 13.8 128 397-531 66-193 (393)
233 COG5095 TAF6 Transcription ini 93.2 2.1 4.5E-05 42.3 12.7 141 367-518 214-370 (450)
234 KOG4500 Rho/Rac GTPase guanine 93.0 14 0.00029 39.0 27.4 111 388-507 314-430 (604)
235 KOG3961 Uncharacterized conser 93.0 0.29 6.3E-06 45.4 6.4 96 477-575 112-210 (262)
236 cd08050 TAF6 TATA Binding Prot 92.7 2.6 5.6E-05 44.6 14.1 122 437-574 182-320 (343)
237 KOG2549 Transcription initiati 92.7 3.3 7.2E-05 44.9 14.6 155 367-532 223-395 (576)
238 KOG2025 Chromosome condensatio 92.6 21 0.00046 40.2 40.2 129 149-287 60-189 (892)
239 PF11919 DUF3437: Domain of un 92.5 0.19 4.1E-06 40.6 4.1 76 810-887 5-80 (90)
240 KOG0946 ER-Golgi vesicle-tethe 92.4 24 0.00052 40.3 45.9 210 49-292 23-242 (970)
241 PF08389 Xpo1: Exportin 1-like 92.3 1.2 2.6E-05 40.7 9.9 124 367-503 4-148 (148)
242 PF12830 Nipped-B_C: Sister ch 92.1 3.9 8.4E-05 39.0 13.2 126 178-309 6-138 (187)
243 PF01347 Vitellogenin_N: Lipop 92.0 13 0.00028 43.7 20.4 120 105-247 447-586 (618)
244 PF00514 Arm: Armadillo/beta-c 91.9 0.26 5.5E-06 33.2 3.7 28 434-461 13-40 (41)
245 COG5218 YCG1 Chromosome conden 91.8 24 0.00051 38.8 39.8 241 13-285 9-260 (885)
246 PF07571 DUF1546: Protein of u 91.8 0.76 1.7E-05 37.6 6.9 59 363-422 18-79 (92)
247 PF03224 V-ATPase_H_N: V-ATPas 91.7 7.8 0.00017 40.6 16.4 202 367-582 73-301 (312)
248 KOG2122 Beta-catenin-binding p 90.9 40 0.00086 41.7 21.5 70 434-509 531-602 (2195)
249 PF12231 Rif1_N: Rap1-interact 90.7 27 0.00058 37.6 30.7 169 406-574 148-329 (372)
250 KOG1789 Endocytosis protein RM 90.4 44 0.00096 39.6 22.1 92 195-292 1740-1842(2235)
251 PF12830 Nipped-B_C: Sister ch 90.3 12 0.00027 35.6 14.8 75 131-217 8-82 (187)
252 PF00514 Arm: Armadillo/beta-c 90.3 0.6 1.3E-05 31.4 4.3 29 479-507 12-40 (41)
253 PF12054 DUF3535: Domain of un 90.1 34 0.00073 37.7 23.1 96 107-209 101-208 (441)
254 PF11864 DUF3384: Domain of un 89.9 37 0.0008 37.9 33.9 285 367-677 6-315 (464)
255 PF05536 Neurochondrin: Neuroc 89.6 43 0.00092 38.1 38.2 137 146-292 72-214 (543)
256 PF09324 DUF1981: Domain of un 89.6 2.4 5.2E-05 34.2 7.9 66 222-287 18-84 (86)
257 PF11698 V-ATPase_H_C: V-ATPas 89.6 1.6 3.6E-05 37.2 7.1 70 131-209 43-115 (119)
258 cd03561 VHS VHS domain family; 89.4 7.6 0.00016 34.5 11.8 77 663-741 37-116 (133)
259 KOG0567 HEAT repeat-containing 88.9 25 0.00055 34.6 21.4 104 406-544 170-275 (289)
260 KOG1222 Kinesin associated pro 88.8 37 0.00079 36.4 19.9 119 407-532 278-398 (791)
261 KOG3961 Uncharacterized conser 88.7 1.2 2.6E-05 41.6 6.1 88 664-755 115-205 (262)
262 KOG2122 Beta-catenin-binding p 88.3 77 0.0017 39.5 25.3 150 672-826 447-604 (2195)
263 cd03568 VHS_STAM VHS domain fa 88.2 8.4 0.00018 34.7 11.2 78 476-553 34-114 (144)
264 KOG2213 Apoptosis inhibitor 5/ 88.2 19 0.00041 37.5 14.6 69 447-530 38-106 (460)
265 PF11919 DUF3437: Domain of un 87.2 1.4 3E-05 35.7 5.0 57 406-463 3-59 (90)
266 cd03567 VHS_GGA VHS domain fam 87.1 18 0.00039 32.3 12.5 77 477-553 36-120 (139)
267 smart00638 LPD_N Lipoprotein N 86.5 70 0.0015 37.1 22.9 120 105-247 409-542 (574)
268 cd03569 VHS_Hrs_Vps27p VHS dom 85.9 13 0.00029 33.4 11.1 79 476-554 38-119 (142)
269 KOG4199 Uncharacterized conser 85.9 44 0.00096 34.2 30.4 310 126-506 103-442 (461)
270 PF11698 V-ATPase_H_C: V-ATPas 85.8 4.5 9.8E-05 34.6 7.6 69 434-508 44-115 (119)
271 cd03561 VHS VHS domain family; 85.7 11 0.00023 33.6 10.5 99 103-212 14-115 (133)
272 PF08713 DNA_alkylation: DNA a 85.7 11 0.00023 36.9 11.7 88 364-465 99-187 (213)
273 KOG1222 Kinesin associated pro 85.6 56 0.0012 35.1 28.8 156 513-693 501-664 (791)
274 PF00790 VHS: VHS domain; Int 85.5 27 0.00058 31.4 13.1 81 474-554 37-123 (140)
275 KOG1848 Uncharacterized conser 84.8 1.1E+02 0.0024 37.9 21.3 100 104-210 853-959 (1610)
276 PF04118 Dopey_N: Dopey, N-ter 84.7 29 0.00063 35.9 14.3 145 406-554 25-172 (307)
277 cd03568 VHS_STAM VHS domain fa 84.4 3.8 8.3E-05 36.9 7.0 79 128-212 34-113 (144)
278 PF04388 Hamartin: Hamartin pr 84.2 24 0.00053 41.1 15.1 82 633-715 81-163 (668)
279 cd03572 ENTH_epsin_related ENT 84.2 14 0.0003 32.0 9.9 89 644-735 22-117 (122)
280 KOG0803 Predicted E3 ubiquitin 84.1 1.3E+02 0.0027 37.9 24.5 231 477-716 39-288 (1312)
281 PF14631 FancD2: Fanconi anaem 84.1 24 0.00051 45.0 15.8 120 424-552 426-545 (1426)
282 KOG1822 Uncharacterized conser 83.7 1.5E+02 0.0031 38.3 49.4 239 478-738 875-1128(2067)
283 COG5657 CSE1 CAS/CSE protein i 83.7 99 0.0021 36.4 35.2 72 767-839 508-579 (947)
284 smart00288 VHS Domain present 82.7 18 0.0004 32.1 10.6 79 475-553 33-115 (133)
285 KOG0929 Guanine nucleotide exc 82.7 81 0.0017 39.8 18.8 233 46-292 1034-1299(1514)
286 PF08767 CRM1_C: CRM1 C termin 82.6 68 0.0015 33.7 25.4 122 387-508 115-244 (319)
287 PF12783 Sec7_N: Guanine nucle 82.2 19 0.00041 33.6 11.2 106 145-250 36-146 (168)
288 PF12333 Ipi1_N: Rix1 complex 82.2 6.1 0.00013 33.1 6.9 60 655-716 5-65 (102)
289 PF12074 DUF3554: Domain of un 81.9 75 0.0016 33.8 20.1 199 50-257 24-242 (339)
290 PF00790 VHS: VHS domain; Int 81.8 34 0.00073 30.8 12.1 76 663-740 42-121 (140)
291 PF12765 Cohesin_HEAT: HEAT re 81.7 2.3 5E-05 28.7 3.4 26 179-204 17-42 (42)
292 cd03567 VHS_GGA VHS domain fam 81.6 16 0.00034 32.7 9.7 101 101-212 13-119 (139)
293 PF12333 Ipi1_N: Rix1 complex 81.6 4.8 0.0001 33.8 6.1 62 253-316 2-64 (102)
294 smart00288 VHS Domain present 81.6 32 0.00068 30.6 11.7 76 663-740 37-114 (133)
295 PF04388 Hamartin: Hamartin pr 81.1 53 0.0012 38.4 16.3 91 179-271 69-161 (668)
296 PF08713 DNA_alkylation: DNA a 80.6 26 0.00057 34.2 12.2 141 96-262 54-196 (213)
297 PF03542 Tuberin: Tuberin; In 80.6 82 0.0018 33.4 16.5 117 194-315 211-329 (356)
298 PF08161 NUC173: NUC173 domain 80.3 41 0.0009 32.3 12.7 56 639-696 19-74 (198)
299 PF04510 DUF577: Family of unk 80.2 48 0.001 30.5 13.9 37 681-717 60-97 (174)
300 cd03569 VHS_Hrs_Vps27p VHS dom 79.8 6.8 0.00015 35.2 6.8 99 103-212 18-117 (142)
301 KOG2005 26S proteasome regulat 79.8 97 0.0021 35.0 16.3 286 388-736 414-703 (878)
302 PF07571 DUF1546: Protein of u 79.7 6.8 0.00015 32.1 6.2 59 406-464 20-80 (92)
303 PF05536 Neurochondrin: Neuroc 79.6 1.2E+02 0.0026 34.6 40.9 183 367-554 73-266 (543)
304 KOG2973 Uncharacterized conser 79.5 34 0.00074 34.6 11.8 104 394-508 8-111 (353)
305 PF14664 RICTOR_N: Rapamycin-i 79.2 96 0.0021 33.3 19.2 220 23-253 33-272 (371)
306 PF09324 DUF1981: Domain of un 78.8 11 0.00024 30.4 7.1 68 179-246 16-84 (86)
307 PF11707 Npa1: Ribosome 60S bi 78.6 71 0.0015 33.8 15.2 175 108-292 41-238 (330)
308 PF12783 Sec7_N: Guanine nucle 78.5 42 0.00092 31.3 12.2 100 193-292 35-147 (168)
309 cd03572 ENTH_epsin_related ENT 77.9 41 0.0009 29.1 10.6 73 178-250 36-119 (122)
310 KOG2011 Sister chromatid cohes 77.9 1.7E+02 0.0038 35.5 19.5 113 409-529 262-378 (1048)
311 PF11701 UNC45-central: Myosin 77.8 6.3 0.00014 36.3 6.2 131 366-505 20-156 (157)
312 COG5231 VMA13 Vacuolar H+-ATPa 77.2 89 0.0019 31.8 17.3 71 434-508 357-428 (432)
313 PF11701 UNC45-central: Myosin 77.1 17 0.00038 33.4 8.9 140 98-247 8-156 (157)
314 PF12765 Cohesin_HEAT: HEAT re 76.7 4.1 8.9E-05 27.5 3.4 25 432-456 17-41 (42)
315 smart00185 ARM Armadillo/beta- 76.6 3.4 7.3E-05 27.4 3.1 28 434-461 13-40 (41)
316 KOG3687 Tuberin - Rap/ran-GTPa 76.0 1.8E+02 0.0038 34.7 32.8 39 674-712 484-522 (1697)
317 KOG1848 Uncharacterized conser 75.9 2.2E+02 0.0047 35.6 24.4 263 406-693 856-1133(1610)
318 PF12612 TFCD_C: Tubulin foldi 74.4 63 0.0014 30.9 12.4 134 406-549 21-158 (193)
319 KOG2973 Uncharacterized conser 73.6 1.1E+02 0.0024 31.2 20.4 102 96-209 6-111 (353)
320 PF14631 FancD2: Fanconi anaem 73.3 1.5E+02 0.0033 38.1 18.1 133 64-208 393-541 (1426)
321 PF11935 DUF3453: Domain of un 73.2 1E+02 0.0022 30.7 14.2 88 179-266 42-161 (239)
322 PF12397 U3snoRNP10: U3 small 73.1 19 0.00042 31.3 7.8 73 429-509 2-75 (121)
323 PF12530 DUF3730: Protein of u 73.0 1E+02 0.0022 30.6 21.9 168 104-291 12-189 (234)
324 COG5101 CRM1 Importin beta-rel 72.4 1.7E+02 0.0037 32.9 52.3 100 451-555 501-605 (1053)
325 smart00185 ARM Armadillo/beta- 71.9 7.3 0.00016 25.7 3.9 28 480-507 13-40 (41)
326 KOG3036 Protein involved in ce 71.2 73 0.0016 31.2 11.3 70 663-736 124-196 (293)
327 KOG1877 Putative transmembrane 70.8 1.3E+02 0.0028 35.3 15.3 84 140-231 65-150 (819)
328 KOG1525 Sister chromatid cohes 70.6 2.9E+02 0.0064 34.8 53.3 166 369-549 240-405 (1266)
329 cd03565 VHS_Tom1 VHS domain fa 69.8 76 0.0016 28.5 10.9 78 476-553 35-119 (141)
330 PF14668 RICTOR_V: Rapamycin-i 69.5 11 0.00023 29.2 4.6 55 408-464 3-60 (73)
331 cd00197 VHS_ENTH_ANTH VHS, ENT 69.5 49 0.0011 28.4 9.5 77 126-208 32-114 (115)
332 cd06561 AlkD_like A new struct 69.5 39 0.00084 32.5 9.9 66 392-465 108-173 (197)
333 KOG2213 Apoptosis inhibitor 5/ 68.8 1.6E+02 0.0035 31.1 22.8 139 107-289 38-178 (460)
334 cd06561 AlkD_like A new struct 68.8 1.1E+02 0.0024 29.2 13.2 76 436-521 108-183 (197)
335 PF12612 TFCD_C: Tubulin foldi 68.4 1.1E+02 0.0025 29.2 12.8 153 431-595 5-159 (193)
336 PF04078 Rcd1: Cell differenti 67.8 1.1E+02 0.0024 30.6 12.1 70 663-736 95-167 (262)
337 PF14868 DUF4487: Domain of un 67.1 2.3E+02 0.005 32.2 22.8 85 378-464 468-554 (559)
338 PF12397 U3snoRNP10: U3 small 66.8 37 0.0008 29.5 8.2 72 385-462 2-74 (121)
339 KOG1837 Uncharacterized conser 66.2 3.7E+02 0.008 34.3 32.4 80 477-556 1539-1618(1621)
340 PF12074 DUF3554: Domain of un 66.1 1.9E+02 0.004 30.8 20.1 96 476-575 19-115 (339)
341 PF03130 HEAT_PBS: PBS lyase H 64.8 8.5 0.00019 22.9 2.6 14 449-462 1-14 (27)
342 PF03542 Tuberin: Tuberin; In 64.5 2E+02 0.0043 30.6 15.7 92 448-549 212-303 (356)
343 cd00197 VHS_ENTH_ANTH VHS, ENT 64.3 74 0.0016 27.3 9.6 73 385-460 33-113 (115)
344 KOG1823 DRIM (Down-regulated i 64.1 3.8E+02 0.0083 33.7 33.8 373 429-823 560-961 (1364)
345 KOG1789 Endocytosis protein RM 63.5 3.4E+02 0.0074 32.9 23.1 137 146-292 1740-1884(2235)
346 PF11841 DUF3361: Domain of un 63.1 96 0.0021 28.4 10.0 127 11-138 10-147 (160)
347 KOG2199 Signal transducing ada 62.8 81 0.0017 33.1 10.4 96 406-511 26-121 (462)
348 PF12243 CTK3: CTD kinase subu 62.3 1.2E+02 0.0025 27.2 12.0 98 437-548 12-118 (139)
349 KOG2199 Signal transducing ada 59.6 1.1E+02 0.0025 32.0 10.8 78 385-465 41-121 (462)
350 cd03565 VHS_Tom1 VHS domain fa 59.2 1.4E+02 0.0029 26.9 11.5 76 664-740 39-118 (141)
351 COG5537 IRR1 Cohesin [Cell div 56.0 1.9E+02 0.0042 32.4 12.4 98 142-250 286-386 (740)
352 PF11707 Npa1: Ribosome 60S bi 55.9 2.7E+02 0.0059 29.4 22.5 111 182-292 58-189 (330)
353 KOG2011 Sister chromatid cohes 55.7 4.7E+02 0.01 32.1 18.8 133 141-288 297-432 (1048)
354 PF14668 RICTOR_V: Rapamycin-i 55.6 25 0.00054 27.2 4.3 54 725-782 4-59 (73)
355 PF08146 BP28CT: BP28CT (NUC21 54.5 1.7E+02 0.0037 26.8 10.4 37 583-619 85-121 (153)
356 PF01465 GRIP: GRIP domain; I 54.3 28 0.00062 24.1 4.1 36 89-124 3-38 (46)
357 PF14225 MOR2-PAG1_C: Cell mor 54.3 2.5E+02 0.0054 28.4 21.2 60 474-534 183-242 (262)
358 PF10350 DUF2428: Putative dea 54.2 2.5E+02 0.0053 28.4 13.2 162 364-531 60-251 (255)
359 PF04499 SAPS: SIT4 phosphatas 53.9 2.5E+02 0.0055 31.3 13.5 102 662-783 33-150 (475)
360 PF14961 BROMI: Broad-minded p 53.4 1.3E+02 0.0029 36.8 11.6 70 96-165 164-236 (1296)
361 KOG3678 SARM protein (with ste 52.3 2E+02 0.0043 31.0 11.4 100 674-780 233-335 (832)
362 KOG1822 Uncharacterized conser 52.3 6.8E+02 0.015 32.9 57.8 188 53-252 56-250 (2067)
363 KOG0929 Guanine nucleotide exc 52.3 6.1E+02 0.013 32.6 17.1 112 583-700 1192-1306(1514)
364 smart00567 EZ_HEAT E-Z type HE 52.1 20 0.00044 21.8 2.9 15 406-420 1-15 (30)
365 COG5537 IRR1 Cohesin [Cell div 51.0 4.1E+02 0.0089 30.0 18.7 145 229-428 283-429 (740)
366 PF08161 NUC173: NUC173 domain 50.7 2.4E+02 0.0051 27.1 14.8 63 492-554 13-75 (198)
367 KOG1087 Cytosolic sorting prot 50.0 1.1E+02 0.0025 33.6 9.8 77 477-553 36-116 (470)
368 PF07539 DRIM: Down-regulated 49.9 1.1E+02 0.0024 27.5 8.2 30 179-208 16-45 (141)
369 KOG1087 Cytosolic sorting prot 48.6 93 0.002 34.3 8.9 106 96-212 8-115 (470)
370 COG4912 Predicted DNA alkylati 48.4 79 0.0017 30.5 7.3 82 375-464 103-185 (222)
371 KOG2038 CAATT-binding transcri 46.6 5.4E+02 0.012 30.1 28.1 71 219-293 302-373 (988)
372 PF10193 Telomere_reg-2: Telom 45.6 1.1E+02 0.0023 26.4 7.2 82 181-262 4-91 (114)
373 cd07064 AlkD_like_1 A new stru 45.4 3E+02 0.0064 26.7 15.6 166 63-262 24-191 (208)
374 cd07064 AlkD_like_1 A new stru 45.2 3E+02 0.0065 26.7 17.3 160 32-219 28-189 (208)
375 smart00755 Grip golgin-97, Ran 43.7 46 0.00099 23.0 3.7 34 90-124 3-36 (46)
376 COG5110 RPN1 26S proteasome re 43.2 5.1E+02 0.011 28.9 34.0 310 388-760 412-725 (881)
377 KOG3682 Predicted membrane pro 42.2 5.9E+02 0.013 29.2 32.3 80 796-876 545-633 (930)
378 KOG2229 Protein required for a 41.6 4.2E+02 0.0091 29.3 12.0 127 687-824 3-130 (616)
379 PF07539 DRIM: Down-regulated 40.6 2.3E+02 0.0051 25.4 8.8 83 477-572 15-97 (141)
380 PF04078 Rcd1: Cell differenti 40.5 3.9E+02 0.0086 26.8 11.6 112 193-305 109-232 (262)
381 PF05327 RRN3: RNA polymerase 40.3 6.3E+02 0.014 29.1 18.3 57 474-530 341-403 (563)
382 COG5369 Uncharacterized conser 40.2 78 0.0017 34.7 6.6 135 409-549 406-545 (743)
383 KOG1877 Putative transmembrane 39.9 7.2E+02 0.016 29.6 21.4 162 406-574 31-204 (819)
384 PHA01351 putative minor struct 39.8 5.9E+02 0.013 29.2 13.1 13 880-892 327-341 (1070)
385 KOG0037 Ca2+-binding protein, 39.4 56 0.0012 31.2 4.9 42 854-901 115-167 (221)
386 KOG1926 Predicted regulator of 39.2 8.2E+02 0.018 30.1 29.4 75 62-140 84-158 (1129)
387 PF11841 DUF3361: Domain of un 39.0 3.1E+02 0.0068 25.2 12.7 99 147-254 33-135 (160)
388 smart00582 RPR domain present 38.0 1.7E+02 0.0037 25.3 7.7 99 98-209 5-107 (121)
389 PF13981 SopA: SopA-like centr 37.3 3E+02 0.0064 24.5 8.8 58 235-292 67-124 (135)
390 KOG3036 Protein involved in ce 37.1 4.3E+02 0.0093 26.2 12.3 108 192-300 137-256 (293)
391 PHA01351 putative minor struct 35.8 5.5E+02 0.012 29.4 12.1 29 589-617 212-240 (1070)
392 PF14868 DUF4487: Domain of un 35.1 7.4E+02 0.016 28.4 24.7 95 366-465 243-338 (559)
393 PF14961 BROMI: Broad-minded p 34.1 1E+03 0.022 29.8 15.6 133 131-272 161-315 (1296)
394 KOG3678 SARM protein (with ste 33.5 6.6E+02 0.014 27.3 17.0 155 38-208 170-335 (832)
395 PF06685 DUF1186: Protein of u 32.4 5.3E+02 0.011 25.9 14.1 44 223-266 113-161 (249)
396 smart00582 RPR domain present 31.9 3.3E+02 0.0072 23.4 9.7 61 438-512 5-65 (121)
397 cd03562 CID CID (CTD-Interacti 30.8 3.4E+02 0.0073 23.1 10.2 60 445-518 17-76 (114)
398 PF14225 MOR2-PAG1_C: Cell mor 29.8 6E+02 0.013 25.7 18.2 79 127-209 60-144 (262)
399 PF12726 SEN1_N: SEN1 N termin 29.3 1.1E+03 0.023 28.4 48.0 32 220-251 119-150 (727)
400 KOG3687 Tuberin - Rap/ran-GTPa 28.9 1.1E+03 0.024 28.6 36.6 77 444-528 441-522 (1697)
401 PF14228 MOR2-PAG1_mid: Cell m 28.8 1.3E+03 0.028 29.2 30.0 70 434-509 504-573 (1120)
402 PF14911 MMS22L_C: S-phase gen 28.8 7.5E+02 0.016 26.5 22.8 40 428-467 64-103 (373)
403 PF10193 Telomere_reg-2: Telom 28.6 2.3E+02 0.0049 24.4 6.6 67 722-791 19-89 (114)
404 PF06685 DUF1186: Protein of u 28.1 6.2E+02 0.014 25.4 14.5 42 708-751 115-159 (249)
405 PF08146 BP28CT: BP28CT (NUC21 28.1 4.7E+02 0.01 23.9 12.4 36 498-533 86-121 (153)
406 COG5231 VMA13 Vacuolar H+-ATPa 27.1 7.2E+02 0.016 25.8 21.5 26 666-691 402-427 (432)
407 KOG4199 Uncharacterized conser 26.8 7.5E+02 0.016 25.9 27.5 145 392-545 286-440 (461)
408 PF14222 MOR2-PAG1_N: Cell mor 26.2 1E+03 0.022 27.3 29.5 56 640-695 448-503 (552)
409 PF06025 DUF913: Domain of Unk 25.2 6.2E+02 0.013 27.3 10.6 120 664-785 107-236 (379)
410 PF13925 Katanin_con80: con80 24.3 2E+02 0.0044 26.6 5.9 52 114-165 47-103 (164)
411 COG4912 Predicted DNA alkylati 24.3 6.4E+02 0.014 24.6 9.1 75 126-213 113-187 (222)
412 PF09759 Atx10homo_assoc: Spin 23.9 2.6E+02 0.0056 23.5 5.8 56 409-465 3-62 (102)
413 COG1698 Uncharacterized protei 23.5 3.4E+02 0.0073 21.9 5.8 35 10-45 11-48 (93)
414 PF12422 Condensin2nSMC: Conde 23.4 5.7E+02 0.012 23.3 9.1 82 77-158 55-146 (152)
415 COG5209 RCD1 Uncharacterized p 23.4 3.2E+02 0.0068 26.5 6.8 70 663-736 145-217 (315)
416 COG5234 CIN1 Beta-tubulin fold 23.3 3.9E+02 0.0084 30.8 8.5 149 92-251 241-417 (993)
417 PF10025 DUF2267: Uncharacteri 22.6 1.9E+02 0.0041 25.3 5.2 54 831-884 69-123 (125)
418 PF06371 Drf_GBD: Diaphanous G 22.4 2.7E+02 0.0058 26.3 6.7 93 367-461 92-186 (187)
419 KOG3613 Dopey and related pred 22.3 3.2E+02 0.0068 35.2 8.4 77 194-270 1501-1580(1749)
420 COG5221 DOP1 Dopey and related 21.8 1.3E+03 0.029 28.4 12.5 94 149-250 81-175 (1618)
421 KOG3723 PH domain protein Melt 21.5 1.2E+03 0.026 26.3 19.6 59 776-840 186-245 (851)
422 KOG2005 26S proteasome regulat 21.2 1.3E+03 0.029 26.7 16.4 64 132-207 416-479 (878)
423 cd03562 CID CID (CTD-Interacti 21.1 5.2E+02 0.011 21.9 7.6 84 371-458 20-104 (114)
424 COG5369 Uncharacterized conser 21.1 2.9E+02 0.0062 30.7 6.8 133 369-508 407-545 (743)
425 PF06371 Drf_GBD: Diaphanous G 20.9 3.1E+02 0.0068 25.8 6.9 56 144-208 129-186 (187)
426 PF04869 Uso1_p115_head: Uso1 20.7 6E+02 0.013 26.5 9.1 161 383-548 29-225 (312)
427 KOG3723 PH domain protein Melt 20.6 1.2E+03 0.027 26.2 13.0 50 814-867 182-231 (851)
428 COG5234 CIN1 Beta-tubulin fold 20.6 1.4E+03 0.03 26.7 18.7 140 9-162 379-525 (993)
429 PF12463 DUF3689: Protein of u 20.6 5E+02 0.011 26.9 8.3 36 663-698 141-179 (303)
430 KOG2188 Predicted RNA-binding 20.3 9.1E+02 0.02 27.6 10.5 37 726-762 381-419 (650)
431 PF08620 RPAP1_C: RPAP1-like, 20.2 1.6E+02 0.0034 22.9 3.5 31 132-162 40-70 (73)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-140 Score=1073.03 Aligned_cols=871 Identities=55% Similarity=0.951 Sum_probs=826.3
Q ss_pred CCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 002596 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (902)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w 83 (902)
+|.|+|++++++|+.++|++++|||++ +|+.+...++++...|+|.+||++||...++.+..+|++||++|||.++.+|
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 579999999999999999999999999 9999999999999999999999999998888899999999999999999999
Q ss_pred ccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhch
Q 002596 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
..++++...++|..+++++.++++.||.+.+.++++|+...+...||+++|.|.+++.+++....++|+.+|.+|||+..
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002596 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (902)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~ 243 (902)
+.+++++. .++++.++|+++++++++++.+|..|+.|++.++-..++.+..+++.|++.+|.+.+|.+++||+.+|.
T Consensus 161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 98887654 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhh
Q 002596 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (902)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~ 323 (902)
+|+.+.+..++.+.||++.++++|++..++.|++|+.+|||||.++++.+.....+.||+++++|.++..|.|+++|+-.
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999988
Q ss_pred hh-hhccCCCCCCCCCCCcccccccCCCCC-------CCCC--CCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHH
Q 002596 324 VE-AEEDESLPDRDQDLKPRFHSSRLHGSE-------NPED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (902)
Q Consensus 324 ~~-~~~~~~~~~~~~~i~p~~~~~~~~~~~-------~~~~--dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (902)
.+ .++|+.++|++++|||+|++.+..|.. ++|| ||||...+|++|+|++.+|+.++..+|+++++.++|+
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 86 557789999999999999998765441 1121 3455667899999999999999999999999999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcc
Q 002596 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (902)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (902)
+.+.+.+++ |.+||++++++|+|+|||.+.+.+|++.++|++++.|+|..|.||+.+||+|+||+.|.... ..
T Consensus 398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~ 470 (885)
T KOG2023|consen 398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR 470 (885)
T ss_pred HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence 999999988 99999999999999999999999999999999999999999999999999999999998753 35
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 553 (902)
.+|+.+++..++..+-|.+++||++||+|++.+.+.+++.+.||+..|+..+..+++.++.+++..+++||+++++++|.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH--HhhcccccCCC
Q 002596 554 ELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQL--AKVDSVAAGAQ 631 (902)
Q Consensus 554 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~e 631 (902)
.+.+|.|++.+||+|+++|+...++|+++.+++||++.++.++|.+|.||++.++++++.+++...+ .+...+...+.
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999996533 23344455566
Q ss_pred CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHH
Q 002596 632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (902)
Q Consensus 632 ~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 711 (902)
||++++++++|+++++++++|+++++++.++.+..+++.|++|+.++|||++|.++|++++.|.+.+.|++..+++.+..
T Consensus 631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA 710 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 79999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcCh
Q 002596 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (902)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 791 (902)
++..+ +.++++||+||+|+++.+.+...++|+..++..|+-+++.+. .+..+.||.+.++||+++.+|+.++|++
T Consensus 711 Nl~~~----~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~~~tllENtAITIGrLg~~~Pe~vAp~l 785 (885)
T KOG2023|consen 711 NLNPE----NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-TPKTLLENTAITIGRLGYICPEEVAPHL 785 (885)
T ss_pred cCChh----hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-chHHHHHhhhhhhhhhhccCHHhcchhH
Confidence 99888 779999999999999999999999999999999999999876 3789999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhH
Q 002596 792 EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAW 871 (902)
Q Consensus 792 ~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 871 (902)
+.++.+||..+....|++||..||+|+|.+|..||.++...+..||++|++|.++. ++++.+++++++++|.++|+.+|
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~~l~~~f~kiL~g~k~qvg~~nW 864 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-DDLRDEFYKILQGFKNQVGKINW 864 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-HHHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999754 78999999999999999998899
Q ss_pred HHHHhcCCHHHHHHHhh-ccc
Q 002596 872 DQCMSALEPPVKDKLSK-YQV 891 (902)
Q Consensus 872 ~~~~~~l~~~~~~~l~~-y~~ 891 (902)
+++..+|||..+.+|.. ||+
T Consensus 865 ~~~~~qf~P~~~erl~a~y~v 885 (885)
T KOG2023|consen 865 QRFSEQFPPPLKERLQAFYGV 885 (885)
T ss_pred HHHhhcCChhHHHHHHHHhCC
Confidence 99999999999999965 985
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-83 Score=699.46 Aligned_cols=817 Identities=23% Similarity=0.337 Sum_probs=674.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHH
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i 94 (902)
+++.+++++++||||+ +|++||+.|+.....+.....|.+++.. +.++++||+|++++|+.+.++|+.++.+.++.|
T Consensus 4 ~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred hHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 5789999999999999 9999999999765544477888888875 789999999999999999999999999999999
Q ss_pred HHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCC
Q 002596 95 KSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (902)
Q Consensus 95 ~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (902)
|..++.++. ++.+.||++.|.+++.|++.+.++.||+++++|.++.+|+++..|+.|+.+|..+.+.++..+
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~------- 153 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL------- 153 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc-------
Confidence 999999776 679999999999999999999777999999999999999999999999999999998877654
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--hhhHHhHHHHHHHHHHh----hCCCCHHHHHHHHHHHHH
Q 002596 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLL----SNDPSAEVRKLVCAAFNL 247 (902)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~~l~~l~~~----~~~~~~~vr~~~~~~l~~ 247 (902)
.+++..+.+.+.+++++++..||..|+++++.++...+ .....++..++|.++.. ..+.+....+.++++|.+
T Consensus 154 -~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 -QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred -chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 24568999999999999987799999999999998875 45556666666655554 445667778999999999
Q ss_pred HHhhChhhhhhhHHHHHHHHHhhhcC--CCHHHHHHHHHHHHHhhcc-CCchhhHHhhhhhhHHHHHhhccCChhhhhhh
Q 002596 248 LIEVRPSFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (902)
Q Consensus 248 l~~~~~~~~~~~l~~i~~~~~~~~~~--~~~~v~~~al~~l~~l~~~-~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~ 324 (902)
+++..|+.+.+++.++++++++...+ -++.+|..|++|+..+++. +...+...++.+.+++.++..|+..++|.+|.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 99999999999999999999988654 5788999999999999988 22334455788999999999999877774443
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC-cchhhhhHHHHHHhhccCCC
Q 002596 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-DEILPTLMPVIQAKLSASGD 403 (902)
Q Consensus 325 ~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 403 (902)
++| +.|+||+ -+....|.+++++++..+| +.++|.+++.+..++++++
T Consensus 313 ~~d-------------------------~~ded~~-----~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~- 361 (1075)
T KOG2171|consen 313 NED-------------------------DLDEDDE-----ETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE- 361 (1075)
T ss_pred ccc-------------------------ccccccc-----cCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC-
Confidence 221 1111211 1356889999999999997 5889999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHH
Q 002596 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (902)
Q Consensus 404 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 483 (902)
|+.|+||+++|+.+++||.+.+...++++++.+++.++||||+||++||.++|+++..+.+. ....+.+.+.+.
T Consensus 362 --w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~a 435 (1075)
T KOG2171|consen 362 --WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPPA 435 (1075)
T ss_pred --HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999765 345566667778
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHh-cccchHhHHHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhh
Q 002596 484 LLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQ-HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVY 560 (902)
Q Consensus 484 l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~-~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~ 560 (902)
++..+.|+ +++|+.+|+.++.+|.+.+ ++.+.||++.+++ .+..++++....+++.+..+|++++.+.+.+|. ||
T Consensus 436 L~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~--pY 513 (1075)
T KOG2171|consen 436 LIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI--PY 513 (1075)
T ss_pred HHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH--hH
Confidence 88888875 6899999999999999998 7888999999999 455555566777888999999999999999998 99
Q ss_pred hhhhhHHHHHHHhcCCCCCc-ch-hhHHHHHHHHHHHhcc-ccccccHHHHHHHHHH-----------------------
Q 002596 561 LDILMPPLIAKWQQLPNSDK-DL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINI----------------------- 614 (902)
Q Consensus 561 ~~~ll~~l~~~l~~~~~~~~-~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~----------------------- 614 (902)
++.+||.|.+.+++..+++. .+ ...++|++.++.++|+ .|.|+..++++.+...
T Consensus 514 ~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 514 FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 99999999999998764443 33 6789999999998885 6666666555554433
Q ss_pred ---------------------HHHHHHH-hhcc------------------ccc--------------------------
Q 002596 615 ---------------------IQTQQLA-KVDS------------------VAA-------------------------- 628 (902)
Q Consensus 615 ---------------------l~~~~~~-~~~~------------------~~~-------------------------- 628 (902)
....... -.|+ +.+
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l 673 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL 673 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh
Confidence 1100000 0000 000
Q ss_pred --------------------------------------------------------------------CCCC--------
Q 002596 629 --------------------------------------------------------------------GAQY-------- 632 (902)
Q Consensus 629 --------------------------------------------------------------------~~e~-------- 632 (902)
..|+
T Consensus 674 k~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~v 753 (1075)
T KOG2171|consen 674 KEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEI 753 (1075)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 0011
Q ss_pred --------------------------------------------------------------chhHHHHHhhhHHHHHHH
Q 002596 633 --------------------------------------------------------------DKEFVVCCLDLLSGLAEG 650 (902)
Q Consensus 633 --------------------------------------------------------------d~~~~~~al~~l~~l~~~ 650 (902)
|..+...+.+++..+++.
T Consensus 754 l~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~ 833 (1075)
T KOG2171|consen 754 LESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKA 833 (1075)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 112333445666677777
Q ss_pred HhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHH
Q 002596 651 LGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACW 730 (902)
Q Consensus 651 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~ 730 (902)
.++.|.+.+.+ +.|.+...+....+--|+.|+.++++++.++++...+|.+.++|.+...+.+. +++||++|++
T Consensus 834 ~k~~f~p~f~~--~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~----~pEVRqaAsY 907 (1075)
T KOG2171|consen 834 LKGSFLPFFEN--FLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS----DPEVRQAAAY 907 (1075)
T ss_pred ccccccHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC----CHHHHHHHHH
Confidence 77777777775 77777776665544449999999999999999999999999999999999998 7899999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhh---hhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCC
Q 002596 731 AIGELAVKARQEISPIVMTVVLCLVPILKHSEEL---NKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (902)
Q Consensus 731 alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d 807 (902)
++|.++.++++.+.|.+...++.|..++..+... +...++|++++++|+.+++|..+ .++++++.|+++||..+|
T Consensus 908 GiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i--~vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 908 GMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRI--PVDQVLPAWLSWLPLKED 985 (1075)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccC--cHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999876543 56788999999999999999987 399999999999999999
Q ss_pred cHHHHHHHHHHHHHHHcCchhhhh----hHHHHhhHhhcc-cccCcHHHHHHHHHHHHHHHhhcC-hhhHHHHHhcCCHH
Q 002596 808 DTEKEDAFRGLCAMVKANPSGALS----SLVFMCRAIASW-HEIRSEELHNEVCQVLHGYKQMLR-NGAWDQCMSALEPP 881 (902)
Q Consensus 808 ~~e~~~~~~~l~~li~~~p~~~~~----~l~~i~~~i~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~ 881 (902)
.+|....|..||.+++.|++.+.. ++|.|+.+++.- .+. .-+.+....+++..+|+..+ .++|.+.++++|++
T Consensus 986 ~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~-~~~~~~~~~r~~~ilkq~~~~~~~~~~~~~~L~~~ 1064 (1075)
T KOG2171|consen 986 KEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADK-KIEPRSTLARVIEILKQFLAPPSQFAALLATLPPD 1064 (1075)
T ss_pred hhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhcc-CCCccchHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 999999999999999999988875 899999998652 111 00111223366777776653 37899999999999
Q ss_pred HHHHHhh-cc
Q 002596 882 VKDKLSK-YQ 890 (902)
Q Consensus 882 ~~~~l~~-y~ 890 (902)
.+++|++ |+
T Consensus 1065 ~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1065 QQQALQAVLN 1074 (1075)
T ss_pred HHHHHHHHhc
Confidence 9999976 64
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-63 Score=518.80 Aligned_cols=739 Identities=24% Similarity=0.374 Sum_probs=599.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHH-----------Hhh
Q 002596 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (902)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~--~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~~ 82 (902)
++.++|.+.+|||.. +|++|+++|++++. .|.|...|..+|.++ ..++..|..||+.|||.+ ..+
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~-~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAND-NSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-CCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 567889999999999 99999999999865 689999999999965 678999999999999998 357
Q ss_pred hccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCCh-hhhhHHHHHHHHHHh
Q 002596 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (902)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~ 160 (902)
|-.++.+.|+++|+.++..|+++.+..++.++++++.|+..+ |.+.||++++.+.....++.+ .++++++.+++.+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998 668999999999999988765 599999999999999
Q ss_pred hchhccccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCHH
Q 002596 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAE 236 (902)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~ 236 (902)
+..+... +...+.++..++++.+. ++..||.+|+++|...+++....+.+.. +-+++.++...+.++.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 9876421 23457888888888876 4789999999999998877543333322 23577788888889999
Q ss_pred HHHHHHHHHHHHHhhChhhhhhhHHH-HHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCc-----------------hhh
Q 002596 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (902)
Q Consensus 237 vr~~~~~~l~~l~~~~~~~~~~~l~~-i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~-----------------~~~ 298 (902)
++..++.||..+...+++++.+|+.+ ++...+..+.+.+++|+..++|||+++++.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 999999999999999999999999998776211 223
Q ss_pred HHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002596 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (902)
Q Consensus 299 ~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l 378 (902)
.+..++.++|.|+..|...++ ++|| ++|++.++|..||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqde-----------------------------------~~d~----DdWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQDE-----------------------------------DDDD----DDWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCCC-----------------------------------Cccc----ccCcHHHHHHHHHHHH
Confidence 334556788888877774321 1121 2499999999999999
Q ss_pred HhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChHHHHHHHHHH
Q 002596 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (902)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (902)
++..|++++|+++|++.+.+++++ |+.|++|.+++|++.+|.. +.+.+..++.+|.++....|++-.||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 9999999999999999865 556799999999999999999999999999999
Q ss_pred HhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---------ccchHhHHHHHHHHHHH
Q 002596 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---------EELAPRLEIILQHLMMA 528 (902)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---------~~~~p~l~~i~~~l~~~ 528 (902)
|+++++++... ....+...++..+++++.| +|+|...+||++.+|++.+. +...|+++.|+..|++.
T Consensus 431 grI~d~l~e~~---~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEAI---INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhhc---ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999998643 3567788999999999998 48999999999999998762 13457999999999988
Q ss_pred Hhccc---hhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhc------CCCCCcc----h-hhHHHHHHHHHH
Q 002596 529 FGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ------LPNSDKD----L-FPLLECFTSIAQ 594 (902)
Q Consensus 529 l~~~~---~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~------~~~~~~~----~-~~~l~~l~~i~~ 594 (902)
-+..+ ...+..++++++.+++...+... +.+..+...++.++.+ .+.+|+. + .-+..+++.|.+
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy--~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~r 584 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVY--PMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIR 584 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77633 33455899999999998776554 4444444444443332 1112222 2 346789999999
Q ss_pred HhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC
Q 002596 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD 674 (902)
Q Consensus 595 ~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 674 (902)
.+|+.+.++.+.++..++++++... ..-.-+.++-++++++..+|+.|..|++. +.|+|...+++
T Consensus 585 k~~~~~~~~~d~iM~lflri~~s~~-------------s~~v~e~a~laV~tl~~~Lg~~F~kym~~--f~pyL~~gL~n 649 (859)
T KOG1241|consen 585 KVGSDIREVSDQIMGLFLRIFESKR-------------SAVVHEEAFLAVSTLAESLGKGFAKYMPA--FKPYLLMGLSN 649 (859)
T ss_pred HccccchhHHHHHHHHHHHHHcCCc-------------cccchHHHHHHHHHHHHHHhHhHHHHHHH--HHHHHHHHhhc
Confidence 9999999999999999999988621 11223347788999999999999999986 99999999954
Q ss_pred -CChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 002596 675 -DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLC 753 (902)
Q Consensus 675 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~ 753 (902)
.+..|..++++++||+++.++..+.||.+.++..++++|+++..++ +||.....++|.||...+.+|.||++.++..
T Consensus 650 ~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR--~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~l 727 (859)
T KOG1241|consen 650 FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR--NVKPAILSVFGDIALAIGADFEPYLEMVMPL 727 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998866 8999999999999999999999999999987
Q ss_pred HHHhhcC---Ch-----hhhhhHHHHHHHHHHHHhhh-----cCCccCcChHHHHHHHHHhccCCCCcHHHH--HHHHHH
Q 002596 754 LVPILKH---SE-----ELNKSLIENSAITLGRLAWV-----CPELVSPHMEHFMQPWCIALSMIRDDTEKE--DAFRGL 818 (902)
Q Consensus 754 l~~~l~~---~~-----~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~--~~~~~l 818 (902)
+...-+- +. +....+|+++..+..-++.. .+..+.||++.++.-. ......++.+|+. .+...+
T Consensus 728 lq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi-~~I~~e~~~~~~~~~~a~GlI 806 (859)
T KOG1241|consen 728 LQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFI-DRIAAEPDVSEALHAAALGLI 806 (859)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHH-HHHhcCcccchHHHHHHHHHH
Confidence 7665421 10 12457888888776555542 3345667888777654 3443334443432 455666
Q ss_pred HHHHHcCchhh
Q 002596 819 CAMVKANPSGA 829 (902)
Q Consensus 819 ~~li~~~p~~~ 829 (902)
..+...+|..+
T Consensus 807 gDL~~~fg~~~ 817 (859)
T KOG1241|consen 807 GDLATMFGKGV 817 (859)
T ss_pred HHHHHHcccch
Confidence 67777777543
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.2e-53 Score=423.76 Aligned_cols=667 Identities=16% Similarity=0.227 Sum_probs=532.4
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHH-----------Hh
Q 002596 16 EICRLLEQ-QISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RT 81 (902)
Q Consensus 16 ~~~~~l~~-~~s~~~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~ 81 (902)
++.++.++ .+|||.+ .|..||++|.+++.. ..|...+.+.|.+. +..++.|..|++.|||.+ ..
T Consensus 5 ef~~l~~n~vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~-ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 5 EFRCLGKNHVLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCDL-NSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred HHHHHHhcccCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 55666666 4799999 999999999999863 45777788888854 678999999999999998 35
Q ss_pred hhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCCh-hhhhHHHHHHHHHH
Q 002596 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKIC 159 (902)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~ 159 (902)
+|-.+++|.|+++|...++.|.++.+.+-..+|++++.|++.+ +.+.||+++..+.....++.| ..+..++.+++.+|
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999998 678999999999999988765 67778999999999
Q ss_pred hhchhc-cccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhcccchhhHH--hHHHHHHHHHHhhCCCC
Q 002596 160 EDIPQV-LDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDPS 234 (902)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~ 234 (902)
+...++ +. ...+.++-.+..+..+ ++..+|.+|++||..-..+....+.. .-+-+++.++...+.++
T Consensus 163 es~~Pe~li--------~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 163 ESEAPEDLI--------QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred hccCHHHHH--------HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 976552 11 1124455555555443 47899999999998854443222211 11235777888888899
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhhHHH-HHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHh------------
Q 002596 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE------------ 301 (902)
Q Consensus 235 ~~vr~~~~~~l~~l~~~~~~~~~~~l~~-i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~------------ 301 (902)
.++...++.||..+...+++++.+|+.+ +..++.+.+++.+++++..+.+||+++++.+...+.-..
T Consensus 235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999999999999999999999999984 556677789999999999999999999887433332222
Q ss_pred ---hhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHH
Q 002596 302 ---FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (902)
Q Consensus 302 ---~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l 378 (902)
....++|.++..+....+| . ++ ++|++.++|..||..+
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed---------------------------------~--~~----DdWn~smaA~sCLqlf 355 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGED---------------------------------Y--YG----DDWNPSMAASSCLQLF 355 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---------------------------------c--cc----cccchhhhHHHHHHHH
Confidence 2345677777666643221 1 11 2599999999999999
Q ss_pred HhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhhccCCCChHHHHHHHHHH
Q 002596 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (902)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (902)
++..|+.++..++.++.+.+++++ |..|++|.+++|++.++..+. +.+++++.+|.+.....|+.-.|+.++.||+
T Consensus 356 aq~~gd~i~~pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~ 432 (858)
T COG5215 356 AQLKGDKIMRPVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCF 432 (858)
T ss_pred HHHhhhHhHHHHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHH
Confidence 999999999999999999999999 999999999999999987654 5689999999999999999999999999999
Q ss_pred HhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-------ccchHhHHHHHHHHHHHHh
Q 002596 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-------EELAPRLEIILQHLMMAFG 530 (902)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-------~~~~p~l~~i~~~l~~~l~ 530 (902)
|+++.+.+..++| ..++...+...+.++.| ++++...++|++.+++++.. ..+.++++.|+..|++.-+
T Consensus 433 g~iad~va~~i~p---~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~ 508 (858)
T COG5215 433 GAIADHVAMIISP---CGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE 508 (858)
T ss_pred HHHHHHHHHhcCc---cccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 9999999876543 45667788888888887 47888999999999998863 3357888889888887765
Q ss_pred ccc--hhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcC--------CCCCcc----h-hhHHHHHHHHHHH
Q 002596 531 KYQ--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDKD----L-FPLLECFTSIAQA 595 (902)
Q Consensus 531 ~~~--~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~--------~~~~~~----~-~~~l~~l~~i~~~ 595 (902)
... ...+..+++++++++....+... +.+..+......++... ..+|.. + ...+..+..|++.
T Consensus 509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~--~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 509 LALNESNLRVSLFSALGTLILICPDAVS--DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred hhccchhHHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 432 23455889999999987766554 44444443333333321 112221 2 4567788888888
Q ss_pred hccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC
Q 002596 596 LGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD 675 (902)
Q Consensus 596 ~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 675 (902)
.+..+.+-.++++..+++++++.. +. -.....+-+++.+..++++.|+.|++. +.|++.+.+...
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~-----~t--------~~~~dV~~aIsal~~sl~e~Fe~y~~~--fiPyl~~aln~~ 651 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTK-----PT--------TAFGDVYTAISALSTSLEERFEQYASK--FIPYLTRALNCT 651 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccC-----Cc--------hhhhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhcch
Confidence 899999999999999999888641 10 111224567899999999999999986 999999999888
Q ss_pred ChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 002596 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLV 755 (902)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~ 755 (902)
+.-+..++++++|++++.++..|.+|.+.++..+.++++++..++ ++|.....++|.|+...+.+|.+|++.++-.+.
T Consensus 652 d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R--~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 652 DRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHR--DLKPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcc--ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999987755 899999999999999999999999999885554
Q ss_pred Hh
Q 002596 756 PI 757 (902)
Q Consensus 756 ~~ 757 (902)
+.
T Consensus 730 qa 731 (858)
T COG5215 730 QA 731 (858)
T ss_pred HH
Confidence 43
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-43 Score=379.43 Aligned_cols=770 Identities=19% Similarity=0.279 Sum_probs=557.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhcc--------
Q 002596 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (902)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-------- 85 (902)
.+.+.+++.++.++|.+ .|+.||++|+++++.|+|...+++|..++ +.+..+||.|++.|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 36799999999999998 99999999999999999999999999875 788899999999999999999985
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
+.++.|..+|+.++..+...+..+|.....++-.|++.+.|+.||++++.+...+++++.....+|+.++..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5788999999999999998899999999999999999999999999999999999999999999999999999997764
Q ss_pred ccccCCCCCCCcchhhhHHHHHHH----hcCC---CHHHHHHHHHHHHHHhcc-cchhhH--HhHHHHHHHHHHhhCC--
Q 002596 165 VLDSDVPGLAECPINIFLPRLLQF----FQSP---HTSLRKLSLGSVNQFIML-MPSALF--VSMDQYLQGLFLLSND-- 232 (902)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~----l~~~---~~~vr~~al~~l~~~~~~-~~~~~~--~~~~~~l~~l~~~~~~-- 232 (902)
....+ +..+...+..++|.+++. +..+ +..+.+..++++..++.+ +|..+. +.+..+++.+...++-
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 32221 121223345555555444 4444 346677788888887744 565443 2344555555444321
Q ss_pred --------C-------CHHHHHHHHHHHHHHHhhChhh--------------hhhhHHHHHHHHHhhhc---C---CCHH
Q 002596 233 --------P-------SAEVRKLVCAAFNLLIEVRPSF--------------LEPHLRNLFEYMLQVNK---D---TDDD 277 (902)
Q Consensus 233 --------~-------~~~vr~~~~~~l~~l~~~~~~~--------------~~~~l~~i~~~~~~~~~---~---~~~~ 277 (902)
+ -...+++++..|..+.+.+.+. +.++...+.+..++.+. . -.++
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 1 1246788999998887654321 12233444444443321 1 3567
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhhHHHH-HhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCC
Q 002596 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (902)
Q Consensus 278 v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 356 (902)
+-..++.|+..++.....++.++|++..++... ++.|+++++|++.|++||. +|+|.+|.. .+
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~-------EYiR~~~Di--------~e- 383 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPY-------EYIRKKFDI--------FE- 383 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHH-------HHHHhcCch--------hc-
Confidence 888899999999888778999999999998755 5999999999999998876 466654422 11
Q ss_pred CCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc-----CCCCchHHHHHHHHHHHHHHhcchhh--hhh
Q 002596 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKG--LYP 429 (902)
Q Consensus 357 dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~ 429 (902)
+..+++.+|..++..++...|++.+|.+++++.+.+++ .+.++++.+++|++++|++++-..+. ++.
T Consensus 384 ------d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 384 ------DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred ------ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 13468899999999999999999999999999988872 22345999999999999999755432 233
Q ss_pred hHHH-HHHHHhhccCCCChHHHHHHHHHHHhhHH-HHhhhhcCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 002596 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (902)
Q Consensus 430 ~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l 506 (902)
.++. +++++++.++++...+|.+|||.+++|+. .+. ....+.+.+....++|. |++-.||..|+-||..|
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 4443 67889999999999999999999999994 332 56778899999999998 88899999999999999
Q ss_pred HHHhc---ccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH----hcCCCC-
Q 002596 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW----QQLPNS- 578 (902)
Q Consensus 507 ~~~~~---~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l----~~~~~~- 578 (902)
+.+.. ..+.|+++.+++.++.+.+..+.+.+. .++..++...++++. ||...++..|...+ +...++
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseEls--PfA~eL~q~La~~F~k~l~~~~~~~ 605 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELS--PFAVELCQNLAETFLKVLQTSEDED 605 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99884 458999999999999999887766665 445566677777776 78877777666544 321111
Q ss_pred ----Ccch--hhHHHHHHHHHHHhcc--ccccccHH-HHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHH
Q 002596 579 ----DKDL--FPLLECFTSIAQALGA--GFTQFAQP-VFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAE 649 (902)
Q Consensus 579 ----~~~~--~~~l~~l~~i~~~~g~--~f~~~~~~-i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~ 649 (902)
++.+ ..++.+++++...+.. ....++++ +++.+-.++.+.. .++.+.+++....+.-
T Consensus 606 ~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i--------------~dfyeE~~ei~~~~t~ 671 (1010)
T KOG1991|consen 606 ESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI--------------TDFYEELLEIVSSLTF 671 (1010)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHhhhhh
Confidence 2222 3455666666666654 23333333 3333333333321 1333334444433332
Q ss_pred HHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhH---HhHHHHHHHHHHhcCCCCCccchhHhh
Q 002596 650 GLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVSVAN 726 (902)
Q Consensus 650 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~v~~ 726 (902)
. .+++.|-+.+ +++++.+++++...+--....-++.+++....+.+. -|...++..+.+.+.+++..+ .-+.
T Consensus 672 ~-~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D--~d~~ 746 (1010)
T KOG1991|consen 672 L-SKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED--SDCE 746 (1010)
T ss_pred h-hcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch--HHHH
Confidence 2 2345555554 889999999888777777777778877777666554 255677788888888764322 4567
Q ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCc------ChHHHHHHHHH
Q 002596 727 NACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSP------HMEHFMQPWCI 800 (902)
Q Consensus 727 ~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------~l~~~l~~~~~ 800 (902)
.|+.-++.++..+++.+..|++..++..+..+.... .....+-.+...+.....++|..... +...+++.|+.
T Consensus 747 ~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~-e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~ 825 (1010)
T KOG1991|consen 747 SACKLLEVIILNCKGLLDQYIPLFLELALSRLTREV-ETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQ 825 (1010)
T ss_pred HHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHH
Confidence 789999999999988888888888888888777631 12445554544444444556654322 34557888888
Q ss_pred hccCCCCcHHHHHHHHHHHHHHHcC--chhhhhhHHHHhhHh
Q 002596 801 ALSMIRDDTEKEDAFRGLCAMVKAN--PSGALSSLVFMCRAI 840 (902)
Q Consensus 801 ~l~~~~d~~e~~~~~~~l~~li~~~--p~~~~~~l~~i~~~i 840 (902)
........+.|+.++-+++.++... |+...+.+.++..++
T Consensus 826 ~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~l 867 (1010)
T KOG1991|consen 826 FINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPAL 867 (1010)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 7776555778999999999999983 333334444555443
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-37 Score=339.94 Aligned_cols=675 Identities=20% Similarity=0.197 Sum_probs=511.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcC----chHHHHHHH
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIA----GWLELLQAL 136 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~----~w~~ll~~L 136 (902)
+.|.++|..|--.|. ..|.+-+ +...|...+. .+++.+|..+|-.+.+++.+.++. .-..+...|
T Consensus 15 spDn~vr~~Ae~~l~----~~~~~~~------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 15 SPDNEVRRQAEEALE----TLAKTEP------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred CCCchHHHHHHHHHH----Hhhcccc------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 567788999987664 3454322 4445555555 469999999998888888763221 112355556
Q ss_pred HHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhh
Q 002596 137 VTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL 215 (902)
Q Consensus 137 ~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~ 215 (902)
+.++.+. .+.+|+.-..+++.+++...+. .++++++.+++..+++++..|..|+.+|.++.+..+..+
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e-----------~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLPE-----------KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhcccc-----------chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 6666554 5689999999999988865442 358999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh--hhhhhhHHHHHHHHHh----hhcCCCHHHHHHHHHHHHHh
Q 002596 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNLFEYMLQ----VNKDTDDDVALEACEFWHSY 289 (902)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~l~~i~~~~~~----~~~~~~~~v~~~al~~l~~l 289 (902)
.++++.+++.+.+.++|++..+|..+.+++..++...+ ....+++..++|.++. ...+.|.+....+++.+..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 99999999999999999887799999999999887664 3344555555555554 45566777888999999999
Q ss_pred hccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHH
Q 002596 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (902)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~ 369 (902)
++. .++.++|++..++...+......+ .| -..|.
T Consensus 234 ~e~--~pk~l~~~l~~ii~~~l~Ia~n~~-----------------------------------l~---------~~~R~ 267 (1075)
T KOG2171|consen 234 LES--EPKLLRPHLSQIIQFSLEIAKNKE-----------------------------------LE---------NSIRH 267 (1075)
T ss_pred Hhh--chHHHHHHHHHHHHHHHHHhhccc-----------------------------------cc---------HHHHH
Confidence 988 788999999999998876554221 11 03799
Q ss_pred HHHHHHHHHHhhcC------cchhhhhHHHHHHhhccCC-CCchH------------HHHHHHHHHHHHHhcchhhhhhh
Q 002596 370 CSAAALDVLSNVFG------DEILPTLMPVIQAKLSASG-DEAWK------------DREAAVLALGAIAEGCIKGLYPH 430 (902)
Q Consensus 370 ~a~~~l~~l~~~~~------~~~~~~l~~~l~~~l~~~~-~~~~~------------~r~~a~~~l~~l~~~~~~~~~~~ 430 (902)
.|.+++..+++..+ ....+.+++.+..++.+.+ +++|. ....|..++..++-+.+. +..
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v 345 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQV 345 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhe
Confidence 99999999888743 1345566666666555321 11132 345677888888877653 346
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002596 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (902)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (902)
++.+++.+-..++++++.-|.+++.+++.+++.+.+. ....++++++.++..+.|++++||-+||.+++.+....
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~-----m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDV-----MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHH-----HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 7788999999999999999999999999999988765 66789999999999999999999999999999999999
Q ss_pred cccchHhHH-HHHHHHHHHHhccch-hhHHHHHHHHHHHHH-HhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHH
Q 002596 511 AEELAPRLE-IILQHLMMAFGKYQR-RNLRIVYDAIGTLAD-AVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLL 586 (902)
Q Consensus 511 ~~~~~p~l~-~i~~~l~~~l~~~~~-~~~~~~~~al~~l~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l 586 (902)
.+.+..+.. .+.+.|...+.+... ++...+..++-.+.+ ..++.+. ||++.+|...+..+.+.+ .+.+ ..++
T Consensus 421 ~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~--pYLd~lm~~~l~~L~~~~--~~~v~e~vv 496 (1075)
T KOG2171|consen 421 QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE--PYLDGLMEKKLLLLLQSS--KPYVQEQAV 496 (1075)
T ss_pred cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHhcCC--chhHHHHHH
Confidence 888876554 455578888877654 566666666555554 4555555 899999997777666532 3344 6889
Q ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHh-hhHHhhhccchHH
Q 002596 587 ECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG-SGIESLVAQSNLR 665 (902)
Q Consensus 587 ~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~-~~~~~~~~~~~l~ 665 (902)
.+++.++.+.+..|.||.+.++|.+.+++.+.. ++..+.++.+.+++++.+..+.| +.|.++..+ ++
T Consensus 497 taIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~----------~~d~r~LrgktmEcisli~~AVGke~F~~~a~e--li 564 (1075)
T KOG2171|consen 497 TAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD----------DKDLRELRGKTMECLSLIARAVGKEKFLPLAEE--LI 564 (1075)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC----------chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH--HH
Confidence 999999999999999999999999999988643 12256778889999999999999 457777765 78
Q ss_pred HHHHHH---hcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCc--------------c--------
Q 002596 666 DMLLQC---CMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK--------------E-------- 720 (902)
Q Consensus 666 ~~l~~~---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--------------~-------- 720 (902)
.+++.. ..+.+.-.++..+..++.+|+.+|++|.||++.+||.+++..+..... +
T Consensus 565 qll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~ 644 (1075)
T KOG2171|consen 565 QLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELG 644 (1075)
T ss_pred HHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccC
Confidence 877766 344556678899999999999999999999999999999876533110 0
Q ss_pred ----------chhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhh-------hc
Q 002596 721 ----------TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAW-------VC 783 (902)
Q Consensus 721 ----------~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~-------~~ 783 (902)
...-|..||.+||.++...+..|.||++++++..++.+.-- ++.++|..++.++..+.. .+
T Consensus 645 ~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~--fhdgVR~aa~~~~p~ll~~~~~A~~~~ 722 (1075)
T KOG2171|consen 645 DKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY--FHDGVRKAAAESMPQLLTCALKACQGG 722 (1075)
T ss_pred CceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 12446789999999999999999999999999666666543 489999999999887775 23
Q ss_pred CCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchh
Q 002596 784 PELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSG 828 (902)
Q Consensus 784 ~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~ 828 (902)
|..+.+....+.+..+..+..-.+.+.-...+++|...++..++.
T Consensus 723 p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~ 767 (1075)
T KOG2171|consen 723 PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN 767 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc
Confidence 433333344455566666665444444557888999998875533
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=4.4e-35 Score=311.89 Aligned_cols=741 Identities=19% Similarity=0.253 Sum_probs=525.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhcc---------
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--------- 85 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~--------- 85 (902)
+.+.++|.+++|+|++ +|.+|+.+|+++...++|..+|..+..+ ...+...||.|.+.||+.|.++|..
T Consensus 4 ~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~-~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAAN-KDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhC-cccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 4689999999999999 9999999999999999999999999885 3678899999999999999999985
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
.+.+.+..||+.++.++-+++..+|+.++.+++.|+..++|+.||++++.+.+++.+.+.+..++||++|..+..+...
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred ccccCCCCCCCcchhhhHHH---HHHHhcCCCHHHHHHHH--HHHHHHhcccch-------hhHHh----HHHHHHHHHH
Q 002596 165 VLDSDVPGLAECPINIFLPR---LLQFFQSPHTSLRKLSL--GSVNQFIMLMPS-------ALFVS----MDQYLQGLFL 228 (902)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~---l~~~l~~~~~~vr~~al--~~l~~~~~~~~~-------~~~~~----~~~~l~~l~~ 228 (902)
...... .+-.++. ++.+....+...|..+. +.+..+...+.. ..... ++.++..+-.
T Consensus 162 ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h 234 (1005)
T KOG2274|consen 162 EEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEH 234 (1005)
T ss_pred HHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211111 1222333 34444444444444443 455444432221 11112 2233333322
Q ss_pred hhC--C-CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhh----------------------cCCCH------H
Q 002596 229 LSN--D-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTDD------D 277 (902)
Q Consensus 229 ~~~--~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~----------------------~~~~~------~ 277 (902)
.++ + .+...|....+++..+.++.|..+.+++...++..++.. .+.++ .
T Consensus 235 ~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~ 314 (1005)
T KOG2274|consen 235 PLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVET 314 (1005)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHH
Confidence 222 2 234678899999999999999988888776666554331 01122 2
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 002596 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (902)
Q Consensus 278 v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~d 357 (902)
.....++|+..++......+.++..++.+++.+..+++.+++.++.|..|++..+ .+ +
T Consensus 315 l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV-------------------~d---E 372 (1005)
T KOG2274|consen 315 LVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV-------------------AD---E 372 (1005)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh-------------------cc---C
Confidence 3456788888887764445556667888899999999999999999976654211 01 1
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc-------CCCCchHHHHHHHHHHHHHHhcchhhhhhh
Q 002596 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-------SGDEAWKDREAAVLALGAIAEGCIKGLYPH 430 (902)
Q Consensus 358 d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 430 (902)
| + .++.|.+....+..+...+|...+..+....-+.+.. .+..||+..++.+.+.+....+ +.....
T Consensus 373 d-~---~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~ 446 (1005)
T KOG2274|consen 373 D-D---GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDK 446 (1005)
T ss_pred C-C---CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHH
Confidence 1 1 1457888888888888888875554444443332321 2234588888888877766633 222344
Q ss_pred HHHHHHHHhhccC-CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 002596 431 LSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 431 l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~ 508 (902)
+..++..+...+. +..|..-.+++|+++.|+.... ...+.+..++...+..+. |..+.++.+|+.++..++
T Consensus 447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~- 519 (1005)
T KOG2274|consen 447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC- 519 (1005)
T ss_pred HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-
Confidence 5555555555553 4667777799999999988654 245667777777777765 566788999988888776
Q ss_pred HhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHH
Q 002596 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLE 587 (902)
Q Consensus 509 ~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~ 587 (902)
..+.+.|++|.|++.|.++..+....++..++++++.+++.-.+... ..-..+.|..+..+.... +|+.+ ..+-+
T Consensus 520 -~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~lF~k~s-~DP~V~~~~qd 595 (1005)
T KOG2274|consen 520 -KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTINLFLKYS-EDPQVASLAQD 595 (1005)
T ss_pred -CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHHHHHHhc-CCchHHHHHHH
Confidence 35667899999999999999999999999999999988764333222 334567777777777665 66765 44555
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHH
Q 002596 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDM 667 (902)
Q Consensus 588 ~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~ 667 (902)
|+..+.. ......|+...++|.+++++...... .-..+...+++++..+++..++.+.+.+-. ..+|.
T Consensus 596 ~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~----------~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~Fpa 663 (1005)
T KOG2274|consen 596 LFEELLQ-IAANYGPMQERLIPSLISVLQLNADK----------APAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPA 663 (1005)
T ss_pred HHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccc----------cCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHH
Confidence 6655555 22356678888899998888753210 013455668899999999877765544432 36666
Q ss_pred HHHHh-cCCChHHHHHHHHHHHHHHhhchHhhHHh-------HHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHH----
Q 002596 668 LLQCC-MDDASDVRQSAFALLGDLARVCPVHLQAR-------LSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL---- 735 (902)
Q Consensus 668 l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-------~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l---- 735 (902)
+.+|. .+++.+..|.+-.++..++....+++..| +..+|..+.+.|+.. +...++..+|.+
T Consensus 664 Vak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~-------~sds~a~~VG~lV~tL 736 (1005)
T KOG2274|consen 664 VAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPE-------TSDSAAAFVGPLVLTL 736 (1005)
T ss_pred hHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCc-------cchhHHHHHhHHHHHH
Confidence 66664 45677788888888888888766666544 347888888777654 334444466655
Q ss_pred HHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCcc------------CcChHHHHHHHHHhcc
Q 002596 736 AVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV------------SPHMEHFMQPWCIALS 803 (902)
Q Consensus 736 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~~l~~~l~~~~~~l~ 803 (902)
+.+.+..+.|.+++|+++++..+.... ..++.++.+..++++....++.+ .|.+..++..|+++..
T Consensus 737 it~a~~el~~n~d~IL~Avisrmq~ae--~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqh 814 (1005)
T KOG2274|consen 737 ITHASSELGPNLDQILRAVISRLQQAE--TLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQH 814 (1005)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhh
Confidence 566778899999999999999988776 57899999999999996544332 2457789999999987
Q ss_pred CCCCcHHHHHHHHHHHHHHHc
Q 002596 804 MIRDDTEKEDAFRGLCAMVKA 824 (902)
Q Consensus 804 ~~~d~~e~~~~~~~l~~li~~ 824 (902)
......|++...+.+|.++++
T Consensus 815 l~~g~ye~kv~i~alc~al~~ 835 (1005)
T KOG2274|consen 815 LYFGEYEGKVSIKALCKALQH 835 (1005)
T ss_pred hhhhhhhchhhHHHHHHHHHh
Confidence 766677767777777777654
No 8
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-33 Score=297.36 Aligned_cols=656 Identities=18% Similarity=0.263 Sum_probs=462.1
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhcc------
Q 002596 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------ 85 (902)
Q Consensus 12 ~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~------ 85 (902)
.+++.+.+.|.+.++||.. +||.||..|++.+.+++|...+++++.+. +.++.+|..|++.+||.++++|..
T Consensus 2 ~~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~-~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVANG-QQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhcc-CcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 3578899999999999999 99999999999999999999999999853 679999999999999999999963
Q ss_pred -CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
+..+.++.||..++..+-+....+..+++.+++.|++.+.|+.||+|++.|...++++|-.+..+.+..-..+.+.+..
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 6778999999999999998889999999999999999999999999999999999999988888888888889998887
Q ss_pred ccccCCCCCC----------CcchhhhHHHHHHHhcC--CCHH-------HHHHHHHHHHHHh-cccchhhHHhHHHHHH
Q 002596 165 VLDSDVPGLA----------ECPINIFLPRLLQFFQS--PHTS-------LRKLSLGSVNQFI-MLMPSALFVSMDQYLQ 224 (902)
Q Consensus 165 ~~~~~~~~~~----------~~~~~~l~~~l~~~l~~--~~~~-------vr~~al~~l~~~~-~~~~~~~~~~~~~~l~ 224 (902)
.+.++ .++ ..++..++.......+. .+.. +....++.+.++. ..+|+.+.+++..+|.
T Consensus 160 efrSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 160 EFRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred ccccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 66543 111 11222233333333322 1221 2223333333432 3467888889999999
Q ss_pred HHHHhhC-------CCC------HHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCC-----CHHHHHHHHHHH
Q 002596 225 GLFLLSN-------DPS------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFW 286 (902)
Q Consensus 225 ~l~~~~~-------~~~------~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~-----~~~v~~~al~~l 286 (902)
.+.+.+. +++ .++|..+|+.+...+..+++.+.+++++++..++..+.+. -+.....|++|+
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 8888764 111 3578899999999999999999999999998888775432 345678899999
Q ss_pred HHhhccCCchhhH--HhhhhhhHHH-HHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccc
Q 002596 287 HSYFEAQLPHENL--KEFLPRLVPV-LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (902)
Q Consensus 287 ~~l~~~~~~~~~~--~~~l~~l~~~-ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~ 363 (902)
..+++.+.+.+.+ ...+..+... +++.+...++|+|.+|+++. +|+|. +.|..|-|
T Consensus 318 t~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pl-------eYiRR-----------DlEGsDvd--- 376 (960)
T KOG1992|consen 318 TSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPL-------EYIRR-----------DLEGSDVD--- 376 (960)
T ss_pred HHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHH-------HHHHH-----------hcccCCcc---
Confidence 9998874333222 2345555543 35778888888888876553 34442 12212222
Q ss_pred cccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc---CCCCchHHHHHHHHHHHHHHhcchh---------hhhhh-
Q 002596 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA---SGDEAWKDREAAVLALGAIAEGCIK---------GLYPH- 430 (902)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~- 430 (902)
+-|++|...+..++..+...+.+.+-..+...+.. ..+.||+.++.++..+.+++..... .+...
T Consensus 377 --TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 377 --TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred --hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 57999999999999999766766666666666651 1123399999999999988754211 11122
Q ss_pred ---HHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 431 ---LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 431 ---l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
...+.|.+.+.-..++|.+|..++.-+-.+-.. ..+.++...+|.+...+..++..|...|+.++..+.
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q--------l~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ--------LGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeeccc--------CChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 223444444433346889998886654433332 356788899999999999888999999999999887
Q ss_pred HHh---------cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCC-
Q 002596 508 EEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN- 577 (902)
Q Consensus 508 ~~~---------~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~- 577 (902)
... ...+.||...++..+++.++.+....-+.++.+|-.+....++... |+.+.+++.+.+.+.....
T Consensus 527 ~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~--p~~~~~l~~Lteiv~~v~KN 604 (960)
T KOG1992|consen 527 TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAII--PHAPELLRQLTEIVEEVSKN 604 (960)
T ss_pred ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhh--hhhhHHHHHHHHHHHHHhcC
Confidence 543 2457889999999999888877655555667777777777666665 7888888888777665432
Q ss_pred -CCcch-hhHHHHHHHHHHHhccc----cccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHH
Q 002596 578 -SDKDL-FPLLECFTSIAQALGAG----FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (902)
Q Consensus 578 -~~~~~-~~~l~~l~~i~~~~g~~----f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~ 651 (902)
+++.. ..++|.++.+....++. ...+-..++|.+..++.+.. .+++..++.+++.+++..
T Consensus 605 Ps~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--------------~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 605 PSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--------------QEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 23444 67889998888877652 34455666766666666533 145555666666666655
Q ss_pred hh----hHHhhhcc-------------chHHHHHHHHhcCCC---------hHH-------------HHHHHHHHHHHHh
Q 002596 652 GS----GIESLVAQ-------------SNLRDMLLQCCMDDA---------SDV-------------RQSAFALLGDLAR 692 (902)
Q Consensus 652 ~~----~~~~~~~~-------------~~l~~~l~~~~~~~~---------~~v-------------r~~a~~~l~~l~~ 692 (902)
+. .+.++++. |.+..++...++... ..+ -+.++.++..+..
T Consensus 671 ~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~ 750 (960)
T KOG1992|consen 671 SGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIE 750 (960)
T ss_pred CCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHh
Confidence 44 22222210 122222222221100 000 1347777888777
Q ss_pred hch-HhhHHhHHHHHHHHHHhcCCCCC
Q 002596 693 VCP-VHLQARLSDFLDIAAKQLNTPKL 718 (902)
Q Consensus 693 ~~~-~~~~~~~~~~l~~l~~~l~~~~~ 718 (902)
+.+ ..+.||+.+++-.+.+.+++++.
T Consensus 751 ~~~~~~~~py~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 751 SIPPNELAPYMKQIFGLLFQRLQNSKT 777 (960)
T ss_pred cCCHhhhhHHHHHHHHHHHHHHhccCc
Confidence 776 45689999999999999998864
No 9
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=288.19 Aligned_cols=807 Identities=15% Similarity=0.211 Sum_probs=508.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhcc-----CCHhHH
Q 002596 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (902)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-----l~~~~~ 91 (902)
+++.|+++.|+|.. ++|.||++|.+.+++|+|...|..|+.+ ++.+..+|-+|.+.+||.|.++|++ +++|.|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~-~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLS-KTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhc-cccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57899999999999 9999999999999999999999999885 4788999999999999999999985 899999
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC----ChhhhhHHHHHHHHHHhhchhccc
Q 002596 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLD 167 (902)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~----~~~~r~~al~~L~~l~~~~~~~~~ 167 (902)
..||..++..+.+++..+-.+.|.+++.||+.+.|..||++++.|.+.+++. |....+..+..|..+.+......-
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999988876 778888999999999888765311
Q ss_pred cCCCCCCCcchhhhHHHHHHHh----cCC------------C-------HHHHHHHHHHHHHHhcc---cch--hhHHhH
Q 002596 168 SDVPGLAECPINIFLPRLLQFF----QSP------------H-------TSLRKLSLGSVNQFIML---MPS--ALFVSM 219 (902)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l----~~~------------~-------~~vr~~al~~l~~~~~~---~~~--~~~~~~ 219 (902)
... .+.+..+.|.++..+ -++ + .++-..+++++..++.. .|. ++.+.+
T Consensus 160 ~a~----rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl 235 (978)
T KOG1993|consen 160 LAD----RKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERL 235 (978)
T ss_pred hhh----hHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHH
Confidence 111 112233333333321 111 1 12223455555555432 121 233444
Q ss_pred HHHHHH----HHHhhCCC----CHH----HHHHHHHHHHHHHhhChhhhhh--hHHHHHHHHHhhhcCC-----------
Q 002596 220 DQYLQG----LFLLSNDP----SAE----VRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDT----------- 274 (902)
Q Consensus 220 ~~~l~~----l~~~~~~~----~~~----vr~~~~~~l~~l~~~~~~~~~~--~l~~i~~~~~~~~~~~----------- 274 (902)
..+++. +...++.. ..+ ......+++..+.+..|-.+.. ..+..+++.+....+.
T Consensus 236 ~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~ 315 (978)
T KOG1993|consen 236 LQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHL 315 (978)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhccccccc
Confidence 444432 11222211 111 1222334445555555554443 3334444444332221
Q ss_pred --CHHHHHHHHHHHHHhhccC--C--------------c----hhh-----HHhhhhhhHHHHH-hhccCChhhhhhhhh
Q 002596 275 --DDDVALEACEFWHSYFEAQ--L--------------P----HEN-----LKEFLPRLVPVLL-SNMIYADDDESLVEA 326 (902)
Q Consensus 275 --~~~v~~~al~~l~~l~~~~--~--------------~----~~~-----~~~~l~~l~~~ll-~~l~~~~~d~~~~~~ 326 (902)
-++...+++..+..+.... . . .+. ..+-+..++..++ .++..+++|.+.|..
T Consensus 316 ~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~ 395 (978)
T KOG1993|consen 316 SSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQ 395 (978)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhc
Confidence 1233444444444321110 0 0 000 0122344555665 567788999999987
Q ss_pred hccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCC----
Q 002596 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG---- 402 (902)
Q Consensus 327 ~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~---- 402 (902)
||+. ...|+...+-.+++|-||...+..+...+++-++|.++..+.+..+...
T Consensus 396 dPE~-----------------------~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~ 452 (978)
T KOG1993|consen 396 DPEG-----------------------WVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVT 452 (978)
T ss_pred ChHH-----------------------hhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCcc
Confidence 7641 1111111112347999999999999999999889998888866554321
Q ss_pred -C-CchHHHHHHHHHHHHHHhcchhhh--hhhHHHHHHHHhhccC---CCChHHHHHHHHHHHhhHHHHhhhhcCCcchh
Q 002596 403 -D-EAWKDREAAVLALGAIAEGCIKGL--YPHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (902)
Q Consensus 403 -~-~~~~~r~~a~~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 475 (902)
+ +-.-.+.+.+.++|.-+....+.+ ...+ ...+++.+. +..-.+|++.+|.+|+....- ...+
T Consensus 453 ~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl---~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq-------~~~e 522 (978)
T KOG1993|consen 453 EDLTALLLKDAIYAAFGLAAYELSNILDFDKWL---QEALLPELANDHGNSRIIRRRVAWILGQWVSVQ-------QKLE 522 (978)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH---HHhhCHHhhhcccchhHHHHHHHHHHhhhhhee-------chHh
Confidence 0 013456666677776555443321 2222 223333332 233478999999999877621 1334
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---cccchHhHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHH
Q 002596 476 QFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADA 550 (902)
Q Consensus 476 ~~~~il~~l~~~l~d~-~~~v~~~a~~al~~l~~~~---~~~~~p~l~~i~~~l~~~l~~~~~-~~~~~~~~al~~l~~~ 550 (902)
....+...++..++|. +..|+.+++.++...++.. .+.+.||++.+...+.+++....+ +++..++..++.++..
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 4556777788888887 6888999999999999875 678999999999999999986654 5666889999999999
Q ss_pred hcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccC
Q 002596 551 VGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAG 629 (902)
Q Consensus 551 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 629 (902)
+++.+. ||...++..+-..|+... +++-+ .+++.++..++.++|..-.++.+-++|.+ +-.. |+..
T Consensus 603 ~~e~I~--P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI----el~~----D~~s-- 669 (978)
T KOG1993|consen 603 VSEHIA--PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI----ELST----DPSS-- 669 (978)
T ss_pred HHHhhh--HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH----HHhc----CCCC--
Confidence 999988 899999998888898765 33333 78899999999999985444434444432 2111 1111
Q ss_pred CCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHh-hHHhHHHHHHH
Q 002596 630 AQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLSDFLDI 708 (902)
Q Consensus 630 ~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~ 708 (902)
.+ .--+.+-++++++........-...++. ++|.+...++- ..+....++.++...+--.+.. +..|...++..
T Consensus 670 P~-hv~L~EDgmeLW~~~L~n~~~l~p~ll~---L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~ 744 (978)
T KOG1993|consen 670 PE-HVYLLEDGMELWLTTLMNSQKLTPELLL---LFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYAFGIFKK 744 (978)
T ss_pred Cc-eeehhhhHHHHHHHHHhcccccCHHHHH---HHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 00 1123445667777766554322222221 34444433322 2233344444444333322222 22344455555
Q ss_pred HHHhcCCCCCccchhHhhhHHHHHHHHH---Hhhhhhhhh-HHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcC
Q 002596 709 AAKQLNTPKLKETVSVANNACWAIGELA---VKARQEISP-IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (902)
Q Consensus 709 l~~~l~~~~~~~~~~v~~~a~~alg~l~---~~~~~~~~~-~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (902)
+...+.+ +|+....++-.+. ....+-+++ +...+++.+...+.... ..+-+.-.-...+||+...+|
T Consensus 745 ~~~~l~d--------vr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~-~yP~~~~~yl~vvaRi~l~n~ 815 (978)
T KOG1993|consen 745 LNDLLDD--------VRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAEND-KYPYVMGEYLLVVARISLRNP 815 (978)
T ss_pred HHHHHHH--------hhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCC-CCchhHHHHHHHHHHHHhcCh
Confidence 4444432 3333222222222 111111221 22334444433332221 135555556677899998888
Q ss_pred CccCc----------ChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhc------------
Q 002596 785 ELVSP----------HMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIAS------------ 842 (902)
Q Consensus 785 ~~~~~----------~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~------------ 842 (902)
+.+.. .+..++..|....+...+.+.|+.-.-++.+++..+.+-++..++.|++...+
T Consensus 816 ~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~eV~ed~~g~ 895 (978)
T KOG1993|consen 816 SLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSEVMEDANGD 895 (978)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHHHhhhccCc
Confidence 75432 24467899999999999888888899999999999776666666665554311
Q ss_pred ---cc------------ccC-----------------cHHHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHHhhc
Q 002596 843 ---WH------------EIR-----------------SEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLSKY 889 (902)
Q Consensus 843 ---~~------------~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~y 889 (902)
|+ +-+ .-.+++.+.+.+..+..++|++.++++++.+.|++...|+.|
T Consensus 896 ~~~~~~~d~~~e~~~~~d~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~f 974 (978)
T KOG1993|consen 896 ATDYHLNDDLSEQGVYEDETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMF 974 (978)
T ss_pred hHHHHhhhhhhccccCCchhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHH
Confidence 10 000 114678888999999999998789999999999999998763
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-34 Score=291.43 Aligned_cols=715 Identities=17% Similarity=0.196 Sum_probs=521.4
Q ss_pred hHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhh---hcCChHHHHHHHHHHHHHHhhcC
Q 002596 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL---GAADRHIRSTVGTIVSVVVQLGG 125 (902)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l---~~~~~~vr~~~a~~l~~i~~~~~ 125 (902)
...-++.+|.+..+.+.++|..+-..+.+.-. + ++. -+-|+-.| .+.+..+|..++-++.+=.+..+
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~----pdf----nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--F----PDF----NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--c----cch----hceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 45556777766557888999888766654321 1 111 12222222 34567778877776666555433
Q ss_pred cCchHHHH----HHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHH
Q 002596 126 IAGWLELL----QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (902)
Q Consensus 126 ~~~w~~ll----~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al 201 (902)
...=++.. ..+...+.+.++.+|...-.++..|+...+- ..+++++|.+.+.|.+++......|+
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-----------~~wpelLp~L~~~L~s~d~n~~EgA~ 149 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-----------QHWPELLPQLCELLDSPDYNTCEGAF 149 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-----------ccchhHHHHHHHHhcCCcccccchhH
Confidence 22222333 4455666677777776554444444432211 34589999999999999999999999
Q ss_pred HHHHHHhcccchhhH-----HhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCH
Q 002596 202 GSVNQFIMLMPSALF-----VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD 276 (902)
Q Consensus 202 ~~l~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 276 (902)
.+|..+.+..++.+. ..++.+++.+++...++++.+|..++.|+..++-..+..+..+++.+++.+.....|.++
T Consensus 150 ~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~ 229 (885)
T KOG2023|consen 150 GALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDP 229 (885)
T ss_pred HHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCH
Confidence 999999887654433 345677899999999999999999999999999888888889999999999999899999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCC
Q 002596 277 DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (902)
Q Consensus 277 ~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~ 356 (902)
+||...|..+.-+.+. ....+.|+++.++.-+++..+..+++.
T Consensus 230 eVRk~vC~alv~Llev--r~dkl~phl~~IveyML~~tqd~dE~V----------------------------------- 272 (885)
T KOG2023|consen 230 EVRKNVCRALVFLLEV--RPDKLVPHLDNIVEYMLQRTQDVDENV----------------------------------- 272 (885)
T ss_pred HHHHHHHHHHHHHHHh--cHHhcccchHHHHHHHHHHccCcchhH-----------------------------------
Confidence 9999999888888877 667788999999998887776554332
Q ss_pred CCccccccccHHHHHHHHHHHHHhhc-Cc----chhhhhHHHHHHhh----------cc-CC------------------
Q 002596 357 DDDDIVNVWNLRKCSAAALDVLSNVF-GD----EILPTLMPVIQAKL----------SA-SG------------------ 402 (902)
Q Consensus 357 dd~d~~~~~~~r~~a~~~l~~l~~~~-~~----~~~~~l~~~l~~~l----------~~-~~------------------ 402 (902)
.--|.+..-.++..- .. ..++.++|.+.+.+ .+ .+
T Consensus 273 -----------ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhks 341 (885)
T KOG2023|consen 273 -----------ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKS 341 (885)
T ss_pred -----------HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhc
Confidence 222333333333221 11 11222333332211 10 00
Q ss_pred --------------C----------CchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHH
Q 002596 403 --------------D----------EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (902)
Q Consensus 403 --------------~----------~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 458 (902)
+ ..|+.|+.+..+|..++.-.++. .++.++|.+-..|.++.+.||.++..++|
T Consensus 342 k~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~~l~PlLk~~L~~~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 342 KEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLPILLPLLKEHLSSEEWKVREAGVLALG 418 (885)
T ss_pred hhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHHHHHHHHHHHcCcchhhhhhhhHHHHH
Confidence 0 02999999999999999877754 57778999999999999999999999999
Q ss_pred hhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhccchhhH
Q 002596 459 RFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNL 537 (902)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~~~~~~ 537 (902)
.+++.+-+. ..+++..++|.+++.|.|..+-||.-.||+|+++.... ...-..|+.+++..+++.+-+.+.+++
T Consensus 419 AIAEGcM~g-----~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQ 493 (885)
T KOG2023|consen 419 AIAEGCMQG-----FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQ 493 (885)
T ss_pred HHHHHHhhh-----cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHH
Confidence 999987643 67889999999999999999999999999999999886 333346888888888888888888999
Q ss_pred HHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccc--cccHHHHHHHHHHH
Q 002596 538 RIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT--QFAQPVFQRCINII 615 (902)
Q Consensus 538 ~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~--~~~~~i~~~l~~~l 615 (902)
++++.+++++-+..|+++. ||++.++..+...++... .+.+.-+.++++.++..+|.+.. .|++.++|.+++-.
T Consensus 494 EAAcsAfAtleE~A~~eLV--p~l~~IL~~l~~af~kYQ--~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW 569 (885)
T KOG2023|consen 494 EAACSAFATLEEEAGEELV--PYLEYILDQLVFAFGKYQ--KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKW 569 (885)
T ss_pred HHHHHHHHHHHHhccchhH--HHHHHHHHHHHHHHHHHh--hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHH
Confidence 9999999999999999988 899999999998888753 44556778889999999998654 58899999998766
Q ss_pred HHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhcc--chHHHHHHHHhc-------C-----CChHHHH
Q 002596 616 QTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ--SNLRDMLLQCCM-------D-----DASDVRQ 681 (902)
Q Consensus 616 ~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~-------~-----~~~~vr~ 681 (902)
+.-. +.|+++.- .+++++.++.++|..|.||.+. ..-+.++-+|++ + ++-+..-
T Consensus 570 ~~ls-----------d~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI 637 (885)
T KOG2023|consen 570 ELLS-----------DSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFII 637 (885)
T ss_pred HhcC-----------cccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEE
Confidence 6421 22777653 5788999999999999998765 334455554432 1 1223334
Q ss_pred HHHHHHHHHHhhchHhhHHhHH--HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhc
Q 002596 682 SAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILK 759 (902)
Q Consensus 682 ~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~ 759 (902)
.++.+++-+++..|.++.+.+. .++..+.+++.++ -++||+.|...+|.+...+.+++.|++..++..+..-++
T Consensus 638 ~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~----~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 638 VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE----VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLN 713 (885)
T ss_pred EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC----ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCC
Confidence 6899999999999988887664 6999999999998 789999999999999999999999999999987775443
Q ss_pred CChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCc-HHHHHHHHHHHHHHHcCchhhhhhHHHHhh
Q 002596 760 HSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDD-TEKEDAFRGLCAMVKANPSGALSSLVFMCR 838 (902)
Q Consensus 760 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~-~e~~~~~~~l~~li~~~p~~~~~~l~~i~~ 838 (902)
.. +.++..||+.++|-++.+......|++..++..+...+...... .--+..--.+..+-...|+.+.+|++.|++
T Consensus 714 ~~---~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~ 790 (885)
T KOG2023|consen 714 PE---NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMR 790 (885)
T ss_pred hh---hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHH
Confidence 22 57899999999999999888778888888887777665442222 222233334455555678888888888776
Q ss_pred Hhhc-ccccCcHHHHH-HHHHHHHHHH
Q 002596 839 AIAS-WHEIRSEELHN-EVCQVLHGYK 863 (902)
Q Consensus 839 ~i~~-~~~~~~~~~~~-~~~~~l~~~~ 863 (902)
-... .++..+++.|+ ++.-++..++
T Consensus 791 pWc~sl~~i~DneEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 791 PWCTSLRNIDDNEEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHhcccccchhHHHHHHHHHHhee
Confidence 5422 33323334444 3555555444
No 11
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-30 Score=270.18 Aligned_cols=751 Identities=14% Similarity=0.173 Sum_probs=489.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccC--------
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-------- 86 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l-------- 86 (902)
++++|++.+.++.|.. +|+.||++|++++++|+|...++++++++ ..++.+|+.|++.+||.|.+.|+++
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 5789999999999999 99999999999999999999999999875 6899999999999999999999973
Q ss_pred -CHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 87 -SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 87 -~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
.++.|+.+++.++..+...+...|...-.++..|...+.+ +.|+ +.|....++.+++..+...++.++..+++...-
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 3456667777777766667778887777778888887755 8999 999999999999999999999999999987654
Q ss_pred ccccCCCCCCCcchhhhHHHHHHHhc---C-C---CHHHHHHHHHHHHHHhc-ccchhhHH--hHHHHHHHHHHhhC---
Q 002596 165 VLDSDVPGLAECPINIFLPRLLQFFQ---S-P---HTSLRKLSLGSVNQFIM-LMPSALFV--SMDQYLQGLFLLSN--- 231 (902)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~---~-~---~~~vr~~al~~l~~~~~-~~~~~~~~--~~~~~l~~l~~~~~--- 231 (902)
....+. .........++|.+.+.-+ + . +.++-...++.+...+. .+|+.+.. .+..+.+..+..++
T Consensus 160 k~ndeq-~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDEQ-VDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccchH-hhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 433221 0001223445555544332 2 2 34555566666666553 34543321 12222222222221
Q ss_pred -------CC-----C--HHHHHHHHHHHHHHHhhChhh--------hh----hhHHHHHHHHHhh--------hcCCCHH
Q 002596 232 -------DP-----S--AEVRKLVCAAFNLLIEVRPSF--------LE----PHLRNLFEYMLQV--------NKDTDDD 277 (902)
Q Consensus 232 -------~~-----~--~~vr~~~~~~l~~l~~~~~~~--------~~----~~l~~i~~~~~~~--------~~~~~~~ 277 (902)
|+ + ..++++++..|..+...+.+. +. ..++.++...++. ++-.|
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd-- 316 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSD-- 316 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecch--
Confidence 11 1 234566777777666543221 11 1222222222221 11122
Q ss_pred HHHHHHHHHHH-hhccCCchhhHHhhhhhhHHHH-HhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCC
Q 002596 278 VALEACEFWHS-YFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (902)
Q Consensus 278 v~~~al~~l~~-l~~~~~~~~~~~~~l~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~ 355 (902)
.....+.++.. ++..+..++.++|++.-++... ++.++.++++++.||.||+ +|+|.++....
T Consensus 317 ~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~-------eyirry~df~d-------- 381 (970)
T COG5656 317 IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPD-------EYIRRYYDFFD-------- 381 (970)
T ss_pred HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHH-------HHHHHhcchhc--------
Confidence 34455554444 4444557899999999998765 4889999999999988775 35554442211
Q ss_pred CCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc-----CCCCchHHHHHHHHHHHHHHhcch--hhhh
Q 002596 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCI--KGLY 428 (902)
Q Consensus 356 ~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~~a~~~l~~l~~~~~--~~~~ 428 (902)
+..+.--+|..++-.+....++..+..+++++...++. ++-+|.+..++|++.++++..-.. ....
T Consensus 382 -------~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a 454 (970)
T COG5656 382 -------NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA 454 (970)
T ss_pred -------CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH
Confidence 11234456777777777777888888889998888842 222458999999999999987222 2223
Q ss_pred hhHHH-HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 429 PHLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 429 ~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
..+.. +++++++.++++...+|.+||..++++.+.++ ......+++.....++.+++-.|+..|+.|+..|.
T Consensus 455 n~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi 527 (970)
T COG5656 455 NVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI 527 (970)
T ss_pred HHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 33333 78899999999999999999999999987765 45667788889999999988999999999999998
Q ss_pred HHh--cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHH----h----cCCC
Q 002596 508 EEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKW----Q----QLPN 577 (902)
Q Consensus 508 ~~~--~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l----~----~~~~ 577 (902)
.+- .+.+..|.+.+|+.|+.+-+..+.+.+.. ++..+++...+++. ||...++..+.+.+ + +.++
T Consensus 528 ~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~---vMe~fVe~fseELs--pfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 528 FNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM---VMESFVEYFSEELS--PFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred hchhhhHHHHhhhhHHHHHHHHhcccccchHHHH---HHHHHHHHhHHhhc--hhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 775 56678899999999998888777666654 44455566666666 78877777766632 2 2211
Q ss_pred -----CCcch--hhHHHHHHHHHHHhcc--ccccccHHHHHHHHHH-HHHHHHHhhcccccCCCCchhHHHHHhhhHHHH
Q 002596 578 -----SDKDL--FPLLECFTSIAQALGA--GFTQFAQPVFQRCINI-IQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (902)
Q Consensus 578 -----~~~~~--~~~l~~l~~i~~~~g~--~f~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l 647 (902)
+|+++ ..++.++..+...+.+ ....|+...+-..++. +.+. -.++...+++.+.+.
T Consensus 603 ~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~--------------i~dfy~Ea~dildg~ 668 (970)
T COG5656 603 TSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE--------------ISDFYQEALDILDGY 668 (970)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHhhh
Confidence 22333 4567777777766654 2333444332223332 2221 124555566666665
Q ss_pred HHHHhhhHHhhhccchHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhhchHhhH---HhHHHHHHHHHHhcCCCCCccchh
Q 002596 648 AEGLGSGIESLVAQSNLRDMLLQCCMDDAS-DVRQSAFALLGDLARVCPVHLQ---ARLSDFLDIAAKQLNTPKLKETVS 723 (902)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~~~~ 723 (902)
.-.. +.+.+.+.. ++.++.+++.+... +-...+.-++..+..+.+..+. -|..-+..+...++.++.. ..+
T Consensus 669 tf~s-keI~pimwg--i~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n--~l~ 743 (970)
T COG5656 669 TFMS-KEIEPIMWG--IFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN--FLE 743 (970)
T ss_pred hHHH-HHhhhhhhH--HHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhh--hHH
Confidence 4443 345566654 88889999887664 4455666778888888766554 2445555666667766531 223
Q ss_pred HhhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCc------cCcChHHHHH
Q 002596 724 VANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL------VSPHMEHFMQ 796 (902)
Q Consensus 724 v~~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~l~~~l~ 796 (902)
-+..+|.-+..++.+.++. ...|++-..+.....+...+. ....+-.+...+-.-....|.. ...++..++.
T Consensus 744 D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dE-lg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~ 822 (970)
T COG5656 744 DFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDE-LGPASVYALELIINNLILRPKETLQILEEQGYLQSFFE 822 (970)
T ss_pred HHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhcccc-ccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHH
Confidence 4567777777788777764 456676544444423322210 1111111111111111112211 1236778999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHcC
Q 002596 797 PWCIALSMIRDDTEKEDAFRGLCAMVKAN 825 (902)
Q Consensus 797 ~~~~~l~~~~d~~e~~~~~~~l~~li~~~ 825 (902)
.|++..|+.+..+.++...-++..+++..
T Consensus 823 ~wf~~ipkfkrvhdkKLsvlaIltii~l~ 851 (970)
T COG5656 823 KWFSQIPKFKRVHDKKLSVLAILTIIRLQ 851 (970)
T ss_pred HHHhcCcchhhhhhhHhHHHHHHHHHHhc
Confidence 99999998888888888888888888764
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-29 Score=261.37 Aligned_cols=744 Identities=16% Similarity=0.180 Sum_probs=510.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHH-hhc------CcCchHH-
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVV-QLG------GIAGWLE- 131 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~-~~~------~~~~w~~- 131 (902)
+.|+++|..|-..|++.-..++ ......|-+.|.+ .+...|..++-.+.+-. .++ ....|-.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l 83 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQL 83 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcC
Confidence 5788999999988876655443 2233444455543 35667777776666543 222 2245632
Q ss_pred -------HHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCC-HHHHHHHHHH
Q 002596 132 -------LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGS 203 (902)
Q Consensus 132 -------ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~vr~~al~~ 203 (902)
+-..+...+.++.|.....|..+++.|+.---+ ...++.+++.+..-..++. ..+|.+++.+
T Consensus 84 ~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP----------~n~wp~li~~lv~nv~~~~~~~~k~~slea 153 (859)
T KOG1241|consen 84 PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP----------QNQWPELIVTLVSNVGEEQASMVKESSLEA 153 (859)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc----------hhhCHHHHHHHHHhcccccchHHHHHHHHH
Confidence 334456667778888888899999888763111 1334666666666665553 3699999999
Q ss_pred HHHHhccc-chhhHHhHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHhhChhhhhhhH--HHHHHHHHhhhcCCCHHH
Q 002596 204 VNQFIMLM-PSALFVSMDQYLQGLFLLS--NDPSAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDTDDDV 278 (902)
Q Consensus 204 l~~~~~~~-~~~~~~~~~~~l~~l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~i~~~~~~~~~~~~~~v 278 (902)
++.+.+.. |+.+....+.++..+.... ..++..+|-.+..+|..-.+.....|.... .-|++...+..+.+|.++
T Consensus 154 lGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i 233 (859)
T KOG1241|consen 154 LGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEI 233 (859)
T ss_pred HHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHH
Confidence 99999776 4555566677777777754 356788999999999765554333332211 234555566677889999
Q ss_pred HHHHHHHHHHhhccCCchhhHHhhhhh-hHHHHHhhccCChhhh-----hhhhhhccCCCCCCCCCCCcccccccCCCCC
Q 002596 279 ALEACEFWHSYFEAQLPHENLKEFLPR-LVPVLLSNMIYADDDE-----SLVEAEEDESLPDRDQDLKPRFHSSRLHGSE 352 (902)
Q Consensus 279 ~~~al~~l~~l~~~~~~~~~~~~~l~~-l~~~ll~~l~~~~~d~-----~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~ 352 (902)
+..|+.++..++.. +.+.+.+|+.+ +++.-+..|....++. |.|..--+|.. ++. .
T Consensus 234 ~~aa~~ClvkIm~L--yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi-----D~~-----------~ 295 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSL--YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI-----DLA-----------I 295 (859)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----HHH-----------H
Confidence 99999999999887 78889999988 7888888887554443 33421100000 000 0
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc----CCCCchHHHHHHHHHHHHHHhcchhhhh
Q 002596 353 NPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCIKGLY 428 (902)
Q Consensus 353 ~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 428 (902)
+..+.-+...+ + -+..+-...++.++|.+.+.+.. .+++.|..-.+|-.||+-++..+.+.+-
T Consensus 296 e~~e~~d~~~~---p----------~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv 362 (859)
T KOG1241|consen 296 EYGEAVDQGLP---P----------SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV 362 (859)
T ss_pred HHHHHhhcCCC---c----------hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch
Confidence 00000000000 0 00111112244566666666653 2234499999999999999999987765
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
+ -++|++-..++.|+++-|.+|..++|.+-+.-.+ ....+...+.+|.++..+.|++..|+..+.++|+.+++
T Consensus 363 ~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~----~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 363 P---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP----DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred h---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch----hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 4 5789999999999999999999999988765432 23566788899999999999999999999999999999
Q ss_pred Hhcccc--hHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc--------CCchhhhhhhhHHHHHHHhcCCCC
Q 002596 509 EAAEEL--APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE--------LNQPVYLDILMPPLIAKWQQLPNS 578 (902)
Q Consensus 509 ~~~~~~--~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~--------~~~~~~~~~ll~~l~~~l~~~~~~ 578 (902)
.+.+.. ..++..+++.++.-+++. .++-..++.++-.+++...+. ... |+++.++..|+..-.....+
T Consensus 436 ~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 436 FLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccc
Confidence 986554 347788888888888653 455557788888888654322 222 56777777776654443334
Q ss_pred Ccch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCch----hHHHHHhhhHHHHHHHHhh
Q 002596 579 DKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK----EFVVCCLDLLSGLAEGLGS 653 (902)
Q Consensus 579 ~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~----~~~~~al~~l~~l~~~~~~ 653 (902)
+..+ ..+.++++.+++...+...|-...+...++.-|.+..+.+.- +.+ |+ ++......++..+.+.+|+
T Consensus 514 qsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l----~~~-dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQIL----SLA-DRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc----cHh-hHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4444 678999999999888776665555555555444443321100 000 22 2222234557777888888
Q ss_pred hHHhhhccchHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHH
Q 002596 654 GIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAI 732 (902)
Q Consensus 654 ~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~al 732 (902)
++.++.++ ++.++++.++. ++..+.+.|+..++.++...|..|..|++.+.|-+...|++.. ...|+..|+..+
T Consensus 589 ~~~~~~d~--iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~---e~qVc~~aVglV 663 (859)
T KOG1241|consen 589 DIREVSDQ--IMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ---EYQVCAAAVGLV 663 (859)
T ss_pred cchhHHHH--HHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHH
Confidence 88888886 99999998877 5566788999999999999999999999999999999996643 457899999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCC---cH
Q 002596 733 GELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD---DT 809 (902)
Q Consensus 733 g~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d---~~ 809 (902)
|+++...++.|.||.+.++..|+..|+++. .+++++-...+++|.|+..-...+.||++-+++.+-.+-....| ++
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~-~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~ 742 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPN-LHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDS 742 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCcc-ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCccc
Confidence 999999999999999999999999999986 58999999999999999988888889999888887655422112 11
Q ss_pred -------HHH---HHHHHHHHHHHcCc--hhhhhhHHHHhhHhhcc-ccc-CcHHHHHHHHHHHHHHHhhcChhhHHHH
Q 002596 810 -------EKE---DAFRGLCAMVKANP--SGALSSLVFMCRAIASW-HEI-RSEELHNEVCQVLHGYKQMLRNGAWDQC 874 (902)
Q Consensus 810 -------e~~---~~~~~l~~li~~~p--~~~~~~l~~i~~~i~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 874 (902)
-|+ .+|.|+..-++.++ ..+.++++.|++.+.+- .++ .++.+.....-+++.+..+||++..+.+
T Consensus 743 ~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~ 821 (859)
T KOG1241|consen 743 MVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLF 821 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhh
Confidence 122 45666666666533 34458888888887662 222 2344666677888888888885444433
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.7e-26 Score=246.75 Aligned_cols=803 Identities=15% Similarity=0.165 Sum_probs=528.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH-Hhhc---------CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 002596 19 RLLEQQISPSSTADKSQIWQQLQ-QYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (902)
Q Consensus 19 ~~l~~~~s~~~~~~r~~a~~~L~-~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~ 88 (902)
.+++.+.|+|.+ .|-.|+.-|. ++++ .+.....+++.|. +.+.++.+.|.-.+--.. +++.+
T Consensus 9 ~LlekmtssDKD-fRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~---D~ngEVQnlAVKClg~lv----sKvke 80 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD-FRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE---DKNGEVQNLAVKCLGPLV----SKVKE 80 (1233)
T ss_pred HHHHHccCCCcc-hhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh---ccCcHHHHHHHHHHHHHH----hhchH
Confidence 889999999999 9999999884 4654 1334566777665 568899999987775444 34677
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc--------CchHHHHHHHHHHhcc--CChhhhhHHHHHHHHH
Q 002596 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDS--NDINHMEGAMDALSKI 158 (902)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~--------~~w~~ll~~L~~~l~~--~~~~~r~~al~~L~~l 158 (902)
+..+.+.+.|...+-+.....|...+..+.......+| ...+.+.+.+.+.+.. +...++-.++.+++.+
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 77888999999988777777777666666655544432 3345566666666543 2335777788888777
Q ss_pred HhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhC-CCCHHH
Q 002596 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEV 237 (902)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~v 237 (902)
...+++.+.+ .-..++..++.-++.+...||+.|+.+++.+....+......+ +..+...+. .+....
