Query 002596
Match_columns 902
No_of_seqs 341 out of 3008
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 16:29:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002596.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1314-1318//hhsearch_pdb/002596hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 841.3 92.6 846 4-891 2-852 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 537.5 76.7 776 15-863 4-856 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 521.1 73.9 776 16-865 2-872 (876)
4 1wa5_C Importin alpha RE-expor 1.0 1 1 518.8 68.4 809 13-890 3-957 (960)
5 2x1g_F Cadmus; transport prote 1.0 1 1 429.5 57.0 700 13-782 5-859 (971)
6 3m1i_C Exportin-1; heat repeat 1.0 1 1 428.9 67.4 727 10-781 11-929 (1049)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 423.8 67.7 754 12-837 21-908 (963)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 392.9 66.4 828 15-894 6-1218(1230)
9 4hat_C Exportin-1; heat repeat 1.0 1 1 385.3 65.8 568 13-618 14-700 (1023)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 375.9 72.2 723 48-867 10-787 (852)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=841.29 Aligned_cols=846 Identities=46% Similarity=0.847 Sum_probs=770.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98888896549999999997119999888999999999753499918799998520478898999999999999777521
Q 002596 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (902)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w 83 (902)
-|+|+|++++++++.++|++++|||++ .|++|+++|++++++|+|+.++..++.+..+.+..+|++|++.|||.+.++|
T Consensus 2 ~~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w 80 (852)
T 4fdd_A 2 EYEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 898899842399999999987394989-9999999999987099889999999856688986799999999999898744
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf 55997589999998855531699679999999999998503769558999999997226993566399999999983061
Q 002596 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
..++++.+..||+.+++++.+++..+|+.++.+++.|++.++++.||++++.+.+.++++++.+|++++.+|+.+++..+
T Consensus 81 ~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp GGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77999999999999999874998999999999999999864813568999999998709998999999999999999857
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 10035799988761352499999870499999999999999998501634669959999999998507998789999999
Q 002596 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (902)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~a~~ 243 (902)
..+..+.. ...++.++|.++++++++++.||..|++++..++...+..+..+++.+++.++..++++++.+|..++.
T Consensus 161 ~~~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~ 237 (852)
T 4fdd_A 161 EILDSDVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237 (852)
T ss_dssp THHHHCSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHCHHHH---CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 87563431---332999999999985679789999999999999864638799889999999998717997789999999
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999944712155659999999986406998889999988999953057741237765433699998311478133555
Q 002596 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (902)
Q Consensus 244 ~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~ 323 (902)
+|..+++..++.+.+|++.+++.++..+.+.++++|..|++||..+++.+..++.++|+++.++|.++..|.+.++|++|
T Consensus 238 ~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~ 317 (852)
T 4fdd_A 238 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIIL 317 (852)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999985779899889999999998706996899999999999986036579887888988999999875786767998
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 32101488988777887432224678999999987300000328999999999999660965055168999986503898
Q 002596 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (902)
Q Consensus 324 ~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~~~~ 403 (902)
++.+++ +|+++||....|++|+++..+++.++...|+.+++.+++.+.+.+.+++
T Consensus 318 ~~~d~~------------------------ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~- 372 (852)
T 4fdd_A 318 LKGDVE------------------------GGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE- 372 (852)
T ss_dssp HHC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS-
T ss_pred HCCCCC------------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-
T ss_conf 669844------------------------3222456401116999999999999874618789999999999855998-
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 73577899999999987300452552199999999610599985799999999986498876520687513349999999
Q 002596 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (902)
Q Consensus 404 ~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~ 483 (902)
|+.|++|++++|.+++++.+.+.++++.+++.+++.++|+++.||.+++|++|++++++... ....++..+++.
T Consensus 373 --~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~ 446 (852)
T 4fdd_A 373 --WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTE 446 (852)
T ss_dssp --HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHH
T ss_conf --89999999999999863568899879999999998717998899999999999999886110----478999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99996299989999999999999998134523769999999999870000356999999999999983556896113642
Q 002596 484 LLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDI 563 (902)
Q Consensus 484 l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~ 563 (902)
++..+.|+++.||..|+++++++++.++..+.||++.+++.+...++.++.+....++++++.++..+|..+..++|++.
T Consensus 447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~ 526 (852)
T 4fdd_A 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM 526 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99998589888999999999999997367667679999999999998837479999999999999974243136789999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH----HHCCCCCCCCCCHHHHHH
Q ss_conf 1499999996099998651459999999999834244453088999999999999998----533663579773258997
Q 002596 564 LMPPLIAKWQQLPNSDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCINIIQTQQLA----KVDSVAAGAQYDKEFVVC 639 (902)
Q Consensus 564 l~~~l~~~l~~~~~~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~e~d~~~~~~ 639 (902)
+||.+++.|....++++.+..+++|++.++..+|..|.||++.+++.+++.+...... ..+++. .+++|++++.+
T Consensus 527 l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~-~~~~d~~~~~~ 605 (852)
T 4fdd_A 527 LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ-YEAPDKDFMIV 605 (852)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SCCCCTHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHH
T ss_conf 88999999873330469999999999999999748679889999999999999999999875338866-68876119999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86668999998844188630200399999998269995899999999979986565766873999999999841999986
Q 002596 640 CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLK 719 (902)
Q Consensus 640 al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 719 (902)
++++++.+++.+|.++.+++..+.+++.+..+++++.+++|++++.+++++++.++..+.+|++.++|.+.+.+..+
T Consensus 606 ~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~--- 682 (852)
T 4fdd_A 606 ALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE--- 682 (852)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 99999789998747699883677189999998389984499999999999999816888987999999999876942---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 63447545999999999860001226899999999996038801223288889999988863457865767678899999
Q 002596 720 ETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHFMQPWC 799 (902)
Q Consensus 720 ~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~ 799 (902)
...+|.+|+|++|.++.+.+.++.||+..+++.|.+++++++ .+..+++|++.++||++..+|+.+.|+++++++.||
T Consensus 683 -~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~-~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~ 760 (852)
T 4fdd_A 683 -FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 760 (852)
T ss_dssp -SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHH
T ss_conf -068999999999999997117678789999999999857998-872077889999999998688976755899999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 76018999078899999999999709312454179985583113435817799999999999993128355999982199
Q 002596 800 IALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQCMSALE 879 (902)
Q Consensus 800 ~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 879 (902)
..|+..+|.+|+..++++||.+++.||+++.+++..||+++++|.++ .+|+++++.+++.++|+++|+++|++++++||
T Consensus 761 ~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 839 (852)
T 4fdd_A 761 TSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP-KDDLRDMFCKILHGFKNQVGDENWRRFSDQFP 839 (852)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 98653666079999999999999869186888899999998706899-78999999999999987677201999987299
Q ss_pred HHHHHHHHH-CCC
Q ss_conf 889999942-022
Q 002596 880 PPVKDKLSK-YQV 891 (902)
Q Consensus 880 ~~~~~~l~~-y~~ 891 (902)
|+.+++|+. ||+
T Consensus 840 ~~~~~~l~~~~~~ 852 (852)
T 4fdd_A 840 LPLKERLAAFYGV 852 (852)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999987096
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=537.47 Aligned_cols=776 Identities=16% Similarity=0.234 Sum_probs=640.2
Q ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---------
Q ss_conf 9999999971-1999988899999999975349--991879999852047889899999999999977752---------
Q 002596 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--------- 82 (902)
Q Consensus 15 ~~~~~~l~~~-~s~~~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~--------- 82 (902)
+++.++|..+ .|||++ .|++|+++|+++++. |+|+.++.+++.+ .+.+.++|++|++.|||.+.++
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 79999999742693979-999999999999851999999999999837-8998679999999987022575748789999
Q ss_pred --HCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Q ss_conf --155-99758999999885553169967999999999999850376-95589999999972269-93566399999999
Q 002596 83 --YKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (902)
Q Consensus 83 --w~~-l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~-~~w~~ll~~L~~~l~~~-~~~~r~~al~~L~~ 157 (902)
|.. ++++.+..||+.+++.+.+++..+|+.++.+++.|++.+++ +.||++++.|.+.+.++ ++.+|++++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 76766299999999999999987799637999999999999984676455499999999987268978999999999999
Q ss_pred HHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHCCC
Q ss_conf 98306110035799988761352499999870499--9999999999999985016346699--5999999999850799
Q 002596 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (902)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ 233 (902)
+++....... .+....+.+++.+.+.+.++ +..||..+++++..++.+....+.. ..+.+++.+...+.++
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9972784356-----78988999999999841579998789999999999999999987067668999999999986599
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---------------CHH
Q ss_conf 8789999999999999447121556599-999999864069988899999889999530577---------------412
Q 002596 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (902)
Q Consensus 234 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~---------------~~~ 297 (902)
++.+|..++.+|..+.+..++.+.+++. .+++.+...+.+.++++|..++++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88999999999999999988999998899999999998737727899999999999998788643332103577325699
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 37765433699998311478133555321014889887778874322246789999999873000003289999999999
Q 002596 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (902)
Q Consensus 298 ~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~ 377 (902)
..+++++.++|.++..|...++ | + ++++|++|.++..+++.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d-~---~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------D-P---EDDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C-----CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-----------------------------------C-C---CCCCCCHHHHHHHHHHH
T ss_conf 9999998899999999870665-----------------------------------3-0---12468689999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99660965055168999986503898735778999999999873004-52552199999999610599985799999999
Q 002596 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (902)
Q Consensus 378 l~~~~~~~~~~~il~~l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~ 456 (902)
++..+|+.+++.+++.+.+.+++.+ |+.|++|+.++|.+++++. +.+.++++.+++.+++.++|+++.||.+++|+
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9987408689999999998757997---2699999999999985998788899899999999988289959999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9864988765206875133499999999999629998999999999999999813----452376999999999987000
Q 002596 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (902)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~----~~l~p~l~~i~~~l~~~l~~~ 532 (902)
+|+++.++.... ....++..+++.++..+.|+ ++||..||+++..+++.++ ..+.||++.+++.+...++..
