Query 002597
Match_columns 902
No_of_seqs 284 out of 1598
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 16:50:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002597.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1314-1318//hhsearch_pdb/002597hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gne_A Histone-lysine N-methyl 1.0 1 1 131.2 6.7 91 712-819 9-101 (107)
2 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 130.9 7.7 93 715-821 4-102 (111)
3 2kwj_A Zinc finger protein DPF 1.0 1 1 130.3 3.7 93 719-825 2-110 (114)
4 3ask_A E3 ubiquitin-protein li 1.0 1 1 124.1 6.2 152 609-817 66-220 (226)
5 3v43_A Histone acetyltransfera 1.0 1 1 124.0 4.5 92 717-821 4-110 (112)
6 3u5n_A E3 ubiquitin-protein li 1.0 1 1 103.4 4.1 49 713-761 2-52 (207)
7 2lbm_A Transcriptional regulat 1.0 1 1 102.9 4.2 99 642-762 9-116 (142)
8 3o36_A Transcription intermedi 1.0 1 1 100.5 4.7 47 716-762 2-50 (184)
9 1fp0_A KAP-1 corepressor; PHD 1.0 1 1 93.3 5.2 50 713-762 20-71 (88)
10 2ro1_A Transcription intermedi 1.0 1 1 93.1 4.6 47 717-763 1-49 (189)
No 1
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=1.00 E-value=1 Score=131.22 Aligned_cols=91 Identities=31% Similarity=0.745 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89999988675458999706408--9999788754677779999878986521113789999977998898642637863
Q 002597 712 DGDDPNDDTCGICGDGGDLICCD--GCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMC 789 (902)
Q Consensus 712 dged~ndD~C~VCgdGGeLLcCD--~CpraFH~~CL~p~~vP~g~W~Cp~C~C~~CG~~~~d~~eed~~S~~~LL~CdQC 789 (902)
++...++++|.+|+++|+||+|| .||++||+.||++..+|.+.|+||.|.|..|+.... +.|..|
T Consensus 9 ~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k~~~-------------~~C~~C 75 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAV-------------SFCEFC 75 (107)
T ss_dssp -CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCSBCC-------------EECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-------------CCCCCC
T ss_conf 8868897999847997847577999999265225186875799888898999881779898-------------674778
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 344200011211223225699756141884
Q 002597 790 EKKYHKLCMQEMDALSDNLTGLVTSFCGRK 819 (902)
Q Consensus 790 erkYHv~CLkp~~~l~l~~~~s~~WFCs~~ 819 (902)
..+||..|+.. .+...+...|+|+.+
T Consensus 76 p~sfC~~c~~g----~l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 76 PHSFCKDHEKG----ALVPSALEGRLCCSE 101 (107)
T ss_dssp SCEECTTTCTT----SCEECTTTTCEECTT
T ss_pred CCCHHHHCCCC----CCEECCCCCCEECCC
T ss_conf 71011211587----311027889666677
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=130.90 Aligned_cols=93 Identities=35% Similarity=0.911 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCCCCE---EEECCCCCCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 9998867545899970---6408999978875467777--999987898652-111378999997799889864263786
Q 002597 715 DPNDDTCGICGDGGDL---ICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCT-CKFCGLAGEDDAEGDDTTTSALLPCAM 788 (902)
Q Consensus 715 d~ndD~C~VCgdGGeL---LcCD~CpraFH~~CL~p~~--vP~g~W~Cp~C~-C~~CG~~~~d~~eed~~S~~~LL~CdQ 788 (902)
+.++++|.+|+++|++ |+|+.|+++||+.||+++. ++.+.|+|+.|. |.+|+..+.+ ..|+.|++
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ll~Cd~ 74 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGED---------SKMLVCDT 74 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCC---------TTEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEEECCC
T ss_conf 899799957899888758859999997739677088655445668658767826234765898---------77658999
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 334420001121122322569975614188422
Q 002597 789 CEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (902)
Q Consensus 789 CerkYHv~CLkp~~~l~l~~~~s~~WFCs~~C~ 821 (902)
|+++||..|+.+ ++...+.+.|||+ .|.