T Consensus 161 lsr~g~ll~~--------fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~l---i~~Ll~~L~~~~q~~~ 229 (1233)
T KOG1824|consen 161 LSRFGTLLPN--------FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVEL---IEHLLKGLSNRTQMSA 229 (1233)
T ss_pred HHhhcccCcc--------hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHHHHhccCCCCchHH
Confidence 7766654422 1245555666667777889999999999999988776554433 555555443 344555
Q ss_pred HHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhc
Q 002596 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (902)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~---~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l 314 (902)
.+..++++..++......+..|++.+++.+.+.. +..+++.|..+++.+..+... .+..+.||.+.++..++.++
T Consensus 230 ~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 230 TRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred HHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHh
Confidence 6678899999999888899999999999988876 667888999999999888877 77888999999999999999
Q ss_pred cCChhhhhhhhhhccCC-CCCCCCCCCcccccccCCCCCCC--CCCCccccccccHHHHHHHHHHHHHhhcCc---chhh
Q 002596 315 IYADDDESLVEAEEDES-LPDRDQDLKPRFHSSRLHGSENP--EDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILP 388 (902)
Q Consensus 315 ~~~~~d~~~~~~~~~~~-~~~~~~~i~p~~~~~~~~~~~~~--~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~ 388 (902)
.|...-....++|+++. .+|.+ |++ ++..||++..|.+|++|++++..+.....+ .+..
T Consensus 308 sYDPNy~yd~~eDed~~~~ed~e---------------Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q 372 (1233)
T KOG1824|consen 308 SYDPNYNYDTEEDEDAMFLEDEE---------------DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ 372 (1233)
T ss_pred ccCCCCCCCCccchhhhhhhccc---------------cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88643211111111100 00000 111 112234567899999999999876554321 1111
Q ss_pred h-------------------hHHHHHHhhcc----------CC------------------------------CCchHHH
Q 002596 389 T-------------------LMPVIQAKLSA----------SG------------------------------DEAWKDR 409 (902)
Q Consensus 389 ~-------------------l~~~l~~~l~~----------~~------------------------------~~~~~~r 409 (902)
. ++......+.. .+ ++.-+.|
T Consensus 373 ~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~ 452 (1233)
T KOG1824|consen 373 TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTR 452 (1233)
T ss_pred HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccch
Confidence 1 11111111111 00 0013355
Q ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCCh--HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHH
Q 002596 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (902)
Q Consensus 410 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 487 (902)
.+++..|..+....++.+.++++.++|.+...++|.+. ..+.-++.++....... .++...++...+.+.+..+
T Consensus 453 ~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~----~p~~fhp~~~~Ls~~v~~a 528 (1233)
T KOG1824|consen 453 QGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH----PPEVFHPHLSALSPPVVAA 528 (1233)
T ss_pred hhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC----ChhhcccchhhhhhHHHHH
Confidence 56666777777777777889999999999999998654 44444444443322221 2334677888899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhc-------ccchHhHHHHHHHHHHHHhcc--chhhHHHHHHHHHHHHHHhcccCCch
Q 002596 488 ILDTNKRVQEAACSAFATLEEEAA-------EELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQP 558 (902)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~~~~~-------~~~~p~l~~i~~~l~~~l~~~--~~~~~~~~~~al~~l~~~~~~~~~~~ 558 (902)
..|+-..+-..|......+++... -...||..+++...++.+... +.++++.+..++|.++..+|+...
T Consensus 529 V~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~-- 606 (1233)
T KOG1824|consen 529 VGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLG-- 606 (1233)
T ss_pred hcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhh--
Confidence 999999999999999999998762 246789999999888888644 557899999999999999997766
Q ss_pred hhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHH
Q 002596 559 VYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (902)
Q Consensus 559 ~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~ 637 (902)
..++..+|.+.+++++ +.....++.++..|+...-. ...|-+..+++.+...+.... ..++
T Consensus 607 ~eL~~~L~il~eRl~n----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~--------------r~lr 668 (1233)
T KOG1824|consen 607 NELPRTLPILLERLGN----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ--------------RALR 668 (1233)
T ss_pred hhhHHHHHHHHHHHhc----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH--------------HHHH
Confidence 6788899999888874 45556788888888875433 566788888888888777653 2456
Q ss_pred HHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCC
Q 002596 638 VCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPK 717 (902)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (902)
...+.++..+++..+..+..+.-+ .++.-+...+...+-.+-+.|+.++..+....+..+....+.+++.++..++++-
T Consensus 669 ~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl 747 (1233)
T KOG1824|consen 669 LATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL 747 (1233)
T ss_pred HHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc
Confidence 677888888888888776655432 2333333334445566778899999999988888888888899999999998873
Q ss_pred CccchhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhhcCChh------hhhhHHHHHHHHHHHHhhhcCCccCcC
Q 002596 718 LKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEE------LNKSLIENSAITLGRLAWVCPELVSPH 790 (902)
Q Consensus 718 ~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~ 790 (902)
.. .--.+++..+-+.+...+ ..+ +|. .+...+..|-. .++...-..+.|++.+...+|+.-.+-
T Consensus 748 lq---g~al~~~l~~f~alV~t~~~~l-~y~-----~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~ 818 (1233)
T KOG1824|consen 748 LQ---GGALSALLLFFQALVITKEPDL-DYI-----SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSL 818 (1233)
T ss_pred cc---chHHHHHHHHHHHHHhcCCCCc-cHH-----HHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhH
Confidence 21 111222222222222222 333 232 23344444321 234444456777788888888654433
Q ss_pred hHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhh
Q 002596 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGA 870 (902)
Q Consensus 791 l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 870 (902)
...++..+.+ -...+..+..++-.|..+=++.+..-.+.++. -++..+.. +.+|++.+....++.+... +
T Consensus 819 a~kl~~~~~s---~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~--~iieaf~s-p~edvksAAs~ALGsl~vg----n 888 (1233)
T KOG1824|consen 819 ATKLIQDLQS---PKSSDSIKVFALLSLGELGRRKDLSPQNELKD--TIIEAFNS-PSEDVKSAASYALGSLAVG----N 888 (1233)
T ss_pred HHHHHHHHhC---CCCchhHHHHHHhhhhhhccCCCCCcchhhHH--HHHHHcCC-ChHHHHHHHHHHhhhhhcC----c
Confidence 4444444333 33445567677777777766655433333333 23333443 5678999999999888862 3
Q ss_pred HHHHHhcCCHHHHHHH-hhcccchhhhhhhhc
Q 002596 871 WDQCMSALEPPVKDKL-SKYQVHDSIVTLIIK 901 (902)
Q Consensus 871 ~~~~~~~l~~~~~~~l-~~y~~~~~~~~~~~~ 901 (902)
-+.|++.+-..+...= ++|=+=|++-+.|++
T Consensus 889 l~~yLpfil~qi~sqpk~QyLLLhSlkevi~~ 920 (1233)
T KOG1824|consen 889 LPKYLPFILEQIESQPKRQYLLLHSLKEVIVS 920 (1233)
T ss_pred hHhHHHHHHHHHhcchHhHHHHHHHHHHHHHH
Confidence 4444433333333332 225555666555543
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.4e-23 Score=212.83 Aligned_cols=639 Identities=15% Similarity=0.160 Sum_probs=426.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhcCcCc----hHHHHHHH
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAG----WLELLQAL 136 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~----w~~ll~~L 136 (902)
+..+..-++|+-++-..-.. .++...-..+...+.....++ ...++...-.+++.++....|+. ...++-.+
T Consensus 105 s~epr~~~~Aaql~aaIA~~---Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ai 181 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARM---ELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAI 181 (858)
T ss_pred CCccHHHHHHHHHHHHHHHh---hCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHH
Confidence 34455555555444322211 133333334444555555543 34455555567777777654422 22233333
Q ss_pred HHHhcc--CChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchh
Q 002596 137 VTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (902)
Q Consensus 137 ~~~l~~--~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (902)
...... .+..+|-+|+.+|..-+......+..+ ...+.+++.+...-+.++.++..+|+.||+.++...-+.
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E------~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~f 255 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE------EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKF 255 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch------hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 355899999999988666666555433 234788889999999999999999999999988653333
Q ss_pred hHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhChh--h---------------hhhhHHHHHHHHHhhhc----
Q 002596 215 LFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPS--F---------------LEPHLRNLFEYMLQVNK---- 272 (902)
Q Consensus 215 ~~~~~~~~l~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~--~---------------~~~~l~~i~~~~~~~~~---- 272 (902)
+..+++.-+-.+.. ...+++.++...+++.+..+++..-+ . -.....+++|-++..+.
T Consensus 256 m~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~e 335 (858)
T COG5215 256 MQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGE 335 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCC
Confidence 33444433333322 34578889999999999887754211 0 01123345665555532
Q ss_pred CC---CHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 002596 273 DT---DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (902)
Q Consensus 273 ~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 349 (902)
+. |-.+...|-.++.-+++.. .-..++|.+.- .-+.+
T Consensus 336 d~~~DdWn~smaA~sCLqlfaq~~-gd~i~~pVl~F----vEqni----------------------------------- 375 (858)
T COG5215 336 DYYGDDWNPSMAASSCLQLFAQLK-GDKIMRPVLGF----VEQNI----------------------------------- 375 (858)
T ss_pred CccccccchhhhHHHHHHHHHHHh-hhHhHHHHHHH----HHHhc-----------------------------------
Confidence 22 1123333333333333321 11233332221 10000
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc----chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchh
Q 002596 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (902)
Q Consensus 350 ~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~ 425 (902)
..++|.-|.+|.-+++.+...-.. .++|..+|.+...+.++. -..+..+.+|+|+++....+
T Consensus 376 -----------~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~---l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 376 -----------RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC---LWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred -----------cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce---eehhhHHHHHHHHHHHHHHH
Confidence 113588999999999887665432 456778888888888776 66788899999999998887
Q ss_pred hhh--hhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhc--CCcchhhHHHHHHHHHHHh--cCCCHHHHHHH
Q 002596 426 GLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEKVLMGLLKRI--LDTNKRVQEAA 499 (902)
Q Consensus 426 ~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~il~~l~~~l--~d~~~~v~~~a 499 (902)
.+. .|++-.++..+.++.| +|++...++|....+.+++++..+ +....+++..++..|++.- .+++...|.++
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~ 520 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSL 520 (858)
T ss_pred hcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 775 4778888888888876 788999999999999999987532 2234566777777777643 35678889999
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHhcc-----------c----hhhHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 002596 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-----------Q----RRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (902)
Q Consensus 500 ~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~-----------~----~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l 564 (902)
.++|++++..+++.+.+.+-.+.....+.+... + .+.+...+..+..+++..+.++. +..+++
T Consensus 521 fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie--~v~D~l 598 (858)
T COG5215 521 FSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE--DVEDQL 598 (858)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cHHHHH
Confidence 999999999988777666555544444443321 1 13344667888888888888877 788899
Q ss_pred hHHHHHHHhcCCCCCcch--hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhh
Q 002596 565 MPPLIAKWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLD 642 (902)
Q Consensus 565 l~~l~~~l~~~~~~~~~~--~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~ 642 (902)
|..++..+++. ++.. ..++-.++.+...+|+.|..|++.++|.+.+.++.. |.-+...+..
T Consensus 599 m~Lf~r~les~---~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~--------------d~~v~~~avg 661 (858)
T COG5215 599 MELFIRILEST---KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT--------------DRFVLNSAVG 661 (858)
T ss_pred HHHHHHHHhcc---CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch--------------hHHHHHHHHH
Confidence 99999988874 2322 567888899999999999999999999998877421 6667778899
Q ss_pred hHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCcc
Q 002596 643 LLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (902)
Q Consensus 643 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 720 (902)
.++.++..+|.+|.+|-+. ++..|..|++++ .-+++-..+.++||++...|..|.+|++.++-.+.+.-.-....+
T Consensus 662 lvgdlantl~~df~~y~d~--~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~ 739 (858)
T COG5215 662 LVGDLANTLGTDFNIYADV--LMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD 739 (858)
T ss_pred HHHHHHHHhhhhHHHHHHH--HHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999986 888899999864 346677888999999999999999999998876554422211111
Q ss_pred ---chhHhhhHH-------HHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCc
Q 002596 721 ---TVSVANNAC-------WAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (902)
Q Consensus 721 ---~~~v~~~a~-------~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (902)
-.+.|.++. .++|.-.+.-.+.+.||+..++..+..+-.+++- .++....+.+.+|.++..+|..
T Consensus 740 ~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~-se~~traalGLigDla~mfpkg 814 (858)
T COG5215 740 EVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG-SEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred ceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc-chhHHHHHHHHHHHHHHhCCCc
Confidence 123344433 3333333322345789999999888877777763 4666678889999999988875
No 15
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=1.8e-23 Score=223.70 Aligned_cols=669 Identities=14% Similarity=0.155 Sum_probs=481.9
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHH
Q 002596 56 ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQA 135 (902)
Q Consensus 56 il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~ 135 (902)
++...++.|...|.+|..=|-+.+++.--.+..+.-..+...+++.|.|.++.|.+-+..+++.++++-+..+...+...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~ 89 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVEN 89 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 34334467889999999999999988877788877778888999999999999999999999999988888888899999
Q ss_pred HHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHhcccch
Q 002596 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPS 213 (902)
Q Consensus 136 L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~ 213 (902)
|...+-++....|..+-..|.......++...+... ...++.+.|.+.+.+.. +...++..++..+..+....++
T Consensus 90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la---~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA---ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HhhhhccchhhhccHHHHHHHHHHhcCCCccccccc---cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 999888888888887777777776666653221110 13456666666666654 3456899999998887765444
Q ss_pred hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHhhcc
Q 002596 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-DDDVALEACEFWHSYFEA 292 (902)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~v~~~al~~l~~l~~~ 292 (902)
-+.+.-..++..+..-+..+...+|+.++.++..++...+..+. ..+++-++..+... .......-+.++.++++.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly---~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY---VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 33333334555665556667788999999999999988776543 34555555555443 333334557788888877
Q ss_pred CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 002596 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (902)
Q Consensus 293 ~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~ 372 (902)
....+..+++.++|.+.+++...++ +|| .+|..+.
T Consensus 244 --ag~r~~~h~~~ivp~v~~y~~~~e~-------------------------------------~dD------ELrE~~l 278 (1233)
T KOG1824|consen 244 --AGHRFGSHLDKIVPLVADYCNKIEE-------------------------------------DDD------ELREYCL 278 (1233)
T ss_pred --hcchhhcccchhhHHHHHHhccccc-------------------------------------CcH------HHHHHHH
Confidence 5667788999999999888764321 111 2899999
Q ss_pred HHHHHHHhhcCcch---hhhhHHHHHHhhc-cCC------------------------------CCchHHHHHHHHHHHH
Q 002596 373 AALDVLSNVFGDEI---LPTLMPVIQAKLS-ASG------------------------------DEAWKDREAAVLALGA 418 (902)
Q Consensus 373 ~~l~~l~~~~~~~~---~~~l~~~l~~~l~-~~~------------------------------~~~~~~r~~a~~~l~~ 418 (902)
+++..+....+.++ +|.+++.+.+++. +++ +..|++|.+|..++..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 99999999998755 4566677666664 110 1259999999999999
Q ss_pred HHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhh------------cCCcchhhHHH----HHH
Q 002596 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI------------GHQNGREQFEK----VLM 482 (902)
Q Consensus 419 l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------------~~~~~~~~~~~----il~ 482 (902)
+...-.+.+..+...+-|.++..+++....|+.-.+.+.-.+..+...+. +++....++.. ++.
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk 438 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK 438 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH
Confidence 98877777777888899999999999999999888777666554433211 11112233443 444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchh-hHH-HHHHHHHHHHHHhc-ccCCchh
Q 002596 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLR-IVYDAIGTLADAVG-FELNQPV 559 (902)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~-~~~-~~~~al~~l~~~~~-~~~~~~~ 559 (902)
.+-+.+++.+...+..|...|..++...+..+.+|++.+++.+...+++.... +.. .++..+..+....+ +.|. |
T Consensus 439 ai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh--p 516 (1233)
T KOG1824|consen 439 AIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH--P 516 (1233)
T ss_pred HHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc--c
Confidence 44455555556677888888999999899999999999999999999876442 222 23333333333333 4444 7
Q ss_pred hhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-------ccccccHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002596 560 YLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-------GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQ 631 (902)
Q Consensus 560 ~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~-------~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e 631 (902)
++..+.|++.....+ .-+.+ ..++-....+++.+.+ ++.||..+++...++.+....
T Consensus 517 ~~~~Ls~~v~~aV~d---~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d------------ 581 (1233)
T KOG1824|consen 517 HLSALSPPVVAAVGD---PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATD------------ 581 (1233)
T ss_pred chhhhhhHHHHHhcC---chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccc------------
Confidence 888888877665543 22333 3444444555555532 567898888888877776532
Q ss_pred CchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhch-HhhHHhHHHHHHHHH
Q 002596 632 YDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAA 710 (902)
Q Consensus 632 ~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~ 710 (902)
.|.+++++++++++.++..+|......++. .++++...+++ .-.|-.|+.++..++...- -...|.+..+++.+.
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~--~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPR--TLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 277899999999999999999777777764 88888888865 4458889999988887543 245678888888888
Q ss_pred HhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCc
Q 002596 711 KQLNTPKLKETVSVANNACWAIGELAVKARQEISPI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSP 789 (902)
Q Consensus 711 ~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 789 (902)
.-+... ....|.....++..++.+.+..+.++ ++.++..+.+++..++ .++.+++..++..+....|..+..
T Consensus 658 ~flrK~----~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesd---lhvt~~a~~~L~tl~~~~ps~l~~ 730 (1233)
T KOG1824|consen 658 SFLRKN----QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESD---LHVTQLAVAFLTTLAIIQPSSLLK 730 (1233)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHhcccHHHHH
Confidence 777654 44678888889999998888777666 6778888888888764 788999999999999888887665
Q ss_pred ChHHHHHHHHHhcc
Q 002596 790 HMEHFMQPWCIALS 803 (902)
Q Consensus 790 ~l~~~l~~~~~~l~ 803 (902)
.-+.+++..+..+.
T Consensus 731 ~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 731 ISNPILDEIIRLLR 744 (1233)
T ss_pred HhhhhHHHHHHHhh
Confidence 55666776666553
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-20 Score=196.58 Aligned_cols=697 Identities=14% Similarity=0.139 Sum_probs=462.2
Q ss_pred CCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhc---CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh-
Q 002596 7 WQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT- 81 (902)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~-~~~---~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~- 81 (902)
.++.+.....+..+|-...++++. -|+.|..+|.. ..+ -|-|.+. +-++.+. +.++.-||+-.-.+-+.+-+
T Consensus 355 L~~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnqi-LpllMs~-tLeDqerhllVkvidriLykl 431 (1172)
T KOG0213|consen 355 LEDEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQI-LPLLMSP-TLEDQERHLLVKVIDRILYKL 431 (1172)
T ss_pred cCcccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHHH-HHHHcCc-cccchhhhhHHHHHHHHHHhh
Confidence 345666677788888888898888 99999998854 222 3445554 4445543 66777888877666665532
Q ss_pred -----hhcc----------CCHhHHHH-----HHHHHh---------hhh----hcCChHHHHHHHHHHHHHHhhcCcCc
Q 002596 82 -----AYKS----------MSPSNQQY-----IKSELL---------PCL----GAADRHIRSTVGTIVSVVVQLGGIAG 128 (902)
Q Consensus 82 -----~w~~----------l~~~~~~~-----i~~~ll---------~~l----~~~~~~vr~~~a~~l~~i~~~~~~~~ 128 (902)
.|.+ +.++.+.. |...|. ..+ .+.++.||++.|.+++.+++.. .
T Consensus 432 DdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---g 508 (1172)
T KOG0213|consen 432 DDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---G 508 (1172)
T ss_pred cccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---C
Confidence 1211 23322211 111111 112 1358899999999999999876 5
Q ss_pred hHHHHHHHHHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002596 129 WLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (902)
Q Consensus 129 w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~ 207 (902)
.|.++|+|...+.|. ++..|+.++.+..+|+...+-..- +++..++..+-.++.|.+..||..+..++..+
T Consensus 509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvl--------phl~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVL--------PHLKPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhh--------hhhHHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 689999999999987 889999999999999987664332 34577888888899999999999999999999
Q ss_pred hcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhh-hHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 002596 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVNKDTDDDVALEACEFW 286 (902)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~l~~i~~~~~~~~~~~~~~v~~~al~~l 286 (902)
.+...+.-...|+.++..|..-+...........++++..++......-.. |-..++-.++.-..++|++.+...+.++
T Consensus 581 aeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv 660 (1172)
T KOG0213|consen 581 AEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVV 660 (1172)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHH
Confidence 987766667778888888887665444444455566666665433333233 4456777777778889999999999999
Q ss_pred HHhhccCC-chhhHHhhhhhhHHHHHhh-----ccCChhhhhhh-hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 002596 287 HSYFEAQL-PHENLKEFLPRLVPVLLSN-----MIYADDDESLV-EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (902)
Q Consensus 287 ~~l~~~~~-~~~~~~~~l~~l~~~ll~~-----l~~~~~d~~~~-~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~ 359 (902)
..+|.... ..+.++ ..++|.++.. |.......... +....-....+...+-.+.. ++.-||.
T Consensus 661 ~qcc~t~Gv~~~y~r---~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v-------~~lkde~- 729 (1172)
T KOG0213|consen 661 KQCCATDGVEPAYIR---FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVV-------LDLKDEP- 729 (1172)
T ss_pred HHHhcccCCCHHHHh---hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHh-------hhhcccc-
Confidence 99887622 122221 2233333321 11100000000 00000000000000000000 1111111
Q ss_pred cccccccHHHHHHHHHHHHHhhcCc-----chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHH
Q 002596 360 DIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (902)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i 434 (902)
-..|+....+.+++...+|. .....++.-+...++.+. -.. -.-+..+|.++......+++|++.+
T Consensus 730 -----e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~d-~vml~gfg~V~~~lg~r~kpylpqi 800 (1172)
T KOG0213|consen 730 -----EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TED-SVMLLGFGTVVNALGGRVKPYLPQI 800 (1172)
T ss_pred -----HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cch-hhhhhhHHHHHHHHhhccccchHHH
Confidence 13799999999999998874 223344444444555433 111 1445678888888888889999999
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-cc
Q 002596 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EE 513 (902)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~ 513 (902)
+..++..|+++.+.||..|+..+++++..+... ...+.+..+=..|.+.+....+.|--....|+..++...+ ..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999887643 1223344444556677888889999999999998888763 55
Q ss_pred chHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHH
Q 002596 514 LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSI 592 (902)
Q Consensus 514 ~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i 592 (902)
+.|-+..++|.|...|.+...+++.+..+.++.++....+...-.+|+..... |++.++.. .+.+ .++.++||.|
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe-LlelLkah---kK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE-LLELLKAH---KKEIRRAAVNTFGYI 952 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHH---HHHHHHHHHhhhhHH
Confidence 77888999999999999999999999999999999876664432345544433 44444442 2344 6789999999
Q ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHh
Q 002596 593 AQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCC 672 (902)
Q Consensus 593 ~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 672 (902)
++++|+. .++..+++-|+.. |...+.|..-+++.+++..|. | .++|.|+.-.
T Consensus 953 akaIGPq------dVLatLlnnLkvq--------------eRq~RvcTtvaIaIVaE~c~p----F----tVLPalmneY 1004 (1172)
T KOG0213|consen 953 AKAIGPQ------DVLATLLNNLKVQ--------------ERQNRVCTTVAIAIVAETCGP----F----TVLPALMNEY 1004 (1172)
T ss_pred HHhcCHH------HHHHHHHhcchHH--------------HHHhchhhhhhhhhhhhhcCc----h----hhhHHHHhhc
Confidence 9999973 3444454444421 556666666666666666553 2 3788887777
Q ss_pred cCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhh-hhhHHHHHH
Q 002596 673 MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVV 751 (902)
Q Consensus 673 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il 751 (902)
..++..|.+..+..++-+.++.++.-..|+-.+.|.+...|.+. +..-|+.|+.++..++.....- -...+-.++
T Consensus 1005 rtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr----D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLL 1080 (1172)
T KOG0213|consen 1005 RTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR----DLVHRQTAMNVIKHLALGVPGTGCEDALIHLL 1080 (1172)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc----cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHH
Confidence 77788888888899999999988888899999999999999988 6788999999999988654311 112222333
Q ss_pred HHHHHhhcCChhhhhhHHHHHHHHHHHHh
Q 002596 752 LCLVPILKHSEELNKSLIENSAITLGRLA 780 (902)
Q Consensus 752 ~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (902)
..+.+-+-.++ +++.+....++-.+.
T Consensus 1081 N~iWpNIle~s---Phviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1081 NLIWPNILETS---PHVIQAFDEAMEGLR 1106 (1172)
T ss_pred HHhhhhhcCCC---hHHHHHHHHHHHHHH
Confidence 33333333333 455555555554444
No 17
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.6e-20 Score=196.96 Aligned_cols=646 Identities=16% Similarity=0.213 Sum_probs=404.2
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHH
Q 002596 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (902)
Q Consensus 15 ~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~ 92 (902)
+.+.|++.++..| |.. .|+||...+++++..|+.|..+..++... +.++.+|..+...|...++..+...+.....
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~~-ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLINE-TSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHhh-cccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4577777777766 666 99999999999999999999999999853 5889999999999999999888889999999
Q ss_pred HHHHHHhhhhh-----cC----ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCCh-hhhhHHHHHHHHHHhhc
Q 002596 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDI 162 (902)
Q Consensus 93 ~i~~~ll~~l~-----~~----~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~~~ 162 (902)
.+|..+...+. +. .+.+|+.++++++.++..+++..|++++..++..+.-+.. .-..--+++|..|-.+.
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEi 160 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEI 160 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHh
Confidence 99999987663 22 6789999999999999999999999999998888764432 11222233332222222
Q ss_pred hhc--cccC----CCCC----C-CcchhhhHHHHHHHhc---CC-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHH
Q 002596 163 PQV--LDSD----VPGL----A-ECPINIFLPRLLQFFQ---SP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (902)
Q Consensus 163 ~~~--~~~~----~~~~----~-~~~~~~l~~~l~~~l~---~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (902)
.+. ..+. .... + ++.++++...-+++++ .. ++.+-..++.|++.++.++.-.+.. -+.+++.++
T Consensus 161 ad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy 239 (980)
T KOG2021|consen 161 ADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLY 239 (980)
T ss_pred hhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHH
Confidence 111 0000 0000 0 1234445544455443 33 8888999999999999886543322 123455555
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHhhChhh----------------------------------------------------
Q 002596 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSF---------------------------------------------------- 255 (902)
Q Consensus 228 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~---------------------------------------------------- 255 (902)
..++ .+++|.+||.|+.+++...-+-
T Consensus 240 ~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~l 317 (980)
T KOG2021|consen 240 KFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQL 317 (980)
T ss_pred HHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhh
Confidence 5543 3566777776665554321110
Q ss_pred -----------hhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc----CCchhhHHhhhhhhHHHHHhhccCChhh
Q 002596 256 -----------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDD 320 (902)
Q Consensus 256 -----------~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~----~~~~~~~~~~l~~l~~~ll~~l~~~~~d 320 (902)
....+-.+++++++.+.+.++++....+.||...... +......+.++.+++......++|.+..
T Consensus 318 nseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 318 NSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 0112233455566666666666666666666554322 1122223345566666666666654321
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc
Q 002596 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (902)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (902)
.|+ |+-. ++|++...-.+|+.--..+++++..-|+.++..+-.-+...+.+
T Consensus 398 --~nd--------------------------dn~t-g~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~n 448 (980)
T KOG2021|consen 398 --FND--------------------------DNVT-GDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMN 448 (980)
T ss_pred --hcc--------------------------cCCC-CchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 111 1101 11122223368999988999988888776666666666666665
Q ss_pred CCCCchHHHHHHHHHHHHHHhcchhh--------h--hhhHHHHHHHHhh--ccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002596 401 SGDEAWKDREAAVLALGAIAEGCIKG--------L--YPHLSEIVAFLIP--LLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (902)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~--------~--~~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (902)
....+|..-|.|+..+..++|+.... + +..+..+++.+.. .+.++|+.|.---+..+.++...+..
T Consensus 449 s~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~-- 526 (980)
T KOG2021|consen 449 SKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST-- 526 (980)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--
Confidence 54455999999999999999876532 1 1234445555544 35688999999999999998888753
Q ss_pred cCCcchhhHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccc------------h
Q 002596 469 GHQNGREQFEKVLMGLL--KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ------------R 534 (902)
Q Consensus 469 ~~~~~~~~~~~il~~l~--~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~------------~ 534 (902)
..+++..++.+.+ .++++.+.+||.+|.+.+.+|++.++..+.||.++|+..+..+|.... .
T Consensus 527 ----esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 527 ----ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred ----chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 4556666776666 356677899999999999999999999999999999999999993211 1
Q ss_pred hhHHHHHHHHHHHHHHhcccC-CchhhhhhhhHHHHHHHh------cCCCCCcchhhHHHHH------HHHHHHhccccc
Q 002596 535 RNLRIVYDAIGTLADAVGFEL-NQPVYLDILMPPLIAKWQ------QLPNSDKDLFPLLECF------TSIAQALGAGFT 601 (902)
Q Consensus 535 ~~~~~~~~al~~l~~~~~~~~-~~~~~~~~ll~~l~~~l~------~~~~~~~~~~~~l~~l------~~i~~~~g~~f~ 601 (902)
.....+++++|.++..-.-.- .+..|++.++.+++.... ....+......+.+|. +..++.+.....
T Consensus 603 ddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlv 682 (980)
T KOG2021|consen 603 DDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLV 682 (980)
T ss_pred cccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCc
Confidence 234456788887664221100 012466655554433211 1111111112344443 333332222111
Q ss_pred c----ccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCCh
Q 002596 602 Q----FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDAS 677 (902)
Q Consensus 602 ~----~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 677 (902)
+ -...++..+...+-.... ... .-..+|.+..-.++.++..+|+..-|++|+ +..++ +.|.+.
T Consensus 683 t~~qvg~~~vf~~~ldvil~~ls---~f~-----k~E~iRsavrft~hRmI~~lg~~vlPfipk--lie~l---L~s~d~ 749 (980)
T KOG2021|consen 683 TENQVGNMVVFSNILDVILVTLS---FFN-----KFENIRSAVRFTFHRMIPILGNKVLPFIPK--LIELL---LSSTDL 749 (980)
T ss_pred chhcccHHHHHHHHHHHHHHHHh---hcc-----ccchhHHHHHHHHHHHHHhcchhhhcchHH--HHHHH---HhcCCH
Confidence 1 111122222211111000 000 022466667778899999999999888876 55544 456666
Q ss_pred HHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhc
Q 002596 678 DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQL 713 (902)
Q Consensus 678 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 713 (902)
.....-+.++..+...+..++.+.+++++|.+...+
T Consensus 750 kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 750 KEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677888888888888888898888887766544
No 18
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.92 E-value=3.1e-20 Score=200.23 Aligned_cols=753 Identities=15% Similarity=0.186 Sum_probs=405.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhcc-----CCHhH
Q 002596 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSN 90 (902)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~-----l~~~~ 90 (902)
+++..+...+|+++. .+|.||+.|++++++++|...|..|..+. +.+-.+|..|.+.+||.|.++|.. +.++.
T Consensus 5 ~vv~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~-~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e 82 (947)
T COG5657 5 PVVKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLSA-FNSMSLRWAALIQFKNYIDKHWREENGNSILPDE 82 (947)
T ss_pred HHHHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhcc-ccchhHHHHHHHHHHhhHHHHhhhhcccCCCCcc
Confidence 345566778899999 99999999999999999999899998753 689999999999999999999985 55666
Q ss_pred HHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCC
Q 002596 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (902)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~ 170 (902)
+..||..++.++-+.+..+.-+.|.+++.||+.+.|+.||++++.|...+++.|-...++.+.++..+++.+.....++
T Consensus 83 ~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd- 161 (947)
T COG5657 83 NVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD- 161 (947)
T ss_pred chHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH-
Confidence 6699999999988776666668999999999999999999999999999999888888899999999999887655442
Q ss_pred CCCCCcchhhhHHHHHHHhcC--CCHHHH-----------HHHHHHHHHHhc----ccchhhHHhHHHHHHHHHHhhCCC
Q 002596 171 PGLAECPINIFLPRLLQFFQS--PHTSLR-----------KLSLGSVNQFIM----LMPSALFVSMDQYLQGLFLLSNDP 233 (902)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l~~--~~~~vr-----------~~al~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~ 233 (902)
.+|....+.+.+.+.+++-. +....+ +.+++.+..+.. ..++.+.++++.++......+...
T Consensus 162 -~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~ 240 (947)
T COG5657 162 -ALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYS 240 (947)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhc
Confidence 11112223333334444322 111111 123343333332 234445566666676666655432
Q ss_pred CHHH-------------HHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCC-----CHHHHHHHHHHHHHhhccCC-
Q 002596 234 SAEV-------------RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEAQL- 294 (902)
Q Consensus 234 ~~~v-------------r~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~-----~~~v~~~al~~l~~l~~~~~- 294 (902)
++.. ....|..+..+...+|+.+.+++-..++.++..+.+- -+-+...++.++....+.+.
T Consensus 241 ~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~ir 320 (947)
T COG5657 241 NPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIR 320 (947)
T ss_pred chhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccH
Confidence 2222 2335667777777888888887777777766654431 23355667777777766421
Q ss_pred -chhhH----HhhhhhhHHHHH-hhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002596 295 -PHENL----KEFLPRLVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (902)
Q Consensus 295 -~~~~~----~~~l~~l~~~ll-~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r 368 (902)
..+.+ .....+++..++ ..+...++|.|.|+++|. ++++.. . ..+.+.++|
T Consensus 321 k~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~-------eyire~-----------s-----~~dye~~vr 377 (947)
T COG5657 321 KTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPL-------EYIREQ-----------S-----KTDYEVNVR 377 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHH-------HHHHhh-----------c-----cccchhhhh
Confidence 11111 224444555544 556667777888876653 233300 0 011234689
Q ss_pred HHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCC-chHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC--
Q 002596 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE-AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK-- 445 (902)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~-- 445 (902)
.++...+..+...+|+-+.+++...+.+....++.. ......+++...| +.......+-+...-......+.+.++
T Consensus 378 ~~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g-~g~~av~~~~~~v~~~~~~~~pd~~s~~~ 456 (947)
T COG5657 378 PCIENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFG-LGVEAVNRMVDFVKFLGSIIYPDLLSPNE 456 (947)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhcCccccCccc
Confidence 999999999999999666777777777777654100 0222223322222 222222222223333333344444443
Q ss_pred --ChHHHHH-HHHHHH-hhHHHHhhhhcCCcchhh-HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhcccchHhH
Q 002596 446 --FPLIRSI-SCWTLS-RFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAEELAPRL 518 (902)
Q Consensus 446 --~~~vr~~-a~~~l~-~~~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~~~~~p~l 518 (902)
+.+++.. +...+. +.--...+. ...++ -.+.+..+.....|.. -.+|.+....+..+.-. +....+-+
T Consensus 457 ~~~~ri~~~~i~~i~~~r~~l~~~~~----~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~-~~~~~~~l 531 (947)
T COG5657 457 IIHLRILRSRIAYILTFRNQLDSSEL----SESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS-VCSKIGLL 531 (947)
T ss_pred CceeEEehhccchheechhhhhhhhh----hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc-cccccccH
Confidence 2333222 211111 110000000 00011 1111222222222211 23344444333332211 22333345
Q ss_pred HHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhc
Q 002596 519 EIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALG 597 (902)
Q Consensus 519 ~~i~~~l~~~l~~~~~-~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g 597 (902)
++++-.+.+.+..... ..+..++++++.++...++... |....+++.+.+.|.... .++.....++-+-.-+.+.+
T Consensus 532 enl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~--pl~~~il~~L~~lv~~~~-knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 532 ENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIA--PLGSEILQLLDNLVEINA-KNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhh--hhHHHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHHHHH
Confidence 5666555666555433 4566788999999988888877 777888888888776544 23332222222222222333
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC-CC
Q 002596 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DA 676 (902)
Q Consensus 598 ~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~ 676 (902)
..+....+..+|.++..+...... ...|.-.++....+..++.+.+.++..+ +|. +...+..-..+ .-
T Consensus 609 ~~~~~~~~~~ip~l~~~l~p~~~~------l~~ed~~El~~~~lq~~s~l~e~f~~~~---lp~--v~~~l~q~~~~t~l 677 (947)
T COG5657 609 FLKSGMCEITIPTLVLALVPEFPV------LLSEDATELWSYVLQLLSILPEHFSGDV---LPS--VVKILRQPSLATEL 677 (947)
T ss_pred HhhhcccccchHHHHHhhCccchh------hhhhhHHHHHHHHHHHHhhcchhhcCCc---Cch--HHHHHhcccCchHH
Confidence 344444555566555444321000 0000011222223333333333333321 111 22121110101 11
Q ss_pred hHHHH---HHHHHHHHHHhhchHhhH-HhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhh--hhhhHHHHH
Q 002596 677 SDVRQ---SAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ--EISPIVMTV 750 (902)
Q Consensus 677 ~~vr~---~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~--~~~~~~~~i 750 (902)
...+. +.+.++.......+.-+. ..+..++..+...+.. +.-+..|..++........ ...||+..+
T Consensus 678 l~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~-------e~~~~~~f~~~~~v~~l~~~~i~~~~v~~i 750 (947)
T COG5657 678 LPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGS-------EPHDALCFLNLTVVETLYLENIYEPYVNLI 750 (947)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhc-------chHHHHHHhhHHHHHHhHHHHHHhhcHHHH
Confidence 11111 122222222211111111 1223344444444433 3445666666666554432 256888888
Q ss_pred HHHHHHhhcCChhhhhhHHHHHHHHHHHHhhh------cCCccCcCh--------HHHHHHHHHhccCCCCcHHHHHHHH
Q 002596 751 VLCLVPILKHSEELNKSLIENSAITLGRLAWV------CPELVSPHM--------EHFMQPWCIALSMIRDDTEKEDAFR 816 (902)
Q Consensus 751 l~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~~l--------~~~l~~~~~~l~~~~d~~e~~~~~~ 816 (902)
.-.++..+.++. .+......+..++++... +|+.+. .. ..++-.|.-.-....|.-+|+...-
T Consensus 751 ~~lll~rl~ns~--~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~-ki~q~k~i~i~~l~g~~Il~~~~i~~~~drKi~~i 827 (947)
T COG5657 751 FVLLLSRLKNSK--TERFVIKIIHVFSLVSFKDSLTVGCDNLIS-KINQTKNILIVQLYGNWILGFDEIHDSKDRKIHLI 827 (947)
T ss_pred HHHHHHHhhccc--chHHHHHhheeeEEechhhccccCChHHHH-HHHHHHHHHHHHHHhceeeccchhccHHHHHHHHH
Confidence 888888877765 344444444444544443 232221 11 1222223322223555667777788
Q ss_pred HHHHHHHcC
Q 002596 817 GLCAMVKAN 825 (902)
Q Consensus 817 ~l~~li~~~ 825 (902)
|+.+++..+
T Consensus 828 g~snllrt~ 836 (947)
T COG5657 828 GLSNLLRTL 836 (947)
T ss_pred hHHhhhhhc
Confidence 888888553
No 19
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.6e-16 Score=165.30 Aligned_cols=763 Identities=14% Similarity=0.121 Sum_probs=439.9
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHH
Q 002596 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (902)
Q Consensus 12 ~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~ 91 (902)
..+..+.+++....++.+.+....++++|+.++..|..|.+-..++.. +...++|.++|+.|.-.|+++|+..+++..
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~~~ 81 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPANEA 81 (982)
T ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChhHH
Confidence 357788889999988744338889999999999999999988888875 567788999999999999999999999999
Q ss_pred HHHHHHHhhhhh--cC-ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-Ch--hhhhHHHHHHHHHHhhchhc
Q 002596 92 QYIKSELLPCLG--AA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DI--NHMEGAMDALSKICEDIPQV 165 (902)
Q Consensus 92 ~~i~~~ll~~l~--~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~--~~r~~al~~L~~l~~~~~~~ 165 (902)
..++..++..+. ++ ...|-+..+..++.++-+.-++.||.-+..+..+++.. +| ..-..+...|..+ ...+..
T Consensus 82 ~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~L-s~~p~e 160 (982)
T KOG2022|consen 82 VQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVL-SFMPAE 160 (982)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHh-ccCcHh
Confidence 999999988764 32 33444444445555555556789999888888877653 22 1111122222222 222222
Q ss_pred ccc-CCC----CCC----CcchhhhHHHHHHHhcCCC---H-----HHHHHHHHHHHHHhcccchh---hHHhHHHHHHH
Q 002596 166 LDS-DVP----GLA----ECPINIFLPRLLQFFQSPH---T-----SLRKLSLGSVNQFIMLMPSA---LFVSMDQYLQG 225 (902)
Q Consensus 166 ~~~-~~~----~~~----~~~~~~l~~~l~~~l~~~~---~-----~vr~~al~~l~~~~~~~~~~---~~~~~~~~l~~ 225 (902)
+.. +.+ +++ .......++.+-..++..+ + -.+..|++|+..++.++.-. .......++..
T Consensus 161 ~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll~~ 240 (982)
T KOG2022|consen 161 FQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLLDV 240 (982)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 110 000 000 0111222333333333322 2 46888999999888743210 00000000000
Q ss_pred HH-------------------------------------------------H--------------hhCCCC--HHHHHH
Q 002596 226 LF-------------------------------------------------L--------------LSNDPS--AEVRKL 240 (902)
Q Consensus 226 l~-------------------------------------------------~--------------~~~~~~--~~vr~~ 240 (902)
+. + ...+++ ++.-..
T Consensus 241 l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~ 320 (982)
T KOG2022|consen 241 LGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIVT 320 (982)
T ss_pred HhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 00 0 000111 111111
Q ss_pred HHHHHHHHHhhChhhh---------hhhHHHHHHHHHhhhcCC-----CHHHHHHHHHHHHHhhcc---------CCchh
Q 002596 241 VCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKDT-----DDDVALEACEFWHSYFEA---------QLPHE 297 (902)
Q Consensus 241 ~~~~l~~l~~~~~~~~---------~~~l~~i~~~~~~~~~~~-----~~~v~~~al~~l~~l~~~---------~~~~~ 297 (902)
.+......+++....+ ..++..+++.++.+..-+ ++.+...++.||.++.+. +....
T Consensus 321 ~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~ 400 (982)
T KOG2022|consen 321 FLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQ 400 (982)
T ss_pred HHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchh
Confidence 2222222222211111 112223333333333221 345667788999988554 11222
Q ss_pred hH-HhhhhhhHHHHHhhccCChhhh-hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHH
Q 002596 298 NL-KEFLPRLVPVLLSNMIYADDDE-SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (902)
Q Consensus 298 ~~-~~~l~~l~~~ll~~l~~~~~d~-~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l 375 (902)
.+ ++...+++..++..+....++. ..|.++ +-+.+ -..|+.-.+++
T Consensus 401 i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~------------------------------s~e~F--~~YR~diSD~~ 448 (982)
T KOG2022|consen 401 ILSQQIYAQLVEILLKKLALPSKEIWLSWSSD------------------------------SREQF--ESYRKDISDLL 448 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHhccCCcc------------------------------hHHHH--HHHHHHHHHHH
Confidence 33 3778888888888887765432 223211 11111 14788888888
Q ss_pred HHHHhhcCcchhhhhHHHHHHhhccCC--CCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhh-ccCCCChHHHHH
Q 002596 376 DVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP-LLDDKFPLIRSI 452 (902)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~ 452 (902)
-..-..+|+.++..+...+.+++.+++ +..|..-++++..+..+++..++...+.++.++..... .+.-++|..-..
T Consensus 449 ~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~T 528 (982)
T KOG2022|consen 449 MSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLST 528 (982)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHH
Confidence 888888899888889999999988643 34599999999999999999888777887777765443 234468888999
Q ss_pred HHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhcc
Q 002596 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 453 a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~ 532 (902)
+...+|.++.|+.+ .+.++...++.++++++.+ ..-..+...+..+|+.|+..+.||.++++...-..+...
T Consensus 529 ss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 529 SSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHhc------CCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 99999999999985 5788999999999999854 344456677999999999999999999999888888753
Q ss_pred --chhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-------hhHHHHHHHHHHHhccccccc
Q 002596 533 --QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-------FPLLECFTSIAQALGAGFTQF 603 (902)
Q Consensus 533 --~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-------~~~l~~l~~i~~~~g~~f~~~ 603 (902)
....+..++.+||.+......+.. |+|+..++.+++..++..-..+.+. .-.+.|++.+...+-..
T Consensus 601 ~~~~S~~~klm~sIGyvls~~~pEe~-~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~---- 675 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLSRLKPEEI-PKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK---- 675 (982)
T ss_pred ccCchHHHHHHHHHHHHHHhccHHhH-HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC----
Confidence 234566789999998887764432 5899999988888776531111111 11223333333322110
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHH--HHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc--CCChHH
Q 002596 604 AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV--CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASDV 679 (902)
Q Consensus 604 ~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~--~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v 679 (902)
.. ..+.+..+-+..... +.+.++. .+++++.+.++ -...++
T Consensus 676 ---------------~~---~~d~d~~~~~~~~~qq~~il~v~~-----------------k~i~~~~kv~s~~~~~s~v 720 (982)
T KOG2022|consen 676 ---------------KD---IIDTDQPEQREEPFQQFPILQVLQ-----------------KAIPVFEKVLSMWLGLSDV 720 (982)
T ss_pred ---------------Cc---cccccchhhhccccccCCHHHHHH-----------------HHHHHHHHHHHHHhcchhH
Confidence 00 000000000000000 1111111 12222222211 123445
Q ss_pred HHHHHHHHHHHHhhchHhh-HHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh---hhhhhhH----HHHHH
Q 002596 680 RQSAFALLGDLARVCPVHL-QARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA---RQEISPI----VMTVV 751 (902)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~---~~~~~~~----~~~il 751 (902)
...++...+.=.+.....| .|.++.+.+.+.+..... ..+.-.++..+... ..+.+|- +...+
T Consensus 721 ve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~---------~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~ 791 (982)
T KOG2022|consen 721 VEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC---------LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAF 791 (982)
T ss_pred HHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch---------HHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 5555444443344444556 788888888888854433 22222222222111 1222222 22333
Q ss_pred HHHHHhhcCCh-hhhhhHHHHHHHHHHHHhhhcCCccCcC---hH-HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCc
Q 002596 752 LCLVPILKHSE-ELNKSLIENSAITLGRLAWVCPELVSPH---ME-HFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (902)
Q Consensus 752 ~~l~~~l~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~-~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p 826 (902)
+..+.++.... .-+.++.+..+.++..+.++.|+...+. .. .+++..+..|+..+... -+.+.+.+..++..-.
T Consensus 792 q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~-i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 792 QQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTT-IRAASQFLTALATYAT 870 (982)
T ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHHHhhcc
Confidence 34444444321 0156888889999999999999877652 22 34446666676644443 4456677777665533
Q ss_pred hhhhhhHHHHhhHhhc---------ccccCcHHHHHHHHHHHHHHHhhcC
Q 002596 827 SGALSSLVFMCRAIAS---------WHEIRSEELHNEVCQVLHGYKQMLR 867 (902)
Q Consensus 827 ~~~~~~l~~i~~~i~~---------~~~~~~~~~~~~~~~~l~~~~~~~~ 867 (902)
.....+...++.++.. ...-..-...+.+.++|..++..+.
T Consensus 871 s~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~k~~ 920 (982)
T KOG2022|consen 871 SHDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNAKFF 920 (982)
T ss_pred cchhHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHHhhh
Confidence 2223333333333311 1110112356778899988887664
No 20
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.89 E-value=9.6e-16 Score=158.10 Aligned_cols=504 Identities=15% Similarity=0.245 Sum_probs=309.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHH
Q 002596 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (902)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~ 93 (902)
++-+-++.+....+++. .+++|++-|.+|+..|+.|.-.-+||.. +..++.+..|.-+|...|..+|.-++.+.|..
T Consensus 13 iallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~G 89 (1053)
T COG5101 13 IALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQG 89 (1053)
T ss_pred HHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHH
Confidence 34455666677789988 9999999999999999999999999964 77899999999999999999999999999999
Q ss_pred HHHHHhhhhh--cCChHHHH-------HHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 94 IKSELLPCLG--AADRHIRS-------TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 94 i~~~ll~~l~--~~~~~vr~-------~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
||+-+++.+- +.+..+|. .+-.++..|++.++|..||+++|.|...-+ .+-.+.+..|.+|..+.++...
T Consensus 90 iRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 90 IRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHh
Confidence 9999998764 34555554 455667778899999999999999988665 5567778888888777776432
Q ss_pred ccccC--------CCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCH
Q 002596 165 VLDSD--------VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (902)
Q Consensus 165 ~~~~~--------~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (902)
.-..+ ..+.+...+++++..+.+.|.- .++..-.+.+..+..+.+++|-.+. ....++..+..... +.+
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~-s~p 246 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFN-SMP 246 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhc-cCC
Confidence 11000 0011112345566666666643 4788889999999999999884322 11122332222221 223
Q ss_pred HHHHHHHHHHHHHHhhC--hh-------hhhh---------------------------------hHHHHHHHH------
Q 002596 236 EVRKLVCAAFNLLIEVR--PS-------FLEP---------------------------------HLRNLFEYM------ 267 (902)
Q Consensus 236 ~vr~~~~~~l~~l~~~~--~~-------~~~~---------------------------------~l~~i~~~~------ 267 (902)
+.|...++||..++... |. .+.- ++..+..++
T Consensus 247 d~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~ 326 (1053)
T COG5101 247 DTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEV 326 (1053)
T ss_pred chhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHH
Confidence 44555555555544321 00 0000 011111110
Q ss_pred -Hhhhc--------------------CCCHHHHHHHHHHHHHhhcc--------C-----C-------------ch----
Q 002596 268 -LQVNK--------------------DTDDDVALEACEFWHSYFEA--------Q-----L-------------PH---- 296 (902)
Q Consensus 268 -~~~~~--------------------~~~~~v~~~al~~l~~l~~~--------~-----~-------------~~---- 296 (902)
+..+. -.+.++-..+++.|..++-. + . .+
T Consensus 327 ~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~ 406 (1053)
T COG5101 327 YISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDS 406 (1053)
T ss_pred HHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhc
Confidence 00011 11222334445555443211 0 0 00
Q ss_pred ------hhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 002596 297 ------ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (902)
Q Consensus 297 ------~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~ 370 (902)
......+.++.-.++..|...++-.- .++ |..+.+|.+. .|.| ...+-+.
T Consensus 407 ~~pLrkhiY~~ilsqLrlvlienMvrPEEVli-Ven-------degEivRefv-------------ketD---tI~lYks 462 (1053)
T COG5101 407 TKPLRKHIYIGILSQLRLVLIENMVRPEEVLI-VEN-------DEGEIVREFV-------------KETD---TIELYKS 462 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcceEEE-EEC-------CCcHHHHHHh-------------cccc---HhHHHHH
Confidence 00001111222222233332211000 000 0000011000 0011 1234455
Q ss_pred HHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHhh-----ccCC
Q 002596 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP-----LLDD 444 (902)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~-----~l~d 444 (902)
-..+|-.+....-++.-...+.-+-..+.+. .+.|..-..-++++|+++....+... .++-.++..++. .-+|
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKd 541 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKD 541 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5556655555544433333444444444433 23388888999999999987776553 566666666554 4467
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--------cchH
Q 002596 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--------ELAP 516 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~--------~~~p 516 (902)
....|.+.....+|++-.++.. ...++..++..+++.++..+..|+..||..+-.+++.|+- .-.|
T Consensus 542 nKAVvASnIMyvvGQYpRFLka------hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEp 615 (1053)
T COG5101 542 NKAVVASNIMYVVGQYPRFLKA------HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEP 615 (1053)
T ss_pred cchhhecceeeeeccchHHHHH------HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCc
Confidence 7778888888999999998864 5788999999999999999999999999999999999853 2367
Q ss_pred hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 517 ~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
|+..|+..+-+.-.+-+..-....++|.+.++...+..
T Consensus 616 FI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 616 FIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred HHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchh
Confidence 88888777766665555556667889999888766544
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2.2e-17 Score=169.55 Aligned_cols=664 Identities=15% Similarity=0.151 Sum_probs=426.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-c-CCC-hHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh------hhc
Q 002596 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q-FPD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT------AYK 84 (902)
Q Consensus 14 ~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~-~-~p~-~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~------~w~ 84 (902)
...+..+|-...++++. -|+.+...|..-. + -|. ...-++-++.+. +.++.-|+.-.-++-+.+-. .|.
T Consensus 167 Er~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r-~LeDqerhl~vk~idr~Ly~lddl~~pyv 244 (975)
T COG5181 167 ERDVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMSR-ELEDQERHLVVKLIDRLLYGLDDLKVPYV 244 (975)
T ss_pred hHhHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhhhhhHhHHHHHHHHHHhcccccccce
Confidence 34577788888888888 8999888885433 2 233 223344555433 56777888877777666522 121
Q ss_pred c----------CCHhH------HHHHHHHHhh-hh-----------hcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHH
Q 002596 85 S----------MSPSN------QQYIKSELLP-CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQAL 136 (902)
Q Consensus 85 ~----------l~~~~------~~~i~~~ll~-~l-----------~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L 136 (902)
+ +.++. ++.|.+..-. +| .+.++.||+..+.+++.+++.. .-++++|+|
T Consensus 245 hkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl 321 (975)
T COG5181 245 HKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFL 321 (975)
T ss_pred eeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHH
Confidence 1 22222 1112211111 22 2358899999999999999876 457899999
Q ss_pred HHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhh
Q 002596 137 VTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL 215 (902)
Q Consensus 137 ~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~ 215 (902)
...+.|. ++..|+.++++..+||+..+-..- .++..++..+-.++.|.+..||..+..++..+.+...+.-
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l--------~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg 393 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRL--------SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG 393 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHH--------hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc
Confidence 9999887 889999999999999997765432 2456778888888999999999999999999988776666
Q ss_pred HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCC
Q 002596 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL 294 (902)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~-~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 294 (902)
...|+.++..|..-++..........+++.+.++. ..|++...+-...+..++..++++|++.....+.+...+.+...
T Consensus 394 ie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 394 IEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC
Confidence 67788888888876644333344444555544443 24566666677888888888898888877776666666655421
Q ss_pred chhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHH
Q 002596 295 PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAA 374 (902)
Q Consensus 295 ~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~ 374 (902)
. .-..+.+++.|.+++. ++.+... + |- .. -+....+
T Consensus 474 ~--tp~~lr~~v~pefF~~----------------------------fw~rr~A-~-dr---------~~---~k~v~~t 509 (975)
T COG5181 474 D--TPWKLRDQVSPEFFSP----------------------------FWRRRSA-G-DR---------RS---YKQVVLT 509 (975)
T ss_pred C--CHHHHHHhhcHHhhch----------------------------HHHhhhc-c-cc---------cc---cceeehh
Confidence 1 1111223333333221 1110000 0 00 00 0001111
Q ss_pred HHHHHhhcCc-chh------------------hhhHHHHHHhhccCCCCchHHH------HHHHHHHHH-----------
Q 002596 375 LDVLSNVFGD-EIL------------------PTLMPVIQAKLSASGDEAWKDR------EAAVLALGA----------- 418 (902)
Q Consensus 375 l~~l~~~~~~-~~~------------------~~l~~~l~~~l~~~~~~~~~~r------~~a~~~l~~----------- 418 (902)
-..+++..|+ .+. ..+...+...+...+ ...| .+.+.++..
T Consensus 510 tvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~---~dErleerl~d~il~Afqeq~~t~~~il~~ 586 (975)
T COG5181 510 TVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLG---FDERLEERLYDSILNAFQEQDTTVGLILPC 586 (975)
T ss_pred HHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHhccccccEEEec
Confidence 1222333332 111 111222222221111 1111 122222211
Q ss_pred ---HHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHH
Q 002596 419 ---IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (902)
Q Consensus 419 ---l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v 495 (902)
+.....-..++|++.++..+++.|+++.|.||..|+...|.++..+... ...+.+..+=..|.+.+....+.|
T Consensus 587 f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c----~e~~~l~klg~iLyE~lge~ypEv 662 (975)
T COG5181 587 FSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC----GETKELAKLGNILYENLGEDYPEV 662 (975)
T ss_pred ccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc----chHHHHHHHhHHHHHhcCcccHHH
Confidence 0000011236899999999999999999999999999999999887643 123445556666778888888999
Q ss_pred HHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhc
Q 002596 496 QEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 496 ~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~ 574 (902)
-.....|+..+.... -..+.|-+..|+|.|...|.+...++.......++.++...++...-.+|+..... |++.+++
T Consensus 663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lks 741 (975)
T COG5181 663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFE-LVDSLKS 741 (975)
T ss_pred HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHH
Confidence 888888888887766 45688889999999999999988888888889999999877665542345544443 4445554
Q ss_pred CCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhh
Q 002596 575 LPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS 653 (902)
Q Consensus 575 ~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~ 653 (902)
. ++++ ..+.+++|.|++++|+. .++..+++-|+.. |...+.|..-+++.+++..|.
T Consensus 742 ~---nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLkvq--------------eRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 742 W---NKEIRRNATETFGCISRAIGPQ------DVLDILLNNLKVQ--------------ERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred h---hHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcchHH--------------HHHhhhhhhhhhhhhHhhcCc
Confidence 2 3444 67899999999999973 4445454444421 566777776677777776664
Q ss_pred hHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHH
Q 002596 654 GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIG 733 (902)
Q Consensus 654 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg 733 (902)
. .++|.++.-...++..|.+..+..++-+.++.++.-..|+-.+.|.+...+.+. ++.-|+.|...+.
T Consensus 799 f--------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr----D~vhRqta~nvI~ 866 (975)
T COG5181 799 F--------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR----DPVHRQTAMNVIR 866 (975)
T ss_pred h--------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc----chHHHHHHHHHHH
Confidence 2 377888776777778888988999999999999888899999999999999988 6788999999999
Q ss_pred HHHHhhhhh-hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHh
Q 002596 734 ELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (902)
Q Consensus 734 ~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (902)
.++..++.. -....-.++..|.+-+-++. +++.+..-.++..+.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~s---Phvi~~~~Eg~e~~~ 911 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPS---PHVIQSFDEGMESFA 911 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCC---cHHHHHHHHHHHHHH
Confidence 988776421 11222233445555454553 344444444443333
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=5e-17 Score=195.83 Aligned_cols=741 Identities=13% Similarity=0.102 Sum_probs=448.7
Q ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhc-C----------CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 002596 14 FNEICRLLEQQISP--SSTADKSQIWQQLQQYSQ-F----------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR 80 (902)
Q Consensus 14 ~~~~~~~l~~~~s~--~~~~~r~~a~~~L~~~~~-~----------p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~ 80 (902)
..++..+++.+.++ +.+ .|++|...|..+.+ + .++++.|..+|. +.+..+|..|+-.|.+.-.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~-~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~---sg~~~vk~nAaaaL~nLS~ 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQ-EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR---SGTLGAKVNAAAVLGVLCK 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHH-HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhc
Confidence 34577777777755 456 88888888887654 2 456777888886 3568888887756554421
Q ss_pred hhhccCCHhHHH-----HHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcC-cCch------HHHHHHHHHHhccCC---h
Q 002596 81 TAYKSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGW------LELLQALVTCLDSND---I 145 (902)
Q Consensus 81 ~~w~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~-~~~w------~~ll~~L~~~l~~~~---~ 145 (902)
.++.+. .....|+..|.+.+...|..++.++..++.... .+.| +..+|.|..++++++ .
T Consensus 88 ------~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 88 ------EEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred ------CHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 122222 223456778888899999999999999987532 2223 456788888888764 2
Q ss_pred hhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhH-HHHHH
Q 002596 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQ 224 (902)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~ 224 (902)
.+++.+..+|..++..-...... -.-...+|.++.+++++++.++..|+.++..++...++.....+ ...++
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~-------IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP 234 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSA-------TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK 234 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHH-------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 34556678888887643321100 00134789999999999999999999998888765443221111 13467
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhhhHH-HHHHHHHhhhcCC---------CHHHHHHHHHHHHHhhccC
Q 002596 225 GLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDT---------DDDVALEACEFWHSYFEAQ 293 (902)
Q Consensus 225 ~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~---------~~~v~~~al~~l~~l~~~~ 293 (902)
.+..++.+ ++..+|..+..+|..++...++.-....+ ..++.+++.+... ....+..|...+..++..
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg- 313 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG- 313 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-
Confidence 88888854 55689999999999998754443221111 2233333333322 234578888888888765
Q ss_pred CchhhHHhhhhhhHHHHHhhccCChhhhh-----hh-------hh-hccCCCCCCCCCCCcccc-cc--cCCCCCCCCCC
Q 002596 294 LPHENLKEFLPRLVPVLLSNMIYADDDES-----LV-------EA-EEDESLPDRDQDLKPRFH-SS--RLHGSENPEDD 357 (902)
Q Consensus 294 ~~~~~~~~~l~~l~~~ll~~l~~~~~d~~-----~~-------~~-~~~~~~~~~~~~i~p~~~-~~--~~~~~~~~~~d 357 (902)
. +.+++.|...+.. ..|.. .| .. ++++. ..-+.|.-. .. +.- .. .
T Consensus 314 -~--------~~ll~~L~~ll~s-~rd~~~~ada~gALayll~l~d~~~~~----~~~i~~~~v~~~LV~Ll--r~---k 374 (2102)
T PLN03200 314 -M--------SALILYLGELSES-PRSPAPIADTLGALAYALMVFDSSAES----TRAFDPTVIEQILVKLL--KP---R 374 (2102)
T ss_pred -c--------hhhHHHHHHhhcc-cchHHHHHHHHhhHHHHHHhcCCchhh----hhhccccccHHHHHHHh--CC---C
Confidence 1 1222222221111 11100 00 00 00000 000000000 00 000 00 0
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCcchh------hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhH
Q 002596 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEIL------PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (902)
Q Consensus 358 d~d~~~~~~~r~~a~~~l~~l~~~~~~~~~------~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l 431 (902)
+ .. -+...+..+ ++..+|...+ ....+.+..++...+ ...+..++.+|..++.+..+......
T Consensus 375 ~--p~---~vqe~V~eA---Lasl~gN~~l~~~L~~~daik~LV~LL~~~~---~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 375 D--TK---LVQERIIEA---LASLYGNAYLSRKLNHAEAKKVLVGLITMAT---ADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred C--Cc---hhHHHHHHH---HHHhcCChHHHHHHHhccchhhhhhhhccCC---HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0 00 001111222 2222222111 122344555666666 78999999999999977554333222
Q ss_pred HH-HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002596 432 SE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (902)
Q Consensus 432 ~~-i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (902)
.. .+|.+++.|.++++.+|..|+|+++.++..-... ...-.-...+|.+++.|..++..+|+.|+++|.+++.+
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden----r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~- 518 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES----KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH- 518 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-
Confidence 22 6889999999999999999999999998633211 00111246789999999999999999999999999863
Q ss_pred cccchHhH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHH
Q 002596 511 AEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLE 587 (902)
Q Consensus 511 ~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~ 587 (902)
.+.....+ ...++.|+++|++.+.+.+..+..+|..++..... . .++.+...+.. +++.. ..+++
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~----~I~~Lv~LLls---dd~~~~~~aL~ 586 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----A----TISQLTALLLG---DLPESKVHVLD 586 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----h----HHHHHHHHhcC---CChhHHHHHHH
Confidence 22233333 24677888899888888888999999988764322 1 23455555543 23333 56777
Q ss_pred HHHHHHHHhccc-cc-cc--cHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccch
Q 002596 588 CFTSIAQALGAG-FT-QF--AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (902)
Q Consensus 588 ~l~~i~~~~g~~-f~-~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (902)
.++.+....... +. .- ....++.+.++++.. +.+....|..+++.++..-.......+.. .
T Consensus 587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--------------s~~ikk~Aa~iLsnL~a~~~d~~~avv~a-g 651 (2102)
T PLN03200 587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--------------KEETQEKAASVLADIFSSRQDLCESLATD-E 651 (2102)
T ss_pred HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--------------CHHHHHHHHHHHHHHhcCChHHHHHHHHc-C
Confidence 777775533321 11 00 123455565555531 34556667777777776544434444333 3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHh-hHHhHH-HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhh
Q 002596 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ 741 (902)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~-~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~ 741 (902)
.++.+...+++.+.+++..+...|+.+....... ...+.. ..+|.+++.+..+ +..+++.|+.+|+.++.....
T Consensus 652 aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~----d~~v~e~Al~ALanLl~~~e~ 727 (2102)
T PLN03200 652 IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS----SIEVAEQAVCALANLLSDPEV 727 (2102)
T ss_pred CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC----ChHHHHHHHHHHHHHHcCchH
Confidence 5666677788888999999999999999754433 223333 4788899999887 678999999999999976542
Q ss_pred hhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCcc-C-cCh--HHHHHHHHHhccCCCCcHHHH--HHH
Q 002596 742 EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV-S-PHM--EHFMQPWCIALSMIRDDTEKE--DAF 815 (902)
Q Consensus 742 ~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~-~~l--~~~l~~~~~~l~~~~d~~e~~--~~~ 815 (902)
...-.-...++.|+.++...+ ...|++|+.++.++...+|..- . .++ ...+..++..|.. .|.+... .+.
T Consensus 728 ~~ei~~~~~I~~Lv~lLr~G~---~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~~~~~~al 803 (2102)
T PLN03200 728 AAEALAEDIILPLTRVLREGT---LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDSSATSEAL 803 (2102)
T ss_pred HHHHHhcCcHHHHHHHHHhCC---hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcchhhHHHHH
Confidence 211122456788889998775 7899999999999999877321 1 111 2345666666665 3333333 478
Q ss_pred HHHHHHHHc-------C-chhhh----hhHHHHhhHhhc
Q 002596 816 RGLCAMVKA-------N-PSGAL----SSLVFMCRAIAS 842 (902)
Q Consensus 816 ~~l~~li~~-------~-p~~~~----~~l~~i~~~i~~ 842 (902)
.++..+.+. + |-.++ ..+..++.++++
T Consensus 804 ~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~ 842 (2102)
T PLN03200 804 EALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE 842 (2102)
T ss_pred HHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc
Confidence 888888875 1 22222 567777777744
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=5.6e-17 Score=195.41 Aligned_cols=720 Identities=15% Similarity=0.099 Sum_probs=427.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcC---------CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhh-----hccCCHhHH
Q 002596 26 SPSSTADKSQIWQQLQQYSQF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-----YKSMSPSNQ 91 (902)
Q Consensus 26 s~~~~~~r~~a~~~L~~~~~~---------p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~-----w~~l~~~~~ 91 (902)
+++.. .|..|-..|..+..+ ++.+..|+.+|. +.+.+.|..|+-.|.+.-... |..+- ..
T Consensus 69 sg~~~-vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~---sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~--v~ 142 (2102)
T PLN03200 69 SGTLG-AKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLK---SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIF--ST 142 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHH---CCCHHHHHHHHHHHHHHHcCcchhhhhhhhh--hh
Confidence 45555 777766666655432 567788889886 347899999998887654321 11100 01
Q ss_pred HHHHHHHhhhhhcC---ChHHHHHHHHHHHHHHhhcCcCchHH-----HHHHHHHHhccCChhhhhHHHHHHHHHHhhch
Q 002596 92 QYIKSELLPCLGAA---DRHIRSTVGTIVSVVVQLGGIAGWLE-----LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 92 ~~i~~~ll~~l~~~---~~~vr~~~a~~l~~i~~~~~~~~w~~-----ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
......|+..+.++ +..++..+..++..++... .+.|.. .+|.+...++++++..+..|..+|..++....
T Consensus 143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e 221 (2102)
T PLN03200 143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFE 221 (2102)
T ss_pred cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 23345667777764 3446777777888888654 556655 57889999999999999999999888876544
Q ss_pred hccccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccchhhHHhHH--HHHHHHHHhhCCCC------
Q 002596 164 QVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPS------ 234 (902)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~------ 234 (902)
+... .. .-...+|.+++++++ .++.+|..|..+|..+....++ ....+- .-++.|..++..++
T Consensus 222 e~~~-aV------IeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~ 293 (2102)
T PLN03200 222 SSIS-KV------LDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE-AKQAIADAGGIPALINATVAPSKEFMQG 293 (2102)
T ss_pred HHHH-HH------HHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhcc
Confidence 3211 00 013568999999976 5679999999999998875332 222211 12455555554333
Q ss_pred ---HHHHHHHHHHHHHHHhhChhhhhhhHHHHH----------------HHHHhhhcCCCHHHHH----HHHHHHHHhhc
Q 002596 235 ---AEVRKLVCAAFNLLIEVRPSFLEPHLRNLF----------------EYMLQVNKDTDDDVAL----EACEFWHSYFE 291 (902)
Q Consensus 235 ---~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~----------------~~~~~~~~~~~~~v~~----~al~~l~~l~~ 291 (902)
...++.+..+|..++...+. +.+++..++ .+++......++..+. .++..+..+++
T Consensus 294 ~~~~~Lqe~AvwALsNIcgg~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 294 EFAQALQENAMGALANICGGMSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred ccchHHHHHHHHHHHHHhCCchh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 34578889999888865433 222322211 1122222222222221 22344555555
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002596 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (902)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a 371 (902)
++... . ....+.+.+...+....- -..+.+ . +-+++. ...- .- .+ -.++..+
T Consensus 373 ~k~p~-~---vqe~V~eALasl~gN~~l-~~~L~~-~--------daik~L-V~LL----~~---~~------~evQ~~A 424 (2102)
T PLN03200 373 PRDTK-L---VQERIIEALASLYGNAYL-SRKLNH-A--------EAKKVL-VGLI----TM---AT------ADVQEEL 424 (2102)
T ss_pred CCCCc-h---hHHHHHHHHHHhcCChHH-HHHHHh-c--------cchhhh-hhhh----cc---CC------HHHHHHH
Confidence 42111 0 011122222110110000 000000 0 000000 0000 00 00 1267888
Q ss_pred HHHHHHHHhhcCc---ch-hhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCC
Q 002596 372 AAALDVLSNVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKF 446 (902)
Q Consensus 372 ~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~ 446 (902)
..+|..++..-.+ .+ -...+|.+.++|.+++ ...++.|+.+++.++.+..+...... ...+|.+.+.|.+++
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 8888887755322 11 1235678888888887 88999999999999976654332222 237889999999999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHH
Q 002596 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (902)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~ 524 (902)
+.+|..|+|++++++.+-.+ ....+ ..+++.+++.+.+.++++|..|+++|.+++...... .++.
T Consensus 502 ~~iqeeAawAL~NLa~~~~q------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~~ 568 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSED------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TISQ 568 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHH------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHHH
Confidence 99999999999999874221 22223 257889999999999999999999999998764332 3344
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHHhcccCCchh--hhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccc-
Q 002596 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPV--YLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT- 601 (902)
Q Consensus 525 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~- 601 (902)
++.++...+...+..++++++.+....+....... -...-+|.|.+.+++. ++.....+..+++.++..-.....
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~a 646 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCES 646 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHH
Confidence 56667766667777788888887664433210000 0124567777777753 222225566777766642211000
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHH
Q 002596 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVR 680 (902)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr 680 (902)
-.....++.++..+... +.+.+..+..+++.++...... ...++.. ..++.|...+++.+.+++
T Consensus 647 vv~agaIpPLV~LLss~--------------~~~v~keAA~AL~nL~~~~~~~q~~~~v~~-GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 647 LATDEIINPCIKLLTNN--------------TEAVATQSARALAALSRSIKENRKVSYAAE-DAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHcCCHHHHHHHHhcC--------------ChHHHHHHHHHHHHHHhCCCHHHHHHHHHc-CCHHHHHHHHhCCChHHH
Confidence 11223456666666642 3345555667777777643222 1223332 356667888888999999
Q ss_pred HHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hh-hhhHH--HHHHHHHHH
Q 002596 681 QSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QE-ISPIV--MTVVLCLVP 756 (902)
Q Consensus 681 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~-~~~~~--~~il~~l~~ 756 (902)
+.++..++.++........-.-...++.+.+.++.. +..+|++|+|+|.+++.+.+ ++ +..++ ..++..|+.
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G----~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~ 787 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG----TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD 787 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC----ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH
Confidence 999999999998764322111245678888888887 67999999999999998776 22 43333 345677888
Q ss_pred hhcCChhhhhhHHHHHHHHHHHHhhh-cCCcc-CcC------hHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchh
Q 002596 757 ILKHSEELNKSLIENSAITLGRLAWV-CPELV-SPH------MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSG 828 (902)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~-~~~------l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~ 828 (902)
+|+..+. .....-.+..+++.+++. ..... .|. .+.=+.++...+.. +...-.+.+++.|..+.+..|..
T Consensus 788 ~L~~~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~-~~p~~~~kai~il~~~~~~~~~~ 865 (2102)
T PLN03200 788 LLNSTDL-DSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE-GHPLVQDKAIEILSRLCRDQPVV 865 (2102)
T ss_pred HHhcCCc-chhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc-CChHHHHHHHHHHHHHhccChhH
Confidence 8877652 222222377777777763 11111 111 12234555555633 44455667888888887777754
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.86 E-value=6.4e-15 Score=154.76 Aligned_cols=638 Identities=16% Similarity=0.173 Sum_probs=397.4
Q ss_pred CChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002596 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (902)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (902)
++...|-.--.+|+++++.. .....+..+..-+.+.++-+|.....+.+.++..++ ++.++|.
T Consensus 453 ed~yar~egreIisnLakaa---Gla~mistmrpDidn~deYVRnttarafavvasalg--------------ip~llpf 515 (1172)
T KOG0213|consen 453 EDYYARVEGREIISNLAKAA---GLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG--------------IPALLPF 515 (1172)
T ss_pred chHHHhhchHHHHHHHHHHh---hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC--------------cHHHHHH
Confidence 34444444444555555442 222333333344455677889888888888777543 2778898
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHH
Q 002596 185 LLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (902)
Q Consensus 185 l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i 263 (902)
|-..+.+. +++-|+.+++|...+...+.-...+++..++..+-..+.|.+..+|.-+..++..+++....+=...++.+
T Consensus 516 Lkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 516 LKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 88888886 99999999999999998888888899999899888889898889999999999999998777666678888
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhh-hhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcc
Q 002596 264 FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (902)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~-~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~ 342 (902)
+..+++.........-..-+..++.++-. .......|+. .++-.+.......
T Consensus 596 lkpLwkgir~hrgk~laafLkAigylipl--md~eya~yyTrevmlil~rEf~sP------------------------- 648 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGKELAAFLKAIGYLIPL--MDAEYASYYTREVMLILIREFGSP------------------------- 648 (1172)
T ss_pred HHHHHHHHHHccChHHHHHHHHHhhcccc--ccHHHHHHhHHHHHHHHHHhhCCC-------------------------
Confidence 88777765432221111112222222211 1111112222 2222222211111
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc---chhhhhHHHHHHhhccCCCCchHHHHHH-------
Q 002596 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAA------- 412 (902)
Q Consensus 343 ~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~~a------- 412 (902)
|| ...+.....+..++..-|- .+-..++|.+...+ |..|.+.
T Consensus 649 ---------------De------emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f-------w~rrmA~drr~ykq 700 (1172)
T KOG0213|consen 649 ---------------DE------EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF-------WGRRMALDRRNYKQ 700 (1172)
T ss_pred ---------------hH------HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh-------hhhhhhccccchhh
Confidence 11 1456677777777776653 22233444333222 5444332
Q ss_pred -HHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC
Q 002596 413 -VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (902)
Q Consensus 413 -~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (902)
...-..++... -...++..++.-+.|..+.-|.....++.++...+... ......-+.++..++-.++..
T Consensus 701 lv~ttv~ia~Kv------G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~---diderleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 701 LVDTTVEIAAKV------GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA---DIDERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred HHHHHHHHHHHh------CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc---cccHHHHHHHHHHHHHHHHhc
Confidence 01111222211 11335777777889999999999999998887766532 223444556777777777654
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002596 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (902)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~ 571 (902)
...+. -....++.++..++..+.||+++|+..++..|++...+++..+.+.++.++..+...-. +.+|..+-..
T Consensus 772 tt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-----e~~m~~lGvv 845 (1172)
T KOG0213|consen 772 TTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-----EKLMGHLGVV 845 (1172)
T ss_pred ccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-----HHHHHHhhHH
Confidence 33322 23456778888888899999999999999999999999999999999998886654321 2233333332
Q ss_pred H-hcCCCCCcch-hhHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHH
Q 002596 572 W-QQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (902)
Q Consensus 572 l-~~~~~~~~~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~ 648 (902)
+ +..+.+.+++ ..++.++-.|...+|. ...|-+..++|++..+|.+..+ .+.+.++++++.++
T Consensus 846 LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrhe--------------KVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 846 LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHE--------------KVQENCIDLVGTIA 911 (1172)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHH--------------HHHHHHHHHHHHHH
Confidence 2 3344456665 6778888888888886 6778889999999999987542 34556777777776
Q ss_pred HHHhhhHHhhhccchHHHHH---HHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHh
Q 002596 649 EGLGSGIESLVAQSNLRDML---LQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVA 725 (902)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~ 725 (902)
..-.+ |++....+.+. +..+....-++|.+|...+|.+++..|. .+++..++.+|... .-..|
T Consensus 912 drgpE----~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvq----eRq~R 977 (1172)
T KOG0213|consen 912 DRGPE----YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQ----ERQNR 977 (1172)
T ss_pred hcCcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHH----HHHhc
Confidence 65332 33321233332 2334455678999999999999998774 25667777777654 12333
Q ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCC
Q 002596 726 NNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMI 805 (902)
Q Consensus 726 ~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~ 805 (902)
-....+++..+..++ || .+++.|.+=...|+ ..+......+++.+-.+-.+.-..|+-.+.|.+-.+|-+
T Consensus 978 vcTtvaIaIVaE~c~----pF--tVLPalmneYrtPe---~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD- 1047 (1172)
T KOG0213|consen 978 VCTTVAIAIVAETCG----PF--TVLPALMNEYRTPE---ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD- 1047 (1172)
T ss_pred hhhhhhhhhhhhhcC----ch--hhhHHHHhhccCch---hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc-
Confidence 344456666666554 33 24666666666664 455566666666666554444445777777877777765
Q ss_pred CCcHHHHHHHHHHHHHHHcCch--hhhhhHHHHhhHhhccccc--CcHHHHHHHHHHHHHHHhhcChhh
Q 002596 806 RDDTEKEDAFRGLCAMVKANPS--GALSSLVFMCRAIASWHEI--RSEELHNEVCQVLHGYKQMLRNGA 870 (902)
Q Consensus 806 ~d~~e~~~~~~~l~~li~~~p~--~~~~~l~~i~~~i~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 870 (902)
.|..-|..+...+..+.-. +. ++...+..+++.+ |.+. +.+-+-+.+..-+.+++.++|+..
T Consensus 1048 rD~vhRqta~~~I~Hl~Lg-~~g~g~eda~iHLLN~i--WpNIle~sPhviqa~~e~~eg~r~~Lg~~~ 1113 (1172)
T KOG0213|consen 1048 RDLVHRQTAMNVIKHLALG-VPGTGCEDALIHLLNLI--WPNILETSPHVIQAFDEAMEGLRVALGPQA 1113 (1172)
T ss_pred ccHHHHHHHHHHHHHHhcC-CCCcCcHHHHHHHHHHh--hhhhcCCChHHHHHHHHHHHHHHHHhchHH
Confidence 5555566665555555443 43 3334444444443 2211 233466677777888888888633
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.9e-17 Score=187.10 Aligned_cols=533 Identities=15% Similarity=0.159 Sum_probs=343.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChh--hhhhhHHHHHHHHHhhhcCCCHHHHHH---HHHHHHHhhccCCc
Q 002596 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS--FLEPHLRNLFEYMLQVNKDTDDDVALE---ACEFWHSYFEAQLP 295 (902)
Q Consensus 221 ~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~l~~i~~~~~~~~~~~~~~v~~~---al~~l~~l~~~~~~ 295 (902)
.++..+.....++++..|++.|-.|..++..... ...-+.++|.......+.|.|+-++.. .+.....+.....
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~- 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL- 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh-
Confidence 4567777788899999999999999888775542 223355666666666677776544433 3444444443311
Q ss_pred hhhHHhhhhhhHHHHHhhc---cCChhhhhhhhhhccCCCCCCCCCCCcccccccCC-CCCCCCCCCccccccccHHHHH
Q 002596 296 HENLKEFLPRLVPVLLSNM---IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH-GSENPEDDDDDIVNVWNLRKCS 371 (902)
Q Consensus 296 ~~~~~~~l~~l~~~ll~~l---~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~-~~~~~~~dd~d~~~~~~~r~~a 371 (902)
-+..++.++..+...= ....+|-+.|+ ..... ++++ . ....
T Consensus 897 ---k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq-------------------~G~Lg~Tp~G------g-------~isT 941 (1702)
T KOG0915|consen 897 ---KKSLVDSLVNTLTGGKRKAIKVSEETELFQ-------------------EGTLGKTPDG------G-------KIST 941 (1702)
T ss_pred ---HHHHHHHHHHHHhccccccceeccchhccc-------------------CCcCCCCCCC------C-------cchH
Confidence 1122333333332200 00011111121 11000 0000 0 1234
Q ss_pred HHHHHHHHhhcCcchhhhhHHHHHHhhcc-CCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHH
Q 002596 372 AAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIR 450 (902)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 450 (902)
.+-|-.++.-+|+ |.++--+-++-++ .. |..|.+|.+.+|.|+....+.+.||++.++|.++..--||++.|+
T Consensus 942 YKELc~LASdl~q---PdLVYKFM~LAnh~A~---wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 942 YKELCNLASDLGQ---PDLVYKFMQLANHNAT---WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred HHHHHHHHhhcCC---hHHHHHHHHHhhhhch---hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 4556666666665 2222222233333 34 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHH
Q 002596 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAF 529 (902)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l 529 (902)
.+-...-+.+...-.. ....|+.+++..|+..+.+..+|||+++|.|+..++..- .+.+...++.+...+++.+
T Consensus 1016 ~aM~sIW~~Li~D~k~-----~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvm 1090 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKK-----VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVM 1090 (1702)
T ss_pred HHHHHHHHHhccChHH-----HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 9876666655544332 267899999999999999999999999999999999865 3556788999999999999
Q ss_pred hccchhhHHH---HHHHHHHHHHHhcccCC---chhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcccccc
Q 002596 530 GKYQRRNLRI---VYDAIGTLADAVGFELN---QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQ 602 (902)
Q Consensus 530 ~~~~~~~~~~---~~~al~~l~~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~ 602 (902)
++.++.++.. +..+++.++..+.+... ..+.++.++|.+++.=. ...-+++ ...+.++..+++..|..+.|
T Consensus 1091 DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gi--ms~v~evr~~si~tl~dl~Kssg~~lkP 1168 (1702)
T KOG0915|consen 1091 DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGI--MSKVNEVRRFSIGTLMDLAKSSGKELKP 1168 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHhchhhhcc
Confidence 9988888775 45666666654443221 23678888887765211 0112233 45788899999999999999
Q ss_pred ccHHHHHHHHHHHHHHHH-------HhhcccccCCCCchhH----HHH------HhhhHHHHHHHHhhhHHhhhccchHH
Q 002596 603 FAQPVFQRCINIIQTQQL-------AKVDSVAAGAQYDKEF----VVC------CLDLLSGLAEGLGSGIESLVAQSNLR 665 (902)
Q Consensus 603 ~~~~i~~~l~~~l~~~~~-------~~~~~~~~~~e~d~~~----~~~------al~~l~~l~~~~~~~~~~~~~~~~l~ 665 (902)
|+++++|.++.....-.. .+..+ .+.+. |.. .++++..++..+.... + ..+.
T Consensus 1169 ~~~~LIp~ll~~~s~lE~~vLnYls~r~~~------~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v---L--eeli 1237 (1702)
T KOG0915|consen 1169 HFPKLIPLLLNAYSELEPQVLNYLSLRLIN------IETEALDTLRASAAKSSPMMETINKCINYIDISV---L--EELI 1237 (1702)
T ss_pred hhhHHHHHHHHHccccchHHHHHHHHhhhh------hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH---H--HHHH
Confidence 999999999887553211 00000 01111 110 1222222222222111 1 1244
Q ss_pred HHHHHHhcC-CChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hhh
Q 002596 666 DMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEI 743 (902)
Q Consensus 666 ~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~ 743 (902)
|-+.+.++. -.-..|..+..++.-++..++..+.||..+++..++..+.+. |..+|...+.|.|.++.... +++
T Consensus 1238 p~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR----Nesv~kafAsAmG~L~k~Ss~dq~ 1313 (1702)
T KOG0915|consen 1238 PRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR----NESVRKAFASAMGYLAKFSSPDQM 1313 (1702)
T ss_pred HHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc----cHHHHHHHHHHHHHHHhcCChHHH
Confidence 444444332 223346677888999999999999999999999999999987 88999999999999998775 467
Q ss_pred hhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Q 002596 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVK 823 (902)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~ 823 (902)
+.++...+..+. ... ++.+..+|.++..+..+.++.+..|...++|..+-.+.. ++.++..-++-++.-+-
T Consensus 1314 qKLie~~l~~~l---~k~----es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e--e~Ka~q~Lw~dvW~e~v 1384 (1702)
T KOG0915|consen 1314 QKLIETLLADLL---GKD----ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHE--EEKANQELWNDVWAELV 1384 (1702)
T ss_pred HHHHHHHHHHHh---ccC----CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhC
Confidence 777776665443 322 233366677777788888888888899999988876654 23334455555554444
Q ss_pred cCc
Q 002596 824 ANP 826 (902)
Q Consensus 824 ~~p 826 (902)
...
T Consensus 1385 sgg 1387 (1702)
T KOG0915|consen 1385 SGG 1387 (1702)
T ss_pred CCC
Confidence 333
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.9e-14 Score=157.62 Aligned_cols=667 Identities=12% Similarity=0.108 Sum_probs=402.3
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC--hhhhhHHHHHH-HHHHhhchhccccCCCC----CCCc
Q 002596 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND--INHMEGAMDAL-SKICEDIPQVLDSDVPG----LAEC 176 (902)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~--~~~r~~al~~L-~~l~~~~~~~~~~~~~~----~~~~ 176 (902)
++++..|+.+-+-+..+ .+-|.+++.+.+.+.+++ -.+|.+|..-+ ..|.+.++..- .+| ..+.
T Consensus 15 d~d~~~R~~AE~~L~q~------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~---~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQL------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE---APGRPFGIPEE 85 (1010)
T ss_pred CCChHHHHHHHHHHHHh------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC---CCCCcCCCChH
Confidence 56689999876666554 344788888888887764 35666555444 66666655431 112 1112
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh---
Q 002596 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--- 253 (902)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--- 253 (902)
.-..+-..++..+-+...-+|..--.|++.++... +-...+.+++.+...+++++....-.++-++..++..+.
T Consensus 86 dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D---~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~ 162 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVPELIRVQLTACLNTIIKAD---YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK 162 (1010)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC---CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence 22334445666665556778888888888887653 223445556666677777776667778888888776543
Q ss_pred --------hhhhhhHHHHHHHHHhhhcCCCHH---HHHHHHHHHHHhhccCCchhhHHh-hhhhhHHHHHhhccCChhhh
Q 002596 254 --------SFLEPHLRNLFEYMLQVNKDTDDD---VALEACEFWHSYFEAQLPHENLKE-FLPRLVPVLLSNMIYADDDE 321 (902)
Q Consensus 254 --------~~~~~~l~~i~~~~~~~~~~~~~~---v~~~al~~l~~l~~~~~~~~~~~~-~l~~l~~~ll~~l~~~~~d~ 321 (902)
..+...++.+.+...+.+...+.+ +....+..+..++-+........+ .+..-+..++..+...-
T Consensus 163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv--- 239 (1010)
T KOG1991|consen 163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV--- 239 (1010)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC---
Confidence 123344555555555555555443 333445544444433211111111 11111222222221110
Q ss_pred hhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch---------------
Q 002596 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI--------------- 386 (902)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~--------------- 386 (902)
|.|. -..|+|+-...+.|...+.|...+.++.+.+|+..
T Consensus 240 ------P~E~--------------------l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~ 293 (1010)
T KOG1991|consen 240 ------PVEV--------------------LSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLK 293 (1010)
T ss_pred ------Chhc--------------------ccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 0000 00111211244567899999999999999887411
Q ss_pred --hhhhHHHHHHhhc---cCC-----------------------------------------------------------
Q 002596 387 --LPTLMPVIQAKLS---ASG----------------------------------------------------------- 402 (902)
Q Consensus 387 --~~~l~~~l~~~l~---~~~----------------------------------------------------------- 402 (902)
.+.++..+.+.+. .+.
T Consensus 294 n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E 373 (1010)
T KOG1991|consen 294 NFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE 373 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH
Confidence 1111111111110 000
Q ss_pred ---------CCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC--------CCChHHHHHHHHHHHhhHHHHh
Q 002596 403 ---------DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 403 ---------~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
++....+-||...+-.++..-+ +..++.+++++..-+. ..+++-+..|+.++|.+++.+.
T Consensus 374 YiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~---ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~ 450 (1010)
T KOG1991|consen 374 YIRKKFDIFEDGYSPDTAALDFLTTLVSKRG---KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILL 450 (1010)
T ss_pred HHHhcCchhcccCCCcHHHHHHHHHHHHhcc---hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHc
Confidence 0001223344444444443321 2334445555444333 2467888899999999998775
Q ss_pred hhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHh-ccchhhHHHHHHH
Q 002596 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDA 543 (902)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~p~l~~i~~~l~~~l~-~~~~~~~~~~~~a 543 (902)
+. .+.....-.-+++.++..++++....|.+||+.++.+++. .++ ...+.+++....+++. +.+.+++..+.-|
T Consensus 451 K~--s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalA 526 (1010)
T KOG1991|consen 451 KK--SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALA 526 (1010)
T ss_pred cC--CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHH
Confidence 42 0111222234667777888898899999999999999843 322 1245567777777777 5566777788888
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhh
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~ 623 (902)
+..++...... ++|+...+|.+++.+-... ++-+...+-.++..++..++++..||+..+.+.+...+....+. .
T Consensus 527 Lq~fI~~~~~~---~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~-~ 601 (1010)
T KOG1991|consen 527 LQSFISNQEQA---DEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT-S 601 (1010)
T ss_pred HHHHHhcchhh---hhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc-c
Confidence 99888765533 1455555555555443322 12222367778888999999999999999999887766554432 1
Q ss_pred cccccCCCCchhHH-HHHhhhHHHHHHHHhhhHHhhhcc-chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHh
Q 002596 624 DSVAAGAQYDKEFV-VCCLDLLSGLAEGLGSGIESLVAQ-SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR 701 (902)
Q Consensus 624 ~~~~~~~e~d~~~~-~~al~~l~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (902)
+++.++++ |+.+. .+.+.++++++.++...-.-+..- +.++|++...+++...++-+.++.++..+.- ....+.|-
T Consensus 602 ~~~~~~~d-dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~~~Isp~ 679 (1010)
T KOG1991|consen 602 EDEDESDD-DKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF-LSKEISPI 679 (1010)
T ss_pred CCCCccch-HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-hhcccCHH
Confidence 11122222 56553 467888888888876543222111 3577888888887777777777775554332 33568899
Q ss_pred HHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 002596 702 LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS---PIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (902)
Q Consensus 702 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~---~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (902)
+.++++.+.+.+.+. ..+.-....-++..++..++..+. .|...++.....++.+.. ....-++.++..+.-
T Consensus 680 mW~ll~li~e~~~~~----~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~-~~D~d~~~a~kLle~ 754 (1010)
T KOG1991|consen 680 MWGLLELILEVFQDD----GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSEN-GEDSDCESACKLLEV 754 (1010)
T ss_pred HHHHHHHHHHHHhhh----hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHH
Confidence 999999999999887 556667777888887776665442 355666666667776542 245566778999999
Q ss_pred HhhhcCCccCcChHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHHHcCchhhh
Q 002596 779 LAWVCPELVSPHMEHFMQPWCIALSM-IRDDTEKEDAFRGLCAMVKANPSGAL 830 (902)
Q Consensus 779 l~~~~~~~~~~~l~~~l~~~~~~l~~-~~d~~e~~~~~~~l~~li~~~p~~~~ 830 (902)
++..+.+.+.++++.++...++++.. .++.+-+..+++...+.+..||...+
T Consensus 755 iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL 807 (1010)
T KOG1991|consen 755 IILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTL 807 (1010)
T ss_pred HHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHH
Confidence 99998887778888888888888877 55566688888888888888997554
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=8e-16 Score=161.48 Aligned_cols=511 Identities=16% Similarity=0.168 Sum_probs=333.0
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhh
Q 002596 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (902)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l 181 (902)
.|+...+|.....+...+....+...-..+.|-..+.+++. +...|++....-+.+....... +.....+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~~~ 97 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPISI 97 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------CcchhHH
Confidence 46677888877766666655444444456777777777765 4566766666556655533221 1334667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHH
Q 002596 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (902)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~ 261 (902)
+..++..+..+++.+|.+...|+..+.......- ...+++.+.++++.+....|..+...+..+.....-.-... .
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~-~ 173 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE-F 173 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh-h
Confidence 8889999999999999999999998875432211 22335555566665666777777777776665443211110 1
Q ss_pred HHHHHHHhhhcCCCHHHHHH-HHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCC
Q 002596 262 NLFEYMLQVNKDTDDDVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (902)
Q Consensus 262 ~i~~~~~~~~~~~~~~v~~~-al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (902)
.++..+.....+.....+.+ +.-.....+.. ......||+..++|.++.+.....
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~--Lg~~~EPyiv~~lp~il~~~~d~~---------------------- 229 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGN--LGPPFEPYIVPILPSILTNFGDKI---------------------- 229 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHh--cCCCCCchHHhhHHHHHHHhhccc----------------------
Confidence 23333444444543333332 22222222222 345677888888888877665211
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 002596 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (902)
Q Consensus 341 p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (902)
-.+|.+|..+...+...++..-++.++|.+...+.+.. |+.+.+++..+|.++
T Consensus 230 ------------------------~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~k---WrtK~aslellg~m~ 282 (569)
T KOG1242|consen 230 ------------------------NKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAK---WRTKMASLELLGAMA 282 (569)
T ss_pred ------------------------hhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHh---hhhHHHHHHHHHHHH
Confidence 14899999999999999987666666666555555556 999999999999999
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002596 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (902)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~ 500 (902)
+..++.+.-.+++++|.+...+.|.+|.||.++..|+-+++..+. ..-+..++|.++.++.|++..+.+. .
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid--------N~dI~~~ip~Lld~l~dp~~~~~e~-~ 353 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID--------NPDIQKIIPTLLDALADPSCYTPEC-L 353 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhcCcccchHHH-H
Confidence 999999999999999999999999999999999999999998764 3347899999999999987566553 2
Q ss_pred HHHHHHHHH-h-cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc--cCCchhhhhhhhHHHHHHHhcCC
Q 002596 501 SAFATLEEE-A-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF--ELNQPVYLDILMPPLIAKWQQLP 576 (902)
Q Consensus 501 ~al~~l~~~-~-~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~--~~~~~~~~~~ll~~l~~~l~~~~ 576 (902)
..|+ .. . ...-.|-+.-+++.+.+.+........+.+...++.++.-+++ ... +|++.++|.+...+...
T Consensus 354 ~~L~---~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~Llp~lk~~~~d~- 427 (569)
T KOG1242|consen 354 DSLG---ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPSLLPGLKENLDDA- 427 (569)
T ss_pred Hhhc---ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHHHhhHHHHHhcCC-
Confidence 2222 11 1 1222467888889888999888777788888889999887743 333 78788887776665543
Q ss_pred CCCcch-hhHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhh
Q 002596 577 NSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (902)
Q Consensus 577 ~~~~~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~ 654 (902)
.+++ .-+...++.+.+..|. .| +.+.|.+...+..... +. -+.++.+.++.+..++|..
T Consensus 428 --~PEvR~vaarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~k~------------~~-~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 428 --VPEVRAVAARALGALLERLGEVSF----DDLIPELSETLTSEKS------------LV-DRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred --ChhHHHHHHHHHHHHHHHHHhhcc----cccccHHHHhhccchh------------hh-hhHHHhhhHHHHHhcccch
Confidence 3554 3456677788888876 33 5555555444432210 11 1223444455555555432
Q ss_pred HHhhhccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCC
Q 002596 655 IESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTP 716 (902)
Q Consensus 655 ~~~~~~~~~l~~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 716 (902)
++. .+++-+..... ..++.++..-..++.-+-...+..+.+|+.++++.+.+.+.+.
T Consensus 489 ---~~~--~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~ 547 (569)
T KOG1242|consen 489 ---KVE--DILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADN 547 (569)
T ss_pred ---HHH--HHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhc
Confidence 111 13333332222 2334466655555555555556788999999999999998765
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=1.3e-14 Score=164.69 Aligned_cols=631 Identities=14% Similarity=0.135 Sum_probs=415.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHh--HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHH
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC 139 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~--~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~ 139 (902)
+.+++.|+++.+.|--.+++-- +.++- ....|..+....|.|.+..+...++.-++.+......+.=.+++..|...
T Consensus 829 s~nph~R~A~~VWLLs~vq~l~-~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~t 907 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYLG-QQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNT 907 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc-cCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHH
Confidence 7899999999999977665532 22222 23456677778899999999999888888766554344445666666665
Q ss_pred hccCCh---------hh-h---------hHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHH
Q 002596 140 LDSNDI---------NH-M---------EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKL 199 (902)
Q Consensus 140 l~~~~~---------~~-r---------~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~ 199 (902)
+..+.- .+ . -+.+.+...+|.-. ++..+ ++++=+++++.+|. .+.-|..
T Consensus 908 l~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LA-----Sdl~q------PdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 908 LTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLA-----SDLGQ------PDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHH-----hhcCC------hHHHHHHHHHhhhhchhhcccc
Confidence 543210 00 0 01233333333321 12111 67788888888875 6778888
Q ss_pred HHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHH
Q 002596 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (902)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~ 279 (902)
|..-|+.+...-.+.+.+++..++|.|+..--||+..|+......+..++.........|+..|++-++..+.+..-.+|
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 98889998877778889999999999999888999999999999999999877778888999999999988888888999
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 002596 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (902)
Q Consensus 280 ~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~ 359 (902)
..+|-.+..+.+.+ ....+...++++...+++.|- |+.
T Consensus 1057 easclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmD----DIK------------------------------------- 1094 (1702)
T KOG0915|consen 1057 EASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMD----DIK------------------------------------- 1094 (1702)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHH----HHH-------------------------------------
Confidence 99999999998873 344556667776666655442 221
Q ss_pred cccccccHHHHHHHHHHHHHhhc-----------CcchhhhhHHHHHH-hhccCCCCchHHHHHHHHHHHHHHhcchhhh
Q 002596 360 DIVNVWNLRKCSAAALDVLSNVF-----------GDEILPTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (902)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~-----------~~~~~~~l~~~l~~-~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 427 (902)
-++|.+|-.+.+.+++.. |.+++..++|++.. .+-+.- ..+|..++..+..++...+..+
T Consensus 1095 -----EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v---~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1095 -----ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKV---NEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccch---HHHHHHHHHHHHHHHHhchhhh
Confidence 047888877777766654 23567788887753 333555 7899999999999999999999
Q ss_pred hhhHHHHHHHHhhccCCCChHH-HHHHHHHHHhhHHHHhhhh----------------cCCcchhhHHHHHHHHHHHhcC
Q 002596 428 YPHLSEIVAFLIPLLDDKFPLI-RSISCWTLSRFSKFIVQDI----------------GHQNGREQFEKVLMGLLKRILD 490 (902)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~v-r~~a~~~l~~~~~~~~~~~----------------~~~~~~~~~~~il~~l~~~l~d 490 (902)
.||+++++|.++.....-.|.| -+.++.+.++=.+.+...- -+......+++++|.+.+.++.
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999887655543 3445554333222211100 0012345577888888888875
Q ss_pred C-CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc-cCCchhhhhhhhHHH
Q 002596 491 T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF-ELNQPVYLDILMPPL 568 (902)
Q Consensus 491 ~-~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~-~~~~~~~~~~ll~~l 568 (902)
. .-..|..|+..+..+...++..+.||.+.++..++..+.+..+.+++....|+|.+++...+ .+. .++..++..+
T Consensus 1247 sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~q--KLie~~l~~~ 1324 (1702)
T KOG0915|consen 1247 SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQ--KLIETLLADL 1324 (1702)
T ss_pred cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHH
Confidence 3 34567788888899999999999999999999999999988778888888999999987654 322 4444444333
Q ss_pred HHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHH
Q 002596 569 IAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (902)
Q Consensus 569 ~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~ 648 (902)
+. . .+......+.+++.|+......+..|...++|.+.-..+.. +++...-.-+++..+.
T Consensus 1325 l~---k---~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee--------------~Ka~q~Lw~dvW~e~v 1384 (1702)
T KOG0915|consen 1325 LG---K---DESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE--------------EKANQELWNDVWAELV 1384 (1702)
T ss_pred hc---c---CCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHhC
Confidence 22 1 11111344455555777667778889999999874222211 1222111223344443
Q ss_pred HHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhH-HhHHHHHHHHHHhcCCCCCccchhHhhh
Q 002596 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANN 727 (902)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~v~~~ 727 (902)
.+-.+...-|..+ .+.+++....++..+.+|..+...+--++........ |++-.+.+.+...+... -.+-++.
T Consensus 1385 sggagtvrl~~~e-iLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR----iwdGKe~ 1459 (1702)
T KOG0915|consen 1385 SGGAGTVRLYLLE-ILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR----IWDGKEE 1459 (1702)
T ss_pred CCCcchhhhhHHH-HHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc----ccccHHH
Confidence 3322222223332 3444555556666688888777777777766554433 77778888888777765 3455666
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcC
Q 002596 728 ACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (902)
Q Consensus 728 a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (902)
...++......+...+....+.+..+..+...... ...+..+....|......+
T Consensus 1460 iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~---~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1460 ILKALASAFEAGLADVKRNMSSIEHAVMEEVSRRE---AKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHH---hHHHHHHHhhhHHHHhhhh
Confidence 66667666666655554445555555544443222 2233333444455554443
No 29
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.4e-14 Score=145.01 Aligned_cols=461 Identities=16% Similarity=0.240 Sum_probs=296.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhh---cCChHHH
Q 002596 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (902)
Q Consensus 34 ~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~---~~~~~vr 110 (902)
.+|..+|.+|++.++.|...-+|+.. ..+.+...+|+..+|+++...+..+++......|+.++..++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 46889999999999999988888865 478899999999999999999999999988999998887664 4444999
Q ss_pred HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccC----CCCC---CCcchhhhHH
Q 002596 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD----VPGL---AECPINIFLP 183 (902)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~----~~~~---~~~~~~~l~~ 183 (902)
.+++-+++.++-..+ .|.+-++.+...+++..+. .-.-+..|..+-++..+.-... ...+ +......++.
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 999999999987753 7877666666666666554 3344555544444433211000 0000 0112234444
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHhc--ccch-hhHHhHHHHHHHHHHhhC--------------------------
Q 002596 184 RLLQFFQSP---HTSLRKLSLGSVNQFIM--LMPS-ALFVSMDQYLQGLFLLSN-------------------------- 231 (902)
Q Consensus 184 ~l~~~l~~~---~~~vr~~al~~l~~~~~--~~~~-~~~~~~~~~l~~l~~~~~-------------------------- 231 (902)
.+..+++.. +..+...+++|++++.. ..+. .+.... .++..+|..++
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~-pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~ 235 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASF-PLITLAFRSLSDDELHEEATECICALLYCSLDRSEGL 235 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhh-HHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccC
Confidence 455555543 46788888999988875 3332 221111 11122222111
Q ss_pred ----------------------CCCHHHHHHHHHHHHHHHhhChhhhh---hhHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 002596 232 ----------------------DPSAEVRKLVCAAFNLLIEVRPSFLE---PHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (902)
Q Consensus 232 ----------------------~~~~~vr~~~~~~l~~l~~~~~~~~~---~~l~~i~~~~~~~~~~~~~~v~~~al~~l 286 (902)
..+.+-+...+..|+.+.+.+...+. ...-.+++.++-.....+.++....+.||
T Consensus 236 ~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW 315 (559)
T KOG2081|consen 236 PLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFW 315 (559)
T ss_pred chhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhh
Confidence 12333444445555554443322111 12223444455555666778888999999
Q ss_pred HHhhcc------CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 002596 287 HSYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (902)
Q Consensus 287 ~~l~~~------~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d 360 (902)
..+.+. ......++||..+++..+...+.+.. |.+.. . |+++
T Consensus 316 ~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~-~~~~l-----------------------------~--Ee~~ 363 (559)
T KOG2081|consen 316 YSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP-DQFDL-----------------------------P--EEES 363 (559)
T ss_pred hhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC-ccccC-----------------------------c--cchh
Confidence 998775 22346778999999999998888765 21110 0 1111
Q ss_pred ccccccHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHh
Q 002596 361 IVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (902)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (902)
+....|....+.+..++..+|+ +.+..+...+.+ +++. |..-+|++..+..++......-.+.+|+++..+.
T Consensus 364 --~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~ 436 (559)
T KOG2081|consen 364 --EFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVLKLIC 436 (559)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHHHHHh
Confidence 1235788999999999999986 555444444433 3445 9999999999999998776544556666666555
Q ss_pred hccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHH
Q 002596 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE 519 (902)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~ 519 (902)
+.= ....+|++++..+|.+++|+.. .+..++.++..+...+.+.. ....+..++..++..|...+.+.++
T Consensus 437 nlp--~Q~~~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~ 506 (559)
T KOG2081|consen 437 NLP--EQAPLRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIP 506 (559)
T ss_pred CCc--cchhHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 532 2233999999999999999974 57788889999998888754 7778888888888888665554444
Q ss_pred H---HHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Q 002596 520 I---ILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 520 ~---i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (902)
. ++..+.....+ ..... .+..++.++...+
T Consensus 507 ~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 507 SLLELIRSLDSTQIN--EEAAC-LLQGISLIISNLP 539 (559)
T ss_pred HHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCC
Confidence 4 44443333332 12222 4566665555443
No 30
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.73 E-value=9.8e-14 Score=143.18 Aligned_cols=648 Identities=14% Similarity=0.130 Sum_probs=382.7
Q ss_pred CChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002596 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (902)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (902)
++...|..--.++.+++...+.+ ..+..+..-+.+.++-+|...-.+.+.++..++ .++++|.