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998735404---87888999999999976447-28999999999999986231354246899999999999998575
Q ss_pred C--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC--------CCC----CCCH-HHHHHHHHHHHHHHC
Q ss_conf 0--356999999999999983556896113642149999999609--------999----8651-459999999999834
Q 002596 533 Q--RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNS----DKDL-FPLLECFTSIAQALG 597 (902)
Q Consensus 533 ~--~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~----~~~~-~~~l~~l~~i~~~~g 597 (902)
+ ..++..++++++.++...+..+. +|+..++|.++..|... .+. ...+ ..++++++.++..+|
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVA--ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP 588 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86158999999999999997626569--9999999999999998875320138855677799999999999999999855
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 2444530889999999999999985336635797732-589978666899999884418863020039999999826999
Q 002596 598 AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDK-EFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMDDA 676 (902)
Q Consensus 598 ~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~-~~~~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 676 (902)
..+.||++.+++.++..++.. +. .++..++.+++.++..+|..+.+|++. +++.+..++.+++
T Consensus 589 ~~~~~~~~~l~~~l~~~l~~~--------------~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~ 652 (861)
T 2bpt_A 589 SSVEPVADMLMGLFFRLLEKK--------------DSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVD 652 (861)
T ss_dssp GGTGGGHHHHHHHHHHHHHST--------------TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCC
T ss_conf 634789999999999997467--------------887579999999999999976609999999--9999998865566
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999799865657668739999999998419999866344754599999999986000122689999999999
Q 002596 677 SDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVP 756 (902)
Q Consensus 677 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~ 756 (902)
+.+|..++.+++++++.++..+.||++.+++.+.+.+.+++. +..+|..++.++|.++...++.|.||++.+++.+.+
T Consensus 653 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 653 SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNA--RRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA 730 (861)
T ss_dssp SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTC--CTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999874540311199999999997278655--676659999999999998405089999999999999
Q ss_pred HHCCCH--------HHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHCCCC--C-CCHHHHHHHHHHHHHH
Q ss_conf 603880--------1223288889999988863457---865767678899999760189--9-9078899999999999
Q 002596 757 ILKHSE--------ELNKSLIENSAITLGRLAWVCP---ELVSPHMEHFMQPWCIALSMI--R-DDTEKEDAFRGLCAMV 822 (902)
Q Consensus 757 ~l~~~~--------~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~~l~~~~~~l~~~--~-d~~e~~~~~~~l~~li 822 (902)
.+.... +....+|.+++.+++.++...+ ..+.++++.+++.+...+... . +..-+..+...+..+.
T Consensus 731 ~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 731 AQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 97367899975889999999999999999999998267788999999999999998748555786999999999999999
Q ss_pred HCC-CHHHHHHHH-HHHHHHHCCCC---CCCHHHHHHHHHHHHHHH
Q ss_conf 709-312454179-98558311343---581779999999999999
Q 002596 823 KAN-PSGALSSLV-FMCRAIASWHE---IRSEELHNEVCQVLHGYK 863 (902)
Q Consensus 823 ~~~-p~~~~~~l~-~~~~~i~~~~~---~~~~~~~~~~~~~l~~~~ 863 (902)
... ++.+.++++ .++..+.+... ..+...++...-....++
T Consensus 811 ~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 811 AMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 8828824889872679999999885355788778999999999999
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=521.05 Aligned_cols=776 Identities=19% Similarity=0.252 Sum_probs=632.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----------HHH
Q ss_conf 9999999711999988899999999975349--991879999852047889899999999999977-----------752
Q 002596 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (902)
Q Consensus 16 ~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~--p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i-----------~~~ 82 (902)
++.++|+.+.|+|++ +|++|+++|+++.+. |+++.+|+.++.+ .+.+..+|++|++.|||.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 689999976298989-999999999998716804699999999857-899879999999999876055434767899864
Q ss_pred HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf 15599758999999885553169967999999999999850376-95589999999972269--9356639999999998
Q 002596 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (902)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~-~~w~~ll~~L~~~l~~~--~~~~r~~al~~L~~l~ 159 (902)
|..++++.+..||+.+++.+.+++..+ +.++.+++.+++.+++ +.||++++.+.+.+.++ ++.+|++++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676225688999999987088987999999999999998
Q ss_pred HHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHCCCCH
Q ss_conf 306110035799988761352499999870499--99999999999999850163466995--99999999985079987
Q 002596 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (902)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 235 (902)
+...... +....+.+++.+.+.+.++ +..+|..+++++..++...+..+... .+.+++.+...+.+.+.
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHCCHHH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 7458766-------786799999999986167999889999999999999999999887178999999999987179988
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-------------------CC
Q ss_conf 89999999999999447121556599-99999986406998889999988999953057-------------------74
Q 002596 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (902)
Q Consensus 236 ~~r~~a~~~l~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~-------------------~~ 295 (902)
++|..++++|..+.+..++.+.+++. .+++.++..+.+.+++++..++++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 99999999999999986999998877899999999963873499999999999998878767665100112477754201
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12377654336999983114781335553210148898877788743222467899999998730000032899999999
Q 002596 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (902)
Q Consensus 296 ~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l 375 (902)
....+++++.++|.++..+...++ | + ++.+|++|.++..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~---~~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-D---DDDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-C---CTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-----------------------------------C-C---CCCCCHHHHHHHHHH
T ss_conf 899999898870799987531334-----------------------------------4-4---545217999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9999660965055168999986503898735778999999999873004-525521999999996105999857999999
Q 002596 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (902)
Q Consensus 376 ~~l~~~~~~~~~~~il~~l~~~l~~~~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~ 454 (902)
+.++...++.+++.+++.+...+.+.+ |+.|++++.++|.+++++. +.+.++++.+++.+++.++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999987758669999999998846998---28999999999999748877789999999999999986799789999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC--------------CCCHHHHHH
Q ss_conf 999864988765206875133499999999999629998999999999999999813--------------452376999
Q 002596 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (902)
Q Consensus 455 ~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~--------------~~l~p~l~~ 520 (902)
|+++++++++.... ....++..+++.++..+.|+ ++||..+++++..+++.++ ..+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHCCHHC---CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999998572011---44777999999999987588-889999999999999985020123444455540321576999
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC--------CCCCCC----H-HH
Q ss_conf 9999999870000---356999999999999983556896113642149999999609--------999865----1-45
Q 002596 521 ILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQQL--------PNSDKD----L-FP 584 (902)
Q Consensus 521 i~~~l~~~l~~~~---~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~--------~~~~~~----~-~~ 584 (902)
+++.+...+...+ ...+..++++++.++...|.... +|+..+++.++..|... +++++. + ..
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY--PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH--HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999997276742046999999999999997743118--999999999999999999887124886359999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9999999999834-244453088999999999999998533663579773258997866689999988441886302003
Q 002596 585 LLECFTSIAQALG-AGFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSN 663 (902)
Q Consensus 585 ~l~~l~~i~~~~g-~~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 663 (902)
++.+++.++..+| ..+.||++.+++.+++.+..... .+..+..++.+++.++..+|..+.+|++.
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-- 649 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG------------SGGVQEDALMAVSTLVEVLGGEFLKYMEA-- 649 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHGGGGGGGHHH--
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 9999999999828542057899999999999985368------------88850899999999999987609999999--
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999982699-9589999999997998656576687399999999984199998663447545999999999860001
Q 002596 664 LRDMLLQCCMDD-ASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQE 742 (902)
Q Consensus 664 i~~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~ 742 (902)
+++.+..++.+. .+.+|..++.++++++..++..+.|+++.+++.+...+.++.. +..+|..+++++|.++...|..
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~--~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENV--HRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTS--CGGGHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999998758650879999999999999988785464599999999997487123--3876399999999999970352
Q ss_pred HHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHHHHHHCC----------CCCCCCHHHHHHHHHHHCCC
Q ss_conf 226899999999996038801--------223288889999988863457----------86576767889999976018
Q 002596 743 ISPIVMTVVLCLVPILKHSEE--------LNKSLIENSAITLGRLAWVCP----------ELVSPHMEHFMQPWCIALSM 804 (902)
Q Consensus 743 ~~~~~~~il~~l~~~l~~~~~--------~~~~~~~~~~~~l~~l~~~~~----------~~~~~~l~~~l~~~~~~l~~ 804 (902)
|.+|++.+++.+...+....+ ....+|+.+..+++.+....+ ..+.||++.+++.+......