T Consensus 75 C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~ 102 (111)
T 2ysm_A 75 CDKGYHTFCLQP----VMKSVPTNGWKCK-NCR 102 (111)
T ss_dssp SCCEEEGGGSSS----CCSSCCSSCCCCH-HHH
T ss_pred CCCHHHHHHCCC----CCCCCCCCCCCCC-CCC
T ss_conf 980886986587----6566889882992-882
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=130.31 Aligned_cols=93 Identities=28% Similarity=0.711 Sum_probs=75.2
Q ss_pred CCCCCCCC----------CCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86754589----------9970640899997887546777-----799998789865-2111378999997799889864
Q 002597 719 DTCGICGD----------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTSA 782 (902)
Q Consensus 719 D~C~VCgd----------GGeLLcCD~CpraFH~~CL~p~-----~vP~g~W~Cp~C-~C~~CG~~~~d~~eed~~S~~~ 782 (902)
++|.+|.. +++||+|+.|+++||+.||+++ .+|.+.|+|+.| .|.+|+....+ ..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~---------~~ 72 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSEND---------DQ 72 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTT---------TT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 808658897534446799999869298998323213878466431168775175662733756346888---------74
Q ss_pred EEECCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHH
Q ss_conf 2637863344200011211223225699756141884223488
Q 002597 783 LLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSE 825 (902)
Q Consensus 783 LL~CdQCerkYHv~CLkp~~~l~l~~~~s~~WFCs~~C~eI~e 825 (902)
|+.|+.|+++||..|+.| ++...|.+.|||+ .|...+.
T Consensus 73 ll~Cd~C~~~yH~~Cl~p----pl~~~P~g~W~C~-~C~~~~~ 110 (114)
T 2kwj_A 73 LLFCDDCDRGYHMYCLNP----PVAEPPEGSWSCH-LCWELLK 110 (114)
T ss_dssp EEECSSSCCEEETTTSSS----CCSSCCSSCCCCH-HHHHHHH
T ss_pred EEECCCCCCCCCCCCCCC----CCCCCCCCCEECC-CCCCHHH
T ss_conf 577489894102504598----7467889781992-4103442
No 4
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=124.13 Aligned_cols=152 Identities=20% Similarity=0.355 Sum_probs=83.7
Q ss_pred CCCCHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCCEECCCCCCCCCCEEEEECCCCCHH
Q ss_conf 88611343411492011565887304565114453562499201788842202100002488544676147606994144
Q 002597 609 GKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLL 688 (902)
Q Consensus 609 ~krTVLswLID~G~V~~~~kV~Y~n~k~~~vlLeG~It~dGI~C~CC~kvfSpSeFE~HAG~k~rrPY~nI~LedG~SLl 688 (902)
++|+.+.| .-+....++|+|++-..+..+|++..+-| -......+.+.++++|+|+ |.+|.
T Consensus 66 rar~~~~~-----~~l~~g~~vm~nyn~~~~~~~G~~y~~~I-------------~~~~~~r~~~~~~a~i~l~-g~sl~ 126 (226)
T 3ask_A 66 RARTIIKW-----QDLEVGQVVMLNYNPDNPKERGFWYDAEI-------------SRKRETRTARELYANVVLG-DDSLN 126 (226)
T ss_dssp CCCCBCCG-----GGCCTTCEEEEEECTTSTTSCCEEEEEEE-------------EEEEECSSCEEEEEEEECS-SSEEE
T ss_pred CCCCCCCC-----CCCCCCCEEEEECCCCCCCCCCCEEEHHH-------------HHHHHCCCCCCEEEEEEEC-CCCCC
T ss_conf 30024780-----01564729998346688553673542554-------------3134023312224688766-87543
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66577531011122358755677899--9998867545899970640899997887546777799998789865211137
Q 002597 689 QCQIDAWNKLKESESIGFESVDVDGD--DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCG 766 (902)
Q Consensus 689 dC~IeAwnkqe~sEk~G~~~V~~dge--d~ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~~vP~g~W~Cp~C~C~~CG 766 (902)
+|++.+......+|..+......++. ..++..|..|. +...|.|..|.|..|+
T Consensus 127 ~c~i~f~~e~~~ie~~~~~~~~~~~~~~r~~~~~C~~c~-------------------------~~~~w~C~~c~C~vC~ 181 (226)
T 3ask_A 127 DCRIIFVDEVFKIERPGEGSPMVDNPMRRKSGPSCKHCK-------------------------DDVNRLCRVCACHLCG 181 (226)
T ss_dssp EEEESCTTCCBCCCCSSSSCCCCSCCCCCCCSCCCTTTT-------------------------TCTTSCCTTTSCSSSC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCCCEECCCCCCCCCC
T ss_conf 415787314332113355533334633345786443235-------------------------7867766888886889
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCC-CEEEC