T Consensus 258 ed~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg--------------v~~llpf 320 (975)
T COG5181 258 EDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGVVADALG--------------VEELLPF 320 (975)
T ss_pred ccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHHHHHhhC--------------cHHHHHH
Confidence 44555555555666665543221 112222223456678899888888888777543 2778898
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHH
Q 002596 185 LLQFFQSP-HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (902)
Q Consensus 185 l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i 263 (902)
+-..+.+. +++-|+.++++...+.....-...+++..++..+-.++.|.+..+|..+..++..+++....+=...++.+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 88888875 89999999999999998888888889988899998999898888999999999999998777666677777
Q ss_pred HHHHHhhhcCC-CHHH--HHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCC
Q 002596 264 FEYMLQVNKDT-DDDV--ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (902)
Q Consensus 264 ~~~~~~~~~~~-~~~v--~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (902)
+..+++..+.. ..+. -..|..|+.-+.+ ++....+.......++..+...++
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~----peYa~h~tre~m~iv~ref~spde--------------------- 455 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMS----PEYACHDTREHMEIVFREFKSPDE--------------------- 455 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCC----hHhhhhhHHHHHHHHHHHhCCchh---------------------
Confidence 77777654432 2211 1222333322222 111112222223333222221111
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc----hhhhhHHHHHHhhccCCCCchHHHHHHH---
Q 002596 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAV--- 413 (902)
Q Consensus 341 p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~r~~a~--- 413 (902)
+. +.-...+.+.+...|.. ....+.|. +-+.- |..|-|+=
T Consensus 456 -------------------em-------kk~~l~v~~~C~~v~~~tp~~lr~~v~pe----fF~~f---w~rr~A~dr~~ 502 (975)
T COG5181 456 -------------------EM-------KKDLLVVERICDKVGTDTPWKLRDQVSPE----FFSPF---WRRRSAGDRRS 502 (975)
T ss_pred -------------------hc-------chhHHHHHHHHhccCCCCHHHHHHhhcHH----hhchH---HHhhhcccccc
Confidence 00 11222333333344321 12222222 22333 66555441
Q ss_pred -----HHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHh
Q 002596 414 -----LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (902)
Q Consensus 414 -----~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 488 (902)
.+-..++... --+.++..++..++|+...-|..+..+.+++...++.. ......-+.++..++..+
T Consensus 503 ~k~v~~ttvilAk~~------g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~---~~dErleerl~d~il~Af 573 (975)
T COG5181 503 YKQVVLTTVILAKMG------GDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL---GFDERLEERLYDSILNAF 573 (975)
T ss_pred cceeehhHHHHHHHc------CChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc---cccHHHHHHHHHHHHHHH
Confidence 1111122111 11346778888899998888988888888877766532 123334455666666666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHH
Q 002596 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (902)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l 568 (902)
+..+..+.. ...+++......+-...||++.|+..+++.|++....++..+.+.+++++......-. .+.+..+-..|
T Consensus 574 qeq~~t~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~iL 651 (975)
T COG5181 574 QEQDTTVGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNIL 651 (975)
T ss_pred HhccccccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHHH
Confidence 643322211 1222333333445566899999999999999998888888888888877765432111 02333333333
Q ss_pred HHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHH
Q 002596 569 IAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSG 646 (902)
Q Consensus 569 ~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~ 646 (902)
.+ +.+.+.+++ ..++.++-.|....+- .+.|-+..++|.+..+|.+..+ .+....+++++.
T Consensus 652 yE---~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~--------------Kv~~nti~lvg~ 714 (975)
T COG5181 652 YE---NLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQ--------------KVVANTIALVGT 714 (975)
T ss_pred HH---hcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhH--------------HHhhhHHHHHHH
Confidence 33 344455665 5677777777777765 6778889999999888887542 233344555555
Q ss_pred HHHHHhhhHHhhhccchHHHHH---HHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchh
Q 002596 647 LAEGLGSGIESLVAQSNLRDML---LQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVS 723 (902)
Q Consensus 647 l~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 723 (902)
++....+ |++....+.+. ...+.+.+-++|.+|...+|.+++..|. .+++..++.+|+.. .-.
T Consensus 715 I~~~~pe----yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvq----eRq 780 (975)
T COG5181 715 ICMNSPE----YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQ----ERQ 780 (975)
T ss_pred HHhcCcc----cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHH----HHH
Confidence 5543222 33322233332 3345566789999999999999998774 35777788887765 224
Q ss_pred HhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhcc
Q 002596 724 VANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALS 803 (902)
Q Consensus 724 v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~ 803 (902)
.|-....|++..+..++ || .+++.|..=...|+ ..+......+++.+-.+-.+.-..|+-.+.|.+-.+|.
T Consensus 781 ~RvctsvaI~iVae~cg----pf--sVlP~lm~dY~TPe---~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 781 QRVCTSVAISIVAEYCG----PF--SVLPTLMSDYETPE---ANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred hhhhhhhhhhhhHhhcC----ch--hhHHHHHhcccCch---hHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 45555567777777766 33 23555656566664 45556666666666665555455677778888888887
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCchhh--hhhHHHHhhHhh-cccccCcHHHHHHHHHHHHHHHhhcChhhHHHHHhc--C
Q 002596 804 MIRDDTEKEDAFRGLCAMVKANPSGA--LSSLVFMCRAIA-SWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSA--L 878 (902)
Q Consensus 804 ~~~d~~e~~~~~~~l~~li~~~p~~~--~~~l~~i~~~i~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l 878 (902)
+ +|..-|..+.+.+..++.+ +++. ......+++.+- .--+ +.+-..+.+..=+.++++++|.+.+-.+..| |
T Consensus 852 D-rD~vhRqta~nvI~Hl~Ln-c~gtg~eda~IHLlNllwpNIle-~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLF 928 (975)
T COG5181 852 D-RDPVHRQTAMNVIRHLVLN-CPGTGDEDAAIHLLNLLWPNILE-PSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLF 928 (975)
T ss_pred c-cchHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHhhhhccC-CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 6 5555566776665555544 4432 233333344331 1111 2223556666777788888876454444432 4
Q ss_pred CHH
Q 002596 879 EPP 881 (902)
Q Consensus 879 ~~~ 881 (902)
.|.
T Consensus 929 HPs 931 (975)
T COG5181 929 HPS 931 (975)
T ss_pred Cch
Confidence 454
No 31
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.5e-14 Score=149.33 Aligned_cols=514 Identities=14% Similarity=0.122 Sum_probs=338.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 002596 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (902)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~ 268 (902)
.|+.+.+|..-+++....+...+.. ....+++..-+.++. .+..+|....-....+.... ....+....++..++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~---~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~-~~~d~~~~~~~~~~~ 102 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQ---NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHL-QIVDPRPISIIEILL 102 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHH---HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhc-cccCcchhHHHHHHH
Confidence 5667788888877777666443322 223334444444432 24456666555555544332 222345556777777
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccC
Q 002596 269 QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (902)
Q Consensus 269 ~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 348 (902)
+....+.+.++.....++..+.-.. ...-..+ ..+.+.+.+..+
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~--~~~~~~~---~l~~l~~ll~~~------------------------------- 146 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLS--KGLSGEY---VLELLLELLTST------------------------------- 146 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHh--hccCHHH---HHHHHHHHhccc-------------------------------
Confidence 7777788888777666665543321 0011111 112222222211
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchh--hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhh
Q 002596 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG 426 (902)
Q Consensus 349 ~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 426 (902)
...-|+.+...+..+....+-..+ ..++..+...+.+..+ ...|+++..++.......+..
T Consensus 147 ---------------~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~--~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 147 ---------------KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS--ALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred ---------------cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch--hhcHHHHHHHHHHHHHhcCCC
Confidence 012245566666555555543111 2344555566665443 777888888888888888878
Q ss_pred hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002596 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (902)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l 506 (902)
..|++..++|.++....|..+.||.+|..+...+...+. ..-...+++.++..+.+..++-+.++...++.+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~--------~~aVK~llpsll~~l~~~kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS--------AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC--------cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 889999999999999999999999999999887777653 223456777777777776889999999999999
Q ss_pred HHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHH
Q 002596 507 EEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLL 586 (902)
Q Consensus 507 ~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l 586 (902)
.+..+..+.-+++.++|.+...+.+.+.+++..+.+++..+.....+ +-+..++|.+++.+..... ...
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-----~dI~~~ip~Lld~l~dp~~------~~~ 350 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-----PDIQKIIPTLLDALADPSC------YTP 350 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHhcCccc------chH
Confidence 98889999999999999999999999999999999999888877654 4577788888887765431 222
Q ss_pred HHHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHH--hhhHHhhhccch
Q 002596 587 ECFTSIAQALGAGFTQFAQ-PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL--GSGIESLVAQSN 663 (902)
Q Consensus 587 ~~l~~i~~~~g~~f~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~--~~~~~~~~~~~~ 663 (902)
+|+..+.. ..|..|.. +-+..++.++..... +-+.+....+...++.++.-. ...+.+|++.
T Consensus 351 e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~----------eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-- 415 (569)
T KOG1242|consen 351 ECLDSLGA---TTFVAEVDAPSLALMVPILKRGLA----------ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-- 415 (569)
T ss_pred HHHHhhcc---eeeeeeecchhHHHHHHHHHHHHh----------hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH--
Confidence 33333221 24444432 122223333343221 113334455666677777776 5678888886
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhh
Q 002596 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (902)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~ 743 (902)
++|-+...+.+..|++|..+...+|.+.+..+..-. +...|.+...+.+.. ...-|..++..+++.....+.
T Consensus 416 Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k---~~~~~~g~aq~l~evl~~~~v-- 487 (569)
T KOG1242|consen 416 LLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEK---SLVDRSGAAQDLSEVLAGLGV-- 487 (569)
T ss_pred HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccch---hhhhhHHHhhhHHHHHhcccc--
Confidence 999999888888999999999999999998875432 677777777776653 223456777788877665553
Q ss_pred hhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccC
Q 002596 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSM 804 (902)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~ 804 (902)
.++..++..++.-...... .+.+++.....+.-+-...+....+|+..+++.+++.+..
T Consensus 488 -~~~~~~~~~~~a~~~~~~~-~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 488 -EKVEDILPEILANASSVLI-DERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred -hHHHHHHHHHHHHHhhccc-hhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 4455555555555444432 4567887777777777777777888999999999998874
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.7e-13 Score=139.14 Aligned_cols=412 Identities=15% Similarity=0.130 Sum_probs=292.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccc-chhhHHhHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHH
Q 002596 185 LLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (902)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 262 (902)
+...++|...+-|++|.--+-.++... ...-...++.++..+.. .+..++..-|++.+-++...+-.....-.+|+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 455677777777888876666655421 22233455666665544 4455666667777777766544444444459999
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcc
Q 002596 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (902)
Q Consensus 263 i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~ 342 (902)
+++-++.+..|.|..+|..||+.+..+++. .+..+.+|++.++..+......++.
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv--~k~~v~~~Fn~iFdvL~klsaDsd~----------------------- 139 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKV--AKGEVLVYFNEIFDVLCKLSADSDQ----------------------- 139 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHH--hccCcccchHHHHHHHHHHhcCCcc-----------------------
Confidence 999999999999999999999999999887 6666778888888777554442211
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC--c---chhhhhHHHHHHhhccCCCCchHHHHHHHHHHH
Q 002596 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (902)
Q Consensus 343 ~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~ 417 (902)
++ +.+++.++++.+-.. . --++.++|.+.+.+...+ +..|..-+..+.
T Consensus 140 -----------------------~V-~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n---~~tR~flv~Wl~ 192 (675)
T KOG0212|consen 140 -----------------------NV-RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVIN---PMTRQFLVSWLY 192 (675)
T ss_pred -----------------------cc-ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCC---chHHHHHHHHHH
Confidence 12 236677777776652 1 237889999999998887 899999888888
Q ss_pred HHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHH
Q 002596 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (902)
Q Consensus 418 ~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~ 497 (902)
.+-....-.+-.|++.+++.+++.|.|+++.||..+-.+++.|-..+... | ..-....+++.++..+..+++.+|.
T Consensus 193 ~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~--P--~s~d~~~~i~vlv~~l~ss~~~iq~ 268 (675)
T KOG0212|consen 193 VLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS--P--SSMDYDDMINVLVPHLQSSEPEIQL 268 (675)
T ss_pred HHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC--c--cccCcccchhhccccccCCcHHHHH
Confidence 88776666788999999999999999999999999999999998877632 1 1114578889999999999999999
Q ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHH-HHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCC
Q 002596 498 AACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLP 576 (902)
Q Consensus 498 ~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~-~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 576 (902)
.|...+..|+.-.+..+.+|+..|+..++.++.+....... .+...-+ .++.......
T Consensus 269 ~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~---------------------~l~~l~s~~~ 327 (675)
T KOG0212|consen 269 KALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG---------------------LLLKLVSSER 327 (675)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH---------------------HHHHHHhhhh
Confidence 99999999999889999999999999999998876543211 1111100 1111111100
Q ss_pred CCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHH
Q 002596 577 NSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIE 656 (902)
Q Consensus 577 ~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~ 656 (902)
.|+++ -...++..+.+.+... ..+.+.++++-+..+....+..+.
T Consensus 328 -------------------~~~~i--d~~~ii~vl~~~l~~~--------------~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 328 -------------------LKEEI--DYGSIIEVLTKYLSDD--------------REETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred -------------------hcccc--chHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHHHhhCcchhh
Confidence 00010 0122333333333321 335678889999999999998888
Q ss_pred hhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchH-hhHHhHHHHHHHHH
Q 002596 657 SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAA 710 (902)
Q Consensus 657 ~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~ 710 (902)
.+.++ +++.++..++|++.+|..-++.++..+|..-.. ...+|+..++..+.
T Consensus 373 ~h~~~--if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 373 VHNDS--IFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred hhccH--HHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHh
Confidence 88876 999999999999999999999999999987553 44555555554443
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.66 E-value=3.6e-12 Score=145.87 Aligned_cols=507 Identities=17% Similarity=0.164 Sum_probs=313.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-cCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHH
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~ 93 (902)
+++.++++... .+.. .|+.+-+.|-.+. ...+.-....+++..-.+.+...|.++.+.+..... -+++..-.
T Consensus 7 ~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-----~~~~~~~l 79 (526)
T PF01602_consen 7 QELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLH-----EDPELLIL 79 (526)
T ss_dssp HHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT-----TSHHHHHH
T ss_pred HHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-----cchhHHHH
Confidence 45666666554 3555 7777777775543 222222223344332236789999999988864433 34555566
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCC
Q 002596 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (902)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (902)
+.+.+.+-|.++++.+|..+-.+++.+. .++..+.+++.+.+++.++++.+|..|+.++..+.+..++..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~------- 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV------- 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH-------
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH-------
Confidence 7788888889999999998888888776 355778999999999999999999999999999999766532
Q ss_pred CCcchhh-hHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 002596 174 AECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (902)
Q Consensus 174 ~~~~~~~-l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 252 (902)
+. +++.+.+.+.++++.|+.+|+.++..+ ...++.....++.+.+.+.+.+.++++..+..+++.+..+....
T Consensus 150 -----~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 150 -----EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp -----HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred -----HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 33 799999999999999999999999998 43333323445566677777667788888888888877666544
Q ss_pred hhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCC
Q 002596 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (902)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~ 332 (902)
+..-.. ..+++.+...+.+.++.+..+++.++..+...
T Consensus 224 ~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---------------------------------------- 261 (526)
T PF01602_consen 224 PEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---------------------------------------- 261 (526)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----------------------------------------
T ss_pred hhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc----------------------------------------
Confidence 443211 23333333333333444444444443322111
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHH
Q 002596 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAA 412 (902)
Q Consensus 333 ~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a 412 (902)
...+..+++.+..++.+++ +..|..+
T Consensus 262 ---------------------------------------------------~~~~~~~~~~L~~lL~s~~---~nvr~~~ 287 (526)
T PF01602_consen 262 ---------------------------------------------------PELLQKAINPLIKLLSSSD---PNVRYIA 287 (526)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHTSSS---HHHHHHH
T ss_pred ---------------------------------------------------hHHHHhhHHHHHHHhhccc---chhehhH
Confidence 0123445566667777777 8899999
Q ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC-
Q 002596 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT- 491 (902)
Q Consensus 413 ~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~- 491 (902)
+.++..++......+. +.... +.....++++.+|..++..+..++. ......+++.+.+.+.+.
T Consensus 288 L~~L~~l~~~~~~~v~-~~~~~---~~~l~~~~d~~Ir~~~l~lL~~l~~-----------~~n~~~Il~eL~~~l~~~~ 352 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVF-NQSLI---LFFLLYDDDPSIRKKALDLLYKLAN-----------ESNVKEILDELLKYLSELS 352 (526)
T ss_dssp HHHHHHHCCHCHHHHG-THHHH---HHHHHCSSSHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccchhhh-hhhhh---hheecCCCChhHHHHHHHHHhhccc-----------ccchhhHHHHHHHHHHhcc
Confidence 9988888876533333 11111 2223347889999999999888875 345667888888888544
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002596 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (902)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~ 571 (902)
+..++..++.+++.+++........| ++.+++.+..........+...+..+....+ ..-..++..+...
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~----v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~------~~~~~~l~~L~~~ 422 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWY----VDTLLKLLEISGDYVSNEIINVIRDLLSNNP------ELREKILKKLIEL 422 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHH----HHHHHHHHHCTGGGCHCHHHHHHHHHHHHST------TTHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHH----HHHHHHhhhhccccccchHHHHHHHHhhcCh------hhhHHHHHHHHHH
Confidence 67899999999999998875554444 4455566665544555555555555554432 2223456666666
Q ss_pred HhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHH
Q 002596 572 WQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (902)
Q Consensus 572 l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~ 650 (902)
+... .++.. ..++-++|..+..... ....+.++..+.+.+. .+ +...+..++.++..+...
T Consensus 423 l~~~--~~~~~~~~~~wilGEy~~~~~~--~~~~~~~~~~l~~~~~-------------~~-~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 423 LEDI--SSPEALAAAIWILGEYGELIEN--TESAPDILRSLIENFI-------------EE-SPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HTSS--SSHHHHHHHHHHHHHHCHHHTT--TTHHHHHHHHHHHHHT-------------TS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHh--hHHHHHHHHHhhhcccCCcccc--cccHHHHHHHHHHhhc-------------cc-cHHHHHHHHHHHHHHHhh
Confidence 6653 22222 3344444444333332 0033344444332221 11 334554455555444443
Q ss_pred Hhh-hHHhhhccchHHHHHHHHhc--CCChHHHHHHHHHHH
Q 002596 651 LGS-GIESLVAQSNLRDMLLQCCM--DDASDVRQSAFALLG 688 (902)
Q Consensus 651 ~~~-~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~a~~~l~ 688 (902)
.+. +.. +.+.+.+..... +.+++||+-|...+.
T Consensus 485 ~~~~~~~-----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 485 NPENEVQ-----NEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp SCSTTHH-----HHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred CCchhhH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 331 111 136667776666 789999999887544
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.3e-12 Score=134.30 Aligned_cols=411 Identities=13% Similarity=0.122 Sum_probs=305.9
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhc-CcCc---hHHHHHHHH-HHhccCChhhhhHHHHHHHHHHhhchhccccCCC
Q 002596 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAG---WLELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (902)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~-~~~~---w~~ll~~L~-~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (902)
.+.++|+|.-..=|+.+|.-+-.+.+.. ..+. ...++..+. ....+++...|.|++..+....-..+..-
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~----- 78 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD----- 78 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc-----
Confidence 4566788888888999999999988864 2222 244555333 44556777788899999977766555421
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002596 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 251 (902)
..++..++|.++.++.+++..+|..|+..+.++......++..+++.+...+..+..|++..||.. .+.+..+...
T Consensus 79 ---~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikd 154 (675)
T KOG0212|consen 79 ---AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKD 154 (675)
T ss_pred ---HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHH
Confidence 135688999999999999999999999999999988878888899999999999888887777654 3444444332
Q ss_pred Ch-hhh-hhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhcc
Q 002596 252 RP-SFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (902)
Q Consensus 252 ~~-~~~-~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (902)
-. +.- .=+++.+++.+-.-+...++..|...++.+..+-.. ..-.+-.|++.+++.++.++....+
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~---------- 222 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSD---------- 222 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcH----------
Confidence 11 110 235788888888777777888888877776666554 2334567999999999888873322
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC---cc-hhhhhHHHHHHhhccCCCCc
Q 002596 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG---DE-ILPTLMPVIQAKLSASGDEA 405 (902)
Q Consensus 330 ~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~---~~-~~~~l~~~l~~~l~~~~~~~ 405 (902)
.+|..+..+++.+-.... .. -.+..++.+...+.+++
T Consensus 223 ------------------------------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~--- 263 (675)
T KOG0212|consen 223 ------------------------------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE--- 263 (675)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---
Confidence 267777777766665552 22 24567777778888888
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCCh-HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 484 (902)
...+..|+..+..+..-.+..+-++++.++..+++++.|..+ .++..+...-+.+...+...... ..--+..++..+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--cccchHHHHHHH
Confidence 888988999999999888888889999999999999998877 47777776666665554322110 112355899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 002596 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (902)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l 564 (902)
.+.+.+.....|.+|...+..+....+..+.-+.++|++.+++.+.+....+...++..++.++.+... +.+..+
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-----~~~~~f 416 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-----PNLRKF 416 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-----ccHHHH
Confidence 999999999999999999999999999999999999999999999999888888888888888765432 234555
Q ss_pred hHHHHHHHhc
Q 002596 565 MPPLIAKWQQ 574 (902)
Q Consensus 565 l~~l~~~l~~ 574 (902)
+..+++.+..
T Consensus 417 l~sLL~~f~e 426 (675)
T KOG0212|consen 417 LLSLLEMFKE 426 (675)
T ss_pred HHHHHHHHhh
Confidence 5666666664
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=1.2e-11 Score=140.00 Aligned_cols=411 Identities=15% Similarity=0.138 Sum_probs=270.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHH-HhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHH
Q 002596 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAF-ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (902)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~~~l~~-il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i 94 (902)
+..++..+.++|-+ .||-+.-++.++.+ +|+.....+. +..+..+.++.+|-+|.-.|-+ -..++..+.+
T Consensus 70 F~dVvk~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~-------Ir~~~i~e~l 141 (746)
T PTZ00429 70 FVDVVKLAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC-------IRVSSVLEYT 141 (746)
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc-------CCcHHHHHHH
Confidence 44555566677777 88888888888765 7774333333 3333356788888887755521 1235566777
Q ss_pred HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCc-hHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhcc-------
Q 002596 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG-WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL------- 166 (902)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~-w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~------- 166 (902)
...+.+++.|+++.||++++.++..+.+..+.-. -.++++.|.+++.+.++.+..+|+.+|..+.+..+..+
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~ 221 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWV 221 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 7788889999999999999999999988764211 12456677778899999999999999988876532100
Q ss_pred -------c--cCCCCC-----C-------CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhH-HhHHHHHH
Q 002596 167 -------D--SDVPGL-----A-------ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQ 224 (902)
Q Consensus 167 -------~--~~~~~~-----~-------~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~l~ 224 (902)
. ++|... + ......++..+...+++.++.|...|++++..+....+.... ..+..+-.
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~ 301 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNT 301 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 0 011000 0 112345777788888889999999999999888765433222 22223334
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhh
Q 002596 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (902)
Q Consensus 225 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~ 304 (902)
.+..+. +.+++++-.++..+..++...|..+.++++.++. ...|+. .++...++.+..++.... +.
T Consensus 302 pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~----~~~Dp~-yIK~~KLeIL~~Lane~N--------v~ 367 (746)
T PTZ00429 302 ALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYV----RYSDPP-FVKLEKLRLLLKLVTPSV--------AP 367 (746)
T ss_pred HHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhc----ccCCcH-HHHHHHHHHHHHHcCccc--------HH
Confidence 444443 4567899999999999999999888776544322 233433 489999999999987522 23
Q ss_pred hhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc
Q 002596 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD 384 (902)
Q Consensus 305 ~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~ 384 (902)
.++..|..+.... | -.+++.+..+++.++..++.
T Consensus 368 ~IL~EL~eYa~d~---------------------------------------D-------~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 368 EILKELAEYASGV---------------------------------------D-------MVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred HHHHHHHHHhhcC---------------------------------------C-------HHHHHHHHHHHHHHHHhChH
Confidence 3333333333210 0 13788899999999988754
Q ss_pred chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc---CCCChHHHHHHHHHHHhhH
Q 002596 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~~~ 461 (902)
....++..+.+++.+.. .... .++.++..+....++.. +++.+...+ .=.++..|.+.+|.+|+|+
T Consensus 402 -~a~~cV~~Ll~ll~~~~---~~v~-e~i~vik~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~ 470 (746)
T PTZ00429 402 -VAPDCANLLLQIVDRRP---ELLP-QVVTAAKDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYC 470 (746)
T ss_pred -HHHHHHHHHHHHhcCCc---hhHH-HHHHHHHHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence 45567777777776543 2222 45677777766554321 344444322 1256889999999999999
Q ss_pred HHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchH
Q 002596 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (902)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p 516 (902)
+.+.. ...++..++..+.+.++.||.....+...+.-..++...+
T Consensus 471 ~~I~~----------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~ 515 (746)
T PTZ00429 471 DFIEN----------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP 515 (746)
T ss_pred hhHhh----------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 86642 2356666667777788999999888888777655444333
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.1e-14 Score=152.35 Aligned_cols=362 Identities=16% Similarity=0.172 Sum_probs=244.3
Q ss_pred hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhh
Q 002596 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (902)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 466 (902)
..++|.+.+.+...++ ...+..|.++|..|+.|..+...-.++ ..+|.++.++.+++..||..|.|+||.++..-+.
T Consensus 108 ~G~v~~lV~~l~~~~~--~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDN--PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCC--hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 3567777777764332 889999999999999988766544433 3788899999999999999999999999886543
Q ss_pred hhcCCcchhh--HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhccchhhHHHHHH
Q 002596 467 DIGHQNGREQ--FEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYD 542 (902)
Q Consensus 467 ~~~~~~~~~~--~~~il~~l~~~l~d~~~-~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~ 542 (902)
. ..+ -..+++.|+..+..+.+ .....+.|+|.+||... +..-...+..+++.|..++...+..++..++.
T Consensus 186 ~------Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W 259 (514)
T KOG0166|consen 186 C------RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACW 259 (514)
T ss_pred H------HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2 222 23577777777776554 67778999999999976 33333567789999999999999999999999
Q ss_pred HHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHh
Q 002596 543 AIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (902)
Q Consensus 543 al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~ 622 (902)
+++.+.+...+.+. --.-..++|.++..+...
T Consensus 260 AlsyLsdg~ne~iq-~vi~~gvv~~LV~lL~~~----------------------------------------------- 291 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQ-MVIDAGVVPRLVDLLGHS----------------------------------------------- 291 (514)
T ss_pred HHHHHhcCChHHHH-HHHHccchHHHHHHHcCC-----------------------------------------------
Confidence 99988764433221 001112334444443332
Q ss_pred hcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhchHhhHHh
Q 002596 623 VDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQAR 701 (902)
Q Consensus 623 ~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (902)
+..++.-++.+++.++.+.+......+.. ..+|.+..++. ++...+|+.|+++++.++.+...++...
T Consensus 292 ----------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~-~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 292 ----------SPKVVTPALRAIGNIVTGSDEQTQVVINS-GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred ----------CcccccHHHhhccceeeccHHHHHHHHhc-ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 11122233444444444444444444432 46666777676 5556699999999999999888777766
Q ss_pred HH-HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 002596 702 LS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM--TVVLCLVPILKHSEELNKSLIENSAITLGR 778 (902)
Q Consensus 702 ~~-~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (902)
+. .++|.++..++.. ...+|..|+||++.++..+..+-..|+- .+++.+..+|...+ ..+...+..++..
T Consensus 361 ida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D---~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 361 IDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD---VKIILVALDGLEN 433 (514)
T ss_pred HHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC---hHHHHHHHHHHHH
Confidence 65 7999999999887 5789999999999998777655556653 57888888886664 4557777777777
Q ss_pred HhhhcCCccCc---ChHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHHc
Q 002596 779 LAWVCPELVSP---HMEHFMQPWCIALSMIRD--DTEKEDAFRGLCAMVKA 824 (902)
Q Consensus 779 l~~~~~~~~~~---~l~~~l~~~~~~l~~~~d--~~e~~~~~~~l~~li~~ 824 (902)
|.......-.+ .+.. +-.+++.|..++. .+|++.+|+....+|..
T Consensus 434 il~~~e~~~~~~~n~~~~-~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 434 ILKVGEAEKNRGTNPLAI-MIEEAGGLDKIENLQSHENEEIYKKAYKIIDT 483 (514)
T ss_pred HHHHHHHhccccccHHHH-HHHHccChhHHHHhhccccHHHHHHHHHHHHH
Confidence 77654332221 1222 2223444444333 23455666666666655
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-09 Score=122.00 Aligned_cols=755 Identities=15% Similarity=0.145 Sum_probs=398.4
Q ss_pred CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh----hhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHH
Q 002596 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT----AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (902)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~----~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~ 121 (902)
.+++...+..++. ..+.+..++..+.-.|...++. .|. ....+..+ ..++....++.+.+|+.+.+.++.+.
T Consensus 91 Fs~~~~~l~~~~~-~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~-~~il~~~~h~~pkvRk~a~~~i~~VL 166 (1176)
T KOG1248|consen 91 FSDTLNILAPFLT-AESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTEL-FGILAFAAHKKPKVRKAAQRGIAAVL 166 (1176)
T ss_pred HHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3456666666665 3356777777888888877754 487 23333333 33444456889999999999999998
Q ss_pred hhc---CcCchHHHHHHHHHHhc---c----CChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC
Q 002596 122 QLG---GIAGWLELLQALVTCLD---S----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (902)
Q Consensus 122 ~~~---~~~~w~~ll~~L~~~l~---~----~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 191 (902)
..- ++..-|........++. + .........+..|..++..++. ..++.+-..++.....
T Consensus 167 ~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~-----------~li~sl~e~lL~i~~~ 235 (1176)
T KOG1248|consen 167 KGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR-----------PLIKSLCEVLLNITTE 235 (1176)
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH-----------HHHHHHHHHHHhhccc
Confidence 753 33444544433333332 1 1112222344444444443322 2345555666777777
Q ss_pred CCHHHHHHHHHHHHHHhcccchhhHHhH-HHHHHHHHHhhCCC-CHHHHHHHH----HHHHHHHhhChhhhhhhHHHHHH
Q 002596 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDP-SAEVRKLVC----AAFNLLIEVRPSFLEPHLRNLFE 265 (902)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~vr~~~~----~~l~~l~~~~~~~~~~~l~~i~~ 265 (902)
.+..++..+++|+..+....|..+...+ ..++..+..+--+. +...-..=. ++...++...++.....++.+++
T Consensus 236 s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~ 315 (1176)
T KOG1248|consen 236 SPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFS 315 (1176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhh
Confidence 7889999999999999877766443322 23455555543222 111111111 22334445556666666777777
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhccCC-----------------chhhHHhhhhhhHHHHHhhccCChhhhhhhhhhc
Q 002596 266 YMLQVNKDTDDDVALEACEFWHSYFEAQL-----------------PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEE 328 (902)
Q Consensus 266 ~~~~~~~~~~~~v~~~al~~l~~l~~~~~-----------------~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~ 328 (902)
.+..+..+..+++...+-..+..+.+... .....-+++-+++..++..+.....
T Consensus 316 ~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~--------- 386 (1176)
T KOG1248|consen 316 LFFTILESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSG--------- 386 (1176)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcC---------
Confidence 66665555555555555555444433210 0011112222333333333332110
Q ss_pred cCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHH
Q 002596 329 DESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKD 408 (902)
Q Consensus 329 ~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 408 (902)
.+++|..... ++.- .++| ...+..-..+++.-....|++.+-.++|+=. -.+. .
T Consensus 387 --------~~l~~~L~~l-----~~lr-~~~d----~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s------~ 440 (1176)
T KOG1248|consen 387 --------PELTKTLEGL-----CDLR-ASPD----FFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAES------L 440 (1176)
T ss_pred --------HHHHHHHHHH-----HHhh-cCCC----CccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccc------c
Confidence 0011100000 0000 0000 1123356667777777777765545555422 1111 1
Q ss_pred HHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhh------ccCCC-ChH-HHHHHHHHHHhhHHHHhhhhcCCcchhhHHH
Q 002596 409 REAAVLALGAIAEGCIK-GLYPHLSEIVAFLIP------LLDDK-FPL-IRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (902)
Q Consensus 409 r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~------~l~d~-~~~-vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (902)
+..-.|.|-.+-.+... .+.-+...++|.... .++.+ ++. +-.+.++-|-.+...+.. .|.+...-+..
T Consensus 441 ~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~--~P~Dl~~sF~~ 518 (1176)
T KOG1248|consen 441 SFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCN--YPVDLAESFTD 518 (1176)
T ss_pred ccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhC--CCccHHHHHHH
Confidence 12222333333222211 122223333333222 12222 221 333333333333322222 12234444777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---------cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 002596 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEA---------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (902)
Q Consensus 480 il~~l~~~l~d~~~~v~~~a~~al~~l~~~~---------~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (902)
+.+.+...+... +..|...|.+|..+++.+ ...+..|-.+.++.+++.........+ ............
T Consensus 519 la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~ 596 (1176)
T KOG1248|consen 519 LAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEI 596 (1176)
T ss_pred HHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHH
Confidence 777777777654 599999999999999875 123556777888888888765433221 111121111111
Q ss_pred hc-ccCCchhhhhhhhHHHHHHHhcCC-CCCcch-----hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhh
Q 002596 551 VG-FELNQPVYLDILMPPLIAKWQQLP-NSDKDL-----FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (902)
Q Consensus 551 ~~-~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~-----~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~ 623 (902)
.. ..+. .-...+...+.+...... +.+..+ ...++.+..++...... +...++ .+.....+.
T Consensus 597 i~~~~~~--~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~---~vs~l~-~v~~~~e~~----- 665 (1176)
T KOG1248|consen 597 IRVDYFT--VTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES---QVSKLF-TVDPEFENS----- 665 (1176)
T ss_pred HHHHHhh--cccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch---hHHHHH-HhhHHhhcc-----
Confidence 11 0000 011122222333222211 111111 23333333333332221 112222 111111111
Q ss_pred cccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhcc--chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHh
Q 002596 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ--SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQAR 701 (902)
Q Consensus 624 ~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (902)
. +..+...+.+++..+... .....+..+ ..++..+...+++.....+...+.++..+.+.++.....+
T Consensus 666 -------~-~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 666 -------S-STKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred -------c-cHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 0 334555677777777766 222222222 2477777788888888889999999999999999888888
Q ss_pred HHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH--Hhhhh-hhhh---HHHHHHHHHHHhhcCChhhhhhHHHHHHHH
Q 002596 702 LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA--VKARQ-EISP---IVMTVVLCLVPILKHSEELNKSLIENSAIT 775 (902)
Q Consensus 702 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~--~~~~~-~~~~---~~~~il~~l~~~l~~~~~~~~~~~~~~~~~ 775 (902)
+++.+|.++-.+.+. +...|++|..+|-.++ ....+ .-.| -+...+..+..-+.... ..++...+.+
T Consensus 736 i~k~I~EvIL~~Ke~----n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~---~~~~as~Iva 808 (1176)
T KOG1248|consen 736 IPKLIPEVILSLKEV----NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDS---TRVVASDIVA 808 (1176)
T ss_pred HHHHHHHHHHhcccc----cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccH---HHHHHHHHHH
Confidence 899999888887665 6788888888877776 22211 1112 23333333333332222 1222222667
Q ss_pred HHHHhhhcCCccC-cChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhh-hhHHHHhhHhhcccccCcHHHHH
Q 002596 776 LGRLAWVCPELVS-PHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL-SSLVFMCRAIASWHEIRSEELHN 853 (902)
Q Consensus 776 l~~l~~~~~~~~~-~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~-~~l~~i~~~i~~~~~~~~~~~~~ 853 (902)
++.+.......+. +.+..++...+.+|.. +..+.+..|+.++..++..-|..++ +|++.++..+..|.......++.
T Consensus 809 i~~il~e~~~~ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 809 ITHILQEFKNILDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 7888775544432 4688899999999886 4456788899999999999998776 89999999999987654456777
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHH
Q 002596 854 EVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKL 886 (902)
Q Consensus 854 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 886 (902)
.+..++.-+-..||.+.-+.+ +|...++.|
T Consensus 888 Kvr~LlekLirkfg~~eLe~~---~pee~~klL 917 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKFGAEELESF---LPEEDMKLL 917 (1176)
T ss_pred HHHHHHHHHHHHhCHHHHHhh---CHHHHHHHH
Confidence 888888888888886455554 555555444
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.65 E-value=3.9e-11 Score=135.83 Aligned_cols=432 Identities=12% Similarity=0.062 Sum_probs=282.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhh-cCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhh
Q 002596 22 EQQISPSSTADKSQIWQQLQQYS-QFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (902)
Q Consensus 22 ~~~~s~~~~~~r~~a~~~L~~~~-~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~ 100 (902)
+.+.+.+.. .|+.|-+.+-.+. ..-+.......++..-.+.+.++|.+..+++.++.. ..++..-...+.+.+
T Consensus 39 ~~L~s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalLaINtl~K 112 (746)
T PTZ00429 39 NDLNGTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALLAVNTFLQ 112 (746)
T ss_pred HHHHCCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHHHHHHHHH
Confidence 333466666 7788888776543 333444444444433346799999999999976633 345544556678888
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhh
Q 002596 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (902)
Q Consensus 101 ~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (902)
-+.++++.+|-.+-.+++. ...++..+.+++.+.+++.+.++.+|..|..++.++....++.... ..
T Consensus 113 Dl~d~Np~IRaLALRtLs~---Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~----------~~ 179 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMC---IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ----------QD 179 (746)
T ss_pred HcCCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc----------cc
Confidence 8889999999986555554 4345677888899999999999999999999999998765543211 35
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhH
Q 002596 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (902)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 260 (902)
+.+.+..++.+.++.|...|+.+|..+.+..|+.+ ......+..++..+.+-++..+..++++|.. ..|.. ....
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~-~~e~ 254 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD-KESA 254 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC-cHHH
Confidence 67888889999999999999999999987666543 2334445666666665566666666666643 22321 1234
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCC
Q 002596 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (902)
Q Consensus 261 ~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (902)
..++..+...+++.+..|...|+.++..+.... ....++..+.++-+.++.... ++
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~---------------------- 310 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RD---------------------- 310 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CC----------------------
Confidence 567777777788888899999999888776541 123333333333333322211 00
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 002596 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (902)
Q Consensus 341 p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (902)
-++|-.+...+..+....+.-+.+. +..+.-..+++ ...|...+..|..++
T Consensus 311 ------------------------~eiqyvaLr~I~~i~~~~P~lf~~~-~~~Ff~~~~Dp----~yIK~~KLeIL~~La 361 (746)
T PTZ00429 311 ------------------------AETQYIVCKNIHALLVIFPNLLRTN-LDSFYVRYSDP----PFVKLEKLRLLLKLV 361 (746)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHCHHHHHHH-HHhhhcccCCc----HHHHHHHHHHHHHHc
Confidence 1267778888888887775443332 22222233343 457888888888877
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 002596 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC 500 (902)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~ 500 (902)
.. ..+..++..+.....+.+..++..+..++|+++..++ .....++..++..+.+... +...++
T Consensus 362 ne------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---------~~a~~cV~~Ll~ll~~~~~-~v~e~i 425 (746)
T PTZ00429 362 TP------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD---------SVAPDCANLLLQIVDRRPE-LLPQVV 425 (746)
T ss_pred Cc------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcCCch-hHHHHH
Confidence 52 3345566777777778889999999999999997553 3456777788777776443 344577
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHH--hc-cchhhHHHHHHHHHHHHHHhc
Q 002596 501 SAFATLEEEAAEELAPRLEIILQHLMMAF--GK-YQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 501 ~al~~l~~~~~~~~~p~l~~i~~~l~~~l--~~-~~~~~~~~~~~al~~l~~~~~ 552 (902)
..+..++...+.. + ++..+...+ .. .+...+....+.+|..+...+
T Consensus 426 ~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~ 474 (746)
T PTZ00429 426 TAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE 474 (746)
T ss_pred HHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh
Confidence 8888887765432 1 344444332 11 223455566788887766543
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.64 E-value=6.1e-12 Score=144.01 Aligned_cols=508 Identities=16% Similarity=0.133 Sum_probs=332.8
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhH
Q 002596 183 PRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (902)
Q Consensus 183 ~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 260 (902)
..+.+.+++. +..-|..++.-+..+..... .++.....+.+++.+++...++-+.-.+..+....++.+
T Consensus 7 ~el~~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~---- 77 (526)
T PF01602_consen 7 QELAKILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL---- 77 (526)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH----
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH----
Confidence 4455555555 66666666655544432211 122335566677778888999999888888888877733
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCC
Q 002596 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLK 340 (902)
Q Consensus 261 ~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~ 340 (902)
.-+++.+.+-+.++++.+|..|+.++..+... .. .+.+++.+...+..
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~----~~~l~~~v~~ll~~------------------------ 125 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRTP----EM----AEPLIPDVIKLLSD------------------------ 125 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HH----HHHHHHHHHHHHHS------------------------
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----ch----hhHHHHHHHHHhcC------------------------
Confidence 23566666778889999999999999988642 22 33334443333321
Q ss_pred cccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Q 002596 341 PRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA 420 (902)
Q Consensus 341 p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~ 420 (902)
+.+.+|+.|+.++..+....++.+-+.+++.+.+.+.+.+ +.++.+|+.++..+
T Consensus 126 ----------------------~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~---~~V~~~a~~~l~~i- 179 (526)
T PF01602_consen 126 ----------------------PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD---PSVVSAALSLLSEI- 179 (526)
T ss_dssp ----------------------SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS---HHHHHHHHHHHHHH-
T ss_pred ----------------------CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc---chhHHHHHHHHHHH-
Confidence 1246999999999999998766443227899999999988 99999999999999
Q ss_pred hcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHH
Q 002596 421 EGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEA 498 (902)
Q Consensus 421 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~ 498 (902)
....+.....++.+++.+.+.+.+++|.++...+.++..++..-. ... ..+++.+...+.+.++.|.-.
T Consensus 180 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~---------~~~~~~~~i~~l~~~l~s~~~~V~~e 250 (526)
T PF01602_consen 180 KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP---------EDADKNRIIEPLLNLLQSSSPSVVYE 250 (526)
T ss_dssp HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh---------hhhhHHHHHHHHHHHhhccccHHHHH
Confidence 322333236677788888888899999999999999998876432 122 567788888787777888888
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCC
Q 002596 499 ACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS 578 (902)
Q Consensus 499 a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 578 (902)
|+.++..+... .+.+..+++.+...+.+.+...+..+++++..++.... +.+... ...+..+.. ++
T Consensus 251 ~~~~i~~l~~~-----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~------~~v~~~-~~~~~~l~~--~~ 316 (526)
T PF01602_consen 251 AIRLIIKLSPS-----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP------PAVFNQ-SLILFFLLY--DD 316 (526)
T ss_dssp HHHHHHHHSSS-----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH------HHHGTH-HHHHHHHHC--SS
T ss_pred HHHHHHHhhcc-----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc------hhhhhh-hhhhheecC--CC
Confidence 88887754321 22677888999999997766677778888877765531 233311 122223332 23
Q ss_pred Ccch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHh
Q 002596 579 DKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIES 657 (902)
Q Consensus 579 ~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~ 657 (902)
+..+ ..+++.+..++..-. ...+++.+.+.+... .|.+++..+...++.++.........
T Consensus 317 d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~l~~~-------------~d~~~~~~~i~~I~~la~~~~~~~~~ 377 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLANESN------VKEILDELLKYLSEL-------------SDPDFRRELIKAIGDLAEKFPPDAEW 377 (526)
T ss_dssp SHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHC---------------HHHHHHHHHHHHHHHHHHGSSHHH
T ss_pred ChhHHHHHHHHHhhcccccc------hhhHHHHHHHHHHhc-------------cchhhhhhHHHHHHHHHhccCchHHH
Confidence 4444 567777777665322 244566666555321 15568888888899998888766655
Q ss_pred hhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHH
Q 002596 658 LVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (902)
Q Consensus 658 ~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~ 737 (902)
+++ .+...+...+..+...+...+.++....++.-. .++..+.+.+.+-. ...++..++|.+|+.+.
T Consensus 378 ~v~------~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~----~~l~~L~~~l~~~~---~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 378 YVD------TLLKLLEISGDYVSNEIINVIRDLLSNNPELRE----KILKKLIELLEDIS---SPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHH------HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHH----HHHHHHHHHHTSSS---SHHHHHHHHHHHHHHCH
T ss_pred HHH------HHHHhhhhccccccchHHHHHHHHhhcChhhhH----HHHHHHHHHHHHhh---HHHHHHHHHhhhcccCC
Confidence 544 444555555566677777778888876654322 34555555555422 46789999999999987
Q ss_pred hhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhcc-CCCCcHHHHHHHH
Q 002596 738 KARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALS-MIRDDTEKEDAFR 816 (902)
Q Consensus 738 ~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~-~~~d~~e~~~~~~ 816 (902)
..+. .. ....++..+.+.+... +..++..+..++.++....|..- ..+.++..+..... ...|.+.+..++.
T Consensus 445 ~~~~-~~-~~~~~~~~l~~~~~~~---~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~ 517 (526)
T PF01602_consen 445 LIEN-TE-SAPDILRSLIENFIEE---SPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRARE 517 (526)
T ss_dssp HHTT-TT-HHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHH
T ss_pred cccc-cc-cHHHHHHHHHHhhccc---cHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 7654 11 5666677777777655 36789999999999999988531 12344444444433 1346677777766
Q ss_pred HHH
Q 002596 817 GLC 819 (902)
Q Consensus 817 ~l~ 819 (902)
.+.
T Consensus 518 y~~ 520 (526)
T PF01602_consen 518 YLR 520 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 40
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.60 E-value=1.4e-13 Score=143.72 Aligned_cols=275 Identities=19% Similarity=0.311 Sum_probs=190.2
Q ss_pred HHHHHHHHHHh-cccchhhHHhHHHHHHHHHHhhC---------CCC-----HHHHHHHHHHHHHHHhhChhhhhhhHHH
Q 002596 198 KLSLGSVNQFI-MLMPSALFVSMDQYLQGLFLLSN---------DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (902)
Q Consensus 198 ~~al~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~---------~~~-----~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 262 (902)
...++++..+. ..+|+.+.+++..++..+...+. |++ +.++..+|+.+...++.+.+.+.++++.
T Consensus 58 ~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~ 137 (370)
T PF08506_consen 58 KLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPT 137 (370)
T ss_dssp HHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 34688787888888776665431 111 3678889999999999999999999999
Q ss_pred HHHHHHhhhcC-----CCHHHHHHHHHHHHHhhccCCchhhH--HhhhhhhHHHH-HhhccCChhhhhhhhhhccCCCCC
Q 002596 263 LFEYMLQVNKD-----TDDDVALEACEFWHSYFEAQLPHENL--KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPD 334 (902)
Q Consensus 263 i~~~~~~~~~~-----~~~~v~~~al~~l~~l~~~~~~~~~~--~~~l~~l~~~l-l~~l~~~~~d~~~~~~~~~~~~~~ 334 (902)
++..+++.+.. ..+.+...|+.|+.++++.......+ ++++..|+..+ ++.|..+++|+|.|++||.|
T Consensus 138 fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E---- 213 (370)
T PF08506_consen 138 FVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE---- 213 (370)
T ss_dssp HHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH----
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH----
Confidence 99888877532 24567788999999988763222222 68889998854 69999999999999988763
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc---CCCCchHHHHH
Q 002596 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA---SGDEAWKDREA 411 (902)
Q Consensus 335 ~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~r~~ 411 (902)
|+|..+ |.. +..+.|++|...+..+++.+++.+.+.+...+.++++. ....+|+.+.+
T Consensus 214 ---YIrrd~-----------e~s-----d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 214 ---YIRRDL-----------EGS-----DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp ---HHHHHS-----------CSS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred ---HHHhhc-----------ccc-----ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 444211 111 12378999999999999999988888888888887761 11234999999
Q ss_pred HHHHHHHHHhcchh---hh---h---hhHHHHHHHHhhccC---CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHH
Q 002596 412 AVLALGAIAEGCIK---GL---Y---PHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (902)
Q Consensus 412 a~~~l~~l~~~~~~---~~---~---~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (902)
|+..+++++..... +. . +...-....+++.|+ +.+|.+|..|++.+..|-..++ .+.+..
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~--------~~~l~~ 346 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP--------KEQLLQ 346 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---------HHHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC--------HHHHHH
Confidence 99999999875421 11 1 111112223333333 6789999999999998887653 567889
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q 002596 480 VLMGLLKRILDTNKRVQEAACSAF 503 (902)
Q Consensus 480 il~~l~~~l~d~~~~v~~~a~~al 503 (902)
+++.++..|.+++..|+..|+.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999999999999998775
No 41
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.52 E-value=1e-10 Score=130.75 Aligned_cols=538 Identities=17% Similarity=0.174 Sum_probs=353.6
Q ss_pred HHHHhhhhh---cCChHHHHHHHHHHHHHHhhcCcCch-HHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCC
Q 002596 95 KSELLPCLG---AADRHIRSTVGTIVSVVVQLGGIAGW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (902)
Q Consensus 95 ~~~ll~~l~---~~~~~vr~~~a~~l~~i~~~~~~~~w-~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~ 170 (902)
+..+++.+. +.+..++..++.-++.+....+.... .-+++.+..........+|+.++..+..++...+....
T Consensus 119 r~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--- 195 (759)
T KOG0211|consen 119 RLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL--- 195 (759)
T ss_pred hhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH---
Confidence 444555443 56778888888888888777644443 34667777777777778999999999888887665321
Q ss_pred CCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc-hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002596 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (902)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~ 249 (902)
...+.|.+.......--.-|..++..+.......+ +.+.... .+...++.+|..+.+|..+.+-+..++
T Consensus 196 -------~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el---r~~~~~lc~d~~~~Vr~~~a~~l~~~a 265 (759)
T KOG0211|consen 196 -------REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL---RPIVQSLCQDDTPMVRRAVASNLGNIA 265 (759)
T ss_pred -------HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH---HHHHHhhccccchhhHHHHHhhhHHHH
Confidence 14445544444444223457778788877766555 3333333 455556677888999999999998888
Q ss_pred hhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhcc
Q 002596 250 EVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (902)
Q Consensus 250 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (902)
...+.. .....+++...+...|..+.+|..|.+....+...-... . +....+.+.++..
T Consensus 266 ~~~~~~--~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~-d~~~~~~~~l~~~---------------- 324 (759)
T KOG0211|consen 266 KVLESE--IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--D-DVVKSLTESLVQA---------------- 324 (759)
T ss_pred HHHHHH--HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--h-hhhhhhhHHHHHH----------------
Confidence 766652 222345555556667777889999988877766541111 0 1112222222110
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHH
Q 002596 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKD 408 (902)
Q Consensus 330 ~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~ 408 (902)
.++..|.+|.........+...+|. ...+...+.....+.+.. |..
T Consensus 325 ------------------------------~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~---~e~ 371 (759)
T KOG0211|consen 325 ------------------------------VEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEE---WEV 371 (759)
T ss_pred ------------------------------hcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchh---hhh
Confidence 0124688999999999999999976 344566777888888888 999
Q ss_pred HHHHHHHHHHHHhcchhh--hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHH
Q 002596 409 REAAVLALGAIAEGCIKG--LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (902)
Q Consensus 409 r~~a~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 486 (902)
|.+...-...+....... ..-....++|.+.....|.++.||.+.+..+......++ ........++.+..
T Consensus 372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~llp~~~~ 444 (759)
T KOG0211|consen 372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-------KERTISELLPLLIG 444 (759)
T ss_pred hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-------cCcCccccChhhhh
Confidence 999887777666544321 112334467888888999999999998666555444333 34456677888888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhh
Q 002596 487 RILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILM 565 (902)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll 565 (902)
.++|..+.||......+..+.... ...+.-+....++.+...-.+..++++..+.+.+-.++...|..+.++. +
T Consensus 445 ~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-----~ 519 (759)
T KOG0211|consen 445 NLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-----L 519 (759)
T ss_pred hcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-----H
Confidence 899999999998876664443332 2234445666777777766666778888888999888888775554433 2
Q ss_pred HHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhH
Q 002596 566 PPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLL 644 (902)
Q Consensus 566 ~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l 644 (902)
..+...|-. +....+ .++..++..++..+|... +...+++.++....+ +.+-.|...++.+
T Consensus 520 ~~l~~~~l~--d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q--------------~~y~~R~t~l~si 581 (759)
T KOG0211|consen 520 AELLRTWLP--DHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQ--------------DNYLVRMTTLFSI 581 (759)
T ss_pred HHHHHhhhh--hhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcC--------------cccchhhHHHHHH
Confidence 233333321 112223 567788888888888433 344555555433221 1355677788889
Q ss_pred HHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhH
Q 002596 645 SGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSV 724 (902)
Q Consensus 645 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v 724 (902)
..++..+|..+.. ..++|.+.....|+.+.||-.+...+-++.+....... =..+.|.+....+++ +.++
T Consensus 582 ~~la~v~g~ei~~----~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~--~~~v~pll~~L~~d~----~~dv 651 (759)
T KOG0211|consen 582 HELAEVLGQEITC----EDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR--DEEVLPLLETLSSDQ----ELDV 651 (759)
T ss_pred HHHHHHhccHHHH----HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH--HHHHHHHHHHhccCc----ccch
Confidence 9999999986532 14788888888999999999999999988887654221 124455555554555 6789
Q ss_pred hhhHHHHHHHHHHhh
Q 002596 725 ANNACWAIGELAVKA 739 (902)
Q Consensus 725 ~~~a~~alg~l~~~~ 739 (902)
|-.|..+.|.+....
T Consensus 652 r~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 652 RYRAILAFGSIELSR 666 (759)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999998886543
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.1e-11 Score=130.07 Aligned_cols=358 Identities=17% Similarity=0.146 Sum_probs=253.3
Q ss_pred HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-----CchHHHHHHHHHHhc-cCChhhhhHHHHHHHHHHhhchhcccc
Q 002596 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDS 168 (902)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-----~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~ 168 (902)
.+..+..+.+.+...+..+...+..+...+.. ..+..++|.+.+++. +.++..+..|.-+|..|+....+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 34555666666666677777777777666521 123467888999886 456889999999999998876553211
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 002596 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSA-EVRKLVCAAF 245 (902)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~-~vr~~~~~~l 245 (902)
+ .-..-+|.+.+++.+++..|+..|+.+|++++...|. +..++ ...+..|+.++..+.. ...+.+..+|
T Consensus 148 -v------v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 148 -V------VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred -c------ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 1 1145688999999999999999999999999866443 33322 1335666666654443 5777788888
Q ss_pred HHHHhhC-hhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhh
Q 002596 246 NLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (902)
Q Consensus 246 ~~l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~ 324 (902)
..++... |.--...+..+++.+...+.+.|+++...|+-.+..+..... +.+. .
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n--e~iq--------~--------------- 274 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN--EKIQ--------M--------------- 274 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh--HHHH--------H---------------
Confidence 8888765 332224566788888888888999998888877766654410 0000 0
Q ss_pred hhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCC
Q 002596 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (902)
Q Consensus 325 ~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (902)
. +--.++|.+...|...+
T Consensus 275 --------------------------------------------------------v----i~~gvv~~LV~lL~~~~-- 292 (514)
T KOG0166|consen 275 --------------------------------------------------------V----IDAGVVPRLVDLLGHSS-- 292 (514)
T ss_pred --------------------------------------------------------H----HHccchHHHHHHHcCCC--
Confidence 0 00124566667777777
Q ss_pred chHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccC-CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHH
Q 002596 405 AWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (902)
Q Consensus 405 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~ 482 (902)
...+-.|++++|.|+.|........+. ..+|.+...+. ++...+|..|||+++++...-... ...-.-..++|
T Consensus 293 -~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q----iqaVida~l~p 367 (514)
T KOG0166|consen 293 -PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ----IQAVIDANLIP 367 (514)
T ss_pred -cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH----HHHHHHcccHH
Confidence 788889999999999887765543333 37788888877 667779999999999998754432 12223347999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Q 002596 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (902)
.|+..++..+.++|..|+||+++++..+.+.-..|+ ..+++.+..+|.-.+.+....+++++..+.+..+
T Consensus 368 ~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 368 VLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 999999998899999999999999988765555555 3478888888877777777788999988877544
No 43
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.2e-07 Score=107.46 Aligned_cols=689 Identities=15% Similarity=0.149 Sum_probs=362.9
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh------------HHHHHHHhhccCCCCHHHH-HHHH
Q 002596 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDF------------NNYLAFILARAEGKSVEIR-QAAG 72 (902)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~------------~~~l~~il~~~~~~~~~~R-~~a~ 72 (902)
.|+ .....+.+..++.-+.++.+- +|++|...+...-++|.| ...++..+..--..+...- .-..
T Consensus 130 aW~-~~~t~~~~~~il~~~~h~~pk-vRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L 207 (1176)
T KOG1248|consen 130 AWS-YSSTKTELFGILAFAAHKKPK-VRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSL 207 (1176)
T ss_pred hhc-cccHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 587 666677888888888888888 999999999886554322 1222233321101011111 1112
Q ss_pred HHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc----cC-Ch--
Q 002596 73 LLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD----SN-DI-- 145 (902)
Q Consensus 73 ~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~----~~-~~-- 145 (902)
.+| +....+.+....+.+.+.++...+..+..++..+-+++..+++..+...-.++...++.++. +. |+
T Consensus 208 ~Ll----~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~ 283 (1176)
T KOG1248|consen 208 MLL----RDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLL 283 (1176)
T ss_pred HHH----HHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHH
Confidence 222 23333356677788888999999999999999999999999988755333333333333332 32 22
Q ss_pred -----hhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002596 146 -----NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (902)
Q Consensus 146 -----~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (902)
.+...|..+|...=++.. -+.++.+++.++.++.+...++-..|-+|+..+....+........
T Consensus 284 t~~W~~v~~~~~~~la~~q~~~~-----------~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~ 352 (1176)
T KOG1248|consen 284 TVAWLKVLNEAHDILATLQEEKA-----------LQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCS 352 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHH-----------HHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHH
Confidence 222333333322211110 1235778888888888889999999999999988654431111111
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHH------------HHHHHHHHHHH
Q 002596 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDD------------VALEACEFWHS 288 (902)
Q Consensus 221 ~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~------------v~~~al~~l~~ 288 (902)
. .+..+++-.-..+-..+++++..+.+.+.+...|++...++.+...-.+++.. ++...-+.+.+
T Consensus 353 ~---~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~ 429 (1176)
T KOG1248|consen 353 K---QLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLT 429 (1176)
T ss_pred H---HHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHH
Confidence 1 12233333334566677777777777777766676665555543322222111 01111111111
Q ss_pred hhccC--------------------CchhhHHhhhhhhHHHHHhhcc----CChhh----------hhhhhhhccCCCCC
Q 002596 289 YFEAQ--------------------LPHENLKEFLPRLVPVLLSNMI----YADDD----------ESLVEAEEDESLPD 334 (902)
Q Consensus 289 l~~~~--------------------~~~~~~~~~l~~l~~~ll~~l~----~~~~d----------~~~~~~~~~~~~~~ 334 (902)
+.... .....+.-|...++|....... ..+.. .+.|.
T Consensus 430 ~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~--------- 500 (1176)
T KOG1248|consen 430 ILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWS--------- 500 (1176)
T ss_pred HcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHH---------
Confidence 11100 0001111223334443322111 00000 01221
Q ss_pred CCCCCCcccccccCCCCCCCCCCCc----cccccccHHHHHHHHHHHHHhhc---Cc-----ch----hhhhHHHHHHhh
Q 002596 335 RDQDLKPRFHSSRLHGSENPEDDDD----DIVNVWNLRKCSAAALDVLSNVF---GD-----EI----LPTLMPVIQAKL 398 (902)
Q Consensus 335 ~~~~i~p~~~~~~~~~~~~~~~dd~----d~~~~~~~r~~a~~~l~~l~~~~---~~-----~~----~~~l~~~l~~~l 398 (902)
+.|.|...-..-.+.+-+.-- --...-..|...+..|..+.... .+ ++ -...+|.+.++.
T Consensus 501 ----LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~y 576 (1176)
T KOG1248|consen 501 ----LLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVY 576 (1176)
T ss_pred ----hChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHh
Confidence 223333221100000000000 00000026777777777776664 10 11 123444444444
Q ss_pred ccCCC---CchHHHHHHHHHHH-HHHhcchhhhhhhHHHHHHHHhhccCCCCh----HHHHHHHHHHHhhHHHHhhhhcC
Q 002596 399 SASGD---EAWKDREAAVLALG-AIAEGCIKGLYPHLSEIVAFLIPLLDDKFP----LIRSISCWTLSRFSKFIVQDIGH 470 (902)
Q Consensus 399 ~~~~~---~~~~~r~~a~~~l~-~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~~~~~~~ 470 (902)
.+... +....|..-+..+. ...+.++..+...+..-+. ....+.+. ..+.+-+..+..++...
T Consensus 577 tq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~---e~as~~~~s~~~~~~~slLdl~~~~a~~~------ 647 (1176)
T KOG1248|consen 577 TQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAG---ELASDLDESVASFKTLSLLDLLIALAPVQ------ 647 (1176)
T ss_pred cCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH---hHhccchhhhhhHHHHHHHHHHHhhhccc------
Confidence 43220 11233333333333 2333333333222222222 22223222 22222222222222221
Q ss_pred CcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 002596 471 QNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE--AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (902)
Q Consensus 471 ~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~~--~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l 547 (902)
...++..++ .+..... ..+..+|..+...|..++.. +......++..|.+.+.+.++......+...+.++..+
T Consensus 648 --~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L 724 (1176)
T KOG1248|consen 648 --TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRL 724 (1176)
T ss_pred --cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 223333444 2333332 34689999999999988876 23345667888999999999888888888999999999
Q ss_pred HHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHH---HhccccccccHHHHHHHHHHHHHHHHHhhc
Q 002596 548 ADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQ---ALGAGFTQFAQPVFQRCINIIQTQQLAKVD 624 (902)
Q Consensus 548 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~---~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~ 624 (902)
.+..+.... .++...+|-++-.++.. +......+++|+-.++. .+..+-.| .+..++..+..+.....
T Consensus 725 ~~~~~~e~~--~~i~k~I~EvIL~~Ke~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~---- 795 (1176)
T KOG1248|consen 725 LKLLSAEHC--DLIPKLIPEVILSLKEV--NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLV---- 795 (1176)
T ss_pred HHhccHHHH--HHHHHHHHHHHHhcccc--cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhc----
Confidence 998874333 34444444333222221 11222455666655552 22222222 23344444444443210
Q ss_pred ccccCCCCchh-HHHHHhhhHHHHHHHHhhhHH-hhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchH-hhHHh
Q 002596 625 SVAAGAQYDKE-FVVCCLDLLSGLAEGLGSGIE-SLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQAR 701 (902)
Q Consensus 625 ~~~~~~e~d~~-~~~~al~~l~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~ 701 (902)
+ |.. .+.+.+-++..++..++..+. ++++ .++..+..++.....+++.+|++++..++..++. .+.++
T Consensus 796 ----g---d~~~~~as~Ivai~~il~e~~~~ld~~~l~--~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~ 866 (1176)
T KOG1248|consen 796 ----G---DSTRVVASDIVAITHILQEFKNILDDETLE--KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH 866 (1176)
T ss_pred ----c---cHHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh
Confidence 1 222 222224455556555544332 3444 3778888888999999999999999999999985 56799
Q ss_pred HHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhhcCC
Q 002596 702 LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHS 761 (902)
Q Consensus 702 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~ 761 (902)
++.++|.+...+.+- ...+|..+-..+..++...| +.+.+|++.-...+++.+...
T Consensus 867 ~~~LL~sll~ls~d~----k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 867 LEELLPSLLALSHDH----KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHH
Confidence 999999999987765 45788888888888888776 557888887777777766544
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.49 E-value=7.8e-08 Score=105.33 Aligned_cols=690 Identities=14% Similarity=0.128 Sum_probs=357.6
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhc--CChHHHHHHHHHHHHHHhhcCcCch--
Q 002596 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIAGW-- 129 (902)
Q Consensus 54 ~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~~~~~~w-- 129 (902)
+..|....+.++++|..|...|| .|+. ++. ....|-....+ .+-..|+.+.-.+.....+.|....
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~-----qle~-~~~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~ 76 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLK-----QLEL-TEG----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEA 76 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHh-----cccc-chH----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhh
Confidence 34443333678999999999885 4542 222 44455554433 3556788777666666654321111
Q ss_pred -----------H-HHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHH
Q 002596 130 -----------L-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLR 197 (902)
Q Consensus 130 -----------~-~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr 197 (902)
. -+...|...+.+++...|.++..+++.|+.. ++|. .+++++|.++.++++.+..--
T Consensus 77 fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~-------D~Pd----~WpElv~~i~~~l~~~n~n~i 145 (1005)
T KOG2274|consen 77 FRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAV-------DYPD----EWPELVPFILKLLSSGNENSI 145 (1005)
T ss_pred ccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhc-------cCch----hhHHHHHHHHHHHhccchhhh
Confidence 1 1335566666677778888888888877653 2322 468999999999999888888
Q ss_pred HHHHHHHHHHhcccchhhHH-----hHHHHHHHHHHhhCCCCHHHHHHHH--HHH---HHHHhhChhh--------hhhh
Q 002596 198 KLSLGSVNQFIMLMPSALFV-----SMDQYLQGLFLLSNDPSAEVRKLVC--AAF---NLLIEVRPSF--------LEPH 259 (902)
Q Consensus 198 ~~al~~l~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~vr~~~~--~~l---~~l~~~~~~~--------~~~~ 259 (902)
..|+++|..+....-..... .++. +..++......+...|..+. ..+ ..+++.+.+. +.+.
T Consensus 146 ~~am~vL~el~~ev~~ee~~~~~~~~l~~-m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~ 224 (1005)
T KOG2274|consen 146 HGAMRVLAELSDEVDVEEMFFVGPVSLAE-MYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI 224 (1005)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccchhh-hhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999887432111110 1111 23344444434333333333 222 2233322222 2222
Q ss_pred HHHHHHHHHhhhc--C-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCC
Q 002596 260 LRNLFEYMLQVNK--D-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (902)
Q Consensus 260 l~~i~~~~~~~~~--~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~ 336 (902)
+..++..+.+.+. + .+-..+...+.++..+.+. .+..+.|++...++...+.....-.-.-.+.-+.++
T Consensus 225 l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~n--fp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e------ 296 (1005)
T KOG2274|consen 225 LNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVEN--FPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTE------ 296 (1005)
T ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHh--hHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccc------
Confidence 2333332222222 2 2334677778888888776 666667777666665543322111000000000000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC-----c---chhhhhHHHHHHhhc---------
Q 002596 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----D---EILPTLMPVIQAKLS--------- 399 (902)
Q Consensus 337 ~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~-----~---~~~~~l~~~l~~~l~--------- 399 (902)
...-++ -+. |+ ...++-.+....+.-+...+. + ..++.++..+..+++
T Consensus 297 ~~~~~~---------~ds--d~----e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w 361 (1005)
T KOG2274|consen 297 DSYDAR---------YDS--DP----EEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVW 361 (1005)
T ss_pred cCcccc---------cCC--ch----hhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 000000 000 00 111233333333333332221 0 123333333322221
Q ss_pred ---------cCCCCchHHHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHh-----hccC-CCChHHHHHHHHHHHhhHHH
Q 002596 400 ---------ASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLI-----PLLD-DKFPLIRSISCWTLSRFSKF 463 (902)
Q Consensus 400 ---------~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~-----~~l~-d~~~~vr~~a~~~l~~~~~~ 463 (902)
++++ ....|..+...+-+++...+. .+.+.....-..+. ..++ ...+....+..+....+...
T Consensus 362 ~sD~~~fV~dEd~-~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~ 440 (1005)
T KOG2274|consen 362 TSDVNQFVADEDD-GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID 440 (1005)
T ss_pred hccHHHhhccCCC-CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC
Confidence 1111 134555555555554443331 12222211111111 1112 22345555655555444321
Q ss_pred HhhhhcCCcchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchh-hHHHHH
Q 002596 464 IVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVY 541 (902)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~-~~~~~~ 541 (902)
.....++..++..+...+.. ..|..-.++..+++.|.+... ...+.+..++...++.+...+.. .+..+.
T Consensus 441 -------~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~-~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~ 512 (1005)
T KOG2274|consen 441 -------DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV-INPQLLQHFLNATVNALTMDVPPPVKISAV 512 (1005)
T ss_pred -------cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhccCCCCchhHHHH
Confidence 11334455555555555543 346666688888887766421 12344556666666666654433 333444
Q ss_pred HHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCC-CCcc-hhhHHHHHHHHHHHhcccccc-ccHHHHHHHHHHHHHH
Q 002596 542 DAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN-SDKD-LFPLLECFTSIAQALGAGFTQ-FAQPVFQRCINIIQTQ 618 (902)
Q Consensus 542 ~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~-~~~~l~~l~~i~~~~g~~f~~-~~~~i~~~l~~~l~~~ 618 (902)
.++...+ +. ..+..+.|.+++.+.+... ...+ +.-++|+++.+++. .++|.. .-..+.|..+.++...
T Consensus 513 ~~~~~~~---~~-----~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~ 583 (1005)
T KOG2274|consen 513 RAFCGYC---KV-----KVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKY 583 (1005)
T ss_pred HHHHhcc---Cc-----eeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHh
Confidence 4444333 33 3334445555554444321 2222 35678888877753 333432 2345667776666543
Q ss_pred HHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCC----hHHHHHHHHHHHHHHhhc
Q 002596 619 QLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA----SDVRQSAFALLGDLARVC 694 (902)
Q Consensus 619 ~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~vr~~a~~~l~~l~~~~ 694 (902)
. + |+.+...+-+++..+.+.. ....++.. ..+|.+...++.+. .....-++.+|..+.++.
T Consensus 584 s-----------~-DP~V~~~~qd~f~el~q~~-~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t 648 (1005)
T KOG2274|consen 584 S-----------E-DPQVASLAQDLFEELLQIA-ANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT 648 (1005)
T ss_pred c-----------C-CchHHHHHHHHHHHHHHHH-HhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence 2 1 5555555666666666521 12222322 25555555555433 566678899999999988
Q ss_pred hHhhH-HhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhh-----hH--HHHHHHHHHHhhcCChhhhh
Q 002596 695 PVHLQ-ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS-----PI--VMTVVLCLVPILKHSEELNK 766 (902)
Q Consensus 695 ~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~-----~~--~~~il~~l~~~l~~~~~~~~ 766 (902)
+..+. ......+|.+.++.-.++ +.++-+++-.||..++....+++. |- +--+++.+..+|+ +
T Consensus 649 p~pL~~~l~~~~FpaVak~tlHsd---D~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p----- 719 (1005)
T KOG2274|consen 649 PSPLPNLLICYAFPAVAKITLHSD---DHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-P----- 719 (1005)
T ss_pred CCCccHHHHHHHhHHhHhheeecC---ChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-C-----
Confidence 86543 345678899988875553 346778888999888766443321 11 1234444444443 2
Q ss_pred hHHHHHHHHHHHHhh----hcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhh
Q 002596 767 SLIENSAITLGRLAW----VCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL 830 (902)
Q Consensus 767 ~~~~~~~~~l~~l~~----~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~ 830 (902)
..-+.++..+|+++. +.+..+.|.+++++..++++|...+.-..-......|+.++..++...+
T Consensus 720 ~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l 787 (1005)
T KOG2274|consen 720 ETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLL 787 (1005)
T ss_pred ccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHH
Confidence 233555667777764 6788888999999999999998765544455666777777776665443
No 45
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.8e-07 Score=96.41 Aligned_cols=337 Identities=12% Similarity=0.067 Sum_probs=212.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCch
Q 002596 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (902)
Q Consensus 479 ~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~ 558 (902)
-+++.++..++++..-.|.+||..++.+.+..++. ..+-++++...+++++...+++..+..|+..+......+
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h---- 533 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSH---- 533 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhh----
Confidence 35666667778887888999999999996655432 134566777778888877778888888888887654322
Q ss_pred hhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHH-HHHH-hhcccccCCCCchhH
Q 002596 559 VYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQT-QQLA-KVDSVAAGAQYDKEF 636 (902)
Q Consensus 559 ~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~-~~~~-~~~~~~~~~e~d~~~ 636 (902)
+-+...+|..++.+-..+ ++-++..+-.|+..++..+..+..||++++...+.+.+-. .... ...+|+.+.-.|+++
T Consensus 534 ~k~sahVp~tmekLLsLS-n~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqm 612 (970)
T COG5656 534 EKFSAHVPETMEKLLSLS-NTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQM 612 (970)
T ss_pred HHHHhhhhHHHHHHHHhc-ccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 566677777777666554 3445557778899999999999999999998888763221 1111 111222222226665
Q ss_pred H-HHHhhhHHHHHHHHhhhH--HhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhc
Q 002596 637 V-VCCLDLLSGLAEGLGSGI--ESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQL 713 (902)
Q Consensus 637 ~-~~al~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l 713 (902)
. .+.+..+..++-++.... -.++.+ .+.|.+...+.+...+.-+.|+.++....- +...+.|..+.++..+.+++
T Consensus 613 aasGiL~T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 613 AASGILRTIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcc
Confidence 4 355666666666655432 223332 577888888888888888888887766443 33466688889999999888
Q ss_pred CCCCCccchhHhhhHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCC-ccCc
Q 002596 714 NTPKLKETVSVANNACWAIGELAVKARQEIS---PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE-LVSP 789 (902)
Q Consensus 714 ~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~---~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~ 789 (902)
.++.. ...-..+.-++..+...++.+|. -|..-+.+.....+.+..+.- .=+..+|..+-.++....+ ...+
T Consensus 691 ~~~~t---~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l-~D~~~vc~i~e~l~Ln~rd~Ll~q 766 (970)
T COG5656 691 IDEIT---AVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFL-EDFIGVCRIIESLILNIRDELLSQ 766 (970)
T ss_pred cccch---hhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhH-HHHHHHHHHHHHHHHHccchhHHh
Confidence 87731 24557778899999988876552 244455555555565443211 2234455566666666555 3444
Q ss_pred ChHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHHcCchh
Q 002596 790 HMEHFMQPWCIALSMIR-DDTEKEDAFRGLCAMVKANPSG 828 (902)
Q Consensus 790 ~l~~~l~~~~~~l~~~~-d~~e~~~~~~~l~~li~~~p~~ 828 (902)
|++.++...-+.+..+. .......+++...+-+-.+|..
T Consensus 767 y~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~e 806 (970)
T COG5656 767 YLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKE 806 (970)
T ss_pred hhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHH
Confidence 56655555443444322 1233445555555555556754
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.44 E-value=7.4e-10 Score=123.90 Aligned_cols=576 Identities=15% Similarity=0.108 Sum_probs=349.4
Q ss_pred chHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002596 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (902)
Q Consensus 128 ~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~ 207 (902)
.|-..+..+.......+...|..+..-+..+.-..+... -...++|.+.+.. +....|+..+..-++.+
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~----------tr~~lipf~~e~~-~~~dev~~~~a~~~~~~ 147 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVER----------TRLELIPFLTEAE-DDEDEVLLDLAEQLGTF 147 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccch----------hhhhhhhHHHHhc-cchhHHHHHHHHHhccc
Confidence 355566666666666666666666666655544433321 1256788888888 66777888877777777
Q ss_pred hcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 002596 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (902)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~ 287 (902)
...... ..+...+++.+..++.+....+|..+.+.+..++...++.-. ...+++.+.......--.-|..++..+.
T Consensus 148 ~~~v~~--~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~--~~~lv~l~~~l~~~d~~~sr~sacglf~ 223 (759)
T KOG0211|consen 148 LPDVGG--PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL--REHLVPLLKRLATGDWFQSRLSACGLFG 223 (759)
T ss_pred chhccc--hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH--HHHHHHHHHHccchhhhhcchhhhhhhH
Confidence 654322 112223355555566566667899999998888776665422 2233333333322211123444444443
Q ss_pred HhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 002596 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (902)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~ 367 (902)
...... ....++.-+..+...+ .. |+ ...+
T Consensus 224 ~~~~~~-~~~~vk~elr~~~~~l---c~-----------------------------------------d~-----~~~V 253 (759)
T KOG0211|consen 224 KLYVSL-PDDAVKRELRPIVQSL---CQ-----------------------------------------DD-----TPMV 253 (759)
T ss_pred HhccCC-ChHHHHHHHHHHHHhh---cc-----------------------------------------cc-----chhh
Confidence 332220 0012221111111110 00 11 1258
Q ss_pred HHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCC
Q 002596 368 RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (902)
Q Consensus 368 r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (902)
|.++++-++.++..++. .....+++.+.++..+.. -.+|++|.-.+..+........ +....+.+.+++...|++
T Consensus 254 r~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq---dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 254 RRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ---DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGS 329 (759)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch---hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChh
Confidence 99999999999999976 345667788888888877 8999999999999887665432 566678889999999999
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccc--hHhHHHHHHH
Q 002596 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQH 524 (902)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--~p~l~~i~~~ 524 (902)
.++|+........+...+.+ ...-....+.....++|....+|.++..-...++......- .-....+++.
T Consensus 330 ~~v~~~~~~~~~~L~~~~~~-------~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~ 402 (759)
T KOG0211|consen 330 WRVSYMVADKFSELSSAVGP-------SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPE 402 (759)
T ss_pred HHHHHHHhhhhhhHHHHhcc-------ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHH
Confidence 99999987776666665542 11223445566667888888999988888888877654221 1123455677
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-cccc
Q 002596 525 LMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQ 602 (902)
Q Consensus 525 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~-~f~~ 602 (902)
+.....+....++......+..+....|. +.-++.+.|.++..++. +.+.+ ..++..++..-...+. +...
T Consensus 403 ~~~lv~d~~~~vr~a~a~~~~~~~p~~~k----~~ti~~llp~~~~~l~d---e~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 403 VQVLVLDNALHVRSALASVITGLSPILPK----ERTISELLPLLIGNLKD---EDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred HHHHHhcccchHHHHHhccccccCccCCc----CcCccccChhhhhhcch---hhHHHHHhhHHHHHHHHhccCcccchh
Confidence 66666666655655333333333333332 24455666665554443 33443 3444333332222221 2223
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHH
Q 002596 603 FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQS 682 (902)
Q Consensus 603 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 682 (902)
+.+..+|.+..... +..|..+...++.+-.++..+|.. ++.. .+-+++...+.|....+|..
T Consensus 476 ~s~slLp~i~el~~--------------d~~wRvr~ail~~ip~la~q~~~~---~~~~-~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 476 VSNSLLPAIVELAE--------------DLLWRVRLAILEYIPQLALQLGVE---FFDE-KLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred hhhhhhhhhhhhcc--------------chhHHHHHHHHHHHHHHHHhhhhH---HhhH-HHHHHHHhhhhhhHHHHHHH
Confidence 33333443322111 113566667777777788777733 3332 35666677777888899999
Q ss_pred HHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCCh
Q 002596 683 AFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSE 762 (902)
Q Consensus 683 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~ 762 (902)
|...+..++...|.. =+...++|.++....++ +.-+|...+.++..++..+|.++ +...+++.+..+..++.
T Consensus 538 aa~~l~~l~~~~G~~--w~~~~~i~k~L~~~~q~----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~v 609 (759)
T KOG0211|consen 538 AARNLPALVETFGSE--WARLEEIPKLLAMDLQD----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPV 609 (759)
T ss_pred HHHHhHHHHHHhCcc--hhHHHhhHHHHHHhcCc----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCc
Confidence 999999999888721 12345666666666555 46789999999999998888764 45666777777777774
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHH
Q 002596 763 ELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGL 818 (902)
Q Consensus 763 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l 818 (902)
..+|-|++..+.++....... -....+.+.+..|..-.+.+.|-.+..++
T Consensus 610 ---anVR~nvak~L~~i~~~L~~~---~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 610 ---ANVRINVAKHLPKILKLLDES---VRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred ---hhhhhhHHHHHHHHHhhcchH---HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 799999999999998865432 24556666666776645544444444433
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.8e-08 Score=110.98 Aligned_cols=513 Identities=15% Similarity=0.130 Sum_probs=291.5
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccC-ChhhhhHHHHHHHHHHhhchhccc
Q 002596 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (902)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~ 167 (902)
+..+.+.+.|+.+++|.+..||.++|..++.++...|+.--.+++..+..+++-. ++...|||+.+|+.++...--
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL--- 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL--- 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc---
Confidence 5567888889999999999999999999999999987444456666666644433 467889999999998874211
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcc-cchhhHHhHHHHHHHHHH-hhCCCCHHH
Q 002596 168 SDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFL-LSNDPSAEV 237 (902)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~--------~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~-~~~~~~~~v 237 (902)
+-..+..++|.+++.+.- ....||.+|+-....+... .|..+.+.+..+...|+. .+-|++...
T Consensus 414 ------lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 414 ------LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred ------chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 023457889998888852 3568999999998888854 455666666666665554 445888899
Q ss_pred HHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhh-cc
Q 002596 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDD-DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN-MI 315 (902)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~-l~ 315 (902)
|++|.-+|.+.+...+.. ||--.++... |. .+.. --.++..++.. ...+..|...++..++.. ++
T Consensus 488 RRAAsAAlqE~VGR~~n~--p~Gi~Lis~~-------dy~sV~~-rsNcy~~l~~~---ia~~~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNF--PHGISLISTI-------DYFSVTN-RSNCYLDLCVS---IAEFSGYREPVFNHLLTKKVC 554 (1133)
T ss_pred hHHHHHHHHHHhccCCCC--CCchhhhhhc-------chhhhhh-hhhHHHHHhHH---HHhhhhHHHHHHHHHHhcccc
Confidence 999999999988765554 3222232211 10 0100 01223333221 122233344444444321 21
Q ss_pred CChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHH
Q 002596 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ 395 (902)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 395 (902)
. |+ -.+|..++.+|..++...++.+....+|.+.
T Consensus 555 H-------Wd---------------------------------------~~irelaa~aL~~Ls~~~pk~~a~~~L~~ll 588 (1133)
T KOG1943|consen 555 H-------WD---------------------------------------VKIRELAAYALHKLSLTEPKYLADYVLPPLL 588 (1133)
T ss_pred c-------cc---------------------------------------HHHHHHHHHHHHHHHHhhHHhhcccchhhhh
Confidence 0 10 1478889999999999988877766777666
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHHhcchhhh--hhh--------HHHHHHHHhhccCCCC--hHHHHHHHHHHHhhHHH
Q 002596 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGL--YPH--------LSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKF 463 (902)
Q Consensus 396 ~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~--------l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~ 463 (902)
....+.+ ...|++...+.|.+..++...- ..+ ++.+++.+...--+.. ...|.+.+..+.+++..
T Consensus 589 d~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s 665 (1133)
T KOG1943|consen 589 DSTLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS 665 (1133)
T ss_pred hhhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc
Confidence 6677777 9999999999999887665211 111 1112232222211222 46677777666666542
Q ss_pred HhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHhcc-chhhHHHH
Q 002596 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKY-QRRNLRIV 540 (902)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~~ 540 (902)
-... ......+..-..+.+.+.+++ .+|..|.++++.++... .+.-... +++...+..+.+. .+..++..
T Consensus 666 ~~~~----~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~--~li~~~ls~~~~~~~~~~r~g~ 738 (1133)
T KOG1943|consen 666 KDRL----FQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEA--PLITRYLSRLTKCSEERIRRGL 738 (1133)
T ss_pred cchh----HHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhh--HHHHHHHHHhcCchHHHHHHHH
Confidence 2111 001112223333344445566 89999999999998864 2221111 4666666666555 34444433
Q ss_pred HHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHH
Q 002596 541 YDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQ 618 (902)
Q Consensus 541 ~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~-~~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~ 618 (902)
.-+++.+.... ..-++-+.+...++..... +.... ....+..+..+...++. .+..-..+++..+++.+.+.
T Consensus 739 ~lal~~lp~~~----i~~~~q~~lc~~~l~~~p~--d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddY 812 (1133)
T KOG1943|consen 739 ILALGVLPSEL----IHRHLQEKLCKLVLELLPS--DAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDY 812 (1133)
T ss_pred HHHHccCcHHh----hchHHHHHHHHHHhccCcc--cccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence 33443332111 0002323333322221111 10111 14566677777777773 45555677777777777654
Q ss_pred HHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc---CCChHHHHHHHHHHHHHHhh
Q 002596 619 QLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM---DDASDVRQSAFALLGDLARV 693 (902)
Q Consensus 619 ~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~vr~~a~~~l~~l~~~ 693 (902)
.. |..++- ..=+|+.|+.++..+...+.+ .++++...+-+.+...++ ++....|+.|..++..+..+
T Consensus 813 tt-----d~rGDV-GswVReaAm~al~~~~~~l~~--p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 813 TT-----DSRGDV-GSWVREAAMKALSSLLDTLSS--PKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cc-----ccCccH-HHHHHHHHHHHHHhhhhhhcC--cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 31 111111 234677788877777665543 222322112222221222 23334466777777666655
No 48
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.39 E-value=2.7e-08 Score=112.18 Aligned_cols=228 Identities=20% Similarity=0.208 Sum_probs=151.3
Q ss_pred HHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcC
Q 002596 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDD--ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLN 714 (902)
Q Consensus 637 ~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~ 714 (902)
+.++.-++..+++.+|+.....+++ +...+...+++. ..+.--+.+.++..++..++..+.| +-+.+|.+..++.
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~--l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPH--LWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcch--HHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 3466677888889999888777765 666666655431 1112334566666666666667777 6677888888888
Q ss_pred CCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHH
Q 002596 715 TPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHF 794 (902)
Q Consensus 715 ~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~ 794 (902)
+. ...+|..|+.++|.++.....+ ....++..+++++...+ ...-|+.+...++.+.......+.||.+.+
T Consensus 827 s~----~~a~r~~~ar~i~~~~k~~~~e---~m~~v~~~~~~ll~~~~--~~~~r~~a~e~~~~l~~~l~~~l~~~~~Ll 897 (1549)
T KOG0392|consen 827 SI----HIAVRYAAARCIGTMFKSATRE---TMATVINGFLPLLGDLD--KFVRRQGADELIELLDAVLMVGLVPYNPLL 897 (1549)
T ss_pred cc----hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhccchh--hHhhhhhHHHHHHHHHHhhcccccccceee
Confidence 77 6799999999999998766543 23334556667776654 234455666667777777666777889999
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhh-hhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhHHH
Q 002596 795 MQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGA-LSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQ 873 (902)
Q Consensus 795 l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~-~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 873 (902)
+++++..++. ..+..|..+.+.+..++..-|-+. .+..+.+-..+.+- .++.+.++.|+++.-|- +.|.
T Consensus 898 v~pllr~msd-~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~----ke~erkFLeqlldpski----~~y~- 967 (1549)
T KOG0392|consen 898 VVPLLRRMSD-QIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLAS----KEEERKFLEQLLDPSKI----PEYK- 967 (1549)
T ss_pred hhhhhccccc-chHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHh----HHHHHHHHHHhcCcccC----Cccc-
Confidence 9999988876 344568899999999998766332 22222222222221 12456666666665443 2455
Q ss_pred HHhcCCHHHHHHHhhcc
Q 002596 874 CMSALEPPVKDKLSKYQ 890 (902)
Q Consensus 874 ~~~~l~~~~~~~l~~y~ 890 (902)
+|.+++..|++||
T Consensus 968 ----Ip~pI~a~LRkYQ 980 (1549)
T KOG0392|consen 968 ----IPVPISAKLRKYQ 980 (1549)
T ss_pred ----cccchhHHHHHHH
Confidence 7888888888876
No 49
>PRK09687 putative lyase; Provisional
Probab=99.38 E-value=1.1e-10 Score=118.11 Aligned_cols=253 Identities=15% Similarity=0.108 Sum_probs=179.3
Q ss_pred HHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002596 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (902)
++.|...+.+++..+|..+...|..+-. +..++.+...++++++.+|..|+.+|+.+-....
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 3556777789999999999999865422 5577888888999999999999999999754211
Q ss_pred hhhHHhHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 002596 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~ 291 (902)
. ....++.|..+ .+|+++.||..++.+|+.+...... .....++.+.....|.+..||..+...+..+..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 0 12334455544 5788999999999999987543321 123455556666778888999988887754422
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002596 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (902)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a 371 (902)
+..++.|+..+.. ++|.+|..|
T Consensus 158 ------------~~ai~~L~~~L~d----------------------------------------------~~~~VR~~A 179 (280)
T PRK09687 158 ------------EAAIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_pred ------------HHHHHHHHHHhcC----------------------------------------------CCHHHHHHH
Confidence 1223333332320 124599999
Q ss_pred HHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHH
Q 002596 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (902)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 451 (902)
..+|+.+ ..+ -+...+.+...+.+.+ |.+|..|+.+||.+.. +..+|.+++.++++. +|.
T Consensus 180 ~~aLg~~--~~~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSN--KYD---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcC--CCC---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 9999877 111 2345666777788888 9999999999998643 246888888898866 677
Q ss_pred HHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 002596 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (902)
Q Consensus 452 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~ 505 (902)
.++.++|.+.. ...++.|...+. +++..|+..|..++..
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88889988764 256777777775 6789999998887753
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=1.5e-10 Score=138.11 Aligned_cols=273 Identities=22% Similarity=0.213 Sum_probs=193.5
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCC
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (902)
+.|+..|.|+++.||..++..++.+.. ++.++.|...+.++++.+|..|+.+|..+.+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------------ 684 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------------ 684 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------------
Confidence 456677888999999998888886531 5678888888999999999999999877754221
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002596 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (902)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 255 (902)
-.+.+...|+++++.||..|+.+|..+-... ...+...+.|+++.+|..++..|..+-. +
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 1245667788889999999999888754211 1124456788999999999999886521 1
Q ss_pred hhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCC
Q 002596 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (902)
Q Consensus 256 ~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~ 335 (902)
+.+...+.|.+.++|..+...+..+.... .. .++.+...+.
T Consensus 745 ---------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~--------~~~~L~~ll~-------------------- 785 (897)
T PRK13800 745 ---------ESVAGAATDENREVRIAVAKGLATLGAGG--AP--------AGDAVRALTG-------------------- 785 (897)
T ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHHhcccc--ch--------hHHHHHHHhc--------------------
Confidence 12345678889999999988887775431 00 0122221111
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHH
Q 002596 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (902)
Q Consensus 336 ~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~ 415 (902)
| + ++.+|..|..+|..+.. . +.+.+.+...+.+++ |.+|.+|+.+
T Consensus 786 ---------------------D-~----d~~VR~aA~~aLg~~g~---~---~~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 786 ---------------------D-P----DPLVRAAALAALAELGC---P---PDDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ---------------------C-C----CHHHHHHHHHHHHhcCC---c---chhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 0 0 14589999999876532 1 122345667788888 9999999999
Q ss_pred HHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHH
Q 002596 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (902)
Q Consensus 416 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v 495 (902)
|+.+.. +..++.+.+.|+|+++.||..|.++|+++.. . ....+.+...+.|.+..|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~----~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG----------D----PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------C----HHHHHHHHHHHhCCCHHH
Confidence 997642 2245778889999999999999999998611 1 134566677888999999
Q ss_pred HHHHHHHHHH
Q 002596 496 QEAACSAFAT 505 (902)
Q Consensus 496 ~~~a~~al~~ 505 (902)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999998863
No 51
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.6e-07 Score=98.40 Aligned_cols=656 Identities=15% Similarity=0.161 Sum_probs=342.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcC--ChHHHHHHHHHHHHHHhhcCc---Cc-------h
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGGI---AG-------W 129 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~a~~l~~i~~~~~~---~~-------w 129 (902)
+.++.+|.-|--.|+ .|..- + .---.+++.+.++ +..+|..++....+-++..|. +. -
T Consensus 16 ~pdps~rk~aEr~L~-----~~e~q-~----~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~ 85 (960)
T KOG1992|consen 16 SPDPSVRKPAERALR-----SLEGQ-Q----NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEED 85 (960)
T ss_pred CCCCccCchHHHHHH-----HhccC-C----CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhH
Confidence 567888888877664 23221 1 1112455666543 788999999888888886431 11 1
Q ss_pred HHHH-HHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002596 130 LELL-QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 130 ~~ll-~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (902)
.+.+ ..+..++-+....+..---.+|+.+.+. +++ ..++.++|.+...++..+-.+-...+.+-.++.
T Consensus 86 ~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-------DFP----~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 86 REQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-------DFP----DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-------ccc----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 1222 3344444444445555455555555532 222 246889999999999877655444444433332
Q ss_pred c-----ccchhhH----HhHH-------HHHHHHHHhh--CCCCHHHHHHHHHHHHHHH--------hhChhhhhhhHHH
Q 002596 209 M-----LMPSALF----VSMD-------QYLQGLFLLS--NDPSAEVRKLVCAAFNLLI--------EVRPSFLEPHLRN 262 (902)
Q Consensus 209 ~-----~~~~~~~----~~~~-------~~l~~l~~~~--~~~~~~vr~~~~~~l~~l~--------~~~~~~~~~~l~~ 262 (902)
+ +-.+++. -.++ .++....... .+.+...-...+..+.-++ ..-|+++..+++.
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~ 234 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKT 234 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHH
Confidence 1 1122221 1112 1222222222 1222222222333222222 3457777777777
Q ss_pred HHHHHHhhhc-------CCC------HHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhcc
Q 002596 263 LFEYMLQVNK-------DTD------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (902)
Q Consensus 263 i~~~~~~~~~-------~~~------~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~ 329 (902)
.++...+.+. +.+ ++++...||.+.-.+.. +.+.+.|++++++...-..+..+..+.. +
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k--YeEef~~fl~~fv~~~W~LL~~~s~~~k-y----- 306 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK--YEEEFQPFLPDFVTATWNLLVSTSPDTK-Y----- 306 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh--hHHHHHhhHHHHHHHHHHHHHhcCCCcc-H-----
Confidence 7666555433 211 23566777776666655 6777888998887665444443221110 0
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc-------Ccchhh--------------
Q 002596 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-------GDEILP-------------- 388 (902)
Q Consensus 330 ~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~-------~~~~~~-------------- 388 (902)
| ..-..|.+.|..+++.- ++.++.
T Consensus 307 ------------------------------D-----~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR 351 (960)
T KOG1992|consen 307 ------------------------------D-----YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILR 351 (960)
T ss_pred ------------------------------H-----HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccc
Confidence 0 01222333333333221 111111
Q ss_pred ---------hhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc-CC--CChHHHHHHHHH
Q 002596 389 ---------TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-DD--KFPLIRSISCWT 456 (902)
Q Consensus 389 ---------~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d--~~~~vr~~a~~~ 456 (902)
..+..+..-+...|. -..|.+|+..++.++......+.+.+...+..++... .+ .++.-+..+...
T Consensus 352 ~eDeElFED~pleYiRRDlEGsDv--dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL 429 (960)
T KOG1992|consen 352 EEDEELFEDNPLEYIRRDLEGSDV--DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYL 429 (960)
T ss_pred hhhHHHhccCHHHHHHHhcccCCc--chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhh
Confidence 123333333333331 3457888888888887765555555555555555433 23 345666777776
Q ss_pred HHhhHHHHhhhh----cCC---cchhh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Q 002596 457 LSRFSKFIVQDI----GHQ---NGREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (902)
Q Consensus 457 l~~~~~~~~~~~----~~~---~~~~~-~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~ 528 (902)
+..++....... .+. ....+ ...++|.|...=....+.++..+..-+-.|=...+ .+++-.+++.+...
T Consensus 430 ~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~ 506 (960)
T KOG1992|consen 430 VTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRF 506 (960)
T ss_pred hHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHh
Confidence 666655422110 000 11222 23344444331112346667666554443333222 34666778888888
Q ss_pred HhccchhhHHHHHHHHHHHHHHhcc---cCCc----hhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccc
Q 002596 529 FGKYQRRNLRIVYDAIGTLADAVGF---ELNQ----PVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFT 601 (902)
Q Consensus 529 l~~~~~~~~~~~~~al~~l~~~~~~---~~~~----~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~ 601 (902)
++....-+-..+..++..+...-++ .+.. +|+...++..++..+...+..+. ..++.|+-.+.........
T Consensus 507 L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~En--eylmKaImRii~i~~~~i~ 584 (960)
T KOG1992|consen 507 LEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAEN--EYLMKAIMRIISILQSAII 584 (960)
T ss_pred ccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCccccc--HHHHHHHHHHHHhCHHhhh
Confidence 8765443433444455444332222 1111 25555666656554443322111 3677777777777777888
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhH----HhhhccchHHHHHHHHhcCCCh
Q 002596 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI----ESLVAQSNLRDMLLQCCMDDAS 677 (902)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~ 677 (902)
|+++.+++.+.+++..... +|. ++.+-...++.++.++...+..- ..+.. .++|.+...++.+-.
T Consensus 585 p~~~~~l~~Lteiv~~v~K---NPs------~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~--aL~p~fq~Il~eDI~ 653 (960)
T KOG1992|consen 585 PHAPELLRQLTEIVEEVSK---NPS------NPQFNHYLFESIGLLIRKTCKANPSAVSSLEE--ALFPVFQTILSEDIQ 653 (960)
T ss_pred hhhhHHHHHHHHHHHHHhc---CCC------CchhHHHHHHHHHHHHHHHhccCchHHHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999998887765431 111 34444455677777777766543 22333 478888888877677
Q ss_pred HHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhh--hHHHHHHHHHH
Q 002596 678 DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEIS--PIVMTVVLCLV 755 (902)
Q Consensus 678 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~--~~~~~il~~l~ 755 (902)
+..-.++.+++-++..+...+.+.+..++|.+. +++.|+...--.+....+-.+...+...+. ..++.++..+.
T Consensus 654 EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL----sp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifq 729 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL----SPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQ 729 (960)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc----CHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHH
Confidence 777889999999999887644433344444332 222221001111222233334444444443 34555665555
Q ss_pred HhhcCChhhhhhHHHHHHHHHHHHhhh-cCCccCcChHHHHHHHHHhccCCCCc
Q 002596 756 PILKHSEELNKSLIENSAITLGRLAWV-CPELVSPHMEHFMQPWCIALSMIRDD 808 (902)
Q Consensus 756 ~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~~l~~~~~~l~~~~d~ 808 (902)
+++..... -......+.+++.. .+..+.||+.++....+.++...+..
T Consensus 730 kLiaSka~-----Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 730 KLIASKAN-----DHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HHhcCccc-----chhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence 55554321 12344555666665 44556789999999999999886543
No 52
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=2e-10 Score=137.12 Aligned_cols=273 Identities=17% Similarity=0.122 Sum_probs=196.8
Q ss_pred HHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002596 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (902)
++.|.+.+.++++.+|..|+..|+.+.. +..++.|.+.+.|+++.||..|+.+|..+.+..+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 4677888899999999999999976532 4567888899999999999999999988865433
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
. .+.+...+.++++.+|..++..|..+....+ ..++..+.+.+..+|..|+..+..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 2 1234445667888999999998887642111 1234567889999999988887654211
Q ss_pred CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 002596 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (902)
Q Consensus 293 ~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~ 372 (902)
+.++.. +. | +++.+|..++
T Consensus 745 -----------~~l~~~----l~-----------------------------------------D-----~~~~VR~~aa 763 (897)
T PRK13800 745 -----------ESVAGA----AT-----------------------------------------D-----ENREVRIAVA 763 (897)
T ss_pred -----------HHHHHH----hc-----------------------------------------C-----CCHHHHHHHH
Confidence 111111 11 0 1235999999
Q ss_pred HHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHH
Q 002596 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (902)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 452 (902)
..|..+...-+ ..++.+..++.+++ +.+|.+|+.+|+.+... +.+.+.+...+.|+++.||.+
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHH
Confidence 99977654322 12456678888888 99999999999987532 113355778899999999999
Q ss_pred HHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhcc
Q 002596 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 453 a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~ 532 (902)
|+++|+.+.. ...++.|...+.|++..||..|..+|+.+- --+...+.|..++++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---------~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRWP---------GDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhCC
Confidence 9999987642 234578888899999999999999999751 1124566677888888
Q ss_pred chhhHHHHHHHHH
Q 002596 533 QRRNLRIVYDAIG 545 (902)
Q Consensus 533 ~~~~~~~~~~al~ 545 (902)
+..++..+..+|.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 8888888877765
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=5.7e-09 Score=112.02 Aligned_cols=425 Identities=13% Similarity=0.117 Sum_probs=268.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHH
Q 002596 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (902)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i 94 (902)
|-++..+..+.+.+ ++|-+.-+|-+|.. +|+.. ..+...-...++.++.+|-.|.-.|- .| +-..+.+-.
T Consensus 73 Fp~VVKNVaskn~E-VKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlS-sI--Rvp~IaPI~---- 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIE-VKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLS-SI--RVPMIAPIM---- 144 (968)
T ss_pred HHHHHHHhhccCHH-HHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHH-hc--chhhHHHHH----
Confidence 44556666677777 88888888888754 77742 22222222234677888887765542 11 111122222
Q ss_pred HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCC
Q 002596 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (902)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (902)
.-++-++..|+.+.||+.+|.+|-++.+.++ +.-+++...+..++.+.++.+.-.|+.++..+|-+--+
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld---------- 213 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD---------- 213 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH----------
Confidence 2223345678999999999999999988774 44459999999999999999999999999777764332
Q ss_pred CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-cchh----------------------------hHHhHHHHHHH
Q 002596 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA----------------------------LFVSMDQYLQG 225 (902)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~~----------------------------~~~~~~~~l~~ 225 (902)
.+..-+.++.+++.+-+..=+...++.|..++.. +++. ..+.+..+++.
T Consensus 214 --LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~s 291 (968)
T KOG1060|consen 214 --LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQS 291 (968)
T ss_pred --HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHh
Confidence 2345567788888877666667777777777643 1110 11223445666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhh
Q 002596 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (902)
Q Consensus 226 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~ 305 (902)
.-.++.+.++.|..++++++..++... ....|++.+++.+.+. .+++...+..+..++.. .+..+.||++.
T Consensus 292 tkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~--~~~lF~P~lKs 362 (968)
T KOG1060|consen 292 TKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISIK--RPTLFEPHLKS 362 (968)
T ss_pred ccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhc--chhhhhhhhhc
Confidence 666677778888888888888776432 2334555555555443 33566666777776665 56777887766
Q ss_pred hHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc
Q 002596 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (902)
Q Consensus 306 l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (902)
++ .+.. | .-.....-|..++......
T Consensus 363 Ff------------------------------------v~ss---------D---------p~~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 363 FF------------------------------------VRSS---------D---------PTQVKILKLEILSNLANES 388 (968)
T ss_pred eE------------------------------------eecC---------C---------HHHHHHHHHHHHHHHhhhc
Confidence 31 1110 0 1122344455555555566
Q ss_pred hhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHh
Q 002596 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
-+..+++-++.++.+.+ ...--+++.++|..+... ...-+..+..++..+.+.+..|-..+...+.++...
T Consensus 389 ni~~ILrE~q~YI~s~d---~~faa~aV~AiGrCA~~~----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~-- 459 (968)
T KOG1060|consen 389 NISEILRELQTYIKSSD---RSFAAAAVKAIGRCASRI----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK-- 459 (968)
T ss_pred cHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHhh----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh--
Confidence 67788899999999888 555555566666655433 334455677778888777888888888888777653
Q ss_pred hhhcCCcchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHH
Q 002596 466 QDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (902)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al 544 (902)
.+..+.+++..+.+.+.. .-+.-|....|.++..++. +....|+++..+.+-+.+....++..++...
T Consensus 460 -------~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 460 -------DPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred -------ChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 233344566666665532 1355577777888877764 2224467777777777776666666555443
Q ss_pred H
Q 002596 545 G 545 (902)
Q Consensus 545 ~ 545 (902)
.
T Consensus 529 a 529 (968)
T KOG1060|consen 529 A 529 (968)
T ss_pred h
Confidence 3
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=7.3e-09 Score=115.01 Aligned_cols=397 Identities=17% Similarity=0.144 Sum_probs=258.1
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCc
Q 002596 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (902)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (902)
++..|.+.+...-..++.++..+.....+ ..-++..+.|...+.++++.+|..++..++.+.+........ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~------ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-L------ 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-h------
Confidence 66777766666667778888888876533 447889999999999999999999999998887754332110 0
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhh
Q 002596 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (902)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 255 (902)
.-..+++.++.++.+++..|...|+++|..+.... ..+...++ ..+..+..+...++..+|..+++++..++...++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 11678999999999999999999999999998753 22222221 22556666666667789999999999999888777
Q ss_pred hhhhHH-HHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCC
Q 002596 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (902)
Q Consensus 256 ~~~~l~-~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (902)
+..... .+++.++..+.+.|.=++..+++.+..+++.+...+.+.. ..+++.+...+...++|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 644332 4888888888887777899999999999986433333221 235555555444322211
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHH-HHHHHHHHHHhhcCcc---hhhhhHHHHHHhhccCCCCchHHHH
Q 002596 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK-CSAAALDVLSNVFGDE---ILPTLMPVIQAKLSASGDEAWKDRE 410 (902)
Q Consensus 335 ~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~-~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (902)
... .+.. .....++.++..-+.. ..|.++..+..++.+.+ ...+.