T Consensus 728 ~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 807 (876)
T 1qgr_A 728 FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999985558999758899999999999999999999974575555543889999999999999998658
Q ss_pred CC-CCHHHHHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99-907889999999999970931-24541-7998558311-34358177999999999999931
Q 002596 805 IR-DDTEKEDAFRGLCAMVKANPS-GALSS-LVFMCRAIAS-WHEIRSEELHNEVCQVLHGYKQM 865 (902)
Q Consensus 805 ~~-d~~e~~~~~~~l~~li~~~p~-~~~~~-l~~~~~~i~~-~~~~~~~~~~~~~~~~l~~~~~~ 865 (902)
.. +...+..+..++..++...+. .+.++ ...++..+.. ....+++++|+.+...++.+++.
T Consensus 808 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 808 EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 88888999999999999998828488999970489999999875468876899999999999975
No 4
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=518.77 Aligned_cols=809 Identities=13% Similarity=0.170 Sum_probs=610.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC------CC
Q ss_conf 499999999971199998889999999997534999187999985204788989999999999997775215------59
Q 002596 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SM 86 (902)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~------~l 86 (902)
+++++.++|.+++|||++ .| |+++|+++++.|+|+.+|.+++.+ .+.+.++|++|++.|||.|.++|. .+
T Consensus 3 d~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred CHHHHHHHHHHHCCCCHH-HH--HHHHHHHHHCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 599999999976599878-99--999999855599889999999865-79888899999999999998548876567889
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHCC
Q ss_conf 97589999998855531699679999999999998503769558999999997226993566399999999983061100
Q 002596 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (902)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~ 166 (902)
+++.+..||+.++.++.+++..+|++++.+++.|++.++++.||++++.|.+.++++++..+++++.++..+++.....+
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999998087999999999999999861713015799999998478988999999999999999988761
Q ss_pred CCC-CCCCCCCCHHHHHHHHHH-------HHCCCCH---------HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 357-999887613524999998-------7049999---------99999999999985-01634669959999999998
Q 002596 167 DSD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQGLFL 228 (902)
Q Consensus 167 ~~~-~~~~~~~~~~~l~~~l~~-------~l~~~~~---------~vr~~al~~l~~~~-~~~~~~~~~~~~~~l~~l~~ 228 (902)
.+. ....+...+..+++.+++ .++++.. .++..+++++..+. ...+..+..++..+++.+.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 48477899999999989999999999999987357987999999999999999999986256559999989999999999
Q ss_pred HHCC------C--C-------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH
Q ss_conf 5079------9--8-------78999999999999944712155659999999986406-----9988899999889999
Q 002596 229 LSND------P--S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHS 288 (902)
Q Consensus 229 ~~~~------~--~-------~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~-----~~~~~v~~~al~~l~~ 288 (902)
.+.. . + ..+++.+|+++..+.+.+++.+.+|++.+++.++..+. ..++.++..+++||..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 97689985557855331327999999999999999999899999999999999999998437776728999999999999
Q ss_pred HHCCCCCHHHHH--HHHHHHH-HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 530577412377--6543369-9998311478133555321014889887778874322246789999999873000003
Q 002596 289 YFEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (902)
Q Consensus 289 l~~~~~~~~~~~--~~l~~l~-~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~ 365 (902)
+++.+..+..++ ++++.++ +.+++.|.++++|.+.|++++++ +++ +|.+++..|
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~----------------~d~e~~d~~ 375 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR----------------RDLEGSDTD 375 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH----------------HHHHC----
T ss_pred HHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHH-------HHH----------------HCCCCCCCC
T ss_conf 968676899876851899999999687348888789988449999-------998----------------635755123
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHC---CHHHHHH-----HH
Q ss_conf 2899999999999966096505516899998650------38987357789999999998730---0452552-----19
Q 002596 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEG---CIKGLYP-----HL 431 (902)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~------~~~~~~~~~r~~a~~~l~~i~~~---~~~~~~~-----~l 431 (902)
++|++|..+++.++..+++.+++.+++.+.+.+. +.+ |+.|++|++++|.++++ +...... .+
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 7188999999999997013278999999999998736696121---7999999999999998741256774123443569
Q ss_pred HH-HHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99-999996105999---85799999999986498876520687513349999999999962999899999999999999
Q 002596 432 SE-IVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (902)
Q Consensus 432 ~~-ii~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~ 507 (902)
.. +...+++.++|+ +|.||.++||++|+|++++ ...++..+++.++..+.|++++||.+||+|+.+|+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--------~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--------TKAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--------CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999997378744998888330398999999988658--------99999999999999848997219999999999998
Q ss_pred HHH-----------CCCCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 981-----------34523769999999999870000-----35699999999999998355689611364214999999
Q 002596 508 EEA-----------AEELAPRLEIILQHLMMAFGKYQ-----RRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAK 571 (902)
Q Consensus 508 ~~~-----------~~~l~p~l~~i~~~l~~~l~~~~-----~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~ 571 (902)
+.. ++.+.||++.+++.|+.+++... ......++++++.++...++.+. ||++.+++.+...
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~--p~~~~l~~~L~~~ 602 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ--PLFPQLLAQFIEI 602 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG--GGHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf 44364446654435987564699999999999971467877643227999999999998888612--4799999999999
Q ss_pred HHCCCC--CCCCH-HHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 960999--98651-4599999999998342-4445308899999999999999853366357977325899786668999
Q 002596 572 WQQLPN--SDKDL-FPLLECFTSIAQALGA-GFTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGL 647 (902)
Q Consensus 572 l~~~~~--~~~~~-~~~l~~l~~i~~~~g~-~f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l 647 (902)
+..... +++.. ..+++|++.++.+.++ .+.++.+.+++.+..++++. ..++...++.+++.+
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~--------------~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--------------IQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--------------CTTTHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_conf 999973989727889999999999963895369999999999999999860--------------576699999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9988441886302003999999--98269995899999999979986565766873999999999841999986634475
Q 002596 648 AEGLGSGIESLVAQSNLRDMLL--QCCMDDASDVRQSAFALLGDLARVCPVHLQARLSDFLDIAAKQLNTPKLKETVSVA 725 (902)
Q Consensus 648 ~~~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~v~ 725 (902)
+... ..+.+++.+ +++.+. .+++... .......+++.++...++.+.. ++.++..+.+.+.+. . .+
T Consensus 669 ~~~~-~~~~~~~~~--~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~----~--~~ 736 (960)
T 1wa5_C 669 VEQS-ATIPESIKP--LAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK----A--YE 736 (960)
T ss_dssp HHHC-SSCCTTTGG--GHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT----T--TH
T ss_pred HHHC-CCCCHHHHH--HHHHHCCHHHHCCCC--CCHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHCCC----C--CC
T ss_conf 9735-478899999--999980999855778--7355899999999768499999-999999999996799----4--20
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC---------HHHH
Q ss_conf 45999999999860001-2268999999999960388012232888899999888634-57865767---------6788
Q 002596 726 NNACWAIGELAVKARQE-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV-CPELVSPH---------MEHF 794 (902)
Q Consensus 726 ~~a~~alg~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~---------l~~~ 794 (902)
..+++.+|.++...+.+ +.||++.+++.+.+.+..+. ...++...+..++.++.+ +|+.+.+. ...+
T Consensus 737 ~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~ 814 (960)
T 1wa5_C 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSK--TERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIW 814 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHH
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 35999999999979877789889999999999983177--4749999999999999870879999999841605899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHC--------CC--------C---------C
Q ss_conf 9999976018999078899999999999709---31245417998558311--------34--------3---------5
Q 002596 795 MQPWCIALSMIRDDTEKEDAFRGLCAMVKAN---PSGALSSLVFMCRAIAS--------WH--------E---------I 846 (902)
Q Consensus 795 l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~---p~~~~~~l~~~~~~i~~--------~~--------~---------~ 846 (902)
...|+..+....+.+||+.++.|++.++..+ |+...+.++.+++++.+ .. + .
T Consensus 815 ~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~ 894 (960)
T 1wa5_C 815 GNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSH 894 (960)
T ss_dssp HHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCC
T ss_pred HHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99853660301678989999999999986512230357888999999999997087624467753322321001240168
Q ss_pred -----------------CC--HHHHHHHHHHHHHHHHHCCHHHHHHH-HHCCCHHHHHHHHHCC
Q ss_conf -----------------81--77999999999999931283559999-8219988999994202
Q 002596 847 -----------------RS--EELHNEVCQVLHGYKQMLRNGAWDQC-MSALEPPVKDKLSKYQ 890 (902)
Q Consensus 847 -----------------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~y~ 890 (902)
-+ .|++..+.+.+..+.+..+ +.+++. .++++++.++.|+.|-
T Consensus 895 ~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~-~~~~~l~~~~l~~~~~~~l~~~~ 957 (960)
T 1wa5_C 895 FSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISG-NTFLNTILPQLTQENQVKLNQLL 957 (960)
T ss_dssp CCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTT-SCHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCC-CHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8998818788999834415767889999999999751397-24889986169999999999987
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=429.50 Aligned_cols=700 Identities=12% Similarity=0.165 Sum_probs=457.9
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 49999999997119999888999999999753499918799998520478898999999999999777521559975899
Q 002596 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (902)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~ 92 (902)
.++++.+++....+||++ .|++|+++|++++++|++|.++..++.. +.+.++|++|+..|||.|.++|..++++.+.