T Consensus 260 --------------------------~~~--~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 --------------------------RLS--SLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred --------------------------ccc--chhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 000 1111 1235666666653333 34777777778888888 99999
Q ss_pred HHHHHHHHHHhcchh--hh----hhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHH---
Q 002596 411 AAVLALGAIAEGCIK--GL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL--- 481 (902)
Q Consensus 411 ~a~~~l~~l~~~~~~--~~----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il--- 481 (902)
+|+.++|.++..... .+ .+.+..++..+..........+|.+++.+++.+....... .+..........+
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 999999999864421 12 2345566777777777888899999999999986432210 0000000111111
Q ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c-ccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 002596 482 ------MGLLKRILDTNKRVQEAACSAFATLEEEA-A-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (902)
Q Consensus 482 ------~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~-~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (902)
..++..++.|-+.+|.++...+..++..- + ..+ -..+.+++.+++--...+...++.=++.+..++++
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i-~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI-CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH-HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 14455566677899999999999888653 1 111 11234444444333323333344445666666654
No 55
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=4.5e-10 Score=113.66 Aligned_cols=253 Identities=17% Similarity=0.126 Sum_probs=176.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhH
Q 002596 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (902)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 260 (902)
-.+.|...|.+++..||..|+.+|..+-. +..++.+..++.++++.+|..+..+|..+...... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 35667888899999999999999987642 22344555667788999999999999997542211 2
Q ss_pred HHHHHHHHhh-hcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCC
Q 002596 261 RNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (902)
Q Consensus 261 ~~i~~~~~~~-~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i 339 (902)
...++.+... ..+.++.||..|+..++.++.....+ .+.++..+...+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~------------------------ 138 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAF------------------------ 138 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhh------------------------
Confidence 2344444444 57889999999999998875431111 1222222211111
Q ss_pred CcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHH
Q 002596 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (902)
Q Consensus 340 ~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l 419 (902)
| .+|.+|..++.+|+.+ ++ +..++.+...+++++ |.+|..|+.+||.+
T Consensus 139 -----------------D-----~~~~VR~~a~~aLg~~----~~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~ 186 (280)
T PRK09687 139 -----------------D-----KSTNVRFAVAFALSVI----ND---EAAIPLLINLLKDPN---GDVRNWAAFALNSN 186 (280)
T ss_pred -----------------C-----CCHHHHHHHHHHHhcc----CC---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcC
Confidence 0 1367999999999543 22 345677777888888 99999999999988
Q ss_pred HhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHH
Q 002596 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAA 499 (902)
Q Consensus 420 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a 499 (902)
..+ -+.+++.+++.++|+++.||..|.++||++.. ..+++.|++.+.+++ ++..+
T Consensus 187 ~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 187 KYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred CCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHH
Confidence 322 23467788888999999999999999998643 267888888898865 66778
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHh-ccchhhHHHHHHHHH
Q 002596 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (902)
Q Consensus 500 ~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~-~~~~~~~~~~~~al~ 545 (902)
+.+++.+-. +..++.|..+++ ..+..++..+.+++.
T Consensus 242 ~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 242 IEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888886643 256666667775 455666666666654
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.3e-08 Score=104.27 Aligned_cols=475 Identities=17% Similarity=0.150 Sum_probs=303.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHH
Q 002596 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (902)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 262 (902)
..|.++|.+.....+..|++-+..++....+ +..+.+.+.......+.++++.+.--|...++..|+.-.-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 4577788888777788888777666644222 3444556666666788999999999999999988875221
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcc
Q 002596 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (902)
Q Consensus 263 i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~ 342 (902)
-+...-+.+.|++.-+|..|+..+..+- ++.+.|.++........|
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR------------vp~IaPI~llAIk~~~~D---------------------- 154 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR------------VPMIAPIMLLAIKKAVTD---------------------- 154 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc------------hhhHHHHHHHHHHHHhcC----------------------
Confidence 1344556788999999999999887661 233444443322211111
Q ss_pred cccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc
Q 002596 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (902)
Q Consensus 343 ~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 422 (902)
..-.+|++|+.++-.+-..-+++ -+.+...+..++.+.. +.+--+|++++..++..
T Consensus 155 --------------------~s~yVRk~AA~AIpKLYsLd~e~-k~qL~e~I~~LLaD~s---plVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 155 --------------------PSPYVRKTAAHAIPKLYSLDPEQ-KDQLEEVIKKLLADRS---PLVVGSAVMAFEEVCPE 210 (968)
T ss_pred --------------------CcHHHHHHHHHhhHHHhcCChhh-HHHHHHHHHHHhcCCC---CcchhHHHHHHHHhchh
Confidence 01148999999998876655443 3478888999999988 88888888888776543
Q ss_pred chhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhh------------------------cCCcchhhHH
Q 002596 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI------------------------GHQNGREQFE 478 (902)
Q Consensus 423 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------------------------~~~~~~~~~~ 478 (902)
--+-+.++ ...+...+.|-+..-+...+.+|.+++++--... .|.....-+.
T Consensus 211 rldLIHkn----yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~ 286 (968)
T KOG1060|consen 211 RLDLIHKN----YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLK 286 (968)
T ss_pred HHHHhhHH----HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHH
Confidence 33333344 3445556666666667777888888877532110 0001223355
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCch
Q 002596 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (902)
Q Consensus 479 ~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~ 558 (902)
-++...-..+...++.|..++|.++..++... -...|...|+.+|.. ...++..++..|..++...+.-|.
T Consensus 287 lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~-- 357 (968)
T KOG1060|consen 287 LLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFE-- 357 (968)
T ss_pred HHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhh--
Confidence 56666667777889999999998887665422 344577777777754 446677778888888876665555
Q ss_pred hhhhhhhHHHHHHHhcCCCCCcch--hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhH
Q 002596 559 VYLDILMPPLIAKWQQLPNSDKDL--FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEF 636 (902)
Q Consensus 559 ~~~~~ll~~l~~~l~~~~~~~~~~--~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~ 636 (902)
||+..+.= - ..|+.. .--++.++.++.... ...|++-+...+.+ .|+++
T Consensus 358 P~lKsFfv-------~--ssDp~~vk~lKleiLs~La~esn------i~~ILrE~q~YI~s--------------~d~~f 408 (968)
T KOG1060|consen 358 PHLKSFFV-------R--SSDPTQVKILKLEILSNLANESN------ISEILRELQTYIKS--------------SDRSF 408 (968)
T ss_pred hhhhceEe-------e--cCCHHHHHHHHHHHHHHHhhhcc------HHHHHHHHHHHHhc--------------CchhH
Confidence 55544320 1 134433 223566776665332 22333333222221 15567
Q ss_pred HHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCC
Q 002596 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTP 716 (902)
Q Consensus 637 ~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 716 (902)
...+..++|..+...+.--.. .+.-|...+++.+..|...++..|..+...-+..-..++. .+.+.++.-
T Consensus 409 aa~aV~AiGrCA~~~~sv~~t------CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~----~La~lldti 478 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGSVTDT------CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILF----QLARLLDTI 478 (968)
T ss_pred HHHHHHHHHHHHHhhCchhhH------HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHH----HHHHHhhhh
Confidence 777888888888877753322 3444455566678888888899899999877654333333 333333322
Q ss_pred CCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCc
Q 002596 717 KLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPEL 786 (902)
Q Consensus 717 ~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 786 (902)
. -+..|...+|.+|+.+...+ ..++.++..+.+-+.+.. ..++-.+....+++.....+.
T Consensus 479 ~---vp~ARA~IiWLige~~e~vp----ri~PDVLR~laksFs~E~---~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 479 L---VPAARAGIIWLIGEYCEIVP----RIAPDVLRKLAKSFSDEG---DEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred h---hhhhhceeeeeehhhhhhcc----hhchHHHHHHHHhhcccc---chhhHHHHHhhhhheEechhh
Confidence 1 24678888899999987643 457788888888887764 566666777778887776654
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=1.3e-08 Score=112.90 Aligned_cols=387 Identities=18% Similarity=0.168 Sum_probs=232.6
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcc
Q 002596 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (902)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (902)
+...+++.+ ...-..++.+|..+..... .....++..+.+..+|.++++.||..+++.++++..+-.... .
T Consensus 43 lf~~L~~~~---~e~v~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~----~ 113 (503)
T PF10508_consen 43 LFDCLNTSN---REQVELICDILKRLLSALS--PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA----Q 113 (503)
T ss_pred HHHHHhhcC---hHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH----H
Confidence 555566555 5666777777877776432 223377888999999999999999999999999876432210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHH-----HHHHHHHHhccchhhHHHHHHHHHHHH
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i-----~~~l~~~l~~~~~~~~~~~~~al~~l~ 548 (902)
.-.-..+++.++.++.|++..|...|..+|..++..- +.+..+ +..|.+.+...+..++..+++++..++
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA 188 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1112468899999999999999999999999998642 222223 677777777655556667777777766
Q ss_pred HHhcccCCchhhhhh--hhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhccc
Q 002596 549 DAVGFELNQPVYLDI--LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSV 626 (902)
Q Consensus 549 ~~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~ 626 (902)
....+.+ .++.. +++.++..+.+ +
T Consensus 189 ~~S~~~~---~~~~~sgll~~ll~eL~~---d------------------------------------------------ 214 (503)
T PF10508_consen 189 SHSPEAA---EAVVNSGLLDLLLKELDS---D------------------------------------------------ 214 (503)
T ss_pred hcCHHHH---HHHHhccHHHHHHHHhcC---c------------------------------------------------
Confidence 5433221 12221 33333332222 2
Q ss_pred ccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC----C-ChHHH-HHHHHHHHHHHhhchHhhHH
Q 002596 627 AAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD----D-ASDVR-QSAFALLGDLARVCPVHLQA 700 (902)
Q Consensus 627 ~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~----~-~~~vr-~~a~~~l~~l~~~~~~~~~~ 700 (902)
|.-+...++++++.++. .+....|+.+..+++.|...+.+ + ...+. -..+.+.|.++...+..+..
T Consensus 215 ------DiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~ 286 (503)
T PF10508_consen 215 ------DILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE 286 (503)
T ss_pred ------cHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH
Confidence 22222333444444443 12222222222344444443322 2 11111 23346677777776667777
Q ss_pred hHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhh-h-----hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHH
Q 002596 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ-E-----ISPIVMTVVLCLVPILKHSEELNKSLIENSAI 774 (902)
Q Consensus 701 ~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~-~-----~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~ 774 (902)
..+.++..+...+++. +...+..|..++|.++..... . ..+-+..++........+.. ..++-.+..
T Consensus 287 ~~p~~~~~l~~~~~s~----d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~---~~lk~r~l~ 359 (503)
T PF10508_consen 287 LYPAFLERLFSMLESQ----DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS---TELKLRALH 359 (503)
T ss_pred HHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 7788888888887777 678899999999999854421 1 23445566666666665553 578889999
Q ss_pred HHHHHhhhcCCccCcChHHHHHHHHHhccCCCCc-----------HH-HHHHHHHHHHHHHcCchh--hhhhHHHHhhHh
Q 002596 775 TLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDD-----------TE-KEDAFRGLCAMVKANPSG--ALSSLVFMCRAI 840 (902)
Q Consensus 775 ~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~-----------~e-~~~~~~~l~~li~~~p~~--~~~~l~~i~~~i 840 (902)
+++.+....+..-...+..+...|...+...... .| |..+++.+..+..+ |-+ .+.+-|.|++-+
T Consensus 360 al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 360 ALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEYL 438 (503)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhh
Confidence 9999986555433334556778888776553222 33 44555555555543 322 234555666666
Q ss_pred hcccccCcHHHHHHHHHHHHHHHh
Q 002596 841 ASWHEIRSEELHNEVCQVLHGYKQ 864 (902)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~~~~ 864 (902)
.+-...+..+.++.=.+++..+..
T Consensus 439 ldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 439 LDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh
Confidence 553322344566666666666654
No 58
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.4e-06 Score=97.91 Aligned_cols=237 Identities=15% Similarity=0.193 Sum_probs=162.7
Q ss_pred ChhhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 002596 10 QEQGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (902)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~-~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~ 88 (902)
+..+..+++.++....+| .+.+.|.+|.+.+.+++..|+.|.....|+.. +..+.+|++|.-+|-+.|+.+|+.++.
T Consensus 5 ~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 5 DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCCc
Confidence 555667888888888887 33338999999999999999998888888875 568899999999999999999999999
Q ss_pred hHHHHHHHHHhhhhh--cC-------ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHH
Q 002596 89 SNQQYIKSELLPCLG--AA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (902)
Q Consensus 89 ~~~~~i~~~ll~~l~--~~-------~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~ 159 (902)
+.+..+|+-++.... .+ ...++.+++.++-.|++.++++.||++++.+.+... .+...++.++.++..+.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLs 161 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSK-TSETVCELSMIILLLLS 161 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhh-cCcccchHHHHHHHHHH
Confidence 999999999888653 11 345788999999999999999999999999998887 34467788888888888
Q ss_pred hhchhccccCCCC----CCCcchhhhHHHHHHHhc----CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhC
Q 002596 160 EDIPQVLDSDVPG----LAECPINIFLPRLLQFFQ----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (902)
Q Consensus 160 ~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~l~----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (902)
|+....-...... .+.......+..+.+++. ..+..+-.+++..+..+..++|-...-.... +..++....
T Consensus 162 Edvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~tn~-l~~~l~~~l 240 (1041)
T KOG2020|consen 162 EEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFETNI-LELLLNKFL 240 (1041)
T ss_pred HHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHhhh-HHHHHHhcc
Confidence 8765421111000 000011111222222221 2233377778888888888877332211111 222322221
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 002596 232 DPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 232 ~~~~~vr~~~~~~l~~l~~~ 251 (902)
..+..|..+++||..+...
T Consensus 241 -n~~~~r~~al~CL~ei~s~ 259 (1041)
T KOG2020|consen 241 -NAPELRNNALSCLTELLSR 259 (1041)
T ss_pred -chHHHHHHHHHHHHHHHhc
Confidence 2345666677776666544
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.21 E-value=1.9e-10 Score=110.95 Aligned_cols=352 Identities=15% Similarity=0.159 Sum_probs=215.0
Q ss_pred HHHHHHHhccCChhhhhHHHHHHHHHHhhc-hhccccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcc
Q 002596 133 LQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 133 l~~L~~~l~~~~~~~r~~al~~L~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~ 210 (902)
+|.+.+.+.|+|-.....|..-+.++...- .+.+.. ..-...+|++++++.. .....+..|..+|+++...
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~-------VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQP-------VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchh-------HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccC
Confidence 367777777788776666666665554321 111110 1124578999999954 4555667788888887754
Q ss_pred cchhhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhH-H-HHHHHHHhhhcCCC--HHHHHHHHHH
Q 002596 211 MPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-R-NLFEYMLQVNKDTD--DDVALEACEF 285 (902)
Q Consensus 211 ~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~-~i~~~~~~~~~~~~--~~v~~~al~~ 285 (902)
-...-.-.+ ..-+|.+++++.+++.+||.+++-+|..++...+.. ..|+ . ..++.++..+.+.. -.+...+.-.
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWt 224 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWT 224 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHH
Confidence 322110000 012556677778889999999999999988654432 2221 1 23333444433333 3455566667
Q ss_pred HHHhhccCC---chhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 002596 286 WHSYFEAQL---PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (902)
Q Consensus 286 l~~l~~~~~---~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~ 362 (902)
++.+++.+. .+..+.. .+|.|...+ ++.+ .
T Consensus 225 LSNlcRGknP~P~w~~isq----alpiL~KLi-ys~D-~----------------------------------------- 257 (526)
T COG5064 225 LSNLCRGKNPPPDWSNISQ----ALPILAKLI-YSRD-P----------------------------------------- 257 (526)
T ss_pred HHHhhCCCCCCCchHHHHH----HHHHHHHHH-hhcC-H-----------------------------------------
Confidence 788888732 3344433 344433222 2111 0
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---chh-hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHH
Q 002596 363 NVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAF 437 (902)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~ 437 (902)
.+-.-|..+++.++..-.+ .++ ..+.+.+.+.+.+++ .+..--|+..+|.|..|......-.+. ..++.
T Consensus 258 ---evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 258 ---EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred ---HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 0233466666655544322 111 123456778888877 888888999999998887654332222 24566
Q ss_pred HhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccch
Q 002596 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELA 515 (902)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~ 515 (902)
+.+.|.++...+|.-|||+++.+...-.+. ...-.-..++|.|+..|...+-.++..||||+.+....+ .+.+.
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteq----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQ----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHH----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 666788899999999999999986543221 011122457888999898888899999999999988776 34455
Q ss_pred HhH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 002596 516 PRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 516 p~l--~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~ 549 (902)
.|+ ...+..|..+|.-.+.+..+.+++++..+.+
T Consensus 408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 554 3456667777776666677777788776655
No 60
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.8e-05 Score=87.77 Aligned_cols=423 Identities=16% Similarity=0.180 Sum_probs=226.5
Q ss_pred ccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCC-CCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC
Q 002596 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (902)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (902)
..+|-.|++.++++....|......++.-+..+++-.+ +..|. +|+.+|+.++..-- -+...++.++|.+++.+.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rGl-Llps~l~dVvplI~kaL~ 430 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRGL-LLPSLLEDVVPLILKALH 430 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhh
Confidence 45889999999999999987666666665555444222 12265 99999999986321 224567788999888876
Q ss_pred C--------CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhc---
Q 002596 444 D--------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK-RILDTNKRVQEAACSAFATLEEEAA--- 511 (902)
Q Consensus 444 d--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~-~l~d~~~~v~~~a~~al~~l~~~~~--- 511 (902)
- ....||.+||..+-.|+....+ ....+++..+...++. .+-|++..+|.+|..|+...+.--+
T Consensus 431 Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~----~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p 506 (1133)
T KOG1943|consen 431 YDVRRGQHSVGQHVRDAACYVCWAFARAYSP----SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFP 506 (1133)
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhcCCh----hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCC
Confidence 3 3457999998888877776543 2456677777777764 4459999999999999876653210
Q ss_pred ----------------------------ccchHhHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHHhcccCCchhhhh
Q 002596 512 ----------------------------EELAPRLEIILQHLMMA-FGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (902)
Q Consensus 512 ----------------------------~~~~p~l~~i~~~l~~~-l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~ 562 (902)
..+..|...+++.++.. +...+...+..+..++..+...-.+.+. +
T Consensus 507 ~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a-----~ 581 (1133)
T KOG1943|consen 507 HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA-----D 581 (1133)
T ss_pred CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc-----c
Confidence 11233444555555443 4555667777888888887766544332 2
Q ss_pred hhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHH----HHHHHHhhcccccCCCCchhHH
Q 002596 563 ILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINII----QTQQLAKVDSVAAGAQYDKEFV 637 (902)
Q Consensus 563 ~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l----~~~~~~~~~~~~~~~e~d~~~~ 637 (902)
..+|+++...... +... ....-..+.+..+... ..|....+.+.-++.+ .......-..+. . +++
T Consensus 582 ~~L~~lld~~ls~---~~~~r~g~~la~~ev~~~~~~-l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~-----~-~lm 651 (1133)
T KOG1943|consen 582 YVLPPLLDSTLSK---DASMRHGVFLAAGEVIGALRK-LEPVIKGLDENRIAGLLSIIPPICDRYFYRGQ-----G-TLM 651 (1133)
T ss_pred cchhhhhhhhcCC---ChHHhhhhHHHHHHHHHHhhh-hhhhhhhhHHHHhhhhhhhccHHHHHHhccch-----H-HHH
Confidence 4455555544332 2221 2333333444333322 1121222222222221 111000000000 0 111
Q ss_pred HHHhhhHHHHHHHHhhh----HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHH-HHHHHHHHh
Q 002596 638 VCCLDLLSGLAEGLGSG----IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAKQ 712 (902)
Q Consensus 638 ~~al~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~ 712 (902)
..+....++.+... +..++- .....++..+..+.+ .+|+.++..+++++..+-..= +... .++...+..
T Consensus 652 ---r~~~~~~Ie~~s~s~~~~~~~~v~-e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d-~~~~~~li~~~ls~ 725 (1133)
T KOG1943|consen 652 ---RQATLKFIEQLSLSKDRLFQDFVI-ENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKAD-EGEEAPLITRYLSR 725 (1133)
T ss_pred ---HHHHHHHHHHhhhccchhHHHHHH-HHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcC-chhhhHHHHHHHHH
Confidence 11222222322211 111111 124445555665555 899999999999987653111 1111 354455555
Q ss_pred cCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCC-ccCcC
Q 002596 713 LNTPKLKETVSVANNACWAIGELAVKARQEISPIVMT-VVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE-LVSPH 790 (902)
Q Consensus 713 l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~-il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~ 790 (902)
+.+.. +..+|....-++|.+... .+.-.+.+ +...+..... ++.....|++.+.++.++...... .....
T Consensus 726 ~~~~~---~~~~r~g~~lal~~lp~~---~i~~~~q~~lc~~~l~~~p--~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 726 LTKCS---EERIRRGLILALGVLPSE---LIHRHLQEKLCKLVLELLP--SDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred hcCch---HHHHHHHHHHHHccCcHH---hhchHHHHHHHHHHhccCc--ccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 54432 345666666666655311 11122222 2233322221 111356677788888887765441 11224
Q ss_pred hHHHHHHHHHhccCCCCc-------HHHHHHHHHHHHHHHc
Q 002596 791 MEHFMQPWCIALSMIRDD-------TEKEDAFRGLCAMVKA 824 (902)
Q Consensus 791 l~~~l~~~~~~l~~~~d~-------~e~~~~~~~l~~li~~ 824 (902)
..++...++++|.+...+ -.|+.+.+++..+.-.
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~ 838 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDT 838 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhh
Confidence 677888888887663221 1366777777776543
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.9e-07 Score=101.55 Aligned_cols=417 Identities=16% Similarity=0.163 Sum_probs=237.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChH-HHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccC-CHhHHHHHH
Q 002596 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-SPSNQQYIK 95 (902)
Q Consensus 19 ~~l~~~~s~~~~~~r~~a~~~L~~~~~-~p~~~-~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l-~~~~~~~i~ 95 (902)
.++..+...|-+ ..|-...++..|.+ .|+-. .....++.+-++.++.+|..|.-.+ ..+ -+...+++.
T Consensus 53 dvvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm--------~~l~v~~i~ey~~ 123 (734)
T KOG1061|consen 53 DVVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTM--------GCLRVDKITEYLC 123 (734)
T ss_pred HHHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhce--------eeEeehHHHHHHH
Confidence 344444445655 88888888888765 67743 3444444444577888998886433 112 234456788
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCC
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (902)
+.+..++.+.++.+|++++.+++.+....+. ..-..+++.|..++.+++|.+...|+.+|..|.+.-+.....
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~------ 197 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL------ 197 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc------
Confidence 8899999999999999999999998776533 233467888888888999999999999999998865431100
Q ss_pred CcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChh
Q 002596 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (902)
Q Consensus 175 ~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 254 (902)
.....++..++..+..-...-+...++++.... |+.- .....+++.+...+.+.+..+...+.+.+..+....+.
T Consensus 198 -~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~---p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 198 -ELNPQLINKLLEALNECTEWGQIFILDCLAEYV---PKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred -cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC---CCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 122445555555555444444445555554443 3322 22334566666666666666767777777766655444
Q ss_pred hhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHH------------hhhhhh--HHHHHhhccCChhh
Q 002596 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK------------EFLPRL--VPVLLSNMIYADDD 320 (902)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~------------~~l~~l--~~~ll~~l~~~~~d 320 (902)
.-...+..+-+.++..+.... ++...|+.=+.-+... .++.++ |..-++ +..+. .+.....-
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~--~p~~~~~~~~~Ff~kynDPiYvK~eKleil~-~la~~~nl 348 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK--RPEILKVEIKVFFCKYNDPIYVKLEKLEILI-ELANDANL 348 (734)
T ss_pred HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh--ChHHHHhHhHeeeeecCCchhhHHHHHHHHH-HHhhHhHH
Confidence 322333344444443333333 5555555444333322 111111 110000 00000 00000000
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhcc
Q 002596 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (902)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (902)
.+...+ +. +..- + .+-..-+.+..+++.++..+.+. ..++..+.+.+.-
T Consensus 349 ~qvl~E----------------l~-------eYat-e-----vD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~ 397 (734)
T KOG1061|consen 349 AQVLAE----------------LK-------EYAT-E-----VDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLET 397 (734)
T ss_pred HHHHHH----------------HH-------Hhhh-h-----hCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhh
Confidence 000000 00 0000 0 00113456888888888888654 4455555555553
Q ss_pred CCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC-CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHH
Q 002596 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (902)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 479 (902)
.. -.....++..+..+...++.. .+.+++.+...+.. .+|..|.+-.|.+|++++.+.+ ...
T Consensus 398 ~~---~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~----------a~e 460 (734)
T KOG1061|consen 398 KV---DYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN----------ALE 460 (734)
T ss_pred cc---cceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc----------HHH
Confidence 22 122333455566666555432 24455555555544 5788999999999999987653 357
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 480 il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
++..+++.+.|....||..-..+...+.
T Consensus 461 lL~~f~en~~dE~~~Vql~LLta~ik~F 488 (734)
T KOG1061|consen 461 LLESFLENFKDETAEVQLELLTAAIKLF 488 (734)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 8888889999988888887666655543
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.5e-06 Score=92.90 Aligned_cols=306 Identities=14% Similarity=0.134 Sum_probs=200.3
Q ss_pred HHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccch
Q 002596 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (902)
Q Consensus 134 ~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (902)
..|.+-+++++.-+.-.|+.+|+.++. .+ ..+.+.|.+...+++.++.+|+.|+-|...++...|+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s---~E-----------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~ 175 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS---PE-----------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD 175 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC---HH-----------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch
Confidence 445555566777777788888877765 21 3478999999999999999999999999999988765
Q ss_pred hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhh----cC-----------CCHHH
Q 002596 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----KD-----------TDDDV 278 (902)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~----~~-----------~~~~v 278 (902)
-. +.|++..-+++.+.+..|-...+..+..+++..++.+. |+..+++.++..+ .. .|+-+
T Consensus 176 l~----e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 176 LV----EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred HH----HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 33 33355555566667777878888888888888665543 4444444333322 11 25556
Q ss_pred HHHHHHHHHHhhccC-CchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCC
Q 002596 279 ALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (902)
Q Consensus 279 ~~~al~~l~~l~~~~-~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~d 357 (902)
...++.++.-+.+.. .....+ ..++. +..+.++..
T Consensus 251 Qi~iLrlLriLGq~d~daSd~M----~DiLa---qvatntdss------------------------------------- 286 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADASDLM----NDILA---QVATNTDSS------------------------------------- 286 (866)
T ss_pred HHHHHHHHHHhcCCCccHHHHH----HHHHH---HHHhccccc-------------------------------------
Confidence 677777776665541 111111 11111 112211100
Q ss_pred CccccccccHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHH
Q 002596 358 DDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (902)
Q Consensus 358 d~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~ 436 (902)
.+ .--..-.+|+..+....++ ....-.++++-+++.+.+ -+.|+.|+..|......-+....+|-.
T Consensus 287 ----kN--~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~NirYvaLn~L~r~V~~d~~avqrHr~---- 353 (866)
T KOG1062|consen 287 ----KN--AGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---NNIRYVALNMLLRVVQQDPTAVQRHRS---- 353 (866)
T ss_pred ----cc--chhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---cceeeeehhhHHhhhcCCcHHHHHHHH----
Confidence 00 0012244555555555544 344445667777788887 889999999999888766655555543
Q ss_pred HHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchH
Q 002596 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (902)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p 516 (902)
.++.+|+|+++.+|..|+...-.+.. ...+..++..++..|...+..++..+.+-+..+++...+.-.-
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn-----------~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVN-----------ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh
Confidence 46678999999999999887665543 4566778888888887778899999999999998887666666
Q ss_pred hHHHHHHHHH
Q 002596 517 RLEIILQHLM 526 (902)
Q Consensus 517 ~l~~i~~~l~ 526 (902)
|++.++..+.
T Consensus 423 ~idtml~Vl~ 432 (866)
T KOG1062|consen 423 HIDTMLKVLK 432 (866)
T ss_pred HHHHHHHHHH
Confidence 7776655443
No 63
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.08 E-value=0.00011 Score=86.03 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=89.9
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCC
Q 002596 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (902)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (902)
.++..+.++...+|..+-.+++.|+..++. -.-|++-..+-.-+.+....||++|+..++..+-..++
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e----------- 888 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE----------- 888 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-----------
Confidence 344555667777788887788877776632 34466666777777777777888887777765554332
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002596 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (902)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~ 249 (902)
...++...+.....|++..||+.+++.+..+....|+ .+.+..+...++...+|.+..+.+.+++.|..+.
T Consensus 889 -~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 -LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred -HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 2245566666666777778888888888777665443 2223334445555556665567777777776654
No 64
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.07 E-value=1.9e-09 Score=88.40 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHH
Q 002596 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (902)
Q Consensus 408 ~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 487 (902)
.|++++.+|.+++.+.++.+.++++.+++.++..+.|++++||+.||.++.++++...+. ...++.++++.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999988753 567999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 002596 488 ILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 488 l~d~~~~v~~~a~~al~~l~ 507 (902)
+.|++++||..|. .|.+++
T Consensus 77 ~~D~d~~Vr~~a~-~Ld~ll 95 (97)
T PF12755_consen 77 SADPDENVRSAAE-LLDRLL 95 (97)
T ss_pred HcCCchhHHHHHH-HHHHHh
Confidence 9999999999774 455543
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=8.8e-05 Score=86.63 Aligned_cols=162 Identities=21% Similarity=0.256 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHH
Q 002596 110 RSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (902)
Q Consensus 110 r~~~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 188 (902)
+..+..+.-.++..- ....+...+..+...+..+.+.+|-.|++||+.+++.-+..+. -+.+...+..-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R 863 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGR 863 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHh
Confidence 333333333344332 3466778888888889988899999999999999986555432 15566677888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 002596 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (902)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~ 268 (902)
+.|.+..||.+|+..++.++-..|+...++.+ .+.....|+...||+.+++.+..+++..|++ +.+..++--++
T Consensus 864 ~~DssasVREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakml 937 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKML 937 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHH
Confidence 89999999999999999999887766555544 4555567888999999999999999999887 55666666677
Q ss_pred hhhcCCCHHHHHHHHHHHH
Q 002596 269 QVNKDTDDDVALEACEFWH 287 (902)
Q Consensus 269 ~~~~~~~~~v~~~al~~l~ 287 (902)
.-..|++..+...+++.+.
T Consensus 938 rRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 938 RRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHhccchhHHHHHHHHHHH
Confidence 6677766667666666543
No 66
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.05 E-value=1.4e-07 Score=101.15 Aligned_cols=351 Identities=15% Similarity=0.229 Sum_probs=225.2
Q ss_pred cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCC--Ccch-hhHHH
Q 002596 511 AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNS--DKDL-FPLLE 587 (902)
Q Consensus 511 ~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~--~~~~-~~~l~ 587 (902)
+..+.|+.++++..|+..+.......-+.++.|+-.+....++... ++...+++.+..++....++ ++.. ..++|
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~--p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDIL--PIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTG--GGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 4678899999999999999876554445667777777777888876 88999999888887654332 3444 67899
Q ss_pred HHHHHHHHhcc----ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHh-hhHHhhhccc
Q 002596 588 CFTSIAQALGA----GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLG-SGIESLVAQS 662 (902)
Q Consensus 588 ~l~~i~~~~g~----~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~-~~~~~~~~~~ 662 (902)
+++.+.+...+ ....+-+.++|.+..+|++.. .++...++++++.+.+.-. +.+.+...+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV--------------~EF~PYvfQIla~Lle~~~~~~~p~~y~~- 159 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV--------------QEFIPYVFQILAQLLELRPSSPLPDAYKQ- 159 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT---------------TTTHHHHHHHHHHHHHHSS--S--TTTGG-
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCCcHHHHH-
Confidence 99999887654 244567788888888887532 2567778888888888765 334333332
Q ss_pred hHHHHHH-HHhcCCChHHHHHHHHHHHHHHhhchHhhH--HhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 663 NLRDMLL-QCCMDDASDVRQSAFALLGDLARVCPVHLQ--ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 663 ~l~~~l~-~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
+++.++ ..+.+....+ -....++..+.+..+..+. +.+..++..+-+.+.+.. .-..+..-|..+..+.
T Consensus 160 -L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~------~D~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 160 -LFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA------NDHYGFDLLESIVENL 231 (435)
T ss_dssp -GHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT------CHHHHHHHHHHHHHHS
T ss_pred -HHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC------cchHHHHHHHHHHHHC
Confidence 555443 2222222222 3455567777777666654 567788888888887762 2245677888888888
Q ss_pred hh-hhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhh-cCCc-------cCcC-hHHHH-HHHHHhccCCCCc
Q 002596 740 RQ-EISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPEL-------VSPH-MEHFM-QPWCIALSMIRDD 808 (902)
Q Consensus 740 ~~-~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~-------~~~~-l~~~l-~~~~~~l~~~~d~ 808 (902)
+. .+.||+..++..+...+.++. ....+...+..++.++.+ +|+. +.|. ...++ ..|+..++.....
T Consensus 232 p~~~l~~yl~~I~~lll~RLq~sk--T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~ 309 (435)
T PF03378_consen 232 PPEALEPYLKQIFTLLLTRLQSSK--TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP 309 (435)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc
Confidence 75 589999999999999998775 356666667777666543 3322 2222 12233 4578888888878
Q ss_pred HHHHHHHHHHHHHHHcCchhh---hhhHHHHhhHhhc--------------------------cc--------------c
Q 002596 809 TEKEDAFRGLCAMVKANPSGA---LSSLVFMCRAIAS--------------------------WH--------------E 845 (902)
Q Consensus 809 ~e~~~~~~~l~~li~~~p~~~---~~~l~~i~~~i~~--------------------------~~--------------~ 845 (902)
.||+.+.-|++.++...+... ...++.+++++.. |. +
T Consensus 310 ~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs~L~~a~~~~~D 389 (435)
T PF03378_consen 310 IERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFSKLAFAGKKPRD 389 (435)
T ss_dssp HHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG--GGG------
T ss_pred chhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhHHHHhCCCCCCC
Confidence 899999999999987654211 1223333332210 10 0
Q ss_pred c--CcHHHHHHHHHHHHHHHhhcChhhHHHHHhc-CCHHHHHHHhhc
Q 002596 846 I--RSEELHNEVCQVLHGYKQMLRNGAWDQCMSA-LEPPVKDKLSKY 889 (902)
Q Consensus 846 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~l~~y 889 (902)
+ .-.+.+..+.+.+..+.+..| +.+.+++++ ++++.++.|++|
T Consensus 390 p~~~i~d~~~~~~~~L~~~~~~~~-G~~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 390 PLPEIPDPKQYLAQSLSKLSQAHP-GKIPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp S-TTTTCHHHHHHHHHHHHHHHTT-SSHHHHHGGGS-HHHHHHHHH-
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCC-CchHHHHHhhCCHHHHHHhccC
Confidence 0 001567888888888888887 488888887 999999999887
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.99 E-value=6.5e-08 Score=93.83 Aligned_cols=350 Identities=15% Similarity=0.124 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhh-hccCCHhHHHHHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCc----hHHHHHH
Q 002596 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAG----WLELLQA 135 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~-w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~----w~~ll~~ 135 (902)
+.|-+..+.|..-+|+.+.+. -+.+.+-....+..++++.+. .........+|-++.+|+....... -..-+|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 346677778888888888653 234555556677788888885 4567778889999999987642211 1346788
Q ss_pred HHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhcc-cc
Q 002596 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIML-MP 212 (902)
Q Consensus 136 L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~-~~ 212 (902)
+.+++.+++.++|+.+.-+|+.++.+.....+ .+ .-...+..++.++.+. +..+...+..+|.++... .|
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD-~v------L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRD-YV------LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHH-HH------HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 88999999999999999999999877543211 10 0123455566666554 446777788888888754 34
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHH-HHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 002596 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~al~~l~~l~~ 291 (902)
+.--..+...++.|..++...++++...+|-++.-+.....+.+...++ .+...+++.+.+++..+..-|+.....++.
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 5455667778899999988888999999999998887665554443332 122223333333222222222211111110
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002596 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (902)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a 371 (902)
. +|+. ..--++
T Consensus 315 G----------------------------------------------------------------~D~Q--TqviI~--- 325 (526)
T COG5064 315 G----------------------------------------------------------------SDDQ--TQVIIN--- 325 (526)
T ss_pred c----------------------------------------------------------------Cccc--eehhee---
Confidence 0 0000 000000
Q ss_pred HHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChHHH
Q 002596 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (902)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr 450 (902)
-..++.+...+.++. -..|+.|++.++.|..|..+++...++ .++|.++..+....-.+|
T Consensus 326 ----------------~G~L~a~~~lLs~~k---e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 326 ----------------CGALKAFRSLLSSPK---ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred ----------------cccHHHHHHHhcChh---hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 023445555677777 789999999999999998887765554 488999999999999999
Q ss_pred HHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
.-|||+++....+.... ++...|+ ..++..|...|.-.+.++-+-+..++.++++.
T Consensus 387 KEACWAisNatsgg~~~---PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 387 KEACWAISNATSGGLNR---PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHhhhccccCC---chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 99999999987654321 2223332 23555555555433334444557777777764
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3.7e-06 Score=90.24 Aligned_cols=189 Identities=15% Similarity=0.214 Sum_probs=124.7
Q ss_pred CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhc
Q 002596 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (902)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (902)
++++...-+-+-++..|++..+.+|+.+..++-.++-++ |+....-+|.|.+-+.++||.+.-+|..++..+++.-+..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 355555566777888999999999999988888888776 4445556788899999999999999999998888765543
Q ss_pred cccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccc--------------------------------
Q 002596 166 LDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMP-------------------------------- 212 (902)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~-------------------------------- 212 (902)
+ =.+-|.++.++.+. +.-+-...++.|+.+...-|
T Consensus 216 y------------L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 Y------------LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred c------------ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 2 12334444444332 12222222333333322211
Q ss_pred --------hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHH
Q 002596 213 --------SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (902)
Q Consensus 213 --------~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~ 284 (902)
+. ......-++.|-.++.|++...+--.+-++..++..+|+.+..|-+ .+++++.|.|+.+|..|++
T Consensus 284 ~s~s~g~~d~-~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 284 VSMSSGMSDH-SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALD 358 (877)
T ss_pred ehhccCCCCc-HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHH
Confidence 11 0111122333444455667777777788888888888877665543 4566889999999999999
Q ss_pred HHHHhhcc
Q 002596 285 FWHSYFEA 292 (902)
Q Consensus 285 ~l~~l~~~ 292 (902)
.+..+++.
T Consensus 359 Ll~gmVsk 366 (877)
T KOG1059|consen 359 LLYGMVSK 366 (877)
T ss_pred HHHHHhhh
Confidence 99988765
No 69
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.97 E-value=2.9e-09 Score=85.34 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.3
Q ss_pred HHHHHHHhhcC-CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhc--------cCCHhHHHHHHHHHhhhhh
Q 002596 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (902)
Q Consensus 36 a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~--------~l~~~~~~~i~~~ll~~l~ 103 (902)
||++|+++++. |+|+.+|+.|+.+ .+.+..+|++|+++|||.|.++|. .++++.|..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 9999999999975 377999999999999999999999 8999999999999999874
No 70
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.3e-08 Score=97.85 Aligned_cols=334 Identities=14% Similarity=0.079 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHhhcCcc-hhh---hhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHhhc
Q 002596 367 LRKCSAAALDVLSNVFGDE-ILP---TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPL 441 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~-~~~---~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 441 (902)
+..++...++.++-..+.. ++. .+-+++.+++.+. -..|.-++.|+..++..-..... .+... +..+.+.
T Consensus 101 Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~----vevqcnaVgCitnLaT~d~nk~kiA~sGa-L~pltrL 175 (550)
T KOG4224|consen 101 IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG----VEVQCNAVGCITNLATFDSNKVKIARSGA-LEPLTRL 175 (550)
T ss_pred hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC----cEEEeeehhhhhhhhccccchhhhhhccc-hhhhHhh
Confidence 5677888888887777542 222 2334677777764 34455556666666543211111 11222 2334456
Q ss_pred cCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHH
Q 002596 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLE 519 (902)
Q Consensus 442 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~p~l~ 519 (902)
-+..+.+||+.+.-++..+......- ..-....-+|.++..+...+..||..||.+++++.-.- ...+...-|
T Consensus 176 akskdirvqrnatgaLlnmThs~EnR-----r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENR-----RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhh-----hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 67888899999988888776533210 11122346788899999999999999999999997653 344555556
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhh-----hhHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q 002596 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI-----LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQ 594 (902)
Q Consensus 520 ~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~-----ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~ 594 (902)
.+++.|++++++.+.+++..+--+++.++.-. +|... -+|.++..+++. --+.+..-+-|+..+.-
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-------~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDT-------EYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI 321 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccc-------hhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc
Confidence 79999999999999999998888888876422 33333 346777777543 22444566677777766
Q ss_pred HhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC
Q 002596 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD 674 (902)
Q Consensus 595 ~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 674 (902)
.-+.+..---...+..++.+|.-.. ..+....+.+++-.++.+.......+... .-+|.+...+.|
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~d-------------nEeiqchAvstLrnLAasse~n~~~i~es-gAi~kl~eL~lD 387 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGD-------------NEEIQCHAVSTLRNLAASSEHNVSVIRES-GAIPKLIELLLD 387 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCC-------------chhhhhhHHHHHHHHhhhhhhhhHHHhhc-CchHHHHHHHhc
Confidence 5554321111122333444444210 22455567788888887766665555553 456666677778
Q ss_pred CChHHHHHHHHHHHHHHhhchHhhHHhHH--HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 675 DASDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 675 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
....+++..-+++..++-.- ....++- .++|.++..+.+. +.+||.||+.||+.+....
T Consensus 388 ~pvsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~----s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 388 GPVSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSE----SEEVRGNAAAALINLSSDV 448 (550)
T ss_pred CChhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCcc----chhhcccHHHHHHhhhhhh
Confidence 77888877666666665432 3333332 5778888877777 6799999999999997543
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-07 Score=106.21 Aligned_cols=294 Identities=16% Similarity=0.205 Sum_probs=195.4
Q ss_pred HHHHHHHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002596 132 LLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 132 ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (902)
+++.+..++++- ..+.+..|+..|..+......+ ..++.++|.++.+++|+...||..|+.++..++..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 456677777664 3466778888887777665442 35688999999999999999999999999988743
Q ss_pred ---cchhhHHhHHHH-HHHHHHhhCC-CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhh--hcCCCHHHHHHHH
Q 002596 211 ---MPSALFVSMDQY-LQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV--NKDTDDDVALEAC 283 (902)
Q Consensus 211 ---~~~~~~~~~~~~-l~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~--~~~~~~~v~~~al 283 (902)
.|..-...|+++ +|.|-.++.| ....+|.....+|..++.....++.. ...+-.. ..+.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-----~q~~~~~g~~n~~nse------ 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-----TQELRQAGMLNDPNSE------ 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-----HHHHHhcccccCcccc------
Confidence 333333334433 5777777777 45568888889999988776655321 1111111 1222221
Q ss_pred HHHHHhhcc--CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 002596 284 EFWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (902)
Q Consensus 284 ~~l~~l~~~--~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~ 361 (902)
+..+. ....+.+...+.+.+..| +..
T Consensus 562 ----t~~~~~~~~~~~~L~~~V~~~v~sL---lsd--------------------------------------------- 589 (1431)
T KOG1240|consen 562 ----TAPEQNYNTELQALHHTVEQMVSSL---LSD--------------------------------------------- 589 (1431)
T ss_pred ----cccccccchHHHHHHHHHHHHHHHH---HcC---------------------------------------------
Confidence 00000 001111112222222221 110
Q ss_pred cccccHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhh
Q 002596 362 VNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (902)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~ 440 (902)
+.-.+|++-.+.+..|+..+|. ..=..+++++..+|++.| |..|-+-...+.-++-..+.. ..=+.++|.+.+
T Consensus 590 -~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q 663 (1431)
T KOG1240|consen 590 -SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQ 663 (1431)
T ss_pred -CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHH
Confidence 0014889999999999999986 444677899999999998 999987655544333322221 112337999999
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002596 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (902)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (902)
.|.|+.+.|-..|+.++.-+++.-- ..+.++.+++..+...+-.+|.-||..+|..+.......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~l------l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGL------LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcc------cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988887421 245677788888888888999999999999999888775
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=7.3e-06 Score=88.03 Aligned_cols=262 Identities=15% Similarity=0.168 Sum_probs=164.9
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~ 205 (902)
++--.++-+.++.++++..|-+|..|+.++.+++..+++.+ ..-+|+|..-|.++++.|..+|+..+.
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl------------r~~FprL~EkLeDpDp~V~SAAV~VIC 206 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL------------RPCFPRLVEKLEDPDPSVVSAAVSVIC 206 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH------------hhhHHHHHHhccCCCchHHHHHHHHHH
Confidence 34445677788888888888888888888888888777654 455788888888888888888888888
Q ss_pred HHhcccchhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHH
Q 002596 206 QFIMLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (902)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~ 284 (902)
.+....|..+.+.-+. ++.++. +.+..+-...++.|..+....|..-...++.+.+.+ . +..|..
T Consensus 207 ELArKnPknyL~LAP~----ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li----~------sT~AmS 272 (877)
T KOG1059|consen 207 ELARKNPQNYLQLAPL----FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM----E------STVAMS 272 (877)
T ss_pred HHHhhCCcccccccHH----HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHH----H------hhHHHH
Confidence 8888877766554443 344332 344456667777777777665554333333333322 1 122333
Q ss_pred HHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccc
Q 002596 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (902)
Q Consensus 285 ~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~ 364 (902)
.+..++..-... .|. .+..|. +
T Consensus 273 LlYECvNTVVa~----------------s~s------------------------------------~g~~d~--~---- 294 (877)
T KOG1059|consen 273 LLYECVNTVVAV----------------SMS------------------------------------SGMSDH--S---- 294 (877)
T ss_pred HHHHHHHHheee----------------hhc------------------------------------cCCCCc--H----
Confidence 333333220000 000 000000 0
Q ss_pred ccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC
Q 002596 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (902)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (902)
. .+.-.++-+..++.++| .+.|+-++.+++.++...++.+..| -..++++|.|
T Consensus 295 ----a----------------siqLCvqKLr~fiedsD---qNLKYlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~D 347 (877)
T KOG1059|consen 295 ----A----------------SIQLCVQKLRIFIEDSD---QNLKYLGLLAMSKILKTHPKAVQAH----KDLILRCLDD 347 (877)
T ss_pred ----H----------------HHHHHHHHHhhhhhcCC---ccHHHHHHHHHHHHhhhCHHHHHHh----HHHHHHHhcc
Confidence 1 11223344556677888 9999999999999998776655544 3457889999
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHH
Q 002596 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEE 509 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~-~v~~~a~~al~~l~~~ 509 (902)
.++.+|-.|+..+--+. ....+.+++..|+..+...+. ..|..-..-+-.+|..
T Consensus 348 kD~SIRlrALdLl~gmV-----------skkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 348 KDESIRLRALDLLYGMV-----------SKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred CCchhHHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 99999999998876554 345677888888877765443 5555554444444443
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.8e-05 Score=81.29 Aligned_cols=498 Identities=14% Similarity=0.095 Sum_probs=255.2
Q ss_pred hHHHHHHHHHHHHHHhhc--CcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002596 107 RHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (902)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (902)
..-|+.+..++..++..+ +...-.+++-.+..+.++.|+..|.....++..+..-..+. --....
T Consensus 39 r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-------------lm~tss 105 (898)
T COG5240 39 RSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-------------LMGTSS 105 (898)
T ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh-------------hHHHHH
Confidence 344554444444444433 23445678888888999999888877766665443321111 112334
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHH
Q 002596 185 LLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (902)
Q Consensus 185 l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i 263 (902)
+++-++.+.+ .+|-.|++.|..++... ....+..++. +..-++...++..++-.-..+.-........+....
T Consensus 106 iMkD~~~g~~~~~kp~AiRsL~~Vid~~---tv~~~er~l~---~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~ 179 (898)
T COG5240 106 IMKDLNGGVPDDVKPMAIRSLFSVIDGE---TVYDFERYLN---QAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNET 179 (898)
T ss_pred HHHhhccCCccccccHHHHHHHHhcCcc---hhhhHHHHhh---hhccccchhhhhhHHHHhhhhccccHHHHHHHHHHH
Confidence 5555565544 78888888888776432 2333333332 334456666666665544444433333333333222
Q ss_pred HHHHHhhh----c--------CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCC
Q 002596 264 FEYMLQVN----K--------DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (902)
Q Consensus 264 ~~~~~~~~----~--------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~ 331 (902)
-+..+..- . +..+-....|+.++..+-++.. -..-+++.++......
T Consensus 180 qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk------ma~lklv~hf~~n~sm--------------- 238 (898)
T COG5240 180 QEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK------MAQLKLVEHFRGNASM--------------- 238 (898)
T ss_pred HHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH------HHHHHHHHHhhccccc---------------
Confidence 22222211 1 1123345667777766654411 0111222222111100
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc--CcchhhhhHHHHHHhhccCCCCchHHH
Q 002596 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSASGDEAWKDR 409 (902)
Q Consensus 332 ~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~r 409 (902)
+ -..+....+....... ..+.+..+.|++..++.+.- ..+.
T Consensus 239 --------k--------------------------nq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~---emV~ 281 (898)
T COG5240 239 --------K--------------------------NQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKF---EMVF 281 (898)
T ss_pred --------c--------------------------cchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcc---hhhh
Confidence 0 0011122222222232 23667788899999998755 4445
Q ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc
Q 002596 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (902)
Q Consensus 410 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 489 (902)
..+..++.++++... -.+.+...++.+-..|.++....|.+|+..+.+++...++.+ .-.=+.+-..+.
T Consensus 282 lE~Ar~v~~~~~~nv--~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv---------~vcN~evEsLIs 350 (898)
T COG5240 282 LEAARAVCALSEENV--GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV---------SVCNKEVESLIS 350 (898)
T ss_pred HHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee---------eecChhHHHHhh
Confidence 555667777665431 134667778888888999999999999999999998765421 111122333455
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHH
Q 002596 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLI 569 (902)
Q Consensus 490 d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~ 569 (902)
|.|..+ +..|+.++++...+. .++.++..+...+.+....-+..+.+++.+++-..+.+-. .|++ .|.
T Consensus 351 d~Nr~I---styAITtLLKTGt~e---~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--s~l~----FL~ 418 (898)
T COG5240 351 DENRTI---STYAITTLLKTGTEE---TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--SYLD----FLG 418 (898)
T ss_pred cccccc---hHHHHHHHHHcCchh---hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH--HHHH----HHH
Confidence 666444 555666677655332 2333444444444443334445667888877766554322 3433 344
Q ss_pred HHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHH
Q 002596 570 AKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLA 648 (902)
Q Consensus 570 ~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~ 648 (902)
+.+.+.+ .-+. ..++++++.+.... |+--.+.+..|+...+ |-++-.-+.+.++.
T Consensus 419 ~~L~~eG--g~eFK~~~Vdaisd~~~~~--------p~skEraLe~LC~fIE------------Dcey~~I~vrIL~i-- 474 (898)
T COG5240 419 SSLLQEG--GLEFKKYMVDAISDAMEND--------PDSKERALEVLCTFIE------------DCEYHQITVRILGI-- 474 (898)
T ss_pred HHHHhcc--cchHHHHHHHHHHHHHhhC--------chHHHHHHHHHHHHHh------------hcchhHHHHHHHHH--
Confidence 4443321 1122 34555555554432 2223333333343321 22222222333332
Q ss_pred HHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhH
Q 002596 649 EGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (902)
Q Consensus 649 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a 728 (902)
+|.+...--........++..+--++.-||..|+.++..++-...+.+.| ..+...+.+++.+. +.+||..|
T Consensus 475 --LG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~----DdeVRdrA 546 (898)
T COG5240 475 --LGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQ----DDEVRDRA 546 (898)
T ss_pred --hcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcc----cHHHHHHH
Confidence 23321110000123344444433456778888988888877665544433 24455566777776 56889888
Q ss_pred HHHHHHHH
Q 002596 729 CWAIGELA 736 (902)
Q Consensus 729 ~~alg~l~ 736 (902)
..++-.+-
T Consensus 547 sf~l~~~~ 554 (898)
T COG5240 547 SFLLRNMR 554 (898)
T ss_pred HHHHHhhh
Confidence 88877653
No 74
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2e-05 Score=86.01 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=132.3
Q ss_pred CCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhc
Q 002596 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (902)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (902)
.++|....+-..+-+.++++++.||+.++.+...+.++. |+.-.-+++...+.+.+.+..+..+++..+..+|+..++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 356666666666667888999999999999999999886 4455566777778888888888899999999999876554
Q ss_pred cccCCCCCCCcchhhhHHHHHHHhcC---------------CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHh-
Q 002596 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL- 229 (902)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~- 229 (902)
+. .++.+.+.++..|.+ ++|-.+...++.|.-+....++ ....|..++..+..-
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcc
Confidence 32 224455555555432 3677888888888877665433 233343333333321
Q ss_pred ------------------h-CCCCHHHHHHHHHHHHHHHhhChhhhh----hhHH-------HHH----HHHHhhhcCCC
Q 002596 230 ------------------S-NDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLR-------NLF----EYMLQVNKDTD 275 (902)
Q Consensus 230 ------------------~-~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~l~-------~i~----~~~~~~~~~~~ 275 (902)
. -.++...|..+..+|..+..+....+. +.+. +.+ ..++.|++|.|
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD 363 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD 363 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc
Confidence 1 134567888888888887754432221 0111 111 24677899999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002596 276 DDVALEACEFWHSYFEA 292 (902)
Q Consensus 276 ~~v~~~al~~l~~l~~~ 292 (902)
..++..|+|....+...
T Consensus 364 ~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE 380 (866)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999988765
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.89 E-value=2.9e-06 Score=92.48 Aligned_cols=366 Identities=18% Similarity=0.210 Sum_probs=231.3
Q ss_pred HHHhhccCCCCh---HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Q 002596 436 AFLIPLLDDKFP---LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQEAACSAFATLE 507 (902)
Q Consensus 436 ~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-----~~~~v~~~a~~al~~l~ 507 (902)
|.++..|.|..+ .-....+.+++.++. ....++.+++.++..+.. .+......++.++..+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~----------~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~ 71 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST----------SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLL 71 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC----------ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 566777776555 455666777777665 344556666666665542 24555666777888887
Q ss_pred HHhcc-----cchHhHHH-HHHHHHHHHhccc-------hhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH--HH
Q 002596 508 EEAAE-----ELAPRLEI-ILQHLMMAFGKYQ-------RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA--KW 572 (902)
Q Consensus 508 ~~~~~-----~~~p~l~~-i~~~l~~~l~~~~-------~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~--~l 572 (902)
+.... ...-|.+. +++.+++..-... ..++..+...++.+++..+.+-. ...++.+...+.. ..
T Consensus 72 ~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-~~~~~~~~~lf~~~~~~ 150 (415)
T PF12460_consen 72 EKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-QEILDELYSLFLSPKSF 150 (415)
T ss_pred HhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHcccccc
Confidence 77622 22445554 7777776654321 23344445555555555544322 1233333332220 00
Q ss_pred hcCCCCCc----chhhHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHH
Q 002596 573 QQLPNSDK----DLFPLLECFTSIAQALGAGFT-QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (902)
Q Consensus 573 ~~~~~~~~----~~~~~l~~l~~i~~~~g~~f~-~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l 647 (902)
........ .-...+-.+..+..++.++.. |....++..+++...... +...+..+..+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~-------------~~~~~~~~~~~la~L 217 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSE-------------DEFSRLAALQLLASL 217 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHH
Confidence 00000111 113455556666666766443 566677777766554321 445677788888888
Q ss_pred HHHHhh--hHHhhhccchHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhH
Q 002596 648 AEGLGS--GIESLVAQSNLRDMLLQCC-MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSV 724 (902)
Q Consensus 648 ~~~~~~--~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v 724 (902)
+..+.. .+..++ ..+.... .......+..++.++.-+.+..--.-.|...+++..+...+.++ .+
T Consensus 218 vNK~~~~~~l~~~l------~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~------~~ 285 (415)
T PF12460_consen 218 VNKWPDDDDLDEFL------DSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP------EL 285 (415)
T ss_pred HcCCCChhhHHHHH------HHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh------hh
Confidence 887533 233333 3333323 34556667778887777777655445577777888888888765 67
Q ss_pred hhhHHHHHHHHHHhhh--------hhh-----hhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCcc-CcC
Q 002596 725 ANNACWAIGELAVKAR--------QEI-----SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELV-SPH 790 (902)
Q Consensus 725 ~~~a~~alg~l~~~~~--------~~~-----~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~ 790 (902)
...|+.+++.+....+ ..+ +.++..+++.++..+...+ ...+.+...+++.++...|..+ .++
T Consensus 286 g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~---~~~k~~yL~ALs~ll~~vP~~vl~~~ 362 (415)
T PF12460_consen 286 GQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD---DEIKSNYLTALSHLLKNVPKSVLLPE 362 (415)
T ss_pred HHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC---hhhHHHHHHHHHHHHhhCCHHHHHHH
Confidence 8889999999875522 112 4566777888877777664 4588999999999999988665 477
Q ss_pred hHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhh
Q 002596 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIA 841 (902)
Q Consensus 791 l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~ 841 (902)
++.++|..+..|.. .|.+.+..+.+.+..++...|+.+.+|+..++..+.
T Consensus 363 l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 363 LPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 89999999999976 666788899999999999999998899988887654
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.88 E-value=4.3e-06 Score=91.21 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=149.5
Q ss_pred cHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhh-ccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC
Q 002596 366 NLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 443 (902)
..|..+.+++..+.+.+++ +.+..++..+...+ ...+ ...|..++..+..++.+.--...+....++..++..+.
T Consensus 205 ~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~ 281 (415)
T PF12460_consen 205 FSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSED---SELRPQALEILIWITKALVMRGHPLATELLDKLLELLS 281 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCC---cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhC
Confidence 3789999999999999854 44555555555545 3333 66777888888777776654445666677888888888
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhcC--------CcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-cc
Q 002596 444 DKFPLIRSISCWTLSRFSKFIVQDIGH--------QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-EL 514 (902)
Q Consensus 444 d~~~~vr~~a~~~l~~~~~~~~~~~~~--------~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~-~~ 514 (902)
| +.+...+..+++-+.......... -...+++..++|.+++..++.+...+.....||..++++.+. .+
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHH
Confidence 7 777888888888887664433211 124567899999999999987777899999999999999954 56
Q ss_pred hHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH
Q 002596 515 APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (902)
Q Consensus 515 ~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~ 570 (902)
.++++.++|-+++.|+..+..++..+++++..+....++.+. ++++.++|.++.
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~--~hl~sLI~~LL~ 413 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS--EHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHh
Confidence 899999999999999888888888888888888876655554 678888877654
No 77
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=0.00056 Score=78.49 Aligned_cols=108 Identities=17% Similarity=0.268 Sum_probs=79.3
Q ss_pred hHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHh
Q 002596 663 NLRDMLLQCCMD----DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (902)
Q Consensus 663 ~l~~~l~~~~~~----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~ 738 (902)
.+.|++...+++ .+|+++.+|.-++|.+.-....-+... +|.++..+.... ++.+|.|+..++|.++..
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~----l~llftimeksp---~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH----LPLLFTIMEKSP---SPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhcCC---Cceeeecchheccchhhh
Confidence 477888887754 468999999998998876544434444 444445554222 678999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcC
Q 002596 739 ARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (902)
Q Consensus 739 ~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (902)
.+.-+.||.+.+. ..+.+++ ..+|.+|...+..|+...-
T Consensus 992 fpnlie~~T~~Ly----~rL~D~~---~~vRkta~lvlshLILndm 1030 (1251)
T KOG0414|consen 992 FPNLIEPWTEHLY----RRLRDES---PSVRKTALLVLSHLILNDM 1030 (1251)
T ss_pred cccccchhhHHHH----HHhcCcc---HHHHHHHHHHHHHHHHhhh
Confidence 8877778777666 4455664 7999999999999886543
No 78
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.79 E-value=3.6e-07 Score=91.43 Aligned_cols=203 Identities=17% Similarity=0.170 Sum_probs=132.7
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhc-----hHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhh
Q 002596 671 CCMDDASDVRQSAFALLGDLARVC-----PVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISP 745 (902)
Q Consensus 671 ~~~~~~~~vr~~a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~ 745 (902)
.-.+.+++.|..++.-+..++... ...+.+.+..+++.+...+.+. ...+..+|+.+++.++...+..|.|
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~ 90 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEP 90 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 345778999999999999998877 2455566667778888888876 4578899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcC
Q 002596 746 IVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKAN 825 (902)
Q Consensus 746 ~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~ 825 (902)
|++.+++.|+..+.++. ..+++.+..++..++..++ +.+.++...+......++..-|..+.+.+..++...
T Consensus 91 ~~~~~l~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSK---KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999875 6889999999999998765 123443333443333356777889999999999987
Q ss_pred c---hhhhh--hHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHH
Q 002596 826 P---SGALS--SLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKL 886 (902)
Q Consensus 826 p---~~~~~--~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l 886 (902)
+ ..+.. .++.+...+.....+.++++++..++++..+.+.+|+ .=..+++.++|.+++.|
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~-~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE-RAESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H-HH---------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH-hhccchhcchhcccccC
Confidence 7 33332 3577888887765556778999999999999999995 66778899999988766
No 79
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1e-06 Score=86.63 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=180.3
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchh
Q 002596 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (902)
Q Consensus 397 ~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 475 (902)
+-++.+ -+.|.-+.-+|..+...-. .-...+ ..-+|.+...++..++.||+.++.+++.++-.-..- ....+
T Consensus 175 Lakskd---irvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R---k~Laq 247 (550)
T KOG4224|consen 175 LAKSKD---IRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR---KILAQ 247 (550)
T ss_pred hcccch---hhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH---HHHHh
Confidence 334455 6666666666655543211 101111 124778889999999999999999999987543210 01122
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccC
Q 002596 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (902)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (902)
.-..+++.++..+.|++++|+-.|..||.++.....-...-.-..-+|.++++++++..+......-+|..++-.-+...
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 23468999999999999999999999999987643211111111235667778877655555544556655554433332
Q ss_pred Cchhhhh-hhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcccccccc-HHHHHHHHHHHHHHHHHhhcccccCCCCc
Q 002596 556 NQPVYLD-ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA-QPVFQRCINIIQTQQLAKVDSVAAGAQYD 633 (902)
Q Consensus 556 ~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~e~d 633 (902)
...+ .++.++...+.... ++.....+.+++..++.........+. ..-+|.+...+... .
T Consensus 328 ---lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~--------------p 389 (550)
T KOG4224|consen 328 ---LIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG--------------P 389 (550)
T ss_pred ---ceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--------------C
Confidence 2222 35566666665432 322236777888888775554322221 12344444433321 1
Q ss_pred hhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchH--hhHHhH----HHHHH
Q 002596 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV--HLQARL----SDFLD 707 (902)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~----~~~l~ 707 (902)
-+++...-.+++.++ +......++-...++|+|.....+.+.++|-.|...+++++..... .+.... ..+-.
T Consensus 390 vsvqseisac~a~La--l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 390 VSVQSEISACIAQLA--LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQG 467 (550)
T ss_pred hhHHHHHHHHHHHHH--hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHH
Confidence 122222222232222 1222323222224677777777888999999888889888765431 121111 23444
Q ss_pred HHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhh
Q 002596 708 IAAKQLNTPKLKETVSVANNACWAIGELAVKARQ 741 (902)
Q Consensus 708 ~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~ 741 (902)
.+.+.+.+. ...++..|.|++-+++.....
T Consensus 468 ~L~Rfl~S~----~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 468 RLARFLASH----ELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred HHHHHHhhh----HHHHHHHHHHHHHHHHHhCCc
Confidence 555555555 568899999999999876653
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.74 E-value=3.4e-07 Score=91.65 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=130.7
Q ss_pred ccccHHHHHHHHHHHHHhhc-CcchhhhhHH-------HHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHH
Q 002596 363 NVWNLRKCSAAALDVLSNVF-GDEILPTLMP-------VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (902)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~-------~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i 434 (902)
.+|+.|..|...|..+.... +....+.+++ .+...+.+.. -..-..|+.+++.++......+.++++.+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 46999999999999998877 2223333333 3444444444 66778889999999999999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--
Q 002596 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA-- 511 (902)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-- 511 (902)
+|.+++.+.|++..+|.+|..++..+...+. +...+ ++.+...+.+.++.+|..++..+..+++..+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999887543 22344 6777778889999999999999999998876
Q ss_pred -ccchH--hHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccC
Q 002596 512 -EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (902)
Q Consensus 512 -~~~~p--~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (902)
..+.. .++.+.+.+...+.+.+..++..+-.++..+....|+..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 44543 468899999999999999999999999998888777543
No 81
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=0.00099 Score=73.07 Aligned_cols=345 Identities=10% Similarity=0.057 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc-----CCCCh-HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHH-
Q 002596 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-----DDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEK- 479 (902)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~- 479 (902)
..|-+|-..+..+.+...+-+.|.+-+++....... +|-.. ..+.++..+.|.-+..+.+.. ...+++.+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~---dF~~Wl~~~ 488 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL---DFDKWLQEA 488 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHh
Confidence 456666555555555554444444444443333333 22222 345555566666555554321 13333333
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHH---hccc
Q 002596 480 VLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADA---VGFE 554 (902)
Q Consensus 480 il~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~p~l~~i~~~l~~~l~~~~~-~~~~~~~~al~~l~~~---~~~~ 554 (902)
++|.+- .-.+....+|.+.++.++..++. ++..+. +.+...+.+.+++.+. .++..+.+++..+++- .++.
T Consensus 489 llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k---~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 489 LLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELK---PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred hCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHH---HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 333332 22233456789999999988763 233333 3566777888887744 4555677777777663 3355
Q ss_pred CCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCch
Q 002596 555 LNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK 634 (902)
Q Consensus 555 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~ 634 (902)
|. ||++.+.-.++..++..+.-|. ...++..++.+...+++.+.||+..+++.+-...+... .+.
T Consensus 565 Fl--p~lenlf~~lfkll~~~~e~Dt-k~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~------------~e~ 629 (978)
T KOG1993|consen 565 FL--PYLENLFVLLFKLLKAVEECDT-KTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE------------EEP 629 (978)
T ss_pred hh--hhHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc------------cCc
Confidence 55 7888887778888777653332 24788889999999999999999888876655555322 144
Q ss_pred hHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCCh---HHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHH
Q 002596 635 EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDAS---DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (902)
Q Consensus 635 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 711 (902)
-++...+.++..++.++|....++.+ .++|.+-.+..=..+ -..+.++.+.+....+.+ .+.|-+-.++|.+.-
T Consensus 630 lLr~alL~~L~~lV~alg~qS~~~~~--fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~ 706 (978)
T KOG1993|consen 630 LLRCALLATLRNLVNALGAQSFEFYP--FLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLY 706 (978)
T ss_pred HHHHHHHHHHHHHHHHhccCCccchH--HHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHH
Confidence 56667788899999999987666554 477777666532222 234667777777666553 233333334444444
Q ss_pred hcCCCCCccchhHhhhHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcC
Q 002596 712 QLNTPKLKETVSVANNACWAIGELA-VKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCP 784 (902)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 784 (902)
.+..+ .+.-..+..-+...+ ...+.-...|...+.+.+...+.+-. ..-....+..+.-+++.+|
T Consensus 707 ~iE~s-----te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr---~egl~avLkiveili~t~~ 772 (978)
T KOG1993|consen 707 IIEQS-----TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVR---NEGLQAVLKIVEILIKTNP 772 (978)
T ss_pred HHHhh-----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhhH
Confidence 33322 111122222222222 12223345677788888877776432 2223344555555555554
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.2e-05 Score=84.68 Aligned_cols=453 Identities=13% Similarity=0.132 Sum_probs=258.6
Q ss_pred CCCCHHHHHHHHHHHHHh-hcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhc
Q 002596 26 SPSSTADKSQIWQQLQQY-SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA 104 (902)
Q Consensus 26 s~~~~~~r~~a~~~L~~~-~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~ 104 (902)
|.-++ .|+.|-+..-.. .--.+.......++......+.+.+.+.-+.+.|+-.. .++......+.++.-..+
T Consensus 24 s~~~~-kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-----~P~~a~~avnt~~kD~~d 97 (734)
T KOG1061|consen 24 SQSKE-KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-----KPDLAILAVNTFLKDCED 97 (734)
T ss_pred hhhhh-hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-----CchHHHhhhhhhhccCCC
Confidence 33335 777777776553 33445555455555544466788888888888765432 233333344566666778
Q ss_pred CChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHH
Q 002596 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (902)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (902)
+++.+|..+....+.+ .-++.|..+..-+..++.+.++.+|..+..+..++...-++.... ..+++.
T Consensus 98 ~np~iR~lAlrtm~~l---~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~----------~gl~~~ 164 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCL---RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED----------SGLVDA 164 (734)
T ss_pred CCHHHHHHHhhceeeE---eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc----------cchhHH
Confidence 9999999865554433 234677888899999999999999999998888876654443221 567888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHH
Q 002596 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (902)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i 263 (902)
+...+.|.++.|...|+.++..+.+..++ ........++..++..++.-++.-+. .++..+++..|+.- .-...+
T Consensus 165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~-~ea~~i 240 (734)
T KOG1061|consen 165 LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDS-REAEDI 240 (734)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCc-hhHHHH
Confidence 88888999999999999999999877653 22222233444555544333333333 34444444444432 234456
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhh--h-------hhccCCCCC
Q 002596 264 FEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV--E-------AEEDESLPD 334 (902)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~--~-------~~~~~~~~~ 334 (902)
++.+...+.+....+...+..++....+. .......++.++-+.++..+.... +..-. . ..|. .
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~----~ 313 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE----I 313 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH----H
Confidence 66666666666666777777776666554 122222333344444333333222 21100 0 0000 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHH
Q 002596 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVL 414 (902)
Q Consensus 335 ~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~ 414 (902)
-..+++-+|.+.. |. ..+...-.+++.. ...+..++.++.-+.++-..-+ ...-..++.
T Consensus 314 ~~~~~~~Ff~kyn------------DP---iYvK~eKleil~~---la~~~nl~qvl~El~eYatevD---~~fvrkaIr 372 (734)
T KOG1061|consen 314 LKVEIKVFFCKYN------------DP---IYVKLEKLEILIE---LANDANLAQVLAELKEYATEVD---VDFVRKAVR 372 (734)
T ss_pred HHhHhHeeeeecC------------Cc---hhhHHHHHHHHHH---HhhHhHHHHHHHHHHHhhhhhC---HHHHHHHHH
Confidence 0011222222221 00 0122223333333 3334556667777777777767 777777899
Q ss_pred HHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC-CCH
Q 002596 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNK 493 (902)
Q Consensus 415 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~ 493 (902)
++|.++-...+. ..+++.++..+.-....|...++..+..+...++ +.++.+++.+...+.. .++
T Consensus 373 aig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP---------~~~~~vv~~l~~~~~sl~ep 438 (734)
T KOG1061|consen 373 AIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYP---------NKYESVVAILCENLDSLQEP 438 (734)
T ss_pred Hhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCC---------CchhhhhhhhcccccccCCh
Confidence 999888654432 5567777777765444455555555555554443 3335666666555443 357
Q ss_pred HHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHh
Q 002596 494 RVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (902)
Q Consensus 494 ~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~ 551 (902)
..|.+-.|.++...+...+ .+.++..++..+.+....++ ++.+...++..
T Consensus 439 eak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vq---l~LLta~ik~F 488 (734)
T KOG1061|consen 439 EAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQ---LELLTAAIKLF 488 (734)
T ss_pred HHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHH---HHHHHHHHHHH
Confidence 8888888888887775433 23444444444444333333 34444444433
No 83
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.65 E-value=5.9e-06 Score=93.71 Aligned_cols=286 Identities=18% Similarity=0.150 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
...|.+|+..|..++....+ ...++.++|+++..+.|+.+.||..|+.+|.++..-..+. .+....-|-+-++|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~-~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI-PPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC-CcccchhhHhhhhhhhH
Confidence 45688888888888876654 3578899999999999999999999999999887766543 11122334455777777
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH--HhccchhhHHHHHHHHHHHHHHhcccCCchhhhh
Q 002596 486 KRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA--FGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLD 562 (902)
Q Consensus 486 ~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~--l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~ 562 (902)
..+.| ....||.+-+..|+.+++.+.. |+. .-..+-.. ++..+... .++.-.+ .+..
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~r----Fle-~~q~~~~~g~~n~~nset--------------~~~~~~~-~~~~ 573 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYR----FLE-LTQELRQAGMLNDPNSET--------------APEQNYN-TELQ 573 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHH----HHH-HHHHHHhcccccCccccc--------------ccccccc-hHHH
Confidence 77778 6678888888888888875421 111 11111111 22222110 0000000 1222
Q ss_pred hhhHHHHHHHhcC-CCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHH
Q 002596 563 ILMPPLIAKWQQL-PNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCC 640 (902)
Q Consensus 563 ~ll~~l~~~l~~~-~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~a 640 (902)
.+...+-+...+. .++++.+ ..+++.+..++..+|+.=. =+.+++.++..|+. . ||.+|...
T Consensus 574 ~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks--ND~iLshLiTfLND-------------k-Dw~LR~aF 637 (1431)
T KOG1240|consen 574 ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS--NDVILSHLITFLND-------------K-DWRLRGAF 637 (1431)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHhcC-------------c-cHHHHHHH
Confidence 2222221111111 1233344 5678888888888887322 13466667767762 1 88888888
Q ss_pred hhhHHHHHHHHhhh-HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCc
Q 002596 641 LDLLSGLAEGLGSG-IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK 719 (902)
Q Consensus 641 l~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 719 (902)
++.+.+++-.+|.. .++| ++|+|...+.|..+-|..+|++++.-+++..- -=.+++-+++....-.|-.+
T Consensus 638 fdsI~gvsi~VG~rs~sey-----llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~i~~~v~PlL~hP--- 708 (1431)
T KOG1240|consen 638 FDSIVGVSIFVGWRSVSEY-----LLPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKDILQDVLPLLCHP--- 708 (1431)
T ss_pred HhhccceEEEEeeeeHHHH-----HHHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHhhhhheeCc---
Confidence 88887777777765 4444 89999999999999999999999998888642 12366667777777777777
Q ss_pred cchhHhhhHHHHHHHHHHhhh
Q 002596 720 ETVSVANNACWAIGELAVKAR 740 (902)
Q Consensus 720 ~~~~v~~~a~~alg~l~~~~~ 740 (902)
|.-+|..++..+..++...+
T Consensus 709 -N~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 709 -NLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred -hHHHHHHHHHHHHHHHhhhh
Confidence 67899999888888776654
No 84
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00057 Score=74.94 Aligned_cols=473 Identities=15% Similarity=0.120 Sum_probs=239.0
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~ 205 (902)
...-.+++-.+.++.++.|+..|.....++..+..-..+ + --....+....+...+..|..|+++|.
T Consensus 59 ~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-----v--------iivtsslmkD~t~~~d~yr~~AiR~L~ 125 (865)
T KOG1078|consen 59 ETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-----V--------IIVTSSLMKDMTGKEDLYRAAAIRALC 125 (865)
T ss_pred hhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-----h--------hhhhHHHHhhccCCCcchhHHHHHHHH
Confidence 345567888889999999988888777666544332111 0 123345555555667889999999998
Q ss_pred HHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 002596 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (902)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~ 285 (902)
.++... ....+..++. +..-|+++.+...++-.=..+.....+....+...+-+ ...+.+.-++..|+.+
T Consensus 126 ~I~d~~---m~~~iery~k---qaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalgl 195 (865)
T KOG1078|consen 126 SIIDGT---MLQAIERYMK---QAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGL 195 (865)
T ss_pred hhcCcc---hhHHHHHHHH---hHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHH
Confidence 887432 3333333333 33445555555544433333333333333322222222 1222233456677777
Q ss_pred HHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc
Q 002596 286 WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (902)
Q Consensus 286 l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~ 365 (902)
+..+.+. .+-.+.+++..+.+...++ ....|
T Consensus 196 Lyqirk~------drla~sklv~~~~~~~~~~-------------------------------------------~~A~~ 226 (865)
T KOG1078|consen 196 LYQIRKN------DRLAVSKLVQKFTRGSLKS-------------------------------------------PLAVC 226 (865)
T ss_pred HHHHHhh------hHHHHHHHHHHHccccccc-------------------------------------------hhHHH
Confidence 7776543 1112233333322211100 00112
Q ss_pred cHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (902)
-.-+.+..+++.. ......+++++..++.+.. -.+-..|..++..+.......+.| .+..+-..+.++
T Consensus 227 ~lir~~~~~l~~~-----~~~~s~~~~fl~s~l~~K~---emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp 294 (865)
T KOG1078|consen 227 MLIRIASELLKEN-----QQADSPLFPFLESCLRHKS---EMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSP 294 (865)
T ss_pred HHHHHHHHHhhhc-----ccchhhHHHHHHHHHhchh---HHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCc
Confidence 1112223333222 2334467888889888776 666666777777766555544444 566666678899
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHH
Q 002596 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (902)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l 525 (902)
.+.+|.+|..+|.+++...+... ...=..+-..+.|.|.. -|..|+..+.+...+. -.+.++..+
T Consensus 295 ~~~lRfaAvRtLnkvAm~~P~~v---------~~cN~elE~lItd~Nrs---Iat~AITtLLKTG~e~---sv~rLm~qI 359 (865)
T KOG1078|consen 295 KVALRFAAVRTLNKVAMKHPQAV---------TVCNLDLESLITDSNRS---IATLAITTLLKTGTES---SVDRLMKQI 359 (865)
T ss_pred HHHHHHHHHHHHHHHHHhCCccc---------cccchhHHhhhcccccc---hhHHHHHHHHHhcchh---HHHHHHHHH
Confidence 99999999999999988665421 11112233344566643 4555566666654322 222333333
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccH
Q 002596 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQ 605 (902)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~ 605 (902)
.....+-..+.+..+.+++.+++...+ ..-..+|+.|...+.+.+ .-.....+++++..++......=.
T Consensus 360 ~~fv~disDeFKivvvdai~sLc~~fp------~k~~~~m~FL~~~Lr~eG-g~e~K~aivd~Ii~iie~~pdsKe---- 428 (865)
T KOG1078|consen 360 SSFVSDISDEFKIVVVDAIRSLCLKFP------RKHTVMMNFLSNMLREEG-GFEFKRAIVDAIIDIIEENPDSKE---- 428 (865)
T ss_pred HHHHHhccccceEEeHHHHHHHHhhcc------HHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHhCcchhh----
Confidence 334433333444455666666665443 223445666666666522 112224667777766653332111
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHH
Q 002596 606 PVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFA 685 (902)
Q Consensus 606 ~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~ 685 (902)
.-...+...++++ ++..-+ ..+..-+|.+...--..+.....++...-=++..||..|+.
T Consensus 429 ~~L~~LCefIEDc----------------e~~~i~----~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~ 488 (865)
T KOG1078|consen 429 RGLEHLCEFIEDC----------------EFTQIA----VRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVS 488 (865)
T ss_pred HHHHHHHHHHHhc----------------cchHHH----HHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHH
Confidence 1112222222211 111111 12233333322111111123333333333345677777777
Q ss_pred HHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH
Q 002596 686 LLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 686 ~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
++..+...+. ... +.+...+.+++.+. +.+||..|..++..+-
T Consensus 489 alaKfg~~~~-~l~---~sI~vllkRc~~D~----DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 489 ALAKFGAQDV-VLL---PSILVLLKRCLNDS----DDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHhcCCC-Ccc---ccHHHHHHHHhcCc----hHHHHHHHHHHHHHhh
Confidence 7766662221 122 33444556666666 4577777777766654
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.57 E-value=1.1e-07 Score=69.88 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhh
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~ 460 (902)
|.+|.+|+++||.+++.+++.+.++++.+++.+...|+|+++.||.+|+|+||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999975
No 86
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.55 E-value=8.7e-07 Score=72.79 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Q 002596 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (902)
Q Consensus 449 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~ 528 (902)
.|..++.+|..++..+.+. ..+|++.+++.++.++.|++.+||..||.+|.++++.++..+.+|+++|++.|.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999998887753 78899999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhhHHH
Q 002596 529 FGKYQRRNLRI 539 (902)
Q Consensus 529 l~~~~~~~~~~ 539 (902)
+.+.+..++..
T Consensus 77 ~~D~d~~Vr~~ 87 (97)
T PF12755_consen 77 SADPDENVRSA 87 (97)
T ss_pred HcCCchhHHHH
Confidence 99888776653
No 87
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00055 Score=70.48 Aligned_cols=553 Identities=14% Similarity=0.136 Sum_probs=261.4
Q ss_pred CChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH--------HH-HHHHhcCCCHHHHHHHHHHHHHHhcccch
Q 002596 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL--------PR-LLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (902)
Q Consensus 143 ~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~--------~~-l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (902)
....+|.+|+.++.......+...-- .++..++ |. +.-.+.|+++..|..|++.+..+.+....
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~y-------gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~ 80 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLY-------GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ 80 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhh-------ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH
Confidence 34578999999998888776542100 0111111 22 23467889999999999999887754211
Q ss_pred -----------hhHH-------hHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhh-hh-hhHHHHHHHHHhhhc
Q 002596 214 -----------ALFV-------SMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSF-LE-PHLRNLFEYMLQVNK 272 (902)
Q Consensus 214 -----------~~~~-------~~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~-~~-~~l~~i~~~~~~~~~ 272 (902)
.+.+ .+...-..++..+ .+..+.+-.++++||..++...|-. ++ ..+-.++..+-..++
T Consensus 81 fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~ 160 (728)
T KOG4535|consen 81 FLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR 160 (728)
T ss_pred HHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 1111 1112222333322 3455677888999999998876643 21 233345555555677
Q ss_pred CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC------hhhhhhhhhhccCCCCCCCCCCCcccccc
Q 002596 273 DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA------DDDESLVEAEEDESLPDRDQDLKPRFHSS 346 (902)
Q Consensus 273 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~------~~d~~~~~~~~~~~~~~~~~~i~p~~~~~ 346 (902)
+.|..++..++-.+..++..... ++++-..+-.-.... -.-.+||.+-++ ++..
T Consensus 161 ~~d~~v~vs~l~~~~~~v~t~~~-------~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~-----~~~~-------- 220 (728)
T KOG4535|consen 161 HKDVNVRVSSLTLLGAIVSTHAP-------LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPA-----GPSL-------- 220 (728)
T ss_pred cCCCChhhHHHHHHHHHHhcCCC-------CHHHHHHhcCCCccccccCCCCCChHHHHhcCC-----Cchh--------
Confidence 88999999999998888766211 112111111111100 011234422111 0000
Q ss_pred cCCCCCCCCCCC--ccccccccHHHHHHHHHHHHHhhcCcc--hhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc
Q 002596 347 RLHGSENPEDDD--DDIVNVWNLRKCSAAALDVLSNVFGDE--ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (902)
Q Consensus 347 ~~~~~~~~~~dd--~d~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 422 (902)
++.++.| ...+..|-+|-+- .++-..+.+ ........+. ....+ -.+|-.++..|..++..
T Consensus 221 -----~e~~~~~~~~~~~~~~~i~~~~-----~i~~~~~~~s~~~~~~~~~~~-~~~~p----s~~rle~~qvl~~~a~~ 285 (728)
T KOG4535|consen 221 -----EETSVSSPKGSSEPCWLIRLCI-----SIVVLPKEDSCSGSDAGSAAG-STYEP----SPMRLEALQVLTLLARY 285 (728)
T ss_pred -----hhhccCCccCCCCCcceeeeee-----eeeecCCccccchhhHHhhhc-CccCC----chhHHHHHHHHHHHHHH
Confidence 0000000 0111222221110 000000000 0000000000 00111 34677788888888776
Q ss_pred chhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHH-HHHH---------hcC-C
Q 002596 423 CIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG-LLKR---------ILD-T 491 (902)
Q Consensus 423 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~-l~~~---------l~d-~ 491 (902)
.+ -..-++-++...+...+.++.|.+...+..++..+.........|..-+ .++... +-.. .-| .
T Consensus 286 ~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k---~~~q~~~fw~~~l~~p~~~~~YDs~ 361 (728)
T KOG4535|consen 286 FS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTK---APDQRAPFWTMMLNGPLPRALYDSE 361 (728)
T ss_pred HH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCccc---chhhhccHHHHHccCCChhhhhhhc
Confidence 54 2345677777888888999999999999999888877655321111111 111111 1000 112 2
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH
Q 002596 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (902)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~-~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~ 570 (902)
.+..+.++|.++.++.......+..--......+..--++.+.. +...+..+++..+-.-+-.. +..+...-...+..
T Consensus 362 ~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~-d~~fv~~aa~~il~ 440 (728)
T KOG4535|consen 362 HPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ-DVIFVADAANAILM 440 (728)
T ss_pred CCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh-hHHHHHHHHHHHHH
Confidence 34567788988888876543333221112222222222222222 22233333332211100000 00111111111111
Q ss_pred HHhcCCCCCcch---hhHHHHHHHHHHHhcccccc---ccHHHHHHHH-HHHHHHHHHhhcccccCCCCchhHHHHHhhh
Q 002596 571 KWQQLPNSDKDL---FPLLECFTSIAQALGAGFTQ---FAQPVFQRCI-NIIQTQQLAKVDSVAAGAQYDKEFVVCCLDL 643 (902)
Q Consensus 571 ~l~~~~~~~~~~---~~~l~~l~~i~~~~g~~f~~---~~~~i~~~l~-~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~ 643 (902)
.+. ++.+ .+..=+++.|..++-.+... +...+...++ +.+.....+..+ ...+...+.+.
T Consensus 441 sl~-----d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad--------~dkV~~navra 507 (728)
T KOG4535|consen 441 SLE-----DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASAD--------KDKVKSNAVRA 507 (728)
T ss_pred Hhh-----hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh--------hhhhhhHHHHH
Confidence 111 1111 23334456666555433221 3333332222 222222221111 11244456677
Q ss_pred HHHHHHHHhhhH----HhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhch--HhhHHhHHHHHHHHHHhcCCCC
Q 002596 644 LSGLAEGLGSGI----ESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP--VHLQARLSDFLDIAAKQLNTPK 717 (902)
Q Consensus 644 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~~l~~~~ 717 (902)
++++.+.+..-. ...++. .+...+-.........||-.++.++|++.++-. -+-.+|.+.+++.+...+.+-.
T Consensus 508 LgnllQvlq~i~~~~~~e~~~~-~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 508 LGNLLQFLQPIEKPTFAEIIEE-SIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HhhHHHHHHHhhhccHHHHHHH-HHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 777766554221 111111 111111111112345688899999999998632 2234788899999998887654
Q ss_pred CccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCC
Q 002596 718 LKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHS 761 (902)
Q Consensus 718 ~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~ 761 (902)
|..||.+|+.+|..-+.. +++...+.-.+..++.++..+
T Consensus 587 ---NFKVRi~AA~aL~vp~~r--e~~~d~~~Lsw~~lv~aLi~s 625 (728)
T KOG4535|consen 587 ---NFKVRIRAAAALSVPGKR--EQYGDQYALSWNALVTALQKS 625 (728)
T ss_pred ---cceEeehhhhhhcCCCCc--ccchhHHhHHHHHHHHHHHHH
Confidence 789999999888776543 334444555555555555433
No 88
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00011 Score=76.11 Aligned_cols=321 Identities=13% Similarity=0.121 Sum_probs=193.8
Q ss_pred HHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHH
Q 002596 375 LDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (902)
Q Consensus 375 l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 454 (902)
+.+.....++...+.++..+.....+.. |+.|......+..+.....-.-.+.+.+++..+.....||+..+|..||
T Consensus 203 lqr~m~~~~~~~~~~il~q~~ss~ts~~---~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~ 279 (533)
T KOG2032|consen 203 LQRFMACVQDLEMGKILAQLLSSITSEK---ENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMAC 279 (533)
T ss_pred HHHHHHhhCCccHHHHHhhcccccchhc---ccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHH
Confidence 3333334444444444444444444555 8888887766666654322111256777888888899999999999999
Q ss_pred HHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhcc
Q 002596 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 455 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~ 532 (902)
.+|++.+...+. ....+...++..++.++-|+ +..|+-.+..+|..+.+.. ...+.+|+-++--.+...+++.
T Consensus 280 r~L~~~as~~P~-----kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se 354 (533)
T KOG2032|consen 280 RGLGNTASGAPD-----KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE 354 (533)
T ss_pred HHHHHHhccCcH-----HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc
Confidence 999999988654 36778888999999888764 6899999999999988887 6789999999999999999888
Q ss_pred chhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHH
Q 002596 533 QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (902)
Q Consensus 533 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~ 612 (902)
+.+.+..++...+.++.-.|..... .+.+++...+...+-...+..+.+ ..+.+...+..++.+ +.+.+....-
T Consensus 355 ~~~~R~aa~~Lfg~L~~l~g~~~e~-~Fte~v~k~~~~lllhl~d~~p~v---a~ACr~~~~~c~p~l--~rke~~~~~q 428 (533)
T KOG2032|consen 355 DDKMRAAAFVLFGALAKLAGGGWEE-FFTEQVKKRLAPLLLHLQDPNPYV---ARACRSELRTCYPNL--VRKELYHLFQ 428 (533)
T ss_pred ChhhhhhHHHHHHHHHHHcCCCchh-hhHHHHHhccccceeeeCCCChHH---HHHHHHHHHhcCchh--HHHHHHHHHh
Confidence 8888888888888888877765441 344444422222222222122322 222233333333322 1111111111
Q ss_pred HHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHH----HHhcCCChHHHHHHHHHHH
Q 002596 613 NIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL----QCCMDDASDVRQSAFALLG 688 (902)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~vr~~a~~~l~ 688 (902)
+.++. +- .+ +..+.+..-.....+.+. +.-++. ..++...+.+|..+...-+
T Consensus 429 ~~ld~---------------~~-~~------~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~ 484 (533)
T KOG2032|consen 429 ESLDT---------------DM-AR------FQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTT 484 (533)
T ss_pred hhhHH---------------hH-HH------HHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHH
Confidence 01100 00 01 111111111112222221 222222 2234455678888888778
Q ss_pred HHHhhchHhhHHhHH--HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHH
Q 002596 689 DLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAV 737 (902)
Q Consensus 689 ~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~ 737 (902)
....+......++.. ++...+.....++ .++++..|..|++.+..
T Consensus 485 ~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp----~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 485 RSVDSLVRAACSSADGLQLRSSLSTLWRDP----RPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHccCC----CchhHHHHHHHhhhHhh
Confidence 777776666555543 5666666666776 67999999999998764
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.50 E-value=0.0028 Score=66.92 Aligned_cols=487 Identities=16% Similarity=0.141 Sum_probs=255.4
Q ss_pred cchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHhhChh
Q 002596 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-SAEVRKLVCAAFNLLIEVRPS 254 (902)
Q Consensus 176 ~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~ 254 (902)
.....++=.+.+++++.++..|.....++..+...-.+.+.. ...+..-++.. +..++-.|+..|..++...
T Consensus 61 ~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~-----tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~-- 133 (898)
T COG5240 61 ATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMG-----TSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE-- 133 (898)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHH-----HHHHHHhhccCCccccccHHHHHHHHhcCcc--
Confidence 344667778899999999999998888887776543222211 12222222222 3357777887777665432
Q ss_pred hhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCC
Q 002596 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (902)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~ 334 (902)
..+.+..++. +..-+....++..|+-.-..+. +......+.+....-...+..-+
T Consensus 134 -tv~~~er~l~---~a~Vs~~~a~~saalv~aYhLl--p~~~~~~~rw~ne~qeav~~l~q------------------- 188 (898)
T COG5240 134 -TVYDFERYLN---QAFVSTSMARRSAALVVAYHLL--PNNFNQTKRWLNETQEAVLDLKQ------------------- 188 (898)
T ss_pred -hhhhHHHHhh---hhccccchhhhhhHHHHhhhhc--cccHHHHHHHHHHHHHHHhhHhh-------------------
Confidence 1122223222 2334444555555543322221 11233333333322211111000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC-cchhhhhHHHHHHhhccCCCCchHHHHHHH
Q 002596 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-DEILPTLMPVIQAKLSASGDEAWKDREAAV 413 (902)
Q Consensus 335 ~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~ 413 (902)
-|.++. .++.+. .-+ -..-..+++-+.+.-. +.+ .+.-+.+++.++.. .+...+.+
T Consensus 189 -----~p~~~~-----n~gy~P-------n~~-~isqYHalGlLyq~kr~dkm---a~lklv~hf~~n~s--mknq~a~V 245 (898)
T COG5240 189 -----FPNQHG-----NEGYEP-------NGN-PISQYHALGLLYQSKRTDKM---AQLKLVEHFRGNAS--MKNQLAGV 245 (898)
T ss_pred -----CcCccC-----CcccCC-------CCC-hHHHHHHHHHHHHHhcccHH---HHHHHHHHhhcccc--cccchhhe
Confidence 011111 111111 001 1233455555555543 222 11222333333221 44556666
Q ss_pred HHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCH
Q 002596 414 LALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK 493 (902)
Q Consensus 414 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~ 493 (902)
+.+..+.+-.. .-.+.+.++.|++-.-++|.-..|.--++.++..++..-. ..+++.+.+..|-..|..+..
T Consensus 246 ~lvr~~~~ll~-~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-------~~~~~~~~vs~L~~fL~s~rv 317 (898)
T COG5240 246 LLVRATVELLK-ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV-------GSQFVDQTVSSLRTFLKSTRV 317 (898)
T ss_pred ehHHHHHHHHH-hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHhcchH
Confidence 66555554333 2245677788888888888888888888888888876442 567788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcccch---HhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH
Q 002596 494 RVQEAACSAFATLEEEAAEELA---PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (902)
Q Consensus 494 ~v~~~a~~al~~l~~~~~~~~~---p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~ 570 (902)
..|-+|.+.|..++-..+..+. +-++.++ .+ .++..+.-||.++.++..+ +-++.++..+..
T Consensus 318 ~~rFsA~Riln~lam~~P~kv~vcN~evEsLI-------sd---~Nr~IstyAITtLLKTGt~-----e~idrLv~~I~s 382 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKVSVCNKEVESLI-------SD---ENRTISTYAITTLLKTGTE-----ETIDRLVNLIPS 382 (898)
T ss_pred HHHHHHHHHHHHHHhhCCceeeecChhHHHHh-------hc---ccccchHHHHHHHHHcCch-----hhHHHHHHHHHH
Confidence 8899999999998876654432 2233332 22 3344556778877775433 456667766655
Q ss_pred HHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHH
Q 002596 571 KWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEG 650 (902)
Q Consensus 571 ~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~ 650 (902)
.+...+++-+ .-+++++..+...++..-..|+.- +...|.+.. ..++...+.++++.+++.
T Consensus 383 fvhD~SD~FK--iI~ida~rsLsl~Fp~k~~s~l~F----L~~~L~~eG-------------g~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 383 FVHDMSDGFK--IIAIDALRSLSLLFPSKKLSYLDF----LGSSLLQEG-------------GLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HHHhhccCce--EEeHHHHHHHHhhCcHHHHHHHHH----HHHHHHhcc-------------cchHHHHHHHHHHHHHhh
Confidence 5555443322 234555555555554443333332 222333211 345555666777666654
Q ss_pred HhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhH--HhHHHHHHHHHHhcCCCCCccchhHhhhH
Q 002596 651 LGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQ--ARLSDFLDIAAKQLNTPKLKETVSVANNA 728 (902)
Q Consensus 651 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~~l~~~~~~~~~~v~~~a 728 (902)
.+..-+ ..+..|...+.|... -+-++.++|-+.+-.+..-. .|+..+...++-. |..||.+|
T Consensus 444 ~p~skE------raLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE--------N~ivRsaA 507 (898)
T COG5240 444 DPDSKE------RALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILE--------NNIVRSAA 507 (898)
T ss_pred CchHHH------HHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh--------hhHHHHHH
Confidence 332221 233333344444321 22344444444444432221 2444444443321 56899999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHh
Q 002596 729 CWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (902)
Q Consensus 729 ~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (902)
..||..++....+-+.| ..+...+-.++++.+ +.+|+.|..++-.+-
T Consensus 508 v~aLskf~ln~~d~~~~--~sv~~~lkRclnD~D---deVRdrAsf~l~~~~ 554 (898)
T COG5240 508 VQALSKFALNISDVVSP--QSVENALKRCLNDQD---DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhccCccccccH--HHHHHHHHHHhhccc---HHHHHHHHHHHHhhh
Confidence 99999998776654322 222334445555553 789998877765544
No 90
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.0039 Score=68.04 Aligned_cols=318 Identities=15% Similarity=0.144 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
|. +..|.-.||.|-.|.... -+.-+-|++-+.-...++.....|+.++|-+-. .+...+...|.
T Consensus 356 Wa-KFtAtAsLGvIH~G~~~~---~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA------------~hG~~~~~yL~ 419 (929)
T KOG2062|consen 356 WA-KFTATASLGVIHRGHENQ---AMKLLAPYLPKEAGEGSGYKEGGALYALGLIHA------------NHGRGITDYLL 419 (929)
T ss_pred Hh-hhhhhhhcceeeccccch---HHHHhhhhCCccCCCCCCccccchhhhhhcccc------------CcCccHHHHHH
Confidence 75 677777888776654322 111122222222222444555668888886533 22334666666
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhh
Q 002596 486 KRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDIL 564 (902)
Q Consensus 486 ~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l 564 (902)
..|++ .++.||-.+|--|+-. ..+.. =..+.+.+...+.....-.-+.+--++|.+- +|..- ++.++.+
T Consensus 420 ~~Lk~~~~e~v~hG~cLGlGLa--~mGSa----~~eiYe~lKevLy~D~AvsGEAAgi~MGl~m--lGt~~--~eaiedm 489 (929)
T KOG2062|consen 420 QQLKTAENEVVRHGACLGLGLA--GMGSA----NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLM--LGTAN--QEAIEDM 489 (929)
T ss_pred HHHHhccchhhhhhhhhhccch--hcccc----cHHHHHHHHHHHhccchhhhhHHHHhhhhHh--hCcCc--HHHHHHH
Confidence 76765 3578888888777622 22221 2346666666665543322333333333322 22211 1222222
Q ss_pred hHHHHHHHhcCCCCCcchhhHHHHHHH----HHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHH
Q 002596 565 MPPLIAKWQQLPNSDKDLFPLLECFTS----IAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCC 640 (902)
Q Consensus 565 l~~l~~~l~~~~~~~~~~~~~l~~l~~----i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~a 640 (902)
.. .-. +.+..++++-++. +...-..++.+| +..+ .. +. |+-+|.
T Consensus 490 ~~----Ya~-----ETQHeki~RGl~vGiaL~~ygrqe~Ad~l----I~el----~~------------dk-dpilR~-- 537 (929)
T KOG2062|consen 490 LT----YAQ-----ETQHEKIIRGLAVGIALVVYGRQEDADPL----IKEL----LR------------DK-DPILRY-- 537 (929)
T ss_pred HH----Hhh-----hhhHHHHHHHHHHhHHHHHhhhhhhhHHH----HHHH----hc------------CC-chhhhh--
Confidence 22 111 1111233332221 111111133222 2222 11 00 333332
Q ss_pred hhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCcc
Q 002596 641 LDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE 720 (902)
Q Consensus 641 l~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 720 (902)
-.++.......|..-.. .+-.+|-...+|.+.+||..|+-.||-++-.-++.+ |..+..|..+.
T Consensus 538 ~Gm~t~alAy~GTgnnk-----air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~--------~s~V~lLses~--- 601 (929)
T KOG2062|consen 538 GGMYTLALAYVGTGNNK-----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--------PSTVSLLSESY--- 601 (929)
T ss_pred hhHHHHHHHHhccCchh-----hHHHhhcccccccchHHHHHHHHHheeeEecChhhc--------hHHHHHHhhhc---
Confidence 22233333333432222 133344445688999999999999998776655443 33444555444
Q ss_pred chhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHH
Q 002596 721 TVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCI 800 (902)
Q Consensus 721 ~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~ 800 (902)
|+.||-.|+-+||..+...|. ...+..|-++..++. .-+|+.|+.+++.+...+.+..-|.+..+.+.+.+
T Consensus 602 N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~---~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPV---DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred ChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChH---HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 789999999999988765543 122444556666664 68999999999999998888888889999888888
Q ss_pred hccCCC
Q 002596 801 ALSMIR 806 (902)
Q Consensus 801 ~l~~~~ 806 (902)
...++.
T Consensus 673 vI~dKh 678 (929)
T KOG2062|consen 673 VINDKH 678 (929)
T ss_pred Hhhhhh
Confidence 776543
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.42 E-value=0.0035 Score=70.70 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=116.1
Q ss_pred HHHHHHHHH-HHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHH
Q 002596 32 DKSQIWQQL-QQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (902)
Q Consensus 32 ~r~~a~~~L-~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr 110 (902)
.|..|.+.+ .+.....++..++.+++..-.+.+.++|.+--.+|.+. ....|+..-...+.+.+-+.|+++.+|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~y-----ak~~P~~~lLavNti~kDl~d~N~~iR 109 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERY-----AKLKPELALLAVNTIQKDLQDPNEEIR 109 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHhhccCCCHHHH
Confidence 566666655 56666556666777777554467888888777777543 233444445556777788899999999
Q ss_pred HHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhc
Q 002596 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (902)
Q Consensus 111 ~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 190 (902)
..+-..++.+ .-+.-|+.+++.+.+++.++++.+|..|..++.++.+.-...... ......+...+.
T Consensus 110 ~~AlR~ls~l---~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~----------~g~~~~l~~l~~ 176 (757)
T COG5096 110 GFALRTLSLL---RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----------LGLIDILKELVA 176 (757)
T ss_pred HHHHHHHHhc---ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc----------ccHHHHHHHHhh
Confidence 9876666654 335689999999999999999999999999999988754432211 123445566677
Q ss_pred CCCHHHHHHHHHHHHHHhcc
Q 002596 191 SPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~ 210 (902)
+.+|.|...|+.++..+-..
T Consensus 177 D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 177 DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred CCCchHHHHHHHHHHHhchh
Confidence 99999999999999887643
No 92
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.0014 Score=67.56 Aligned_cols=498 Identities=12% Similarity=0.121 Sum_probs=264.4
Q ss_pred CCHHHHHHHHHHHHHHHHh--------hhccCCHhHHH-HHHHHHhhhhhcCChHHHHHHHHHHHHHHhh----------
Q 002596 63 KSVEIRQAAGLLLKNNLRT--------AYKSMSPSNQQ-YIKSELLPCLGAADRHIRSTVGTIVSVVVQL---------- 123 (902)
Q Consensus 63 ~~~~~R~~a~~~Lk~~i~~--------~w~~l~~~~~~-~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~---------- 123 (902)
....+|+.|.+++-..++. +|..+-++.-+ .--..+.-+|+|+++..|..+-++.+.|...
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 4567899888887766532 57654332211 1112334578899999999999988888532
Q ss_pred cCcCchHHH-----------HHHHHHHh-ccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC
Q 002596 124 GGIAGWLEL-----------LQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (902)
Q Consensus 124 ~~~~~w~~l-----------l~~L~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 191 (902)
.++..+..+ ..-|...+ ....+.+.-..+.+|..++...+...- + -..+-.++..+-..+.+
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l-~-----~~~~~~~~~~ik~~i~~ 161 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRL-K-----LSLLTKVWNQIKPYIRH 161 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHH-H-----HHHHHHHHHHHHHHhhc
Confidence 133333221 11222222 233455666788888888887665311 0 02345667777888899
Q ss_pred CCHHHHHHHHHHHHHHhcccc--hhhHH--------------hH--HHHH------------------------------
Q 002596 192 PHTSLRKLSLGSVNQFIMLMP--SALFV--------------SM--DQYL------------------------------ 223 (902)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~--~~~~~--------------~~--~~~l------------------------------ 223 (902)
.++.||..++..+..++.... +++.. +. +++.
T Consensus 162 ~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~ 241 (728)
T KOG4535|consen 162 KDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLC 241 (728)
T ss_pred CCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeee
Confidence 999999999999988874311 11110 00 0011
Q ss_pred --------------HHHHHhhCC--CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 002596 224 --------------QGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (902)
Q Consensus 224 --------------~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~ 287 (902)
......+.. ....+|-.++++|..++... .....|+-++...+..++.+.++++...+-.++.
T Consensus 242 ~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~ 320 (728)
T KOG4535|consen 242 ISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGEADPSIQLHGAKLLE 320 (728)
T ss_pred eeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHH
Confidence 111111111 01246666777766665432 2333455555555555566666666665554444
Q ss_pred HhhccCCchhhHHhhhhh-----hHHHHH-hhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 002596 288 SYFEAQLPHENLKEFLPR-----LVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (902)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~-----l~~~ll-~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~ 361 (902)
.+... .+..+.|. +....+ ..|..... ++ ...|
T Consensus 321 ~lg~~-----lv~~~~P~~~k~~~q~~~fw~~~l~~p~--------------------------------~~-~~YD--- 359 (728)
T KOG4535|consen 321 ELGTG-----LIQQYKPDSTKAPDQRAPFWTMMLNGPL--------------------------------PR-ALYD--- 359 (728)
T ss_pred HHHHH-----HhhhcCCCcccchhhhccHHHHHccCCC--------------------------------hh-hhhh---
Confidence 43221 11011111 000000 00000000 00 0000
Q ss_pred cccccHHHHHHHHHHHHHhhc----CcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHH
Q 002596 362 VNVWNLRKCSAAALDVLSNVF----GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVA 436 (902)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~ 436 (902)
....++..++...+.+++..- ++. -....+.+....++. ++-.+|-+|+.+++...-... .....+..+...