T Consensus 5 d~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ------CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred HHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCCHHHCCHHHHH
T ss_conf 599999999987699999-9999999999987497989999999835--9949899999999999997158649999999
Q ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHCH
Q ss_conf 999988555316---996799999999999985037695589999999972269------93566399999999983061
Q 002596 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~------~~~~r~~al~~L~~l~~~~~ 163 (902)
.+|+.+++.+.+ .+..||++++.+++.|++.+++ .||++++.+.+.++++ ++..++.++.+|..++++..
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999986799878999999999999997062-243799999999715334567878899999999998599882
Q ss_pred HCCCCCCC----CCCCCCHHHHHHHHHHHHCCC-C-------HHHHHHHHHHHHHHHC--CCCHH---------------
Q ss_conf 10035799----988761352499999870499-9-------9999999999999850--16346---------------
Q 002596 164 QVLDSDVP----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA--------------- 214 (902)
Q Consensus 164 ~~~~~~~~----~~~~~~~~~l~~~l~~~l~~~-~-------~~vr~~al~~l~~~~~--~~~~~--------------- 214 (902)
..-....+ ..+...++.+++.+.+.+++. + ..++..+++|+..++. +.|..
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~ 240 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHK 240 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 46857899999999998799999999999855467888864236799999999999825783865663199999864355
Q ss_pred ---------------------------------------HHHHHHHHHHHHHH-------HHCCCC---HHHHHHHHHHH
Q ss_conf ---------------------------------------69959999999998-------507998---78999999999
Q 002596 215 ---------------------------------------LFVSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAF 245 (902)
Q Consensus 215 ---------------------------------------~~~~~~~~l~~l~~-------~~~~~~---~~~r~~a~~~l 245 (902)
..+.+..+++.++. ...+.+ .+.....++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 30232356655567677479999999999997680113208899999999998689999998565654068999999999
Q ss_pred HHHHHHCHHHHH-----------HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCC----------CCCHHHH
Q ss_conf 999944712155-----------6599999999864069-----9888999998899995305----------7741237
Q 002596 246 NLLIEVRPSFLE-----------PHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA----------QLPHENL 299 (902)
Q Consensus 246 ~~l~~~~~~~~~-----------~~l~~i~~~~~~~~~~-----~~~~v~~~al~~l~~l~~~----------~~~~~~~ 299 (902)
..+.+..+..+. +++..+++.++.+... .+++++..+++||..+++. +.....+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999987315765354999999999999975888888631245878999999999997413310008999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 76543369999831147813355532101488988777887432224678999999987300000328999999999999
Q 002596 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (902)
Q Consensus 300 ~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~ 379 (902)
+|++..+++.++..+.+.+++ + + +++++++.....+.|+++..++..++
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~-~-~-----------------------------~~~d~~e~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEK-S-L-----------------------------AKWSSDDLECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTT-T-T-----------------------------SCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCC-C-C-----------------------------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986199962-4-3-----------------------------35677579999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHH
Q ss_conf 660965055168999986503-----8987357789999999998730045255219999999961059--998579999
Q 002596 380 NVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSI 452 (902)
Q Consensus 380 ~~~~~~~~~~il~~l~~~l~~-----~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~--d~~~~vr~~ 452 (902)
..+|+.+++.+++.+.+.+.+ .+ |+.|+++++++|++++++.+...++++.+++ ++..+. |+++.||.+
T Consensus 450 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 450 DVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHCCCCCCCHHHHHH
T ss_conf 9970999999999999999734689873---8999999999999983548033477999999-99856765367899999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-
Q ss_conf 9999986498876520687513349999999999962999899999999999999981345237699999999998700-
Q 002596 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK- 531 (902)
Q Consensus 453 a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~p~l~~i~~~l~~~l~~- 531 (902)
+||++|+|++|+.. ..+++..+++.++..+ | ++|+..||.++.+|++.++..+.||++.+++.+...++.
T Consensus 526 a~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 526 ALETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 99999987888860------8898999999999874-8--5889999999999999988862300799999999997278
Q ss_pred -CCHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHHCCC---
Q ss_conf -003569999999999999835-568961136421499999996099998-------65145999999999983424---
Q 002596 532 -YQRRNLRIVYDAIGTLADAVG-FELNQPVYLDILMPPLIAKWQQLPNSD-------KDLFPLLECFTSIAQALGAG--- 599 (902)
Q Consensus 532 -~~~~~~~~~~~al~~l~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~-------~~~~~~l~~l~~i~~~~g~~--- 599 (902)
.+...+..++++++.++.+.+ +.. .+|+..++++++..|+....+. ......+++++.+...++..
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 674 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPEEI--PKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE 674 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTTHH--HHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99928999999999999972999999--9999999989999999998568998225999999999999998416777685
Q ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf ----------4453088999999999999998533663579773258997866689999988441886302003999999
Q 002596 600 ----------FTQFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLL 669 (902)
Q Consensus 600 ----------f~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~ 669 (902)
+.+|.+.+++.+..++.... .+.++++.+..+++.++..+|+.+.++++. +++.+.
T Consensus 675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~~~l~ 740 (971)
T 2x1g_F 675 QATDQPIVQPVLLVMQRTMPIFKRIAEMWV------------EEIDVLEAACSAMKHAITNLRSSFQPMLQD--LCLFIV 740 (971)
T ss_dssp ---------CCHHHHHTTHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHH
T ss_conf 333456788369999999999999998643------------637899999999999998614404252789--999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9826999589999999997998656576------6873999999999841999---986634475459999999998600
Q 002596 670 QCCMDDASDVRQSAFALLGDLARVCPVH------LQARLSDFLDIAAKQLNTP---KLKETVSVANNACWAIGELAVKAR 740 (902)
Q Consensus 670 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~~il~~l~~~l~~~---~~~~~~~v~~~a~~alg~l~~~~~ 740 (902)
..++.... ..++++++.++..++.. +.+.+..+...+...+... ...+.++++......++.++.+.+
T Consensus 741 ~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 741 ASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp HHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred HHHHCCCC---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99866883---499999999999958890058999999999999999998606546776484489999999999998685
Q ss_pred HHHH--HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0122--68-999999999960388012232888899999888634
Q 002596 741 QEIS--PI-VMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWV 782 (902)
Q Consensus 741 ~~~~--~~-~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 782 (902)
..+. |. ++.++...+..+..++ ......++.++..++..
T Consensus 818 ~~~~~s~~~l~~i~~~~~~~l~~~~---~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 818 QVLEDKTLAYDRLVFYAQRGMTLPE---SGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GGGGCTTSCHHHHHHHHHHHHTSSC---SSHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHC
T ss_conf 9981882128999999999828787---78999999999999860
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=428.90 Aligned_cols=727 Identities=14% Similarity=0.213 Sum_probs=507.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 96549999999997119999888999999999753499918799998520478898999999999999777521559975
Q 002596 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (902)
Q Consensus 10 ~~~~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~ 89 (902)
.+..++++.+++..+.+|+++ .|++|+++|++++++|++|.++..++.+ +.+.++|++|++.|||.|.++|..++++
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred CCCCHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 846599999999998689938-9999999999988395699999999862--9988999999999999997607049999
Q ss_pred HHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8999999885553169---------9679999999999998503769558999999997226993566399999999983
Q 002596 90 NQQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (902)
Q Consensus 90 ~~~~i~~~ll~~l~~~---------~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~ 160 (902)
.+..||+.++..+.+. +..+|++++.+++.|++.++++.||++++.+.+.++ .++..++.++.+|..+++
T Consensus 88 ~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999862776200000289999999999999997681115479999999871-585889999999999999
Q ss_pred HCHHCCCCCCC--------CCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCHHHH---------------
Q ss_conf 06110035799--------98876135249999987049-9999999999999998501634669---------------
Q 002596 161 DIPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALF--------------- 216 (902)
Q Consensus 161 ~~~~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~--------------- 216 (902)
+....-..+.. ..+...++.+++.+.+.+++ .+..++..+++|+..++.+.+....
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99872600132689999999999999999999999998668889999999999999860889988605599999998689
Q ss_pred ----------------------------HHH----HHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----------------------------959----999999998--------------5079987899999999999994
Q 002596 217 ----------------------------VSM----DQYLQGLFL--------------LSNDPSAEVRKLVCAAFNLLIE 250 (902)
Q Consensus 217 ----------------------------~~~----~~~l~~l~~--------------~~~~~~~~~r~~a~~~l~~l~~ 250 (902)
..+ +.++..+.. ...+.+.+.....++.+..+.+
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~ 326 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA 326 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87679999999999994889950346889999999999999988627985417877445771028999999999999999
Q ss_pred HCHHH------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 47121------556599999999864069988899999889999530----57741237765433699998311478133
Q 002596 251 VRPSF------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (902)
Q Consensus 251 ~~~~~------~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~----~~~~~~~~~~~l~~l~~~ll~~l~~~~~d 320 (902)
...+. +.+++..+++.++.+....+++++..+++||..+++ .+......++++..+++.++..|.+.+ |
T Consensus 327 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d 405 (1049)
T 3m1i_C 327 RNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-E 405 (1049)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf 999998288214799999999999988689089999999999999999974635899999999999999998658996-2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 55532101488988777887432224678999999987300000328999999999999660965055168999986503
Q 002596 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (902)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~ 400 (902)
.+|.++++ .++++ +.. + +.++|+.|+++..+|..++...+..+++.+.+.+.+.+++
T Consensus 406 ~~~~~dd~-------~e~~r-----------~~~--~---d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~ 462 (1049)
T 3m1i_C 406 VLVVENDE-------GEIVR-----------EFV--K---ESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG 462 (1049)
T ss_dssp CCEEECTT-------SCEEE-----------CSS--C---CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS
T ss_pred EEEEECCC-------CCCHH-----------HHH--C---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 00005799-------85048-----------653--1---2227999999999999988369899999999999987277
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --8987357789999999998730045255-219999999961059-----99857999999999864988765206875
Q 002596 401 --SGDEAWKDREAAVLALGAIAEGCIKGLY-PHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (902)
Q Consensus 401 --~~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~l~~ii~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 472 (902)
.+ |+.|+++++++|++++++.+... ++++.+++.+..... |+++.+|..+||++|+|++|+..