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~d~--~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~ 436 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPND-RQTLCITFLLGCNDS--KNRLVKAAASRALGVYVLHPCLRQDVIFVADAAN 436 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhcccch--HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHH
Confidence 011244455555555544332 221 112333333344432 226677888888776554322 222345666777
Q ss_pred HHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCc----chhhHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHH
Q 002596 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN----GREQFEKVLMGLLKRIL--D-TNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~----~~~~~~~il~~l~~~l~--d-~~~~v~~~a~~al~~l~~~ 509 (902)
.++..+.|..-.+|.-++|++|.+...+...+ +. ...+....+..++.... + .+.+|+..|..+|+++...
T Consensus 437 ~il~sl~d~~ln~r~KaawtlgnITdAL~~~~--Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 437 AILMSLEDKSLNVRAKAAWSLGNITDALIVNM--PTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC--CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 78888999999999999999999998775421 11 12223333444333222 2 2478999999999999987
Q ss_pred hcccchHhHHHHHHHHHHHHhc-----cchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhh
Q 002596 510 AAEELAPRLEIILQHLMMAFGK-----YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFP 584 (902)
Q Consensus 510 ~~~~~~p~l~~i~~~l~~~l~~-----~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 584 (902)
......+-+..+++.=+..+-. ...+++-+++.+++++.+.-.-.+.+-++...+.|.|...+.+.. +-+....
T Consensus 515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~ 593 (728)
T KOG4535|consen 515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIR 593 (728)
T ss_pred HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeeh
Confidence 7655555555565543333322 123667789999999987654445445888899998888877653 2222233
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHH
Q 002596 585 LLECFTSIAQALGAGFTQFAQPVFQRCINIIQ 616 (902)
Q Consensus 585 ~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~ 616 (902)
+-..+...++-. +|...++-.+..++.+|.
T Consensus 594 AA~aL~vp~~re--~~~d~~~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 594 AAAALSVPGKRE--QYGDQYALSWNALVTALQ 623 (728)
T ss_pred hhhhhcCCCCcc--cchhHHhHHHHHHHHHHH
Confidence 333333333222 333334444555554444
No 93
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.41 E-value=1.3e-06 Score=77.51 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=89.1
Q ss_pred hHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002596 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (902)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (902)
+++.+.+.+.+.+ |..|+.++.+++.++....+.....+. .+++.+++.++|+++.+|..++|++++++......
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~- 83 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN- 83 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-
Confidence 5667777888888 999999999999999875544444454 68889999999999999999999999998754321
Q ss_pred cCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 469 GHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 469 ~~~~~~~~~-~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
..... ..+++.+.+.+.+.+..++..++++|.++++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 12222 3478999999999899999999999998863
No 94
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0008 Score=73.26 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcCCChHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhhhccCCHh-
Q 002596 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPS- 89 (902)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~-~~~~p~~~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~- 89 (902)
.-.++.+.|+ +++.+ ++-.|.+.+-. +.+-..+...+.+|..-- .+.+ ..||+.+-..|+-++.-
T Consensus 21 ~~~~ik~~Le---k~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~--------~elKKLly~ywE~vPKt~ 88 (948)
T KOG1058|consen 21 SEDEIKEKLE---KGDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRN--------HELKKLLYYYWELVPKTD 88 (948)
T ss_pred chHHHHHHHh---cCChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCc--------hHHHHHHHHHHHHccccC
Confidence 3356666666 46666 77677766643 444444555555555310 1222 34677777889754321
Q ss_pred ----HH---HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhc
Q 002596 90 ----NQ---QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (902)
Q Consensus 90 ----~~---~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~ 162 (902)
.+ -.+.+..-+-|++|+..||-. ++.-+++...++-...++|.+.+++.....-+|..|..++..|.+.+
T Consensus 89 ~dgkl~~EMILvcna~RkDLQHPNEyiRG~---TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~ 165 (948)
T KOG1058|consen 89 SDGKLLHEMILVCNAYRKDLQHPNEYIRGS---TLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF 165 (948)
T ss_pred CCcccHHHHHHHHHHHhhhccCchHhhcch---hhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh
Confidence 11 223444445678999999976 56666776666777889999999999999999999999999998863
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00047 Score=73.89 Aligned_cols=296 Identities=17% Similarity=0.163 Sum_probs=175.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccC-----Cchh
Q 002596 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-----LPHE 297 (902)
Q Consensus 223 l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~-----~~~~ 297 (902)
+..+..+.++.+..||..|+++|..+.+. .+ + -..+.+...+.+.|.+++||..|+..+....+.. ...+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~k-L---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEG-FK-L---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccc-cc-c---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 44466777888899999999999998872 11 1 1345566677788999999999877654443331 0000
Q ss_pred hHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 002596 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (902)
Q Consensus 298 ~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~ 377 (902)
. +...+..+..+...+. +.+|.+|..|+++|+.
T Consensus 275 e-~kl~D~aF~~vC~~v~----------------------------------------------D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 275 E-EKLKDAAFSSVCRAVR----------------------------------------------DRSLSVRVEAAKALGE 307 (823)
T ss_pred h-hhhHHHHHHHHHHHHh----------------------------------------------cCceeeeehHHHHhch
Confidence 0 1111111111111111 1357899999999987
Q ss_pred HHhhcCcchhhhhHHHHHHhhccCCCCchH---HHHHHHHHHHHHHhcc-------hhhhhhhHHHHHH-----HHhhcc
Q 002596 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWK---DREAAVLALGAIAEGC-------IKGLYPHLSEIVA-----FLIPLL 442 (902)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~r~~a~~~l~~l~~~~-------~~~~~~~l~~i~~-----~l~~~l 442 (902)
+-+.-.+ + +.+.+.+.+-+.. ..|+ .|-.+...=|.++.|- .+.....-..++| .++.++
T Consensus 308 ~~~vSee-~---i~QTLdKKlms~l-RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 308 FEQVSEE-I---IQQTLDKKLMSRL-RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHHhHHH-H---HHHHHHHHHhhhh-hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec
Confidence 6654432 1 1222222222211 0021 1222222222222211 1111111222444 366778
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHH
Q 002596 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (902)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~ 522 (902)
.|+--.||.+|...++.++.. .+.+....+..|+..+.|.-..||..|..+|..+..+.. + =++.+
T Consensus 383 EDEf~EVR~AAV~Sl~~La~s---------sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i---~eeql 448 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATS---------SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--I---REEQL 448 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcC---------CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--e---cHHHH
Confidence 899999999999999998863 456677889999999999999999999999999988731 1 12345
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc
Q 002596 523 QHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA 598 (902)
Q Consensus 523 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~ 598 (902)
+.++..|.+...+++..+.+.++. ..-. +.+.++..+..++..+...+.+. ..++.|++.|++..+.
T Consensus 449 ~~il~~L~D~s~dvRe~l~elL~~----~~~~--d~~~i~m~v~~lL~~L~kyPqDr---d~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 449 RQILESLEDRSVDVREALRELLKN----ARVS--DLECIDMCVAHLLKNLGKYPQDR---DEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh----cCCC--cHHHHHHHHHHHHHHhhhCCCCc---HHHHHHHHHHhccChh
Confidence 555667777776777655555442 2211 22566777777777777655322 3788899988876654
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0031 Score=67.97 Aligned_cols=323 Identities=16% Similarity=0.199 Sum_probs=190.3
Q ss_pred HHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002596 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (902)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (902)
+..-+..+..+.+..+|..|+..|..+.+.+ . .-..+.....+.+.|....||.+|++.+.-+....
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--k-----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF--K-----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc--c-----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 3344677777888888888888887776621 1 12566788889999999999999999998887665
Q ss_pred ch------hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 002596 212 PS------ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (902)
Q Consensus 212 ~~------~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~ 285 (902)
|. .-....+..+..++....|-+..||..+.+.|+.+-....+.+..-++. .+.. ..|.
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK-------Klms---~lRR----- 330 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK-------KLMS---RLRR----- 330 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH-------HHhh---hhhh-----
Confidence 42 1223445667778888889999999999999998876555544332221 1111 0111
Q ss_pred HHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccc
Q 002596 286 WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (902)
Q Consensus 286 l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~ 365 (902)
|.+--+ .++. + ++. ..|.....|+ +++. .++ +|+++.
T Consensus 331 kr~ahk---rpk~-----------l-----~s~---GewSsGk~~~-----advp-----------see--~d~~~~--- 367 (823)
T KOG2259|consen 331 KRTAHK---RPKA-----------L-----YSS---GEWSSGKEWN-----ADVP-----------SEE--DDEEEE--- 367 (823)
T ss_pred hhhccc---chHH-----------H-----Hhc---CCcccCcccc-----ccCc-----------hhh--cccccc---
Confidence 110000 0000 0 000 1121111110 0000 000 111100
Q ss_pred cHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (902)
+ .++.- ....+...+.++- ..+|.+|+..++.++-..+. +-...+.++.-.++|.
T Consensus 368 s--------------iI~sG----ACGA~VhGlEDEf---~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 368 S--------------IIPSG----ACGALVHGLEDEF---YEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred c--------------ccccc----ccceeeeechHHH---HHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 0 01100 0011222344555 88999999999998875443 3344677788889999
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHH
Q 002596 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (902)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l 525 (902)
...||--|+.++..++.++. .-++.++.++..+.|.+..||++. ..++..+.-.-...+...+..+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~----------i~eeql~~il~~L~D~s~dvRe~l----~elL~~~~~~d~~~i~m~v~~l 488 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA----------IREEQLRQILESLEDRSVDVREAL----RELLKNARVSDLECIDMCVAHL 488 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe----------ecHHHHHHHHHHHHhcCHHHHHHH----HHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999988753 124567777888889999999864 4444444433345666777777
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHH
Q 002596 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (902)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~ 571 (902)
++.|..+. ..+..++.|++.+.+.-+ ..+-.+|..+..+
T Consensus 489 L~~L~kyP-qDrd~i~~cm~~iGqnH~------~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 489 LKNLGKYP-QDRDEILRCMGRIGQNHR------RLVLSNMGRFLEK 527 (823)
T ss_pred HHHhhhCC-CCcHHHHHHHHHHhccCh------hhHHHHHHHHHHh
Confidence 77777653 223345667766655432 3444445444443
No 97
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.30 E-value=0.0069 Score=70.17 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchH
Q 002596 585 LLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNL 664 (902)
Q Consensus 585 ~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l 664 (902)
+--++..+++.+|..+...++.+...++..++.... ..+-....++++..++..+|..+.+.++ .
T Consensus 753 ael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~------------~~d~~~~s~~vf~s~~~~m~s~l~~~~~---~ 817 (1549)
T KOG0392|consen 753 AELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLID------------GNDEFLSSFEVFNSLAPLMHSFLHPLGS---L 817 (1549)
T ss_pred HHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCC------------CCcchhhhHHHHHHHHHhhhhhhhhhhh---h
Confidence 334567778888876666666666666655554221 1123344567788888888888888554 6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhchHh-hHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhh
Q 002596 665 RDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (902)
Q Consensus 665 ~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~ 743 (902)
+|.+..+..+....+|.+++.+++.+.+..... ..-..+.++|.+ .+.. ...-|..|...++.+........
T Consensus 818 l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll----~~~~---~~~~r~~a~e~~~~l~~~l~~~l 890 (1549)
T KOG0392|consen 818 LPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLL----GDLD---KFVRRQGADELIELLDAVLMVGL 890 (1549)
T ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchh---hHhhhhhHHHHHHHHHHhhcccc
Confidence 788889999999999999999999999876543 334444444432 2221 23445666666777776666777
Q ss_pred hhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCC
Q 002596 744 SPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE 785 (902)
Q Consensus 744 ~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (902)
-||.+-++..|.+++++.. +++|+.+..++++++...|-
T Consensus 891 ~~~~~Llv~pllr~msd~~---d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQI---DSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cccceeehhhhhcccccch---HHHHHHHHHHHHHHhccccc
Confidence 8999888888888887764 79999999999999986553
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.26 E-value=0.00051 Score=77.84 Aligned_cols=376 Identities=15% Similarity=0.146 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhc
Q 002596 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNM 314 (902)
Q Consensus 235 ~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l 314 (902)
+.+-..++..|..+++...-...-.-..+++.++.+++..+.++...+..|+..++-....+..+. -..+++.+...+
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHh
Confidence 344445667777777755443333345778888888888888888889999888865533333332 124555555544
Q ss_pred cCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcC--cchh-hhhH
Q 002596 315 IYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--DEIL-PTLM 391 (902)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~l~ 391 (902)
..... ..+..+..+|-.++..-. ..++ ..++
T Consensus 341 ~s~~~----------------------------------------------~l~~~aLrlL~NLSfd~~~R~~mV~~GlI 374 (708)
T PF05804_consen 341 PSENE----------------------------------------------DLVNVALRLLFNLSFDPELRSQMVSLGLI 374 (708)
T ss_pred cCCCH----------------------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence 32111 145566666665554331 1221 2355
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhcc-CCCChHHHHHHHHHHHhhHHHHhhhhc
Q 002596 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIG 469 (902)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~ 469 (902)
|.+..++.+++ .|..++..|..++..-. +.+-.+ .+.+|.+.+.+ ..+.+.+...+++.+..++..-...
T Consensus 375 PkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-- 446 (708)
T PF05804_consen 375 PKLVELLKDPN-----FREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-- 446 (708)
T ss_pred HHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH--
Confidence 66666776544 45677777877765211 111111 12455555543 3355666655555555554422110
Q ss_pred CCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 002596 470 HQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIG 545 (902)
Q Consensus 470 ~~~~~~~~-~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~---~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~ 545 (902)
.... ...++.+++........ -....+.++..+-+ ..+.+|+.++ ...+...+ .-...++++|
T Consensus 447 ----qlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~i~~L----~~~v~~~~--~ee~~vE~LG 513 (708)
T PF05804_consen 447 ----QLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDFIGDL----AKIVSSGD--SEEFVVECLG 513 (708)
T ss_pred ----HHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHHHHHH----HHHhhcCC--cHHHHHHHHH
Confidence 0000 12234444332211111 12234555555432 2344455444 44454433 2346678888
Q ss_pred HHHHHhcccCCchhhhh--hhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcccccccc--HHHHHHHHHHHHHHHHH
Q 002596 546 TLADAVGFELNQPVYLD--ILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFA--QPVFQRCINIIQTQQLA 621 (902)
Q Consensus 546 ~l~~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~--~~i~~~l~~~l~~~~~~ 621 (902)
.++.-.-.......++. .++|.+.+.+......+..+..++-.+|.++. .+...+.+ ..+++.++.++....
T Consensus 514 iLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kq-- 589 (708)
T PF05804_consen 514 ILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQ-- 589 (708)
T ss_pred HHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhC--
Confidence 88874322221113443 57888888886543333222444444454442 22333332 366777888777643
Q ss_pred hhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 002596 622 KVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (902)
Q Consensus 622 ~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 694 (902)
| |.+++...+-++..++.. ++....++.+..+...+...++|.+.++|+.+=.+++-++.+-
T Consensus 590 ---------e-DdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 590 ---------E-DDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ---------c-hHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 1 556766666666666554 3333334443457788889999999999987777666666554
No 99
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.26 E-value=0.045 Score=70.07 Aligned_cols=455 Identities=18% Similarity=0.189 Sum_probs=246.5
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHHHhcchh--hhhhh----HHHHHHHHhh-ccCCCChHHHHHHHHHHH-hhHHHH
Q 002596 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPH----LSEIVAFLIP-LLDDKFPLIRSISCWTLS-RFSKFI 464 (902)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~----l~~i~~~l~~-~l~d~~~~vr~~a~~~l~-~~~~~~ 464 (902)
.+..++...+ ...|..+......+..+... ...++ +..++..++. .+.|++|.+|.+....+. ++-...
T Consensus 485 ~~~~~~~~~~---~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~l 561 (2341)
T KOG0891|consen 485 CVDSYLEADD---SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQL 561 (2341)
T ss_pred HHHHHHhccc---HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhh
Confidence 3445555555 77888887777666544322 11222 3334443333 357899999998877776 111111
Q ss_pred hhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchh-hHHHHHHH
Q 002596 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDA 543 (902)
Q Consensus 465 ~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~-~~~~~~~a 543 (902)
. -...+..++..+.|..-.++..+...++.+++..+..+.|++.........-+...... +......-
T Consensus 562 a-----------Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 562 A-----------QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKL 630 (2341)
T ss_pred c-----------CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHH
Confidence 1 12445557788888888999999999988887666556666665544444333322111 11111111
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHh
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAK 622 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~ 622 (902)
...++.....-.. +|...++..+...+.... +.+ ..++++++.++...|.....+....++.+.+.+....
T Consensus 631 ~~~~i~~~~~~i~--~~v~~~l~~~~~~~~~~~---s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s--- 702 (2341)
T KOG0891|consen 631 LCELIISSPVLIS--PYVGPILLVLLPKLQDPS---SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQS--- 702 (2341)
T ss_pred hhHHHHHHHHHHH--hhcCchHHHHHHHHhccc---hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhh---
Confidence 1111111111111 566666666666666542 233 5788999999999998777777777777776665322
Q ss_pred hcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhchHhhHHh
Q 002596 623 VDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQAR 701 (902)
Q Consensus 623 ~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~ 701 (902)
...-+..++.+++.+...-|-...|+...|.++..+...... ....+|..++..+|... ...||
T Consensus 703 ----------~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g-----~~d~~ 767 (2341)
T KOG0891|consen 703 ----------SLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG-----ALDPY 767 (2341)
T ss_pred ----------hhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc-----ccchh
Confidence 112234566677777776666666776656677766654433 34567888888888322 23344
Q ss_pred HHHHHHHH--HHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 002596 702 LSDFLDIA--AKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (902)
Q Consensus 702 ~~~~l~~l--~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (902)
........ .+...... .... ....+....... ..+.|... +..+...+.++.. ......+ +.++-.
T Consensus 768 ~~~~~~~~~~~~~~~~~~---k~~~----~~~~~~~~~~~~~~e~~p~v~--I~~l~~~l~d~~~-~~~l~~~-~~a~~~ 836 (2341)
T KOG0891|consen 768 KHKVTEGTSASKISSEQI---KSDI----DISLLESGVNPSNDEYYPAVT--IHALMGILKDPSL-SIHHTAV-AQAIMH 836 (2341)
T ss_pred HHHHHhhhhhHhhhhccc---cccc----hHHHHHhhhhhhhhhhhhHHH--HHHHhhhhhhhhh-HHHHHHh-hhchhH
Confidence 33332222 22211110 0000 111112111111 22333222 2355555655532 2233333 233333
Q ss_pred HhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHH
Q 002596 779 LAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQV 858 (902)
Q Consensus 779 l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~ 858 (902)
+..........+++++++.++..+.. -...+++..+.-++..+...+..+.+..+.+...+..+..+.. .+...+.-+
T Consensus 837 i~~~~~~~~~l~l~qv~~~~~~~~r~-~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-~l~~~~~~l 914 (2341)
T KOG0891|consen 837 IFQSLGLKCVLFLDQVIPTLIDVMRS-CPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-SLQITIISL 914 (2341)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHh-cCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-HHHHHHHHH
Confidence 44444444566888888888877663 4445667777888887777777777888888888877553211 233333344
Q ss_pred HHHHHhhcChhhHHHHHhcCCHHHHHHHhhcccchhhhhh
Q 002596 859 LHGYKQMLRNGAWDQCMSALEPPVKDKLSKYQVHDSIVTL 898 (902)
Q Consensus 859 l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~y~~~~~~~~~ 898 (902)
+..+...++ ..|..+.+++-+.+...+..++..+-.++.
T Consensus 915 ~~~i~~~l~-~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~ 953 (2341)
T KOG0891|consen 915 IEDIAVALG-GEFKKYLPELLPTMLTVLQHDKSKDRVVSR 953 (2341)
T ss_pred HHHHHHHHH-hHHHHhhhhhccchheeecccccchHHHHH
Confidence 444444444 356666555444444444446655555543
No 100
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.22 E-value=2.4e-06 Score=78.95 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhcccc----CCCC----CCCcch
Q 002596 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS----DVPG----LAECPI 178 (902)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~----~~~~----~~~~~~ 178 (902)
+.||+++|.+++.|+..++|..||++++.+.+.+++ ++.....++.+|..+.+++.+.... +.+. .+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988 5778889999999999988641100 0000 011123
Q ss_pred hhhHHHHHHHhcCCC----HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002596 179 NIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l 245 (902)
+.++..+.+.++... ..+...+++|+.+++.+.+...... ..+++.+++.++++ +.+..|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 444555555555432 8899999999999999887554443 34788888888554 4477787775
No 101
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.18 E-value=5.6e-05 Score=71.56 Aligned_cols=133 Identities=18% Similarity=0.319 Sum_probs=102.8
Q ss_pred ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHH
Q 002596 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (902)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l 223 (902)
++.+|..++.+++.++..++.. ++..+|.+...|+|+++.||..|+.++..++.... ...-+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhh
Confidence 4678999999999999877653 36789999999999999999999999999985432 22223334
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhh-ChhhhhhhHHHHHHHHHhhhc-----CCCHHHHHHHHHHHHHhhc
Q 002596 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 224 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~~~l~~i~~~~~~~~~-----~~~~~v~~~al~~l~~l~~ 291 (902)
..+..++.|+++++|..|..+|..+... .+..+.+++.+++..+-.... ..+.+-+...+.|+.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 5566677899999999999999999887 777777777777766554433 2456667888888887765
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.02 Score=62.41 Aligned_cols=409 Identities=13% Similarity=0.137 Sum_probs=231.4
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----C--------CChHHHHHHHhhccCCCCHHHHHHHHH-HHH
Q 002596 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----F--------PDFNNYLAFILARAEGKSVEIRQAAGL-LLK 76 (902)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~----~--------p~~~~~l~~il~~~~~~~~~~R~~a~~-~Lk 76 (902)
.-.|++-|..=+.++.+-+ + .+|+..+.|.+... . .-|..-|++|..- +.+-..-|+-++ +|+
T Consensus 9 gmrGL~vFISDlRncq~ke-a-E~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll--g~dIdFGhmEaV~LLs 84 (938)
T KOG1077|consen 9 GMRGLAVFISDLRNCQSKE-A-EEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL--GYDIDFGHMEAVNLLS 84 (938)
T ss_pred CchhHHHHHHHhhhhhchH-H-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh--cCccccchHHHHHHhh
Confidence 3446777777777766554 2 67888888865432 1 1244556666543 334333333222 222
Q ss_pred HHH------Hhhhcc-C---CHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC--
Q 002596 77 NNL------RTAYKS-M---SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-- 144 (902)
Q Consensus 77 ~~i------~~~w~~-l---~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~-- 144 (902)
-.. ..-.-. + +.+.-..+-+.+.+-|.+.++..-..+-++++.|...+. -..+-+.+..++.+++
T Consensus 85 s~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~---~ea~~~DI~KlLvS~~~~ 161 (938)
T KOG1077|consen 85 SNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREM---AEAFADDIPKLLVSGSSM 161 (938)
T ss_pred cCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH---HHHhhhhhHHHHhCCcch
Confidence 111 000000 1 122223333444444556677766777778887766542 2233344445565553
Q ss_pred hhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHH
Q 002596 145 INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (902)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~ 224 (902)
+-+|+.|..+|..+.+..++.+.. .....+++.+|.|.+..|-.++...+..++...|+.+.-.++.-+.
T Consensus 162 ~~vkqkaALclL~L~r~spDl~~~----------~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs 231 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPDLVNP----------GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVS 231 (938)
T ss_pred HHHHHHHHHHHHHHHhcCccccCh----------hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHH
Confidence 478888889998999887665422 4567889999999999999999999999998888877665554444
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHhhCh-hhhhhhHH-HHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhh
Q 002596 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (902)
Q Consensus 225 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~l~-~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 302 (902)
.+........... .+..+ ..=.|.+. .++..+...-...|+.++..-.+++..+.........-+
T Consensus 232 ~L~riv~~~~t~~-----------qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k-- 298 (938)
T KOG1077|consen 232 RLSRIVVVVGTSL-----------QDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSK-- 298 (938)
T ss_pred HHHHHHhhcccch-----------hhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcccc--
Confidence 4433221111000 01000 00012222 122221111122355556555555555433200000000
Q ss_pred hhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhh
Q 002596 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNV 381 (902)
Q Consensus 303 l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~-a~~~l~~l~~~ 381 (902)
+. ..-+...+ -.+++. ++.+
T Consensus 299 --~v--------------------------------------------------------q~~na~naVLFeaI~-l~~h 319 (938)
T KOG1077|consen 299 --KV--------------------------------------------------------QHSNAKNAVLFEAIS-LAIH 319 (938)
T ss_pred --ch--------------------------------------------------------HhhhhHHHHHHHHHH-HHHH
Confidence 00 00001111 111111 1222
Q ss_pred c-C-cchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc--chhhhhhhHHHHHHHHhhccC-CCChHHHHHHHHH
Q 002596 382 F-G-DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG--CIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWT 456 (902)
Q Consensus 382 ~-~-~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~ 456 (902)
+ + ++.+...+..+-+++.+.+ .+.|+-|+..+..++.. ..+.++.| ...++..|+ +.+..||+.|...
T Consensus 320 ~D~e~~ll~~~~~~Lg~fls~rE---~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 320 LDSEPELLSRAVNQLGQFLSHRE---TNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred cCCcHHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHH
Confidence 2 1 2455556667777888888 89999999888877753 22334444 444566676 7888999999998
Q ss_pred HHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHH
Q 002596 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (902)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l 525 (902)
|-.+++ ......++..+++.+...+..+|+....=++-++|....++.-|.+.+++-+
T Consensus 393 LY~mcD-----------~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 393 LYAMCD-----------VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHhc-----------hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 877765 3455678888888888788999999888888899988888888888776644
No 103
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.15 E-value=4.1e-06 Score=61.58 Aligned_cols=55 Identities=38% Similarity=0.529 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHH
Q 002596 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (902)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l 735 (902)
+.+|..|+..||.++..++..+.++++.++|.+...|.++ +..||.+|+|+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~----~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD----DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS----SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999999999999887 569999999999975
No 104
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.012 Score=64.91 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCC
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (902)
..++..+++..+....++.= ...+..+..++.|.+ .+.-+...|+.+...++....| ..-+.++....-=.+
T Consensus 408 ~K~aivd~Ii~iie~~pdsK-e~~L~~LCefIEDce-----~~~i~~rILhlLG~EgP~a~~P--skyir~iyNRviLEn 479 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDSK-ERGLEHLCEFIEDCE-----FTQIAVRILHLLGKEGPKAPNP--SKYIRFIYNRVILEN 479 (865)
T ss_pred HHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHhcc-----chHHHHHHHHHHhccCCCCCCc--chhhHHHhhhhhhhh
Confidence 45556666665555554311 112233334443322 3445555555555544432211 011223333333467
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
..||.+|..++.+|+.. .......+...+..++.|.+..||.+|..++..+.+.
T Consensus 480 ~ivRaaAv~alaKfg~~---------~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGAQ---------DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhhHHHHHHHHHHHhcC---------CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 88999999999999821 1223345666667788899999999999999887744
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00046 Score=76.33 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=160.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCch
Q 002596 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQP 558 (902)
Q Consensus 479 ~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~ 558 (902)
+.+...+..+.|+.+.+|..+...+..+++.-...-.-....++......+.+.+..+..++..++.++++.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------- 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------- 798 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------
Confidence 346677778889999999999999999999653333334557888888999988888888888888888875
Q ss_pred hhhhhhhHHHHHHHhcCCCCC-cc-hhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhH
Q 002596 559 VYLDILMPPLIAKWQQLPNSD-KD-LFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEF 636 (902)
Q Consensus 559 ~~~~~ll~~l~~~l~~~~~~~-~~-~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~ 636 (902)
|-+.++|.+.+...+..+.. .+ ...+=|++..++.+.|+-+..|...+...+++.+. |+|..+
T Consensus 799 -y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr--------------epd~~~ 863 (982)
T KOG4653|consen 799 -YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR--------------EPDHEF 863 (982)
T ss_pred -cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--------------CchHHH
Confidence 33456777776555443222 12 24566899999999999888898888887776554 236678
Q ss_pred HHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHH----HHHHHh
Q 002596 637 VVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFL----DIAAKQ 712 (902)
Q Consensus 637 ~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l----~~l~~~ 712 (902)
|..++..++.+.........+++.+ .+..++.....|...-+|.+|+.++.++..+.|..+.|.+...+ ..+...
T Consensus 864 RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~ 942 (982)
T KOG4653|consen 864 RASSLANLGQLCQLLAFQVSDFFHE-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSY 942 (982)
T ss_pred HHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888988888776555555543 22233333345788899999999999999999988888654322 222222
Q ss_pred cCCCCCccchhHhhhHHHHHHHHH
Q 002596 713 LNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 713 l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
....+ +..+|-.|+.++.++-
T Consensus 943 vr~~~---dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 943 VRQHD---DDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HhcCc---hhHHHHHHHHHHHHHH
Confidence 22221 3366777777776653
No 106
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.11 E-value=0.00037 Score=66.02 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002596 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (902)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (902)
++.||..+..+++-++... ++.-...++.+..++.++++.+|..|+.+|..+...-.- +.-+.++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhHHH
Confidence 4689999999999888765 344556688899999999999999999999998764221 1225666888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcc-cchhhHHhHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHh
Q 002596 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIE 250 (902)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~-----~~~~vr~~~~~~l~~l~~ 250 (902)
+..+.|+++.||..|..++..+... .|..+.+.++.++..+-....+ .+.+-|...+..+.....
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999876 5666777776666655443322 344556666666655554
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.028 Score=61.36 Aligned_cols=333 Identities=11% Similarity=0.090 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 002596 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQF 207 (902)
Q Consensus 130 ~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~ 207 (902)
..++..+..-+.+.|+....-|+.+++.+-+.-. ...+-+.+-++|.++ ..-||+.|.-||-.+
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG~re~--------------~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L 175 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIGSREM--------------AEAFADDIPKLLVSGSSMDYVKQKAALCLLRL 175 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH--------------HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHH
Confidence 3445666666677788888889998877654211 123334444566554 457899888888888
Q ss_pred hcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 002596 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (902)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~ 287 (902)
....|+.+. ...+.+.+..+++|.+-.+--.+...+..++...|+.....++.-+..+.......+.+.
T Consensus 176 ~r~spDl~~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~--------- 244 (938)
T KOG1077|consen 176 FRKSPDLVN--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSL--------- 244 (938)
T ss_pred HhcCccccC--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccch---------
Confidence 877665432 345678888889888877777788888888888777655444433333322211111110
Q ss_pred HhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccH
Q 002596 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (902)
Q Consensus 288 ~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~ 367 (902)
-++ .+...-.|++..-+--+++... +. +| -..
T Consensus 245 --qdY-Tyy~vP~PWL~vKl~rlLq~~p-~~--------------------------------------~D------~~~ 276 (938)
T KOG1077|consen 245 --QDY-TYYFVPAPWLQVKLLRLLQIYP-TP--------------------------------------ED------PST 276 (938)
T ss_pred --hhc-eeecCCChHHHHHHHHHHHhCC-CC--------------------------------------CC------chH
Confidence 000 0111112333322212222221 00 00 125
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHH---HHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC
Q 002596 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDR---EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (902)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r---~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 444 (902)
|..-.+++.++.....+.. .+.+ ...+ .+.++-.-.++-.. +.-...+...+..+-+.+.+
T Consensus 277 r~~l~evl~~iLnk~~~~~------------~~k~---vq~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 277 RARLNEVLERILNKAQEPP------------KSKK---VQHSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSH 340 (938)
T ss_pred HHHHHHHHHHHHhccccCc------------cccc---hHhhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhc
Confidence 6666677766655543211 1122 2222 22222212222211 11134566677778888899
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHH
Q 002596 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~ 523 (902)
..+.+|+-|+..+..++..-. ....+..-...++..|+ +++..||..|...|-.+|+.. ....|+.
T Consensus 341 rE~NiRYLaLEsm~~L~ss~~-------s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~------Nak~IV~ 407 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSEF-------SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS------NAKQIVA 407 (938)
T ss_pred ccccchhhhHHHHHHHHhccc-------hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh------hHHHHHH
Confidence 999999999988888775321 22223333556666777 788999999999999998743 3456777
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhH
Q 002596 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMP 566 (902)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~ 566 (902)
.+++.+...+...++...--++.+++....+.. -|++.+++
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~--WyVdviLq 448 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYATDYS--WYVDVILQ 448 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHH
Confidence 777787776666666555556667777666665 67776665
No 108
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.055 Score=62.97 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=80.7
Q ss_pred hhhhhcCChHHHHHHHHHHHHHHhhcCc--------CchH-HHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccC
Q 002596 99 LPCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (902)
Q Consensus 99 l~~l~~~~~~vr~~~a~~l~~i~~~~~~--------~~w~-~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~ 169 (902)
+..|...+..+|+..-++.+.+.-.... ..-+ +++..|.+.+.+-++.+|-.+++++..+++.-....
T Consensus 318 v~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~--- 394 (1251)
T KOG0414|consen 318 VDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL--- 394 (1251)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc---
Confidence 3344556788999988888887644211 1223 488889999999999999999999999998644321
Q ss_pred CCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002596 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 170 ~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (902)
.....++...+..+.|.+.-||+.|++.+..+....|
T Consensus 395 ------~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 395 ------GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred ------cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 3457778888888899999999999999999987766
No 109
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.04 E-value=0.00039 Score=71.74 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=135.9
Q ss_pred HHHHHHHHHhccC-ChhhhhHHHHHHHH-HHhhchhccccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 002596 131 ELLQALVTCLDSN-DINHMEGAMDALSK-ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQF 207 (902)
Q Consensus 131 ~ll~~L~~~l~~~-~~~~r~~al~~L~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~ 207 (902)
.++..+...+++. ....+++|+.-|.. +|+... +++++++..++-.+++.+.+ .+...|..|++.|..+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sf--------svWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSF--------SVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREM 357 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccch--------hHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Confidence 3455555555544 55778888885544 444322 12245668888999999999 7889999999999999
Q ss_pred hcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHH
Q 002596 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA-AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (902)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~-~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l 286 (902)
...-|..+.+.-...+..++....|+..++-..|.+ |+..+....|.. .+..+.+.++. .|+.....++..+
T Consensus 358 l~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~~i~~~Ilt----~D~~~~~~~iKm~ 430 (516)
T KOG2956|consen 358 LTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIVNISPLILT----ADEPRAVAVIKML 430 (516)
T ss_pred HHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHHHHhhHHhc----CcchHHHHHHHHH
Confidence 998888888777766777778777776665444444 455555555542 33344444433 5666677778888
Q ss_pred HHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCcccccccc
Q 002596 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (902)
Q Consensus 287 ~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~ 366 (902)
..+++. ...+.+.+.++.+.|.+++....+ +-+
T Consensus 431 Tkl~e~-l~~EeL~~ll~diaP~~iqay~S~----------------------------------------------SS~ 463 (516)
T KOG2956|consen 431 TKLFER-LSAEELLNLLPDIAPCVIQAYDST----------------------------------------------SST 463 (516)
T ss_pred HHHHhh-cCHHHHHHhhhhhhhHHHHHhcCc----------------------------------------------hHH
Confidence 887775 245566777888888876644321 125
Q ss_pred HHHHHHHHHHHHHhhcC-cchhhhh
Q 002596 367 LRKCSAAALDVLSNVFG-DEILPTL 390 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~-~~~~~~l 390 (902)
+|++|.-||-.+...+| +.+.|++
T Consensus 464 VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 464 VRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 99999999999999999 5666654
No 110
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.034 Score=61.17 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=66.7
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (902)
+...+-+-|++|+..+|...+..+.++- ..+.+++++|.+..++..++.-||..|.-|+.++... .+.
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLk-----------E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~ 167 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLK-----------EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEH 167 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcC-----------cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhh
Confidence 5566778899999999999988877653 3567889999999999999999999999999988776 455
Q ss_pred chHhHHHHHHHHHH
Q 002596 514 LAPRLEIILQHLMM 527 (902)
Q Consensus 514 ~~p~l~~i~~~l~~ 527 (902)
+.|-.|+++...+.
T Consensus 168 L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 168 LIPDAPELIESFLL 181 (948)
T ss_pred hcCChHHHHHHHHH
Confidence 66667777766543
No 111
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.01 E-value=2e-05 Score=69.77 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (902)
+++.+++.+.++++.+|..++++++.++...+.. ...+.. .+++.+++.+.|++++++..|+++|.+++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 5777888888999999999999999998753321 233334 7899999999999999999999999999876533
Q ss_pred cchHhH-HHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 002596 513 ELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 513 ~~~p~l-~~i~~~l~~~l~~~~~~~~~~~~~al~~l~ 548 (902)
....+. ..+++.+.+.++..+..+++.+..++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222222 347888888998887788888888887664
No 112
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.01 E-value=0.00045 Score=74.57 Aligned_cols=252 Identities=12% Similarity=0.115 Sum_probs=156.2
Q ss_pred hhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHH
Q 002596 559 VYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVV 638 (902)
Q Consensus 559 ~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~ 638 (902)
|+...++..|+..+...+. .+=..++.|+-.+....++...|+...+++.+..++..-.. +| .++.+-.
T Consensus 22 p~~~~ll~~Lf~~i~~~~s--~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k---NP------snP~FnH 90 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGS--AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSK---NP------SNPRFNH 90 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-S--TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT---S---------HHHHH
T ss_pred hhHHHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---CC------CCcchhh
Confidence 7788888888888876432 12247899999999999999999999999999888865331 11 1556666
Q ss_pred HHhhhHHHHHHHHhhhHHhhhcc--chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhch-HhhHHhHHHHHHHHHHhcCC
Q 002596 639 CCLDLLSGLAEGLGSGIESLVAQ--SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNT 715 (902)
Q Consensus 639 ~al~~l~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~ 715 (902)
..++.++.+++...+.-...+.. +.++|.+...++.+-.+.--.++.+++.+.+..+ ..+.+....++|.+..-
T Consensus 91 ylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p--- 167 (435)
T PF03378_consen 91 YLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP--- 167 (435)
T ss_dssp HHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG---
T ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc---
Confidence 77888988888755432221111 2588888888887777777888999999998877 45555555666665532
Q ss_pred CCCccchhHhhhHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCC-ccCcChH
Q 002596 716 PKLKETVSVANNACWAIGELAVKARQEIS--PIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE-LVSPHME 792 (902)
Q Consensus 716 ~~~~~~~~v~~~a~~alg~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~ 792 (902)
..|+...--.+....|..+..+.+..+. .++..++....+++..... + ..+...+..++.+.|. .+.||++
T Consensus 168 -~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D---~~gF~LL~~iv~~~p~~~l~~yl~ 241 (435)
T PF03378_consen 168 -ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--D---HYGFDLLESIVENLPPEALEPYLK 241 (435)
T ss_dssp -GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--H---HHHHHHHHHHHHHS-HHHHGGGHH
T ss_pred -chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--c---hHHHHHHHHHHHHCCHHHHHHHHH
Confidence 2221111113333445555556665542 5677777777777765531 1 3355677888888876 4689999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHH-HHcCchhhh
Q 002596 793 HFMQPWCIALSMIRDDTEKEDAFRGLCAM-VKANPSGAL 830 (902)
Q Consensus 793 ~~l~~~~~~l~~~~d~~e~~~~~~~l~~l-i~~~p~~~~ 830 (902)
.++...+.+|...+...-.+.....++.+ ++.+|..+.
T Consensus 242 ~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li 280 (435)
T PF03378_consen 242 QIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLI 280 (435)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999998755554444443444433 333555443
No 113
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.97 E-value=0.0012 Score=68.40 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=127.7
Q ss_pred CCCCHHHHHHHHHHHH-HHHhhChhhhhhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHH
Q 002596 231 NDPSAEVRKLVCAAFN-LLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (902)
Q Consensus 231 ~~~~~~vr~~~~~~l~-~l~~~~~~~~~~~l~~i~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~ 308 (902)
++...+-++.++.-|. .+++.....-..|+..|+..+++.+.+ .++..+..|+..+..+++. .+..+..+.+-.+.
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~ 374 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAIC 374 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHH
Confidence 3434556777777444 444444444557888999999999888 6778889999999998887 44455555554444
Q ss_pred HHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhh
Q 002596 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (902)
Q Consensus 309 ~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (902)
.+++.-..+. +-..|.++..|+..++.+.|-..+.
T Consensus 375 K~Leaa~ds~---------------------------------------------~~v~~~Aeed~~~~las~~P~~~I~ 409 (516)
T KOG2956|consen 375 KVLEAAKDSQ---------------------------------------------DEVMRVAEEDCLTTLASHLPLQCIV 409 (516)
T ss_pred HHHHHHhCCc---------------------------------------------hhHHHHHHHHHHHHHHhhCchhHHH
Confidence 4433222110 1146888888898999998877666
Q ss_pred hhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHh
Q 002596 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
.+.|.+.. .| ...--+++..+..+.+... +.+...++++.|.+++..++.+..||.+|..||-.+...+.
T Consensus 410 ~i~~~Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 410 NISPLILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHhhHHhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 66666554 33 3333344557788888765 56788999999999999999999999999999988777654
No 114
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.95 E-value=0.0001 Score=60.78 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=67.0
Q ss_pred HHHHHhh-ccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcC
Q 002596 392 PVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (902)
Q Consensus 392 ~~l~~~l-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 470 (902)
+.+.+.+ ++++ |..|..++.+||.+.. +..++.+...++|+++.||..|++++|++..
T Consensus 2 ~~L~~~l~~~~~---~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPD---PQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHTSSS---HHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 5566666 6777 9999999999994421 3568888888899999999999999999853
Q ss_pred CcchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 002596 471 QNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFA 504 (902)
Q Consensus 471 ~~~~~~~~~il~~l~~~l~d-~~~~v~~~a~~al~ 504 (902)
...++.+.+.+.+ ++..||..|..+|+
T Consensus 61 -------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2456777777776 46778999998875
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.93 E-value=0.0028 Score=72.00 Aligned_cols=340 Identities=15% Similarity=0.172 Sum_probs=184.9
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcc
Q 002596 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (902)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (902)
+..++..++ -..| .++..|..+++...-...-.-..+++.+++.|+..+..+...+..+|.+++-+-... .
T Consensus 255 ~~~l~~kQe---qLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-----~ 325 (708)
T PF05804_consen 255 LQTLIRKQE---QLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENK-----D 325 (708)
T ss_pred HHHHHHHHH---HHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----H
Confidence 344444444 3334 777888899887754433333558888999999999999999999999888653321 1
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHh
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAV 551 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~ 551 (902)
.-.-..+++.+.+.+..++..++..+..+|.++.-.. .+.+.+ ..++|.|+..+.+.+ .+..++..+..+...-
T Consensus 326 ~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd 401 (708)
T PF05804_consen 326 EMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDD 401 (708)
T ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCH
Confidence 1123468889999998888899999999999886532 222222 136677777777543 2333445555444311
Q ss_pred --cccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhcc--ccc--cccHHHHHHHHHHHHHHHHHhhcc
Q 002596 552 --GFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGA--GFT--QFAQPVFQRCINIIQTQQLAKVDS 625 (902)
Q Consensus 552 --~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~--~f~--~~~~~i~~~l~~~l~~~~~~~~~~ 625 (902)
...| .| ...+|.+++.+...+.+... ..++..+.+++..-.. .+. .-++.++.+.++ ..
T Consensus 402 ~~r~~f---~~-TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~----~~------ 466 (708)
T PF05804_consen 402 EARSMF---AY-TDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQLMCEGNGLQSLMKRALK----TR------ 466 (708)
T ss_pred hhHHHH---hh-cchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh----cc------
Confidence 1111 12 23567777766554322211 1122222211110000 000 112222222211 00
Q ss_pred cccCCCCchhHHHHHhhhHHHHHHHHhh---hHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH
Q 002596 626 VAAGAQYDKEFVVCCLDLLSGLAEGLGS---GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL 702 (902)
Q Consensus 626 ~~~~~e~d~~~~~~al~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (902)
|+-+ +.++..++..-|. .|.+| +.+++..+...++++..-.++++++++... +......+
T Consensus 467 -------D~lL----lKlIRNiS~h~~~~k~~f~~~-----i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll 529 (708)
T PF05804_consen 467 -------DPLL----LKLIRNISQHDGPLKELFVDF-----IGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLL 529 (708)
T ss_pred -------cHHH----HHHHHHHHhcCchHHHHHHHH-----HHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHH
Confidence 2221 2334444433222 12222 333333323334566666666666666532 22344444
Q ss_pred H--HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 002596 703 S--DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIV--MTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (902)
Q Consensus 703 ~--~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (902)
. .++|.+.+.|.+.... .++.-.++-.+|.++.. +...+.+ ..+++.|+.++..... +..+.-..+-++.+
T Consensus 530 ~~~~llp~L~~~L~~g~~~--dDl~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ 604 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASE--DDLLLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQ 604 (708)
T ss_pred HhCCHHHHHHHHhCCCCCC--hHHHHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHH
Confidence 3 5888888888765432 25667777888887742 2333443 3677788888876543 45666667788888
Q ss_pred Hhhhc
Q 002596 779 LAWVC 783 (902)
Q Consensus 779 l~~~~ 783 (902)
++.+.
T Consensus 605 ll~h~ 609 (708)
T PF05804_consen 605 LLFHE 609 (708)
T ss_pred HHcCh
Confidence 88763
No 116
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.076 Score=60.34 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=110.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHH
Q 002596 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (902)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~ 268 (902)
+.+.+...|..|++-+-.-+....+ ++.+++.++......+.++++-+..-|..+++..|+... -.++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Confidence 6667788888888876665544322 344444555544456788888888888888887775432 3456677
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccC
Q 002596 269 QVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (902)
Q Consensus 269 ~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 348 (902)
+-++++++.+|..|+.+++.+-.. +. ++.+++.+.+.+...
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~----el----~~~~~~~ik~~l~d~------------------------------- 139 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK----EL----LGNIIDPIKKLLTDP------------------------------- 139 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH----HH----HHHHHHHHHHHccCC-------------------------------
Confidence 778899999999999998877332 23 333344433333311
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhh-hHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc
Q 002596 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (902)
Q Consensus 349 ~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 422 (902)
.-.+|+.|+-++..+-+.-++.+-.. ..-.+...+.+++ +.....|+.++..+-+.
T Consensus 140 ---------------~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~d---P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 140 ---------------HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSD---PIVIANALASLAEIDPE 196 (757)
T ss_pred ---------------cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCC---chHHHHHHHHHHHhchh
Confidence 01389999999987776554433333 4455566677888 99999998888877654
No 117
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.89 E-value=0.003 Score=66.81 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHhhCh--hhh--hhhHHHHH
Q 002596 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-----SAEVRKLVCAAFNLLIEVRP--SFL--EPHLRNLF 264 (902)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-----~~~vr~~~~~~l~~l~~~~~--~~~--~~~l~~i~ 264 (902)
..++..+++++..+...-.+.+.++++.++..+++++... ...+...+++.|..+++... ..+ .++++.|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 3678888899888887666777788888888888876432 12344556666666554321 122 45777776
Q ss_pred HHHH-hh----------------------hcCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhh
Q 002596 265 EYML-QV----------------------NKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (902)
Q Consensus 265 ~~~~-~~----------------------~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d 320 (902)
+.++ -. +... ....|..|++|+..+++. ..+.+.+.+...+..++.....
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~---- 263 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYAS---- 263 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhh----
Confidence 5332 11 1111 123577889999999876 4444444444444433321110
Q ss_pred hhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc------ch--hhhhHH
Q 002596 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EI--LPTLMP 392 (902)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~------~~--~~~l~~ 392 (902)
+...+|.-+.+|...++.++..... .+ .-.+..
T Consensus 264 ---------------------------------------~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 264 ---------------------------------------NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp ----------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred ---------------------------------------CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 0113588888999999998877621 10 111222
Q ss_pred HHHHh----hccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHH
Q 002596 393 VIQAK----LSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (902)
Q Consensus 393 ~l~~~----l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 457 (902)
++.+. +.+..+..+-.|-.|+..+..+....+ .+.+..++|.++..|.+++..|+.-|+.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 32222 221111126678888888887776554 357888999999999999999999998775
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.89 E-value=0.0096 Score=61.56 Aligned_cols=210 Identities=20% Similarity=0.157 Sum_probs=142.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCC
Q 002596 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (902)
Q Consensus 270 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~ 349 (902)
.+.+.....|..+++.+..+.........+......++..+...+.....+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~----------------------------- 101 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSE----------------------------- 101 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHH-----------------------------
Confidence 344556778999999888877665566677777777888887777643311
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHhhcC-----cchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch
Q 002596 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (902)
Q Consensus 350 ~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~-----~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~ 424 (902)
-+..|..++..++-.+| +.++..+.|.+.+.+.+.. .....|.+++.+||.++-.+.
T Consensus 102 -----------------E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~ 163 (309)
T PF05004_consen 102 -----------------EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGG 163 (309)
T ss_pred -----------------HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhc
Confidence 14568888888888876 2678888999998888653 226788888889987765433
Q ss_pred hh---hh---hhHHHHHHHHhhccCC--------CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC
Q 002596 425 KG---LY---PHLSEIVAFLIPLLDD--------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (902)
Q Consensus 425 ~~---~~---~~l~~i~~~l~~~l~d--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 490 (902)
.. +. ..+..++......... +++.+..+|+.+.+-+...++.. .........++.+...|..
T Consensus 164 ~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 164 SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLDS 239 (309)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcC
Confidence 22 22 3344344333322221 24678999988888888766532 2346678889999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHhcc---c-chHhHHHHHHHHHHHHh
Q 002596 491 TNKRVQEAACSAFATLEEEAAE---E-LAPRLEIILQHLMMAFG 530 (902)
Q Consensus 491 ~~~~v~~~a~~al~~l~~~~~~---~-~~p~l~~i~~~l~~~l~ 530 (902)
++..||.+|..+|+-+.+.... . ..+..+.++..+..+-.
T Consensus 240 ~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 240 DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 9999999999999999887632 2 23445556555554443
No 119
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.85 E-value=0.0034 Score=72.18 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=155.8
Q ss_pred chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHH
Q 002596 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (902)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (902)
++++.+-+.+...+.+.+ |+.|..|+..+..+.+... +....+...+...+-..+.|.+..|-..++.++..++..
T Consensus 249 di~~ki~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 567777778888888888 9999999999988887665 233345555566666678899999999999999999998
Q ss_pred HhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHH
Q 002596 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (902)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~a 543 (902)
+... ...|...+++.++..+.+....++..+..++..++.. -.+..+++.+...+.+.....+......
T Consensus 326 lr~~-----~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPL-----FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLL 394 (815)
T ss_pred cchh-----hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 8653 6788899999999999999999999888888887772 2355677777788887777777666666
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhcc-ccccccHHHHH
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQ 609 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~ 609 (902)
+.......+......+-+..+.|.+... .+|.+..+ ..+.++++.+.+.+|. .|..|+..+.+
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~---~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKH---INDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhh---ccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 6666666664332224566677766553 33455666 6789999999999997 45556665554
No 120
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.094 Score=59.14 Aligned_cols=384 Identities=15% Similarity=0.175 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC-----hhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHH
Q 002596 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (902)
Q Consensus 109 vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~-----~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (902)
-|+..+.++-..-...+.+-..-+...+-+.+.+++ ....++.+..+..++++.+... ..-+|
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~------------~~~i~ 507 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE------------STWIP 507 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch------------hHHHH
Confidence 455555555444443343344455666666666554 4566778888888888766531 34577
Q ss_pred HHHHHhcC-----CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhh
Q 002596 184 RLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (902)
Q Consensus 184 ~l~~~l~~-----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 258 (902)
.+++..-+ .+++.-..+...++.+..+..++- .+++..++.|++.+..+ +.-.++...+.++++.++..+.|
T Consensus 508 rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~p 584 (982)
T KOG2022|consen 508 RLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDP 584 (982)
T ss_pred HHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCch
Confidence 77777643 377888888888888877643321 12334477777777433 33455666799999999999999
Q ss_pred hHHHHHHHHHhhhcCC--CHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC-hhhhhhhhhhccCCCCCC
Q 002596 259 HLRNLFEYMLQVNKDT--DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA-DDDESLVEAEEDESLPDR 335 (902)
Q Consensus 259 ~l~~i~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~-~~d~~~~~~~~~~~~~~~ 335 (902)
|.+.++..+-..+... .+..+...+..++-+.+.- .++.+..|+-+++..++..+... ..+++..+
T Consensus 585 y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle~~l~~~i~~~e---------- 653 (982)
T KOG2022|consen 585 YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLEINLAPGIDDQE---------- 653 (982)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH----------
Confidence 9999998877664322 3345555555555554432 14455566777766665433322 11110000
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccccccHHHH-HHHHHHHHHhhc----------------------Cc-chhhhhH
Q 002596 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVF----------------------GD-EILPTLM 391 (902)
Q Consensus 336 ~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~-a~~~l~~l~~~~----------------------~~-~~~~~l~ 391 (902)
. ..|.+ -..++..++... +- .+...++
T Consensus 654 -~----------------------------~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i 704 (982)
T KOG2022|consen 654 -N----------------------------HLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAI 704 (982)
T ss_pred -H----------------------------HHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHH
Confidence 0 00000 001111111111 00 1233344
Q ss_pred HHHHHhhcc--CCCCchHHHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhh
Q 002596 392 PVIQAKLSA--SGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (902)
Q Consensus 392 ~~l~~~l~~--~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 468 (902)
|++.+.+.- ++ -..-++++..++.=.....+.+ .++++++.+++......+....-.-...++-.... .+.
T Consensus 705 ~~~~kv~s~~~~~---s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~--~~~- 778 (982)
T KOG2022|consen 705 PVFEKVLSMWLGL---SDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKST--VEQ- 778 (982)
T ss_pred HHHHHHHHHHhcc---hhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhc--ccc-
Confidence 544443331 12 3455566555544333333345 68889999998886554432111111111111110 000
Q ss_pred cCCcchhhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhcccchH---hH-HHHHHHHHHHHhccchhhHHHH
Q 002596 469 GHQNGREQFEKVLMGLLKRILD----TNKRVQEAACSAFATLEEEAAEELAP---RL-EIILQHLMMAFGKYQRRNLRIV 540 (902)
Q Consensus 469 ~~~~~~~~~~~il~~l~~~l~d----~~~~v~~~a~~al~~l~~~~~~~~~p---~l-~~i~~~l~~~l~~~~~~~~~~~ 540 (902)
..+....-+...+...+..+.+ +++.+-..-...+..+.+..+..+.+ .+ .-+.+.-+.++..+.....+++
T Consensus 779 ~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa 858 (982)
T KOG2022|consen 779 CKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAA 858 (982)
T ss_pred ccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 0011222333344444444433 23555555555666666665443332 33 3455577888888887777777
Q ss_pred HHHHHHHHHHhcc
Q 002596 541 YDAIGTLADAVGF 553 (902)
Q Consensus 541 ~~al~~l~~~~~~ 553 (902)
...+..++...+.
T Consensus 859 ~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 859 SQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHhhccc
Confidence 7777777665554
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.77 E-value=0.0063 Score=62.91 Aligned_cols=213 Identities=18% Similarity=0.164 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~--~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
+..-+...+..+.+.+...|+.+...+..++..- .+.+......++..+.+.+++...+....++.+++.++-.+|..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 3344556666777888899999998888877652 45566677889999999998877666667888899998887732
Q ss_pred CCchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhccc--ccCCC
Q 002596 555 LNQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSV--AAGAQ 631 (902)
Q Consensus 555 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~--~~~~e 631 (902)
......++.+.|.|...+.... ..... ..++.|++.++...|.+...+ ..++..+-.++.... .+.++. .....
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~-~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSI-LKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHh-cCcCCCcccccCC
Confidence 2223788999998888877542 22333 567888888877666543222 211122211111111 111221 11222
Q ss_pred CchhHHHHHhhhHHHHHHHHhh-hHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 002596 632 YDKEFVVCCLDLLSGLAEGLGS-GIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVC 694 (902)
Q Consensus 632 ~d~~~~~~al~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 694 (902)
++..+...|+..|+-++..++. .+..++.. .+|.+...+++++.+||.+|-..|+-+.+..
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999987765 24444443 6788888889999999998877777666544
No 122
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.02 Score=56.48 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=116.3
Q ss_pred HHHHHHHHHhhc-CcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC
Q 002596 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (902)
Q Consensus 113 ~a~~l~~i~~~~-~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 191 (902)
...++-.+++.. +...-|.++|.|...+..++..++..++..++.+.+++...--++.. ...-..++|.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil---lvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL---LVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH---HHhhhhHHHHHHHHHcC
Confidence 455666666654 55677999999999999999899999999999999998743111100 00115788999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccchhhHHhHHH-HHH--HHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhH-HHHHHHH
Q 002596 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQ--GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYM 267 (902)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-~l~--~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~i~~~~ 267 (902)
.+.+|..+|.+.+..+..+ |..+...|+. .+. .+.++....+.-+|..+++.+..+.+..|......- ..++..+
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 9999999999999998754 2222211110 000 111111122345677788888888877776543221 2455555
Q ss_pred HhhhcC-CCHHHHHHHHHHHHHhhccC
Q 002596 268 LQVNKD-TDDDVALEACEFWHSYFEAQ 293 (902)
Q Consensus 268 ~~~~~~-~~~~v~~~al~~l~~l~~~~ 293 (902)
..-++. .|.-++..+++....+++.+
T Consensus 219 eaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 555554 45557788899999888763
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.77 E-value=0.0072 Score=60.59 Aligned_cols=250 Identities=18% Similarity=0.184 Sum_probs=153.9
Q ss_pred HHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchh
Q 002596 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (902)
Q Consensus 135 ~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (902)
.|-..+.++++..|..|+.+|+.+++..+...-+ ...+..++..+..-+. +...-..+++.+..++.. +..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC
Confidence 4566788999999999999999999988764211 1233455555555553 333344447777777632 221
Q ss_pred hHHhHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHhhc
Q 002596 215 LFVSMDQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~v~~~al~~l~~l~~ 291 (902)
-......+++.+++...- -....|..+++.+..+.+.+...+...-+.++...++.+. +.|+.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222344556666654322 2346899999999999988877765555566766666655 4588877888888887766
Q ss_pred cCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHH
Q 002596 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (902)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a 371 (902)
.- . +.++.+.++..+..+...+ ++|.- ++. .....-.++.+-
T Consensus 154 ~~---~-~~~~~e~lFd~~~cYFPI~---------------------F~pp~--------~dp-----~~IT~edLk~~L 195 (262)
T PF14500_consen 154 EF---D-ISEFAEDLFDVFSCYFPIT---------------------FRPPP--------NDP-----YGITREDLKRAL 195 (262)
T ss_pred hc---c-cchhHHHHHHHhhheeeee---------------------eeCCC--------CCC-----CCCCHHHHHHHH
Confidence 51 2 2556666666654443321 00000 000 000000122222
Q ss_pred HHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHh
Q 002596 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLI 439 (902)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~i~~~l~ 439 (902)
..|+ ...+.+-+..+|.+.+.+.++. ...|.-++.+|...++..+ +.+.+|+..++..+-
T Consensus 196 ~~cl-----~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 196 RNCL-----SSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHh-----cCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 2222 1134567889999999999988 8899999999988777554 456788877777653
No 124
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.094 Score=55.25 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcC-CCHHHHHHHHHHHHHhhccCCch
Q 002596 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPH 296 (902)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~ 296 (902)
.+..++..+..-..|++..+|..++.+|...++..|+....|-..++..++..+-| .+.+|..+++..+..+.+.. ..
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-~~ 333 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-SN 333 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-hh
Confidence 45566677777778999999999999999999999999999999999888877655 46788888888887766542 12
Q ss_pred hhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHH
Q 002596 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (902)
Q Consensus 297 ~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~ 376 (902)
..+.+|+-.+.-.+.+ .|+ + +++ ..|.+|..+++
T Consensus 334 ~~l~~~~l~ialrlR~----------l~~---------------------------s---e~~------~~R~aa~~Lfg 367 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRT----------LFD---------------------------S---EDD------KMRAAAFVLFG 367 (533)
T ss_pred cchhhhchhHHHHHHH----------HHH---------------------------h---cCh------hhhhhHHHHHH
Confidence 2344444433222111 111 0 111 37999999999
Q ss_pred HHHhhcCcch----hhhhHHHHHH---hhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHH
Q 002596 377 VLSNVFGDEI----LPTLMPVIQA---KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLI 449 (902)
Q Consensus 377 ~l~~~~~~~~----~~~l~~~l~~---~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 449 (902)
.++...|... ...+...+.. .+++++ +..-.|+-..+.....+.. .+.+...++. .+ |..-.
T Consensus 368 ~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~---p~va~ACr~~~~~c~p~l~---rke~~~~~q~---~l-d~~~~- 436 (533)
T KOG2032|consen 368 ALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN---PYVARACRSELRTCYPNLV---RKELYHLFQE---SL-DTDMA- 436 (533)
T ss_pred HHHHHcCCCchhhhHHHHHhccccceeeeCCCC---hHHHHHHHHHHHhcCchhH---HHHHHHHHhh---hh-HHhHH-
Confidence 9999986522 2222212222 234444 5443333222222222211 0111111221 11 11111
Q ss_pred HHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHH
Q 002596 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMM 527 (902)
Q Consensus 450 r~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~ 527 (902)
|..++ ..+++..+.. .......-........++..-+.||+++..--.++..+......++. ..+...+..
T Consensus 437 ~~q~F--yn~~c~~L~~-----i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~ 509 (533)
T KOG2032|consen 437 RFQAF--YNQWCIQLNH-----IHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLST 509 (533)
T ss_pred HHHHH--HHHHHHHHhh-----hCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHH
Confidence 22211 1111111111 11222222222223334444568888888777777777655555543 345555555
Q ss_pred HHhccchhhHHHHHHHHHHHH
Q 002596 528 AFGKYQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 528 ~l~~~~~~~~~~~~~al~~l~ 548 (902)
...++-.+++..+..|++.+.
T Consensus 510 l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 510 LWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HccCCCchhHHHHHHHhhhHh
Confidence 555666677777778777654
No 125
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.065 Score=59.96 Aligned_cols=157 Identities=14% Similarity=0.204 Sum_probs=107.1
Q ss_pred hHHHHHHHHhhccCCC-ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 002596 430 HLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLE 507 (902)
Q Consensus 430 ~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~~v~~~a~~al~~l~ 507 (902)
-++.++|.++..|++. ++.+--.||.|+..+++.++... ..-.-...+|.++..|.. .-..|.+.+..||..+.
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~----a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS----AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh----heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3567899999999875 57899999999999999987531 111112477888777664 44678899999999887
Q ss_pred HHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHH
Q 002596 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (902)
Q Consensus 508 ~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~ 587 (902)
..-+..+..- ..+ ...+..++-.....++.++....++++.+..+-. .|+-..+|.|...++.. +++-+..+.-
T Consensus 284 R~H~~AiL~A-G~l-~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f--~~v~ealPlL~~lLs~~--D~k~ies~~i 357 (1051)
T KOG0168|consen 284 RRHPKAILQA-GAL-SAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF--HFVMEALPLLTPLLSYQ--DKKPIESVCI 357 (1051)
T ss_pred hhccHHHHhc-ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHHHhhc--cchhHHHHHH
Confidence 7543322110 111 1223344444456777888888888888877655 78888899888888874 2333467778
Q ss_pred HHHHHHHHh
Q 002596 588 CFTSIAQAL 596 (902)
Q Consensus 588 ~l~~i~~~~ 596 (902)
|+..++..+
T Consensus 358 c~~ri~d~f 366 (1051)
T KOG0168|consen 358 CLTRIADGF 366 (1051)
T ss_pred HHHHHHHhc
Confidence 888888654
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.69 E-value=0.00026 Score=58.30 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=66.4
Q ss_pred HHHHhhcc-CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 002596 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (902)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~ 513 (902)
+|.+++.+ +|+++.+|..+++++|++.. ..+++.+...+.|+++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 46677777 89999999999999996532 266888888899999999999999999762
Q ss_pred chHhHHHHHHHHHHHHhccchh-hHHHHHHHHH
Q 002596 514 LAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIG 545 (902)
Q Consensus 514 ~~p~l~~i~~~l~~~l~~~~~~-~~~~~~~al~ 545 (902)
-+..++.|.+.+.+.+.. ++..+..+|+
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 246777788888776544 4556666664
No 127
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.68 E-value=0.014 Score=62.58 Aligned_cols=242 Identities=15% Similarity=0.040 Sum_probs=154.4
Q ss_pred HHHHHHhhhhh-cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCC
Q 002596 93 YIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (902)
Q Consensus 93 ~i~~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (902)
.....++..|. +++..++..++..+. .. .-+..+..|...+.++++.+|.++..+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQ----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---cc----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------
Confidence 34567788884 567777765432222 11 112347888889999999999999999964321
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002596 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 251 (902)
....+.|...+.+.++.+|..++.++...... -.+.+..+++|+++.||..++.++..+-..
T Consensus 116 -------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred -------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 56778899999999999999999777763211 123455566799999999999999887532
Q ss_pred ChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCC
Q 002596 252 RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (902)
Q Consensus 252 ~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~ 331 (902)
+ .++.+...+.+.++.||..|+..+..+... .. +..+......
T Consensus 178 --~--------a~~~L~~al~d~~~~VR~aA~~al~~lG~~----~A--------~~~l~~~~~~--------------- 220 (410)
T TIGR02270 178 --L--------SESTLRLYLRDSDPEVRFAALEAGLLAGSR----LA--------WGVCRRFQVL--------------- 220 (410)
T ss_pred --c--------chHHHHHHHcCCCHHHHHHHHHHHHHcCCH----hH--------HHHHHHHHhc---------------
Confidence 1 122233457889999999999887655321 11 1111110000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHH
Q 002596 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREA 411 (902)
Q Consensus 332 ~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~ 411 (902)
.++..+..+...+... |.. ..++.+...+.++ ..|.+
T Consensus 221 -------------------------------~g~~~~~~l~~~lal~----~~~---~a~~~L~~ll~d~-----~vr~~ 257 (410)
T TIGR02270 221 -------------------------------EGGPHRQRLLVLLAVA----GGP---DAQAWLRELLQAA-----ATRRE 257 (410)
T ss_pred -------------------------------cCccHHHHHHHHHHhC----Cch---hHHHHHHHHhcCh-----hhHHH
Confidence 0011222222233221 322 4556666666653 37999
Q ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHH
Q 002596 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (902)
Q Consensus 412 a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (902)
++.++|.+... ..++.++..+.|+. +|..|-++++++..
T Consensus 258 a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 258 ALRAVGLVGDV----------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHcCCc----------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 99999987642 24677777777654 99999999988765
No 128
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.68 E-value=0.42 Score=61.77 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=124.4
Q ss_pred HHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhh
Q 002596 648 AEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANN 727 (902)
Q Consensus 648 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~ 727 (902)
...+++.|.+...++..+..+...+.+....++..+...+|.++...+..+.|++..........+..+. ...++..
T Consensus 550 ~~~l~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg---~~r~~~~ 626 (2341)
T KOG0891|consen 550 LSSLNERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG---MARTKEE 626 (2341)
T ss_pred HhhhccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc---hHHhHHH
Confidence 3344466666666667778888888888899999999999999998888888888877776666655542 2233344
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCC
Q 002596 728 ACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRD 807 (902)
Q Consensus 728 a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d 807 (902)
.+.-+..++.....-+.+|+..++..+++.+.+++ ..+..++..++|.|.......+..+++..++.+.+.+.....
T Consensus 627 ~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~---s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~ 703 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLISPYVGPILLVLLPKLQDPS---SGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSS 703 (2341)
T ss_pred HHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc---hhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhh
Confidence 44445555554455578999999999999998886 456667778889999888766655677777777777776555
Q ss_pred cHHHHHHHHHHHHHHHc
Q 002596 808 DTEKEDAFRGLCAMVKA 824 (902)
Q Consensus 808 ~~e~~~~~~~l~~li~~ 824 (902)
...+..+.+.+..+...
T Consensus 704 ~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 704 LGKRLAALKALGQLESS 720 (2341)
T ss_pred hhchhHHHHHhhhhhcc
Confidence 66677788888777765
No 129
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.039 Score=61.62 Aligned_cols=384 Identities=13% Similarity=0.139 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhhcCC-CHHHHHHHHHHHHHhhccCCchhhHHhhhh-hhHHHHHhhccCChhhhhhhhhhccCCCCCCCC
Q 002596 260 LRNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (902)
Q Consensus 260 l~~i~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~l~-~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~ 337 (902)
++.+++.++..++++ +.++...||.++..+++. .+.-..-.+. ..+|+++..+...+ -+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~Ie----yi------------- 269 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTIE----YI------------- 269 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhhh----hh-------------
Confidence 456777777777654 678999999999999887 3322222222 35677665554211 01
Q ss_pred CCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhh-hHHHHHHhhccCCCCchHHHHHHHHHH
Q 002596 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT-LMPVIQAKLSASGDEAWKDREAAVLAL 416 (902)
Q Consensus 338 ~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~r~~a~~~l 416 (902)
.+-..+.++|..|++.-|..++.. -+..+..++.=-. -.....|+...
T Consensus 270 ----------------------------DvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS---i~aQR~Alaia 318 (1051)
T KOG0168|consen 270 ----------------------------DVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS---IHAQRVALAIA 318 (1051)
T ss_pred ----------------------------HHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 145568888888888877655421 1222223332111 23344454444
Q ss_pred HHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcch-hhHHHHHHHHHHHhcCC----
Q 002596 417 GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR-EQFEKVLMGLLKRILDT---- 491 (902)
Q Consensus 417 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~l~d~---- 491 (902)
..++......-..++-+.+|.+.+.|+..+..+-..+|.|+.++++.+... +.... -....++....+.+.-.
T Consensus 319 aN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~--~~kLdql~s~dLi~~~~qLlsvt~t~L 396 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG--PDKLDQLCSHDLITNIQQLLSVTPTIL 396 (1051)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC--hHHHHHHhchhHHHHHHHHHhcCcccc
Confidence 444444443334567788999999999888888999999999999877531 10111 11233444444444322
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchH-hHHHHHHHHHHHHhccch-----------hhHHHHHHHHHHHHHHhcccCCchh
Q 002596 492 NKRVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFGKYQR-----------RNLRIVYDAIGTLADAVGFELNQPV 559 (902)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~p-~l~~i~~~l~~~l~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~~ 559 (902)
+..+.......+..++..++..+.. +...|...+...|..+.. +.-...++.+..++.-+.. .
T Consensus 397 s~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~-----~ 471 (1051)
T KOG0168|consen 397 SNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPC-----L 471 (1051)
T ss_pred cccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecC-----C
Confidence 1223333344444444433322222 334566666666655432 1111234444433332211 1
Q ss_pred hhhhhh------------------H-----------------HHHHHHhcCCCCCcchhhHHHHHHHHHHHhc---cccc
Q 002596 560 YLDILM------------------P-----------------PLIAKWQQLPNSDKDLFPLLECFTSIAQALG---AGFT 601 (902)
Q Consensus 560 ~~~~ll------------------~-----------------~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g---~~f~ 601 (902)
+.+.++ + .++...++.....+.....+. ...=...++ .-+.
T Consensus 472 p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~-~~~r~~~l~nqpel~q 550 (1051)
T KOG0168|consen 472 PVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLN-GSAREGLLKNQPELLQ 550 (1051)
T ss_pred cccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcC-CchhhhhhhcCHHHHH
Confidence 111111 0 011100000000000000000 000000111 1234
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhh-hHHhhhccchHHHHHHHHhcCCChHHH
Q 002596 602 QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS-GIESLVAQSNLRDMLLQCCMDDASDVR 680 (902)
Q Consensus 602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vr 680 (902)
.|...++|.++++..+.. +.+++-.++.++..++-.... .+..++.+..+-..+.-.+..++..|.
T Consensus 551 ~F~~~llpVLveVYsSsA-------------~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vl 617 (1051)
T KOG0168|consen 551 SFGKDLLPVLVEVYSSSA-------------NPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVL 617 (1051)
T ss_pred HHHHHHHHHHHHHHhccC-------------CchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeE
Confidence 455556666666555422 556777777777666554332 233333332334445555666777777
Q ss_pred HHHHHHHHHHHhhchHhhHHhHH--HHHHHHHHhcC
Q 002596 681 QSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLN 714 (902)
Q Consensus 681 ~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~ 714 (902)
--|+.+..-+++.+++.|.+++. .++..+.+...
T Consensus 618 VgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 618 VGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred eehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 78889888889999999988874 56666555544
No 130
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0065 Score=67.69 Aligned_cols=218 Identities=17% Similarity=0.125 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc
Q 002596 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (902)
Q Consensus 63 ~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~ 142 (902)
..+.+|-.|...|++.+.++ ..-+-.....+....+..|.+.++.|--.+...++.++..++.+-.|++..+-.+.-..
T Consensus 739 ~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred CcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 34457888999999888866 33334445567778888999999998888888888898887666667766654444333
Q ss_pred CChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHH
Q 002596 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (902)
Q Consensus 143 ~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 222 (902)
..++.|...-.++.+++...++... .+...++..++.+.++++...|..++..++.+.....-...+.+.++
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~--------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev 889 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVF--------KYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEV 889 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3344444444777777776665432 34467888889999999999999999999998866543344455555
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhhhhhH----HHHHHHHHhhhc-CCCHHHHHHHHHHHHHh
Q 002596 223 LQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHL----RNLFEYMLQVNK-DTDDDVALEACEFWHSY 289 (902)
Q Consensus 223 l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l----~~i~~~~~~~~~-~~~~~v~~~al~~l~~l 289 (902)
+..+.+.. .|.+..+|++|...+..+.......+.|.+ -+....+..... +.++.++..|+.++..+
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 55565544 467788999999999999887776666633 344455555444 44556777776665433
No 131
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.63 E-value=0.016 Score=62.14 Aligned_cols=243 Identities=16% Similarity=0.020 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhc-cCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002596 130 LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 130 ~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (902)
+..++.+...+. ++++.++..+..++... + -...+..++..+.+.++.||..+.++|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----------~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----------E--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----------C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 445566666663 55666766555544211 0 0234788999999999999999999998643
Q ss_pred cccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 002596 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (902)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~ 288 (902)
. +...+.|...+.++++.+|..++..+..... + -.+.+...+++.+..++..|+..+..
T Consensus 115 ~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---~--------~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 115 G----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---D--------PGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred c----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---C--------hHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2 1224456666778889999888866655211 1 12344445678999999999999887
Q ss_pred hhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHH
Q 002596 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (902)
Q Consensus 289 l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r 368 (902)
+.... ..+.+... +. + .+ -.+|
T Consensus 174 l~~~~--------a~~~L~~a----l~-------------------------------------d---~~------~~VR 195 (410)
T TIGR02270 174 LPRRL--------SESTLRLY----LR-------------------------------------D---SD------PEVR 195 (410)
T ss_pred hcccc--------chHHHHHH----Hc-------------------------------------C---CC------HHHH
Confidence 75431 11111111 11 0 00 1389
Q ss_pred HHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChH
Q 002596 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (902)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 448 (902)
..|...+..+ |. +..+..+........ +..+..+..+++.. + -+..++.+...++|+.
T Consensus 196 ~aA~~al~~l----G~---~~A~~~l~~~~~~~g---~~~~~~l~~~lal~--~--------~~~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 196 FAALEAGLLA----GS---RLAWGVCRRFQVLEG---GPHRQRLLVLLAVA--G--------GPDAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHHHHHHHc----CC---HhHHHHHHHHHhccC---ccHHHHHHHHHHhC--C--------chhHHHHHHHHhcChh--
Confidence 9999888544 32 122333444334444 44444444444332 1 1256777888888865
Q ss_pred HHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 449 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
+|..+++++|++.. ...++.+++.+.|+ .++..|..++..+..
T Consensus 254 vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 254 TRREALRAVGLVGD---------------VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHHHHcCC---------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 99999999998754 14567777778774 388888888887754
No 132
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.61 E-value=0.0019 Score=64.21 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=117.9
Q ss_pred HHHHHHhhcc-CCCCchHHHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002596 391 MPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (902)
Q Consensus 391 ~~~l~~~l~~-~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (902)
+..+..+|.. .+ +..++.+..+++..+..... ...+. ..++.+...+++|++.+|..|++++..++......
T Consensus 14 l~~Ll~lL~~t~d---p~i~e~al~al~n~aaf~~n--q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 14 LQKLLCLLESTED---PFIQEKALIALGNSAAFPFN--QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHhcCCC---hHHHHHHHHHHHhhccChhH--HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 3445555664 45 89999999999987653321 12222 26788899999999999999999999987654321
Q ss_pred hcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 002596 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (902)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l 547 (902)
.....|+..+...++.. .-+..+|.++..+|.++.-. +.....+...++.++.++...+...+..++.++..+
T Consensus 89 ---~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 89 ---EQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred ---HHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 11333444444443321 23678999999999988532 222223344556667788877777777888888877
Q ss_pred HHHhcccCCchhh-hhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHHHhccc
Q 002596 548 ADAVGFELNQPVY-LDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQALGAG 599 (902)
Q Consensus 548 ~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~-~~~~l~~l~~i~~~~g~~ 599 (902)
+..-.. . ... -.+.++.++..+.... +++ +..++..+..|...++++
T Consensus 162 S~np~~--~-~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SENPDM--T-RELLSAQVLSSFLSLFNSSE--SKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCHHH--H-HHHHhccchhHHHHHHccCC--ccHHHHHHHHHHHHHHHhhCcc
Confidence 653110 0 011 1234445555555432 233 366777777776666553
No 133
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.61 E-value=0.014 Score=63.99 Aligned_cols=159 Identities=13% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCc
Q 002596 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (902)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~ 176 (902)
.++.+.. .+...++.+|+.|...++.. |+.-.+-+..++.++.+++..+|..|+..|-.+|++-++
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~------------ 92 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE------------ 92 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T------------
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH------------
Confidence 3444444 46889999999999988764 555567889999999999999999999999888886443
Q ss_pred chhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-hhChhh
Q 002596 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI-EVRPSF 255 (902)
Q Consensus 177 ~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~~~ 255 (902)
.+..+...|.|+|++.++..+..+=++|.++....|.... ..++..+... ...++.+|..+++.+..-+ ...++.
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL---~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL---TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH---HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 3578889999999999988888888888888876554321 1112222211 1346779999888885433 333333
Q ss_pred hh--hhHH-HHHHHHHhhhcC
Q 002596 256 LE--PHLR-NLFEYMLQVNKD 273 (902)
Q Consensus 256 ~~--~~l~-~i~~~~~~~~~~ 273 (902)
+. .... -++..+...+.|
T Consensus 169 ~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 169 LTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp S---HHHHHHHHHHHHHHCTT
T ss_pred hhchHHHHHHHHHHHHHHHHh
Confidence 33 1222 233344445554
No 134
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.35 Score=58.77 Aligned_cols=341 Identities=13% Similarity=0.094 Sum_probs=174.5
Q ss_pred HHHHHHhh--hhhcCChHHHHHHHHHHHHHHhhcCc-C-----chHHHHHHHHHHhc---c-CChhhhhHHHHHHHHHHh
Q 002596 93 YIKSELLP--CLGAADRHIRSTVGTIVSVVVQLGGI-A-----GWLELLQALVTCLD---S-NDINHMEGAMDALSKICE 160 (902)
Q Consensus 93 ~i~~~ll~--~l~~~~~~vr~~~a~~l~~i~~~~~~-~-----~w~~ll~~L~~~l~---~-~~~~~r~~al~~L~~l~~ 160 (902)
.++..|++ .|.+++..||...|-|++.|.|..-| . ...+++..+...+. + .+|... .-..+|-.+..
T Consensus 48 pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~-r~~~lletl~~ 126 (1266)
T KOG1525|consen 48 PLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFK-RYFYLLETLAK 126 (1266)
T ss_pred HHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchh-hHHHHHHHHHH
Confidence 34445554 56789999999999999999998622 1 33444444444332 2 233211 11222222222
Q ss_pred hchhc--cc-cCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHH
Q 002596 161 DIPQV--LD-SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (902)
Q Consensus 161 ~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v 237 (902)
.. .. +. .+. +..+..++..++..+..+.+.--..-+..+..++..... .. ..++..++.-+..+.+..
T Consensus 127 ~k-~~l~~~l~d~----~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~-v~---~e~L~~ll~~lv~~~~~~ 197 (1266)
T KOG1525|consen 127 VK-FCLLMLLEDC----QELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT-VQ---SELLDVLLENLVKPGRDT 197 (1266)
T ss_pred hH-HHheeeccch----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc-ch---HHHHHHHHHHhccCCCCc
Confidence 22 11 11 110 133455666666666665443333334444444432211 11 123444444333333445
Q ss_pred HHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC
Q 002596 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (902)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 317 (902)
...+...=..+++..++.+.+.+...+...+..-...--..+...-+.+..+-. .....+-.++|.|...+.-
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~------~~p~ll~~vip~l~~eL~s- 270 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWR------IAPQLLLAVIPQLEFELLS- 270 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH------hhHHHHHHHHHHHHHHHhc-
Confidence 555555555555555555555444444333322111111122222233332222 2223344555555443331
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcc---hhhhhHHHH
Q 002596 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE---ILPTLMPVI 394 (902)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~~l 394 (902)
+++ ..|..|...++.+....+.. -.+.++..+
T Consensus 271 ---------------------------------------e~~------~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f 305 (1266)
T KOG1525|consen 271 ---------------------------------------EQE------EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAF 305 (1266)
T ss_pred ---------------------------------------chH------HHHHHHHHHHHHHHhcchhhhcccchHHHHHH
Confidence 111 27999999999888776543 345666666
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcch
Q 002596 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (902)
Q Consensus 395 ~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 474 (902)
...+.+.. ..+|.+++.....+.-..+. ........+.....|.++.+|.+...+++..... . ...
T Consensus 306 l~r~~D~~---~~vR~~~v~~~~~~l~~~~~----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~--~-----~~l 371 (1266)
T KOG1525|consen 306 LGRFNDIS---VEVRMECVESIKQCLLNNPS----IAKASTILLALRERDLDEDVRVRTQVVIVACDVM--K-----FKL 371 (1266)
T ss_pred HHHhccCC---hhhhhhHHHHhHHHHhcCch----hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh--H-----hhh
Confidence 77777877 88999888776655433221 1122222222233455565555543333322111 0 122
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
.+...++..+.+.+.|...+||..|...|..+.++
T Consensus 372 ~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 372 VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33344888888899999999999999999999885
No 135
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.57 E-value=0.023 Score=57.02 Aligned_cols=250 Identities=18% Similarity=0.142 Sum_probs=140.5
Q ss_pred HhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHh
Q 002596 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (902)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~ 517 (902)
+-+.|.++++.+|..|..+|+.+...++.. .-..+...-++..+...+.|. ..+.. +..++..+.. .+..-...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~-~~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVK-MKNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHh-CcCCChhh
Confidence 345678999999999999999998887642 123455677777778888663 34444 3777777773 22222223
Q ss_pred HHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcc-hhhHHHHHHHHHH
Q 002596 518 LEIILQHLMMAFG--KYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKD-LFPLLECFTSIAQ 594 (902)
Q Consensus 518 l~~i~~~l~~~l~--~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~-~~~~l~~l~~i~~ 594 (902)
...++..+.+-.. ......+..+++.+..+......... ..-+.++..+++..... .||. +.-+++.+..+..
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~--~~~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ--SMGDDFVYGFIQLIDGE--KDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH--hchhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Confidence 4455555554332 22335566778888777765443321 22233444444444432 3443 3444555555555
Q ss_pred HhccccccccHHHHHHHHHHHHHHHHHhhcc-cccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc
Q 002596 595 ALGAGFTQFAQPVFQRCINIIQTQQLAKVDS-VAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM 673 (902)
Q Consensus 595 ~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~-~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 673 (902)
.+. +.++.+.++..+.-.+=-. -+..+ |.-+.- ..++.. .+-..+.. .+.+. +..+|++..-+.
T Consensus 154 ~~~--~~~~~e~lFd~~~cYFPI~--F~pp~~dp~~IT-~edLk~-------~L~~cl~s--~~~fa-~~~~p~LleKL~ 218 (262)
T PF14500_consen 154 EFD--ISEFAEDLFDVFSCYFPIT--FRPPPNDPYGIT-REDLKR-------ALRNCLSS--TPLFA-PFAFPLLLEKLD 218 (262)
T ss_pred hcc--cchhHHHHHHHhhheeeee--eeCCCCCCCCCC-HHHHHH-------HHHHHhcC--cHhhH-HHHHHHHHHHHc
Confidence 443 3455555555432111000 00001 100000 012221 22222211 11121 247889999999
Q ss_pred CCChHHHHHHHHHHHHHHhhch-HhhHHhHHHHHHHHHHh
Q 002596 674 DDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQ 712 (902)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~ 712 (902)
+..+.++..++.++..++..++ ..+.||+..++..+...
T Consensus 219 s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998887 46889999998877654
No 136
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.56 E-value=0.18 Score=55.54 Aligned_cols=153 Identities=13% Similarity=0.151 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~ 141 (902)
..+...+++|+.++- +.|...+. ..+...+.++.+..|.+..||..+...+-.+++.. ++..+.+...|.++++
T Consensus 33 kg~~k~K~Laaq~I~----kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIP----KFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHHHH----HHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHH----HHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHh
Confidence 357889999996664 55554433 34445578889999999999999988888888764 5566889999999999
Q ss_pred cCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHH---h
Q 002596 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV---S 218 (902)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~---~ 218 (902)
++++..+..+=.+|..+...-+.. .+..++..+... ...+..+|..+++.+..-+..++..+.. .
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~-----------tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG-----------TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 998876666666666665532221 122233222211 2457789999999997766555443322 2
Q ss_pred HHH-HHHHHHHhhCC
Q 002596 219 MDQ-YLQGLFLLSND 232 (902)
Q Consensus 219 ~~~-~l~~l~~~~~~ 232 (902)
+.. ++..+...+.|
T Consensus 175 ~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 333 34455556655
No 137
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.53 E-value=0.28 Score=55.86 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002596 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (902)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~ 756 (902)
+-+|.-++-.++.+|-..+... ...||.+.+.|+... ...+|+|.+.++|.++.+...-...|++.|- .
T Consensus 945 ~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~---~~aiRnNiV~am~D~C~~YTam~d~YiP~I~----~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNT---AHAIRNNIVLAMGDICSSYTAMTDRYIPMIA----A 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhh---HHHHhcceeeeehhhHHHHHHHHHHhhHHHH----H
Confidence 3466667777788777655433 346677777776653 5789999999999999887654455655544 6
Q ss_pred hhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHc-CchhhhhhHHH
Q 002596 757 ILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA-NPSGALSSLVF 835 (902)
Q Consensus 757 ~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~-~p~~~~~~l~~ 835 (902)
.|.++. .-+|..++..++||+...-- ..-..++-.++..|-+ ...+.+..+=-++..+++. +|.....|+..
T Consensus 1014 ~L~Dp~---~iVRrqt~ilL~rLLq~~~v---Kw~G~Lf~Rf~l~l~D-~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1014 SLCDPS---VIVRRQTIILLARLLQFGIV---KWNGELFIRFMLALLD-ANEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HhcCch---HHHHHHHHHHHHHHHhhhhh---hcchhhHHHHHHHHcc-cCHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 667775 78899999999999975321 1122233333333332 2233344555566777766 66655566666
Q ss_pred HhhHhhc
Q 002596 836 MCRAIAS 842 (902)
Q Consensus 836 i~~~i~~ 842 (902)
.+.++-.
T Consensus 1087 ~i~~ln~ 1093 (1529)
T KOG0413|consen 1087 YIIALNQ 1093 (1529)
T ss_pred HHHHHHH
Confidence 6666533
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.52 E-value=0.022 Score=60.74 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCC
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 445 (902)
.+|..|...++.+.... ..+.+.+...+.+.+ |.+|..++.++|.+.... ..+.+...+.+.
T Consensus 195 ~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~---~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~ 256 (335)
T COG1413 195 DVRRAAASALGQLGSEN-----VEAADLLVKALSDES---LEVRKAALLALGEIGDEE----------AVDALAKALEDE 256 (335)
T ss_pred HHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCC---HHHHHHHHHHhcccCcch----------hHHHHHHHHhcc
Confidence 47888888887766544 345566777777777 999999998888765432 245566666777
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
++.++..+....+.+- .......+...+.|....++..+..++..+..
T Consensus 257 ~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 257 DVILALLAAAALGALD---------------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred chHHHHHHHHHhcccC---------------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 7777777655554110 11223344455667778888888877776654
No 139
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0026 Score=62.45 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=114.9
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcC
Q 002596 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (902)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 470 (902)
+.-....+.+.+ |..+-.++..+..+++.-.+.+.+.+..++..+.+.++++...|-.+||.+++.+...+...
T Consensus 90 l~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--- 163 (334)
T ss_pred HHHHHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333445566777 99999999999999999889999999999999999999999999999999999999887654
Q ss_pred CcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 002596 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (902)
Q Consensus 471 ~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~ 550 (902)
....++..+..|+..-.+.+.-|++.|-.+|..++.+..+. .+++.|...++++...++..+.-+.......
T Consensus 164 --i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 164 --IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred --HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 34466777777777767778999999999999998876432 4666667777777766666555444444333
Q ss_pred h
Q 002596 551 V 551 (902)
Q Consensus 551 ~ 551 (902)
+
T Consensus 236 l 236 (334)
T KOG2933|consen 236 L 236 (334)
T ss_pred c
Confidence 3
No 140
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.50 E-value=0.083 Score=56.38 Aligned_cols=185 Identities=18% Similarity=0.176 Sum_probs=123.8
Q ss_pred ChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC
Q 002596 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (902)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~ 127 (902)
.....+...+. +.+..+|..|+..+... .-......+...+.+.++.+|..++.+++.+
T Consensus 43 ~~~~~~~~~l~---~~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~------- 101 (335)
T COG1413 43 EAADELLKLLE---DEDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL------- 101 (335)
T ss_pred hhHHHHHHHHc---CCCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------
Confidence 35566666665 34889999998775311 1123445677888899999999998866653
Q ss_pred chHHHHHHHHHHhc-cCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCC------------H
Q 002596 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH------------T 194 (902)
Q Consensus 128 ~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~------------~ 194 (902)
.-++.++.+...+. +++..+|..+..+|+.+-. ..-+..++..+++.. .
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGD------------------ERALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------------hhhhHHHHHHhccchhhhhhhhccchHH
Confidence 23566677777777 6888999999999976543 222455666666644 2
Q ss_pred HHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCC
Q 002596 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (902)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~ 274 (902)
.+|..+...+..+-.. ...+.+...+.+.+..+|..+...+..+.... ..+...+...+.+.
T Consensus 164 ~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 5677776666665421 12344555666777789999999998877543 33445556667788
Q ss_pred CHHHHHHHHHHHHHh
Q 002596 275 DDDVALEACEFWHSY 289 (902)
Q Consensus 275 ~~~v~~~al~~l~~l 289 (902)
+..+|..++..+..+
T Consensus 226 ~~~vr~~~~~~l~~~ 240 (335)
T COG1413 226 SLEVRKAALLALGEI 240 (335)
T ss_pred CHHHHHHHHHHhccc
Confidence 888888877766544
No 141
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.29 Score=54.35 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHH
Q 002596 725 ANNACWAIGELAVKARQE--------ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQ 796 (902)
Q Consensus 725 ~~~a~~alg~l~~~~~~~--------~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~ 796 (902)
+.+++-|+|.++...... .......+++.+...+.... ..+.+|...-.+++|++-.....+.|+++..+.
T Consensus 663 c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~-k~E~iRsavrft~hRmI~~lg~~vlPfipklie 741 (980)
T KOG2021|consen 663 CHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFN-KFENIRSAVRFTFHRMIPILGNKVLPFIPKLIE 741 (980)
T ss_pred HHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHHhcchhhhcchHHHHH
Confidence 356677888887644321 12234556666667776654 367899999999999999999999999999888
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhh--------hhHHHHhhHhhc
Q 002596 797 PWCIALSMIRDDTEKEDAFRGLCAMVKANPSGAL--------SSLVFMCRAIAS 842 (902)
Q Consensus 797 ~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~--------~~l~~i~~~i~~ 842 (902)
..++. .|..|-......+..++......+. +-+.+|+.++.+
T Consensus 742 ~lL~s----~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r 791 (980)
T KOG2021|consen 742 LLLSS----TDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIER 791 (980)
T ss_pred HHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88764 3333555566667777776554332 344455555544
No 142
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.46 E-value=0.0016 Score=64.75 Aligned_cols=190 Identities=14% Similarity=0.189 Sum_probs=113.9
Q ss_pred HHHHhhccC-CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-
Q 002596 435 VAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA- 510 (902)
Q Consensus 435 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~- 510 (902)
++.++..|+ ..+|.++..+..+++..+.+-. ....+ ...++.+...+.++++.+|..|+.++.++....
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-------nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF-------NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh-------HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 455666666 4679999999999999765322 12222 246778888899999999999999999887654
Q ss_pred -cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHH
Q 002596 511 -AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECF 589 (902)
Q Consensus 511 -~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l 589 (902)
...+..|++.++..+... ..+...+...+.++..+... .... ..+...+|.++..|...+ ......++.++
T Consensus 87 n~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~--~~~~--~~l~~~i~~ll~LL~~G~--~~~k~~vLk~L 158 (254)
T PF04826_consen 87 NQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVT--NDYH--HMLANYIPDLLSLLSSGS--EKTKVQVLKVL 158 (254)
T ss_pred hHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCC--cchh--hhHHhhHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 344666777777655442 22445666777777776432 2221 344555667777666532 22224566666
Q ss_pred HHHHHHhccccccc--cHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhh
Q 002596 590 TSIAQALGAGFTQF--AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSG 654 (902)
Q Consensus 590 ~~i~~~~g~~f~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~ 654 (902)
..++..-- ..+. -.++...++.+++.. .+++....++..+..+...+++.
T Consensus 159 ~nLS~np~--~~~~Ll~~q~~~~~~~Lf~~~-------------~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 159 VNLSENPD--MTRELLSAQVLSSFLSLFNSS-------------ESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHhccCHH--HHHHHHhccchhHHHHHHccC-------------CccHHHHHHHHHHHHHHHhhCcc
Confidence 55543211 1000 112233344444421 14566667777777777777665
No 143
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.039 Score=54.45 Aligned_cols=257 Identities=16% Similarity=0.202 Sum_probs=137.2
Q ss_pred HHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-ccchHhH----HHHHHHH
Q 002596 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRL----EIILQHL 525 (902)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~-~~~~p~l----~~i~~~l 525 (902)
.-+..|+.++.+... ......+.++.+-.++..++..|+.-+|+.++.+++++. ..+...+ ..|++.+
T Consensus 61 tlcVscLERLfkake-------gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKE-------GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred hhHHHHHHHHHhhcc-------chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 336667777766543 233456677888888888889999999999999999984 3333322 4688888
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHH-----HHHHHhcCCCCCcchhhHHHHHHHHHHHhcccc
Q 002596 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPP-----LIAKWQQLPNSDKDLFPLLECFTSIAQALGAGF 600 (902)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~-----l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f 600 (902)
+.++...+..+...+.+++..++..- .-++.+.|. +...--....++-....+++.+-.+... .+..
T Consensus 134 ldcIggeddeVAkAAiesikrialfp-------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-Spes 205 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIALFP-------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPES 205 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhcH-------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHH
Confidence 88888888888888888888776421 112222211 0000000000010001222222222111 1111
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc--CCChH
Q 002596 601 TQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM--DDASD 678 (902)
Q Consensus 601 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~ 678 (902)
..|..+ ..++..+.... .+.+ |.-++..++++...++.. ++..+|++|..++.++...+. |.+|-
T Consensus 206 aneckk--SGLldlLeaEl--------kGte-DtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPf 272 (524)
T KOG4413|consen 206 ANECKK--SGLLDLLEAEL--------KGTE-DTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPF 272 (524)
T ss_pred HhHhhh--hhHHHHHHHHh--------cCCc-ceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcH
Confidence 111111 11112222111 0112 445566677777777664 344567777667777766654 33333
Q ss_pred HHHHHHHHHHHHH------hhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 679 VRQSAFALLGDLA------RVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 679 vr~~a~~~l~~l~------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
-+-.++...|.+. ...++.....+...+...+..+... +++....|+.++|.+....
T Consensus 273 ekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn----DpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 273 EKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN----DPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC----CchHHHHHHHHHHhccCCc
Confidence 3222333333322 2223344444555555566666655 5678889999999997654
No 144
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=97.45 E-value=0.11 Score=54.30 Aligned_cols=212 Identities=12% Similarity=0.165 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccc
Q 002596 583 FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS 662 (902)
Q Consensus 583 ~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~ 662 (902)
..++.+++.++..+|..+.++.+.++..+....-
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl---------------------------------------------- 123 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTL---------------------------------------------- 123 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----------------------------------------------
Confidence 5788999999999999888888887766542211
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHH----hHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHh
Q 002596 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQA----RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (902)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~ 738 (902)
+++..-+ .+-|+.|..-+.++..+.+.|...+.. .+..++..+.-.++.+ +.++...++.++..+...
T Consensus 124 ---~MI~~d~-~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~----~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 124 ---PMINKDF-EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT----NREISETGLNILLELLNN 195 (319)
T ss_dssp ---HHHSSTS-SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS----SHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhhh-hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence 1110000 134677888888888888887765543 3456777777777777 678999999999998866
Q ss_pred hhh-------h-hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhc-CCcc-CcChHHHHHHHHHhccCCCCc
Q 002596 739 ARQ-------E-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVC-PELV-SPHMEHFMQPWCIALSMIRDD 808 (902)
Q Consensus 739 ~~~-------~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~-~~~l~~~l~~~~~~l~~~~d~ 808 (902)
... . ++.|+-.++..+..++.++. |+..-..-+..+.++.... .+.+ .|-.+ +. .
T Consensus 196 ~~~~~~~~~~~F~~~y~~~il~~if~vltD~~--Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~----------~~-~-- 260 (319)
T PF08767_consen 196 VSKTNPEFANQFYQQYYLDILQDIFSVLTDSD--HKSGFKLQSQILSNLFRLVESGSIQVPLFD----------PG-M-- 260 (319)
T ss_dssp HHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT---GGGHHHHHHHHHHHHHHHHTT-SSSSSSS----------TT-T--
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc--cHHHHHHHHHHHHHHHHHHHcccccccccC----------CC-C--
Confidence 543 2 46677888888999998886 5666666677777777531 1111 11111 11 1
Q ss_pred HHHHHHHHHHHHHHHc-CchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHh
Q 002596 809 TEKEDAFRGLCAMVKA-NPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQ 864 (902)
Q Consensus 809 ~e~~~~~~~l~~li~~-~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~ 864 (902)
.-+....+.+..++.. -|..-...+..++..+.++.+ ..++.+..+++.+-.+|+
T Consensus 261 ~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~-d~~~Fk~~lrDFlI~~ke 316 (319)
T PF08767_consen 261 SNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNN-DPEKFKTHLRDFLIQLKE 316 (319)
T ss_dssp -HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhhh
Confidence 1122333444444432 243333455555555555443 234567777776666665
No 145
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.41 E-value=0.2 Score=63.37 Aligned_cols=339 Identities=13% Similarity=0.107 Sum_probs=178.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ccchhhHHh--H-HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhh
Q 002596 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LMPSALFVS--M-DQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSF 255 (902)
Q Consensus 181 l~~~l~~~l~~~~~~vr~~al~~l~~~~~-~~~~~~~~~--~-~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~ 255 (902)
+-+.+...-.+++..++..|+..|..+.. ++...-..+ + ..+|..+.... ...+.++|..+++|+..++......
T Consensus 1138 l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n 1217 (1780)
T PLN03076 1138 LSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN 1217 (1780)
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh
Confidence 33334443345577899999998877653 333211111 1 23454444433 3456799999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhH----HhhhhhhHHHHHhhccCChhhhhhhhhhccCC
Q 002596 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (902)
Q Consensus 256 ~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~----~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~ 331 (902)
+..-++.++..+.....+.++.+...|++.+..+++. ....+ ...+..++..+..+..... +
T Consensus 1218 IkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d--~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~----------- 1283 (1780)
T PLN03076 1218 VKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE--YFPYITETETTTFTDCVNCLIAFTNSRF-N----------- 1283 (1780)
T ss_pred hhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh--hhhhccccchhHHHHHHHHHHHHHhCcC-c-----------
Confidence 9999999999888777788888889999988776553 11111 1233344433332221100 0
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chhhhhHHHHHHhhcc-CCCCchHHH
Q 002596 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSA-SGDEAWKDR 409 (902)
Q Consensus 332 ~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~-~~~~~~~~r 409 (902)
-++.-.|...|..++..+-+ .+..... ...... ... ....
T Consensus 1284 ---------------------------------~nISL~AI~lL~~~~~~La~~~~~~~~~---~~~~~~~~~~--s~~~ 1325 (1780)
T PLN03076 1284 ---------------------------------KDISLNAIAFLRFCATKLAEGDLGSSSR---NKDKEAPPSS--PQSG 1325 (1780)
T ss_pred ---------------------------------ccccHHHHHHHHHHHHHHHhcccccccc---cccccccccc--cccc
Confidence 01222344444444333311 0000000 000000 000 0000
Q ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc
Q 002596 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (902)
Q Consensus 410 ~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 489 (902)
.........+.. .+....+.-.++..+.....|+.+.||..|+.+|-++.........+..-...+..++-.++..++
T Consensus 1326 ~~~~~~~~~~~~--~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1326 KDGKQESGEFTD--KDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred cccccccccccc--chhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 011112222234444445568999999999998877665544321111111223444444444332
Q ss_pred C---C--------------------CHHHHHHHHHHHHHHHHH---hcccchHhHHHHHHHHHHHHhccchhhHHHHHHH
Q 002596 490 D---T--------------------NKRVQEAACSAFATLEEE---AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (902)
Q Consensus 490 d---~--------------------~~~v~~~a~~al~~l~~~---~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~a 543 (902)
. . ..-+.+.+..+|..+++- .-+.+.+.++.++..|..++...+...-+....+
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~ 1483 (1780)
T PLN03076 1404 HAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAA 1483 (1780)
T ss_pred HhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 1 0 011344455555554443 3455666777777777777777666666778899
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhc
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~ 574 (902)
+..++...|..|.. +..+.++..+.+.+..
T Consensus 1484 l~~li~~ng~~F~~-~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1484 FVRLMSNAGHLFSD-EKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHhhccCCH-HHHHHHHHHHHHHHHH
Confidence 99999999988874 5566677666666654
No 146
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.41 E-value=0.25 Score=54.05 Aligned_cols=138 Identities=13% Similarity=0.046 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHhcchhhhh--hhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH-HHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLY--PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLM 482 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~--~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~il~ 482 (902)
...+.||+.++-.++.... .+. ..-..+...+++.+.||...|..++.-++.++.-.+.+. ...++ ...+.
T Consensus 391 ~~~~aaa~l~~~s~srsV~-aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-----kskfl~~ngId 464 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVS-ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-----KSKFLRNNGID 464 (678)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-----HHHHHHcCcHH
Confidence 6788899999887776443 121 222346777888889999999999988888777665432 23333 35777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccc--hHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 002596 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~--~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~ 549 (902)
.+.+.+.+....+|..+.++|..+.=.+.+.. .++-.--...+....++++..+++..+..+.++..
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 88888889999999999999998887764433 33333345556677778888999988888887764
No 147
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.40 E-value=0.0017 Score=59.66 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHH---HHHhc
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~-~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l---~~~~~ 552 (902)
++..++.++.++.+....-+--|...+..+++. .++.+.|.+++++..+..+|+..+..+...++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 568899999999987777777888888888888 68889999999999999999999999999999999988 66788
Q ss_pred ccCCchhhhhhhhHHHHHHHhc
Q 002596 553 FELNQPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 553 ~~~~~~~~~~~ll~~l~~~l~~ 574 (902)
+.+. ||+.+++|.+ +.+.+
T Consensus 116 ~aLv--PyyrqLLp~l-n~f~~ 134 (183)
T PF10274_consen 116 EALV--PYYRQLLPVL-NLFKN 134 (183)
T ss_pred HHHH--HHHHHHHHHH-HHHHh
Confidence 8887 9999999855 44443
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.37 E-value=0.0002 Score=44.85 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHH
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (902)
++|.+++.++|+++.||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
No 149
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.29 E-value=0.2 Score=52.11 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=124.1
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-----------CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhc--
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI-- 162 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-----------~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~-- 162 (902)
..++..|..-+-..|+.++++.+.+.+.... .+||+++..|..+-.+++...-.|. +|...++.-
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~--mlRec~k~e~l 156 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGD--MLRECIKHESL 156 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHH--HHHHHTTSHHH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHH--HHHHHHhhHHH
Confidence 4455566666777888888888888776422 4568888888888887764333222 233322211
Q ss_pred hhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc----hhhHHhHHHHHHHHHHhhCCCCHHHH
Q 002596 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVR 238 (902)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~vr 238 (902)
...+-. +..+-.+++..+.++-+|-.-|+.++..+....+ +.+..+.+.+....-.++.+++.-.|
T Consensus 157 ~~~iL~----------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 157 AKIILY----------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHHT----------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhC----------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 001000 2234457788899999999999999999875544 33556677888877788888899999
Q ss_pred HHHHHHHHHHHhhC--hhhhhhhHH--HHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCc
Q 002596 239 KLVCAAFNLLIEVR--PSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (902)
Q Consensus 239 ~~~~~~l~~l~~~~--~~~~~~~l~--~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 295 (902)
+++++.|+.+.... ...+..|+. .-+..++..+.+....++.+|+..+.-++-.+..
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999988643 344555653 5566778888999999999999998887766433
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.29 E-value=0.12 Score=65.27 Aligned_cols=331 Identities=15% Similarity=0.176 Sum_probs=179.5
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSV 204 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l 204 (902)
...|.-+-+.+.....+.+..++.-|+..|..++-.+.+.- +..+ .+.-+.++..+...+.+ .+.++|...++|+
T Consensus 1132 ~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~e--EL~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeCv 1207 (1780)
T PLN03076 1132 SSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLERE--ELAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRCV 1207 (1780)
T ss_pred HhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchh--hhhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 34454455666665555566777778888777776554320 1100 02234566666665554 5789999999999
Q ss_pred HHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh----hhHHHHHHHHHhhhcC-CCHHHH
Q 002596 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNKD-TDDDVA 279 (902)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~l~~i~~~~~~~~~~-~~~~v~ 279 (902)
.+++......+..-...++..+-..+.+.++.+-..+++.+..+...+-..+. ..+..++..+...... .+.++.