T Consensus 463 ~~~~---W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------ 533 (1049)
T 3m1i_C 463 SEWS---WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------ 533 (1049)
T ss_dssp SSCC---HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------
T ss_pred CCCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH------
T ss_conf 8789---8999999999999860237625579999999999987765435665499998899999977999986------
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 1334999999999996299989999999999999998134523--------76999999999987000035699999999
Q 002596 473 GREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAI 544 (902)
Q Consensus 473 ~~~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l~--------p~l~~i~~~l~~~l~~~~~~~~~~~~~al 544 (902)
...++..+++.++..+.|++++|+..||.++.+|++.++..+. ||++.++..+..++...+......+++++
T Consensus 534 ~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai 613 (1049)
T 3m1i_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 78999999999999861898789999999999999998898611567787757999999899999858999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC------C---CC----CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 999998355689611364214999999960999------9---86----5145999999999983424445308899999
Q 002596 545 GTLADAVGFELNQPVYLDILMPPLIAKWQQLPN------S---DK----DLFPLLECFTSIAQALGAGFTQFAQPVFQRC 611 (902)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~------~---~~----~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l 611 (902)
+.++...+..-...+|+..+|+++.+.|+.... + +. .+..+++|++.++..+|+.|.|+++.++..+
T Consensus 614 ~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~ 693 (1049)
T 3m1i_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNM 693 (1049)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997599789999999999988999999999987316464048799999999999999999985678899999999999
Q ss_pred HHHHHHHHHH-----HHCCCCCCCCCCHHHH--------------------------------------------HH---
Q ss_conf 9999999998-----5336635797732589--------------------------------------------97---
Q 002596 612 INIIQTQQLA-----KVDSVAAGAQYDKEFV--------------------------------------------VC--- 639 (902)
Q Consensus 612 ~~~l~~~~~~-----~~~~~~~~~e~d~~~~--------------------------------------------~~--- 639 (902)
+.+++..... ...+......+....+ .+
T Consensus 694 l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 773 (1049)
T 3m1i_C 694 LQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD 773 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999989999970585022108899999999999999999998479779999987899999999988718963236
Q ss_pred --HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----C--CCCHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHH
Q ss_conf --866689999988441886302003999999982-----6--999589999999997998656576687----399999
Q 002596 640 --CLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCC-----M--DDASDVRQSAFALLGDLARVCPVHLQA----RLSDFL 706 (902)
Q Consensus 640 --al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~~-----~--~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~il 706 (902)
++++++.++..+|+.+.+++++ ++..+..+. + ++.+++|++.+.++++++++|+..+.+ .+..++
T Consensus 774 ~~~l~l~~~ii~~~~~~~~~~l~~--i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~ 851 (1049)
T 3m1i_C 774 AEVLNCMTTVVEKVGHMIPQGVIL--ILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFV 851 (1049)
T ss_dssp THHHHHHHHHHHHHGGGCHHHHHH--HHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHH
T ss_conf 879999999999988760666899--999999999999852421089999999999999998678999759999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99998419999866344754599999999986000--------1-22689999999999603880122328888999998
Q 002596 707 DIAAKQLNTPKLKETVSVANNACWAIGELAVKARQ--------E-ISPIVMTVVLCLVPILKHSEELNKSLIENSAITLG 777 (902)
Q Consensus 707 ~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~--------~-~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~ 777 (902)
...+..+..+ ...+...++..+-.+...... . +..|...++..+...+.++. ++...+..+..+.
T Consensus 852 ~~~~~al~~~----~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~--h~s~~~~~~~~l~ 925 (1049)
T 3m1i_C 852 DAICWAFKHN----NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD--HKSGFSKQALLLM 925 (1049)
T ss_dssp HHHHHHHTCC----SHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTT--CGGGHHHHHHHHH
T ss_pred HHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHH
T ss_conf 9999994799----816999999999999999876288688999999999999999999985642--7521899999999
Q ss_pred HHHH
Q ss_conf 8863
Q 002596 778 RLAW 781 (902)
Q Consensus 778 ~l~~ 781 (902)
+++.
T Consensus 926 ~l~~ 929 (1049)
T 3m1i_C 926 KLIS 929 (1049)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=423.80 Aligned_cols=754 Identities=15% Similarity=0.173 Sum_probs=524.5
Q ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 549999999997-1199998889999999997534999187999985204788989999999999997775215599758
Q 002596 12 QGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (902)
Q Consensus 12 ~~~~~~~~~l~~-~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~ 90 (902)
..++++.+++.. ..++|++ .|++|+++|++++++|++|.++..++.+ +.+.++|++|++.|||.|.++|..++++.
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 97 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQ 97 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGG
T ss_pred HHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCHHHCCHHH
T ss_conf 55999999999983597989-9999999999984699999999998657--97258899999999999973887499999
Q ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999988555316---99679999999999998503769558999999997226-----99356639999999998306
Q 002596 91 QQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDI 162 (902)
Q Consensus 91 ~~~i~~~ll~~l~~---~~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~-----~~~~~r~~al~~L~~l~~~~ 162 (902)
+..||+.+++.+.+ .+..+|++++.+++.|++.++++.||++++.+.+.+++ +++..++.++.+|..++++.
T Consensus 98 ~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~ 177 (963)
T 2x19_B 98 YESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF 177 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHH
T ss_conf 99999999999998748988999999999999998748311555999999998643357874788999999998689988
Q ss_pred HHC-CC----CCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH----------------------------
Q ss_conf 110-03----5799988761352499999870499--999999999999998----------------------------
Q 002596 163 PQV-LD----SDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQF---------------------------- 207 (902)
Q Consensus 163 ~~~-~~----~~~~~~~~~~~~~l~~~l~~~l~~~--~~~vr~~al~~l~~~---------------------------- 207 (902)
... .. ......+...++.+++.+.+.+.+. +..++..+++|+..+
T Consensus 178 ~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~ 257 (963)
T 2x19_B 178 QTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFD 257 (963)
T ss_dssp TTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 50658699999999999987889999999998277880579999999999998289985341689999999867964799
Q ss_pred ---------HCCC-CHHHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHH
Q ss_conf ---------5016-346699599999999985-------0799878999999999999944712155------6599999
Q 002596 208 ---------IMLM-PSALFVSMDQYLQGLFLL-------SNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLF 264 (902)
Q Consensus 208 ---------~~~~-~~~~~~~~~~~l~~l~~~-------~~~~~~~~r~~a~~~l~~l~~~~~~~~~------~~l~~i~ 264 (902)
+... +....+.+..+++.++.. ..+.+.+.....++.+..+.+..+..+. +++..++
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999975311245779999999999740799999998779899999999999999986999973755658999999
Q ss_pred HHHHHHHCC-----CCHHHHHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 999864069-----9888999998899995305---------77412377654336999983114781335553210148
Q 002596 265 EYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (902)
Q Consensus 265 ~~~~~~~~~-----~~~~v~~~al~~l~~l~~~---------~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~ 330 (902)
+.++.+..+ .+++++..+++||..+++. +.....++|++.++++.++..|.+.+++. +++
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~--~~~---- 411 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEE--YGF---- 411 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHH--HHT----
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCC----
T ss_conf 99999975888887203454412999999999998623444578899999999999999999980998302--267----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCCCCC
Q ss_conf 89887778874322246789999999873000003-289999999999996609650551689999865----0389873
Q 002596 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDEA 405 (902)
Q Consensus 331 ~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l----~~~~~~~ 405 (902)
. + +|+.++| +.|+++..++..++...++.+++.+++.+.+.+ .+.+
T Consensus 412 -----------------------~--~-~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~--- 462 (963)
T 2x19_B 412 -----------------------W--S-SDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS--- 462 (963)
T ss_dssp -----------------------S--C-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC---
T ss_pred -----------------------C--C-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC---
T ss_conf -----------------------7--7-6389999999999999999999970689999999999999972579986---
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 57789999999998730045255219999999961059998579999999998649887652068751334999999999
Q 002596 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (902)
Q Consensus 406 ~~~r~~a~~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~ 485 (902)
|+.|+++++++|.+++++.+...++++.+++.+ ..+.++++.||.+++|++|+|++++.. ...++..+++.++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~~l~ 535 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHH
T ss_conf 679989999999997043822467899999999-857998589999999999988888875------8898999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH
Q ss_conf 9962999899999999999999981345237699999999998700--003569999999999999835-5689611364
Q 002596 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK--YQRRNLRIVYDAIGTLADAVG-FELNQPVYLD 562 (902)
Q Consensus 486 ~~l~d~~~~v~~~a~~al~~l~~~~~~~l~p~l~~i~~~l~~~l~~--~~~~~~~~~~~al~~l~~~~~-~~~~~~~~~~ 562 (902)
..+.+ +.|+..||.++.++++.++..+.||++.+++.+...++. .+...+..++++++.++.+.+ +.+. +|++
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~--~~~~ 611 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL--KNLH 611 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH--HHHH
T ss_pred HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH--HHHH
T ss_conf 87178--4689999999999999989987766999999999986357898488999999999999629999999--9999
Q ss_pred HHHHHHHHHHHCCCCC--CCC----HHHHHHHHHHHHHHHCCCC----------------------CCCCHHHHHHHHHH
Q ss_conf 2149999999609999--865----1459999999999834244----------------------45308899999999
Q 002596 563 ILMPPLIAKWQQLPNS--DKD----LFPLLECFTSIAQALGAGF----------------------TQFAQPVFQRCINI 614 (902)
Q Consensus 563 ~l~~~l~~~l~~~~~~--~~~----~~~~l~~l~~i~~~~g~~f----------------------~~~~~~i~~~l~~~ 614 (902)
.+|+++...|+....+ ++. +...++|++.++++++..+ .++.+.+++.+.++
T Consensus 612 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 612 SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99989999999998278987789999999999999997748986433222322124777788994699999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH-
Q ss_conf 999999853366357977325899786668999998844188630200399999998269-995899999999979986-
Q 002596 615 IQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGLGSGIESLVAQSNLRDMLLQCCMD-DASDVRQSAFALLGDLAR- 692 (902)
Q Consensus 615 l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~vr~~a~~~l~~l~~- 692 (902)
+.... + +.+..+.+..+++.++..+|+.+.++++. +++.+...++. +.+ ..+.+++.++.
T Consensus 692 l~~~~-----------~-~~~v~e~~~~~l~~~~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~----~~l~l~~~li~~ 753 (963)
T 2x19_B 692 LSKWL-----------N-DAQVVEAVCAIFEKSVKTLLDDFAPMVPQ--LCEMLGRMYSTIPQA----SALDLTRQLVHI 753 (963)
T ss_dssp HHHHT-----------T-CHHHHHHHHHHHHHHHHHSSSTTGGGHHH--HHHHHHHHHHHSCCH----HHHHHHHHHHHH
T ss_pred HHHCC-----------C-CHHHHHHHHHHHHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCCC----HHHHHHHHHHHH
T ss_conf 98566-----------7-46899999999999997501034240799--999999998757850----899999999998
Q ss_pred -HCHHHHHHHHHHHH----HHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHCCCHH
Q ss_conf -56576687399999----99998419-99986634475459999999998600012--268-99999999996038801
Q 002596 693 -VCPVHLQARLSDFL----DIAAKQLN-TPKLKETVSVANNACWAIGELAVKARQEI--SPI-VMTVVLCLVPILKHSEE 763 (902)
Q Consensus 693 -~~~~~~~~~~~~il----~~l~~~l~-~~~~~~~~~v~~~a~~alg~l~~~~~~~~--~~~-~~~il~~l~~~l~~~~~ 763 (902)
..+..+.+++..++ ..+...+. +.. +.++++......++.++.+.+..+ .+. +..++..+...+...+
T Consensus 754 f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~- 830 (963)
T 2x19_B 754 FAHEPAHFPPIEALFLLVTSVTLTLFQQGPR--DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPE- 830 (963)
T ss_dssp HTTCTTTCHHHHHHHHHHHHHHHHHHHHCTT--TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSC-
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCC-
T ss_conf 5778013789999999999999999862765--5863899999999999975839872985147999999999757897-
Q ss_pred HHHHHHHHHHHHHHHHHHHCC--C----CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 223288889999988863457--8----6576767889999976018999078899999999999709312454179985
Q 002596 764 LNKSLIENSAITLGRLAWVCP--E----LVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMC 837 (902)
Q Consensus 764 ~~~~~~~~~~~~l~~l~~~~~--~----~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~~~ 837 (902)
..+...++.++..++...+ . .+.++...++...+..+...............+..++..+|......+...+
T Consensus 831 --~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l 908 (963)
T 2x19_B 831 --APTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEAL 908 (963)
T ss_dssp --HHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf --799999999999998518973789999999799999999998533598467788999999999977199999999984
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=392.90 Aligned_cols=828 Identities=14% Similarity=0.167 Sum_probs=511.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC------C----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999997119999888999999999753499------9----187999985204788989999999999997775215
Q 002596 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP------D----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (902)
Q Consensus 15 ~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p------~----~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~ 84 (902)
.++.++|+.+.|+|++ .|++|+..|.+.-+.+ . ....+...+. +.++.+|+.|+..|.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHCCCCCHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH----
T ss_conf 6999999755898785-9999999999997416657875679999999999866---9998999999999999997----
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 5997589999998855531699679999999999998503769---------55899999999722-6993566399999
Q 002596 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (902)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~~---------~w~~ll~~L~~~l~-~~~~~~r~~al~~ 154 (902)
.+++.....+++.++..+.+++..+|..++.+++.++...++. .|+++++.|...+. ++++.+|++++.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 58798999999999998669838899999999999999679744444117889999999999987578846799999999
Q ss_pred HHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 9999830611003579998876135249999987049999999999999999850163466995-999999999850799
Q 002596 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP 233 (902)
Q Consensus 155 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 233 (902)
+..+++..+..+ ..+.+.+++.+++.+.+++..||..|+.+++.++...++.+.+. ++.+++.+.. +.
T Consensus 158 l~~~~~~~~~~l--------~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~---~~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLL--------VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK---ND 226 (1230)
T ss_dssp HHHHHHHTCSSC--------TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHH---TC
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CC
T ss_conf 999999827677--------8879999999999875996899999999999999856899999999999998616---77
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999999994471215565999999998640699888999998899995305774123776543369999831
Q 002596 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (902)
Q Consensus 234 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~ 313 (902)
+..+|..++.++..++...++.+.+|++.+++.++..+.+.++++|..+++++..+++. .+..+.||++.++|.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_conf 55689999999999999868989988999999999986689778999999999999997--8487777689999999998
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHHHHHHHHHCCC---CH
Q ss_conf 1478133555321014889887778874322246789999999----8730000032899999999999966096---50
Q 002596 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED----DDDDIVNVWNLRKCSAAALDVLSNVFGD---EI 386 (902)
Q Consensus 314 l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~----dd~d~~~~~~~r~~a~~~l~~l~~~~~~---~~ 386 (902)
+.+.+.. ..+++.++ .+..+. . .+.+++++ ..++++..|.+|.+|+.+++.++...++ ..
T Consensus 305 l~~d~~~--~~~~d~~~--~~~~~~-------~--~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDED--ENAMDA-------D--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HCCCCCC--CCCCCCCC--CCCCCC-------C--CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 2789988--87644110--112233-------4--465301100136664555677999999999999997466679999
Q ss_pred H------------------------------------------------------------HHHHHHHHHHHCCCCCCCH
Q ss_conf 5------------------------------------------------------------5168999986503898735
Q 002596 387 L------------------------------------------------------------PTLMPVIQAKLSASGDEAW 406 (902)
Q Consensus 387 ~------------------------------------------------------------~~il~~l~~~l~~~~~~~~ 406 (902)
+ +.+++.+.+.+.+++ |
T Consensus 372 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~---~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS---V 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC---H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---H
T ss_conf 9999899998717986579999999999999972424343467520135645599999874699999999861377---8
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 77899999999987300452552199999999610599985--7999999999864988765206875133499999999
Q 002596 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (902)
Q Consensus 407 ~~r~~a~~~l~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l 484 (902)
+.|.+++.+++.++..+++.+.++++.+++.++..+.|+++ .+|..++.+++.+..... +....+++..+++.+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~l~~llp~L 524 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS----PQVFHPHVQALVPPV 524 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC----GGGGHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHH
T ss_conf 7999999999999997611057779999999999974878851689999999999998389----887886799999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9996299989999999999999998134-------52376999999999987--00003569999999999999835568
Q 002596 485 LKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEIILQHLMMAF--GKYQRRNLRIVYDAIGTLADAVGFEL 555 (902)
Q Consensus 485 ~~~l~d~~~~v~~~a~~al~~l~~~~~~-------~l~p~l~~i~~~l~~~l--~~~~~~~~~~~~~al~~l~~~~~~~~ 555 (902)
+..+.|++.+|+..++.+++.+++.+++ .+.||++.+++.++..+ .+.+..++..++.+++.++...|..+
T Consensus 525 ~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99971424689999999999999871675556532327899999999999873269988999999999999999827032
Q ss_pred CCHHHHHHHHHHHHHHHHCCC-------------------------------------CCCCCH-HHHHHHHHHHHHHHC
Q ss_conf 961136421499999996099-------------------------------------998651-459999999999834
Q 002596 556 NQPVYLDILMPPLIAKWQQLP-------------------------------------NSDKDL-FPLLECFTSIAQALG 597 (902)
Q Consensus 556 ~~~~~~~~l~~~l~~~l~~~~-------------------------------------~~~~~~-~~~l~~l~~i~~~~g 597 (902)
. ++++.+++.+...+.+.. +++..+ ..+++|++.++...+
T Consensus 605 ~--~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 605 G--SDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp C--THHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4--43889999999884453059999999999981856443688899999999999986788899999999999996043
Q ss_pred C------------------------------------------CCCCCCHHHHHHHHHHHHHHH--------------HH
Q ss_conf 2------------------------------------------444530889999999999999--------------98
Q 002596 598 A------------------------------------------GFTQFAQPVFQRCINIIQTQQ--------------LA 621 (902)
Q Consensus 598 ~------------------------------------------~f~~~~~~i~~~l~~~l~~~~--------------~~ 621 (902)
. .+.++.+.+++.++..+.... ..