T Consensus 1208 ~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nIS 1287 (1780)
T PLN03076 1208 SQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDIS 1287 (1780)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCccccc
Confidence 99987654444444445555555556677788888899998887765433222 3445555555544432 346678
Q ss_pred HHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhh------hhhh-ccC-C-CCCCCC---CCCcccccc-
Q 002596 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL------VEAE-EDE-S-LPDRDQ---DLKPRFHSS- 346 (902)
Q Consensus 280 ~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~------~~~~-~~~-~-~~~~~~---~i~p~~~~~- 346 (902)
..|++++..++.. . .+..+.. .... ++.+. ...+ .++ . ..+.+. ..-|.+...
T Consensus 1288 L~AI~lL~~~~~~--L---a~~~~~~--------~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076 1288 LNAIAFLRFCATK--L---AEGDLGS--------SSRN-KDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred HHHHHHHHHHHHH--H---Hhccccc--------cccc-cccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 8888877655332 0 0000000 0000 00000 0000 000 0 000000 000000000
Q ss_pred cCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhh---------hhHHHHHHhh---cc-C------------
Q 002596 347 RLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP---------TLMPVIQAKL---SA-S------------ 401 (902)
Q Consensus 347 ~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~---------~l~~~l~~~l---~~-~------------ 401 (902)
.... | + .-.+|..|...|-++...+|..+-+ .++|++...- .. .
T Consensus 1354 ~l~~-D----~------RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076 1354 ELSF-D----P------RPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred HHhc-C----C------cHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 0000 0 1 1138999999998888887753321 3444443211 00 0
Q ss_pred ----CCCchHHHHHHHHHHHHHHhcch---hhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcch
Q 002596 402 ----GDEAWKDREAAVLALGAIAEGCI---KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (902)
Q Consensus 402 ----~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 474 (902)
+...|. .+.+..+|..+++-.. +.+.+.++.++..+..++..++..+-..++.|+.++....... ...
T Consensus 1423 ~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~----F~~ 1497 (1780)
T PLN03076 1423 QGELDQDAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL----FSD 1497 (1780)
T ss_pred ccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc----CCH
Confidence 001154 5666667766665443 4456778888888888888999999999999999988765432 345
Q ss_pred hhHHHHHHHHHHHhcC
Q 002596 475 EQFEKVLMGLLKRILD 490 (902)
Q Consensus 475 ~~~~~il~~l~~~l~d 490 (902)
+....++..+.+.+..
T Consensus 1498 ~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1498 EKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666655543
No 151
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.26 E-value=0.017 Score=66.53 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=148.7
Q ss_pred HHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002596 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 131 ~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (902)
.+-+.+...+.+.+|..|..|+..+..+++.-.... . +...+.+...+--.+.|.+..|...|+.++..+...
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~--~-----~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEI--V-----KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhcccccc--c-----cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 344667777888999999999999988888655111 1 122233444444455677899999999999999999
Q ss_pred cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 002596 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (902)
Q Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~ 290 (902)
++..+.++...+.+.++..+.+....+|..+..++..+.+. ..+..+.+.++..+.+..+.++..+..++....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 88888888888889999988888889999999999888873 455677888888889999999998888877765
Q ss_pred ccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHH
Q 002596 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (902)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~ 370 (902)
+........+.-+..++|.++.....++ -.+|.+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~----------------------------------------------~~VR~A 433 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTD----------------------------------------------KDVRKA 433 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCc----------------------------------------------HHHHHH
Confidence 5422122334455666666655443211 138999
Q ss_pred HHHHHHHHHhhcCcchhhhhHHH
Q 002596 371 SAAALDVLSNVFGDEILPTLMPV 393 (902)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~ 393 (902)
|..++..+...+|+.++..++..
T Consensus 434 a~e~~~~v~k~~Ge~~~~k~L~~ 456 (815)
T KOG1820|consen 434 ALEAVAAVMKVHGEEVFKKLLKD 456 (815)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999998765544443
No 152
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.23 E-value=0.007 Score=56.23 Aligned_cols=139 Identities=23% Similarity=0.253 Sum_probs=107.2
Q ss_pred hhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHhhccCCCC-hHHHHHHHHHHHhhHHH
Q 002596 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKF 463 (902)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~ 463 (902)
.++.+...+.+++++.+ +..|..|+..++.+.+.+ .+.+..+...-+..+++.++.++ +.++..++.+++.+...
T Consensus 22 ~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45667777888999988 999999999999999988 56666777777777888777654 57899999999999887
Q ss_pred Hhhhhc--CCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHH
Q 002596 464 IVQDIG--HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (902)
Q Consensus 464 ~~~~~~--~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l 529 (902)
..+... -+...+.+..+++.+++.+.+ ..+...++.+|..+....+..+.||..++-..+...+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 654310 011344566777777776665 5778889999999999989999999888877666554
No 153
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.053 Score=55.09 Aligned_cols=188 Identities=18% Similarity=0.116 Sum_probs=119.1
Q ss_pred chhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHH-HHHHHHHH
Q 002596 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAK 711 (902)
Q Consensus 633 d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~ 711 (902)
+.+-+..+++-+..+++.+.... .+.+...+.+++. .+++.+..+|..|..+||.++.+.+..-...++ ..++.+++
T Consensus 96 ~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 44556678888888888776532 2222222444444 889999999999999999999998754333332 36677777
Q ss_pred hcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcC
Q 002596 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM-TVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPH 790 (902)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 790 (902)
.+..+. +..+|.+|.+|++.++.+.+.....|.. .=...|.+++..++. ...++..++..++.+....+..-.-.
T Consensus 174 ~ls~~~---~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 174 ILSSDD---PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHccCC---CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 777543 4589999999999999877643333321 115667788887542 34556667777788876544321101
Q ss_pred hHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCc
Q 002596 791 MEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANP 826 (902)
Q Consensus 791 l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p 826 (902)
-...++..+..+....+.+-+..+..+++.++...+
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 122233333333333556667788888888887644
No 154
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.23 E-value=0.62 Score=53.19 Aligned_cols=180 Identities=15% Similarity=0.143 Sum_probs=99.6
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhcccc-CC----C-------
Q 002596 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS-DV----P------- 171 (902)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~-~~----~------- 171 (902)
|....||..+...++.+....+...--.++..+...-.++.-.+++.+-.++..-..-+.+...+ ++ +
T Consensus 483 DkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~~~~~ii~d~~ 562 (1529)
T KOG0413|consen 483 DKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLLDEQQIIQDFK 562 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcCcchhhhhhcc
Confidence 56788999998888888776533332334433333332222334444333332111111111000 00 0
Q ss_pred C-C---CC-cchhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002596 172 G-L---AE-CPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (902)
Q Consensus 172 ~-~---~~-~~~~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l 245 (902)
+ . .+ +.-..++-.+...++ +....++..|+..+.+...+... ...++..+-.|..+..|+-..+|+.++..|
T Consensus 563 ~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~--~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sl 640 (1529)
T KOG0413|consen 563 LKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE--ASKFEVVLSILQMLCRDRMVSVRKTGADSL 640 (1529)
T ss_pred hhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccch--hhcchhHHHHHHHHhcCcchHHHHHHHHHH
Confidence 0 0 00 112345555666666 45667899999999888766432 233444455555566788888999999999
Q ss_pred HHHHhhChhhh---hhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 002596 246 NLLIEVRPSFL---EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (902)
Q Consensus 246 ~~l~~~~~~~~---~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l 289 (902)
+.+....|..+ ..++..+++ .+.+.+..+...|..|+..+
T Consensus 641 tel~~~~pr~~~~~~~wl~~li~----~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 641 TELMLRDPRLFSLSSKWLHTLIS----MLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHhhCchhhhhhHHHHHHHHH----HHhccHHHHHHHHHHHHHHH
Confidence 99987777655 122333333 34555666777777776543
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.19 E-value=0.0035 Score=57.64 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=77.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-chHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHH---HHh
Q 002596 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARV-CPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL---AVK 738 (902)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l---~~~ 738 (902)
.++|++...+...+..-+--|...+.++... .++.+.|.+++++..+.+.|... +.+|..+++.+|-.+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr----~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR----DPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHhhhh
Confidence 3788888888877766677788888899988 77889999999999999999988 789999999999999 445
Q ss_pred hhhhhhhHHHHHHHHHHHhh
Q 002596 739 ARQEISPIVMTVVLCLVPIL 758 (902)
Q Consensus 739 ~~~~~~~~~~~il~~l~~~l 758 (902)
.|+.+.||+.++++.+.-..
T Consensus 114 vG~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFK 133 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56889999999987776333
No 156
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=1 Score=54.67 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=103.5
Q ss_pred chhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHH
Q 002596 721 TVSVANNACWAIGELAVKAR-QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 799 (902)
Q Consensus 721 ~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~ 799 (902)
...+|..++..+-..+-... .......+.+-..+...+++.+ ..+|+.++.+++-++........ +......-
T Consensus 1540 tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~---i~vre~Aa~~Lsgl~~~s~~~~~---~~k~d~~~ 1613 (1710)
T KOG1851|consen 1540 TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ---IEVREEAAKCLSGLLQGSKFQFV---SDKRDTTS 1613 (1710)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH---HHHHHHHHHHHHHHHhccccccc---hHhhhhhh
Confidence 46788887766665543221 1234566788888888888764 67999999999999876543332 22222223
Q ss_pred HhccCCCCcHH-HHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhHHHHHhcC
Q 002596 800 IALSMIRDDTE-KEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSAL 878 (902)
Q Consensus 800 ~~l~~~~d~~e-~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 878 (902)
........+++ .-.++.|+..++-..|-.+-..+|..+..+.+|...+ .-.++.+++++.-++..+. +.|+.--.++
T Consensus 1614 ~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~-D~W~~~k~~f 1691 (1710)
T KOG1851|consen 1614 NILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA-DTWREHKQSF 1691 (1710)
T ss_pred hhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh-hhhhhhhhcc
Confidence 22222222333 4468899999999999887778999999999886644 3488899999999999888 5999654444
Q ss_pred C
Q 002596 879 E 879 (902)
Q Consensus 879 ~ 879 (902)
-
T Consensus 1692 ~ 1692 (1710)
T KOG1851|consen 1692 N 1692 (1710)
T ss_pred C
Confidence 4
No 157
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.13 E-value=0.54 Score=52.74 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc----CCCh---HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHh
Q 002596 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (902)
Q Consensus 17 ~~~~l~~~~s~~~~~~r~~a~~~L~~~~~----~p~~---~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~ 89 (902)
+..+|..+.||+.. +|+++.+-|+++.+ .|+. +..|+..+.+. +.+.-+|+++.++++..+. .++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~-~~s~~vrnfsliyi~~g~~----Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEP-SDSSFVRNFSLIYIEMGFD----RLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCC-CCchHHHHHHHHHHHHhhh----cCCHH
Confidence 44466677788888 99999999987653 4554 34566666542 4468899999999975554 58999
Q ss_pred HHHHHHHHHhhhhhc
Q 002596 90 NQQYIKSELLPCLGA 104 (902)
Q Consensus 90 ~~~~i~~~ll~~l~~ 104 (902)
.+..+...+++++..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999874
No 158
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.13 E-value=0.0072 Score=55.58 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=94.0
Q ss_pred hhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhc--cCCCChHHHHHHHHHHHhhHHHH
Q 002596 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL--LDDKFPLIRSISCWTLSRFSKFI 464 (902)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~~~~~~ 464 (902)
.|.+++.+.+.+..+.+ |..|..++.++|.+.. +.|+.-+.+..-... -.+.+...........+.
T Consensus 8 yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 75 (160)
T PF11865_consen 8 YPELLDILLNILKTEQS--QSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGI----- 75 (160)
T ss_pred hHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHHhhccC-----
Confidence 57888888888886643 9999999999998864 223322211111100 011112222222111110
Q ss_pred hhhhcCCcchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHH
Q 002596 465 VQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (902)
Q Consensus 465 ~~~~~~~~~~~~~~~il~~l~~~l~d~~-~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~a 543 (902)
.+....-|..-++..++..++|++ ..-+..+..++..+.+..+....||+++++|.++..+.......++..+.-
T Consensus 76 ----~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~q 151 (160)
T PF11865_consen 76 ----SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQ 151 (160)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence 011123344568888899999875 344567888888888888777799999999999999997777666666766
Q ss_pred HHHHHHH
Q 002596 544 IGTLADA 550 (902)
Q Consensus 544 l~~l~~~ 550 (902)
++.++..
T Consensus 152 L~~lv~i 158 (160)
T PF11865_consen 152 LADLVSI 158 (160)
T ss_pred HHHHHHH
Confidence 7666543
No 159
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.05 E-value=0.03 Score=52.05 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhch-HhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh--
Q 002596 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCP-VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-- 740 (902)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-- 740 (902)
+..-+...++++++.-|-.++.+++.++..++ +.+..+....+..+.+.++.++ ...++..|+.+++.+.....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~---~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD---PPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhcCC
Confidence 44445666788889999999999999999984 5565777777777777777653 56889999999999986654
Q ss_pred -----hhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHh
Q 002596 741 -----QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIA 801 (902)
Q Consensus 741 -----~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 801 (902)
+...|.++.+++.++++++. ....+.+..++..++..+|..+.|+..++-..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-----SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 23578899999999998874 355678899999999999999999887766655443
No 160
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.023 Score=62.40 Aligned_cols=169 Identities=18% Similarity=0.182 Sum_probs=112.5
Q ss_pred HHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHH
Q 002596 40 LQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSV 119 (902)
Q Consensus 40 L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~ 119 (902)
|.-|..+.++-.++-.++. +.++-.|..+...+ .+... . ...-..||..|--+.+|.+..||+.+..+++-
T Consensus 511 L~~ygrqe~Ad~lI~el~~---dkdpilR~~Gm~t~--alAy~--G--Tgnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLR---DKDPILRYGGMYTL--ALAYV--G--TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred HHHhhhhhhhHHHHHHHhc---CCchhhhhhhHHHH--HHHHh--c--cCchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 3344445555555555444 45888887665433 22221 1 11113344433335789999999999888888
Q ss_pred HHhhcCcCchHHHHHHHHHHhc-cCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHH
Q 002596 120 VVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (902)
Q Consensus 120 i~~~~~~~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~ 198 (902)
++-.+ |+.++...+++. +-|+.+|.++..+|+..|...+. ..-+..|-.+..|+..-||+
T Consensus 582 Vl~~d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQ 642 (929)
T KOG2062|consen 582 VLFRD-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQ 642 (929)
T ss_pred eEecC-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHH
Confidence 77655 556666666665 55999999999999998875442 33455555666788889999
Q ss_pred HHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHH
Q 002596 199 LSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAE 236 (902)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 236 (902)
.|+-++.-++....+...+....|.+.+.+.+++..++
T Consensus 643 gAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 643 GALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 99999988876666667777777777777777766554
No 161
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.99 E-value=0.81 Score=50.32 Aligned_cols=430 Identities=13% Similarity=0.015 Sum_probs=207.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhh--cCChHHHHHHHHHHHHHHhhc--CcCch--HHHHHHH
Q 002596 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--AADRHIRSTVGTIVSVVVQLG--GIAGW--LELLQAL 136 (902)
Q Consensus 63 ~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~--~~~~~vr~~~a~~l~~i~~~~--~~~~w--~~ll~~L 136 (902)
.+++.---|....||.+..+-..-.+..+-.-...++.++. ++........+.++...+..+ +.+.. ...++.|
T Consensus 21 ~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~L 100 (678)
T KOG1293|consen 21 LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKL 100 (678)
T ss_pred CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHH
Confidence 45666555666676666543332222222222233444444 345566667777787777654 11111 2356888
Q ss_pred HHHhccCC-hhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccchh
Q 002596 137 VTCLDSND-INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA 214 (902)
Q Consensus 137 ~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~ 214 (902)
++++.+.| ..++++.+.++..+.+..+.. +... ......+++.+.-.+..+ ....+..+..+. . ....+++
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q---~~~~--s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a-~-~s~~~~h 173 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQ---DKKM--SLHLKSIIVKFSLLYSIELKYISRLDVSRAA-H-LSSTKDH 173 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhccccc---ccch--hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc-c-ccccchh
Confidence 89998888 789999999999998865432 1000 123366777666666522 222221111111 1 1111110
Q ss_pred ---hHH-hHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HHHhhChhhhhhhHH-----HHHH--HHHhhhcCCCHHHHH
Q 002596 215 ---LFV-SMDQYLQGLFLLSNDPSAEVRKLVCAAFN---LLIEVRPSFLEPHLR-----NLFE--YMLQVNKDTDDDVAL 280 (902)
Q Consensus 215 ---~~~-~~~~~l~~l~~~~~~~~~~vr~~~~~~l~---~l~~~~~~~~~~~l~-----~i~~--~~~~~~~~~~~~v~~ 280 (902)
+.+ -..+-+..+. ...+...|.+++.++. .+.-+.+..-...+. .+.+ ...+..++.+.+.+.
T Consensus 174 q~Il~Na~i~ekI~~l~---~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 174 QLILCNAGILEKINILL---MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred hheeccccchhhHHHHH---HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 000 0111112221 1224567788888877 444333332111111 1111 223345666777777
Q ss_pred HHHHHHHHhhccCCc------hhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCC
Q 002596 281 EACEFWHSYFEAQLP------HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (902)
Q Consensus 281 ~al~~l~~l~~~~~~------~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~ 354 (902)
.+++++..+.+.... +..+-+.-+..+-.. ..+. +.
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~-~~i~-------------------------l~------------ 292 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY-NCIV-------------------------LM------------ 292 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHH-hhhe-------------------------ee------------
Confidence 777777766554100 000001100000000 0000 00
Q ss_pred CCCCccccccccHHH--HHHHHHHH-HHhhcCc-----chhhhhHHHHHH--hhccCCCCchHHHHHHHHHHHH---HHh
Q 002596 355 EDDDDDIVNVWNLRK--CSAAALDV-LSNVFGD-----EILPTLMPVIQA--KLSASGDEAWKDREAAVLALGA---IAE 421 (902)
Q Consensus 355 ~~dd~d~~~~~~~r~--~a~~~l~~-l~~~~~~-----~~~~~l~~~l~~--~l~~~~~~~~~~r~~a~~~l~~---l~~ 421 (902)
..+.|+.-. +...|+.. +++.... ...+....++.. -++... .+.|.-++.-... .+.
T Consensus 293 ------~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~---~~~~~i~l~e~~i~~~~~~ 363 (678)
T KOG1293|consen 293 ------NDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD---EKYRLILLNETLILNHLEY 363 (678)
T ss_pred ------cCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc---hhhhHHHhhhhhhhhhhhh
Confidence 001121111 12222222 3333311 222222232222 123344 4555544432222 222
Q ss_pred cchhhhhhhHHH-H-HHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHH
Q 002596 422 GCIKGLYPHLSE-I-VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAA 499 (902)
Q Consensus 422 ~~~~~~~~~l~~-i-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a 499 (902)
+.....+.++.. - ...+.-.....+..++.+||-|+-.++..+... ++ ...-..+...+++.+.|++..|+..+
T Consensus 364 ~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL-~t---g~~~~dv~~plvqll~dp~~~i~~~~ 439 (678)
T KOG1293|consen 364 GLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL-RT---GLKRNDVAQPLVQLLMDPEIMIMGIT 439 (678)
T ss_pred hcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH-Hc---CCccchhHHHHHHHhhCcchhHHHHH
Confidence 222122222222 1 112222223455688999999998888765433 21 12234677777888899999999999
Q ss_pred HHHHHHHHHHhcccchHhH-HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc
Q 002596 500 CSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (902)
Q Consensus 500 ~~al~~l~~~~~~~~~p~l-~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 553 (902)
..++.+++-..++.=..++ ...++.+...+.+.+..++.....++..+.-...+
T Consensus 440 lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 440 LGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred HHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 9999999877654333333 25677778888887777787778887766544443
No 162
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=1.2 Score=51.46 Aligned_cols=287 Identities=11% Similarity=0.082 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc-
Q 002596 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL- 489 (902)
Q Consensus 411 ~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~- 489 (902)
-.+..+|.+++..++.+.+.+-..+-.++..+.++++.++..|-.|+-.++..+.-. .....+..=...++..+.
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~----s~~~lI~en~DYlv~sla~ 642 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYG----SPPHLIRENVDYLVNSLAL 642 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCC----ChHHHHHhhhHHHHHHHHH
Confidence 345677777777777776666555555666778999999999999998888765321 122222332333333222
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHH
Q 002596 490 -DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPL 568 (902)
Q Consensus 490 -d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l 568 (902)
++...+..++-..+.-++........|++.++++.+...++.+....-...+..+.++.+.++..+.+. .++..+
T Consensus 643 ~L~~~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~----~il~~~ 718 (1014)
T KOG4524|consen 643 RLNTSGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYIND----EILGHI 718 (1014)
T ss_pred HhccCCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccc----hhhHHH
Confidence 111122223333455556666667789999999999999988765432233334444444444222110 111111
Q ss_pred HHHHhcCCCC-CcchhhHHHHHHHHHHHhcc---------------------------------------ccccccHHHH
Q 002596 569 IAKWQQLPNS-DKDLFPLLECFTSIAQALGA---------------------------------------GFTQFAQPVF 608 (902)
Q Consensus 569 ~~~l~~~~~~-~~~~~~~l~~l~~i~~~~g~---------------------------------------~f~~~~~~i~ 608 (902)
.+........ ..++...++-..+....... +-.|-.+..+
T Consensus 719 ~d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv 798 (1014)
T KOG4524|consen 719 ADQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQV 798 (1014)
T ss_pred HHHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHH
Confidence 1111000000 00000000000000000000 0112222222
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhh---hHHhhhccchHHHHHHHHhcCCChHHHHHHHH
Q 002596 609 QRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS---GIESLVAQSNLRDMLLQCCMDDASDVRQSAFA 685 (902)
Q Consensus 609 ~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~ 685 (902)
....+++....--- ...+..++..++++++-....+.. .+-|.+.+ ..|.+..++.++++-+.+.|+.
T Consensus 799 ~iv~kIl~r~~~~L-------S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq--~W~~vie~~~~k~~L~v~~a~~ 869 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLL-------SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQ--TWPSVIECLLCKDPLIVQRAFS 869 (1014)
T ss_pred HHHHHHHHHHHHHh-------cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHh--hhhHHHHHHhcCchHHHHHHHH
Confidence 22222222211000 001334555677777665554443 34455554 7788889999999999999999
Q ss_pred HHHHHHhhchHhhH-HhHHHHHHHHHHhcC
Q 002596 686 LLGDLARVCPVHLQ-ARLSDFLDIAAKQLN 714 (902)
Q Consensus 686 ~l~~l~~~~~~~~~-~~~~~~l~~l~~~l~ 714 (902)
++..++..+|+-+. .++..++|.+...+.
T Consensus 870 ~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 870 CIEQMGKYSGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999986543 355666666654443
No 163
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.93 E-value=0.93 Score=49.94 Aligned_cols=130 Identities=17% Similarity=0.171 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch------hhhhhhHHHHHHHHhhcc
Q 002596 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI------KGLYPHLSEIVAFLIPLL 442 (902)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~------~~~~~~l~~i~~~l~~~l 442 (902)
+.....+.+++...|.-++.. +..+.++++++. ...|.+-+-+.+.+.+... +.....+..++..+...+
T Consensus 280 k~islFl~kls~l~p~i~lrq-~~~~~~LLdses---~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl 355 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQ-YEHFDELLDSES---FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL 355 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHH-HHHHHHHhcccc---hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh
Confidence 345566777777777655433 355667788888 9999999999998887553 223345667888888999
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
.|.+|.+|.-|+..+..+...-. ....--.++...+..++.|.+..||..|...++.++-
T Consensus 356 ~D~~py~RtKalqv~~kifdl~s------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 356 SDTYPYTRTKALQVLEKIFDLNS------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred hccchHHHHHHHHHHHHHHhCcc------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999888876322 2334456788888999999999999999999888763
No 164
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.85 E-value=0.012 Score=54.76 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhc-chhhhhhhHHHHHHHH------------hhccCCCChHHHHHHHHHHHhhHHHHhhhhc----
Q 002596 407 KDREAAVLALGAIAEG-CIKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---- 469 (902)
Q Consensus 407 ~~r~~a~~~l~~l~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---- 469 (902)
+.|.+|+.+|+.++.. -++.+..|.+.++|.- ...+.|+++++|.+|+.++..+-+.....+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4699999999999988 3445556666666543 3345799999999999999888776443211
Q ss_pred CC----c-------chhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhc-ccc-hHhHHHHHHHHHHHHhccchh
Q 002596 470 HQ----N-------GREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAA-EEL-APRLEIILQHLMMAFGKYQRR 535 (902)
Q Consensus 470 ~~----~-------~~~~~~~il~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~-~~~-~p~l~~i~~~l~~~l~~~~~~ 535 (902)
.. . ....+.++-..++..+.. .+..+....+.++..++...+ +.+ ..+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 00 0 122334444555555653 467788899999999998873 344 346788888888888887777
Q ss_pred hHHHHHHHHHHHHHHh
Q 002596 536 NLRIVYDAIGTLADAV 551 (902)
Q Consensus 536 ~~~~~~~al~~l~~~~ 551 (902)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7777888888776543
No 165
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.22 Score=54.86 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=78.8
Q ss_pred CHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc---CcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhch
Q 002596 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~---~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
..+..+++...++.+..+++..||.-.+++++.+.... ..+.+..+...+..-+.+-.|.+|..|+.+|..+=++-.
T Consensus 79 e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 79 EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 34455666667777777899999999999999998732 335667788888888889999999999999987754222
Q ss_pred hccccCCCCCCCcchhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHhc
Q 002596 164 QVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIM 209 (902)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~al~~l~~~~~ 209 (902)
+ .+ ..+...+...+ +||+++||.+|+.++..--.
T Consensus 159 d---ee---------~~v~n~l~~liqnDpS~EVRRaaLsnI~vdns 193 (892)
T KOG2025|consen 159 D---EE---------CPVVNLLKDLIQNDPSDEVRRAALSNISVDNS 193 (892)
T ss_pred C---Cc---------ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcc
Confidence 1 11 12233333334 57899999999988755333
No 166
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.80 E-value=1 Score=48.50 Aligned_cols=357 Identities=14% Similarity=0.110 Sum_probs=161.1
Q ss_pred HHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHH
Q 002596 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIR 450 (902)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 450 (902)
+...++.+.....++++..++..+..++++.. - |.. .+...+..-. ......++.|+.++..+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~---~--~~~---~f~~~~~~~~--------~~~~~fl~lL~~~d~~i~ 118 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD---T--RVK---LFHDDALLKK--------KTWEPFFNLLNRQDQFIV 118 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhch---H--HHH---HHHHHhhccc--------cchHHHHHHHcCCchhHH
Confidence 33334433343345677777777777776533 1 111 1111111001 122333345567788999
Q ss_pred HHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHH
Q 002596 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMM 527 (902)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~v~~~a~~al~~l~~~~--~~~~~p~l~~i~~~l~~ 527 (902)
..|+..++.+..+-... ........++..+...+..+ +...+..|..++..++..- ...+.. ...++.|..
T Consensus 119 ~~a~~iLt~l~~~~~~~----~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~ 192 (429)
T cd00256 119 HMSFSILAKLACFGLAK----MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVK 192 (429)
T ss_pred HHHHHHHHHHHhcCccc----cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHH
Confidence 99999999887653321 11122333444555555532 3455656667777776431 111100 113444455
Q ss_pred HHhccchhhHHHHHHHHHHHH-HHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccc--ccccc
Q 002596 528 AFGKYQRRNLRIVYDAIGTLA-DAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAG--FTQFA 604 (902)
Q Consensus 528 ~l~~~~~~~~~~~~~al~~l~-~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~--f~~~~ 604 (902)
.++.... .....|.++-.+- -+..+.....-.-..++|.+.+.++... .++.+.-++.++.++...-... -..+.
T Consensus 193 ~L~~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 270 (429)
T cd00256 193 LLSNATL-GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAA 270 (429)
T ss_pred HHhhccc-cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 5543221 2222233322211 1111111100111357778888777653 2222345566666666543211 11122
Q ss_pred HHHHH-HHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhh------hHHhhhccchHHHHHHHHhcCCCh
Q 002596 605 QPVFQ-RCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGS------GIESLVAQSNLRDMLLQCCMDDAS 677 (902)
Q Consensus 605 ~~i~~-~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~ 677 (902)
..++. .+.+.++.-... .-+ |.|+.+. +..+-+.+.+ .|+.|... +. ...+ +-+|
T Consensus 271 ~~mv~~~l~~~l~~L~~r-----k~~---DedL~ed----l~~L~e~L~~~~k~ltsfD~Y~~E--l~---sg~L-~WSp 332 (429)
T cd00256 271 LQMVQCKVLKTLQSLEQR-----KYD---DEDLTDD----LKFLTEELKNSVQDLSSFDEYKSE--LR---SGRL-HWSP 332 (429)
T ss_pred HHHHHcChHHHHHHHhcC-----CCC---cHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHH--Hh---cCCc-cCCC
Confidence 22222 233333322110 001 3344321 2222222222 24444332 11 1111 1122
Q ss_pred HHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHH--HHHHHHH
Q 002596 678 DVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVM--TVVLCLV 755 (902)
Q Consensus 678 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~--~il~~l~ 755 (902)
..+...|+ -.+..+.-.+. -+++..+.+.|+.++ ++.+-..||.=+|+++.+.|..- ..+. ..=..++
T Consensus 333 ~H~se~FW-~EN~~kf~~~~-----~~llk~L~~iL~~s~---d~~~laVAc~Dige~vr~~P~gr-~i~~~lg~K~~vM 402 (429)
T cd00256 333 VHKSEKFW-RENADRLNEKN-----YELLKILIHLLETSV---DPIILAVACHDIGEYVRHYPRGK-DVVEQLGGKQRVM 402 (429)
T ss_pred CCCCchHH-HHHHHHHHhcc-----hHHHHHHHHHHhcCC---CcceeehhhhhHHHHHHHCccHH-HHHHHcCcHHHHH
Confidence 22222332 11111111111 245555666664332 34667889999999999875321 1111 1234567
Q ss_pred HhhcCChhhhhhHHHHHHHHHHHHhhh
Q 002596 756 PILKHSEELNKSLIENSAITLGRLAWV 782 (902)
Q Consensus 756 ~~l~~~~~~~~~~~~~~~~~l~~l~~~ 782 (902)
.++++++ +.++-+|..|+++++..
T Consensus 403 ~Lm~h~d---~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 403 RLLNHED---PNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHhcCCC---HHHHHHHHHHHHHHHHh
Confidence 7777774 89999999999998654
No 167
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.1 Score=48.46 Aligned_cols=184 Identities=15% Similarity=0.175 Sum_probs=101.7
Q ss_pred hhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHH
Q 002596 634 KEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCC--MDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (902)
Q Consensus 634 ~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 711 (902)
.++|-...+++..++..+|++- -+..+...+ .+.+++.-++++..+..++++....-.+.++.++..+.+
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~e--------~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~n 437 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSDE--------CLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICN 437 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhC
Confidence 3566667777777777777642 222222222 245788899999999999987765544555555555554
Q ss_pred hcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcCh
Q 002596 712 QLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM 791 (902)
Q Consensus 712 ~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 791 (902)
.-. -..+|..++.-+|++......+ ..+++.+++-+...+.. ....-.++.++-++...+.....+.+
T Consensus 438 lp~------Q~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~~~~~-----~~~as~~a~~~~~i~~~c~~~~~~l~ 505 (559)
T KOG2081|consen 438 LPE------QAPLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQGLQL-----KRLASAAALAFHRICSACRVQMTCLI 505 (559)
T ss_pred Ccc------chhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhhh-----cchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 322 2359999999999987655422 11222233322222221 12334455555666655554444444
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCch-hhhhhHHHHhh
Q 002596 792 EHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPS-GALSSLVFMCR 838 (902)
Q Consensus 792 ~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~-~~~~~l~~i~~ 838 (902)
+.+....... ....-.+|.....+|+..++.+-|. .+..++..+|.
T Consensus 506 ~~~~~l~~~l-~~~~~~~e~a~l~~~~s~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 506 PSLLELIRSL-DSTQINEEAACLLQGISLIISNLPAHKAKIALEELCE 552 (559)
T ss_pred HHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCCHhhhhHHHHHHhh
Confidence 4433322211 1112235555688888888888774 23344444443
No 168
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.75 E-value=1.3 Score=48.93 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=82.0
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhh---cC------cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhcc
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQL---GG------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~---~~------~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (902)
+.+...|.+++-.+|-....+.+++... ++ +.....++..+.+-+.+..|..|.-|++.+..++..-....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 4455667777888898888888887644 22 23445677778888889999999999999999987543321
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Q 002596 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (902)
..-..+...+...++|.+.-||+.|++.+..+....|
T Consensus 382 ---------~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 ---------GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ---------chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1226778888999999999999999999998875544
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.72 E-value=1.7 Score=49.93 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=112.5
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchH-hhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh
Q 002596 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV-HLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (902)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (902)
..+.|.+...+...+..+|..-+..+..+..+.|. .+.|.++.++|.+++.|+-+ +..||-.+..++-.+....+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~----D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP----DVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC----ccchhhhHhhhhhHHHHhcc
Confidence 34778888877766677788888888888888884 56799999999999999988 67888888888888776666
Q ss_pred hhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCC-ccCcChHHHHHHHHHhccCCC
Q 002596 741 QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPE-LVSPHMEHFMQPWCIALSMIR 806 (902)
Q Consensus 741 ~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~l~~~~ 806 (902)
.-...|+..+++.+..+=.++++..-.+|+.|..+++.+.+..|. .+.||-+.++..+...|.+++
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 666788999999988776665532368999999999999997664 456788889988888876643
No 170
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.72 E-value=1.2 Score=48.03 Aligned_cols=152 Identities=11% Similarity=0.147 Sum_probs=80.1
Q ss_pred CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC-CHHHHHHHHHHHH
Q 002596 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVN 205 (902)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~ 205 (902)
+.|..+++ .+..++.-+.+.++.+|..++........ ....+.+++.+...++.+ +...+..|+.|+.
T Consensus 101 ~~~~~fl~----lL~~~d~~i~~~a~~iLt~l~~~~~~~~~-------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~ 169 (429)
T cd00256 101 KTWEPFFN----LLNRQDQFIVHMSFSILAKLACFGLAKME-------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQ 169 (429)
T ss_pred cchHHHHH----HHcCCchhHHHHHHHHHHHHHhcCccccc-------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHH
Confidence 34444444 45667778888999999888764332111 123344556666666654 4667778888998
Q ss_pred HHhcccchh-hHHhHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhChhhhhhhH--HHHHHHHHhhhcCC-CHHHH
Q 002596 206 QFIMLMPSA-LFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHL--RNLFEYMLQVNKDT-DDDVA 279 (902)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~l~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~i~~~~~~~~~~~-~~~v~ 279 (902)
.++..-+-. ....- ..++.+..++... +.+..=.++-|+-.+. ..++ ....+ ..+++.+...++.. .+.+.
T Consensus 170 ~LL~~~~~R~~f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvv 246 (429)
T cd00256 170 MLLRVDEYRFAFVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPH-AAEVLKRLSLIQDLSDILKESTKEKVI 246 (429)
T ss_pred HHhCCchHHHHHHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHH-HHHhhccccHHHHHHHHHHhhhhHHHH
Confidence 887643211 11111 1344455444321 2233333333332221 1111 21222 35666666665543 56677
Q ss_pred HHHHHHHHHhhcc
Q 002596 280 LEACEFWHSYFEA 292 (902)
Q Consensus 280 ~~al~~l~~l~~~ 292 (902)
+.++..+..+.+.
T Consensus 247 Rv~l~~l~Nll~~ 259 (429)
T cd00256 247 RIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777777664
No 171
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.67 E-value=0.0035 Score=39.20 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=26.8
Q ss_pred hHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcc
Q 002596 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (902)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~ 423 (902)
++|.+.+.++|++ |++|.+|+.+|+.+++.|
T Consensus 1 llp~l~~~l~D~~---~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPS---PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SS---HHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCC---HHHHHHHHHHHHHHHhhC
Confidence 4788889999999 999999999999998764
No 172
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.67 E-value=0.51 Score=51.65 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHHHHHhhcCcchhhhhHH-HHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHhh
Q 002596 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIP 440 (902)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~i~~~l~~ 440 (902)
..++.|..|+.+|+.++..++......++. .+..+|++.. -..|..|.+.+..++..+...-. +..+.+.+.+..
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456889999999999999998876666665 6899999988 89999999999999987653321 113455566666
Q ss_pred ccCCC
Q 002596 441 LLDDK 445 (902)
Q Consensus 441 ~l~d~ 445 (902)
.|.++
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66643
No 173
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.023 Score=55.97 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=104.1
Q ss_pred ccccHHHHHHHHHHHHHhhcCcchhhhh---HHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHh
Q 002596 363 NVWNLRKCSAAALDVLSNVFGDEILPTL---MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (902)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l---~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~ 439 (902)
.+|.....+...+.+++..-++.+-+.+ +-.+.+-+++.. -.+-.+|+++++.+.....+.+...++.++-.++
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR---S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll 176 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR---SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLL 176 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888887765443333 333444444444 6678899999999999888888788888888888
Q ss_pred hccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Q 002596 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (902)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (902)
..-.+.+..||..|-.+|..+..+..+ ..+++.+...+...+++++..++.++......++
T Consensus 177 ~ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 177 HKASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hhhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 888888999999999999988876643 3667777777888899999999988887776653
No 174
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.22 Score=51.73 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=104.5
Q ss_pred HHHHHhcchhhhhh--hHHHHHHH-HhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCC
Q 002596 416 LGAIAEGCIKGLYP--HLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN 492 (902)
Q Consensus 416 l~~l~~~~~~~~~~--~l~~i~~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~ 492 (902)
.+.+.+.+...+.+ .+..++.. +.+.++++++.||..|..|+|-++-. ..+...+.++.+...+...+
T Consensus 7 ~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---------d~~~a~~~l~l~~~~~~~~~ 77 (298)
T PF12719_consen 7 TQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---------DKELAKEHLPLFLQALQKDD 77 (298)
T ss_pred HHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---------ChHHHHHHHHHHHHHHHhCC
Confidence 33444444433333 44466665 45899999999999999999998763 23455566667777776568
Q ss_pred HHHHHHHHHHHHHHHHHhcccch---------HhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhh
Q 002596 493 KRVQEAACSAFATLEEEAAEELA---------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI 563 (902)
Q Consensus 493 ~~v~~~a~~al~~l~~~~~~~~~---------p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ 563 (902)
..|+..|+.++..++-..+.... .....++..+.+.+.+.+.+.+..+.+++..+.-.. .+.. .+.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~--~i~~---~~~ 152 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG--RISD---PPK 152 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC--CCCc---HHH
Confidence 99999999999998876543221 223467888888888877677778888888766432 2211 134
Q ss_pred hhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHh
Q 002596 564 LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQAL 596 (902)
Q Consensus 564 ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~ 596 (902)
++..|+-.|-+....+. ..+-.|++.+...+
T Consensus 153 vL~~Lll~yF~p~t~~~--~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 153 VLSRLLLLYFNPSTEDN--QRLRQCLSVFFPVY 183 (298)
T ss_pred HHHHHHHHHcCcccCCc--HHHHHHHHHHHHHH
Confidence 45555555544332221 24445565555444
No 175
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.54 E-value=0.014 Score=53.67 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=93.9
Q ss_pred HhhhccchHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCcc-chhHhhhHHHHHH
Q 002596 656 ESLVAQSNLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIG 733 (902)
Q Consensus 656 ~~~~~~~~l~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~v~~~a~~alg 733 (902)
.||...|.+++.+...++.+ +..+|..++.++|-+- .+.||.-+.+. ...+.....+ +........
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~---~~~~~~~~~~~~~~~~~~~l---- 70 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQ---KSLDSKSSENSNDESTDISL---- 70 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhccc---ccCCccccccccccchhhHH----
Confidence 35555567888888888654 6899999999999865 34555443221 1111110000 011111111
Q ss_pred HHHHhh---hhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHH
Q 002596 734 ELAVKA---RQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTE 810 (902)
Q Consensus 734 ~l~~~~---~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e 810 (902)
..... .+++ |...++..|..++.+++ -.+...+++.++-.+.........||+++++|.++..+....+ .-
T Consensus 71 -~~~~~~~~~ee~--y~~vvi~~L~~iL~D~s--Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~ 144 (160)
T PF11865_consen 71 -PMMGISPSSEEY--YPTVVINALMRILRDPS--LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SL 144 (160)
T ss_pred -hhccCCCchHHH--HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HH
Confidence 11111 2333 34456788999999886 3455557777777777665555688999999999999997665 66
Q ss_pred HHHHHHHHHHHHH
Q 002596 811 KEDAFRGLCAMVK 823 (902)
Q Consensus 811 ~~~~~~~l~~li~ 823 (902)
++..+.-|+.++.
T Consensus 145 ~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 145 REFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888875
No 176
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.8 Score=47.69 Aligned_cols=146 Identities=14% Similarity=0.207 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHH
Q 002596 13 GFNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (902)
Q Consensus 13 ~~~~~~~~l~~~~-s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~ 91 (902)
.+.++..+.+... +.|.. .|-+||+.|.++..+|+++.-+..++.+ +..+-...+|+..|-+.+.++- .++-+.|
T Consensus 3 sLaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qr 78 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQR 78 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHH
Confidence 3566777777775 45777 9999999999999999999877777765 5566677888888888887664 6899999
Q ss_pred HHHHHHHhhhhhc--C--ChHHHHHHHHHHHHHHhhcCcC------chHHHHHHHHHHhccCChhhhhHHHHHHHHHHhh
Q 002596 92 QYIKSELLPCLGA--A--DRHIRSTVGTIVSVVVQLGGIA------GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (902)
Q Consensus 92 ~~i~~~ll~~l~~--~--~~~vr~~~a~~l~~i~~~~~~~------~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~ 161 (902)
-.|++-++..+.. | .+.+-.++.++++.+.+..|.+ .+.+.+..+...++.++.+.-..++.+|..++.+
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 9999999999975 2 5678888899999998876431 3456666666666666655555666666666655
Q ss_pred c
Q 002596 162 I 162 (902)
Q Consensus 162 ~ 162 (902)
+
T Consensus 159 m 159 (1082)
T KOG1410|consen 159 M 159 (1082)
T ss_pred h
Confidence 4
No 177
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.51 E-value=2.3 Score=48.88 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=110.6
Q ss_pred HhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHH
Q 002596 700 ARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGR 778 (902)
Q Consensus 700 ~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~ 778 (902)
.++.+++|.+.+..... ....|.+-..+|..+..+.+.+ +.|.++.+++.|++.++.++ ..++-.+..++--
T Consensus 863 RfF~~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D---~~v~vstl~~i~~ 935 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD---VIVRVSTLRTIPM 935 (1030)
T ss_pred HHHHhhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc---cchhhhHhhhhhH
Confidence 45678899999888733 3478899999999998888754 78999999999999999886 6777778888888
Q ss_pred HhhhcCCccCcChHHHHHHHHHhccCCCC--cHHHHHHHHHHHHHHHcCc-hhhhhhHHHHhhHhhcccc
Q 002596 779 LAWVCPELVSPHMEHFMQPWCIALSMIRD--DTEKEDAFRGLCAMVKANP-SGALSSLVFMCRAIASWHE 845 (902)
Q Consensus 779 l~~~~~~~~~~~l~~~l~~~~~~l~~~~d--~~e~~~~~~~l~~li~~~p-~~~~~~l~~i~~~i~~~~~ 845 (902)
+....+....-|++.+++.++..=...+. ...|..+.++|-.+-+..| ..+.+.-+.+++++...-+
T Consensus 936 ~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 936 LLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred HHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 88888888888999999998864333222 3568899999999999766 5666888888888866443
No 178
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.48 E-value=0.2 Score=48.47 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=63.7
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCC--CChHHHHHHHHHHHhhHHHHhhhhcCCc
Q 002596 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (902)
Q Consensus 395 ~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 472 (902)
.+.+..+. .-.|..+..+||++-..+ -+|.+.+.|.| .+|.||.-|+.+||.++.
T Consensus 193 ~~~l~~~S---alfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------- 249 (289)
T KOG0567|consen 193 IDGLADDS---ALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------- 249 (289)
T ss_pred HHhcccch---HHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------
Confidence 33444444 778888889999886533 35666666654 688999999999998775
Q ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 473 ~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
+..++.|.+.+.|+.+.|++.|..+|....-.
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 25567777888899899999998888765443
No 179
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.1 Score=57.03 Aligned_cols=204 Identities=17% Similarity=0.183 Sum_probs=125.3
Q ss_pred hhhccCCHhHHHHHHHHHhhhhh-----cCChHHHHHHHHHHHHHHhhc-CcCchHHHH-----HHHHHHhccCChhhhh
Q 002596 81 TAYKSMSPSNQQYIKSELLPCLG-----AADRHIRSTVGTIVSVVVQLG-GIAGWLELL-----QALVTCLDSNDINHME 149 (902)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~-----~~~~~vr~~~a~~l~~i~~~~-~~~~w~~ll-----~~L~~~l~~~~~~~r~ 149 (902)
+.|...+-+..+.|.+-+++.+- .+...+-...-.+++..+... -...-.+++ |-|+..++-.|..+|-
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~Vrs 192 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRS 192 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhh
Confidence 46887777777777777777542 122233333334555554332 223334443 5567778888999999
Q ss_pred HHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh----cccchhhHHhHHHHHHH
Q 002596 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI----MLMPSALFVSMDQYLQG 225 (902)
Q Consensus 150 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~----~~~~~~~~~~~~~~l~~ 225 (902)
.|+..+.....-..+.... .-.++.++.=+..+..+|.++-+.||..|+.-+.... +.+|+.... .++..
T Consensus 193 nAa~lf~~~fP~~dpd~~~---e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~---~ll~k 266 (1005)
T KOG1949|consen 193 NAALLFVEAFPIRDPDLHA---EEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILI---DLLKK 266 (1005)
T ss_pred hHHHHHHHhccCCCCCccH---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHH---HHHHH
Confidence 9988775544322221100 0001233444556888999999999998876555443 445554322 22444
Q ss_pred HHH-hhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 226 LFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 226 l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
++. +..|+..+||..+++++..++.+.-.+ +.+..+++.+-..+.|..+.||..+.+.+..+-..
T Consensus 267 I~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 267 ITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 443 345677799999999999988653332 56677777666678888888998888877666433
No 180
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.44 E-value=0.053 Score=50.55 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhh-cC---cCchHHHHHHH------------HHHhccCChhhhhHHHHHHHHHHhhchhcccc--C
Q 002596 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLDS--D 169 (902)
Q Consensus 108 ~vr~~~a~~l~~i~~~-~~---~~~w~~ll~~L------------~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~--~ 169 (902)
.||..+..++..+++. ++ .++|+.++|.- .-.+.|+++.+|.+|+.++..+.+.....+.. +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3789999999999988 42 47899988764 33456778899999999999999987654321 1
Q ss_pred C---CCCCC-------cchhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHhcccchh-h-HHhHHHHHHHHHHhhCCCCHH
Q 002596 170 V---PGLAE-------CPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPSA-L-FVSMDQYLQGLFLLSNDPSAE 236 (902)
Q Consensus 170 ~---~~~~~-------~~~~~l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~~-~-~~~~~~~l~~l~~~~~~~~~~ 236 (902)
. .+-|- ..+.++-..|...++.+ +..+....++|+..++..-|=. + ...+..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 11111 11233333455566665 7788889999999998765511 1 233455566777777778889
Q ss_pred HHHHHHHHHHHHHhhCh
Q 002596 237 VRKLVCAAFNLLIEVRP 253 (902)
Q Consensus 237 vr~~~~~~l~~l~~~~~ 253 (902)
++..++.++..+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.27 Score=56.63 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHhhccCC-CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 483 (902)
.++|--|.+.|+.+..+..-.-...+ ..++...+..++| +.|..|.=.|-|||++=+.+...- -...-...-..
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar----w~G~r~~Ahek 646 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR----WSGRRDNAHEK 646 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh----hccccccHHHH
Confidence 58899999999999988653322222 2366677788888 489999999999999977654321 11111234455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 002596 484 LLKRILDTNKRVQEAACSAFATLEEEA 510 (902)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~ 510 (902)
+...+.|+.++||.+|..||++|+...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 666788999999999999999999864
No 182
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.34 E-value=0.079 Score=44.88 Aligned_cols=79 Identities=11% Similarity=0.255 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHH
Q 002596 675 DASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLC 753 (902)
Q Consensus 675 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~ 753 (902)
.+...|..++..++.+.+.+++.+.++.++++-.+...+..+ +.+..|+.+...+....+ +++.|.+++++-.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~------~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP------ELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh------hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 566778889999999999888999999999999998888765 789999999999998886 5688999998888
Q ss_pred HHHhhc
Q 002596 754 LVPILK 759 (902)
Q Consensus 754 l~~~l~ 759 (902)
+++.+.
T Consensus 101 l~~~~~ 106 (107)
T PF08064_consen 101 LLPLWD 106 (107)
T ss_pred HHHhcc
Confidence 877653
No 183
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=3.1 Score=48.23 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=100.8
Q ss_pred HHhcCCChHHHHHHHHHHHH---HHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhh-hh
Q 002596 670 QCCMDDASDVRQSAFALLGD---LARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI-SP 745 (902)
Q Consensus 670 ~~~~~~~~~vr~~a~~~l~~---l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~-~~ 745 (902)
..+++++-.+|-.++.++.. +.....+.+.|.+.+.+|.++.++... ++-+-+.|+.++-.++.++|+-+ ..
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k----~~L~v~~a~~~i~~m~~~sgDFv~sR 885 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCK----DPLIVQRAFSCIEQMGKYSGDFVASR 885 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcC----chHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34567777888888887765 444556789999999999999999887 67888999999999998888643 34
Q ss_pred HHHHHHHHHHHhhcCCh--hhhhhHHH-HHHHHH-HHHhhhcCCcc------CcChHHHHHHHHHhccCCCCcHHHHHHH
Q 002596 746 IVMTVVLCLVPILKHSE--ELNKSLIE-NSAITL-GRLAWVCPELV------SPHMEHFMQPWCIALSMIRDDTEKEDAF 815 (902)
Q Consensus 746 ~~~~il~~l~~~l~~~~--~~~~~~~~-~~~~~l-~~l~~~~~~~~------~~~l~~~l~~~~~~l~~~~d~~e~~~~~ 815 (902)
++..+++.+-..+.+.. ...+..+. .+.-=+ -+++...+..+ ...++.+.....-.+....+..-...++
T Consensus 886 ~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~ 965 (1014)
T KOG4524|consen 886 FLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIAR 965 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHH
Confidence 55666666554443321 01122222 221112 12222222221 1235566666666666666655566788
Q ss_pred HHHHHHHHcCch-hhhhhHHHHh
Q 002596 816 RGLCAMVKANPS-GALSSLVFMC 837 (902)
Q Consensus 816 ~~l~~li~~~p~-~~~~~l~~i~ 837 (902)
.+|..++...++ .+.++.++..
T Consensus 966 s~F~~~V~~ekp~~i~~~~~~lh 988 (1014)
T KOG4524|consen 966 SCFLDLVPVEKPQRISSMSLRLH 988 (1014)
T ss_pred HHHHHHhccCCCcccchhhhhcC
Confidence 888878877553 3334444444
No 184
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=2.8 Score=47.29 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHhcc-----------hhhhhhhH----
Q 002596 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGC-----------IKGLYPHL---- 431 (902)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~-----------~~~~~~~l---- 431 (902)
|+.|+..|..+++.+...+...-++.+.+.+. +..+ ...-..++..+..+...- .+.+...+
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D--~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~f 117 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMD--PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQF 117 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCC--HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHH
Confidence 89999999999999966554444444444443 3222 555666666655544321 01111111
Q ss_pred ---HHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 432 ---SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 432 ---~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
+..+..++..+...+-.||..+...++.+...-+.... .....++.-+..++..+.|....+|-.+...|..+..
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q--~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ--DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH--HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 23567788888888999999999999988775442110 0111233455667777889889999999999998888
Q ss_pred Hhccc-chHhHHHHHHHHHHHHhcc
Q 002596 509 EAAEE-LAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 509 ~~~~~-~~p~l~~i~~~l~~~l~~~ 532 (902)
.++.. -.-.++.++.+|+.++...
T Consensus 196 ~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 196 DNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhc
Confidence 76431 1124578889999988754
No 185
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.19 E-value=0.46 Score=51.05 Aligned_cols=174 Identities=17% Similarity=0.289 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhc----CCCHHHHHHHHHHHHHhhccCCchh
Q 002596 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK----DTDDDVALEACEFWHSYFEAQLPHE 297 (902)
Q Consensus 222 ~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~----~~~~~v~~~al~~l~~l~~~~~~~~ 297 (902)
|...+...+.+.++..|..|++.|.. .+ -+...++-++.++-+... ..+-..-...+....++.+++ .-
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T----Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np--~i 280 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET----DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP--NI 280 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc----Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC--cc
Confidence 34444454445778889988888753 11 111222222323222211 123444455566666676663 34
Q ss_pred hHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHH
Q 002596 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (902)
Q Consensus 298 ~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~ 377 (902)
.+.||+..++|.++.++....-. .+| +.++.|.+|..|+.++..
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~------------------~~p------------------~~dnhwaLRDfAA~ll~~ 324 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLC------------------LRP------------------ELDNHWALRDFAARLLAQ 324 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhcc------------------CCc------------------cccchHHHHHHHHHHHHH
Confidence 57899999999998877632100 000 122479999999999999
Q ss_pred HHhhcCc---chhhhhHHHHHHhhccC-CCCchHHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhh
Q 002596 378 LSNVFGD---EILPTLMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIP 440 (902)
Q Consensus 378 l~~~~~~---~~~~~l~~~l~~~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~ 440 (902)
++..+++ .+-+.+...+.+.+.+. .+ |...++++..|..+.....+. +.+.+......+-+
T Consensus 325 i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~--~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~ 390 (576)
T KOG2549|consen 325 ICKNFSTLYNNLQPRITRTLSKALLDNKKP--LSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQS 390 (576)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhcCCCCC--chhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhh
Confidence 9999986 34456666666666653 22 999999999998887633322 22444444333333
No 186
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=1.5 Score=44.88 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=97.7
Q ss_pred CChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH-H
Q 002596 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-Q 221 (902)
Q Consensus 143 ~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~ 221 (902)
.+..-++.|+.-|..+++.+....+-. . -..++.++..+++++..+|..|...+++.+...|......+. .
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~-------~-~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~ 166 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI-------S-LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG 166 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh-------h-ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc
Confidence 466889999999998888765421100 1 233455556999999999999999999999998875444443 3
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHHHhhChhhhhhhHH-HHHHHHHhhhcC--CCHHHHHHHHHHHHHhhcc
Q 002596 222 YLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 222 ~l~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~--~~~~v~~~al~~l~~l~~~ 292 (902)
.++.|+..+. +++..+|..++.++..++.+.+.-...++. .=...+..++++ .+...+..++.++..+.+.
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 5677777654 456678999999999999887765444332 012334455555 3455667778777777654
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=0.28 Score=56.46 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhc--Cc--chhhhhHHHHHHhhccC-CCCchHHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHhh
Q 002596 367 LRKCSAAALDVLSNVF--GD--EILPTLMPVIQAKLSAS-GDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIP 440 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~--~~--~~~~~l~~~l~~~l~~~-~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~i~~~l~~ 440 (902)
.|..|+-.|..+...+ |. .+-..++.++...++++ + |..|.=.+.+||.+=+...+. ..-.-......++.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~---pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPE---PLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCcc---HHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 5888999999999888 33 23467788888889884 6 999999999999998766532 11111224556788
Q ss_pred ccCCCChHHHHHHHHHHHhhHHHHh----hh-------hcCC----cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002596 441 LLDDKFPLIRSISCWTLSRFSKFIV----QD-------IGHQ----NGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (902)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~~~~~~~----~~-------~~~~----~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~ 505 (902)
.|.|+.|.||.+|..+||.|..... +. +.-+ ....+.....-.++..++|.++-||.....+|..
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 8999999999999999999987531 10 0000 0112222222367777888889999888888887
Q ss_pred HHHH
Q 002596 506 LEEE 509 (902)
Q Consensus 506 l~~~ 509 (902)
+...
T Consensus 730 ~~~g 733 (1387)
T KOG1517|consen 730 FVVG 733 (1387)
T ss_pred HHHh
Confidence 7654
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.09 E-value=0.93 Score=47.14 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=86.2
Q ss_pred HHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhcc-ccCC
Q 002596 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL-DSDV 170 (902)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~-~~~~ 170 (902)
..+...+++++.+++..+|..+-.+++..+-.+. ..-.+.++.+.+.++.++..++..|++++..+.-.++... ....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 4444555589999999999999999998877652 3335667777888877788999999999988877665432 2111
Q ss_pred CCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002596 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (902)
.+..+.....+...+..++.+.++++|..|+..+..+.-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 0000122357888899999999999999999999998643
No 189
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=96.02 E-value=0.57 Score=52.76 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh---hhhhhH---HHHHHHHHHHhhcCChhhhhhHHHHHHHH
Q 002596 702 LSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR---QEISPI---VMTVVLCLVPILKHSEELNKSLIENSAIT 775 (902)
Q Consensus 702 ~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~---~~~~~~---~~~il~~l~~~l~~~~~~~~~~~~~~~~~ 775 (902)
-+.++..-...+..+. +..+-++++-+|-.+..... ..+..- -+..++.++.++...+ ..+...++.+
T Consensus 516 ~p~vVr~Yl~Ll~~s~---n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~---~~vv~s~a~~ 589 (717)
T KOG1048|consen 516 HPSVVRPYLLLLALSK---NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD---SDVVRSAAGA 589 (717)
T ss_pred cHHHHHHHHHHHHHhc---chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC---chHHHHHHHH
Confidence 3455554333443222 45677788778777754332 111111 1334567778887764 6888888999
Q ss_pred HHHHhhh--cCCccCcChHHHHHHHHHhccCCCC-----cHHHHHHHHHHHHHHHcCchhhh-----hhHHHHhhHhhcc
Q 002596 776 LGRLAWV--CPELVSPHMEHFMQPWCIALSMIRD-----DTEKEDAFRGLCAMVKANPSGAL-----SSLVFMCRAIASW 843 (902)
Q Consensus 776 l~~l~~~--~~~~~~~~l~~~l~~~~~~l~~~~d-----~~e~~~~~~~l~~li~~~p~~~~-----~~l~~i~~~i~~~ 843 (902)
+..+... +.+.+. ...++.++..||.... ++--..++..+.+++..++.... ..++.++.+-.++
T Consensus 590 LrNls~d~rnk~lig---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 590 LRNLSRDIRNKELIG---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred HhhhccCchhhhhhh---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 9888863 233332 3467888888887554 34455778889999988775432 6777787777774
Q ss_pred c
Q 002596 844 H 844 (902)
Q Consensus 844 ~ 844 (902)
.
T Consensus 667 ~ 667 (717)
T KOG1048|consen 667 H 667 (717)
T ss_pred C
Confidence 3
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.96 E-value=0.13 Score=56.85 Aligned_cols=190 Identities=17% Similarity=0.217 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCC
Q 002596 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (902)
Q Consensus 259 ~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~ 338 (902)
|-..+++.+++.....|..+|..-++-+..++++ ..+. .+-++++|.+...+..++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~--~~~d~I~phv~~G~~DTn-------------------- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQ--ILNDQIFPHVALGFLDTN-------------------- 382 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHH--hhcchhHHHHHhhcccCC--------------------
Confidence 3445777777778888888888777766666554 1111 123456666655554321
Q ss_pred CCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchh-hhhHHHHHHhhccCCCCchHHHHHHHHHHH
Q 002596 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL-PTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (902)
Q Consensus 339 i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~ 417 (902)
-++|.....++..++..++...+ ..++..+...-.+++ ...|--...|+|
T Consensus 383 --------------------------~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlg 433 (690)
T KOG1243|consen 383 --------------------------ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLG 433 (690)
T ss_pred --------------------------HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeec
Confidence 14788888888888888877533 456666655555555 566666667777
Q ss_pred HHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHH
Q 002596 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (902)
Q Consensus 418 ~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~ 497 (902)
.++......... ..+.......+.||-+.-|.++.+.+..-.+.+. ......+++|.+.....|+++.||.
T Consensus 434 ki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 434 KIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred ccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhh
Confidence 777654322211 0122234447889999999999998877666653 4566778888888888899999999
Q ss_pred HHHHHHHHHHHHh
Q 002596 498 AACSAFATLEEEA 510 (902)
Q Consensus 498 ~a~~al~~l~~~~ 510 (902)
.|..++..+.+..
T Consensus 505 ~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 505 TAEKAIRQFLEKL 517 (690)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998887654
No 191
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.78 Score=56.00 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=88.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccch-hhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh
Q 002596 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 257 (902)
+.-+..+++-+...++..|..|+..+.+++..... .....++.+.....++..|.+..||.....++..+.....+.+.
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456677888888999999999999999865432 22333455555566677889999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 002596 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (902)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~ 290 (902)
||++.+++..+-...|.+..+...|...+...-
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 999999999998888888888777776665543
No 192
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.93 E-value=0.43 Score=53.24 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=97.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHH
Q 002596 600 FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDV 679 (902)
Q Consensus 600 f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 679 (902)
-..|.+.+++.+..+++... .++...+.++-+..|.+.+..+ .+.. .++|+|+.++++.+..+
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~-------------~~~~~l~i~e~mdlL~~Kt~~e--~~~~--~IlplL~~S~~~~~~~i 405 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASD-------------PKQALLFILENMDLLKEKTPPE--EVKE--KILPLLYRSLEDSDVQI 405 (700)
T ss_pred hhhhhhhhhHHHHHHhccCC-------------cccchhhHHhhHHHHHhhCChH--HHHH--HHHHHHHHHhcCcchhh
Confidence 34466777777766665311 3455666677777777766543 2233 59999999999999999
Q ss_pred HHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhc
Q 002596 680 RQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILK 759 (902)
Q Consensus 680 r~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~ 759 (902)
...++..+..+++...-.+ .-..++|.+........ +..|+.|++-|+|.++...... . +++.+.+++.
T Consensus 406 Q~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt---~~~vkvn~L~c~~~l~q~lD~~--~----v~d~~lpi~~ 474 (700)
T KOG2137|consen 406 QELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTT---NLYVKVNVLPCLAGLIQRLDKA--A----VLDELLPILK 474 (700)
T ss_pred HHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhccc---chHHHHHHHHHHHHHHHHHHHH--H----hHHHHHHHHH
Confidence 9999999999888875222 12356666665532221 6789999999999999655421 1 2233333333
Q ss_pred CChhhhhhHHHHHHHHHHHHhhhcCC
Q 002596 760 HSEELNKSLIENSAITLGRLAWVCPE 785 (902)
Q Consensus 760 ~~~~~~~~~~~~~~~~l~~l~~~~~~ 785 (902)
+-...+..+.-.......+++...+.
T Consensus 475 ~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 475 CIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 22111345555555555666655544
No 193
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.83 E-value=0.078 Score=48.48 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=76.1
Q ss_pred hhhhHHHHHHHHhhccC------------------CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHh
Q 002596 427 LYPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (902)
Q Consensus 427 ~~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 488 (902)
+.++++.++|.++..+. |..-.+|.+|..|+..+.+.+.. .-.+..++..+..++
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhc
Confidence 45788889999887654 55678999999999988875532 223667789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHh
Q 002596 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (902)
Q Consensus 489 ~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~ 530 (902)
.| +..|+.-|+..+..++...+..+.+.++.+.+.+...++
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99 899999999999999988888888888888888888775
No 194
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=4.1 Score=45.33 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHH----HHhhhhhcCCh
Q 002596 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS----ELLPCLGAADR 107 (902)
Q Consensus 32 ~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~----~ll~~l~~~~~ 107 (902)
+|+-+++.|-++.+ ..+..-|. ..+.++|..|+.++-+..--.-+....+....+.+ .+...|.++-+
T Consensus 163 ~~qgVeeml~rL~~-----p~l~R~L~---a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p 234 (1005)
T KOG1949|consen 163 VRQGVEEMLYRLYK-----PILWRGLK---ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYP 234 (1005)
T ss_pred HhhhHHHHHHHHHh-----HHHHHhhc---cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34445555555543 22333332 56789999999988655433222333333333322 34557789999
Q ss_pred HHHHHHHHHHHHHHhhc----CcCchHHHHHHHHHHhccC-ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002596 108 HIRSTVGTIVSVVVQLG----GIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (902)
Q Consensus 108 ~vr~~~a~~l~~i~~~~----~~~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (902)
.||..+..-+..+.... |+....+++..+..-+..+ ...+|-+.+..|..+...-.. + ..++.++
T Consensus 235 ~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s----h------~~le~~L 304 (1005)
T KOG1949|consen 235 MVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS----H------PLLEQLL 304 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc----h------hHHHHHH
Confidence 99999888777777653 3444455665555544433 457888888777666543211 1 3467888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002596 183 PRLLQFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (902)
|.+-..+.|.+..||.++...+..+-
T Consensus 305 pal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 305 PALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HhcchhhhccchhHHHHHHHHHHHHH
Confidence 88888889999999999999887753
No 195
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.80 E-value=0.19 Score=42.27 Aligned_cols=77 Identities=16% Similarity=0.313 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh-hhhhhHHHHHHHHH
Q 002596 676 ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR-QEISPIVMTVVLCL 754 (902)
Q Consensus 676 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~-~~~~~~~~~il~~l 754 (902)
+...|..++..++.+.+.+++.+..+.++++-.+...+..+ +.|..|+.+...+....+ +++.|.+++++..+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~------eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP------ELRSLALRCWHVLIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44568889999999999999999999999999999998865 799999999999998886 55788888888777
Q ss_pred HHhh
Q 002596 755 VPIL 758 (902)
Q Consensus 755 ~~~l 758 (902)
.+.+
T Consensus 102 ~~~~ 105 (107)
T smart00802 102 LPLW 105 (107)
T ss_pred HHhc
Confidence 6654
No 196
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.78 E-value=0.22 Score=42.23 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHhHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 002596 216 FVSMDQYLQGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 216 ~~~~~~~l~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~ 291 (902)
.+++=.++..+-..+.| .+...++.++.++..+++...+.+....++++-.+...+..+ +++..|+++|..+.+
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 34443444444444443 456789999999999999888888888888877666665543 789999999999988
Q ss_pred cCCchhhHHhhhhhhHHHHHhhc
Q 002596 292 AQLPHENLKEFLPRLVPVLLSNM 314 (902)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~ll~~l 314 (902)
.- ..+.+.|.++.++-.+++..
T Consensus 84 ~L-~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 TL-DEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HC-CHHHHHHHHHHHHHHHHHhc
Confidence 72 34677888888877776543
No 197
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.71 E-value=0.24 Score=52.25 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=95.4
Q ss_pred hhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
.+...++..+.. .+.+.+...|..++..|..=. .-..+.||+-.++.--+...-+.+-..-...+.+..++...
T Consensus 174 ~Elq~yf~~It~----a~~~~~~~~r~~aL~sL~tD~--gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 174 KELQLYFEEITE----ALVGSNEEKRREALQSLRTDP--GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHHH----HHhCCCHHHHHHHHHHhccCC--CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 344444444444 333456777777777654211 01122233322222111111111344455566777777776
Q ss_pred CCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHH
Q 002596 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (902)
Q Consensus 293 ~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~ 372 (902)
+ .-.+.+|+..++|.++.++....-. ... + ..+.|.+|..|+
T Consensus 248 ~--~l~le~Ylh~Lip~vltclv~~~l~-------------------------------~~~--~---~~~h~~LRd~AA 289 (343)
T cd08050 248 P--NLHLEPYLHQLIPSVLTCLVAKQLC-------------------------------SRP--P---DDNHWALRDYAA 289 (343)
T ss_pred C--CCchHHhHHHHHHHHHHHhhhHhhc-------------------------------CCC--C---CchHHHHHHHHH
Confidence 3 3357899999999999887643210 000 0 124699999999
Q ss_pred HHHHHHHhhcCc---chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHh
Q 002596 373 AALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (902)
Q Consensus 373 ~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (902)
.++..++..++. .+.+.+...+.+.+.++.. ....+++|+..|+.+..
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~-~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK-PLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC-CcchhhHHHHHHHHhCc
Confidence 999999999975 4566777666666665431 14559999999888753
No 198
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.54 E-value=2 Score=48.11 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=143.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcCCC--hHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhH-
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN- 90 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~-~~~~p~--~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~- 90 (902)
.++.+.|...++.+.. +|-.....+.. |..+|. .+.+|-.+... ++.-+ ..++|. +.+.|..++...
T Consensus 239 ~el~~~l~k~l~~~~~-~rp~~~~l~~~~ff~D~~~~aLrfLD~l~~k----dn~qK---s~Flk~-Ls~~ip~fp~rv~ 309 (700)
T KOG2137|consen 239 SELRESLKKLLNGDSA-VRPTLDLLLSIPFFSDPGLKALRFLDDLPQK----DNSQK---SSFLKG-LSKLIPTFPARVL 309 (700)
T ss_pred HHHHHHHHHHhcCCcc-cCcchhhhhcccccCCchhhhhhhccccccc----CcHHH---HHHHHH-HHHhhccCCHHHH
Confidence 5788888899999988 88843333333 334443 23344444331 22222 234544 677788887754
Q ss_pred HHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCCh-hhhhHHHHHHHHHHhhchhcccc
Q 002596 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDS 168 (902)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~ 168 (902)
...+...+...|.+. ..--..--++-.|+..... ..-+.++|.|...++..++ ...-.-+.=+..|.+..+.
T Consensus 310 ~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~---- 383 (700)
T KOG2137|consen 310 FQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP---- 383 (700)
T ss_pred HHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh----
Confidence 345555555555322 1111111123333333322 2346778888887774332 2222222222223333322
Q ss_pred CCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH
Q 002596 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNL 247 (902)
Q Consensus 169 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~ 247 (902)
+...+.++|.|+..+.+.+..++..+++.+..+.+.++-.+.. +.+++.+..+. ...+..++..++.|+..
T Consensus 384 ------e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~~~ 455 (700)
T KOG2137|consen 384 ------EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCLAG 455 (700)
T ss_pred ------HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHHHH
Confidence 2355889999999999999999999999999999887633222 23466666543 45677899999999999
Q ss_pred HHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 002596 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (902)
Q Consensus 248 l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l 289 (902)
+++..... ..++. +..+.++.+..|+.+....+.....+
T Consensus 456 l~q~lD~~--~v~d~-~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 456 LIQRLDKA--AVLDE-LLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHH--HhHHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 88544332 22333 33455666677777766665554443
No 199
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.43 E-value=0.5 Score=48.55 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=108.6
Q ss_pred hHHHHHHH-HHHHHHHh-cc-hhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcC-CcchhhHHHHH
Q 002596 406 WKDREAAV-LALGAIAE-GC-IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH-QNGREQFEKVL 481 (902)
Q Consensus 406 ~~~r~~a~-~~l~~l~~-~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~il 481 (902)
|+...+.. .++.-+.. .. ...+..+++-++|.++..++|.++.+|..+|.++..+...+...... -......+-+.
T Consensus 89 WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 89 WKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFE 168 (282)
T ss_pred cccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHH
Confidence 66554322 33333333 22 24567899999999999999999999999999999998866532100 00122244455
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHHHHHh----cccchHhHHHHHHH-HHHHHhccc----hhhHHHHHHHH
Q 002596 482 MGLLKRIL--------DTNKRVQEAACSAFATLEEEA----AEELAPRLEIILQH-LMMAFGKYQ----RRNLRIVYDAI 544 (902)
Q Consensus 482 ~~l~~~l~--------d~~~~v~~~a~~al~~l~~~~----~~~~~p~l~~i~~~-l~~~l~~~~----~~~~~~~~~al 544 (902)
+++..++. +.+..+-..+..++..++... ...-...+..++.. ++..+.... .+.....++.+
T Consensus 169 ~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l 248 (282)
T PF10521_consen 169 DALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQL 248 (282)
T ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHH
Confidence 55556665 556777788888888887653 11222333334332 444444332 33455778889
Q ss_pred HHHHHHhcccCCchhhhhhhhHHHHHHHhcC
Q 002596 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQL 575 (902)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 575 (902)
..+++.+|.... .|+..+++.+.+.+++.
T Consensus 249 ~~~i~~lGi~~~--~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 249 PPIIDELGISSV--KHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhccHHH--HHHHHHHHHHHHHhcCC
Confidence 999999998877 89999999888876653
No 200
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.39 E-value=4 Score=42.71 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=51.1
Q ss_pred HHHHHHhhccCCC-ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 433 EIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 433 ~i~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
+++..+++.|+.. +|.+-..||.=+|++.++.+.- ...++ ..=..++..+..++++||-.|..|+..+..+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 3666777777654 4888899999999999988742 11111 1234556778889999999999999887643
No 201
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.28 E-value=5.6 Score=43.35 Aligned_cols=170 Identities=18% Similarity=0.156 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002596 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (902)
Q Consensus 106 ~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (902)
..--|+.++.+............+-.++..++.+=.++...- ..+..+..+++...+ .+-.| +..+..++..+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~d--Ril~fl~~f~~Y~~~---~dpeg--~~~V~~~~~h~ 96 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPD--RILSFLKRFFEYDMP---DDPEG--EELVAGTFYHL 96 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHH--HHHHHHHHHHHhcCC---CChhh--hHHHHHHHHHH
Confidence 445566665555444333322233455555655555443322 245555555552211 11111 34567778888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHH
Q 002596 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (902)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~ 265 (902)
+.++.+++..||..+++.+..++....+-....++.++..+...+-|.++.||..|+.+|..+-+..... .+....++.
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~~~n~l~ 175 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENRIVNLLK 175 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHHHHHHHH
Confidence 8899999999999999999988876544233334455666666666888999999999999887533221 112222222
Q ss_pred HHHhhhcCCCHHHHHHHHHH
Q 002596 266 YMLQVNKDTDDDVALEACEF 285 (902)
Q Consensus 266 ~~~~~~~~~~~~v~~~al~~ 285 (902)
.+ .-.|+..+||..|+--
T Consensus 176 ~~--vqnDPS~EVRr~alln 193 (885)
T COG5218 176 DI--VQNDPSDEVRRLALLN 193 (885)
T ss_pred HH--HhcCcHHHHHHHHHHH
Confidence 22 1246777898887643
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.24 E-value=1.6 Score=47.48 Aligned_cols=229 Identities=17% Similarity=0.197 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChH----HHHHHHhhccCCCCHHHHHHH----HHHHHHHHHhhhcc
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDFN----NYLAFILARAEGKSVEIRQAA----GLLLKNNLRTAYKS 85 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~-~~~p~~~----~~l~~il~~~~~~~~~~R~~a----~~~Lk~~i~~~w~~ 85 (902)
.-+.+++....|+|.. .|......|.++ .+.++.- ..+..++.+= .....++.+ .-.+...++..-..
T Consensus 133 ~fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~f--i~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRF--IYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHH--HHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--hcCcccccCHHHHHHHHHHHHhccCCC
Confidence 3466677777788888 888888888773 4444422 2222232200 000011111 11222222222224
Q ss_pred CCHhHHHHHHHHHhhhhhcC-ChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchh
Q 002596 86 MSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (902)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~-~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~ 164 (902)
+.++.+..+.+.++.+.+.+ -......+..++..++.++ +..-..++..+....--.++.-.-.-+.-+..+++.++.
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH
Confidence 67788888888888888766 4455778888888888776 333344555555555444443333456666666665543
Q ss_pred ccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH--hcccchhhHHhHHHHHHHHHHh----hC-CCCHHH
Q 002596 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF--IMLMPSALFVSMDQYLQGLFLL----SN-DPSAEV 237 (902)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~--~~~~~~~~~~~~~~~l~~l~~~----~~-~~~~~v 237 (902)
.- +......++..+..++++++..|-..|+..+++- +... ..+-..+++.++.. .. +-+..+
T Consensus 289 ~~-------f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li----~~~~~~i~p~i~~~L~~~~~~HWn~~V 357 (409)
T PF01603_consen 289 EE-------FQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI----SQNSRVILPIIFPALYRNSKNHWNQTV 357 (409)
T ss_dssp HH-------HHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH----HCTHHHHHHHHHHHHSSTTSS-SSTTH
T ss_pred HH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH----HhChHHHHHHHHHHHHHHHHHHhhHHH
Confidence 21 1234567888888999999999999998877542 2221 22223344444443 32 346789
Q ss_pred HHHHHHHHHHHHhhChhhhhh
Q 002596 238 RKLVCAAFNLLIEVRPSFLEP 258 (902)
Q Consensus 238 r~~~~~~l~~l~~~~~~~~~~ 258 (902)
|..+..++..+.+..++.+..
T Consensus 358 r~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 358 RNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999988887654
No 203
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.23 E-value=0.31 Score=50.00 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----chH--hHHHHHHHHHHHHh--------ccchhhH
Q 002596 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE----LAP--RLEIILQHLMMAFG--------KYQRRNL 537 (902)
Q Consensus 472 ~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~----~~p--~l~~i~~~l~~~l~--------~~~~~~~ 537 (902)
...+++.-++|.++..++|.++.+|..+|.++..|++.+... +.. ..+-+.+.+..++- +......
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 467788899999999999999999999999999999987433 222 23444445555554 2233456
Q ss_pred HHHHHHHHHHHHHhcccCC--chhhhhhhh-HHHHHHHhcCCC-CCcch-hhHHHHHHHHHHHhccccccccHHHHHHHH
Q 002596 538 RIVYDAIGTLADAVGFELN--QPVYLDILM-PPLIAKWQQLPN-SDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCI 612 (902)
Q Consensus 538 ~~~~~al~~l~~~~~~~~~--~~~~~~~ll-~~l~~~l~~~~~-~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~ 612 (902)
..++.|+..++......-. ....+..++ ..+++.+..... ..+.+ ...++.+..+...+|.....|+..+++.+.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6888999888876432111 112222222 224433333221 12333 567888999999999999999999999887
Q ss_pred HHHHH
Q 002596 613 NIIQT 617 (902)
Q Consensus 613 ~~l~~ 617 (902)
+.+.+
T Consensus 272 ~~l~n 276 (282)
T PF10521_consen 272 QILEN 276 (282)
T ss_pred HHhcC
Confidence 76653
No 204
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.47 Score=49.23 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh-hChhhhhhhH
Q 002596 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLEPHL 260 (902)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~-~~~~~~~~~l 260 (902)
+..++.-+.+.+..+|..|+.-+..++...|..+..+...+++.+.....|.+..+|....+.+..++. ..++.+.+++
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 456677788999999999999999999887888887888888888888889999999999999987554 4555578899
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 261 RNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 261 ~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
.-+++++..+|.+.-++++..++.|+.-+.+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999888776
No 205
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.05 E-value=7.3 Score=43.41 Aligned_cols=288 Identities=13% Similarity=0.078 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCC-hhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHH
Q 002596 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (902)
Q Consensus 108 ~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~-~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (902)
.-|-.++.-++......+.+.-+++......++..+. .+.|+.++..|..+++.-.... ...=..++
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~------------~~~R~~fF 72 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS------------GLMRAEFF 72 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc------------HHHHHHHH
Confidence 3466666666666666655555555555555565553 4799999999988887543311 11111233
Q ss_pred HHhcC----CCHHHHHHHHHHHHHHhccc---chhhHHhHHHHHHHHHHhhC--------------------CCCHHHHH
Q 002596 187 QFFQS----PHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSN--------------------DPSAEVRK 239 (902)
Q Consensus 187 ~~l~~----~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~--------------------~~~~~vr~ 239 (902)
+.+.+ ++-..|..|+..|+.=...+ ..++.+.+..++..+++... +.+...-.
T Consensus 73 ~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 73 RDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 33333 24456777777776543332 23345555566665552210 01223344
Q ss_pred HHHHHHHHHHhhChhhhh-hhHHHHHHHHHhhh-cCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCC
Q 002596 240 LVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVN-KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (902)
Q Consensus 240 ~~~~~l~~l~~~~~~~~~-~~l~~i~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 317 (902)
..+..+..+++.....+. ..+..++..++... +...++.-..++.++.+++.+...+ ...++.++..|-......
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc
Confidence 556666666665554443 45556666555543 3333433467778887776652221 223344444432221110
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHh
Q 002596 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAK 397 (902)
Q Consensus 318 ~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~ 397 (902)
+..+.+-.++..|+. ...-...+..+...
T Consensus 230 ------------------------------------------------~l~~~~w~~m~nL~~---S~~g~~~i~~L~~i 258 (464)
T PF11864_consen 230 ------------------------------------------------SLCKPSWRTMRNLLK---SHLGHSAIRTLCDI 258 (464)
T ss_pred ------------------------------------------------ccchhHHHHHHHHHc---CccHHHHHHHHHHH
Confidence 122334455555553 22223334444444
Q ss_pred hccCC---CCchHHHHHHHHHHHHHHhcchhhhhh----hHHHHHHHHhhccCCCChHHHHHHHHHHHhhH
Q 002596 398 LSASG---DEAWKDREAAVLALGAIAEGCIKGLYP----HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 398 l~~~~---~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (902)
+.+++ ..+...-.+|+..++.+.-+.++.-.+ ....+++.+...++..++.|-...+.++.++.
T Consensus 259 L~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 259 LRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 52111 112666779999999888776432221 22348888999998888877777666666655
No 206
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.52 Score=50.54 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=87.7
Q ss_pred HHHHHhh-hhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhc-cCChhhhhHHHHHHHHHHhhchhccccCCC
Q 002596 94 IKSELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (902)
Q Consensus 94 i~~~ll~-~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~-~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (902)
+...++. ..+|.+..||+++..+++-++-.+ +++++...+.+. +.++.+|.+...+|+..|...+.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------- 619 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------- 619 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------
Confidence 3445556 477889999998887887776544 455555555554 56889999999999988875443
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCH
Q 002596 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (902)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (902)
+.-+..|-.+..|+..-||+.|+-+++-+.....+.+.+....+...+.+.+.+..+
T Consensus 620 -------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 -------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred -------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 233444555667888999999999998887666666777777777777766655433
No 207
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.96 E-value=0.39 Score=53.29 Aligned_cols=253 Identities=14% Similarity=0.124 Sum_probs=157.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHHHH
Q 002596 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (902)
Q Consensus 231 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~l 310 (902)
.-.+.+.+..-+..|...++..++.+. ...+++.++..+.-.+ -....+.-+..+.+.- .-.+|-..++|.+
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~l----d~~eyq~~i~p~l 335 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD--AASDFLTPLFKLGKDL----DEEEYQVRIIPVL 335 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc--cchhhhhHHHHhhhhc----cccccccchhhhH
Confidence 345667778888888877777776543 2345555555443332 0111111111111110 0112555566666
Q ss_pred HhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCc-chhhh
Q 002596 311 LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPT 389 (902)
Q Consensus 311 l~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~ 389 (902)
++.+...+. .+|..-.+-+......+.+ .+-..
T Consensus 336 ~kLF~~~Dr----------------------------------------------~iR~~LL~~i~~~i~~Lt~~~~~d~ 369 (690)
T KOG1243|consen 336 LKLFKSPDR----------------------------------------------QIRLLLLQYIEKYIDHLTKQILNDQ 369 (690)
T ss_pred HHHhcCcch----------------------------------------------HHHHHHHHhHHHHhhhcCHHhhcch
Confidence 655543221 3677777778888888865 45577
Q ss_pred hHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhc
Q 002596 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (902)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 469 (902)
++|.+...+.+.+ ...|+..+.++..++....+. ..=.+++.++-..-.|.++.+|...-.|+|+++.++....
T Consensus 370 I~phv~~G~~DTn---~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~- 443 (690)
T KOG1243|consen 370 IFPHVALGFLDTN---ATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV- 443 (690)
T ss_pred hHHHHHhhcccCC---HHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh-
Confidence 8899999999999 999999999999998866543 2223456666666669999999999999999998875321
Q ss_pred CCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 002596 470 HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 470 ~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~ 549 (902)
.-.-+..++...+.|+-..-|.++..++....+... ....-..|++.+.....+.+..++..+..++..+..
T Consensus 444 ------R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 444 ------RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ------hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 111223344456888877788888888776554331 122334566666666666666666666666665544
Q ss_pred Hh
Q 002596 550 AV 551 (902)
Q Consensus 550 ~~ 551 (902)
..
T Consensus 516 kl 517 (690)
T KOG1243|consen 516 KL 517 (690)
T ss_pred hh
Confidence 33
No 208
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.92 E-value=6.6 Score=42.23 Aligned_cols=317 Identities=15% Similarity=0.111 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhhcC---c-ch----hhhhHHHHHHhhcc----CCCCchHHHHHHHHHHHHHHhcch--hhhhh-hH
Q 002596 367 LRKCSAAALDVLSNVFG---D-EI----LPTLMPVIQAKLSA----SGDEAWKDREAAVLALGAIAEGCI--KGLYP-HL 431 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~---~-~~----~~~l~~~l~~~l~~----~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~l 431 (902)
-|..|...|...-+... + .. ++.+.+++..-+.+ .++..-+.-..|+.++|.+..... ..+.. ..
T Consensus 9 ~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~ 88 (372)
T PF12231_consen 9 SRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFA 88 (372)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHH
Confidence 36667777666555552 2 11 23344444443333 111125667788888887764322 22222 22
Q ss_pred HHHHHHHhhccCCCC--hHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Q 002596 432 SEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLE 507 (902)
Q Consensus 432 ~~i~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~~v~~~a~~al~~l~ 507 (902)
..++...+..+.+++ ..+...++|+++. ..++. ..........+-..+..+.+ ++..+-.....++.+++
T Consensus 89 ~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 89 SFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSP----KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCC----cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 236677777776543 3677778888764 12211 11222233333444445554 45777788899999999
Q ss_pred HHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHH
Q 002596 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLE 587 (902)
Q Consensus 508 ~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~ 587 (902)
...+..+..+...=++.++..+-+.....+..+......+...++.. .. +...+.+.++....
T Consensus 163 ~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~----~~---~s~~~~~~~~~~~~---------- 225 (372)
T PF12231_consen 163 SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN----KE---LSKSVLEDLQRSLE---------- 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh----HH---HHHHHHHHhccccc----------
Confidence 98877766554444444444443333344444443333333344432 11 11122222222110
Q ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhH---HhhhccchH
Q 002596 588 CFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGI---ESLVAQSNL 664 (902)
Q Consensus 588 ~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~---~~~~~~~~l 664 (902)
++ .|.+.+.+++...+... +--..+.++++.++.-+|... .+++. ..
T Consensus 226 ----------~~--~~~~~~~~~L~~mi~~~----------------~~~~~a~~iW~~~i~LL~~~~~~~w~~~n--~w 275 (372)
T PF12231_consen 226 ----------NG--KLIQLYCERLKEMIKSK----------------DEYKLAMQIWSVVILLLGSSRLDSWEHLN--EW 275 (372)
T ss_pred ----------cc--cHHHHHHHHHHHHHhCc----------------CCcchHHHHHHHHHHHhCCchhhccHhHh--HH
Confidence 11 23333444443333321 001125566777777776542 23333 47
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhchH---hhHHhHHHHHHHHHHhcCCCCCcc-chhHhhhHHHHHHHHH
Q 002596 665 RDMLLQCCMDDASDVRQSAFALLGDLARVCPV---HLQARLSDFLDIAAKQLNTPKLKE-TVSVANNACWAIGELA 736 (902)
Q Consensus 665 ~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~-~~~v~~~a~~alg~l~ 736 (902)
+.+...|+.+.++.+|..|+.+...++..... .....+.-++..+...++...... ...++..+...++.+.
T Consensus 276 L~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 276 LKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 88888999999999999999999988875432 112333444455555565543211 1156666666666554
No 209
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.81 E-value=6.2 Score=41.39 Aligned_cols=299 Identities=16% Similarity=0.146 Sum_probs=155.1
Q ss_pred HHhhhhhcCChHHHHHHHHHHHHHHhhcC----cCchHHHHHHHHHHhcc-CChhhhhHHHHHHHHHHhhchhccccCCC
Q 002596 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVP 171 (902)
Q Consensus 97 ~ll~~l~~~~~~vr~~~a~~l~~i~~~~~----~~~w~~ll~~L~~~l~~-~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (902)
..+..|...+..+-+..+.+++.++.... .....-....|...+++ .+++.+..+.+||..++..-.....- +.
T Consensus 118 ~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~-v~ 196 (442)
T KOG2759|consen 118 SFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF-VI 196 (442)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee-ee
Confidence 45667778888998888999999887652 22344455666666666 56677888888888877643221100 00
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHH
Q 002596 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLL 248 (902)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~vr~~~~~~l~~l 248 (902)
..-..-+++.+. -+..+-+++...+.|+..+... | .+...+. .+++.+...+.+ ..+.|-+-++.++..+
T Consensus 197 ---adg~~~l~~~l~--s~~~~~QlQYqsifciWlLtFn-~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 197 ---ADGVSLLIRILA--STKCGFQLQYQSIFCIWLLTFN-P-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred ---cCcchhhHHHHh--ccCcchhHHHHHHHHHHHhhcC-H-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000122333333 2334677888888888776532 1 1222222 235555555543 3456777777788888
Q ss_pred HhhChhhhhhhHHHHHHHHH--------hhhc---CCCHHHHHHHHHHHHHhhccCC-chhhHHhhhhhhHHHHHhhccC
Q 002596 249 IEVRPSFLEPHLRNLFEYML--------QVNK---DTDDDVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVLLSNMIY 316 (902)
Q Consensus 249 ~~~~~~~~~~~l~~i~~~~~--------~~~~---~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~l~~l~~~ll~~l~~ 316 (902)
++..++. .+-..+...|+ +.+. -.|+++ ...++++.+-.+... ....+..|..++..-.+
T Consensus 270 l~k~~~~--~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL-~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L----- 341 (442)
T KOG2759|consen 270 LDKGPDR--ETKKDIASQMVLCKVLKTLQSLEERKYSDEDL-VDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRL----- 341 (442)
T ss_pred hccCchh--hHHHHHHHHHHhcCchHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCc-----
Confidence 7766532 11122222221 2221 235554 334555544322100 00011122222111111
Q ss_pred ChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHH
Q 002596 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA 396 (902)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 396 (902)
+|++-+-.......=+..+.+.-. .++..+..
T Consensus 342 -----------------------------------------------~WSP~Hk~e~FW~eNa~rlnenny-ellkiL~~ 373 (442)
T KOG2759|consen 342 -----------------------------------------------EWSPVHKSEKFWRENADRLNENNY-ELLKILIK 373 (442)
T ss_pred -----------------------------------------------CCCccccccchHHHhHHHHhhccH-HHHHHHHH
Confidence 111111111111111222222111 35566666
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhhccCCCChHHHHHHHHHHHhhHH
Q 002596 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (902)
Q Consensus 397 ~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (902)
++..+++ +..-..|+.=+|...+..+++-. .+.+ .=..+...+++++|.||..|+.|+-.+..
T Consensus 374 lLe~s~D--p~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 374 LLETSND--PIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHhcCCC--CceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 6765443 77778888889988887765421 1111 12347788999999999999999877653
No 210
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=14 Score=45.48 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCc--c----chhHhhhHHHHHHHHHHhhhhh-----h-hhH---
Q 002596 682 SAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK--E----TVSVANNACWAIGELAVKARQE-----I-SPI--- 746 (902)
Q Consensus 682 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--~----~~~v~~~a~~alg~l~~~~~~~-----~-~~~--- 746 (902)
+-+.+...++.....-+.||+..++......|..-+.. + .+.-...-.|.+|.++.++-.+ . ..|
T Consensus 1414 ~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~ 1493 (1621)
T KOG1837|consen 1414 SFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIESFVTK 1493 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 34556667777777888999998887666655432110 0 0001122456676666543210 1 111
Q ss_pred ------HHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 002596 747 ------VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCA 820 (902)
Q Consensus 747 ------~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~ 820 (902)
...++..+++..-.. ...+.+...++.++++.....++...| +....+..... +....|-.+...+..
T Consensus 1494 ~r~~~~~~p~v~ql~n~~~e~-~~~~~v~~~li~~i~~~~~a~~~d~~p----l~~k~l~~trs-s~~~~r~~ai~~~~~ 1567 (1621)
T KOG1837|consen 1494 SRFELLSYPLVSQLVNVLLEF-YASDIVSKLLIAEIASDSVADKDDLKP----LNQKILKKTRS-SSRKARYLAIIQVKL 1567 (1621)
T ss_pred hhhhhhhhhhHHHHHHhhccc-hhhhHHHHHHHHHHHhhccCChhhhHH----HHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 112222333321111 113446667777788887776655433 33333333222 122345566677777
Q ss_pred HHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhHHH
Q 002596 821 MVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQ 873 (902)
Q Consensus 821 li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 873 (902)
++..-++.....+|+.+.-++...++.++++......++..+-.++|+ .+++
T Consensus 1568 l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE-~l~~ 1619 (1621)
T KOG1837|consen 1568 LYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE-PLQS 1619 (1621)
T ss_pred HHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch-hhhh
Confidence 777777888899999999998876655556777777788888888895 5544
No 211
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.75 E-value=1.9 Score=44.30 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=102.9
Q ss_pred HHHHHHHHhccCCh-hhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002596 132 LLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 132 ll~~L~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (902)
+-..|.+|++..=| .|-..|+.+...|++..+..-- .+.+.-..|-++.++...+..||-.-++.+..+.-.
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L-------~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lp 127 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGL-------AQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLP 127 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHH-------HhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 44556666654433 4556789999988888766311 123466778899999999999999999999998877
Q ss_pred cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 002596 211 MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (902)
Q Consensus 211 ~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~ 288 (902)
++..+.+.+..++..++..+.++..++...+...+..+.....+. .+...++.++- ..++.|..|+.++..
T Consensus 128 L~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 128 LGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLR 198 (307)
T ss_pred ccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHH
Confidence 777888888888888888888888889999999998887765443 12333333332 245578888887654
No 212
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.69 E-value=0.66 Score=39.03 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=68.0
Q ss_pred hHHhHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 002596 215 LFVSMDQYLQGLFLLSNDP----SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (902)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~----~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~ 290 (902)
+.+++=.++..+-..+.|. ....++.++.++..+++.....+....++++-.+...+. .++.+..|+++|..+.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 3444444455555544443 345689999999999998778887888887776666665 5569999999999988
Q ss_pred ccCCchhhHHhhhhhhHHHHHhh
Q 002596 291 EAQLPHENLKEFLPRLVPVLLSN 313 (902)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~ll~~ 313 (902)
..- ..+.+.+.++.++..++++
T Consensus 83 ~~L-~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 83 KTL-KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HhC-CHHHHHHHHHHHHHHHHHh
Confidence 762 3456777788777776654
No 213
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.65 E-value=8.2 Score=42.08 Aligned_cols=256 Identities=12% Similarity=0.070 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHHHHHhcccch-hhHHhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHh
Q 002596 192 PHTSLRKLSLGSVNQFIMLMPS-ALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQ 269 (902)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~-~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~ 269 (902)
+++.....+...|..++...+. ....++ ..++..|+.++.++++..|......+..+....+..-.-....+...+.+
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~ 181 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYR 181 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444456667777777765332 111223 35688899999999999999998888887766554332222233333333
Q ss_pred hhcC-CCHHHHHHHHHHHHHhhccCC--chhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccc
Q 002596 270 VNKD-TDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSS 346 (902)
Q Consensus 270 ~~~~-~~~~v~~~al~~l~~l~~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~ 346 (902)
...+ .........+++++.+.+... .++.-..++ ...+++...... +
T Consensus 182 fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl---~~vllPLh~~~~------------------------~--- 231 (409)
T PF01603_consen 182 FIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFL---RKVLLPLHKSPH------------------------L--- 231 (409)
T ss_dssp HHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHH---HHTTGGGGGSTG------------------------G---
T ss_pred HhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHH---HHHHHHHhcCCc------------------------H---
Confidence 3332 233345677888888877511 111111122 122222111100 0
Q ss_pred cCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-h
Q 002596 347 RLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-K 425 (902)
Q Consensus 347 ~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~ 425 (902)
......-..++..+...-+. ....++..+..+---.+ ....-.-+.-+..+.+.+. .
T Consensus 232 ------------------~~y~~~L~~~~~~f~~kdp~-l~~~~i~~llk~WP~t~---s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 232 ------------------SSYHQQLSYCVVQFLEKDPS-LAEPVIKGLLKHWPKTN---SQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp ------------------GGTHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHHTT--HH
T ss_pred ------------------HHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCCC---chhHHHHHHHHHHHHHhcCHH
Confidence 01223334444444433322 22233333333222222 2323333444566666554 4
Q ss_pred hhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhh--HHHHhhhhcCCcchhhHHHHHHHHHHHhcC-----CCHHHHHH
Q 002596 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQEA 498 (902)
Q Consensus 426 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-----~~~~v~~~ 498 (902)
.+......++..+..+++++|..|-.+|+..+.+= ... ...+...++|.++..+.. -+..||..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~l---------i~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~ 360 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSL---------ISQNSRVILPIIFPALYRNSKNHWNQTVRNL 360 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHH---------HHCTHHHHHHHHHHHHSSTTSS-SSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHH---------HHhChHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56677888999999999999999999988776542 222 234556777777777654 25789999
Q ss_pred HHHHHHHHHH
Q 002596 499 ACSAFATLEE 508 (902)
Q Consensus 499 a~~al~~l~~ 508 (902)
|+.++..+.+
T Consensus 361 a~~vl~~l~~ 370 (409)
T PF01603_consen 361 AQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999987766
No 214
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=25 Score=47.44 Aligned_cols=291 Identities=13% Similarity=0.087 Sum_probs=166.2
Q ss_pred hHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhh--------hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhH
Q 002596 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG--------LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~--------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (902)
+++.+.+.+...+ ...+.++..++..+.+..... ..|.++.+++.+.+...++.+.-|...+..++.+.
T Consensus 985 ~ldal~~~l~~~~---~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 985 FLDALVESLSHEN---SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHhccc---hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 4666777777666 888999999998877644321 23778889999999999999999999888888887
Q ss_pred HHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHh-c----ccch-HhHHHHHHHHHHHHhc
Q 002596 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE----AACSAFATLEEEA-A----EELA-PRLEIILQHLMMAFGK 531 (902)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~----~a~~al~~l~~~~-~----~~~~-p~l~~i~~~l~~~l~~ 531 (902)
+.++.. ....+...++..++..+.|...++.. .+-..+..+...+ . ..-. .....++..+..-+.+
T Consensus 1062 ~~~~~~----~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n 1137 (3550)
T KOG0889|consen 1062 ESMPSL----WLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN 1137 (3550)
T ss_pred hhchHH----HHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 776532 24456677888888888875433322 3344444444433 1 1111 2345566666777777
Q ss_pred cchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCC--CCcch-----hhHHHHHHHHHHHhcccccccc
Q 002596 532 YQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPN--SDKDL-----FPLLECFTSIAQALGAGFTQFA 604 (902)
Q Consensus 532 ~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~--~~~~~-----~~~l~~l~~i~~~~g~~f~~~~ 604 (902)
+...++..+..++..+....|... ..++.++.+.+....- .-+.. ...++.+.. +...|+.+-.|.
T Consensus 1138 pN~~VR~~~~~~L~~i~~~s~~~v------~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~ 1210 (3550)
T KOG0889|consen 1138 PNSDVREFSQKLLRLISELSGKSV------VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFT 1210 (3550)
T ss_pred CchHHHHHHHHHHHHHHHHcCCcH------HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCch
Confidence 788888888888888888775443 3344444444421110 00111 112222221 223445444444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHH-HHHhcCCChHHHHHH
Q 002596 605 QPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDML-LQCCMDDASDVRQSA 683 (902)
Q Consensus 605 ~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~vr~~a 683 (902)
+.++..... +++++.....+... +.+.. .++. ....-.|..+
T Consensus 1211 ~~l~~l~~~------------------------------~~~La~~~~~~~~~------i~k~~~~k~~-~~l~~Lr~~c 1253 (3550)
T KOG0889|consen 1211 EELYRLKRF------------------------------LIALADAEEDELAT------IQKTSDYKNS-SSLVRLRVAC 1253 (3550)
T ss_pred HHHHHHHHH------------------------------HHHhhhhhhhhhhh------hhcccccccc-cccccchhHH
Confidence 443331110 11111110000000 00000 0000 0122347778
Q ss_pred HHHHHHHHhhch---HhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHH
Q 002596 684 FALLGDLARVCP---VHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGEL 735 (902)
Q Consensus 684 ~~~l~~l~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l 735 (902)
..+++....... ....++.+.++..+.+.+..+ ..+..+.+..++-..
T Consensus 1254 i~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~----~~Ei~~~~~~~l~~v 1304 (3550)
T KOG0889|consen 1254 IKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR----SSELIEVALEGLRKV 1304 (3550)
T ss_pred HHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC----hHHHHHHHHHHHHhh
Confidence 888887776654 345688899999999998776 567777776666544
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.50 E-value=0.36 Score=39.39 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=62.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh
Q 002596 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (902)
Q Consensus 180 ~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 256 (902)
..+...+.-++|+.+.+|..++..|..++.... ......+.++..+...+.|+++-+--.|+++|..++...|+.+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 345677788899999999999999999997654 2334467778888888999999999999999999999988743
No 216
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.47 E-value=2.5 Score=44.35 Aligned_cols=181 Identities=16% Similarity=0.158 Sum_probs=90.1
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhchHhhHH----hHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhh
Q 002596 668 LLQCCMDDASDVRQSAFALLGDLARVCPVHLQA----RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEI 743 (902)
Q Consensus 668 l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~ 743 (902)
++..+..++.-+..-|..++..++...+..... .++.++..+...++++ +.++...|+.+++.+...-. +
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~----~~~~~~~av~~L~~LL~~~~--~ 183 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSS----DSELQYIAVQCLQNLLRSKE--Y 183 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HH----HH---HHHHHHHHHHHTSHH--H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHhCcch--h
Confidence 334677778889988999999999887754443 4455555555544433 44566888899999874322 2
Q ss_pred hhHH--HHHHHHHHHhhc----CChhhhhhHHHHHHHHHHHHhhhcCCccCcC-hHHHHHHHHHhccCCCCcHHHHHHHH
Q 002596 744 SPIV--MTVVLCLVPILK----HSEELNKSLIENSAITLGRLAWVCPELVSPH-MEHFMQPWCIALSMIRDDTEKEDAFR 816 (902)
Q Consensus 744 ~~~~--~~il~~l~~~l~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~~l~~~~~~l~~~~d~~e~~~~~~ 816 (902)
+..+ ...++.+.+++. .+......+.=.++-|+-- ..+.++.+... -..+++..+..+.....+..-+.++.
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl-LSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL-LSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH-HTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH-HhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 2221 556666667661 1111122333333333322 22222211100 01155555555554332333446667
Q ss_pred HHHHHHHcCchh-----hhhhHHHHhhHhhc--ccccCcHHHHHHHHHH
Q 002596 817 GLCAMVKANPSG-----ALSSLVFMCRAIAS--WHEIRSEELHNEVCQV 858 (902)
Q Consensus 817 ~l~~li~~~p~~-----~~~~l~~i~~~i~~--~~~~~~~~~~~~~~~~ 858 (902)
.|.+++...+.. +..+++.+++.+.. | .++|+.+.+..+
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~---~Dedl~edl~~L 308 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW---SDEDLTEDLEFL 308 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-----SSHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC---CCHHHHHHHHHH
Confidence 777777766632 23566777776654 4 346677665543
No 217
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.45 E-value=0.11 Score=47.63 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHHHhhcCcc-hhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc
Q 002596 365 WNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (902)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 442 (902)
-.+|++|.+++..+....... -+..++..+...+.| + ...|.-+...+..++..++..+.+.++.+++.+-..+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~---~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-E---HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS-----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-c---HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 359999999999998877553 355668888888887 6 8999999999999999888877766666666555444
No 218
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.41 E-value=2.4 Score=47.62 Aligned_cols=224 Identities=18% Similarity=0.186 Sum_probs=134.9
Q ss_pred CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhh--c---------CChHHHHHHHH
Q 002596 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG--A---------ADRHIRSTVGT 115 (902)
Q Consensus 47 p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~--~---------~~~~vr~~~a~ 115 (902)
++-..++..+.++ .+.+.++-..|-..||+.-.. |+ + ..+.+.|+.... . .++.+|..+-
T Consensus 234 ~d~~~~~~~liAs-ad~~~~V~~~ae~~LKr~~~~-~e--d----~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL- 304 (501)
T PF13001_consen 234 PDEERFPPLLIAS-ADSNSSVSDRAEDLLKRLSVS-LE--D----PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKIL- 304 (501)
T ss_pred CcHhHHhheeeEE-eCCcchHHHHHHHHHhhcCCC-CC--C----HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHH-
Confidence 3333334444443 256778888999999866444 54 2 233344444322 1 2566666644
Q ss_pred HHHHHHhhc-CcCchHHHHHHHHHHhccC--ChhhhhHHHHHH---HHHHhhchhccccCCCCCCCcchhhhHHHHHHHh
Q 002596 116 IVSVVVQLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDAL---SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (902)
Q Consensus 116 ~l~~i~~~~-~~~~w~~ll~~L~~~l~~~--~~~~r~~al~~L---~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (902)
..+.+.. -....|..+..+..++.++ +...|..++..+ ...+..++...-.. ..+.++..+...+
T Consensus 305 --~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~-------l~~~i~~~g~p~~ 375 (501)
T PF13001_consen 305 --SLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKL-------LRPVILSQGWPLI 375 (501)
T ss_pred --HHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHH-------HHHHHHhcCcccc
Confidence 3333332 2346688888888888887 567777888888 66666655432111 1122222222233
Q ss_pred c--------CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh-h--
Q 002596 190 Q--------SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-P-- 258 (902)
Q Consensus 190 ~--------~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~-- 258 (902)
+ ..+...|..+..+++.+....|.-+...+ .++..+|..+.++.+++|..+-++|..++..+...-. .