T Consensus 683 ~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 683 DSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 33898999999999876357541878999999999998849126777677689999999758621057899999999999
Q ss_pred -HHCCC-------------C---CCCC-CCHHHHHHHHHHHHHHHHHHHH------------------------------
Q ss_conf -53366-------------3---5797-7325899786668999998844------------------------------
Q 002596 622 -KVDSV-------------A---AGAQ-YDKEFVVCCLDLLSGLAEGLGS------------------------------ 653 (902)
Q Consensus 622 -~~~~~-------------~---~~~e-~d~~~~~~al~~l~~l~~~~~~------------------------------ 653 (902)
..++. . .+.+ .++..+..+..+++.++...|.
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 842 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 842 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 83478878899999998500357887320001048999999999984656668999999998378876679999999999
Q ss_pred -HH---HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--------------------------------------
Q ss_conf -18---863020039999999826999589999999997998--------------------------------------
Q 002596 654 -GI---ESLVAQSNLRDMLLQCCMDDASDVRQSAFALLGDLA-------------------------------------- 691 (902)
Q Consensus 654 -~~---~~~~~~~~i~~~l~~~~~~~~~~vr~~a~~~l~~l~-------------------------------------- 691 (902)
.+ .++-+.+.+.+.+..++.+++.+||.+|..++|.++
T Consensus 843 ~~~g~~~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 843 GEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp HHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCS
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 98615678765641899999984799778999999996877526999889999998726603249889999999823876
Q ss_pred -------------------------------------HHCHHHH----------------------------------HH
Q ss_conf -------------------------------------6565766----------------------------------87
Q 002596 692 -------------------------------------RVCPVHL----------------------------------QA 700 (902)
Q Consensus 692 -------------------------------------~~~~~~~----------------------------------~~ 700 (902)
...+..+ .+
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~ 1002 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 1002 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 66776699999999987338304468999988756650676888899999856997889999999999997068233589
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---------------HH
Q ss_conf 399999999984199998663447545999999999860001226899999999996038801---------------22
Q 002596 701 RLSDFLDIAAKQLNTPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEE---------------LN 765 (902)
Q Consensus 701 ~~~~il~~l~~~l~~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~---------------~~ 765 (902)
+++.+++.+++.++++ +..||++|+++++.++.+.+..+.+++..+++.|.+.+..... ..
T Consensus 1003 ~l~~~~~~ll~~l~d~----~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~ 1078 (1230)
T 1u6g_C 1003 LLKNCIGDFLKTLEDP----DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1078 (1230)
T ss_dssp HHHHHSTTTHHHHSSS----STHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETH
T ss_pred HHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCC
T ss_conf 8999899999864898----587999999999999842857689779889899998830268760133058960236774
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC---
Q ss_conf 32888899999888634578657676788999997601899907889999999999970931245417998558311---
Q 002596 766 KSLIENSAITLGRLAWVCPELVSPHMEHFMQPWCIALSMIRDDTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIAS--- 842 (902)
Q Consensus 766 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~l~~~~d~~e~~~~~~~l~~li~~~p~~~~~~l~~~~~~i~~--- 842 (902)
..+|++|..|++++...+...+ .+.++++.|+..|+. |.+.+..++..+..++..+|..+.++++.+++.+..
T Consensus 1079 l~~rk~a~~~~~~ll~~~~~~i--~~~~~~~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 1154 (1230)
T 1u6g_C 1079 LDIRKAAFECMYTLLDSCLDRL--DIFEFLNHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT 1154 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSS--CHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999888747--899999999804676--688999999999999840879899999999999999984
Q ss_pred --CCCC---C----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH--HHHH-CC-CCHH
Q ss_conf --3435---8----1779999999999999312835599998219988999--9942-02-2001
Q 002596 843 --WHEI---R----SEELHNEVCQVLHGYKQMLRNGAWDQCMSALEPPVKD--KLSK-YQ-VHDS 894 (902)
Q Consensus 843 --~~~~---~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~-y~-~~~~ 894 (902)
.++. + .+|+...+.+.+..+....|. .-.+.|..|-..+++ .|.. |. +.++
T Consensus 1155 ~~~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1218 (1230)
T 1u6g_C 1155 TKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA-EKSPLMSEFQSQISSNPELAAIFESIQKD 1218 (1230)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSC-SSSSSCCCCCHHHHHHHHHTC--------
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 11463436524889999999999999999807884-22748999999998077899999999987
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=385.30 Aligned_cols=568 Identities=14% Similarity=0.239 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 49999999997119999888999999999753499918799998520478898999999999999777521559975899
Q 002596 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (902)
Q Consensus 13 ~~~~~~~~l~~~~s~~~~~~r~~a~~~L~~~~~~p~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~ 92 (902)
.++++.+++....+|+++ .|++|+++|++++++|++|..+..++.+ +.++++|++|+..||+.|.++|..++++.+.
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~ 90 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRI 90 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred CHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999998499959-9999999999987195488899999538--9988999999999999997611129999999
Q ss_pred HHHHHHHHHHHC----C-----CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf 999988555316----9-----9679999999999998503769558999999997226993566399999999983061
Q 002596 93 YIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (902)
Q Consensus 93 ~i~~~ll~~l~~----~-----~~~vR~~~a~~i~~i~~~~~~~~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~ 163 (902)
.||+.+++.+.. + ...+|++.+.+++.|++.++|..||++++.+.+.++++ +..++.++.+|..+.++..
T Consensus 91 ~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 91 GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998657852222319999999999999999857332328999999985699-7789999999999999998
Q ss_pred HCCCCCCC----CC----CCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCHHH-------------------
Q ss_conf 10035799----98----876135249999987049-999999999999999850163466-------------------
Q 002596 164 QVLDSDVP----GL----AECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSAL------------------- 215 (902)
Q Consensus 164 ~~~~~~~~----~~----~~~~~~~l~~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~------------------- 215 (902)
..-..+.. .. +....+.+++.+.+.+.+ .++.+...+++|+..++.+.+-..
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~ 249 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPD 249 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCCHH
T ss_conf 71000015999888999999989999999999982789889999999999999984899875144499999998769878
Q ss_pred ------------------------H----HHHHHHHHHH-H-------------HHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf ------------------------9----9599999999-9-------------85079987899999999999994471
Q 002596 216 ------------------------F----VSMDQYLQGL-F-------------LLSNDPSAEVRKLVCAAFNLLIEVRP 253 (902)
Q Consensus 216 ------------------------~----~~~~~~l~~l-~-------------~~~~~~~~~~r~~a~~~l~~l~~~~~ 253 (902)
. ..+..+++.+ . ....+.+.+.....+..+..+.+...
T Consensus 250 ~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~ 329 (1023)
T 4hat_C 250 TRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1023)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999980425785577889999999999999999737974128999862663119999999999999999999
Q ss_pred HHHH--HH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 2155--65----999999998640699888999998899995305----7741237765433699998311478133555
Q 002596 254 SFLE--PH----LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (902)
Q Consensus 254 ~~~~--~~----l~~i~~~~~~~~~~~~~~v~~~al~~l~~l~~~----~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~ 323 (902)
..+. ++ +...+..++.+....+.++...+++||..+.+. +.....++|++.++++.++..|.+.+++.-
T Consensus 330 ~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~i- 408 (1023)
T 4hat_C 330 ALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV- 408 (1023)
T ss_dssp GGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCE-
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 9986791035899999999998618992889999999999999999856578888999999999999986579820266-
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--
Q ss_conf 321014889887778874322246789999999873000003-28999999999999660965055168999986503--
Q 002596 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW-NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-- 400 (902)
Q Consensus 324 ~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd~d~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~il~~l~~~l~~-- 400 (902)
.+++.. +.++ +.. +|.|+...| ..| .+|..++...++.+++.+++.+.+.+.+
T Consensus 409 ve~d~~-------~~~~------------e~~-~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~ 464 (1023)
T 4hat_C 409 VENDEG-------EIVR------------EFV-KESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1023)
T ss_dssp EECTTS-------CEEE------------CSS-CCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSSTT
T ss_pred CCCCCC-------CHHH------------HHC-CCHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 778886-------0888------------714-4558899999999----999998606878999999999999854887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 89873577899999999987300452-55219999999961059-----9985799999999986498876520687513
Q 002596 401 SGDEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (902)
Q Consensus 401 ~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~l~~ii~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 474 (902)
.+ |+.|+++++++|++++++.+. ..++++.+++.++.... |+.+.||..+||++|++++|+.. ..
T Consensus 465 ~~---W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~ 535 (1023)
T 4hat_C 465 WS---WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HW 535 (1023)
T ss_dssp CC---HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CH
T ss_pred CC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_conf 88---8999899999999976898155788899999999975410346762599999999999999999861------67
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 3499999999999629998999999999999999813452--------37699999999998700003569999999999
Q 002596 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (902)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~v~~~a~~al~~l~~~~~~~l--------~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~ 546 (902)
.++.+++..++.++.+++++|+..||+|+.++++.|+..+ .||++.++..+..++...+...+..++++++.
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98999999999986169878999999999999999888761357777860699999999999884798889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 9998355689611364214999999960999-------------986514599999999998342444530889999999
Q 002596 547 LADAVGFELNQPVYLDILMPPLIAKWQQLPN-------------SDKDLFPLLECFTSIAQALGAGFTQFAQPVFQRCIN 613 (902)
Q Consensus 547 l~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------------~~~~~~~~l~~l~~i~~~~g~~f~~~~~~i~~~l~~ 613 (902)
++.+.+.....+.+++.+|+++...|+.... ....+..+++|++.++.++|..|.|++..+++.+++
T Consensus 616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~ 695 (1023)
T 4hat_C 616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQ 695 (1023)
T ss_dssp HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99858877448999999988589999999998722725412878899999999999999998268899999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 002596 614 IIQTQ 618 (902)
Q Consensus 614 ~l~~~ 618 (902)
..+..
T Consensus 696 ~y~~~ 700 (1023)
T 4hat_C 696 LYRAV 700 (1023)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=375.89 Aligned_cols=723 Identities=16% Similarity=0.176 Sum_probs=559.1
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 91879999852047889899999999999977752155997589999998855531699679999999999998503769
Q 002596 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (902)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~Lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vR~~~a~~i~~i~~~~~~~ 127 (902)
+....+..++....+.+.++|..|-..|++. .. .++...++. .++..+.+.+..+|..++..+...++..+..
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~-----~~-~p~~~~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQL-----NQ-YPDFNNYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TT-SHHHHHHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HH-CCCHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 2399999999987394989999999999998-----70-998899999-9985668898679999999999989874477
Q ss_pred ----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ----5589999999972269935663999999999830611003579998876135249999987049999999999999
Q 002596 128 ----GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (902)
Q Consensus 128 ----~w~~ll~~L~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~al~~ 203 (902)
.-..+-+.+.+.+.++++.+|..+..+++.++..... ..++.+++.+.+.+++++..+|..++.+
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-----------~~wp~ll~~L~~~l~~~~~~~r~~al~~ 151 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-----------QNWPDLLPKLCSLLDSEDYNTCEGAFGA 151 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-----------TTCTTHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999987499899999999999999986481-----------3568999999998709998999999999
Q ss_pred HHHHHCCCCHHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99985016346699-----5999999999850799878999999999999944712155659999999986406998889
Q 002596 204 VNQFIMLMPSALFV-----SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDV 278 (902)
Q Consensus 204 l~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v 278 (902)
+..+.+..+..+.. .+..+++.+...+++++..+|..++.++..++...+..+.++++.+++.+.....+.+.++
T Consensus 152 L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~v 231 (852)
T 4fdd_A 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEV 231 (852)
T ss_dssp HHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999985787563431332999999999985679789999999999999864638799889999999998717997789
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998899995305774123776543369999831147813355532101488988777887432224678999999987
Q 002596 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (902)
Q Consensus 279 ~~~al~~l~~l~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~d~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~dd 358 (902)
|..+++.+..+++. ....+.++++.+++.++..+...+
T Consensus 232 r~~a~~~L~~l~~~--~~~~~~~~l~~l~~~l~~~~~~~~---------------------------------------- 269 (852)
T 4fdd_A 232 RKNVCRALVMLLEV--RMDRLLPHMHNIVEYMLQRTQDQD---------------------------------------- 269 (852)
T ss_dssp HHHHHHHHHHHHHH--CHHHHGGGHHHHHHHHHHHHTCSS----------------------------------------
T ss_pred HHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHCCCCC----------------------------------------
T ss_conf 99999999999985--779899889999999998706996----------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH-----------CC--CC--C----CCHHHHHHHHH
Q ss_conf 300000328999999999999660-----9650551689999865-----------03--89--8----73577899999
Q 002596 359 DDIVNVWNLRKCSAAALDVLSNVF-----GDEILPTLMPVIQAKL-----------SA--SG--D----EAWKDREAAVL 414 (902)
Q Consensus 359 ~d~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~il~~l~~~l-----------~~--~~--~----~~~~~r~~a~~ 414 (902)
..+|..|..++..++... -...++.+++.+...+ .+ ++ + ..|..|.+|..
T Consensus 270 ------~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~ 343 (852)
T 4fdd_A 270 ------ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAA 343 (852)
T ss_dssp ------HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ------89999999999998603657988788898899999987578676799866984432224564011169999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99998730045255219999999961059998579999999998649887652068751334999999999996299989
Q 002596 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR 494 (902)
Q Consensus 415 ~l~~i~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~ 494 (902)
+++.++...++ ..++.+++.+...++|+++.+|.+|++++|.+++..... ...++..+++.++..+.|+++.
T Consensus 344 ~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-----~~~~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 344 ALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG-----MIPYLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-----HGGGHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999874618---789999999999855998899999999999998635688-----9987999999999871799889
Q ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999813-45237699999999998700003569999999999999835568961136421499999996
Q 002596 495 VQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQPVYLDILMPPLIAKWQ 573 (902)
Q Consensus 495 v~~~a~~al~~l~~~~~-~~l~p~l~~i~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~l~ 573 (902)
||..|+++++.+++..+ ....+|++.+++.++..+.+.+..++..++.+++.+++..+..+. +|++.+++.+...++
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~--~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV--PYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf 999999999999988611047899999999999998589888999999999999997367667--679999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0999986514599999999998342444--53088999999999999998533663579773258997866689999988
Q 002596 574 QLPNSDKDLFPLLECFTSIAQALGAGFT--QFAQPVFQRCINIIQTQQLAKVDSVAAGAQYDKEFVVCCLDLLSGLAEGL 651 (902)
Q Consensus 574 ~~~~~~~~~~~~l~~l~~i~~~~g~~f~--~~~~~i~~~l~~~l~~~~~~~~~~~~~~~e~d~~~~~~al~~l~~l~~~~ 651 (902)
... ......++++++.++...|..+. +|++.+++.+++.+..-. +.+++.+ .++++++.++..+
T Consensus 494 ~~~--~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~-----------d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 494 KYQ--HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK-----------DEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HCC--HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC-----------TTCTTHH-HHHHHHHHHHHHH
T ss_pred HHC--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-----------CCCHHHH-HHHHHHHHHHHHH
T ss_conf 837--4799999999999999742431367899998899999987333-----------0469999-9999999999997
Q ss_pred HHHHHHHHCC--CHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHCC
Q ss_conf 4418863020--03999999982-------------699958999999999799865657668739--999999998419
Q 002596 652 GSGIESLVAQ--SNLRDMLLQCC-------------MDDASDVRQSAFALLGDLARVCPVHLQARL--SDFLDIAAKQLN 714 (902)
Q Consensus 652 ~~~~~~~~~~--~~i~~~l~~~~-------------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~ 714 (902)
|..+.+|++. +.++..+..++ ..++.+++..++.+++.++...+..+.+++ +.+++.+...+.
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 48679889999999999999999999875338866688761199999999978999874769988367718999999838
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 99986634475459999999998600012268999999999960388012232888899999888634578657676788
Q 002596 715 TPKLKETVSVANNACWAIGELAVKARQEISPIVMTVVLCLVPILKHSEELNKSLIENSAITLGRLAWVCPELVSPHMEHF 794 (902)
Q Consensus 715 ~~~~~~~~~v~~~a~~alg~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~ 794 (902)
++ ...+|..|.+++|.++...+.++.+|++.+++.+...++... ..++.+++.++|.++...+..+.||++.+
T Consensus 640 ~~----~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~---~~v~~~a~~alg~i~~~~~~~~~p~~~~i 712 (852)
T 4fdd_A 640 DK----MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF---ISVCNNATWAIGEISIQMGIEMQPYIPMV 712 (852)
T ss_dssp CS----SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS---HHHHHHHHHHHHHHHHHHGGGGGGGTHHH
T ss_pred CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99----844999999999999998168889879999999998769420---68999999999999997117678789999
Q ss_pred HHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999976018999-0788999999999997093124541799855831134-35817799999999999993128
Q 002596 795 MQPWCIALSMIRD-DTEKEDAFRGLCAMVKANPSGALSSLVFMCRAIASWH-EIRSEELHNEVCQVLHGYKQMLR 867 (902)
Q Consensus 795 l~~~~~~l~~~~d-~~e~~~~~~~l~~li~~~p~~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 867 (902)
++.++..+...+. ..-++.+..++..+...+|..+.+|+++++..+...- ...+.+++....+.+..+-...|
T Consensus 713 l~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 713 LHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCH
T ss_conf 999999857998872077889999999998688976755899999999986536660799999999999998691
Done!