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~ 454 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDE 454 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhH
Confidence 2 23678999999999999998877654443 4577888888888899999999999999877665433 1
Q ss_pred hHHHHHHHHHh-hhcCCCHHHHHHHHHHHHHh
Q 002596 259 HLRNLFEYMLQ-VNKDTDDDVALEACEFWHSY 289 (902)
Q Consensus 259 ~l~~i~~~~~~-~~~~~~~~v~~~al~~l~~l 289 (902)
........++. ...+....+|..|+.+...+
T Consensus 455 ~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 455 QKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 11222222222 23344556777777776555
No 219
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.41 E-value=2.4 Score=49.73 Aligned_cols=131 Identities=24% Similarity=0.349 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhhc-Cc------------chhhhhHHHHHHhh----ccCCCCchHHHHHHHHHHHHHHhcchhhhhh
Q 002596 367 LRKCSAAALDVLSNVF-GD------------EILPTLMPVIQAKL----SASGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~-~~------------~~~~~l~~~l~~~l----~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 429 (902)
+|..|..+++.+...+ .. .+...+++.+...+ ...+ ...+..++.+||.+..
T Consensus 451 l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 451 LRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGD---EEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT----HHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccC---HHHHHHHHHHhhccCC--------
Confidence 6677777777766554 11 23334444444444 4455 6788999999998863
Q ss_pred hHHHHHHHHhhccCCC---ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 002596 430 HLSEIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFA 504 (902)
Q Consensus 430 ~l~~i~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~v~~~a~~al~ 504 (902)
+.+++.+.+.+.+. ...+|.+|++++.+++...+ ..+.+.+++.+.|. +..||.+|...|-
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~------------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP------------EKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H------------HHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc------------HHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 22456666666555 67999999999998865443 24555555656553 4789998876554
Q ss_pred HHHHHhcccchHhHHHHHHHHHHHHhc
Q 002596 505 TLEEEAAEELAPRLEIILQHLMMAFGK 531 (902)
Q Consensus 505 ~l~~~~~~~~~p~l~~i~~~l~~~l~~ 531 (902)
. +. |- ..++..+...+..
T Consensus 586 ~----~~----P~-~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 586 R----CN----PS-PSVLQRIAQSLWN 603 (618)
T ss_dssp H----T--------HHHHHHHHHHHTT
T ss_pred h----cC----CC-HHHHHHHHHHHhh
Confidence 2 11 11 2455566666654
No 220
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=94.34 E-value=2.8 Score=38.17 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=81.5
Q ss_pred HHHHHHhhhhhc--CChHHHHHHHHHHHHHHhh---cCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHH-hhchhcc
Q 002596 93 YIKSELLPCLGA--ADRHIRSTVGTIVSVVVQL---GGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (902)
Q Consensus 93 ~i~~~ll~~l~~--~~~~vr~~~a~~l~~i~~~---~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~-~~~~~~~ 166 (902)
.||..++.+|+. .....-+.++.+++.++.. ...+.|++|...+.... ..++ ..|+.++..+. ....+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 478888888874 2344545556666666544 25789999997777655 2222 34666665544 2211111
Q ss_pred ccCCCCCCCcchhhhHHHHHHHhcCC---CHHHHHHHHH-HHHHHhcccc-----hhhHHhHHHHHHHHHHhhCCCCH-H
Q 002596 167 DSDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLG-SVNQFIMLMP-----SALFVSMDQYLQGLFLLSNDPSA-E 236 (902)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~al~-~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~-~ 236 (902)
.+.++.++|.+.+.|.+| +.+....|+. ++...+.... +.+.+.++.++..+..+.+...+ .
T Consensus 79 --------~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 79 --------IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred --------HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 245678899999999887 3343445543 3333443322 12233334444555555554444 5
Q ss_pred HHHHHHHHHHHHHh
Q 002596 237 VRKLVCAAFNLLIE 250 (902)
Q Consensus 237 vr~~~~~~l~~l~~ 250 (902)
.-..+++-+..+..
T Consensus 151 ~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 151 FLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666655544
No 221
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.29 E-value=0.31 Score=39.73 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (902)
.+...+..++||.+.||..++..|.++.+.-. ......+.++..++..++|+++-|.-.|..++..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 35667778899999999999999999887432 13455788999999999999999999999999999886543
No 222
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.21 E-value=8.5 Score=40.41 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=71.7
Q ss_pred hhhHHhhh-ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCC-CCCccchhHhhhHH
Q 002596 652 GSGIESLV-AQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNT-PKLKETVSVANNAC 729 (902)
Q Consensus 652 ~~~~~~~~-~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~v~~~a~ 729 (902)
|.+...++ ..|.++..+..++.+++.+....+.-++|++++.-...+.=.-.+++..++.++.. ...++++.+..+++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 44443333 22568999999999988888888888899999875433221123455555555543 22233667777888
Q ss_pred HHHHHHHHhhh--hhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHh
Q 002596 730 WAIGELAVKAR--QEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLA 780 (902)
Q Consensus 730 ~alg~l~~~~~--~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (902)
.||-.++.-.+ ..|.|. .+.+.+++.+.-.. +.+.....+++..+.
T Consensus 383 sALRnl~IPv~nka~~~~a--GvteaIL~~lk~~~---ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPA--GVTEAILLQLKLAS---PPVTFKLLGTLRMIR 430 (604)
T ss_pred HHHHhccccCCchhhcccc--chHHHHHHHHHhcC---CcchHHHHHHHHHHH
Confidence 88888764322 334332 23445555555443 344444455544444
No 223
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.68 Score=49.71 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccC-CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 484 (902)
-.+|.+|+.+||-++-.-. +.++..++.|. +-++.||...+.+||-.+..- ..+ ..+..+
T Consensus 566 DDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~--------G~~---~a~diL 626 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT--------GDK---VATDIL 626 (926)
T ss_pred hHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--------ccH---HHHHHH
Confidence 5566666666664432111 12333333333 456778887777777665422 122 223333
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchh
Q 002596 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR 535 (902)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~ 535 (902)
-..+.|++.-||..||.+++.+.-.+.+.+.|....|...+.+.+.+.++.
T Consensus 627 ~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 627 EALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 344569999999999999999999999999999999999999988765543
No 224
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.00 E-value=14 Score=42.17 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=51.7
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH-HHHHHHHHHhcCCCCCcc--chhHhhhHHHHHHHHHH
Q 002596 661 QSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL-SDFLDIAAKQLNTPKLKE--TVSVANNACWAIGELAV 737 (902)
Q Consensus 661 ~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~--~~~v~~~a~~alg~l~~ 737 (902)
++..+|.+...++.++..|..++.+++.+++...- ..+.+ ...|+.++.+|.+..... ..++-.++|..+-++..
T Consensus 564 kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred hccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH
Confidence 34567788888888899999999999999887543 22222 367788888886653200 13555677777777764
Q ss_pred hh
Q 002596 738 KA 739 (902)
Q Consensus 738 ~~ 739 (902)
..
T Consensus 642 ~~ 643 (717)
T KOG1048|consen 642 KN 643 (717)
T ss_pred Hh
Confidence 43
No 225
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.99 E-value=2.9 Score=48.41 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHhhcC-------cchhhhhHHHHHHhhc----cCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHH
Q 002596 366 NLRKCSAAALDVLSNVFG-------DEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~-------~~~~~~l~~~l~~~l~----~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i 434 (902)
.+|..|..+++.+..... ..++..+++.+.+.+. ..+ ...+...+.+||.+.... .++.+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~LkaLGN~g~~~------~i~~l 482 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD---EEEIQLYLKALGNAGHPS------SIKVL 482 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC---chheeeHHHhhhccCChh------HHHHH
Confidence 477888888888887552 1123445555554443 344 556788888888775421 12222
Q ss_pred HHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 002596 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFA 504 (902)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~~v~~~a~~al~ 504 (902)
.+++. .-....+.+|.+|+|++.+++...+. .+-+.+++.+.| .++.||.+|+..|-
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~------------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPR------------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 33332 22345679999999999988775432 334444555554 35889999877664
No 226
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=34 Score=46.27 Aligned_cols=91 Identities=19% Similarity=0.303 Sum_probs=69.1
Q ss_pred chhhhHHHHHHHhcCC---------CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002596 177 PINIFLPRLLQFFQSP---------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (902)
Q Consensus 177 ~~~~l~~~l~~~l~~~---------~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~ 247 (902)
.+..++|.+++.+... ..+.|..++..++.+.. .+.+.++...++..++..+..++++...-+++++..
T Consensus 46 ~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~--~e~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~ 123 (3550)
T KOG0889|consen 46 FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPH--NEVFKPFSQELLKVLMRVLTNDNEENAILCLKIITD 123 (3550)
T ss_pred HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHH
Confidence 3678899999888753 34689999999998764 345677777888888888888888888889999999
Q ss_pred HHhhChhhhhhhHHHHHHHHHh
Q 002596 248 LIEVRPSFLEPHLRNLFEYMLQ 269 (902)
Q Consensus 248 l~~~~~~~~~~~l~~i~~~~~~ 269 (902)
+...+...+..++..++.++.+
T Consensus 124 l~r~f~~~~~~~v~~fl~~V~~ 145 (3550)
T KOG0889|consen 124 LFRQFKSLVEQHVQPFLDIVID 145 (3550)
T ss_pred HHHhhchHHHHHHHHHHHHHHH
Confidence 8887776666666655555543
No 227
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.80 E-value=23 Score=43.90 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhhc-CcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHhhccCCC
Q 002596 368 RKCSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDK 445 (902)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~ 445 (902)
..++..+.+.++..+ |....+.++..+.+...++. +|+.|.+.+..+....-...- .......++...+.+.+.|.
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~--tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSS--TWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcch
Confidence 456666777666666 45777888887776444333 399999988777765543221 22456677888899999999
Q ss_pred ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC-CCHHHH-HHHHHHHHHHHHHhcccchHhHHHHHH
Q 002596 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-TNKRVQ-EAACSAFATLEEEAAEELAPRLEIILQ 523 (902)
Q Consensus 446 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-~~~~v~-~~a~~al~~l~~~~~~~~~p~l~~i~~ 523 (902)
...||..|..+|+-+...-.- ................ ....++ -.|.-.++.++-..+-.+.-+++..+.
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~--------~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~ 1653 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKF--------QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLM 1653 (1710)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHH
Confidence 899999999998877653211 1111111111111111 112333 346667777777666555555555555
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 524 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
.+.....+. ......+-.++..+-+...+.
T Consensus 1654 ~Ls~fa~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1654 NLSSFARES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred HHHhhcCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 443333322 334445556666655544433
No 228
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.66 E-value=12 Score=40.11 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=139.6
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchh-hhHHHHHHHhcC--CCHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN-IFLPRLLQFFQS--PHTSLRKLSLG 202 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~--~~~~vr~~al~ 202 (902)
.-.|..+.+.+...+-+++..+|.+|++++..++.+..... ...+ .+--.+...+.. ....-|..|++
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~---------~~~~l~id~~ii~SL~~~~~~~~ER~QALk 90 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ---------ILLKLHIDIFIIRSLDRDNKNDVEREQALK 90 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH---------HHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence 35788888888876666669999999999988887643310 0000 111123334433 34567999999
Q ss_pred HHHHHhcc--cchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhh--hHHHHHHHHHhhhcCCCHHH
Q 002596 203 SVNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDDV 278 (902)
Q Consensus 203 ~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~l~~i~~~~~~~~~~~~~~v 278 (902)
.+..+++. .+..+. ..+++.+...+.+++...|..+++.+.+++-..|+.+.. -+..++..+. +...++
T Consensus 91 liR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~----d~~~~~ 163 (371)
T PF14664_consen 91 LIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI----DGSFSI 163 (371)
T ss_pred HHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH----hccHhH
Confidence 99999877 333221 345778888888888899999999999999888886532 2334444433 333335
Q ss_pred HHHHHHHHHHhhccCCchhhHHhhhhhhHHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCC
Q 002596 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (902)
Q Consensus 279 ~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd 358 (902)
....+..+..+.+.+...+.+++..+ +..++.-++.... + . .. ++
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~d--L~~l~apftd~~~--------------------~-----------~-~~-~~ 208 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFD--LESLLAPFTDFHY--------------------R-----------K-IK-DD 208 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCcc--HHHHHHhhhhhhc--------------------c-----------c-cc-cc
Confidence 55566667777777655555554322 2223222221100 0 0 00 00
Q ss_pred ccccccccHHHHHHHHHHHHHhhcCcch---hh--hhHHHHHHhhccCCCCchHHHHHHHHHHHHHHh
Q 002596 359 DDIVNVWNLRKCSAAALDVLSNVFGDEI---LP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (902)
Q Consensus 359 ~d~~~~~~~r~~a~~~l~~l~~~~~~~~---~~--~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~ 421 (902)
.+. +.-..+..++..+.+.+++-+ .+ ..+.-+...+.-+. ...|+..+..+..+..
T Consensus 209 -~~~---~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~---~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 209 -REL---ERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN---PEIRKAILDLLFDLLR 269 (371)
T ss_pred -hHH---HHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC---HHHHHHHHHHHHHHHC
Confidence 000 133556777777777775411 01 23344445566666 7788888877776654
No 229
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.61 E-value=8.4 Score=38.29 Aligned_cols=185 Identities=17% Similarity=0.058 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhcCC-ChHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhhhccCC---HhHHHHHHHHHhhhh---h
Q 002596 32 DKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMS---PSNQQYIKSELLPCL---G 103 (902)
Q Consensus 32 ~r~~a~~~L~~~~~~p-~~~~~l~~il~~~-~~~~~~~R~~a~~~Lk~~i~~~w~~l~---~~~~~~i~~~ll~~l---~ 103 (902)
.....-..|-++..+. ......++++... ++.....+..+.-++ ..-|..-+ +..+..+....++.. .
T Consensus 17 ~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl----~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 17 LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLL----TLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHH----HHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 5556666666655444 3333344444222 133344444444333 33343311 223333333233322 1
Q ss_pred --cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHh-ccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhh
Q 002596 104 --AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (902)
Q Consensus 104 --~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (902)
+......-..+..+..++...+. .|+++++.+..++ .+.++.++..++.++..+|+.-.-. +..
T Consensus 93 ~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd------------~~s 159 (234)
T PF12530_consen 93 SKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD------------FYS 159 (234)
T ss_pred CCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc------------HHH
Confidence 22444555556788888888755 9999999999999 7778888999999999999532211 133
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHHhccc---chhhHHhHHHHHHHHHHhhCCCC
Q 002596 181 FLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLSNDPS 234 (902)
Q Consensus 181 l~~~l~~~l~~~-~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~ 234 (902)
.+..+.+-++.+ .+.+-+..+..+ .++... .+.+......++..+++.....+
T Consensus 160 ~w~vl~~~l~~~~rp~v~~~l~~l~-~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 160 AWKVLQKKLSLDYRPLVLKSLCSLF-ALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHH-HHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 344444444332 444443322222 222221 23344455667788887776554
No 230
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.56 E-value=11 Score=39.50 Aligned_cols=184 Identities=14% Similarity=0.216 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHH-------HHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcC---chHH
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI-------KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---GWLE 131 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i-------~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~---~w~~ 131 (902)
..+-+.|.-++..+.+.+++.-..-.....+++ ...|+.+-. ++.+--.++.++...++.+... -+++
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~l~~~iL~~~ 164 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHESLAKIILYSE 164 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHHHHHHHHTSG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHHHHHHHhCcH
Confidence 467788888888887777664333220112233 333333333 4445556666776666553100 0011
Q ss_pred HHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc
Q 002596 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (902)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (902)
.+..+...++.++=++---|+.++..+.......... .+....+.++...-+++.+++.-.|..+++.|+.++..-
T Consensus 165 ~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~----fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr 240 (335)
T PF08569_consen 165 CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE----FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDR 240 (335)
T ss_dssp GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHch
Confidence 2222566677777677667777777666543321110 012334677888888999999999999999999998542
Q ss_pred c--hhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002596 212 P--SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 212 ~--~~~~~~~--~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 251 (902)
. ..+..++ +..|..+..++.|++..++-.|+.++--++.+
T Consensus 241 ~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 241 SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2 1122222 34577888889999999999999999877764
No 231
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.33 E-value=2.6 Score=41.58 Aligned_cols=150 Identities=9% Similarity=0.109 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC------CHHHHHHHH
Q 002596 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT------NKRVQEAAC 500 (902)
Q Consensus 427 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~------~~~v~~~a~ 500 (902)
+.-|++.+++.+ +...+...|.+|+.++..= .-+.+++|.++..+.+. +..+-....
T Consensus 195 Lq~YF~kvisal---~dEs~~~~r~aAl~sLr~d--------------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~ 257 (450)
T COG5095 195 LQMYFDKVISAL---LDESDEQTRDAALESLRND--------------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVV 257 (450)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC--------------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344555555544 3445678899997776431 22334455554444431 122222333
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHhcc------ch----hhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHH
Q 002596 501 SAFATLEEEAAEELAPRLEIILQHLMMAFGKY------QR----RNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIA 570 (902)
Q Consensus 501 ~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~------~~----~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~ 570 (902)
.....++++-.--+.||+.+++|.++.++-.. +. ..+..+...++.++...+.... ..-+.+...++.
T Consensus 258 ~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTllK 335 (450)
T COG5095 258 MMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLLK 335 (450)
T ss_pred HHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHHH
Confidence 33333333333346899999999999887431 11 1344566667777666654432 222344445555
Q ss_pred HHhcCCCCCcchhhHHHHHHHHHHH
Q 002596 571 KWQQLPNSDKDLFPLLECFTSIAQA 595 (902)
Q Consensus 571 ~l~~~~~~~~~~~~~l~~l~~i~~~ 595 (902)
.|-..+........++.|++.+.+.
T Consensus 336 afLD~~k~~sT~YGalkgls~l~ke 360 (450)
T COG5095 336 AFLDREKTESTQYGALKGLSILSKE 360 (450)
T ss_pred HHHhcccccchhhhhhhhhhhhchh
Confidence 4443222222235677777766543
No 232
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=2.1 Score=44.55 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=103.6
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhh
Q 002596 397 KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (902)
Q Consensus 397 ~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 476 (902)
.+..-+ .++|..|+..+-.+....+..+..++-.+++.+.....|.+..||.+...++..+....... ....+
T Consensus 66 qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e----~~sp~ 138 (393)
T KOG2149|consen 66 QLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE----DQSPM 138 (393)
T ss_pred hhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----hhcch
Confidence 344445 88999999999888877777777788889999999999999999999999988876655432 25677
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhc
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~ 531 (902)
+.-+++.+...|..-.+.+|..+...+..+++.+++.+..+...+++.+...+..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 7888888888898888999999999999999998888777766666666555543
No 233
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.18 E-value=2.1 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCC---chHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc-
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE---AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL- 442 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l- 442 (902)
.|.+|..+|. .+.-+..++|.+..+++++-.. +-..--..++...++..+..-.+.||+.+++|.++.++
T Consensus 214 ~r~aAl~sLr------~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcli 287 (450)
T COG5095 214 TRDAALESLR------NDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLI 287 (450)
T ss_pred HHHHHHHHhc------cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHH
Confidence 5777766662 2223344444444444432100 02222233333444444443345688888888776653
Q ss_pred -----CC----CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHh-
Q 002596 443 -----DD----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA- 510 (902)
Q Consensus 443 -----~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~v~~~a~~al~~l~~~~- 510 (902)
++ .+-.+|.-|+..++..+..+... ....-..+...+++.+.|.+ ...+-.|...+..+.++.
T Consensus 288 akklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 288 AKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVI 362 (450)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhhe
Confidence 12 23369999999999888877642 33344567778888887754 345666777777776654
Q ss_pred cccchHhH
Q 002596 511 AEELAPRL 518 (902)
Q Consensus 511 ~~~~~p~l 518 (902)
...+.|.+
T Consensus 363 r~~i~pn~ 370 (450)
T COG5095 363 RTVIKPNA 370 (450)
T ss_pred eeeeccch
Confidence 33344433
No 234
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.03 E-value=14 Score=39.00 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=72.9
Q ss_pred hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch---hhh-hhhHHHHHHHHhh-ccCCCChHHHHHHHHHHHhhHH
Q 002596 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI---KGL-YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (902)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~---~~~-~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~~~~ 462 (902)
|.++..+..++.+.+ ....-.+..++|.+++.-. ..+ ..+++.++..+.+ .--|.+..++.+++.++..+.-
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 457888888999888 8889999999999997432 222 2455556666655 3446788889999999988765
Q ss_pred HHhhhhcCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 463 FIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
-... ...+. ..+...++..++-..|+|+-.-..++.-+.
T Consensus 391 Pv~n------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 391 PVSN------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred cCCc------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3221 11111 235666666677666777666555555443
No 235
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.29 Score=45.44 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH---Hhcc
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD---AVGF 553 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~---~~~~ 553 (902)
+...++.++.+|.+..-.-+--|-..+..++...++.+.|.+++++..|..+|...+.++....+.+|..+.. .+|.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 4567777777777655445555666677788888899999999999999999999888888877777776655 4567
Q ss_pred cCCchhhhhhhhHHHHHHHhcC
Q 002596 554 ELNQPVYLDILMPPLIAKWQQL 575 (902)
Q Consensus 554 ~~~~~~~~~~ll~~l~~~l~~~ 575 (902)
.+. ||+.+++|.+ +.+++.
T Consensus 192 aLV--PfYRQlLp~~-n~~k~~ 210 (262)
T KOG3961|consen 192 ALV--PFYRQLLPVL-NTFKNS 210 (262)
T ss_pred hhh--hHHHHhhhhh-hhhccc
Confidence 777 9999999854 555543
No 236
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.74 E-value=2.6 Score=44.60 Aligned_cols=122 Identities=10% Similarity=0.047 Sum_probs=73.1
Q ss_pred HHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHH
Q 002596 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-------NKRVQEAACSAFATLEEE 509 (902)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-------~~~v~~~a~~al~~l~~~ 509 (902)
.+...+.+.+...|..|+..|.. ..-+.+++|.++..+.+. +..+-......+..++.+
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t--------------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT--------------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc--------------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 33334445677788887666542 223344455554444332 233334444445555554
Q ss_pred hcccchHhHHHHHHHHHHHHhcc----------chhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhc
Q 002596 510 AAEELAPRLEIILQHLMMAFGKY----------QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 510 ~~~~~~p~l~~i~~~l~~~l~~~----------~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~ 574 (902)
-.-.+.||+..+++.++.++-.. .+..+..+...++.+++..+.... .....++..+...+..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~--~l~~ri~~tl~k~l~d 320 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYN--TLQPRITRTLLKALLD 320 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHHcC
Confidence 44567899999999999888432 234566788999999988877643 4555566556555554
No 237
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.72 E-value=3.3 Score=44.87 Aligned_cols=155 Identities=16% Similarity=0.144 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCc-----hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhc
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA-----WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL 441 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 441 (902)
.|..|...|.. +.-+..++|.+..++.++-..| -..-...+....++..+..-.+.+|+..++|.++.+
T Consensus 223 ~r~eAL~sL~T------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTC 296 (576)
T KOG2549|consen 223 LRQEALQSLET------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTC 296 (576)
T ss_pred HHHHHHHhhcc------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHh
Confidence 46666666521 3334555566655555432111 333333344444555554456788999988888776
Q ss_pred cC----------CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHH
Q 002596 442 LD----------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEE 509 (902)
Q Consensus 442 l~----------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~v~~~a~~al~~l~~~ 509 (902)
+- |.++.+|.-|+..+..++..+... .......++..+.+.+.|+. ....-.|...|..|-..
T Consensus 297 vVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 297 VVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 42 678899999999999999888653 34455678888888888864 33444455555555443
Q ss_pred h-cccchHhHHHHHHHHHHHHhcc
Q 002596 510 A-AEELAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 510 ~-~~~~~p~l~~i~~~l~~~l~~~ 532 (902)
. ...+.|.+......+...+...
T Consensus 372 ~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 372 VIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred hhhheeccchHHHHHHhhhhcccc
Confidence 3 3445666666666666555543
No 238
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.62 E-value=21 Score=40.22 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHH
Q 002596 149 EGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL 228 (902)
Q Consensus 149 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~ 228 (902)
...+..+..++++++.. +.+ +..+..++..++.+..+++..||..++..+..++.....--...++.+...+..
T Consensus 60 dRIl~fla~fv~sl~q~-d~e-----~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQL-DKE-----EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLI 133 (892)
T ss_pred HHHHHHHHHHHHhhhcc-Cch-----hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 34666677777766542 111 235677888888888999999999999999998864332223344555677777
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhh-hcCCCHHHHHHHHHHHH
Q 002596 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV-NKDTDDDVALEACEFWH 287 (902)
Q Consensus 229 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~v~~~al~~l~ 287 (902)
.+.|..+.||.+|+.+|..+-+...+.=.+ +...+... -.|+.++||..|+..+.
T Consensus 134 Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~----v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 134 RLKDREPNVRIQAVLALSRLQGDPKDEECP----VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhccCchHHHHHHHHHHHHhcCCCCCccc----HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 777889999999999999987422211001 22222222 24788899999887654
No 239
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=92.51 E-value=0.19 Score=40.59 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHHHHh
Q 002596 810 EKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKDKLS 887 (902)
Q Consensus 810 e~~~~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 887 (902)
++-.+..|||.+|..+|-.+-+.+|.++..++++...+ .-++..+++.+..+|+.+. |.|...-..|-++....|+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-~~I~~tvk~tl~eFkrtH~-D~W~~~~~~Ft~~ql~~l~ 80 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-QPIRTTVKKTLSEFKRTHQ-DTWHEHKKKFTEDQLEDLE 80 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS-TTHHHHGGG--SSTTGGGS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCc-ccHHHHHHhCCHHHHHHHH
Confidence 45678999999999999888889999999999887643 3488999999999999997 5998877777777666553
No 240
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=24 Score=40.32 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=129.8
Q ss_pred hHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhh-c-CChHHHHHHHHHHHHHHhhcCc
Q 002596 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-A-ADRHIRSTVGTIVSVVVQLGGI 126 (902)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~-~~~~vr~~~a~~l~~i~~~~~~ 126 (902)
.+..|+.=..+ +.-.+-|..|+..||-.-+ .|+ .+.-..=.+.+++.|. | .++.+-+.+-.++..+...+
T Consensus 23 TI~kLcDRves--sTL~eDRR~A~rgLKa~sr-kYR---~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d-- 94 (970)
T KOG0946|consen 23 TIEKLCDRVES--STLLEDRRDAVRGLKAFSR-KYR---EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD-- 94 (970)
T ss_pred HHHHHHHHHhh--ccchhhHHHHHHHHHHHHH-HHH---HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC--
Confidence 34445554443 4567789999999974433 332 1222222345667775 3 36666666666666666554
Q ss_pred CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002596 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (902)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (902)
..|+++ +++...-..++.. ++.+.. -++.+..+++++...+-.||..+++.+..
T Consensus 95 -d~~~v~--------dds~qsdd~g~~i----ae~fik-------------~qd~I~lll~~~e~~DF~VR~~aIqLlsa 148 (970)
T KOG0946|consen 95 -DSPEVM--------DDSTQSDDLGLWI----AEQFIK-------------NQDNITLLLQSLEEFDFHVRLYAIQLLSA 148 (970)
T ss_pred -cchhhc--------ccchhhhHHHHHH----HHHHHc-------------CchhHHHHHHHHHhhchhhhhHHHHHHHH
Confidence 223322 1111122223222 121111 15678889999999999999999999999
Q ss_pred HhcccchhhHHhH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh-hhHHHHHHHHHhhhcCC---CH-HH
Q 002596 207 FIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-PHLRNLFEYMLQVNKDT---DD-DV 278 (902)
Q Consensus 207 ~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~l~~i~~~~~~~~~~~---~~-~v 278 (902)
++...|..+...+ |.-+..+..++.|..+.+|..++-.|..+....+..-+ -.++.+++.++..+... |. -|
T Consensus 149 lls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIV 228 (970)
T KOG0946|consen 149 LLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIV 228 (970)
T ss_pred HHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999887766543 44466777778888889999999999999987664321 12345555555554432 22 36
Q ss_pred HHHHHHHHHHhhcc
Q 002596 279 ALEACEFWHSYFEA 292 (902)
Q Consensus 279 ~~~al~~l~~l~~~ 292 (902)
...++.++..+.+.
T Consensus 229 veDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 229 VEDCLILLNNLLKN 242 (970)
T ss_pred HHHHHHHHHHHHhh
Confidence 67788888887766
No 241
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.26 E-value=1.2 Score=40.66 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchh----------------hhhhh
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~----------------~~~~~ 430 (902)
+|...+.++..++...-+.-.|.+++.+.+.+++ + ....+..+..|..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-S---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-T---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-c---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 5677788888888887555577777777777776 4 67788888888888776542 13344
Q ss_pred HHHHHHHHhhccCCCC----hHHHHHHHHHHHhhHHHHhhhhcCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002596 431 LSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (902)
Q Consensus 431 l~~i~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~v~~~a~~al 503 (902)
.+.++..+.+.+.... +.+...++.|++.+..|+... ... .++++.+++.+.+++ .+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-------~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-------LIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-------HHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-------HhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 5666666666554322 788999999999988876532 111 247888888886644 477777664
No 242
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.06 E-value=3.9 Score=38.99 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhh
Q 002596 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (902)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 257 (902)
....++.+++.+.+++..+|..|++.+...+... +... ...++.++.+..|+++.+|..|...+..+.+.++..+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---LvnP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG---LVNP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---CCCh-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567888999999999999999999999988642 1110 12367788888899999999999999999999988876
Q ss_pred hhHHHHHHHHHhh----hcCCCHHH---HHHHHHHHHHhhccCCchhhHHhhhhhhHHH
Q 002596 258 PHLRNLFEYMLQV----NKDTDDDV---ALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (902)
Q Consensus 258 ~~l~~i~~~~~~~----~~~~~~~v---~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ 309 (902)
..+.+-+...... ..+..... ....+..|.++.+. .++.-+.++..++..
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~--~r~~R~~Fl~~l~k~ 138 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS--NRKSRRKFLKSLLKQ 138 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhc--ccHhHHHHHHHHHHH
Confidence 6544444433322 12211111 34445666666663 223333444444443
No 243
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.98 E-value=13 Score=43.65 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHHHHhhc--C-----------cC---ch-HHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccc
Q 002596 105 ADRHIRSTVGTIVSVVVQLG--G-----------IA---GW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (902)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~--~-----------~~---~w-~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~ 167 (902)
.++.+|.++...++.++... . .. .+ +.+...+.......+...+..++.+|+.+-.
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 56788998888888887653 1 01 11 2333444444445566778888888876532
Q ss_pred cCCCCCCCcchhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002596 168 SDVPGLAECPINIFLPRLLQFFQSP---HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (902)
Q Consensus 168 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~ 244 (902)
+..++.+...+.+. ...+|..|+.+|..+....|....+.+ ++.+.+. ..+.++|..|+..
T Consensus 520 -----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I~~n~--~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 520 -----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPIFMNT--TEDPEVRIAAYLI 583 (618)
T ss_dssp -----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHHHH-T--TS-HHHHHHHHHH
T ss_pred -----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHHhcCC--CCChhHHHHHHHH
Confidence 45677888888766 678999999999988776554443322 3333221 2356799988766
Q ss_pred HHH
Q 002596 245 FNL 247 (902)
Q Consensus 245 l~~ 247 (902)
|..
T Consensus 584 lm~ 586 (618)
T PF01347_consen 584 LMR 586 (618)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 244
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.93 E-value=0.26 Score=33.20 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhH
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (902)
.+|.+++.+.++++.++..|+|+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6888999999999999999999999886
No 245
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.76 E-value=24 Score=38.85 Aligned_cols=241 Identities=15% Similarity=0.093 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC----CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCH
Q 002596 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF----PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (902)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~----p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~ 88 (902)
.++...++++.++.+..+ -||. -..|.++... .+|...+..||...++..-.-|-+ -+|++.+.......+.
T Consensus 9 ~~~s~~~if~k~Q~s~aG-hrk~-~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil--~fl~~f~~Y~~~~dpe 84 (885)
T COG5218 9 SLESMQLIFNKIQQSSAG-HRKS-LAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRIL--SFLKRFFEYDMPDDPE 84 (885)
T ss_pred HHHHHHHHHHHHhhhhhh-HHHH-HHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHH--HHHHHHHHhcCCCChh
Confidence 445566666666655443 3433 3344443332 345566666775433333333322 2444555533333222
Q ss_pred --hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc---CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhch
Q 002596 89 --SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 89 --~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~---~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
+..+.+...++.++.+++..||....++++.+...-.+ ..+..++..|.+-+-+-.+.+|..|+.+|...-+...
T Consensus 85 g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 85 GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 22344445566677788999999999999998765422 3456677777777777788999999999977654322
Q ss_pred hccccCCCCCCCcchhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHH
Q 002596 164 QVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (902)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~ 242 (902)
.. -+.+...+...+ +||+.+||..|+--+..--. -.+.++..+.|-+...|+.+.
T Consensus 165 ne------------en~~~n~l~~~vqnDPS~EVRr~allni~vdns------------T~p~IlERarDv~~anRr~vY 220 (885)
T COG5218 165 NE------------ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNS------------TYPCILERARDVSGANRRMVY 220 (885)
T ss_pred Ch------------HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCC------------cchhHHHHhhhhhHHHHHHHH
Confidence 11 133344444444 46788999988654322111 133344445555555555433
Q ss_pred -HHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 002596 243 -AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (902)
Q Consensus 243 -~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~ 285 (902)
.+|-.+.......+.+++- +++ -.+.+.+.+++-.+.+.
T Consensus 221 ~r~Lp~iGd~~~lsi~kri~-l~e---wgl~dRe~sv~~a~~d~ 260 (885)
T COG5218 221 ERCLPRIGDLKSLSIDKRIL-LME---WGLLDREFSVKGALVDA 260 (885)
T ss_pred HHHhhhhcchhhccccceeh-hhh---hcchhhhhhHHHHHHHH
Confidence 3454554444444444433 222 23445555555444443
No 246
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=91.75 E-value=0.76 Score=37.61 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHHHHhhcCc---chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhc
Q 002596 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG 422 (902)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~ 422 (902)
+.|.+|..|+..+..++..++. .+-+.+...+.+.+.|+. .++..+++|+..|..+...
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999975 456777887777777643 2388999999999988643
No 247
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.72 E-value=7.8 Score=40.62 Aligned_cols=202 Identities=16% Similarity=0.111 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHhhcCc--chh-h--------hhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh----hhH
Q 002596 367 LRKCSAAALDVLSNVFGD--EIL-P--------TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHL 431 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~--~~~-~--------~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~l 431 (902)
+.+.....++.+...-+. +.+ . ..-|++ +.+..+| +..+..|+..++.++........ ..+
T Consensus 73 ~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-~ll~~~D---~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 73 TVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-KLLDRND---SFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-HH-S-SS---HHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-HHhcCCC---HHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 556666667666665542 111 1 233333 4777777 99999999999999887654433 455
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHh-----cCCC--HHHHHHHHHH
Q 002596 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRI-----LDTN--KRVQEAACSA 502 (902)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l-----~d~~--~~v~~~a~~a 502 (902)
+.++..+...+++++..++..++.+++.+...-. ....+ ...++.+...+ .++. ..++-.++.+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-------~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-------YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-------HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-------hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence 6666666666666666778888899888864211 11111 44555555555 2333 3444455544
Q ss_pred HHHH--HHHhcccchHhHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCC
Q 002596 503 FATL--EEEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSD 579 (902)
Q Consensus 503 l~~l--~~~~~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 579 (902)
+--+ .+.....+..+. +++.+...++.. ++++.+.++.++.+++......+. +..+..=++.+++.+..-.-.|
T Consensus 222 lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~-~~mv~~~~l~~l~~L~~rk~~D 298 (312)
T PF03224_consen 222 LWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI-ELMVLCGLLKTLQNLSERKWSD 298 (312)
T ss_dssp HHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH-HHHHHH-HHHHHHHHHSS--SS
T ss_pred HHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH-HHHHHccHHHHHHHHhcCCCCC
Confidence 4432 222222232211 777777777654 567888888888887765443222 1222222334445554433344
Q ss_pred cch
Q 002596 580 KDL 582 (902)
Q Consensus 580 ~~~ 582 (902)
+++
T Consensus 299 edl 301 (312)
T PF03224_consen 299 EDL 301 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 248
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.86 E-value=40 Score=41.69 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=53.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
.+..+++.|++.+-.|...+|-+|.+++...+. ..+++ ...++.+...++..+..+-..++.+|.+++..
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~------DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE------DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHH------HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 677888889888888888888888888765442 23333 34667777778888888988999999998764
No 249
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.74 E-value=27 Score=37.62 Aligned_cols=169 Identities=14% Similarity=0.037 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhh----------hhcCCc-ch
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----------DIGHQN-GR 474 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----------~~~~~~-~~ 474 (902)
-..-..++.++..+...+++.|..+...=+|.++..+-+....+|..|..+.......+.+ ..+... ..
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 4455667778888888888888777776777777777778888998876666555443321 001000 11
Q ss_pred hhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcc
Q 002596 475 EQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (902)
Q Consensus 475 ~~~~~il~~l~~~l~d-~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 553 (902)
.+.+.+.+.+...+.+ .+.......-.++..+...-.-.--+++.+.+.....+++..+..++..++.+...++.....
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555555555 222222233333333332111233467888888888899988888999999999999886654
Q ss_pred cCC-chhhhhhhhHHHHHHHhc
Q 002596 554 ELN-QPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 554 ~~~-~~~~~~~ll~~l~~~l~~ 574 (902)
... .++.+..++.++...++.
T Consensus 308 ~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 308 NELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred CccccHHHHHHHHHHHHHHhCc
Confidence 332 345666666666655554
No 250
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=44 Score=39.64 Aligned_cols=92 Identities=9% Similarity=0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcccchh---------hHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhhhhhH-HHH
Q 002596 195 SLRKLSLGSVNQFIMLMPSA---------LFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNL 263 (902)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~---------~~~~~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~i 263 (902)
.-...++.+|.+++...|+- +..+| +.++..+ ...++++.+.+++++..+..+.+.. .... ...
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F----~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv-~~~a~~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNF----PLLITYLRCRKHPKLQILALQVILLATANKECV-TDLATCNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhccc----HHHHHHHHHcCCchHHHHHHHHHHHHhcccHHH-HHHHhhhH
Confidence 34567888999988877741 22233 2333322 2456678888888887766544322 1111 122
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
+..++.. -++.+..|..+++.+.++++.
T Consensus 1815 L~~LL~l-LHS~PS~R~~vL~vLYAL~S~ 1842 (2235)
T KOG1789|consen 1815 LTTLLTL-LHSQPSMRARVLDVLYALSSN 1842 (2235)
T ss_pred HHHHHHH-HhcChHHHHHHHHHHHHHhcC
Confidence 2333333 345677899999999999876
No 251
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.34 E-value=12 Score=35.57 Aligned_cols=75 Identities=17% Similarity=0.115 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 002596 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 131 ~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (902)
..++.+.+++.+++..+|..|+.++..+.+..-.+ + ...+|.++.+..|+++.+|..|...+..+.+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn----------P--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVN----------P--KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC----------h--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 34555666677777777888887777776632110 1 45677777777778888888888877777665
Q ss_pred cchhhHH
Q 002596 211 MPSALFV 217 (902)
Q Consensus 211 ~~~~~~~ 217 (902)
.+.-+..
T Consensus 76 ~~s~v~~ 82 (187)
T PF12830_consen 76 HESLVES 82 (187)
T ss_pred hHHHHHH
Confidence 5544333
No 252
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.31 E-value=0.6 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 479 KVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 479 ~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
..++.|++.+.+++..|+..|+++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999986
No 253
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=90.11 E-value=34 Score=37.72 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHhhcCcCchHHHHH-HHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHH
Q 002596 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (902)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~-~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (902)
-..|-.+|.+++.++..-+...+..++. .|..+++++....|..|..++...+......-.. .....+.+.|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L 173 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHH
Confidence 3457788999999998877788888887 5999999999999999999998888876543211 1125677778
Q ss_pred HHHhcCCC-----------HHHHHHHHHHHHHHhc
Q 002596 186 LQFFQSPH-----------TSLRKLSLGSVNQFIM 209 (902)
Q Consensus 186 ~~~l~~~~-----------~~vr~~al~~l~~~~~ 209 (902)
...|.++. ..+|..+-..+..+..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887431 2456666666666653
No 254
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=89.90 E-value=37 Score=37.90 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCC
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 446 (902)
-|..|+.-+......++-.-++.+......++..+.+ ...|.+|+..+..++++........-...+..+...-.+++
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p--~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQP--SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDD 83 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCC--HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchh
Confidence 5777888887777777766677788888888876543 67899999999999887654211111112222322222333
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcC-------------CCH---HHHHHHHHHHHHHHHHh
Q 002596 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD-------------TNK---RVQEAACSAFATLEEEA 510 (902)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-------------~~~---~v~~~a~~al~~l~~~~ 510 (902)
-..|-.|+.+|..=++.+..+ .+...+.+..-++.+.+.... .+. ......+..+-.|+.++
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~--~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFF--EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhc--ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 456666666665444333211 001122222222222210000 000 00111222222222222
Q ss_pred ----cccch-HhHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcch-h
Q 002596 511 ----AEELA-PRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDL-F 583 (902)
Q Consensus 511 ----~~~~~-p~l~~i~~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~-~ 583 (902)
...+. ..+..++..++..-... ........+..+..++....-. .+.+..++..|....... .+ .
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~-----~l~~ 233 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV-----SLCK 233 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc-----ccch
Confidence 22232 45556666655553322 2333445555555554421100 133334444333332211 22 3
Q ss_pred hHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccc-
Q 002596 584 PLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQS- 662 (902)
Q Consensus 584 ~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~- 662 (902)
.+-+++..+++.- .-...+..+..++.+. +.... .+.....+|+..++.+.-+.|+.-.+-++.+
T Consensus 234 ~~w~~m~nL~~S~------~g~~~i~~L~~iL~~~-------~~~~~-~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 234 PSWRTMRNLLKSH------LGHSAIRTLCDILRSP-------DPQNK-RDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred hHHHHHHHHHcCc------cHHHHHHHHHHHHccc-------Ccccc-ccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 4445555554321 1123344444444211 11111 1456667899999888887765544443332
Q ss_pred -hHHHHHHHHhcCCCh
Q 002596 663 -NLRDMLLQCCMDDAS 677 (902)
Q Consensus 663 -~l~~~l~~~~~~~~~ 677 (902)
.+++-+...++..++
T Consensus 300 ~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 377777777775544
No 255
>PF05536 Neurochondrin: Neurochondrin
Probab=89.57 E-value=43 Score=38.12 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=86.8
Q ss_pred hhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhcccchhhHHhHH-HHH
Q 002596 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSMD-QYL 223 (902)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~~-~~l 223 (902)
..+.-|+.+|..+|. .+.+..+ +.+-.-+|.++..+.+.+. .+...++.||..++.. |+.-...+. .-+
T Consensus 72 ~~~~LavsvL~~f~~--~~~~a~~------~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v 142 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR--DPELASS------PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAV 142 (543)
T ss_pred HHHHHHHHHHHHHcC--ChhhhcC------HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCH
Confidence 567778888888887 3333222 3346678999999988766 9999999999999844 322111111 234
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhh----hhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL----EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 224 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~----~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
+.++..+.+ .+.....++..+..+........ ...+..+++.+-..........+...++++..+...
T Consensus 143 ~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 143 PALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 555555443 44567778888877765444211 123445566655555555556678889998887655
No 256
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.56 E-value=2.4 Score=34.20 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=54.1
Q ss_pred HHHHHHHh-hCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 002596 222 YLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (902)
Q Consensus 222 ~l~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~ 287 (902)
+|..+..+ ...++.++|..++.|+..++....+.+..-++.++..+-....+.++++...|++.+.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34444444 3456789999999999999999999999999999999888888888888888887653
No 257
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.56 E-value=1.6 Score=37.20 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=49.3
Q ss_pred HHHHHHHHHh-ccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcch--hhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002596 131 ELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (902)
Q Consensus 131 ~ll~~L~~~l-~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~vr~~al~~l~~~ 207 (902)
+++..|..++ .+.++.+...|+.=|+.+++..+... ..+ -..-..+++++++++++||..|+.|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr---------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR---------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH---------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH---------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5777777777 34466777778888888888765521 111 22345689999999999999999999887
Q ss_pred hc
Q 002596 208 IM 209 (902)
Q Consensus 208 ~~ 209 (902)
+.
T Consensus 114 m~ 115 (119)
T PF11698_consen 114 MV 115 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 258
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.41 E-value=7.6 Score=34.55 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=59.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH-H-HHHHHHHHhcCCC-CCccchhHhhhHHHHHHHHHHhh
Q 002596 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL-S-DFLDIAAKQLNTP-KLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~l~~~l~~~-~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
.....|...+++.++.+.-.|+.++..++++||..|...+ . .++..+.+.+... .. +..||..+...+...+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~--~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKY--DPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHh
Confidence 3667777888889999999999999999999998775433 2 5666677777653 22 5689999998888888776
Q ss_pred hh
Q 002596 740 RQ 741 (902)
Q Consensus 740 ~~ 741 (902)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 64
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.87 E-value=25 Score=34.63 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
--.|+.|++.|..+.. +.-+..+...+.+++...|..+..++||+-.. .-++.+.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~---------------~ai~~L~ 224 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP---------------AAIPSLI 224 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch---------------hhhHHHH
Confidence 3457778777776542 22366677888899999999999999998642 3356666
Q ss_pred HHhcC--CCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHH
Q 002596 486 KRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (902)
Q Consensus 486 ~~l~d--~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al 544 (902)
+.|.| .++-||-.|+.||+.+... ..++.|...+.+...-+...+.-++
T Consensus 225 k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~val 275 (289)
T KOG0567|consen 225 KVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVAL 275 (289)
T ss_pred HHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66665 4689999999999988752 4555555555554433333333333
No 260
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.85 E-value=37 Score=36.41 Aligned_cols=119 Identities=21% Similarity=0.136 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHH
Q 002596 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK 486 (902)
Q Consensus 407 ~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 486 (902)
..-.+|+..|-.+++...-.+.-.-..++..+++.|+-.+..+-......+.+++-+.... ..---..++..+++
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK-----~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK-----IVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch-----HHHHhccHHHHHHH
Confidence 3445667777778877665555455668888999998877777777766776666543211 11122457778888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcccchH--hHHHHHHHHHHHHhcc
Q 002596 487 RILDTNKRVQEAACSAFATLEEEAAEELAP--RLEIILQHLMMAFGKY 532 (902)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~~~~~~p--~l~~i~~~l~~~l~~~ 532 (902)
.+.-.++..+......+-++.-.. .+.| .-..++|.+...+++.
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~--glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDS--GLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccc--cccHHHhhccchHHHHHHhCCc
Confidence 888788888888777776664332 2222 1234566666666654
No 261
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=1.2 Score=41.60 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh---
Q 002596 664 LRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR--- 740 (902)
Q Consensus 664 l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~--- 740 (902)
.++++...+.+.+..-|-.|-.-+-|+....++.+.|.+++++..+...|... +.++...+...|.++....+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr----d~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR----DDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHhccccc
Confidence 56667777766555556666666888888889999999999999999999887 67888888888888876554
Q ss_pred hhhhhHHHHHHHHHH
Q 002596 741 QEISPIVMTVVLCLV 755 (902)
Q Consensus 741 ~~~~~~~~~il~~l~ 755 (902)
..+.||+.++++.+.
T Consensus 191 ~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLN 205 (262)
T ss_pred hhhhhHHHHhhhhhh
Confidence 678899988886553
No 262
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=88.31 E-value=77 Score=39.45 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhchHhhHH--hHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh--hhhhhhHH
Q 002596 672 CMDDASDVRQSAFALLGDLARVCPVHLQA--RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA--RQEISPIV 747 (902)
Q Consensus 672 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~--~~~~~~~~ 747 (902)
++........+.+.+|-+++.+|...=.. .++..+-.|...|..+.......+-++|---|-.+..+. .+..+..+
T Consensus 447 l~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQIL 526 (2195)
T KOG2122|consen 447 LRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQIL 526 (2195)
T ss_pred HHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHH
Confidence 44444334455667777777777532222 234555566666665421111122222221121111111 11121211
Q ss_pred --HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcCh-H-HHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Q 002596 748 --MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHM-E-HFMQPWCIALSMIRDDTEKEDAFRGLCAMVK 823 (902)
Q Consensus 748 --~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~-~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~ 823 (902)
..+|..|+..|...+ -.+.-|+|.+|..|...+|..-. ++ + ..++.+.+.++. +.......+..+|.+++.
T Consensus 527 R~~NCLq~LLQ~LKS~S---LTiVSNaCGTLWNLSAR~p~DQq-~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 527 RRHNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARSPEDQQ-MLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHhhHHHHHHHHhhhcc---eEEeecchhhhhhhhcCCHHHHH-HHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhc
Confidence 246777777777654 57888999999999988875321 11 1 112333333333 333334455566666666
Q ss_pred cCc
Q 002596 824 ANP 826 (902)
Q Consensus 824 ~~p 826 (902)
..|
T Consensus 602 ~RP 604 (2195)
T KOG2122|consen 602 FRP 604 (2195)
T ss_pred CCc
Confidence 543
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.24 E-value=8.4 Score=34.70 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHhc
Q 002596 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~ 552 (902)
.-...+..+.+.+.+.++.|+..|...+..++++|+..+...+ ..+++.|.+++.. ....++..+++.|...+...+
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999999999987664332 4567777777776 455677778888888777766
Q ss_pred c
Q 002596 553 F 553 (902)
Q Consensus 553 ~ 553 (902)
.
T Consensus 114 ~ 114 (144)
T cd03568 114 N 114 (144)
T ss_pred C
Confidence 4
No 264
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=88.17 E-value=19 Score=37.47 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 002596 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (902)
Q Consensus 447 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~ 526 (902)
..-++-|...+++|.++++.. ....+.+-+....|.+..||..|..-|..||.. ..++.+.+.+.
T Consensus 38 ~k~k~lasq~ip~~fk~fp~l---------a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~ 102 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSL---------ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLV 102 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchh---------hhHHHHhhhccccccchhhHHHHHhccchhccC------chhhhhHHHHH
Confidence 345666778999999988643 456777888888899999999999999988874 33444555555
Q ss_pred HHHh
Q 002596 527 MAFG 530 (902)
Q Consensus 527 ~~l~ 530 (902)
++|+
T Consensus 103 qLLn 106 (460)
T KOG2213|consen 103 QLLN 106 (460)
T ss_pred HHHH
Confidence 5555
No 265
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=87.20 E-value=1.4 Score=35.71 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 463 (902)
-..|.++++.|+++....+-.+.+++|.++..+....+| ...++..+-.+++.|-+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 457999999999999999988889999999999888887 556888888888887654
No 266
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.15 E-value=18 Score=32.31 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhc------cchhhHHHHHHHHHHHH
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~------~~~~~~~~~~~al~~l~ 548 (902)
-...+..+.+.+.++++.|+..|...|..++++|+..+...+ ..++..+++++.. ....++..+++.+...+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 357888899999999999999999999999999987764322 3456666666642 34567777788888777
Q ss_pred HHhcc
Q 002596 549 DAVGF 553 (902)
Q Consensus 549 ~~~~~ 553 (902)
...+.
T Consensus 116 ~~f~~ 120 (139)
T cd03567 116 LELPH 120 (139)
T ss_pred HHhcc
Confidence 76653
No 267
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.51 E-value=70 Score=37.06 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHHhhc--CcCch-----HHHHHHHHHHhc----cCChhhhhHHHHHHHHHHhhchhccccCCCCC
Q 002596 105 ADRHIRSTVGTIVSVVVQLG--GIAGW-----LELLQALVTCLD----SNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (902)
Q Consensus 105 ~~~~vr~~~a~~l~~i~~~~--~~~~w-----~~ll~~L~~~l~----~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~ 173 (902)
++..+|.++...++.+++.. ....+ .++++.+.+.+. ..+...+...+.+|+.+-.
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------------- 475 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------------- 475 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------------
Confidence 36678898888888888753 22222 355555555443 3455566677777754322
Q ss_pred CCcchhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002596 174 AECPINIFLPRLLQFFQ---SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (902)
Q Consensus 174 ~~~~~~~l~~~l~~~l~---~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~ 247 (902)
+..++.+...+. ..+..+|..|+.+|..+....|....+.+ ++.+.+ .+.+.++|..|+..|..
T Consensus 476 -----~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i~~n--~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 476 -----PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPIYLN--RAEPPEVRMAAVLVLME 542 (574)
T ss_pred -----hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHHHcC--CCCChHHHHHHHHHHHh
Confidence 334444555554 23678999999999988876666544432 222211 13457899988877653
No 268
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.88 E-value=13 Score=33.37 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHhc
Q 002596 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~-~~~~~~~~~~~al~~l~~~~~ 552 (902)
.-...+..+.+.+..+++.|+..|...|..++++|+..+...+ ..+++.+.+++.. ....++..+++.+...+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3467888999999999999999999999999999987653322 4566666666653 445677777788877777665
Q ss_pred cc
Q 002596 553 FE 554 (902)
Q Consensus 553 ~~ 554 (902)
..
T Consensus 118 ~~ 119 (142)
T cd03569 118 NK 119 (142)
T ss_pred CC
Confidence 43
No 269
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=44 Score=34.18 Aligned_cols=310 Identities=11% Similarity=0.127 Sum_probs=158.1
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC--CCHHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~al~~ 203 (902)
.+..+-++..+. +..+++..+..-++.+|..+...-++.++- +-+..++..|.. .+.++-...+.+
T Consensus 103 ~ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da-----------~g~~vvv~lL~~~~~~~dlt~~~~~~ 170 (461)
T KOG4199|consen 103 NGAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDA-----------EAMAVVLKLLALKVESEEVTLLTLQW 170 (461)
T ss_pred CCCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhcc-----------ccHHHHHHHHhcccchHHHHHHHHHH
Confidence 344455554444 466677777778888888887765554432 123455566654 366777777777
Q ss_pred HHHHhcccchhhHHhHH-HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHhhCh-----hhhhhhHHHHH-----HHHHhhh
Q 002596 204 VNQFIMLMPSALFVSMD-QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRP-----SFLEPHLRNLF-----EYMLQVN 271 (902)
Q Consensus 204 l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~-----~~~~~~l~~i~-----~~~~~~~ 271 (902)
+..-.-.....-...+. .+++.+.+.++. ....+.+..+.++..+..... .....|-..+. ..+.+.+
T Consensus 171 v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal 250 (461)
T KOG4199|consen 171 LQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEAL 250 (461)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHH
Confidence 76544221111111122 345555544432 223455666677666542111 01112222222 2223332
Q ss_pred c-CCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhh--HHHHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccC
Q 002596 272 K-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL--VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (902)
Q Consensus 272 ~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l--~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 348 (902)
+ ..|+++-...+..+..++-.. +..+. +... +..++..|....
T Consensus 251 ~A~~dp~~L~~l~~tl~~lAVr~---E~C~~-I~e~GGl~tl~~~i~d~n------------------------------ 296 (461)
T KOG4199|consen 251 QAGIDPDSLVSLSTTLKALAVRD---EICKS-IAESGGLDTLLRCIDDSN------------------------------ 296 (461)
T ss_pred HccCCccHHHHHHHHHHHHHHHH---HHHHH-HHHccCHHHHHHHHhhhc------------------------------
Confidence 2 123445445555555543220 00000 0000 112222222100
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHhhcCcch----------hhhhHHHHHHhhccCCCCchHHHHHHHHHHHH
Q 002596 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI----------LPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (902)
Q Consensus 349 ~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~ 418 (902)
+ -..|..+-.+++.+....|.+- .+.++....++. .+ +.+-+.++.++..
T Consensus 297 --------~-------~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~---p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 297 --------E-------QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DD---PLVIQEVMAIISI 356 (461)
T ss_pred --------h-------hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CC---hHHHHHHHHHHHH
Confidence 0 1246667777776666666421 233333333322 23 8888888888888
Q ss_pred HHhcchhhhhhhHHH-HHHHHhhccC-CC-ChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHH
Q 002596 419 IAEGCIKGLYPHLSE-IVAFLIPLLD-DK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (902)
Q Consensus 419 l~~~~~~~~~~~l~~-i~~~l~~~l~-d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v 495 (902)
++-..++.-...++. .-...++.++ +| ...|+..+||.+.++...-... ....+..=+..|+......++.+
T Consensus 357 l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-----~~~~l~~GiE~Li~~A~~~h~tc 431 (461)
T KOG4199|consen 357 LCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-----RTILLANGIEKLIRTAKANHETC 431 (461)
T ss_pred HHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-----cchHHhccHHHHHHHHHhcCccH
Confidence 887666554444433 2222334433 33 3478999999999998765542 34455555666666666667777
Q ss_pred HHHHHHHHHHH
Q 002596 496 QEAACSAFATL 506 (902)
Q Consensus 496 ~~~a~~al~~l 506 (902)
+..|-.+|..+
T Consensus 432 e~~akaALRDL 442 (461)
T KOG4199|consen 432 EAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 270
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.84 E-value=4.5 Score=34.61 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHhhcc-CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 434 IVAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 434 i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
++..+...| .+.++.+-..||.=+|.|+++.+. ....+ -..=..+++.|.++++.||..|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555 344778888899999999998864 22232 2345566788889999999999999998764
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.68 E-value=11 Score=33.60 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=70.3
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002596 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (902)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (902)
.+++...-..++..|.. . +..=.+.+..|..-++++++.++..|+.+|..+++.++..+..++. -..++
T Consensus 14 ~~~D~~~il~icd~I~~----~-~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl 82 (133)
T cd03561 14 EEPDWALNLELCDLINL----K-PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFL 82 (133)
T ss_pred CCccHHHHHHHHHHHhC----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHH
Confidence 34555544444444332 1 3344678889999999999999999999999999999886543321 13556
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHhcccc
Q 002596 183 PRLLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 183 ~~l~~~l~~---~~~~vr~~al~~l~~~~~~~~ 212 (902)
..+...+.. .+..||..++..+..+....+
T Consensus 83 ~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 83 LELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 667777764 478999999999999886654
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=85.66 E-value=11 Score=36.93 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=56.9
Q ss_pred cccHHHHH-HHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc
Q 002596 364 VWNLRKCS-AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (902)
Q Consensus 364 ~~~~r~~a-~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 442 (902)
+|.+.... ..+++.+.... +...+.+.+++.|++. |..|.+ +.++...... ..++.++..+...+
T Consensus 99 ~W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W~~s~~~--w~rR~~-~v~~~~~~~~------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 99 NWATCDSLCSKLLGPLLKKH-----PEALELLEKWAKSDNE--WVRRAA-IVMLLRYIRK------EDFDELLEIIEALL 164 (213)
T ss_dssp CHHHHHHHTHHHHHHHHHHH-----GGHHHHHHHHHHCSSH--HHHHHH-HHCTTTHGGG------CHHHHHHHHHHHCT
T ss_pred cchhhhHHHHHHHHHHHHhh-----HHHHHHHHHHHhCCcH--HHHHHH-HHHHHHHHHh------cCHHHHHHHHHHHc
Confidence 45544333 44444443322 5677888899998873 555554 4333222221 56677888888889
Q ss_pred CCCChHHHHHHHHHHHhhHHHHh
Q 002596 443 DDKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
.|++..||.+..|+|..++...+
T Consensus 165 ~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999998887544
No 273
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.56 E-value=56 Score=35.10 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=80.1
Q ss_pred cchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhh-----hhhhHHHHHHHhcCCCCCcchhhHHH
Q 002596 513 ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL-----DILMPPLIAKWQQLPNSDKDLFPLLE 587 (902)
Q Consensus 513 ~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-----~~ll~~l~~~l~~~~~~~~~~~~~l~ 587 (902)
.+..|+..+.. .+...+.+. ..++|+|+++.-.-.+. +|. ..++|.+...++...+.+.-+..++-
T Consensus 501 ~FidyvgdLa~----i~~nd~~E~--F~~EClGtlanL~v~dl---dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 501 MFIDYVGDLAG----IAKNDNSES--FGLECLGTLANLKVTDL---DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred HHHHHHHHHHH----HhhcCchHH--HHHHHHHHHhhcccCCC---CHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 34555555543 333332222 55788888886432222 222 35778888887765544433334333
Q ss_pred HHHHHHHHhcc--ccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhcc-chH
Q 002596 588 CFTSIAQALGA--GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQ-SNL 664 (902)
Q Consensus 588 ~l~~i~~~~g~--~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~-~~l 664 (902)
.+|.++.-..- -+.| ..+++.++..++..+. |.+++...+-++-.+... +....++-+ ...
T Consensus 572 ~~GT~a~d~~cA~Lla~--a~~i~tlieLL~a~Qe------------DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~ 635 (791)
T KOG1222|consen 572 ACGTMARDLDCARLLAP--AKLIDTLIELLQACQE------------DDEFVVQIIYVFLQFLKH--ELTRRLMIKETAL 635 (791)
T ss_pred HhhhhhhhhHHHHHhCc--cccHHHHHHHHHhhcc------------cchHHHHHHHHHHHHHHH--HHHHHHHHhhccc
Confidence 34443332211 1111 2467777777776441 446665555444444332 222233322 234
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 002596 665 RDMLLQCCMDDASDVRQSAFALLGDLARV 693 (902)
Q Consensus 665 ~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 693 (902)
-..+...+.|.+.++|..+=.++.-++.+
T Consensus 636 ~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 636 GAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 45566777888999988666655555544
No 274
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.54 E-value=27 Score=31.39 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhccch-h---hHHHHHHHHHHH
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R---NLRIVYDAIGTL 547 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~~~~-~---~~~~~~~al~~l 547 (902)
...-..++..+-+.|..+++.++..|...+..++++|+..+...+ ..++..+.+++..... . ++..+++.|...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 345578899999999999999999999999999999987765443 4567777777664432 2 677888888888
Q ss_pred HHHhccc
Q 002596 548 ADAVGFE 554 (902)
Q Consensus 548 ~~~~~~~ 554 (902)
+...+..
T Consensus 117 ~~~f~~~ 123 (140)
T PF00790_consen 117 AEAFKSD 123 (140)
T ss_dssp HHHTTTS
T ss_pred HHHHCCC
Confidence 7777443
No 275
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.78 E-value=1.1e+02 Score=37.86 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHHHHHHhhcC---cCchHHHHHHHHHHhccC---ChhhhhHHHHHHHHHHhhchhccccCCCCCCCcc
Q 002596 104 AADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (902)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~---~~~w~~ll~~L~~~l~~~---~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (902)
.+...+|...-.++-.|....+ ...|+.+++.|......+ ...+...+..+|..++.++-..+.. ..
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~-------sc 925 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT-------SC 925 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh-------HH
Confidence 4555566555566777766543 244999999988777665 3466677888998888877655432 34
Q ss_pred hhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcc
Q 002596 178 INIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIML 210 (902)
Q Consensus 178 ~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~ 210 (902)
+..++..+..+... .+.++-..|+..+..+..+
T Consensus 926 i~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 926 ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 56666666666543 4666767777666665443
No 276
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=84.70 E-value=29 Score=35.88 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHh--cchhhhhhhHHHHHHHHhhccCCCCh-HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHH
Q 002596 406 WKDREAAVLALGAIAE--GCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~ 482 (902)
|..-.+++.-+..... .......|+=..+...+-++|+-.-| -|...|+.+...+.+.+.+. ...+.+.-..+
T Consensus 25 WAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~----~L~~dl~i~~~ 100 (307)
T PF04118_consen 25 WADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD----GLAQDLPIYSP 100 (307)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH----HHHhhcHHHHH
Confidence 7766666555544444 11111223333456667777765444 67888888888887766532 34455566677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 483 ~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
.++..+......||..-...+..+.-..+..+.|.++.++-.++..+.+...+....+...+..+...++.+
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 788878877788888887777777766677889999999999999999877778887888888888887765
No 277
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.44 E-value=3.8 Score=36.88 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 002596 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (902)
Q Consensus 128 ~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~ 206 (902)
.=.+.+..|..-+.+.++.+...|+.+|..+++.++..+..++. -..++..+..++.+ .+..|+..++..+..
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA------SRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 33578888888999999999999999999999999987654432 26778888888888 688999999999999
Q ss_pred Hhcccc
Q 002596 207 FIMLMP 212 (902)
Q Consensus 207 ~~~~~~ 212 (902)
+....+
T Consensus 108 W~~~f~ 113 (144)
T cd03568 108 WADEFK 113 (144)
T ss_pred HHHHhC
Confidence 876543
No 278
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=84.20 E-value=24 Score=41.11 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=66.6
Q ss_pred chhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHH
Q 002596 633 DKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAK 711 (902)
Q Consensus 633 d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 711 (902)
.+..|..++.+++.++..-+.....+... .+++-|++|++ |.+..+...|+.+|-.+...++..+.+|++.++.++.+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t-~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQT-PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGR 159 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcC-hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 34567778888888888766666666553 67888888876 66778888999999999999999999999999999998
Q ss_pred hcCC
Q 002596 712 QLNT 715 (902)
Q Consensus 712 ~l~~ 715 (902)
.+.-
T Consensus 160 l~~W 163 (668)
T PF04388_consen 160 LLSW 163 (668)
T ss_pred HHHc
Confidence 8843
No 279
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.19 E-value=14 Score=31.96 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCcc---
Q 002596 644 LSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKE--- 720 (902)
Q Consensus 644 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~--- 720 (902)
+..|++..-.+...+. .++..|.+.+++.++.|+.-++.+|..++...+..|..++..=...+..+..-....|
T Consensus 22 ~~Eia~~t~~s~~~~~---ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 22 YEEIAKLTRKSVGSCQ---ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHHHcCHHHHH---HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 4455554444333332 3788899999999999999999999999999988998888765555444433332111
Q ss_pred ----chhHhhhHHHHHHHH
Q 002596 721 ----TVSVANNACWAIGEL 735 (902)
Q Consensus 721 ----~~~v~~~a~~alg~l 735 (902)
+..||..|-.++..+
T Consensus 99 Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 99 GDSLNEKVREEAQELIKAI 117 (122)
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 345666666555543
No 280
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.08 E-value=1.3e+02 Score=37.93 Aligned_cols=231 Identities=15% Similarity=0.123 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-cccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccC
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (902)
++.-+..+++.+.-.++..+..|..-+..+++.. .+...+.++.......+++.+.+..++....+++..+...+++.+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777888999998899888775 333333344444444556667777888889999999999999998
Q ss_pred CchhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccc------c
Q 002596 556 NQPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVA------A 628 (902)
Q Consensus 556 ~~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~------~ 628 (902)
. ||+..++|+....... .+..+ .++...+.. ...++..+.+-.++..-+..+.........+++ .
T Consensus 119 s--p~LK~li~~wl~~~~d---~~~~vs~aa~~sf~~---~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~ 190 (1312)
T KOG0803|consen 119 S--PFLKSLIPPWLGGQFD---LDYPVSEAAKASFKD---GFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL 190 (1312)
T ss_pred h--HHHHhhhhhhhheecc---cchHHHHHHHHHHHh---hcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence 8 9999999876542221 12222 222222221 222233332222222111111111111111111 0
Q ss_pred CCCCchh-----HHHHHhhhHHHHHHHHhhhHHhh--hcc-chH--HHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhh
Q 002596 629 GAQYDKE-----FVVCCLDLLSGLAEGLGSGIESL--VAQ-SNL--RDMLLQCCMDDASDVRQSAFALLGDLARVCPVHL 698 (902)
Q Consensus 629 ~~e~d~~-----~~~~al~~l~~l~~~~~~~~~~~--~~~-~~l--~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 698 (902)
..| +.+ +..+++-++..+....|..-.-. -+. ..+ -..+-..+++..+.++.+.+.++-.++......+
T Consensus 191 s~E-e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 191 SSE-ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred chH-HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 111 111 22345555555555544332111 000 001 1223344567888999988888888887766653
Q ss_pred HHhH-HHHHHHHHHhcCCC
Q 002596 699 QARL-SDFLDIAAKQLNTP 716 (902)
Q Consensus 699 ~~~~-~~~l~~l~~~l~~~ 716 (902)
.+.- ..+.+.......+.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~ 288 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDSL 288 (1312)
T ss_pred chhhhhHhhHHHHcccccc
Confidence 4433 34555555555444
No 281
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=84.07 E-value=24 Score=44.97 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=83.9
Q ss_pred hhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002596 424 IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (902)
Q Consensus 424 ~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al 503 (902)
...+..|++.++...-..+.++++.|+.-+......+...+. .-+-.+|+..|+..+.+.+..-...|...|
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd--------s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL 497 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD--------SYCQQEVVGALVTHIGSGNSQEVDAALDVL 497 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 344567888888888888899999999998888777666542 123357888888887655544446788889
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Q 002596 504 ATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 504 ~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~ 552 (902)
..+++..+..+.||- .++..++..+.+......+.+++.+..++-..+
T Consensus 498 ~~L~~~~~~~l~~fa-~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~ 545 (1426)
T PF14631_consen 498 CELAEKNPSELQPFA-TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDS 545 (1426)
T ss_dssp HHHHHH-HHHHHHTH-HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCc
Confidence 888887777777774 355556677777666777778888888876543
No 282
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=1.5e+02 Score=38.33 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHH-HHHHHHHHHHHHhcccCC
Q 002596 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLADAVGFELN 556 (902)
Q Consensus 478 ~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~-~~~~al~~l~~~~~~~~~ 556 (902)
.-.+..++..+..+++..|-.+..+++.++...+.. |++..+.+.+++.+.+.++.+.+ .-.-+++.+-+.+|.-..
T Consensus 875 ~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 875 SSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 334445556666778888888999999998876543 46666777777777776665555 445677888777765443
Q ss_pred chhhhhhhhHHHHHHHhcCCCCCcch-hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhcccccCCCCchh
Q 002596 557 QPVYLDILMPPLIAKWQQLPNSDKDL-FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKE 635 (902)
Q Consensus 557 ~~~~~~~ll~~l~~~l~~~~~~~~~~-~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~ 635 (902)
. ..+..-+..++..-+.. ..+.+ .-.+..++.+....|+-|..|....+..+...+-+.... ..+
T Consensus 953 ~-qhl~t~v~illal~~Ds--~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~-----------~~e 1018 (2067)
T KOG1822|consen 953 G-QHLNTSVSILLALATDS--TSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS-----------HVE 1018 (2067)
T ss_pred c-hhcccHHHHHHHHhhcC--CCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc-----------hhh
Confidence 2 33333222233222221 23344 345677778887778878778777777776655431100 112
Q ss_pred HHHHHh------hhHHHHHHHHhhhHHhhhcc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH
Q 002596 636 FVVCCL------DLLSGLAEGLGSGIESLVAQ-------SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL 702 (902)
Q Consensus 636 ~~~~al------~~l~~l~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 702 (902)
+..+.- +.++.++..+|+++.+-... .+.+-...-.+.++++.+...++.++-.+.-..+. .-.+
T Consensus 1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~ 1096 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNL 1096 (2067)
T ss_pred hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccH
Confidence 222211 22346666666655443321 11111111223456778888888888877765543 2345
Q ss_pred HHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHh
Q 002596 703 SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVK 738 (902)
Q Consensus 703 ~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~ 738 (902)
+.+++.+...+..+ ..-.|+....++-+++++
T Consensus 1097 ~~lV~~L~~~l~s~----~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSS----YLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHHhcch----hhhhhhhHHhhhhHHhHH
Confidence 67777777777776 334555555555555543
No 283
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=83.72 E-value=99 Score=36.40 Aligned_cols=72 Identities=7% Similarity=-0.045 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHcCchhhhhhHHHHhhH
Q 002596 767 SLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRA 839 (902)
Q Consensus 767 ~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~i~~~ 839 (902)
.++++....+.+.--... ...+-+..++-..++.++..++.+|+....+.+..++...++.+.+-.+.+++.
T Consensus 508 T~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~ 579 (947)
T COG5657 508 TTREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQL 579 (947)
T ss_pred HHHHHHHHHHHhcccccc-cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHH
Confidence 445555444433332221 223357778888899999999999999999999999999887665533333333
No 284
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.75 E-value=18 Score=32.09 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhccch-h-hHHHHHHHHHHHHHH
Q 002596 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R-NLRIVYDAIGTLADA 550 (902)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~~~~-~-~~~~~~~al~~l~~~ 550 (902)
..-...+..+.+.+.++++.++..|...+..++++|+..+...+ ..+++.|.+++..... . ++..++..+...+..
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999999999987764332 3467777777765432 2 666777777777777
Q ss_pred hcc
Q 002596 551 VGF 553 (902)
Q Consensus 551 ~~~ 553 (902)
.+.
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 654
No 285
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.70 E-value=81 Score=39.75 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=127.4
Q ss_pred CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhh----hcCChHHHHHHHHHHHHHH
Q 002596 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL----GAADRHIRSTVGTIVSVVV 121 (902)
Q Consensus 46 ~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l----~~~~~~vr~~~a~~l~~i~ 121 (902)
+.+|+...-.+... +.+.++|-+..-.....++..|.. ++..+ .+.+..+-...-..+..+.
T Consensus 1034 q~~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~------------if~i~~~aA~~~~~~iv~~~fe~v~~i~ 1099 (1514)
T KOG0929|consen 1034 QKDFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKN------------IFKIFTTAASDSSKNIVELAFETVSKIL 1099 (1514)
T ss_pred HHhhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhH------------HHHHHHHhhccchhhHHHHhHHHHHHHH
Confidence 44555555566554 678889988888888888888853 23322 2334444444444444444
Q ss_pred hhcCcC-------chHHHHHHHHHHhcc-CChhhhhHHHHHHHHHHhhchhc-----cccCCCCCCCcchhhhHHHHHH-
Q 002596 122 QLGGIA-------GWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-----LDSDVPGLAECPINIFLPRLLQ- 187 (902)
Q Consensus 122 ~~~~~~-------~w~~ll~~L~~~l~~-~~~~~r~~al~~L~~l~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~- 187 (902)
...+.. .+.+.++.+.....+ ..+..-..++..+...+....+. +........+......+|.+++
T Consensus 1100 ~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l 1179 (1514)
T KOG0929|consen 1100 QELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL 1179 (1514)
T ss_pred HHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh
Confidence 433222 233444444444332 22333333444443333332221 1100000001112333444433
Q ss_pred --HhcCCCHHHHHHHHHHHHHHhcccchhhHHhH-HHHHHHHHHhhC----CCC-----H---HHHHHHHHHHHHHHhhC
Q 002596 188 --FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSN----DPS-----A---EVRKLVCAAFNLLIEVR 252 (902)
Q Consensus 188 --~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~----~~~-----~---~vr~~~~~~l~~l~~~~ 252 (902)
...+....+|..+++.+..+....++.+...+ ..++..++.... +.+ + .....|++.+..+...+
T Consensus 1180 s~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~ 1259 (1514)
T KOG0929|consen 1180 SKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF 1259 (1514)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456789999999999998876666555443 333344444332 111 1 23445666777777777
Q ss_pred hhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
.+.+...++.++..+..+...++..+......++..++..
T Consensus 1260 ~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1260 FKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 7777777888888888888888888887777777776654
No 286
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=82.60 E-value=68 Score=33.68 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=83.0
Q ss_pred hhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh----hhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHH
Q 002596 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (902)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (902)
+..++.....++++...+-+..|..=...+..+.+.|.+.+. ..+..++..+.-++++++..|...++.++..+.+
T Consensus 115 ~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 115 LEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 344444455566654434489999999999999998876553 4567788999999999999999999999999988
Q ss_pred HHhhh---hcCCcchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Q 002596 463 FIVQD---IGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEE 508 (902)
Q Consensus 463 ~~~~~---~~~~~~~~~~~~il~~l~~~l~d~~-~~v~~~a~~al~~l~~ 508 (902)
.+... ....-...|+..++..++..+.|+. +..=..-+..|..+..
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 77641 0011234566677778888888764 2222233344555543
No 287
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=82.23 E-value=19 Score=33.64 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHhhchhccccC--CCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHH
Q 002596 145 INHMEGAMDALSKICEDIPQVLDSD--VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (902)
Q Consensus 145 ~~~r~~al~~L~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 222 (902)
...+.-++.++..+.+..+..+... .+.+..-.-..+.+.+++.+.++++.+-..+++++..+.......+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899988888887766531 01111112356677778888777788999999999998877666677777777
Q ss_pred HHHHHH-hhCCC--CHHHHHHHHHHHHHHHh
Q 002596 223 LQGLFL-LSNDP--SAEVRKLVCAAFNLLIE 250 (902)
Q Consensus 223 l~~l~~-~~~~~--~~~vr~~~~~~l~~l~~ 250 (902)
++.++. .+..+ ....|..+++++..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777776 44433 24677778999988885
No 288
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=82.19 E-value=6.1 Score=33.13 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=50.4
Q ss_pred HHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHh-hHHhHHHHHHHHHHhcCCC
Q 002596 655 IESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVH-LQARLSDFLDIAAKQLNTP 716 (902)
Q Consensus 655 ~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~ 716 (902)
+.++++. ++..+...+.+=.++||..|+.+++-+.+++|+. +..+..++++.+...+...
T Consensus 5 l~p~~~~--l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPL--LMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHH--HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4455553 7777778888889999999999999999999988 7778889999999888765
No 289
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.93 E-value=75 Score=33.76 Aligned_cols=199 Identities=15% Similarity=0.067 Sum_probs=101.5
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh----hcC
Q 002596 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ----LGG 125 (902)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~----~~~ 125 (902)
...+..++.. +.++.....+.-.|-..+... +.+.-+.+-+.+.+++++....+|+.....++.++. ...
T Consensus 24 ~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 24 VQGLSPLLSK--ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 3445555543 455655555554443333332 233334455666789999888899999999999887 222
Q ss_pred cCchHHHHHHHHHHh----ccCChhhh----hHHHHHHHHHHhhchhccccC--CCC--CCC-cchhhhHHHHHHHhcCC
Q 002596 126 IAGWLELLQALVTCL----DSNDINHM----EGAMDALSKICEDIPQVLDSD--VPG--LAE-CPINIFLPRLLQFFQSP 192 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l----~~~~~~~r----~~al~~L~~l~~~~~~~~~~~--~~~--~~~-~~~~~l~~~l~~~l~~~ 192 (902)
......+++.|.+.+ .++.+... .++...+. +........... ... ..+ ..---+-+++++-+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 233444555555544 45433222 23333332 100000000000 000 000 00001224444443 2
Q ss_pred CHHHHHHHHHHHHHHhcccchhhHHh-HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHhhChhhhh
Q 002596 193 HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLE 257 (902)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~ 257 (902)
+.+.....++++..+....+...... ...+-+.++.++.++ ..++|+.++..+..+....|..+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~ 242 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLS 242 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHH
Confidence 34444556666666655444333222 244555666655555 789999999999999988887643
No 290
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.82 E-value=34 Score=30.75 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHHHHHhcCCCCCccchh--HhhhHHHHHHHHHHh
Q 002596 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVS--VANNACWAIGELAVK 738 (902)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~--v~~~a~~alg~l~~~ 738 (902)
.....|.+.+++.++.+...|+.++..++++||..|...+ ..++..+.+.+.+... ... ||+.+...+...+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~--~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT--DPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT--HHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC--CchhHHHHHHHHHHHHHHHH
Confidence 3667788888899999999999999999999998886554 3677777776655432 223 898888888887776
Q ss_pred hh
Q 002596 739 AR 740 (902)
Q Consensus 739 ~~ 740 (902)
.+
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 63
No 291
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.73 E-value=2.3 Score=28.70 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=22.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHH
Q 002596 179 NIFLPRLLQFFQSPHTSLRKLSLGSV 204 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l 204 (902)
+.+...+...+.|+++.||.+|+..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888899999999999999998763
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.64 E-value=16 Score=32.69 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=71.2
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhh
Q 002596 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (902)
Q Consensus 101 ~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (902)
.+.+++...--.++..|. .. +..=.+.+..|..-++++++.+...|+.+|..+++.++..+..++. -..
T Consensus 13 ~l~~~dw~~ileicD~In----~~-~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------s~~ 81 (139)
T cd03567 13 SNREEDWEAIQAFCEQIN----KE-PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVG------KFR 81 (139)
T ss_pred cCCCCCHHHHHHHHHHHH----cC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH------hHH
Confidence 344555555444444442 22 2233567888889999999999999999999999999987654322 256
Q ss_pred hHHHHHHHhcC------CCHHHHHHHHHHHHHHhcccc
Q 002596 181 FLPRLLQFFQS------PHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 181 l~~~l~~~l~~------~~~~vr~~al~~l~~~~~~~~ 212 (902)
++..+...+.. ++..|+...+..+..+....+
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66777777753 578999999999999876543
No 293
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.59 E-value=4.8 Score=33.75 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=51.0
Q ss_pred hhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhh-HHhhhhhhHHHHHhhccC
Q 002596 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHEN-LKEFLPRLVPVLLSNMIY 316 (902)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~l~~l~~~ll~~l~~ 316 (902)
++.+.||++.++.++...+.+-.+++|..++.|+.-+.+. .+.. +..+..++++..+..+..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~--~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEH--APDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH--CChHhHhhhHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999999887 4444 666777777777666653
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.57 E-value=32 Score=30.59 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=59.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh
Q 002596 663 NLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKAR 740 (902)
Q Consensus 663 ~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~ 740 (902)
..+..|...+++.++.+...|+.++..++++||..|...+ ..++..+.+.+.+... ...|+..+...+...+...+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHHHHc
Confidence 3667778888899999999999999999999998886544 3688888888777643 23488888888888776654
No 295
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.09 E-value=53 Score=38.40 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=70.3
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH-HHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhh
Q 002596 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFL 256 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~ 256 (902)
+.++..+-..+..+ .-|..++..|+.++..-|..+....+ .++..|+.++ .|.+..+-..++.+|..++-..|..+
T Consensus 69 K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 56777777777754 67899999999999887765554433 3455566544 47788888999999999999999999
Q ss_pred hhhHHHHHHHHHhhh
Q 002596 257 EPHLRNLFEYMLQVN 271 (902)
Q Consensus 257 ~~~l~~i~~~~~~~~ 271 (902)
.+|++.++......+
T Consensus 147 ~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLL 161 (668)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999998776653
No 296
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=80.63 E-value=26 Score=34.19 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=90.3
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc-CChhhhhHH-HHHHHHHHhhchhccccCCCCC
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGA-MDALSKICEDIPQVLDSDVPGL 173 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~-~~~~~r~~a-l~~L~~l~~~~~~~~~~~~~~~ 173 (902)
..+.....++....|..++.++........ ++.++.+...+.. +++.+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLT----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhh----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----------
Confidence 344455667777777766655554332211 2345666666654 355555544 44444443321
Q ss_pred CCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh
Q 002596 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (902)
Q Consensus 174 ~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 253 (902)
+...+.+.+.+.+++.-+|..++.++..+... ..++.++..+-..+.|++.-+++++.-+|..+....|
T Consensus 119 -----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 -----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp -----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred -----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 45678889999999999999998877655543 3345556666667788888999999999999988888
Q ss_pred hhhhhhHHH
Q 002596 254 SFLEPHLRN 262 (902)
Q Consensus 254 ~~~~~~l~~ 262 (902)
+...+++..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877666554
No 297
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=80.63 E-value=82 Score=33.38 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcC
Q 002596 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (902)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~ 273 (902)
.++....+.+|..++.+...--...-+.++..+...+.+ ...+.++.+|.-.+-..|+.+...++.++..+-+...
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t- 286 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST- 286 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-
Confidence 467777788888877653211111223455666555543 2346677777777777899888888888877755543
Q ss_pred CCHHHHHHHHHHHHHhhccC-Cch-hhHHhhhhhhHHHHHhhcc
Q 002596 274 TDDDVALEACEFWHSYFEAQ-LPH-ENLKEFLPRLVPVLLSNMI 315 (902)
Q Consensus 274 ~~~~v~~~al~~l~~l~~~~-~~~-~~~~~~l~~l~~~ll~~l~ 315 (902)
...++...+||+..++..+ ... +.....+..++..+++++.
T Consensus 287 -t~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 287 -TPNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred -chhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 3346778899999998875 322 2223344555666655544
No 298
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.27 E-value=41 Score=32.25 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchH
Q 002596 639 CCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPV 696 (902)
Q Consensus 639 ~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 696 (902)
.++.+++.+.+.+|....+++.. ++..+...-.+++...|+.+-.++|..++.+|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~--~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKP--ILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHH--HHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 46777888889999887777664 666666666777788888888999999988884
No 299
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=80.23 E-value=48 Score=30.47 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH-hhchHhhHHhHHHHHHHHHHhcCCCC
Q 002596 681 QSAFALLGDLA-RVCPVHLQARLSDFLDIAAKQLNTPK 717 (902)
Q Consensus 681 ~~a~~~l~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~ 717 (902)
+.|+.++.++. ...++-+.|++..++|.+.+.|.++.
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCch
Confidence 55888888888 66777889999999999999999874
No 300
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.82 E-value=6.8 Score=35.24 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=70.7
Q ss_pred hcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhH
Q 002596 103 GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (902)
Q Consensus 103 ~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 182 (902)
.+++...-..++..+. .. +..=.+.+..|..-+.++++.+...|+.+|..+++.++..+..++. -..++
T Consensus 18 ~~~dw~~ileicD~In----~~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~fl 86 (142)
T cd03569 18 GEPDLASILEICDMIR----SK-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA------SREFM 86 (142)
T ss_pred CccCHHHHHHHHHHHh----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHH
Confidence 3455554444444433 11 2233578888899999999999999999999999999886654332 26677
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcccc
Q 002596 183 PRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 183 ~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~ 212 (902)
..+...+. ..++.|+..++..+..+....+
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 77777776 4688999999999999886543
No 301
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=97 Score=35.03 Aligned_cols=286 Identities=19% Similarity=0.157 Sum_probs=137.5
Q ss_pred hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002596 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (902)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (902)
..-+..+.+++-+.+ ...+-+|++.+|....+..+.. +..+-.+...+++++..+|.+++.-||-...
T Consensus 414 d~gL~qldkylys~~---~~ikaGaLLgigi~~~gv~ne~----dpalALLsdyv~~~~s~~ri~aIlGLglaya----- 481 (878)
T KOG2005|consen 414 DKGLEQLDKYLYSDE---SYIKAGALLGIGISNSGVFNEC----DPALALLSDYLQSSSSIHRIGAILGLGLAYA----- 481 (878)
T ss_pred hhhHHHHHHHhhcCC---chhhhccceeeeeecccccccc----CHHHHHHHHhccCCCceeehHHhhhhHHhhc-----
Confidence 345677888888877 7788888888887766655433 3345556666788888999999887775332
Q ss_pred hcCCcchhhHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHH-HHHhcccchHhHHHHHHHHHHHHhcc-chhhHHHHHHH
Q 002596 468 IGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATL-EEEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDA 543 (902)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~~~--v~~~a~~al~~l-~~~~~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~~~~a 543 (902)
...-++++..+...+.|.+.. |..-|.-+++.+ +..|...+ -..|++.++..-... .....+...-.
T Consensus 482 ------Gsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dv---ts~ilqtlmekse~El~d~~~RFL~LG 552 (878)
T KOG2005|consen 482 ------GSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDV---TSSILQTLMEKSETELEDQWFRFLALG 552 (878)
T ss_pred ------CCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHH---HHHHHHHHHHhhhhhhhchHHHHHHHH
Confidence 122345555666677776544 444444444432 33333332 223443333221100 01111111112
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhh
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~ 623 (902)
++.+ ..|.. +..+.+...+.. .+ ..+.+..+.+-..+...|.+=.-..+. +.+ +... .
T Consensus 553 L~ll--flgkq----e~~d~~~e~~~~----i~---~~~~~~~~~lv~~caYaGTGnvl~Iq~--q~l---l~~c----g 610 (878)
T KOG2005|consen 553 LALL--FLGKQ----ESVDAVVETIKA----IE---GPIRKHESILVKSCAYAGTGNVLKIQS--QLL---LSFC----G 610 (878)
T ss_pred HHHH--Hhccc----chHHHHHHHHHH----hh---hHHHHHHHHHHHHhhccccCceEEech--hhh---hhhc----C
Confidence 2211 12221 122222222111 10 011122333333333334321111111 000 0100 0
Q ss_pred cccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHH
Q 002596 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (902)
Q Consensus 624 ~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (902)
+.+. ..+.+.+ ..+++.-.-++|+++..-+ .+..+...+...++.+|...--++|-++...+. -
T Consensus 611 E~~~-~~e~~~~-----~avLgiAliAMgeeig~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~ 674 (878)
T KOG2005|consen 611 EHDA-DLESEQE-----LAVLGIALIAMGEEIGSEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------V 674 (878)
T ss_pred CCcc-chhhhcc-----chhhhhhhhhhhhhhhhHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------c
Confidence 0000 0000111 2223333344555443322 344455556667788888766666766655442 1
Q ss_pred HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH
Q 002596 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
.++..+.+...+. +.+|.-||+.++|-+.
T Consensus 675 ~vlDtLsk~shd~----D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 675 NVLDTLSKFSHDG----DLEVAMNAIFAMGLIG 703 (878)
T ss_pred hHHHHHHHhccCc----chHHHHHHHHHhcccc
Confidence 4677777777776 6789999999999775
No 302
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=79.71 E-value=6.8 Score=32.07 Aligned_cols=59 Identities=19% Similarity=0.044 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCC--hHHHHHHHHHHHhhHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFI 464 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~ 464 (902)
|..|+-|...++.++..+.......-+.+...+.+.+.|++ ...+..|+..|..++...
T Consensus 20 ~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 20 WALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776655566778888888888764 467888999998886543
No 303
>PF05536 Neurochondrin: Neurochondrin
Probab=79.60 E-value=1.2e+02 Score=34.61 Aligned_cols=183 Identities=14% Similarity=0.088 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhhc---CcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhcc
Q 002596 367 LRKCSAAALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l 442 (902)
.+..|...|..++..= .+.-+-.-+|.+.+.+.+.++ -..-.-++.+|..++. .+++-...+. ..++.+...+
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHH
Confidence 5677888887777621 112233456777777766551 3677788888888883 3333222221 1334444433
Q ss_pred CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc------cchH
Q 002596 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE------ELAP 516 (902)
Q Consensus 443 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~------~~~p 516 (902)
.+ ++.....|+..+..+........- ......+..+++.+-..+.......+-..|..|..|....+. .-..
T Consensus 150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~-~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 150 PN-QSFQMEIALNLLLNLLSRLGQKSW-AEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred Hh-CcchHHHHHHHHHHHHHhcchhhh-hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 33 777888888888777665432100 123445566777776666655566677889999998877631 1234
Q ss_pred hHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHhccc
Q 002596 517 RLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 517 ~l~~i~~~l~~~l~~~~~~-~~~~~~~al~~l~~~~~~~ 554 (902)
....+...+..++++.-.. .+..++...+.+.+..|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 6778888888888865443 3446677777777777653
No 304
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.51 E-value=34 Score=34.59 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcc
Q 002596 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (902)
Q Consensus 394 l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 473 (902)
+..++.+.+ +.+|.+|+.-+-.+..+....+..+-...++.+.+.+++..+ -.-|..++.+++..-. ..
T Consensus 8 lv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~------l~ 76 (353)
T KOG2973|consen 8 LVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE------LR 76 (353)
T ss_pred HHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH------HH
Confidence 455667777 899999997776665543334445556678888889988877 4456677777776432 12
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
...+..++..++..+.|+....-...|.++.++.+
T Consensus 77 ~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33444466666677777766666677777777765
No 305
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=79.17 E-value=96 Score=33.29 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=125.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHH---------HhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHH
Q 002596 23 QQISPSSTADKSQIWQQLQQYSQFPDFNNYLAF---------ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (902)
Q Consensus 23 ~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~---------il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~ 93 (902)
..++++.+ +|..|...+..+-.++++...+.. -|.. .+....-|-.|.-+.|..+..+-. ..+.-..
T Consensus 33 ~lL~~~~~-vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~--~~~~~~~ 108 (371)
T PF14664_consen 33 MLLSDSKE-VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKG--PKEIPRG 108 (371)
T ss_pred HHCCCcHH-HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCC--cccCCHH
Confidence 46677777 998888887766555544332222 2222 234567799999888887765211 1112234
Q ss_pred HHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCc-CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhc--cccCC
Q 002596 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDSDV 170 (902)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~-~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~--~~~~~ 170 (902)
+...++....++++..|..+-.++..++-..|. -.+.+-+..|.+.+.++....-+..+.++-.+...-... +..+
T Consensus 109 vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~- 187 (371)
T PF14664_consen 109 VVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG- 187 (371)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC-
Confidence 556667777788999999998888888877632 112233455555555544445556666666666543221 1111
Q ss_pred CCCCCcchhhhHHHHHHHh---cCCCH--HHHHHHHHHHHHHhcccchhhH---HhHHHHHHHHHHhhCCCCHHHHHHHH
Q 002596 171 PGLAECPINIFLPRLLQFF---QSPHT--SLRKLSLGSVNQFIMLMPSALF---VSMDQYLQGLFLLSNDPSAEVRKLVC 242 (902)
Q Consensus 171 ~~~~~~~~~~l~~~l~~~l---~~~~~--~vr~~al~~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~vr~~~~ 242 (902)
..++.++..+...- ..++. +.-..+..++..+....+.-+. +.+ .-++.+...+.-++.++|+.++
T Consensus 188 -----~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 188 -----FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred -----ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHH
Confidence 12344444333331 11122 2344555666666655443211 111 2355666666778888999999
Q ss_pred HHHHHHHhhCh
Q 002596 243 AAFNLLIEVRP 253 (902)
Q Consensus 243 ~~l~~l~~~~~ 253 (902)
..|..+....+
T Consensus 262 dll~dllrik~ 272 (371)
T PF14664_consen 262 DLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHCCCC
Confidence 99988876544
No 306
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=78.84 E-value=11 Score=30.41 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=51.0
Q ss_pred hhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002596 179 NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (902)
Q Consensus 179 ~~l~~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~ 246 (902)
..++..+...+. .++.++|...+.|+..++....+.+..-.+.++..+-....+.++.+...+++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 556666666654 46899999999999999987666665556666777777777777888888887764
No 307
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=78.65 E-value=71 Score=33.76 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHH
Q 002596 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ 187 (902)
Q Consensus 108 ~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (902)
..+.....++..|... =+..+...+++..+.....+++.|..++..-+.....++-+.| ..-...+|.++.
T Consensus 41 ~~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~f-d~~~~~l~kll~ 111 (330)
T PF11707_consen 41 SFQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSF-DFSLKSLPKLLT 111 (330)
T ss_pred hHHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhc-CCchhhHHHHhc
Confidence 3555555555555432 1778888898888878889999999998833221111110000 001122333332
Q ss_pred HhcC--CC--------HHHHHHHHHHHHHHhcccchhhHHhH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChh
Q 002596 188 FFQS--PH--------TSLRKLSLGSVNQFIMLMPSALFVSM---DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (902)
Q Consensus 188 ~l~~--~~--------~~vr~~al~~l~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 254 (902)
-=.. .. +.+|...++.+..++...+......+ ..++..++..+..++.++-..++++|..-+-..+
T Consensus 112 ~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~- 190 (330)
T PF11707_consen 112 PRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS- 190 (330)
T ss_pred cccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-
Confidence 1110 11 38999999999999987765444322 1347777776766667777777777765332222
Q ss_pred hhhhhH------HHHHHHHHhhhcCCCH----HHHHHHHHHHHHhhcc
Q 002596 255 FLEPHL------RNLFEYMLQVNKDTDD----DVALEACEFWHSYFEA 292 (902)
Q Consensus 255 ~~~~~l------~~i~~~~~~~~~~~~~----~v~~~al~~l~~l~~~ 292 (902)
.+.... +..+..+.......++ .++..+-+|+..+|..
T Consensus 191 ~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 191 SVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 111111 1222333333333333 6777778888777755
No 308
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=78.49 E-value=42 Score=31.25 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHhcccchhhH---------HhH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHH
Q 002596 193 HTSLRKLSLGSVNQFIMLMPSALF---------VSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (902)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~---------~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 262 (902)
+...|..+++.+..+++..+..+. ..+ +.+.+.+.+....++..+-..+++++..+.......++..++.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888876655444 111 2345666665555668888899999999998888888888887
Q ss_pred HHHHHHh-hhcCC--CHHHHHHHHHHHHHhhcc
Q 002596 263 LFEYMLQ-VNKDT--DDDVALEACEFWHSYFEA 292 (902)
Q Consensus 263 i~~~~~~-~~~~~--~~~v~~~al~~l~~l~~~ 292 (902)
++..++. .+... ...-+..+++++..+++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 7777766 44332 235677889999988875
No 309
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.94 E-value=41 Score=29.15 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHH---HHHHHHhhC--C------CCHHHHHHHHHHHH
Q 002596 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY---LQGLFLLSN--D------PSAEVRKLVCAAFN 246 (902)
Q Consensus 178 ~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~--~------~~~~vr~~~~~~l~ 246 (902)
...++..|..-|++.++.|+..++++|..++...++.+...+..- +..+.+.-. | ....||..|-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 467888899999999999999999999999988887776655433 333333222 1 23468888888877
Q ss_pred HHHh
Q 002596 247 LLIE 250 (902)
Q Consensus 247 ~l~~ 250 (902)
.+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 6653
No 310
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.87 E-value=1.7e+02 Score=35.52 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHH-hhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH-HHHHHHHHH
Q 002596 409 REAAVLALGAIAEGCIKGLYPHLSEIVAFL-IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLK 486 (902)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l-~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~~ 486 (902)
|...+...........+.+..++..++..+ +....|-.|.+|..++..||-....+++. ++ ...+..+-=
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~--------Fl~dsYLKYiGW 333 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEI--------FLSDSYLKYIGW 333 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHH--------HhcchHHHHhcc
Confidence 567777766666666666667777777754 45678999999999887777655544432 22 234455555
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHH
Q 002596 487 RILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAF 529 (902)
Q Consensus 487 ~l~d~~~~v~~~a~~al~~l~~~~--~~~~~p~l~~i~~~l~~~l 529 (902)
.|+|.+..||..+..+|..+.+.- ...+.-|...+=.+++...
T Consensus 334 tLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 334 TLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred eeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998872 2233334444444444444
No 311
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.85 E-value=6.3 Score=36.27 Aligned_cols=131 Identities=15% Similarity=0.042 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccC
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLD 443 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~ 443 (902)
++|..+.-++.++....++..-..+-.++...+.+++ ....-.++.++..+..+.++-....+ +.+++.+.+...
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 3899999999888766666666777777877777655 55677777888888777765433222 234555665555
Q ss_pred --CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhc-CCCHH-HHHHHHHHHHH
Q 002596 444 --DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (902)
Q Consensus 444 --d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~-v~~~a~~al~~ 505 (902)
..+..+..+++.+++.-+..-. .........++.|-+..+ +++.. +|..|+-.|..
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~------~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKS------CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHH------HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHccHH------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6778888888888876543211 012223444555555564 44455 77777766653
No 312
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=77.17 E-value=89 Score=31.84 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=44.9
Q ss_pred HHHHHhhccCCCChH-HHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 434 IVAFLIPLLDDKFPL-IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 434 i~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
++..+.+.++..++. .-..||.-++++.+..++... ...+ -.+=..++..+.+++++|+-.|..|+..+..
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~--vl~K--yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA--VLSK--YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH--HHHH--hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 566666666665554 344577777877776654200 0111 1233456677888899999999999987764
No 313
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.11 E-value=17 Score=33.36 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=80.0
Q ss_pred Hhhhhh--cCChHHHHHHHHHHHHHHhhcCcCchHHH-HHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCC
Q 002596 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLEL-LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (902)
Q Consensus 98 ll~~l~--~~~~~vr~~~a~~l~~i~~~~~~~~w~~l-l~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~ 174 (902)
++..|. ...+.+|..+.-+++.+.... +..+.+. -.++...+..++.+....++.++..+....++.-..-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 444444 347789999988888886332 3344443 44445555544444555677777777665544211101
Q ss_pred CcchhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHhcccc--hhhHHhHHHHHHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 002596 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSN-DPSAE-VRKLVCAAFNL 247 (902)
Q Consensus 175 ~~~~~~l~~~l~~~l~--~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~-~~~~~-vr~~~~~~l~~ 247 (902)
..+.+++.+...+. ..+..+...+++++..-...-. ..+..+ +++.|-.... +++.. +|..+.-+|..
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~---~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN---YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH---CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH---HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 11567788888888 6788999999999988653211 122233 3444444453 34444 66666655543
No 314
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=76.68 E-value=4.1 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.6
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHH
Q 002596 432 SEIVAFLIPLLDDKFPLIRSISCWT 456 (902)
Q Consensus 432 ~~i~~~l~~~l~d~~~~vr~~a~~~ 456 (902)
+.+...+...+.|+++.||.+|..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3678888899999999999999765
No 315
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.56 E-value=3.4 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhH
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~ 461 (902)
.++.+++.++++++.++..++|++++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777889999999999999875
No 316
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=76.01 E-value=1.8e+02 Score=34.66 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHh
Q 002596 674 DDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQ 712 (902)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~ 712 (902)
+.+..+|..+...+.+++.+|....---+-.++..+++.
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~r 522 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMAR 522 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhc
Confidence 456788888999999999998754433444556665554
No 317
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.92 E-value=2.2e+02 Score=35.61 Aligned_cols=263 Identities=16% Similarity=0.123 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcc---CCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~ 482 (902)
-..|...+.++-.+.+.+++.+-.--+.++..+-... ...+..+-+.+..++.-++..+-+. .....+..++.
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqS----Lp~sci~~lid 931 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQS----LPTSCILDLID 931 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhc----CChHHHHHHHH
Confidence 5677777888888888877655332333333333222 2234455556666766666655432 12334445555
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhh
Q 002596 483 GLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYL 561 (902)
Q Consensus 483 ~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 561 (902)
.+...-. ..+..+--.|...+-++.+. +.. +.....+........+-+. .++..+. ...
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDf--------l~~------km~S~sed~~~~~~~e~~~---ss~~~~~---~l~ 991 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDF--------LKN------KMFSTSEDSCAYNSVEDLY---SSMKSKE---ILP 991 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHH--------HHh------hhhccchhhhhhcchhhhc---ccccchh---hhh
Confidence 5543322 12334444444444333321 111 1111111111111112111 1222221 122
Q ss_pred hhhhHHHHHHHhcCCCCC-cch-hhHHHHHHHHHHHhcccccc--ccHHHHHHHHHHHHHHHHHhhcccccCCCCchhHH
Q 002596 562 DILMPPLIAKWQQLPNSD-KDL-FPLLECFTSIAQALGAGFTQ--FAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFV 637 (902)
Q Consensus 562 ~~ll~~l~~~l~~~~~~~-~~~-~~~l~~l~~i~~~~g~~f~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~ 637 (902)
+.+.=.++..+.+.-+++ .++ -.+..++=.+..+.|..+.+ +..-+...++..|...... ...+..+++..++.-
T Consensus 992 e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q-~~~ewngkeiqkqwt 1070 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQ-NVSEWNGKEIQKQWT 1070 (1610)
T ss_pred hHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccccc-chhhhcchhHhhhhh
Confidence 333333444444443333 233 46778888888888888877 4444444444555421100 000111122123333
Q ss_pred HHHhhhHHHHHHHHhhhHHhhhcc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 002596 638 VCCLDLLSGLAEGLGSGIESLVAQ-------SNLRDMLLQCCMDDASDVRQSAFALLGDLARV 693 (902)
Q Consensus 638 ~~al~~l~~l~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 693 (902)
+...-+++++++.+.+.+..+..- +.++.++.....+..+++.-+++..+-++...
T Consensus 1071 et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 445567888888888877655432 45778888888899999999988888776543
No 318
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=74.43 E-value=63 Score=30.95 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCCh--HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 483 (902)
-++|..|..++..+...... -.+++|. .+.+...+..++. ..-..+-+++.++..-+. ...|...++..
T Consensus 21 DrvR~~A~~~l~~ll~~~~~-~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-------~~~y~~~ll~G 91 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDP-TIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLD-------LPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCc-cccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhc-------cHHHHHHHHhH
Confidence 57899999999988843211 1112221 1222222222211 111223444444443332 56788889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHH
Q 002596 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLAD 549 (902)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~--~~~~~~~~al~~l~~ 549 (902)
++......+..+...+..+|..++... ..-...+..++..++..++++.. ++..-+++++..+..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~ 158 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS 158 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh
Confidence 998888878888888888888888754 22223456677777777765432 222234555554443
No 319
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.61 E-value=1.1e+02 Score=31.17 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=61.3
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCch----HHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCC
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w----~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~ 171 (902)
..+...+.++++.||+.+...+..+... +...| -..++.+.+++.+.++ -+-|..+|..+..+..-.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~------ 76 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR------ 76 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH------
Confidence 4566778889999999887665555443 33334 4678889999988776 334666776666643211
Q ss_pred CCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002596 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (902)
Q Consensus 172 ~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (902)
+..+..++..++..+.++....-...+..+.++..
T Consensus 77 ---~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 ---KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred ---HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 12233455556666666644444444445555443
No 320
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=73.28 E-value=1.5e+02 Score=38.12 Aligned_cols=133 Identities=19% Similarity=0.313 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCCHhHHH--------HHH---HHHhh----hhhcCChHHHHHHHHHHHHHHhhcCcCc
Q 002596 64 SVEIRQAAGLLLKNNLRTAYKSMSPSNQQ--------YIK---SELLP----CLGAADRHIRSTVGTIVSVVVQLGGIAG 128 (902)
Q Consensus 64 ~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~--------~i~---~~ll~----~l~~~~~~vr~~~a~~l~~i~~~~~~~~ 128 (902)
+..-|..+-.+||+.|+..- +...... .++ ..++. .|.++++.++...+.....++.......
T Consensus 393 ~~~~~k~ie~ilkkKI~~g~--it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~ 470 (1426)
T PF14631_consen 393 NEDNRKSIEKILKKKIKSGH--ITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC 470 (1426)
T ss_dssp -HHHHHHHHHHHHHHHTTT---S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH
T ss_pred CccchHHHHHHHHHHHHhCc--ccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh
Confidence 44567788889999886532 2222111 111 11221 3457899999988888888877642223
Q ss_pred hHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCC-HHHHHHHHHHHHHH
Q 002596 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQF 207 (902)
Q Consensus 129 w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~vr~~al~~l~~~ 207 (902)
-.+++..|...+.+++.....+|+.+|..+++..+..+.. ...++..++..+.+=+ .++|.. +..|..+
T Consensus 471 qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~---------fa~~l~giLD~l~~Ls~~qiR~l-f~il~~L 540 (1426)
T PF14631_consen 471 QQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP---------FATFLKGILDYLDNLSLQQIRKL-FDILCTL 540 (1426)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH---------THHHHHGGGGGGGG--HHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH---------HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHH
Confidence 3789999988888888777789999999999876665422 1344455555555533 345543 5555555
Q ss_pred h
Q 002596 208 I 208 (902)
Q Consensus 208 ~ 208 (902)
.
T Consensus 541 a 541 (1426)
T PF14631_consen 541 A 541 (1426)
T ss_dssp H
T ss_pred h
Confidence 4
No 321
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.18 E-value=1e+02 Score=30.68 Aligned_cols=88 Identities=17% Similarity=0.342 Sum_probs=58.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc------------------------------hhhHHhHHHHHHHHHH
Q 002596 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------------------------------SALFVSMDQYLQGLFL 228 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------------------------------~~~~~~~~~~l~~l~~ 228 (902)
..+-..++..+.+.++.+|..|++.+-.++.... ..+...-..++..|+.
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~ 121 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLD 121 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 3344557777888899999999999988763211 0111122356777777
Q ss_pred hhCCC--CHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHH
Q 002596 229 LSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (902)
Q Consensus 229 ~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 266 (902)
.+.++ +...-..++.+|..++...|.++...++.+..+
T Consensus 122 ~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~ 161 (239)
T PF11935_consen 122 VLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSF 161 (239)
T ss_dssp HHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 76654 467788889999999999998766555544444
No 322
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=73.08 E-value=19 Score=31.32 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhhccC-CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 429 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
.+++.++|.+...+. ...+..|.++...+++++...+ -..+.++.++..+.+....... +..+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 467889999999998 8889999999999999998654 2444555555555554444333 456777777776
Q ss_pred HH
Q 002596 508 EE 509 (902)
Q Consensus 508 ~~ 509 (902)
+.
T Consensus 74 q~ 75 (121)
T PF12397_consen 74 QS 75 (121)
T ss_pred Hc
Confidence 54
No 323
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.03 E-value=1e+02 Score=30.59 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=99.3
Q ss_pred cCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHH
Q 002596 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (902)
Q Consensus 104 ~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (902)
..++.+....-..+..++.... ..-+-++..|..+...+....+..+++.+..+.+.-.. ..+.+-+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r------------~f~~L~~ 78 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR------------HFPFLQP 78 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch------------HHHHHHH
Confidence 4577888888888888887765 66677888888888777766666677777666653211 1122222
Q ss_pred HHHH-------HhcC--CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhCh
Q 002596 184 RLLQ-------FFQS--PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRP 253 (902)
Q Consensus 184 ~l~~-------~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~ 253 (902)
.+.. ...+ ...+.......++..++...|+ +...+++.+...+ ++.++..+..+++++..+++..-
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 2222 0111 1334445545567777766665 4445566666666 66777888889999999986544
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q 002596 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (902)
Q Consensus 254 ~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~ 291 (902)
-.+...+..+.+.+ -.+..+.+...-++++.-+..
T Consensus 155 vd~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~ 189 (234)
T PF12530_consen 155 VDFYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQ 189 (234)
T ss_pred ccHHHHHHHHHHhc---CCccchHHHHHHHHHHHHhcc
Confidence 44444444444433 223345554444555444433
No 324
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=72.42 E-value=1.7e+02 Score=32.90 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=66.3
Q ss_pred HHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHH
Q 002596 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-----LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (902)
Q Consensus 451 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-----~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l 525 (902)
..-||++|.++..+.+. ....++-.++..++... +|+...|.......++..-..+. .--.|+..++..|
T Consensus 501 NtLcWAIGSISGamsE~----~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLk-ahw~FLkTVv~KL 575 (1053)
T COG5101 501 NTLCWAIGSISGAMSEV----NEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLK-AHWSFLKTVVKKL 575 (1053)
T ss_pred hHHHHHHhcccchhhhH----HHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHH-HHHHHHHHHHHHH
Confidence 56899999998877653 34567777777776432 24333333333333333222211 1134788899999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHhcccC
Q 002596 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (902)
Q Consensus 526 ~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (902)
+..+....++++..++++.-.+++.++-+|
T Consensus 576 FEFMhE~HEGvqDMACDtFiKIvqKC~~hF 605 (1053)
T COG5101 576 FEFMHEDHEGVQDMACDTFIKIVQKCPVHF 605 (1053)
T ss_pred HHHHhhhhhhHHhhhHHHHHHHHHhCcHHH
Confidence 999999999999999999988888776554
No 325
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=71.95 E-value=7.3 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 002596 480 VLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 480 il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
.++.+++.+.+++..++..|+++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6777888888888999999999999875
No 326
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=71.20 E-value=73 Score=31.19 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=53.9
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH
Q 002596 663 NLRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 663 ~l~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
.+.|++....+++ .+..|-+++++||.+++.....+..|+ ..++|...+.++.. ....|..|.+-++.|.
T Consensus 124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G----SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG----SELSKTVATFILQKIL 196 (293)
T ss_pred hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc----cHHHHHHHHHHHHHHh
Confidence 4677777666654 466889999999999999988887776 37999998888775 4466777777777765
No 327
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=70.81 E-value=1.3e+02 Score=35.34 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=58.8
Q ss_pred hccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhccc--chhhHH
Q 002596 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--PSALFV 217 (902)
Q Consensus 140 l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~--~~~~~~ 217 (902)
+..........||.++.+++..|.+.+. .....++..+..+|.+..++++..+..++..|+... .+.+.-
T Consensus 65 l~~~r~~~v~Iamea~~kLL~~C~eq~n--------~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~ 136 (819)
T KOG1877|consen 65 LRRERFGSVKIAMEAYDKLLQACKEQIN--------LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHR 136 (819)
T ss_pred HHhccCcchhhHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhh
Confidence 3444555566788888888888877541 234677778888888889999999999999998442 223334
Q ss_pred hHHHHHHHHHHhhC
Q 002596 218 SMDQYLQGLFLLSN 231 (902)
Q Consensus 218 ~~~~~l~~l~~~~~ 231 (902)
..+.|+..+.++..
T Consensus 137 ~yd~Fi~kf~~l~h 150 (819)
T KOG1877|consen 137 NYDFFISKFSSLCH 150 (819)
T ss_pred hhHHHHHHHHHHhh
Confidence 45666777777654
No 328
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.63 E-value=2.9e+02 Score=34.83 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChH
Q 002596 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (902)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 448 (902)
...-..+-.+....+ +.+-.++|.+..-|.+++ -..|..|...+|.+.......+..-.+.++...+..+.|.++.
T Consensus 240 ~~~he~i~~L~~~~p-~ll~~vip~l~~eL~se~---~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 240 IKYHELILELWRIAP-QLLLAVIPQLEFELLSEQ---EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred hHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 334444444444443 344567888888888888 8999999999999988766666666788899999999999999
Q ss_pred HHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Q 002596 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (902)
Q Consensus 449 vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~ 528 (902)
||..+..+..++.-.-+ . ...-..++..+-....|.+.++|..+......+.+ .-..+.+.++..+...
T Consensus 316 vR~~~v~~~~~~l~~~~------~-~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~----~~l~~~~~ll~~~~eR 384 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNP------S-IAKASTILLALRERDLDEDVRVRTQVVIVACDVMK----FKLVYIPLLLKLVAER 384 (1266)
T ss_pred hhhhHHHHhHHHHhcCc------h-hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH----hhhhhhHHHHHHHHHH
Confidence 99999888766544211 1 11112222233223334444444332211111111 1122333466666666
Q ss_pred HhccchhhHHHHHHHHHHHHH
Q 002596 529 FGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 529 l~~~~~~~~~~~~~al~~l~~ 549 (902)
+.+....++..++..+..+-+
T Consensus 385 ~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 385 LRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 777777888877777766655
No 329
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=69.77 E-value=76 Score=28.51 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHH-HHHHHhc---cchhhHHHHHHHHHHHH
Q 002596 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK---YQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 476 ~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~-l~~~l~~---~~~~~~~~~~~al~~l~ 548 (902)
.-...+..+.+.+. .++++|+..|...+..++++||..+...+ ..+++. |.+.+.. ....++..+++.+...+
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 34578888888887 46899999999999999999987764322 345554 5666652 22356667777777777
Q ss_pred HHhcc
Q 002596 549 DAVGF 553 (902)
Q Consensus 549 ~~~~~ 553 (902)
...+.
T Consensus 115 ~~f~~ 119 (141)
T cd03565 115 DAFRG 119 (141)
T ss_pred HHhCC
Confidence 76654
No 330
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=69.54 E-value=11 Score=29.19 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhcc-CCCChHHHHHHHHHHHhhHHHH
Q 002596 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLL-DDKFPLIRSISCWTLSRFSKFI 464 (902)
Q Consensus 408 ~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 464 (902)
.+++|++++|.++..... .++++ ++++.+++.. +++...+|..|+.++|-++...
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 478999999999864321 23333 4777777765 4788899999999999998743
No 331
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.53 E-value=49 Score=28.43 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=55.2
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHH----h--cCCCHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----l--~~~~~~vr~~ 199 (902)
+....+.+..|..-+.+.++.+..-|+.+|-.+++.+++.+..++.. ..++..++.+ . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~------~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS------NDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH------hHHHHHHHHhhccccccCCCChHHHHH
Confidence 56778999999999999999999999999999999998866433211 2222333322 1 1247789999
Q ss_pred HHHHHHHHh
Q 002596 200 SLGSVNQFI 208 (902)
Q Consensus 200 al~~l~~~~ 208 (902)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 888877653
No 332
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=69.46 E-value=39 Score=32.45 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=48.0
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHh
Q 002596 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
+.+.....+++. |..|.+....+.-+.. ....+.++..+-..+.|++..||.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 677788888773 6655554444333322 34567788888888899999999999999999987644
No 333
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=68.85 E-value=1.6e+02 Score=31.09 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHH
Q 002596 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (902)
Q Consensus 107 ~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 186 (902)
..-++.+++.|...+++. |.--.+-+..-+.++.+++..+|..|+.-|-.+|.+ + .+..+.+.+.
T Consensus 38 ~k~k~lasq~ip~~fk~f-p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d------------~~~rv~d~l~ 102 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHF-PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--D------------ALSRVNDVLV 102 (460)
T ss_pred hHHHHHHHHHHHHHHhhC-chhhhHHHHhhhccccccchhhHHHHHhccchhccC--c------------hhhhhHHHHH
Confidence 344556777777777653 333344556666677777778888887777666664 1 2244455555
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHhhChhhhhhhHH-HHH
Q 002596 187 QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL-LIEVRPSFLEPHLR-NLF 264 (902)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~-l~~~~~~~~~~~l~-~i~ 264 (902)
++|+ .+. +..||.-..-.+.++|..+...+.. +....++.+..-+. .++
T Consensus 103 qLLn-------k~s----------------------l~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv 153 (460)
T KOG2213|consen 103 QLLN-------KAS----------------------LTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIV 153 (460)
T ss_pred HHHH-------HHH----------------------HHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHH
Confidence 5554 111 2222222222356677777666533 44444444433332 344
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHh
Q 002596 265 EYMLQVNKDTDDDVALEACEFWHSY 289 (902)
Q Consensus 265 ~~~~~~~~~~~~~v~~~al~~l~~l 289 (902)
+.+...+.|-+.+--...+.++..+
T Consensus 154 ~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 154 DEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Confidence 5555556665544333334555444
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=68.76 E-value=1.1e+02 Score=29.23 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccch
Q 002596 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (902)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~ 515 (902)
+.+..-..|+++.+|++++.++..+... ..+.+.++..+-..+.|++..||.+..++|..+....++.+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 5667777899999999998777655432 245677787777778888999999999999988877555555
Q ss_pred HhHHHH
Q 002596 516 PRLEII 521 (902)
Q Consensus 516 p~l~~i 521 (902)
+|+...
T Consensus 178 ~~l~~~ 183 (197)
T cd06561 178 AFLEKN 183 (197)
T ss_pred HHHHHH
Confidence 554443
No 335
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=68.39 E-value=1.1e+02 Score=29.19 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=85.4
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHH
Q 002596 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFATLEE 508 (902)
Q Consensus 431 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~--v~~~a~~al~~l~~ 508 (902)
+.+++..+++.....-.+||..|..++.++...-.... + ..++. +.+...+..++.. .-..+..++..++.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~-~ip~~----~~L~~i~~~~~~~~~~w~~~~~~F~~l~~ 77 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--P-HIPHR----EELQDIFPSESEASLNWSSSSEYFPRLVK 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--c-CCCcH----HHHHHHcccccccccccCCHHHHHHHHHH
Confidence 34455555555555556899999999998873221100 0 11122 2222222211110 01123333444442
Q ss_pred HhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHH
Q 002596 509 EAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLEC 588 (902)
Q Consensus 509 ~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~ 588 (902)
-. .+..|-..++..++--.....+...+.+..++-......... +.....++..++..+++...+++...+++++
T Consensus 78 LL--~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~---~~~~~~v~~~l~~il~~~~~~dRv~vP~l~t 152 (193)
T PF12612_consen 78 LL--DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDS---PEELEQVLSDLLSILKENLRNDRVVVPLLKT 152 (193)
T ss_pred Hh--ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhCCCCCeeecHHHH
Confidence 21 123577778888877777766666666666666665533221 2567788888888888766666766788887
Q ss_pred HHHHHHH
Q 002596 589 FTSIAQA 595 (902)
Q Consensus 589 l~~i~~~ 595 (902)
+..+...
T Consensus 153 l~~Ll~~ 159 (193)
T PF12612_consen 153 LDFLLSS 159 (193)
T ss_pred HHHHHhC
Confidence 7776553
No 336
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=67.80 E-value=1.1e+02 Score=30.56 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=47.0
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhchHhhHHhHH--HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH
Q 002596 663 NLRDMLLQCCMDDA-SDVRQSAFALLGDLARVCPVHLQARLS--DFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 663 ~l~~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
.+.|++....+.+. +.+|-++++++|.+++.....+..|+- +++|...+.++.. +.-.|..|.+-+..+.
T Consensus 95 yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G----selSKtvAtfIlqKIL 167 (262)
T PF04078_consen 95 YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG----SELSKTVATFILQKIL 167 (262)
T ss_dssp GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-----HHHHHHHHHHHHHHH
T ss_pred hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc----cHHHHHHHHHHHHHHH
Confidence 46788766555533 568899999999999988777777774 7888888887665 3455666666666654
No 337
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=67.07 E-value=2.3e+02 Score=32.23 Aligned_cols=85 Identities=11% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcch-hhhh-hhHHHHHHHHhhccCCCChHHHHHHHH
Q 002596 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLSEIVAFLIPLLDDKFPLIRSISCW 455 (902)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~-~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~ 455 (902)
+...+.++.+..++-.+...+.++.+ -..|-+.+..++.+++-.. +... +..+.+....-..|.|.++.++..|+.
T Consensus 468 ~~~~l~~~~i~qv~~~l~~l~~~~pp--~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALe 545 (559)
T PF14868_consen 468 FIQLLDPQLIEQVLTELTSLFKSEPP--DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALE 545 (559)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhCCC--ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333445555666666677754331 4477777777877776432 2222 344555444445678999999999999
Q ss_pred HHHhhHHHH
Q 002596 456 TLSRFSKFI 464 (902)
Q Consensus 456 ~l~~~~~~~ 464 (902)
++|+|++..
T Consensus 546 AF~~FAe~T 554 (559)
T PF14868_consen 546 AFGQFAERT 554 (559)
T ss_pred HHHHHhccC
Confidence 999999853
No 338
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=66.76 E-value=37 Score=29.52 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=52.2
Q ss_pred chhhhhHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHH
Q 002596 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (902)
Q Consensus 385 ~~~~~l~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 462 (902)
.+++.++|.+...+. +.. ...|-++++.++.++...+= -.+.+..++..+.+....... ...+.-++..+..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 467889999999999 555 88999999999999986541 134556666667766655544 4567777777764
No 339
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.18 E-value=3.7e+02 Score=34.25 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCC
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~ 556 (902)
+.++...++..-.|.+.+.|-.|...+..+.+..++...+.+++++|.|..++.+.+..+-..+-..+..+-...|+.+.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 67777777777788889999999999999999999999999999999999999988777766666666666666776543
No 340
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=66.11 E-value=1.9e+02 Score=30.79 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 476 ~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
....++..+...+. +.|.........+|..-+...+..+. +.++..+.+.+++.+..+++.-+.+++......+..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 34556666666665 56777788888888777666633333 467777788888877777777777777666511111
Q ss_pred CCchhhhhhhhHHHHHHHhcC
Q 002596 555 LNQPVYLDILMPPLIAKWQQL 575 (902)
Q Consensus 555 ~~~~~~~~~ll~~l~~~l~~~ 575 (902)
. ...+...++|.+.+.+++.
T Consensus 96 ~-~~~~~~~~~~~L~~~~~~~ 115 (339)
T PF12074_consen 96 D-SLKFAEPFLPKLLQSLKEA 115 (339)
T ss_pred h-HHHHHHHHHHHHHHHHHHH
Confidence 1 1267778888888877654
No 341
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.84 E-value=8.5 Score=22.94 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHH
Q 002596 449 IRSISCWTLSRFSK 462 (902)
Q Consensus 449 vr~~a~~~l~~~~~ 462 (902)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 79999999999875
No 342
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=64.46 E-value=2e+02 Score=30.59 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 002596 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMM 527 (902)
Q Consensus 448 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~ 527 (902)
.+......+|..+..+-..+ .+..-++++..+..++.+. ....|..+|.-.+-+.+..+.++++.|+..+.+
T Consensus 212 D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 212 DLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 55666677777776655432 2344568888888888763 345577777777777788899999999888876
Q ss_pred HHhccchhhHHHHHHHHHHHHH
Q 002596 528 AFGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 528 ~l~~~~~~~~~~~~~al~~l~~ 549 (902)
...... .---+++-+..++.
T Consensus 284 i~tt~~--~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 284 ISTTPN--MAIHILEFLSSLSR 303 (356)
T ss_pred hccchh--hHHHHHHHHHHHhh
Confidence 655332 11134555555543
No 343
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=64.34 E-value=74 Score=27.29 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=51.5
Q ss_pred chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHH--HHHHHhh----cc--CCCChHHHHHHHHH
Q 002596 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (902)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~ 456 (902)
.....++..+.+.+.+.+ |++..-|+..|-.+...|++.+...+.. .+..+++ .. .+.+..||..+..+
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678888999999887 9999999999999999998766543322 1112221 11 24578899888777
Q ss_pred HHhh
Q 002596 457 LSRF 460 (902)
Q Consensus 457 l~~~ 460 (902)
+...
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 6543
No 344
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=64.13 E-value=3.8e+02 Score=33.73 Aligned_cols=373 Identities=16% Similarity=0.153 Sum_probs=177.9
Q ss_pred hhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCC-HHHHH-HHHHHHHHH
Q 002596 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQE-AACSAFATL 506 (902)
Q Consensus 429 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~-~~v~~-~a~~al~~l 506 (902)
.+++.++-.+...+.+....+|.++-.++++++..+. ..|+..|++.+-..+.-.- ..|.. ..-.+++.+
T Consensus 560 ~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg--------~~yl~~Vi~el~~Tl~rg~q~hvl~~tvh~ll~a~ 631 (1364)
T KOG1823|consen 560 RNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILG--------PKYLYFVIKELQTTLKRGFQVHVLSYTVHYLLGAM 631 (1364)
T ss_pred hcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3688888889999999999999999999999999874 4667777777765554211 11111 111222222
Q ss_pred HHHh-----cccchHhHHHHHHHHHHHHhccch----hhHH----HHHHHHHHHHHHhcccCCchhhhhhhhHHHHHHHh
Q 002596 507 EEEA-----AEELAPRLEIILQHLMMAFGKYQR----RNLR----IVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (902)
Q Consensus 507 ~~~~-----~~~~~p~l~~i~~~l~~~l~~~~~----~~~~----~~~~al~~l~~~~~~~~~~~~~~~~ll~~l~~~l~ 573 (902)
.... ...+.+.+.-.+..+.......+. ...+ ..+++-..+++.++.. -+..++.++.+.++
T Consensus 632 ~~v~~~g~Ld~~~~~~i~i~~e~~fg~v~~ek~~~~~~~kEakgnks~d~yeil~~ivs~~-----~v~~ll~p~k~il~ 706 (1364)
T KOG1823|consen 632 KNVLKAGSLDTCLDPIIKIFNENLFGEVGKEKDSKEYESKEAKGNKSYDSYEILARIVSFD-----EVPTLLRPLKNILK 706 (1364)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhchhhcCCCchhHHHHHHHHhchh-----hhhHHHHHHHHHHh
Confidence 2211 223344444444444444433221 1111 1233333344433322 22345555666665
Q ss_pred cCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH-hhccccc-CCCCchh-----------HHHHH
Q 002596 574 QLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA-KVDSVAA-GAQYDKE-----------FVVCC 640 (902)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~-~~~~~~~-~~e~d~~-----------~~~~a 640 (902)
... ..+...++=+|+..++..+..+=..-...++..+.+..+..... ..++.+. -+.+|.. .+...
T Consensus 707 ~~~-~lk~~rkv~ellrr~~~gl~~n~~s~~~s~l~lc~~l~s~~~~~ie~~~k~~~k~~~d~~~~p~fl~~t~~~~~~~ 785 (1364)
T KOG1823|consen 707 ETD-SLKSQRKVDELLRRLLLGLNDNKSSLSSSILTLCYQLKSENYQLIEVETKTAVKDQFDLGLRPFFLPNTPKLALFF 785 (1364)
T ss_pred ccc-chhhhhhHHHHHHHHHhHhccCchhhHHHHHHHHHHHhccccccchhhhhccccccccccCCcccccccHHHHHHH
Confidence 432 22233456667777766554432223344445454444332210 0000000 0000111 11122
Q ss_pred hhhHHHHHHHHh-hhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCc
Q 002596 641 LDLLSGLAEGLG-SGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK 719 (902)
Q Consensus 641 l~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 719 (902)
++++.+--...+ ......+. .+++++..|+......|..+++..+-.+.+.--+....-..-+...-......+ ..
T Consensus 786 ~~ll~~k~~~~~~~~~~~~l~--~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~~~~~~~gs-~~ 862 (1364)
T KOG1823|consen 786 LDLLRGKKTKSSDDSTVSQLV--PFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLLARKRHSGS-PS 862 (1364)
T ss_pred HHHHhcccccCccHhHHHHHH--hHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcCC-Cc
Confidence 222222211111 11222222 277888888888888888888888888776432222111110111111111111 11
Q ss_pred cchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhcCCccCcChHHHHHHHH
Q 002596 720 ETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 799 (902)
Q Consensus 720 ~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~ 799 (902)
-+....++..|++..++...+... .-+..++-+........ .+.-|+..+-.+-+-+-.-+ ...|.+..++...-
T Consensus 863 ~~~el~q~~~k~~t~lI~~~~s~~--i~e~~ls~ll~~~~sD~--~d~~rq~~~F~l~kAl~~r~-i~~~eL~~imd~v~ 937 (1364)
T KOG1823|consen 863 TNFELCQDSFKGFTALIAQVGSVK--IKEDVLSYLLARVESDI--SDPSRQGLAFSLLKALVSRK-IMLPELYEIMDKVR 937 (1364)
T ss_pred ccHHHHHHHHHHHHHHHHHhccee--eeHHHHHHHHHHhcccc--ccchhHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 156788899998888887766422 12333444444444332 23444444333332222221 22344667777766
Q ss_pred HhccCCCCcHHHHHHHHHHHHHHH
Q 002596 800 IALSMIRDDTEKEDAFRGLCAMVK 823 (902)
Q Consensus 800 ~~l~~~~d~~e~~~~~~~l~~li~ 823 (902)
..+-...-.+-+..+.+.+..-+-
T Consensus 938 e~~v~~~~~~~r~qcre~~~~~~~ 961 (1364)
T KOG1823|consen 938 ETMVRNHSKEIRLQCREVFYSFLG 961 (1364)
T ss_pred HHHHhcccchHHHHHHHHHHHHHh
Confidence 666554444555555555554443
No 345
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=63.52 E-value=3.4e+02 Score=32.94 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=81.1
Q ss_pred hhhhHHHHHHHHHHhhchhc---cccCCCCCCCcchhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHhcccc--hhhHHhH
Q 002596 146 NHMEGAMDALSKICEDIPQV---LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP--SALFVSM 219 (902)
Q Consensus 146 ~~r~~al~~L~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~--~~~~~~~ 219 (902)
...+.++.+|..++...++. +.++ ..+-..++.++..+.. .++.+...|++.+.....+-+ ..+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe------~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-- 1811 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSE------ILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-- 1811 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccch------hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh--
Confidence 35677899998888876642 2211 1223456667776654 578899999998887765422 11111
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHH--HHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 220 ~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
...+..+++++ ++-+..|..++..|..+... ++.....+. .++...--.+....+..|..+.+.+..+.-.
T Consensus 1812 ~~vL~~LL~lL-HS~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1812 CNVLTTLLTLL-HSQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred hhHHHHHHHHH-hcChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 12355555655 34578899999999888753 333322221 1222221223345667888888888877544
No 346
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=63.14 E-value=96 Score=28.37 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhhc---------CCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 002596 11 EQGFNEICRLLEQQISPS--STADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL 79 (902)
Q Consensus 11 ~~~~~~~~~~l~~~~s~~--~~~~r~~a~~~L~~~~~---------~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i 79 (902)
.+|+..+.+.++.....+ .++.-.-+-+.+.++-+ .+.|+.-....... +..+.++-+.|.-.|.+.+
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLAILESIV 88 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHHHHHHHH
Confidence 457778888888755311 11133444444444432 34577666666643 3458899999999998888
Q ss_pred HhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHH
Q 002596 80 RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (902)
Q Consensus 80 ~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~ 138 (902)
...-.....-.++--.+.|+..|..++..+...+-..+-.+..+.+..++.++...+.+
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~ 147 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQ 147 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 54211001111112235677888889999988887777777777677777777666543
No 347
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=62.76 E-value=81 Score=33.07 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
|......|.-++.=.++ -.+.+..|.+.+++.+|.|.-.|+..++.+...+...+.-+.....|..-+..++
T Consensus 26 W~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred HHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH
Confidence 88766555544432222 2346778888999999999999999888888777653222223333333344443
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhc
Q 002596 486 KRILDTNKRVQEAACSAFATLEEEAA 511 (902)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~ 511 (902)
.. ..+++|++.....+....+.++
T Consensus 98 ~~--~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 98 ES--KAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred hh--cccHHHHHHHHHHHHHHHHHhc
Confidence 32 4568888888888888888764
No 348
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=62.33 E-value=1.2e+02 Score=27.17 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=61.1
Q ss_pred HHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-ccc--
Q 002596 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEE-- 513 (902)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~-~~~-- 513 (902)
.+++.|+-....++.+|..++.. ...-+.+.+.+++.+.+++-..|......+..|++.+ ...
T Consensus 12 ~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~ 77 (139)
T PF12243_consen 12 QLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKY 77 (139)
T ss_pred HHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccc
Confidence 34555555556666666555543 2334577888888888888889999999999999987 223
Q ss_pred chHhHHHHHHHHHHHHhc---cch---hhHHHHHHHHHHHH
Q 002596 514 LAPRLEIILQHLMMAFGK---YQR---RNLRIVYDAIGTLA 548 (902)
Q Consensus 514 ~~p~l~~i~~~l~~~l~~---~~~---~~~~~~~~al~~l~ 548 (902)
-.+|...+-..|..++.. .+. .++..+...+..+-
T Consensus 78 ~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 78 NYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 566666554444444432 221 35555555555443
No 349
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.59 E-value=1.1e+02 Score=32.05 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=57.8
Q ss_pred chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhccC-CCChHHHHHHHHHHHhhH
Q 002596 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFS 461 (902)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~~~ 461 (902)
+.-...+..+.+.++..+ +.+..-|+..+++++.+|++.+...+. +....+...+. ..++.|+......+.+.+
T Consensus 41 ~~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred cccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 344567788888999998 999999999999999999976643221 13333444444 678999998888888888
Q ss_pred HHHh
Q 002596 462 KFIV 465 (902)
Q Consensus 462 ~~~~ 465 (902)
+.+.
T Consensus 118 ee~K 121 (462)
T KOG2199|consen 118 EEFK 121 (462)
T ss_pred HHhc
Confidence 7664
No 350
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.22 E-value=1.4e+02 Score=26.92 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHH-HHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 664 LRDMLLQCCM-DDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDI-AAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 664 l~~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~-l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
.+..|.+.++ +.++.+...|+.++..++++||..|...+ ..++.. +.+.+...... ...|+.-++..+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~-~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNP-PTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCC-cHHHHHHHHHHHHHHHHHh
Confidence 5566666665 46788888899999999999998877544 267766 66666543210 3478888888888777665
Q ss_pred h
Q 002596 740 R 740 (902)
Q Consensus 740 ~ 740 (902)
+
T Consensus 118 ~ 118 (141)
T cd03565 118 R 118 (141)
T ss_pred C
Confidence 4
No 351
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=56.02 E-value=1.9e+02 Score=32.38 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=65.0
Q ss_pred cCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--hhhHHhH
Q 002596 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVSM 219 (902)
Q Consensus 142 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~ 219 (902)
+-++..|-.++..|+..+...++.+... ..+...-=.|.|.+..||....+++..+....| +.+...+
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~yf~k~----------~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDYFRKI----------LGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHHHHhh----------hcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4456777778888877777666543210 111222234677889999999999999998776 3445556
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHh
Q 002596 220 DQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIE 250 (902)
Q Consensus 220 ~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~ 250 (902)
+.+...++..+ .|.+. ||..+.+.+..+..
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 66666666654 35555 89888888877654
No 352
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=55.93 E-value=2.7e+02 Score=29.39 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhh----HHhHHH---HHHHHHHhhC-CCC---------HHHHHHHHHH
Q 002596 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL----FVSMDQ---YLQGLFLLSN-DPS---------AEVRKLVCAA 244 (902)
Q Consensus 182 ~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~----~~~~~~---~l~~l~~~~~-~~~---------~~vr~~~~~~ 244 (902)
+..+...|+.....+...+++.|..++.+.+... ...++- .++.+...-. +.+ +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788899999888888899999999998665433 233321 2333332111 111 2899999999
Q ss_pred HHHHHhhChhhhhh-hH--HHHHHHHHhhhcCCCHHHHHHHHHHHHH-hhcc
Q 002596 245 FNLLIEVRPSFLEP-HL--RNLFEYMLQVNKDTDDDVALEACEFWHS-YFEA 292 (902)
Q Consensus 245 l~~l~~~~~~~~~~-~l--~~i~~~~~~~~~~~~~~v~~~al~~l~~-l~~~ 292 (902)
+..+....+..+.. .+ ..++..+++.+...+.++....++++.. +...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~ 189 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKD 189 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccC
Confidence 88888766554332 22 1346666677777777788888887765 4433
No 353
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.69 E-value=4.7e+02 Score=32.08 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=83.1
Q ss_pred ccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc--hhhHHh
Q 002596 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SALFVS 218 (902)
Q Consensus 141 ~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~~~~~ 218 (902)
.+-++..|..++.-|+..+..+++.+-+ ...+..+-=.|.|.+..||..++++|..+.+.-. +.+...
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~----------dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF 366 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLS----------DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF 366 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhc----------chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 4567899999999999999998887644 2334444446788999999999999999987621 223333
Q ss_pred HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 002596 219 MDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (902)
Q Consensus 219 ~~~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~ 288 (902)
...|=..+..++ .|-+..||...+....... .+..+.. .=+..+..++-+.+..++..|-+|+..
T Consensus 367 tsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~d---~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 367 TSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLSD---KDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--cccccCh---hHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 344455666666 3445556655444433322 2222211 112234445567777888888888765
No 354
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=55.56 E-value=25 Score=27.24 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhh
Q 002596 725 ANNACWAIGELAVKARQEISPIVM--TVVLCLVPILKHSEELNKSLIENSAITLGRLAWV 782 (902)
Q Consensus 725 ~~~a~~alg~l~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 782 (902)
.+.|.||+|.++..-. .+ ++++ .+++.++++..... .-++|-.+..++|.++..
T Consensus 4 lKaaLWaighIgss~~-G~-~lL~~~~iv~~iv~~a~~s~--v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GI-QLLDESDIVEDIVKIAENSP--VLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-HH-HHHhhcCHHHHHHHHHHhCC--ccchHHHHHHHHHHHhCC
Confidence 3678999999985421 12 3443 57888888888775 578999999999988864
No 355
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=54.52 E-value=1.7e+02 Score=26.76 Aligned_cols=37 Identities=11% Similarity=0.334 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Q 002596 583 FPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQ 619 (902)
Q Consensus 583 ~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~ 619 (902)
......+..+...++.-|.||+..+++.+.++|....
T Consensus 85 itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~ 121 (153)
T PF08146_consen 85 ITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFN 121 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677778888888899999999999998888653
No 356
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=54.31 E-value=28 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 002596 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (902)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (902)
...+++|+.+++.|..+++..|..+..+++++.+..
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356799999999998888888888888888887654
No 357
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.27 E-value=2.5e+02 Score=28.44 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccch
Q 002596 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR 534 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~ 534 (902)
+.+-.+++..++..+.+..+-+|..+...|..+.....-. .|+-++++..+.+.++..-.
T Consensus 183 P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~ 242 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLW 242 (262)
T ss_pred chhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccH
Confidence 4555677888888888888899999999999998876332 44777888888888876543
No 358
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=54.24 E-value=2.5e+02 Score=28.38 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred cccHHHHHHHHHHHHHhhcC------c-----chhhhhHHHHHHhhc-cCCCCchHHHHHHHHHHHHHHhcch----hhh
Q 002596 364 VWNLRKCSAAALDVLSNVFG------D-----EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCI----KGL 427 (902)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~------~-----~~~~~l~~~l~~~l~-~~~~~~~~~r~~a~~~l~~l~~~~~----~~~ 427 (902)
.|..-+-+..++..++...+ . +.+..+...+...|. -.. .-.-+++.-++..+++.+. ..+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rH---rGAfe~~~~~f~~lc~~l~~~~~~~l 136 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRH---RGAFESVYPGFTALCRRLWSSNNPEL 136 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHhcCCCchH
Confidence 57777788888888886542 1 223333333333333 233 3345566666666666554 222
Q ss_pred hhhHHHHHHHHhhccCCC-Ch---HHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCH--------HH
Q 002596 428 YPHLSEIVAFLIPLLDDK-FP---LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK--------RV 495 (902)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~-~~---~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~--------~v 495 (902)
......-+..++..+.+. .. ..|+.|---+.-.+- +.. .+......+...+..|++....+.. .-
T Consensus 137 ~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~ai-L~a--e~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~ 213 (255)
T PF10350_consen 137 SELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAI-LSA--EPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLP 213 (255)
T ss_pred HHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHH-Hhc--CCCcchhHHHHHHHHHHHHhcCCcccccccccchH
Confidence 222233444555555544 22 455554221111111 110 1112236778888888887775432 46
Q ss_pred HHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHhc
Q 002596 496 QEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGK 531 (902)
Q Consensus 496 ~~~a~~al~~l~~~~--~~~~~p~l~~i~~~l~~~l~~ 531 (902)
|.+|+..|..+.... ++.+.||+.+.+..-++.+.+
T Consensus 214 qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 214 QVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 888999998888765 677888888777655554443
No 359
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=53.88 E-value=2.5e+02 Score=31.33 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=56.9
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 662 SNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 662 ~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
+.++.+|++.+.-+.++-+. .+..|+ ..+++.++..|..+. ..++..||+..|..++...
T Consensus 33 ~~ImDlLLklIs~d~~~~~~---------------~ilewL~~q~LI~~Li~~L~p~~---~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 33 PAIMDLLLKLISTDKPESPT---------------GILEWLAEQNLIPRLIDLLSPSY---SSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred cHHHHHHHHHHccCcccchH---------------HHHHHHHHhCHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHh
Confidence 45777777766544433333 333443 467778888887543 4578889998888887544
Q ss_pred hh------------hhhhHH--HHHHHHHHHhhcCChhhhhhHHHHHHHHHHHHhhhc
Q 002596 740 RQ------------EISPIV--MTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVC 783 (902)
Q Consensus 740 ~~------------~~~~~~--~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 783 (902)
.. .+...+ +..+..|+..+-... ..+..-+++..+-.+++++
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~--~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ--GGSSLVNGVSILIELIRKN 150 (475)
T ss_pred hccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhc
Confidence 31 111111 345555555544322 1455556666666666554
No 360
>PF14961 BROMI: Broad-minded protein
Probab=53.41 E-value=1.3e+02 Score=36.82 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=54.0
Q ss_pred HHHhhhhh-cCChHHHHHHHHHHHHHHhhc--CcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhc
Q 002596 96 SELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (902)
Q Consensus 96 ~~ll~~l~-~~~~~vr~~~a~~l~~i~~~~--~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (902)
+.+++-|. +....||..+.+.+..+--.+ ..+.|+.+-..|...+.++|+...+.+++...+.....+..
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 34444454 457789999877776654333 56899999999999999999999999999998888765544
No 361
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=52.33 E-value=2e+02 Score=31.00 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHHHHhhchHhhHHhHH-HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhh-HHH-HH
Q 002596 674 DDASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISP-IVM-TV 750 (902)
Q Consensus 674 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~-~~~-~i 750 (902)
.+.++...+..++++.+.++..+.....+. ..+..++--.... ++.+-..|+.|||.++.+++...+. .++ .+
T Consensus 233 ~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~ 308 (832)
T KOG3678|consen 233 REPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT----DPALLRHCALALGNCALHGGQAVQRRMVEKRA 308 (832)
T ss_pred cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh
Confidence 456677778899999999987765544332 2233322222222 4577778889999999988765432 333 23
Q ss_pred HHHHHHhhcCChhhhhhHHHHHHHHHHHHh
Q 002596 751 VLCLVPILKHSEELNKSLIENSAITLGRLA 780 (902)
Q Consensus 751 l~~l~~~l~~~~~~~~~~~~~~~~~l~~l~ 780 (902)
-+-|.++-... ++-.|-.+|.+++.++
T Consensus 309 ~EWLF~LA~sk---Del~R~~AClAV~vla 335 (832)
T KOG3678|consen 309 AEWLFPLAFSK---DELLRLHACLAVAVLA 335 (832)
T ss_pred hhhhhhhhcch---HHHHHHHHHHHHhhhh
Confidence 33444433322 3566777777777666
No 362
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.32 E-value=6.8e+02 Score=32.90 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=118.9
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcC--ChHH-HHHHHHHHHHHHhhcCc---
Q 002596 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHI-RSTVGTIVSVVVQLGGI--- 126 (902)
Q Consensus 53 l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~--~~~v-r~~~a~~l~~i~~~~~~--- 126 (902)
+...+.+ ...+.+|++..+.+.+.+.. |..+....+-. .+-..+.|. ++.. ...+..+++......++
T Consensus 56 l~s~~~~--~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~ 129 (2067)
T KOG1822|consen 56 LISRLTN--GAGPPTRKLISVAIARLISN-GDSFSLYSRLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG 129 (2067)
T ss_pred HHHHHcc--CCCchhHHHHHHHHHHHHhc-cchhhHHHHHH---HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc
Confidence 4445543 56788999999999888876 77665544332 222334343 3333 33444566666655543
Q ss_pred CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 002596 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (902)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~ 206 (902)
....+.+..+....+.....+|...+..+...++.++..-... .....++-.....+.+.+-.||.++.+|+..
T Consensus 130 ~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~------~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a 203 (2067)
T KOG1822|consen 130 RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAAT------ATHKAIRLIAKNSLLDRSFNVKIAAARCLKA 203 (2067)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHH------HHHHHHHHHHhhhhhhhhHHHHHHhHHHHHH
Confidence 2356777777787777777778788888877777665321100 1124444445555566677799999999999
Q ss_pred Hhcccchhh-HHhHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhC
Q 002596 207 FIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (902)
Q Consensus 207 ~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 252 (902)
+....+..+ ...++..-..++......+.++|...++++..+....
T Consensus 204 ~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 204 FSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred HHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 887655444 3334444445555566677889999999988887654
No 363
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.29 E-value=6.1e+02 Score=32.63 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHhhcccccCCCCchh--HHHHHhhhHHHHHHHHhhhHHhhh
Q 002596 583 FPLLECFTSIAQALGAGFTQF-AQPVFQRCINIIQTQQLAKVDSVAAGAQYDKE--FVVCCLDLLSGLAEGLGSGIESLV 659 (902)
Q Consensus 583 ~~~l~~l~~i~~~~g~~f~~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~--~~~~al~~l~~l~~~~~~~~~~~~ 659 (902)
...++.+-.+....|..|.+. -+.++..++.++..... +.+.. +..||. ....|+..+..+...+-+....++
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~---~~~~~-~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL 1267 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKL---DEDES-EKDEWLSTTCNHALQALVDLFTQFFKQLNNLL 1267 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCc---ccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888889999988754 34455544444332110 00100 111342 345677788888887777777777
Q ss_pred ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHH
Q 002596 660 AQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQA 700 (902)
Q Consensus 660 ~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 700 (902)
+. ++.++..|.+.++..+-..+..++-.++...+..|..
T Consensus 1268 ~~--~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse 1306 (1514)
T KOG0929|consen 1268 PK--VLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSE 1306 (1514)
T ss_pred HH--HHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCH
Confidence 65 8888889998888888888888888888887766653
No 364
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.13 E-value=20 Score=21.78 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIA 420 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~ 420 (902)
|..|+.|..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 678999999999884
No 365
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=51.05 E-value=4.1e+02 Score=30.02 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=88.1
Q ss_pred hhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhhhHH
Q 002596 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (902)
Q Consensus 229 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~ 308 (902)
...|-++.+|..+...+...+...|+.+.... .+.+.--.+.|....+|......+.-+++.......++.+++..-.
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34566778899999999998888888765322 2222222356778889999988888888874445566666666655
Q ss_pred HHHhhccCChhhhhhhhhhccCCCCCCCCCCCcccccccCCCCCCCCCCCccccccccHHHHHHHHHHHHHhhc--Ccch
Q 002596 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEI 386 (902)
Q Consensus 309 ~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~--~~~~ 386 (902)
-++..+.... + .+|.++.+.+..+.... .+.
T Consensus 361 rILE~~r~D~---------------------------------------------d-~VRi~sik~l~~lr~lg~L~~S- 393 (740)
T COG5537 361 RILEFLRTDS---------------------------------------------D-CVRICSIKSLCYLRILGVLSSS- 393 (740)
T ss_pred HHHHHHhhcc---------------------------------------------c-hhhHHHHHHHHHHHHhcccchh-
Confidence 5554444210 1 28999999988776553 121
Q ss_pred hhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhh
Q 002596 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (902)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 428 (902)
-+..+..++-+.. ++.|+.-...+..+++...+.+.
T Consensus 394 ---eIlIvsscmlDi~---pd~r~~~~E~v~~icK~~aevik 429 (740)
T COG5537 394 ---EILIVSSCMLDII---PDSRENIVESVESICKIDAEVIK 429 (740)
T ss_pred ---HHHHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHH
Confidence 1223344455555 66566544455555444333333
No 366
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=50.66 E-value=2.4e+02 Score=27.15 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhccc
Q 002596 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (902)
Q Consensus 492 ~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~ 554 (902)
....-..+...++.+.+.++..-.|++.+++..+.+.-...+...+..+-.+++..++++|.+
T Consensus 13 y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 13 YQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 345566777778888888887788899999988888877766667778889999999999865
No 367
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.01 E-value=1.1e+02 Score=33.62 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH--HHHHHHHHHHHhcc--chhhHHHHHHHHHHHHHHhc
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG 552 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l--~~i~~~l~~~l~~~--~~~~~~~~~~al~~l~~~~~ 552 (902)
-..++.+|.+.+.+.+++|+..|...|..++++|+..|--.+ ..+++.++...... ...++..++..|.+-..+.+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 348889999999998899999999999999999988764222 35666667776644 44677778888887777776
Q ss_pred c
Q 002596 553 F 553 (902)
Q Consensus 553 ~ 553 (902)
.
T Consensus 116 ~ 116 (470)
T KOG1087|consen 116 G 116 (470)
T ss_pred C
Confidence 5
No 368
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.92 E-value=1.1e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002596 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 179 ~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (902)
+.+...+..+|.+++++|+..|++|+..+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 566777889999999999999999999874
No 369
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.56 E-value=93 Score=34.25 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCC
Q 002596 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (902)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~ 175 (902)
.+.-..|.+++..+--.+|..|- .+ .+.-++.+..|.+.+++.++.+..-||.+|-.+++.|++.|..++..
T Consensus 8 kAT~~~l~~pDWa~NleIcD~IN----~~-~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~--- 79 (470)
T KOG1087|consen 8 KATSESLAEPDWALNLEICDLIN----ST-EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVAS--- 79 (470)
T ss_pred HhhcccccCccHHHHHHHHHHHh----cC-ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHH---
Confidence 33444566777766554444332 11 22335899999999999888888999999999999999977543322
Q ss_pred cchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccc
Q 002596 176 CPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP 212 (902)
Q Consensus 176 ~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~ 212 (902)
..+++.++...... +..||..++..|..+-+..+
T Consensus 80 ---k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 80 ---KEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred ---HHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 56677777666553 67899999999988876543
No 370
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=48.41 E-value=79 Score=30.46 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=52.4
Q ss_pred HHHHHhhcCc-chhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHH
Q 002596 375 LDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (902)
Q Consensus 375 l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a 453 (902)
++.++..+.. ...+.+++......++.. -|..|.+...++.-.-+. +....+++.+-..+.|.+..|+.+.
T Consensus 103 vD~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAi 174 (222)
T COG4912 103 VDTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAI 174 (222)
T ss_pred HHHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHH
Confidence 4555555543 455566665533333322 266666655555543332 2334678888888999999999999
Q ss_pred HHHHHhhHHHH
Q 002596 454 CWTLSRFSKFI 464 (902)
Q Consensus 454 ~~~l~~~~~~~ 464 (902)
-|+|.+++.+.
T Consensus 175 gWaLrq~~k~~ 185 (222)
T COG4912 175 GWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHhhc
Confidence 99999999844
No 371
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.58 E-value=5.4e+02 Score=30.10 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHh-hccC
Q 002596 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY-FEAQ 293 (902)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l-~~~~ 293 (902)
+..|++.|-.+..|+=+.++..++..+..+....|+.=. .++..+++.+.+++..+...|--.+..+ +.++
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 344555665666677789999999999999888887533 4555666677788777777776665554 4444
No 372
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=45.64 E-value=1.1e+02 Score=26.38 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccch---hhHHhHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHhhChh
Q 002596 181 FLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPS 254 (902)
Q Consensus 181 l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~ 254 (902)
.+..++..|... +++....|+++...++..-+. ++..+-..++..+..+-+.-+ ++.-..-.+++..++-..|.
T Consensus 4 YlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~ 83 (114)
T PF10193_consen 4 YLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPE 83 (114)
T ss_dssp -HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGG
T ss_pred hHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhH
Confidence 345566667643 577788999999999987666 777777788888877654322 22333444566666667787
Q ss_pred hhhhhHHH
Q 002596 255 FLEPHLRN 262 (902)
Q Consensus 255 ~~~~~l~~ 262 (902)
...+++-.
T Consensus 84 ~~~~~L~~ 91 (114)
T PF10193_consen 84 KVAPYLTE 91 (114)
T ss_dssp GHHH-HHH
T ss_pred HHHHHHHH
Confidence 76665443
No 373
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=45.37 E-value=3e+02 Score=26.75 Aligned_cols=166 Identities=12% Similarity=0.079 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhcc
Q 002596 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (902)
Q Consensus 63 ~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~ 142 (902)
..|..|..|--.++. .+.+....+...+-.+..++....|..+...+....+....+ -++.+...+..
T Consensus 24 ~~P~~R~lak~~~~~--------~~~~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~----~~~~~~~~l~~ 91 (208)
T cd07064 24 KTPERRALSKPFLKE--------SKLPDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE----DLPLLEELITT 91 (208)
T ss_pred ChHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHcC
Confidence 356777776555432 221222333333334555666677776665555433222222 24444445544
Q ss_pred -CChhhhhH-HHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHH
Q 002596 143 -NDINHMEG-AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (902)
Q Consensus 143 -~~~~~r~~-al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (902)
++++.... +-.+++.+.... +...+.+.....+++.-.|..|+-+...+.... .++
T Consensus 92 ~~~Wd~vD~~~~~i~g~~~~~~----------------~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~ 149 (208)
T cd07064 92 KSWWDTVDSLAKVVGGILLADY----------------PEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTD 149 (208)
T ss_pred CchHHHHHHHHHHHhHHHHhCC----------------hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHH
Confidence 34555543 333333333210 344677888899999999999887655544431 123
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhChhhhhhhHHH
Q 002596 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (902)
Q Consensus 221 ~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~ 262 (902)
.+...+...++|++.-+++++--+|-.+....++.+..++..
T Consensus 150 ~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~ 191 (208)
T cd07064 150 LLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAA 191 (208)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 334445556667767788888888899988888876666543
No 374
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=45.21 E-value=3e+02 Score=26.73 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcC-CChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHH
Q 002596 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIR 110 (902)
Q Consensus 32 ~r~~a~~~L~~~~~~-p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr 110 (902)
.|+-|...+...... .++...+++-|-+ +.--+.|..|..+|..... .++++....+.. .+.. -.+..+-
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~-~l~~--~~~Wd~v 98 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYKK----FLTPEDLPLLEE-LITT--KSWWDTV 98 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH-HHcC--CchHHHH
Confidence 666666666665542 3444445554543 3446899999888875432 345554443433 2222 1344444
Q ss_pred HHHHH-HHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHh
Q 002596 111 STVGT-IVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (902)
Q Consensus 111 ~~~a~-~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 189 (902)
...+. +++.+... -+.+.+.+.....+++.-.|..|+.+.....+. ...+.++..+...+
T Consensus 99 D~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~--------------~~~~~l~~~~~~~~ 159 (208)
T cd07064 99 DSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK--------------TDTDLLFEIILANL 159 (208)
T ss_pred HHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhC
Confidence 43333 33443322 245577888899999988888887655443332 11255666677777
Q ss_pred cCCCHHHHHHHHHHHHHHhcccchhhHHhH
Q 002596 190 QSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (902)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (902)
.+++.-|+++.--+|..+....|+.+...+
T Consensus 160 ~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 160 GSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888888999988999999888777665554
No 375
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=43.73 E-value=46 Score=23.05 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhc
Q 002596 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (902)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~ 124 (902)
..+++|+.+++.|...+.. |..+..+++++.+..
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 3578999999999877665 888888888887654
No 376
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=5.1e+02 Score=28.87 Aligned_cols=310 Identities=16% Similarity=0.144 Sum_probs=148.0
Q ss_pred hhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002596 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (902)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (902)
...+..+.+++-... ...+.+|++.+|.-..+..+ ..+..+-.+-..+++++...+.+|+--+|-...
T Consensus 412 d~gl~~Ldkyly~de---~~~KaGaLLGig~s~~~v~~----E~~palalLs~yl~s~s~k~~~aaiLGlg~afs----- 479 (881)
T COG5110 412 DKGLETLDKYLYADE---SYRKAGALLGIGLSGLRVFE----ERPPALALLSNYLQSSSSKHVIAAILGLGAAFS----- 479 (881)
T ss_pred HhhHHHHHHHHhcCc---ccccccceeeeeeccccccc----ccchHHHHHHHhccCCchHHHHHHHhhhHHhhc-----
Confidence 345677777777666 66677777666644433332 334455666677888888888888777765432
Q ss_pred hcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHH-HHHHhcccchHhHHHHHHHHHHHHhcc-chhhHHHHHHH
Q 002596 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAAC--SAFAT-LEEEAAEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDA 543 (902)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~--~al~~-l~~~~~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~~~~a 543 (902)
....++++..+...+.+.+..+...+. -+|+. |+..|...+. ..|++.++..-... +..-.+...-+
T Consensus 480 ------Gt~~eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t---s~ilqtf~Er~~~e~~tqw~RFlaLg 550 (881)
T COG5110 480 ------GTQAEEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT---SLILQTFVERGKIESETQWFRFLALG 550 (881)
T ss_pred ------CCcHHHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH---HHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 223456666666666665554444333 33333 3444433332 23444333322110 11111212222
Q ss_pred HHHHHHHhcccCCchhhhhhhhHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhh
Q 002596 544 IGTLADAVGFELNQPVYLDILMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLAKV 623 (902)
Q Consensus 544 l~~l~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~~~ 623 (902)
++.+. .|.. ...+.+...++.+ +..+....+.+-..+...|.+=.- +++.++.+-.. .
T Consensus 551 La~Lf--~g~~----d~~d~v~eti~aI-------eg~ls~~~eiLv~~c~Y~GTGdvl----~Iq~lLhv~~e-----~ 608 (881)
T COG5110 551 LASLF--YGRK----DQVDDVEETIMAI-------EGALSKHEEILVKGCQYVGTGDVL----VIQSLLHVKDE-----F 608 (881)
T ss_pred HHHHH--cccc----chhHHHHHHHHHh-------cchhhhhHHHHHhhceecccCcHH----HHHHHHhccCC-----C
Confidence 22222 2222 2233333333221 111223344444445555543211 22222211000 0
Q ss_pred cccccCCCCchhHHHHHhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhchHhhHHhHH
Q 002596 624 DSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLS 703 (902)
Q Consensus 624 ~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 703 (902)
..|+.. +.+.....+.+++.-.-++|+++..-+ .+..+...+.-.++.+|...--+.|-+....++ -
T Consensus 609 ~~D~~k---~~ea~ie~~a~Lg~AliamGedig~eM----vlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ------m 675 (881)
T COG5110 609 TGDTLK---NEEALIESLALLGCALIAMGEDIGSEM----VLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ------M 675 (881)
T ss_pred Ccccch---hhHHHHHHHHHhhhHHhhhcchhhHHH----HHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc------h
Confidence 111100 112333345556655666777654322 333444444456677776544444444433321 1
Q ss_pred HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcC
Q 002596 704 DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKH 760 (902)
Q Consensus 704 ~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~ 760 (902)
.++..+.+...+. +.+|.-|++.++|-+.... ...-+.+++.++..-...
T Consensus 676 ~vfDtL~r~shd~----dl~v~~ntIfamGLiGAGT---~NaRlaqlLrQlaSYY~k 725 (881)
T COG5110 676 NVFDTLERSSHDG----DLNVIINTIFAMGLIGAGT---LNARLAQLLRQLASYYYK 725 (881)
T ss_pred HHHHHHHHhcccc----chhHHHHHHHHhhccccCc---chHHHHHHHHHHHHHHhh
Confidence 4666777766666 5688899999999764321 123355556665554443
No 377
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=42.15 E-value=5.9e+02 Score=29.25 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=48.3
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHcCchh------hhhhHHHHhhHhhc-ccccCcHHHHHHHHHHHHHHHhh--c
Q 002596 796 QPWCIALSMIRDDTEKEDAFRGLCAMVKANPSG------ALSSLVFMCRAIAS-WHEIRSEELHNEVCQVLHGYKQM--L 866 (902)
Q Consensus 796 ~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~------~~~~l~~i~~~i~~-~~~~~~~~~~~~~~~~l~~~~~~--~ 866 (902)
..++..|..+..+..+..+...+.++...+... +.+-+-..|+.+.. |+-...+|.+.+..+++.++-++ |
T Consensus 545 n~Fi~ilDl~~~~~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da~~~~~~ed~kR~~s~LI~~f~~mVdf 624 (930)
T KOG3682|consen 545 NSFIKILDLIGYDIQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDAYRLEESEDVKRAASQLICSFLSMVDF 624 (930)
T ss_pred hhHHHHHHHhcccchhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 445555666565566777777777777665432 23444444444422 32223456778888998888766 4
Q ss_pred ChhhHHHHHh
Q 002596 867 RNGAWDQCMS 876 (902)
Q Consensus 867 ~~~~~~~~~~ 876 (902)
| .++++.+.
T Consensus 625 g-~~~eq~L~ 633 (930)
T KOG3682|consen 625 G-TNLEQCLE 633 (930)
T ss_pred c-ccHHHHHH
Confidence 7 37777544
No 378
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.63 E-value=4.2e+02 Score=29.27 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=73.9
Q ss_pred HHHHHhhchHhhHHhHHHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhcCChhhhh
Q 002596 687 LGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNK 766 (902)
Q Consensus 687 l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~ 766 (902)
++.++.+++..+..|=.++...+...-..= .++.|...+.||--+-. ..-+ ....+++.+.+++...+ .
T Consensus 3 ~aqv~~~yp~~~a~FP~el~dLL~~~~~~l----p~~Lr~~i~~~LiLLrN--k~~i--~~~~LL~lff~l~~~~d---k 71 (616)
T KOG2229|consen 3 VAQVCPCYPEVLANFPSELKDLLRTNHTVL----PPELREKIVKALILLRN--KNLI--VAEDLLELFFPLLRCGD---K 71 (616)
T ss_pred hhhcccccHHHHHhhhHHHHHHHHhccccC----CHHHHHHHHHHHHHHhc--cCcC--CHHHHHHHHHHHHhcCc---h
Confidence 445566666555544344444433332221 46788888887765532 2212 24567888888888775 4
Q ss_pred hHHHHHHHHHHHHhhh-cCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHc
Q 002596 767 SLIENSAITLGRLAWV-CPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKA 824 (902)
Q Consensus 767 ~~~~~~~~~l~~l~~~-~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~ 824 (902)
..|.-+..-+-..++. +....-..+...++.++-.|-...|......+...+|.|.+.
T Consensus 72 ~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr 130 (616)
T KOG2229|consen 72 NLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKR 130 (616)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh
Confidence 5666555555444442 222233346777888877776656655566777777877765
No 379
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=40.59 E-value=2.3e+02 Score=25.43 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhcccCC
Q 002596 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (902)
Q Consensus 477 ~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~ 556 (902)
.+.+...+...+.+++..||..|..++-.+-. +.+.||-+. |.+++++.. . -+.+..+....+....
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~----L~~Lldd~~---f---rdeL~~f~~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDN----LENLLDDKT---F---RDELTTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHH----HHHHcCcch---H---HHHHHhhcccCCcCCC
Confidence 35666677788889999999999988876532 355666443 455555431 2 2344444433332222
Q ss_pred chhhhhhhhHHHHHHH
Q 002596 557 QPVYLDILMPPLIAKW 572 (902)
Q Consensus 557 ~~~~~~~ll~~l~~~l 572 (902)
+++.=+.+||.++.++
T Consensus 82 ~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 82 EEEHRPELMPVVLRIL 97 (141)
T ss_pred CHHHHhHHHHHHHHHH
Confidence 2355556666655544
No 380
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=40.51 E-value=3.9e+02 Score=26.79 Aligned_cols=112 Identities=11% Similarity=0.108 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh---------ChhhhhhhHH
Q 002596 193 HTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV---------RPSFLEPHLR 261 (902)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~---------~~~~~~~~l~ 261 (902)
-..+|..++..++.+++....+...++ .++++.++......++-.+..|.-.+..+... .++.+. .+.
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~-av~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFF-AVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHH-HHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHH-HHH
Confidence 357899999999999987666555544 25667777766555555555555555555432 122222 233
Q ss_pred HHHHHHHhh-hcCCCHHHHHHHHHHHHHhhccCCchhhHHhhhhh
Q 002596 262 NLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (902)
Q Consensus 262 ~i~~~~~~~-~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~ 305 (902)
.++..|+.. ..+....+-...+.+...+++.+.....++..+|.
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~ 232 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPD 232 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-G
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcH
Confidence 344444433 34556666677888888888876555555555444
No 381
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=40.29 E-value=6.3e+02 Score=29.10 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhcc----cchHhHHHHHHHHHHHHh
Q 002596 474 REQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAE----ELAPRLEIILQHLMMAFG 530 (902)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~--~~v~~~a~~al~~l~~~~~~----~~~p~l~~i~~~l~~~l~ 530 (902)
+.+.+..+..|++.+.|++ ..+|.+|+.=|++|+..++- .+...+..++..+...+.
T Consensus 341 ~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~~~y~~ 403 (563)
T PF05327_consen 341 PELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWLHDYID 403 (563)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666654 56688888888888876532 233344444444444443
No 382
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=40.23 E-value=78 Score=34.74 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcchhhhhhhH--HHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH-HHHHHHHH
Q 002596 409 REAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLL 485 (902)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~ 485 (902)
--+++.+|-+++.... .+..-+ ..+...+++.|.+|...|...+.-.+..+.-.+.+ ....++ ..++..+.
T Consensus 406 ~~a~~l~LkS~SrSV~-~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-----L~~~fL~~~iIdvl~ 479 (743)
T COG5369 406 FVAIVLFLKSMSRSVT-FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-----LGAGFLEKSIIDVLV 479 (743)
T ss_pred HHHHHHHHHHhhHHHH-HHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc-----hHHHHHHhhHHHHHH
Confidence 3455566666655433 112112 13777888899998887776654444333222211 122233 24666666
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhccc--chHhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 002596 486 KRILDTNKRVQEAACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (902)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~--~~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~ 549 (902)
..+...+...|....|.+..+.-++.+. +.+....=+..++...+++..+++...+..+..+..
T Consensus 480 ~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 480 NLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred HHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 6666556788999999999888877433 444434447778888888888888888888877654
No 383
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=39.89 E-value=7.2e+02 Score=29.63 Aligned_cols=162 Identities=9% Similarity=0.007 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHH
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
+..|.-+.++..+... +..+...-..+.....+.+......--..|..+..++..++.+. ...+...++..+.
T Consensus 31 pn~s~m~kL~~YAasn--p~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq-----~n~F~ssfL~mv~ 103 (819)
T KOG1877|consen 31 PNKSKMEKLTFYAASN--PSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQ-----INLFVSSFLRMVQ 103 (819)
T ss_pred cccccHHHHHHHHhhC--hhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhh-----hHHHHHHHHHHHH
Confidence 4445544444444332 22222222223444555555555555566777778877777643 4667788888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHhccch-h----hHHHHHHHHHHHHHHh-----cc
Q 002596 486 KRILDTNKRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGKYQR-R----NLRIVYDAIGTLADAV-----GF 553 (902)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~--~~~p~l~~i~~~l~~~l~~~~~-~----~~~~~~~al~~l~~~~-----~~ 553 (902)
+.+.+.+..++..+|.++..|+....+ ...--++.++..+.++...... + .+..-+.++..+.... ..
T Consensus 104 ~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ 183 (819)
T KOG1877|consen 104 KLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAA 183 (819)
T ss_pred HHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhh
Confidence 888888899999999999999976522 2222245566665555543221 1 1112344444443322 11
Q ss_pred cCCchhhhhhhhHHHHHHHhc
Q 002596 554 ELNQPVYLDILMPPLIAKWQQ 574 (902)
Q Consensus 554 ~~~~~~~~~~ll~~l~~~l~~ 574 (902)
.+-++..++.++|.+...++.
T Consensus 184 ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 184 TIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred hhhhhhhhccchhhHHHhhcc
Confidence 222223477788877665554
No 384
>PHA01351 putative minor structural protein
Probab=39.76 E-value=5.9e+02 Score=29.21 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=6.9
Q ss_pred HHHHHHHhh--cccc
Q 002596 880 PPVKDKLSK--YQVH 892 (902)
Q Consensus 880 ~~~~~~l~~--y~~~ 892 (902)
..++..++. ||+-
T Consensus 327 v~ird~it~vq~gil 341 (1070)
T PHA01351 327 VGIRDLITGVQYGIL 341 (1070)
T ss_pred chHHHHHHHHHhccc
Confidence 456665532 6643
No 385
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=39.39 E-value=56 Score=31.24 Aligned_cols=42 Identities=14% Similarity=0.444 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCC---------HHHHHHHhh--cccchhhhhhhhc
Q 002596 854 EVCQVLHGYKQMLRNGAWDQCMSALE---------PPVKDKLSK--YQVHDSIVTLIIK 901 (902)
Q Consensus 854 ~~~~~l~~~~~~~~~~~~~~~~~~l~---------~~~~~~l~~--y~~~~~~~~~~~~ 901 (902)
++..+|..+++ |++++.++. .+++++|+. |++..+++++||+
T Consensus 115 EF~~Lw~~i~~------Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ 167 (221)
T KOG0037|consen 115 EFKALWKYINQ------WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVR 167 (221)
T ss_pred HHHHHHHHHHH------HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHH
Confidence 35566666663 888887665 347888865 8888888888875
No 386
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=39.22 E-value=8.2e+02 Score=30.13 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHh
Q 002596 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL 140 (902)
Q Consensus 62 ~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l 140 (902)
+.+..+|..|+..|-..+..-- +.+...+..++++.++++.-..+|...+.+++.+.+...-+.| .++..+.+..
T Consensus 84 s~l~~~r~~aa~~Ll~~lq~~~---~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~~kai~a~-~vL~~i~~~~ 158 (1129)
T KOG1926|consen 84 SSLRPVRLAAAFQLLADLQELR---DAEELSYVLNRLIRGLSSDRESARLGFSLILTEVLRPKAIEAT-SVLSTILQVL 158 (1129)
T ss_pred hhcHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhccccchHH-HHHHHHHHHH
Confidence 5588899999888765544211 5567788899999999988889999999999998865545666 5555555543
No 387
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=38.97 E-value=3.1e+02 Score=25.18 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhcccchhhHHhH-H-HH
Q 002596 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSM-D-QY 222 (902)
Q Consensus 147 ~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~-~-~~ 222 (902)
...-++.++..+.+...- .| +..-+.++.++..+.+.. +..+...|+..|-.++..-+. ....+ . --
T Consensus 33 ~La~~L~af~eLMeHg~v----sW----d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~-ly~~V~~evt 103 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIV----SW----DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK-LYQLVEQEVT 103 (160)
T ss_pred HHHHHHHHHHHHHhcCcC----ch----hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH-HHHHHhccCC
Confidence 334456666666663211 11 123367778888888764 688999999999998875443 22221 1 12
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHhhChh
Q 002596 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (902)
Q Consensus 223 l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 254 (902)
++.+...+++++.+++..++..+..+....++
T Consensus 104 ~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 104 LESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 45566666678888999998888887765554
No 388
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=38.02 E-value=1.7e+02 Score=25.27 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=55.1
Q ss_pred HhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcc
Q 002596 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (902)
Q Consensus 98 ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 177 (902)
.++.|......|+....-++...- .-++++..+.+.+....+..+-..+.++..++..+....... .
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f 71 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------F 71 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------H
Confidence 344455444455554443333221 224667777777766666677788888888888765432111 1
Q ss_pred hhhhHHHHHHHh----cCCCHHHHHHHHHHHHHHhc
Q 002596 178 INIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIM 209 (902)
Q Consensus 178 ~~~l~~~l~~~l----~~~~~~vr~~al~~l~~~~~ 209 (902)
...+.|.+...+ ...++.+|....+.+..+-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 72 GDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 123333333222 22346788888888887765
No 389
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=37.29 E-value=3e+02 Score=24.54 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhhhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHhhcc
Q 002596 235 AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (902)
Q Consensus 235 ~~vr~~~~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 292 (902)
.......+..+....+..|+.+..+=..+++.+..++...++.++..|-+......+.
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 3455566677776667888888877778889999898877887888888877776654
No 390
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.11 E-value=4.3e+02 Score=26.21 Aligned_cols=108 Identities=8% Similarity=0.067 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHhcccchhhHHhH--HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhCh---------hhhhhhH
Q 002596 192 PHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP---------SFLEPHL 260 (902)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---------~~~~~~l 260 (902)
+..-.|..++..++.+++...+++...+ ..+++.++......++..+.-+..++..+..... +.| .++
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF-~av 215 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERF-SAV 215 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHH-HHH
Confidence 4678999999999999998777665543 3567888887776766666666666666543221 111 123
Q ss_pred HHHHHHHHh-hhcCCCHHHHHHHHHHHHHhhccCCchhhHH
Q 002596 261 RNLFEYMLQ-VNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (902)
Q Consensus 261 ~~i~~~~~~-~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 300 (902)
..++.-+.. ..+.++......++.+...++..+.....++
T Consensus 216 ~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 216 ALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333333332 3445566666677888888877644333333
No 391
>PHA01351 putative minor structural protein
Probab=35.81 E-value=5.5e+02 Score=29.44 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHhccccccccHHHHHHHHHHHHH
Q 002596 589 FTSIAQALGAGFTQFAQPVFQRCINIIQT 617 (902)
Q Consensus 589 l~~i~~~~g~~f~~~~~~i~~~l~~~l~~ 617 (902)
+|.+.+++|+....++..+-.-++..+..
T Consensus 212 ~g~i~k~~~e~~~d~lkdi~de~~tt~ke 240 (1070)
T PHA01351 212 FGEIIKAFAETSVDFLNEIRDELATTLKE 240 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555555555544443
No 392
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=35.11 E-value=7.4e+02 Score=28.36 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhh-hHHHHHHHHhhccCC
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP-HLSEIVAFLIPLLDD 444 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~d 444 (902)
++-..-...+..+....+...++.+=..+.+.+-+++ .-..+-+..+.+-+++....++-. |+..+. .+++.+..
T Consensus 243 ~lY~~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~---~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~-~Lik~lp~ 318 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIASLSPSAFPELERFLLENVLHPH---FLCSLLAMDVWCFLARYGTAELCAHHVNLLA-HLIKSLPS 318 (559)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-HHHHHcCC
Confidence 3445556666666666666677777666666666777 777888888877777765555543 444433 45555543
Q ss_pred CChHHHHHHHHHHHhhHHHHh
Q 002596 445 KFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~ 465 (902)
+.. ....-...++|+...+.
T Consensus 319 ~~~-~~~~L~~LL~Rl~~~m~ 338 (559)
T PF14868_consen 319 SSY-QLINLSILLRRLFFLMA 338 (559)
T ss_pred cch-hHhhHHHHHHHHHHhcC
Confidence 222 23335556777766554
No 393
>PF14961 BROMI: Broad-minded protein
Probab=34.09 E-value=1e+03 Score=29.78 Aligned_cols=133 Identities=19% Similarity=0.141 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCCh-hhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 002596 131 ELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (902)
Q Consensus 131 ~ll~~L~~~l~~~~~-~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (902)
+=+..+.+.+..+.| .+|..|+..|..+.. ..+.+ ...++.+-..|...|.|+++.+...+++.......
T Consensus 161 e~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~---SDVls------~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 161 EQLQLIADKLDPGQPKEVRLEALQILCSAPP---SDVLS------CESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCCh---hhccc------cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 334555555555555 789899888854322 21111 23567888889999999999999999999988877
Q ss_pred ccchhhH----HhHHHHHHHHHH-----------hhC--CCCHHHHHHHHHHHHHHHhhChh----hhhhhHHHHHHHHH
Q 002596 210 LMPSALF----VSMDQYLQGLFL-----------LSN--DPSAEVRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYML 268 (902)
Q Consensus 210 ~~~~~~~----~~~~~~l~~l~~-----------~~~--~~~~~vr~~~~~~l~~l~~~~~~----~~~~~l~~i~~~~~ 268 (902)
..|-.+. ..+-..++.-|. .++ .++..---..+..+..+-...|. +-..+++.+++..+
T Consensus 232 sSpl~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTL 311 (1296)
T PF14961_consen 232 SSPLNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTL 311 (1296)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHH
Confidence 6553322 112111211121 111 11111222345556666555554 33467888888877
Q ss_pred hhhc
Q 002596 269 QVNK 272 (902)
Q Consensus 269 ~~~~ 272 (902)
..+.
T Consensus 312 sLLs 315 (1296)
T PF14961_consen 312 SLLS 315 (1296)
T ss_pred HHhc
Confidence 7654
No 394
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=33.47 E-value=6.6e+02 Score=27.31 Aligned_cols=155 Identities=15% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHhhcCCChHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHH----Hhhhhhc-CChHHHHH
Q 002596 38 QQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSE----LLPCLGA-ADRHIRST 112 (902)
Q Consensus 38 ~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~----ll~~l~~-~~~~vr~~ 112 (902)
+.|=.+-...++...|+.++.+. +....+|.-|+-+|...+.. +.++++.+. ++..-+. ......+.
T Consensus 170 q~LCD~iR~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~a-------eN~d~va~~~~~~Il~lAK~~e~~e~aR~ 241 (832)
T KOG3678|consen 170 QGLCDAIRLDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILVA-------ENRDRVARIGLGVILNLAKEREPVELARS 241 (832)
T ss_pred HhhhhHhhccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHhh-------hhhhHHhhccchhhhhhhhhcCcHHHHHH
Confidence 33433434567778889988754 55667899999988766532 222222221 1111122 24445555
Q ss_pred HHHHHHHHHhhcCcCchH-----HHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcch-hhhHHHHH
Q 002596 113 VGTIVSVVVQLGGIAGWL-----ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLL 186 (902)
Q Consensus 113 ~a~~l~~i~~~~~~~~w~-----~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~l~ 186 (902)
.+.++..++++.. .... +.+..++-.+...+|.....+..+|+.++-........ +.+ +.+-..++
T Consensus 242 ~~~il~~mFKHSe-et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qr-------rmveKr~~EWLF 313 (832)
T KOG3678|consen 242 VAGILEHMFKHSE-ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQR-------RMVEKRAAEWLF 313 (832)
T ss_pred HHHHHHHHhhhhH-HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHH-------HHHHhhhhhhhh
Confidence 6678888887641 1111 22344444455555654444445666554433322110 011 12223344
Q ss_pred HHhcCCCHHHHHHHHHHHHHHh
Q 002596 187 QFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~ 208 (902)
.+..+.+.-.|..|+-+...++
T Consensus 314 ~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhh
Confidence 4455556667777766665554
No 395
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.35 E-value=5.3e+02 Score=25.85 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=29.1
Q ss_pred HHHHHHhhCCCC--HHHHHHHHHHHHHHHhhCh---hhhhhhHHHHHHH
Q 002596 223 LQGLFLLSNDPS--AEVRKLVCAAFNLLIEVRP---SFLEPHLRNLFEY 266 (902)
Q Consensus 223 l~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~---~~~~~~l~~i~~~ 266 (902)
++.+..++.+++ .-+|..+++++..++...+ +.+..|+..++..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344555555553 4589999999999987655 3455566666654
No 396
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=31.90 E-value=3.3e+02 Score=23.41 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=40.6
Q ss_pred HhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 002596 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (902)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~ 512 (902)
.+..|......++..+.|++.... +...++..+.+.+....+.-+....+.+..++.++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~--------------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS--------------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 455556666778888888775432 2345666666666655555677788888888888743
No 397
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=30.79 E-value=3.4e+02 Score=23.11 Aligned_cols=60 Identities=7% Similarity=0.086 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcccchHhH
Q 002596 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l 518 (902)
..+.+...+.||+... .+...++..+.+.+....+.-+..+.+.+..++.+++.....++
T Consensus 17 S~~~I~~lt~~a~~~~--------------~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~ 76 (114)
T cd03562 17 SQPSIQTLTKLAIENR--------------KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFF 76 (114)
T ss_pred cHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHH
Confidence 4455565565555432 34456777777777766677788999999999999865544433
No 398
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.81 E-value=6e+02 Score=25.73 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCC-CCCCCcchhhhHHHHHHHhcCCC-----HHHHHHH
Q 002596 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV-PGLAECPINIFLPRLLQFFQSPH-----TSLRKLS 200 (902)
Q Consensus 127 ~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~l~~~~-----~~vr~~a 200 (902)
+.|+.+-+-+.+.+.++.. -+.++..|..+...-...+-... .+++ -.+-..+|.++..+.++. +.++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll-~~~la~LP~ll~~~d~~~~i~~~~~~~~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLL-FLLLALLPRLLHAFDDPNPIQPDQECIEIA 136 (262)
T ss_pred CCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHH-HHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 6778888889998888764 35588888887775433322111 0110 123456788888888776 4444444
Q ss_pred HHHHHHHhc
Q 002596 201 LGSVNQFIM 209 (902)
Q Consensus 201 l~~l~~~~~ 209 (902)
..+..+.+
T Consensus 137 -~~La~~a~ 144 (262)
T PF14225_consen 137 -EALAQVAE 144 (262)
T ss_pred -HHHHHHHH
Confidence 55555553
No 399
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.28 E-value=1.1e+03 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhh
Q 002596 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 220 ~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 251 (902)
..++|.+..++-+++++.|..|...+..+...
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~ 150 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRP 150 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCC
Confidence 45577777777788999999999999988653
No 400
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=28.89 E-value=1.1e+03 Score=28.58 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHHHHHhcccchHhH
Q 002596 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLK-----RILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (902)
Q Consensus 444 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~-----~l~d~~~~v~~~a~~al~~l~~~~~~~~~p~l 518 (902)
+....||-.....+.++..... ..|-++++..++- ...|.+.+||..+..+|.+|++.|....---+
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr--------~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~l 512 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR--------QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSL 512 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh--------hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhH
Confidence 3445566555555555544332 2233344444321 12245678999999999999999965443344
Q ss_pred HHHHHHHHHH
Q 002596 519 EIILQHLMMA 528 (902)
Q Consensus 519 ~~i~~~l~~~ 528 (902)
-++++.+++.
T Consensus 513 ldi~EA~~~r 522 (1697)
T KOG3687|consen 513 LDIIEAVMAR 522 (1697)
T ss_pred HHHHHHHHhc
Confidence 4555555544
No 401
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.84 E-value=1.3e+03 Score=29.20 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred HHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 002596 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (902)
Q Consensus 434 i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~ 509 (902)
++..++...-..++.|....+.++.. .+... +...-.+..++...+-.+.|++..||..|...|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlae---v~~~~---~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAE---VFSER---EYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHH---HHHcC---CCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 55555555445566665555545443 33221 111223557888888888899999999999988876543
No 402
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=28.78 E-value=7.5e+02 Score=26.51 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHHhhh
Q 002596 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (902)
Q Consensus 428 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 467 (902)
..|+.++..++-+.+...++.......|++|.+..++.+.
T Consensus 64 ~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~l 103 (373)
T PF14911_consen 64 LEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSPL 103 (373)
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcchh
Confidence 3566667777777776678888888999999999888764
No 403
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=28.60 E-value=2.3e+02 Score=24.37 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=36.7
Q ss_pred hhHhhhHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHhhcCChh-hhhhHHHHHHHHHHHHhhhcCCccCcCh
Q 002596 722 VSVANNACWAIGELAVKARQ---EISPIVMTVVLCLVPILKHSEE-LNKSLIENSAITLGRLAWVCPELVSPHM 791 (902)
Q Consensus 722 ~~v~~~a~~alg~l~~~~~~---~~~~~~~~il~~l~~~l~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~l 791 (902)
.+-.+.|....-.++..-+. ++..+..+++..|+.+=+.-+. .-...|.+++.+ ++...|..+.|++
T Consensus 19 ~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alva---l~v~~P~~~~~~L 89 (114)
T PF10193_consen 19 YEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVA---LVVAAPEKVAPYL 89 (114)
T ss_dssp -S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHH---HHHHSGGGHHH-H
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHH---HHHHhhHHHHHHH
Confidence 34557777788888766555 7888888888888876443221 023455555444 4556677665543
No 404
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.13 E-value=6.2e+02 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHhcCCCCCccchhHhhhHHHHHHHHHHhhh---hhhhhHHHHHH
Q 002596 708 IAAKQLNTPKLKETVSVANNACWAIGELAVKAR---QEISPIVMTVV 751 (902)
Q Consensus 708 ~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~---~~~~~~~~~il 751 (902)
.+.+.+.+++. +.-+|.+|+.+++.++..++ +.+..|+..++
T Consensus 115 ~L~~li~~~~~--~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll 159 (249)
T PF06685_consen 115 PLKELIEDPDA--DEYVRMAAISALAFLVHEGPISREEVIQYFRELL 159 (249)
T ss_pred HHHHHHhCCcH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44445556544 45789999999999987765 33445555444
No 405
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=28.12 E-value=4.7e+02 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccc
Q 002596 498 AACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ 533 (902)
Q Consensus 498 ~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~ 533 (902)
.=+..+..+.+.++..+.||...+++.....|+...
T Consensus 86 tfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~ 121 (153)
T PF08146_consen 86 TFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFN 121 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335556677788889999999999999998887653
No 406
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=27.15 E-value=7.2e+02 Score=25.75 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHH
Q 002596 666 DMLLQCCMDDASDVRQSAFALLGDLA 691 (902)
Q Consensus 666 ~~l~~~~~~~~~~vr~~a~~~l~~l~ 691 (902)
..++..+.+++++||=.|+.++-.+.
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 34555667889999987777655443
No 407
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.80 E-value=7.5e+02 Score=25.86 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=80.6
Q ss_pred HHHHHhhccCCCCchHHHHHH---HHHHHHHHhcch--hhh--hhhHHHHHHHHhhccCCCChHHHHHHHHHHHhhHHHH
Q 002596 392 PVIQAKLSASGDEAWKDREAA---VLALGAIAEGCI--KGL--YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (902)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~~a---~~~l~~l~~~~~--~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 464 (902)
..+...+.+.++ -..|..+ +..|..++..-. +.+ ..-++.++....... .+|.|-..++-+++-++-..
T Consensus 286 ~tl~~~i~d~n~--~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 286 DTLLRCIDDSNE--QGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRS 361 (461)
T ss_pred HHHHHHHhhhch--hhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcC
Confidence 334455555332 5556444 444555553211 111 133455666666654 45677788888877776544
Q ss_pred hhhhcCCcchhhHH-HHHHHHHHHhcC-C-CHHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHhccchhhHHHHH
Q 002596 465 VQDIGHQNGREQFE-KVLMGLLKRILD-T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541 (902)
Q Consensus 465 ~~~~~~~~~~~~~~-~il~~l~~~l~d-~-~~~v~~~a~~al~~l~~~~~~~~~p~l~~i~~~l~~~l~~~~~~~~~~~~ 541 (902)
+++ ....++ ..-...++.|+- | ...||..||+.+.+++......-.+.+..=++.|+..-....+.....+-
T Consensus 362 pdh-----sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~ak 436 (461)
T KOG4199|consen 362 PDH-----SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAK 436 (461)
T ss_pred cch-----HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHH
Confidence 322 222222 233344566653 2 46799999999999998876666666666666666655544444433444
Q ss_pred HHHH
Q 002596 542 DAIG 545 (902)
Q Consensus 542 ~al~ 545 (902)
.++.
T Consensus 437 aALR 440 (461)
T KOG4199|consen 437 AALR 440 (461)
T ss_pred HHHH
Confidence 4444
No 408
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=26.24 E-value=1e+03 Score=27.27 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=44.5
Q ss_pred HhhhHHHHHHHHhhhHHhhhccchHHHHHHHHhcCCChHHHHHHHHHHHHHHhhch
Q 002596 640 CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCP 695 (902)
Q Consensus 640 al~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 695 (902)
.++++...+++++-.+.+-++...++.+|.++.-+.++.++++|...|..++...+
T Consensus 448 ~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 448 QLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred hhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 45778888888776665554445688888888888999999999999999998764
No 409
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=25.19 E-value=6.2e+02 Score=27.33 Aligned_cols=120 Identities=12% Similarity=0.153 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCC---ChHHHHHHHHHHHHHHhhchHhhHHhHH-HHHHHHHHhcCCCCCccchhHhhhHHHHHHHHHHhh
Q 002596 664 LRDMLLQCCMDD---ASDVRQSAFALLGDLARVCPVHLQARLS-DFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKA 739 (902)
Q Consensus 664 l~~~l~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~ 739 (902)
+...|...+++. .+.+-..|+.++.+++..-|..+.-..+ .+.+.++..+.......+.++-...-.++|.++.+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 444444444442 4567777888888888776644432211 233333433331111002355455556777776544
Q ss_pred h--hhhhhHHHHHHHHHHHhhcCChhh----hhhHHHHHHHHHHHHhhhcCC
Q 002596 740 R--QEISPIVMTVVLCLVPILKHSEEL----NKSLIENSAITLGRLAWVCPE 785 (902)
Q Consensus 740 ~--~~~~~~~~~il~~l~~~l~~~~~~----~~~~~~~~~~~l~~l~~~~~~ 785 (902)
. +.|+.. ..++.+..++.+++.. ..+...+...++--|++++|.
T Consensus 187 ~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 187 RGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred HHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 2 223332 5567777888776532 112223344455667777775
No 410
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=24.33 E-value=2e+02 Score=26.63 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCcCch-----HHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhc
Q 002596 114 GTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (902)
Q Consensus 114 a~~l~~i~~~~~~~~w-----~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~ 165 (902)
+.++..+....-++.| ..++|.+..++.|........|+..|..+...+.+.
T Consensus 47 vD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 47 VDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666633333445 689999999999999999999999999888766543
No 411
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=24.26 E-value=6.4e+02 Score=24.57 Aligned_cols=75 Identities=8% Similarity=-0.012 Sum_probs=53.5
Q ss_pred cCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 002596 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (902)
Q Consensus 126 ~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~ 205 (902)
...||++++......++.+.-.|..++.....-+..- .....+++.+-..+.|...-|+.+.--+|.
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~-------------~~~~~if~i~E~~l~d~e~fV~KAigWaLr 179 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT-------------LDLLEIFEIIELLLGDKEFFVQKAIGWALR 179 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc-------------cchhHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4689999999977677767666666555443333321 122468888888999999999999989999
Q ss_pred HHhcccch
Q 002596 206 QFIMLMPS 213 (902)
Q Consensus 206 ~~~~~~~~ 213 (902)
.+..+.++
T Consensus 180 q~~k~~~e 187 (222)
T COG4912 180 QIGKHSNE 187 (222)
T ss_pred HHHhhchH
Confidence 98875443
No 412
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=23.88 E-value=2.6e+02 Score=23.45 Aligned_cols=56 Identities=11% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcchhhhhhhHH--HHHHHHhhc--cCCCChHHHHHHHHHHHhhHHHHh
Q 002596 409 REAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPL--LDDKFPLIRSISCWTLSRFSKFIV 465 (902)
Q Consensus 409 r~~a~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~--l~d~~~~vr~~a~~~l~~~~~~~~ 465 (902)
|...+..++.++..+.. ....+- .-+|.++.. +++.+|.+|.-|.+|+-.+.+.-.
T Consensus 3 K~~lvrlianl~~~~~~-~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE-VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44556677777765542 111111 125555554 467899999999999999987543
No 413
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.51 E-value=3.4e+02 Score=21.90 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=25.7
Q ss_pred ChhhHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhc
Q 002596 10 QEQGFNEICRLLEQQISPSST---ADKSQIWQQLQQYSQ 45 (902)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~---~~r~~a~~~L~~~~~ 45 (902)
+++.+.+..++|....+ |+. ++|+.|++....+.+
T Consensus 11 ~~e~i~q~~~lL~~Ii~-DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 11 SEEKINQVMQLLDEIIQ-DTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hHHHHHHHHHHHHHHHc-cccccHHHHHHHHHHHHHHhC
Confidence 56778888888888543 332 389999998888765
No 414
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=23.41 E-value=5.7e+02 Score=23.30 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHhhhccCCHhHHHHHHHHHhhhhhcC-----ChHHHHHHHHHHHHHHhhcCcCchHHHH-----HHHHHHhccCChh
Q 002596 77 NNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLELL-----QALVTCLDSNDIN 146 (902)
Q Consensus 77 ~~i~~~w~~l~~~~~~~i~~~ll~~l~~~-----~~~vr~~~a~~l~~i~~~~~~~~w~~ll-----~~L~~~l~~~~~~ 146 (902)
..+-+.|..-..+.++.+.+..++-+-+. ...+-...-.++..+.+........+++ |.|+..++..++.
T Consensus 55 ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL~r~L~~~n~~ 134 (152)
T PF12422_consen 55 EILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPILWRALQAANAK 134 (152)
T ss_pred HHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCCcc
Confidence 33446787776777777777777755432 2233333334555555443222333433 7788999999999
Q ss_pred hhhHHHHHHHHH
Q 002596 147 HMEGAMDALSKI 158 (902)
Q Consensus 147 ~r~~al~~L~~l 158 (902)
+|..|..++...
T Consensus 135 Vr~na~~l~~~a 146 (152)
T PF12422_consen 135 VRSNAAALFLDA 146 (152)
T ss_pred hhccHHHHHHHH
Confidence 999888777543
No 415
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=23.37 E-value=3.2e+02 Score=26.51 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=47.8
Q ss_pred hHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhchHhhHHhH--HHHHHHHHHhcCCCCCccchhHhhhHHHHHHHHH
Q 002596 663 NLRDMLLQCCMD-DASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLNTPKLKETVSVANNACWAIGELA 736 (902)
Q Consensus 663 ~l~~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~v~~~a~~alg~l~ 736 (902)
.+.|++...-++ +-+..|-+++++||.+++...+.+..++ ..++|.+.+.++.. ..--+..|+.-++.+.
T Consensus 145 flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g----SElSktvaifI~qkil 217 (315)
T COG5209 145 FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG----SELSKTVAIFIFQKIL 217 (315)
T ss_pred eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh----hHHHHHHHHHHHHHHh
Confidence 356666544333 3456788999999999999888777766 37889888887665 2344555666666553
No 416
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=23.25 E-value=3.9e+02 Score=30.80 Aligned_cols=149 Identities=14% Similarity=0.092 Sum_probs=81.8
Q ss_pred HHHHHHHhh----hhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHH---HHHHH-----hcc------CChhhhhHHHH
Q 002596 92 QYIKSELLP----CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQ---ALVTC-----LDS------NDINHMEGAMD 153 (902)
Q Consensus 92 ~~i~~~ll~----~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~---~L~~~-----l~~------~~~~~r~~al~ 153 (902)
..+++.+++ .+++.+..+|-.+|.-++.+++..+-..-..++. ...++ ++. .++.+.++++.
T Consensus 241 h~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~ 320 (993)
T COG5234 241 HIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAIL 320 (993)
T ss_pred hHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHH
Confidence 344444444 4455688899999999999988763222222332 22222 111 23456666666
Q ss_pred HHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHH
Q 002596 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQG 225 (902)
Q Consensus 154 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~ 225 (902)
.++ ++...+-.+.. .-+.|.+..+++- +...+|..++-.+..+...-.....+.++..+-+
T Consensus 321 ~~a-la~~~~id~~d----------~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~h 389 (993)
T COG5234 321 FFA-LAGAGLIDYSD----------CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIH 389 (993)
T ss_pred HHH-Hhhccccchhh----------hhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHH
Confidence 665 33322111100 1144555555532 2456888887777776654333333333333322
Q ss_pred -HHH-hhCCCCHHHHHHHHHHHHHHHhh
Q 002596 226 -LFL-LSNDPSAEVRKLVCAAFNLLIEV 251 (902)
Q Consensus 226 -l~~-~~~~~~~~vr~~~~~~l~~l~~~ 251 (902)
+++ .+-|++-.+|..+..++.+++..
T Consensus 390 ll~~~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 390 LLLQTALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred HHHhhhhcCchhhhhhHHHHHHHHHhcc
Confidence 222 45588889999999999887765
No 417
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=22.55 E-value=1.9e+02 Score=25.28 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=36.5
Q ss_pred hhHHHHhhHhhccccc-CcHHHHHHHHHHHHHHHhhcChhhHHHHHhcCCHHHHH
Q 002596 831 SSLVFMCRAIASWHEI-RSEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKD 884 (902)
Q Consensus 831 ~~l~~i~~~i~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 884 (902)
-+...|+.-++..... +..+-...+.-++..++...+++.++.+.++||++++.
T Consensus 69 ~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l~~~v~~ge~~~v~~~LP~~~~~ 123 (125)
T PF10025_consen 69 FDLDEFLARVAERLGGADEDDAERLARAVFAALREAVSEGEFEDVRSQLPKDLRE 123 (125)
T ss_dssp -SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHHHHHS-HHHHHHHHHTS-HHHHT
T ss_pred CCHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Confidence 3555666666663332 22256777888899999999878899999999998763
No 418
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.43 E-value=2.7e+02 Score=26.29 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhh--HHHHHHHHhhccCC
Q 002596 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH--LSEIVAFLIPLLDD 444 (902)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d 444 (902)
+|.....-+..+...-|-..+-.++..+...-... .........++.|+-.+...-. ++... -+..+..+...+.+
T Consensus 92 Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~-~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 92 LRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS-EEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC-TTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T
T ss_pred hccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc-chhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC
Confidence 44444444555544434333333333332222111 0115667778888888876432 12111 24467888899999
Q ss_pred CChHHHHHHHHHHHhhH
Q 002596 445 KFPLIRSISCWTLSRFS 461 (902)
Q Consensus 445 ~~~~vr~~a~~~l~~~~ 461 (902)
+++.+|..++..|+.++
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887664
No 419
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=22.28 E-value=3.2e+02 Score=35.23 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhcccc-hhhHHhHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHH-HhhChhhhhhhHHHHHHHHHhh
Q 002596 194 TSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLL-IEVRPSFLEPHLRNLFEYMLQV 270 (902)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~-~~~~~vr~~~~~~l~~l-~~~~~~~~~~~l~~i~~~~~~~ 270 (902)
.+-|...++=+.-++..-| +.+..+++.+.+.+...+. ++++.+|.+++-++..+ ....|+++.+.++-++.-+.+.
T Consensus 1501 ~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~v 1580 (1749)
T KOG3613|consen 1501 LEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQV 1580 (1749)
T ss_pred HHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHH
Confidence 4556666666666655444 4566788888999998887 77889999999988654 5677888888888776655544
No 420
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=21.75 E-value=1.3e+03 Score=28.36 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhhchhc-cccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHH
Q 002596 149 EGAMDALSKICEDIPQV-LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (902)
Q Consensus 149 ~~al~~L~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (902)
.-.+.+...|.+.++.. +. ..++...+-++.+....+..||..-+..+...+-.+|..+.+.+..++-.++
T Consensus 81 ~KTLEvY~yIFe~Ig~eTL~--------~e~n~w~~Gl~pf~~~~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLL 152 (1618)
T COG5221 81 NKTLEVYSYIFERIGRETLL--------KEFNFWTLGLFPFSAHCSILVVSSFIDLIERYIVPLGKDVRSYCTSILISLL 152 (1618)
T ss_pred hhhhhHHHHHHHHHhHHHHH--------hhhhhhhcchhhhhhhhhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhC
Confidence 34555555555554432 11 1234455666777777788889888888888887777777777766666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHh
Q 002596 228 LLSNDPSAEVRKLVCAAFNLLIE 250 (902)
Q Consensus 228 ~~~~~~~~~vr~~~~~~l~~l~~ 250 (902)
..+.+.+.+.-......+..+.+
T Consensus 153 pg~e~es~e~~~l~~hLi~tl~k 175 (1618)
T COG5221 153 PGMEFESGEYYSLRAHLIITLFK 175 (1618)
T ss_pred CCccccccchHHHHHHHHHHHHH
Confidence 55554444443434444444443
No 421
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=21.49 E-value=1.2e+03 Score=26.28 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHhhhcCCccCcChHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-HcCchhhhhhHHHHhhHh
Q 002596 776 LGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMV-KANPSGALSSLVFMCRAI 840 (902)
Q Consensus 776 l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li-~~~p~~~~~~l~~i~~~i 840 (902)
+.......|+.+.|+++.+++.+... +.+++ .+...+..+| +..+..+.+-+|.++-.+
T Consensus 186 lS~Vye~~P~~i~PhlP~l~~lL~q~-----~p~~~-~ll~~l~~LI~Qk~~evL~~ciP~L~g~l 245 (851)
T KOG3723|consen 186 LSAVYEKQPQPINPHLPELLALLSQL-----EPEQY-HLLRLLHVLIKQKQLEVLQKCIPFLIGHL 245 (851)
T ss_pred HHHHHhcCCCccCcccHHHHHHhcCC-----CHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 34455567888888887766655422 22333 3444444444 445555555666655544
No 422
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=1.3e+03 Score=26.70 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=40.9
Q ss_pred HHHHHHHHhccCChhhhhHHHHHHHHHHhhchhccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002596 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (902)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~ 207 (902)
-+..|-+.+-++++.++.+|+..++........ ..+..+-.|...+++++..+|..|+--|+-.
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~n------------e~dpalALLsdyv~~~~s~~ri~aIlGLgla 479 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFN------------ECDPALALLSDYLQSSSSIHRIGAILGLGLA 479 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccc------------ccCHHHHHHHHhccCCCceeehHHhhhhHHh
Confidence 456666666666666777777666443322211 1245566677788888999999887766654
No 423
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.14 E-value=5.2e+02 Score=21.95 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCcchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHHHH-HHHHhhccCCCChHH
Q 002596 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI-VAFLIPLLDDKFPLI 449 (902)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i-~~~l~~~l~d~~~~v 449 (902)
....+..++.... ..-+.++..+.+.+.... +..|-.++..+..++..+.......+... .+.+.......++.+
T Consensus 20 ~I~~lt~~a~~~~-~~a~~iv~~i~~~i~~~~---~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 95 (114)
T cd03562 20 SIQTLTKLAIENR-KHAKEIVEIIEKHIKKCP---PEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKT 95 (114)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---cccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444444444432 234567777777887777 78899999999999988865544333332 333333334556667
Q ss_pred HHHHHHHHH
Q 002596 450 RSISCWTLS 458 (902)
Q Consensus 450 r~~a~~~l~ 458 (902)
|......+.
T Consensus 96 r~kl~rl~~ 104 (114)
T cd03562 96 RKKLERLLN 104 (114)
T ss_pred HHHHHHHHH
Confidence 765544443
No 424
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=2.9e+02 Score=30.69 Aligned_cols=133 Identities=12% Similarity=0.031 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhcC----cchhhhhHHHHHHhhccCCCCchHHHHHHHHHHHHHHhcchhhhhhhHH-HHHHHHhhccC
Q 002596 369 KCSAAALDVLSNVFG----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLD 443 (902)
Q Consensus 369 ~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~ 443 (902)
.++..+|..+++.+. .-.-..+.+.+.+.+.+++ -.....+...+....-....--+.++. .++..+.+.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe---imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE---IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc---ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 456777777776652 1111244556666777665 444333333333222111110011222 25555666666
Q ss_pred CCChHHHHHHHHHHHhhHHHHhhhhcCCcchhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 002596 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 444 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~v~~~a~~al~~l~~ 508 (902)
+.+..+|..+.|.+-.+.-.+.+. ..-+.+ .-=+..++....|+...|+..+...+.+|.-
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~----ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKN----EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcch----hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 666788888899887665544321 111122 2235566777889999999999999999864
No 425
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.90 E-value=3.1e+02 Score=25.79 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=38.7
Q ss_pred ChhhhhHHHHHHHHHHhhchh--ccccCCCCCCCcchhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 002596 144 DINHMEGAMDALSKICEDIPQ--VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (902)
Q Consensus 144 ~~~~r~~al~~L~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (902)
+......++.|+..++..-.. .+-. -+..+..|...+.+++..+|..++..|..+.
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~---------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS---------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC---------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc---------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345667788888887764321 1111 1567888999999999999999999998764
No 426
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=20.75 E-value=6e+02 Score=26.54 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcchhhhhHHHHHHhhccC---CCCchHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH------------HhhccC----
Q 002596 383 GDEILPTLMPVIQAKLSAS---GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF------------LIPLLD---- 443 (902)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~------------l~~~l~---- 443 (902)
+....|.+.-++.-++... . ...|.||+.++.+...+..+.-..++..++|. ++..|-
T Consensus 29 ~~~~~pvi~~LL~~~L~~~~~~~---f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~ 105 (312)
T PF04869_consen 29 SDPPVPVIDALLNLMLNENSVQP---FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDS 105 (312)
T ss_dssp SSS-EEHHHHHHHHHT-TT--S----HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT----
T ss_pred CCCCccHHHHHHHHHhccccccc---hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhc
Q ss_pred --CCChHHHHHHHHHHHhhHHHHhhh------------hcCCcchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 002596 444 --DKFPLIRSISCWTLSRFSKFIVQD------------IGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEE 508 (902)
Q Consensus 444 --d~~~~vr~~a~~~l~~~~~~~~~~------------~~~~~~~~~~~~il~~l~~~l~-d~~~~v~~~a~~al~~l~~ 508 (902)
+.+|.--+-|+.++..+...-.+. ...+.....++.+...+...+. +.+++++..-...|...+-
T Consensus 106 ~~~~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~ 185 (312)
T PF04869_consen 106 DLSLDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF 185 (312)
T ss_dssp --SS-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh
Q ss_pred HhcccchHhHHH--HHHHHHHHHhccchhhHHHHHHHHHHHH
Q 002596 509 EAAEELAPRLEI--ILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (902)
Q Consensus 509 ~~~~~~~p~l~~--i~~~l~~~l~~~~~~~~~~~~~al~~l~ 548 (902)
+++..+..++.. .++.|+............ ...+.++.
T Consensus 186 e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~--VqGL~A~L 225 (312)
T PF04869_consen 186 ECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVL--VQGLCAFL 225 (312)
T ss_dssp T-HHHHHHHHCSTTHHHHHHHHHS--TCCCHH--HHHHHHHH
T ss_pred CCHHHHHHHHcCcchHHHHHHHhhcCCCCcch--HHHHHHHH
No 427
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=20.65 E-value=1.2e+03 Score=26.15 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCchhhhhhHHHHhhHhhcccccCcHHHHHHHHHHHHHHHhhcC
Q 002596 814 AFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLR 867 (902)
Q Consensus 814 ~~~~l~~li~~~p~~~~~~l~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~ 867 (902)
..+.+..++...|+.+.+|+|.+.--+.+.. ++....+.++...+++.-.
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~----p~~~~ll~~l~~LI~Qk~~ 231 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLE----PEQYHLLRLLHVLIKQKQL 231 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCC----HHHHHHHHHHHHHHHhccH
Confidence 4455666666789999999999988776642 2234444444444454333
No 428
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=20.60 E-value=1.4e+03 Score=26.71 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=71.3
Q ss_pred CChhhHHH-HHHHHHH--hcCCCCHHHHHHHHHHHHHh-hc-CCChHH-HHHHHhhccCCCCHHHHHHH-HHHHHHHHHh
Q 002596 9 PQEQGFNE-ICRLLEQ--QISPSSTADKSQIWQQLQQY-SQ-FPDFNN-YLAFILARAEGKSVEIRQAA-GLLLKNNLRT 81 (902)
Q Consensus 9 ~~~~~~~~-~~~~l~~--~~s~~~~~~r~~a~~~L~~~-~~-~p~~~~-~l~~il~~~~~~~~~~R~~a-~~~Lk~~i~~ 81 (902)
.+++ ++. +.+++-+ ..+|.-. +|+.|.+.|.+. .. .|..+. .++.++ | .-...|... .-.+|+.+..
T Consensus 379 ~~~~-lqt~L~hll~~~alFDpel~-vRr~a~Aal~E~iGR~~s~a~g~~lIslI--N--~~sv~r~s~csg~~~r~~~~ 452 (993)
T COG5234 379 AIEG-LQTNLIHLLLQTALFDPELN-VRRAATAALFEVIGRHASIADGLSLISLI--N--YVSVTRISNCSGDLCRKVAH 452 (993)
T ss_pred cchh-HHHHHHHHHHhhhhcCchhh-hhhHHHHHHHHHhccCCCcccchhhhhhc--c--ceecchhhhcchHHHHHhcC
Confidence 3444 443 4444443 4567666 999999999875 33 343332 233322 1 111122211 1223333322
Q ss_pred hhccCCHhHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHhccCChhhhhHHHHHHHHHHhh
Q 002596 82 AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (902)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~a~~l~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~ 161 (902)
.++...-+ +-.++-|+.-|.+-++.++...+-.+..+.+. +...|-+++.+...+.++ . ..+..++..+++.
T Consensus 453 -~~k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~--~~~~p~yl~~Il~k~~sd---f-i~~~~il~~~~k~ 524 (993)
T COG5234 453 -FPKFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY--PKELPIYLPPILDKLSSD---F-IFGYTILASIIKG 524 (993)
T ss_pred -ccccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhcC--cccCchhhhHHhhhCchh---h-hcchhhHHHHHHH
Confidence 22211111 23344477777777888888888888888653 445555666555544432 1 2334445555555
Q ss_pred c
Q 002596 162 I 162 (902)
Q Consensus 162 ~ 162 (902)
+
T Consensus 525 F 525 (993)
T COG5234 525 F 525 (993)
T ss_pred h
Confidence 4
No 429
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=20.58 E-value=5e+02 Score=26.92 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=25.0
Q ss_pred hHHHHHHHHhc-CC--ChHHHHHHHHHHHHHHhhchHhh
Q 002596 663 NLRDMLLQCCM-DD--ASDVRQSAFALLGDLARVCPVHL 698 (902)
Q Consensus 663 ~l~~~l~~~~~-~~--~~~vr~~a~~~l~~l~~~~~~~~ 698 (902)
.+++.+...+- +. ..++.|..+.++|++.+.....+
T Consensus 141 GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 141 GLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAF 179 (303)
T ss_pred chHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHH
Confidence 35555554443 32 35799999999999999886544
No 430
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=9.1e+02 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhhcCCh
Q 002596 726 NNACWAIGELAVKAR--QEISPIVMTVVLCLVPILKHSE 762 (902)
Q Consensus 726 ~~a~~alg~l~~~~~--~~~~~~~~~il~~l~~~l~~~~ 762 (902)
..|-..+-.+..+.+ +++.+.++.+.+.+-.+|+...
T Consensus 381 p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~ 419 (650)
T KOG2188|consen 381 PIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGN 419 (650)
T ss_pred ccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCC
Confidence 344455666666655 4466777777777777776553
No 431
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=20.25 E-value=1.6e+02 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHHHhccCChhhhhHHHHHHHHHHhhc
Q 002596 132 LLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (902)
Q Consensus 132 ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~ 162 (902)
-++.+..+..|..+..|..|+.+|+.|+...
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999999988754
Done!