Q ss_conf 8999997799889864263786334420001121122322569975-61418
Q 002597 767 LAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLV-TSFCG 817 (902)
Q Consensus 767 ~~~~d~~eed~~S~~~LL~CdQCerkYHv~CLkp~~~l~l~~~~s~-~WFCs 817 (902)
..... ..|+.|+.|+++||..||.| ++...|.+ .|||+
T Consensus 182 ~~~~~---------~~lL~CD~C~~~yH~~CL~P----PL~~vP~G~~W~Cp 220 (226)
T 3ask_A 182 GRQDP---------DKQLMCDECDMAFHIYCLDP----PLSSVPSEDEWYCP 220 (226)
T ss_dssp CCCC-----------CCEECSSSCCEECSCC--C----CCCSCCSSSCCCCG
T ss_pred CCCCC---------CCEEECCCCCCCEECCCCCC----CCCCCCCCCCCCCC
T ss_conf 97999---------87688389994100756788----74569899887893
No 5
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=123.97 Aligned_cols=92 Identities=26% Similarity=0.643 Sum_probs=73.8
Q ss_pred CCCCCCCCCC---------CCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9886754589---------9970640899997887546777-----799998789865-211137899999779988986
Q 002597 717 NDDTCGICGD---------GGDLICCDGCPSTFHQSCLDIQ-----MLPPGDWHCPNC-TCKFCGLAGEDDAEGDDTTTS 781 (902)
Q Consensus 717 ndD~C~VCgd---------GGeLLcCD~CpraFH~~CL~p~-----~vP~g~W~Cp~C-~C~~CG~~~~d~~eed~~S~~ 781 (902)
+.++|.+|.. +++||.|+.|+++||++||++. .++.+.|+|+.| .|.+|+..+.+. .
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~--------~ 75 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNA--------D 75 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTT--------C
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------C
T ss_conf 67613103893342768991116375344998897035388899987542465301177544666868885--------6
Q ss_pred CEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCH
Q ss_conf 4263786334420001121122322569975614188422
Q 002597 782 ALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQ 821 (902)
Q Consensus 782 ~LL~CdQCerkYHv~CLkp~~~l~l~~~~s~~WFCs~~C~ 821 (902)
.|+.|+.|+++||..||.+ ++...|.+.|||. .|.
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p----~l~~~P~~~W~C~-~C~ 110 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDP----PLTRMPKGMWICQ-ICR 110 (112)
T ss_dssp CCEECTTTCCEECGGGCSS----CCSSCCSSCCCCT-TTS
T ss_pred CEEECCCCCCEEECCCCCC----CCCCCCCCCEECC-CCC
T ss_conf 5687489989156635899----9898999885797-878
No 6
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=103.43 Aligned_cols=49 Identities=49% Similarity=1.289 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf 999998867545899970640899997887546777--7999987898652
Q 002597 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCT 761 (902)
Q Consensus 713 ged~ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~--~vP~g~W~Cp~C~ 761 (902)
.++.+++.|.+|+++|+||+||+|+++||..||.|+ .+|.++|+|+.|.
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~ 52 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCR 52 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEE
T ss_conf 878888989888999936776999984387158999888899887868426
No 7
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=1.00 E-value=1 Score=102.87 Aligned_cols=99 Identities=24% Similarity=0.568 Sum_probs=68.5
Q ss_pred EEEEECCCCCCCCCCCEEECCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53562499201788842202100002488544676147606994144665775310111223587556778999998867
Q 002597 642 EGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTC 721 (902)
Q Consensus 642 eG~It~dGI~C~CC~kvfSpSeFE~HAG~k~rrPY~nI~LedG~SLldC~IeAwnkqe~sEk~G~~~V~~dged~ndD~C 721 (902)
+|+. ++|.|.+|...+++..+ ......|+..+.+ ...|....... ++ ..+++.++++|
T Consensus 9 ~~~~--~~i~Ct~Cg~~~~~~q~----~~~~~HPll~v~~-----C~~C~~~y~~~-------~~----~~d~Dg~~d~C 66 (142)
T 2lbm_A 9 DGLH--GIVSCTACGQQVNHFQK----DSIYRHPSLQVLI-----CKNCFKYYMSD-------DI----SRDSDGMDEQC 66 (142)
T ss_dssp SSCC--CCCBCTTTCSBSTTTCS----SSEEEETTTTEEE-----EHHHHHHHHHS-------CC----CBCTTSCBCSC
T ss_pred CCCC--CCCEECCCCCCCCCCCC----CCHHCCCCCCCCC-----CHHHHHHHHCC-------CC----EECCCCCCCEE
T ss_conf 6775--79885489986565456----6321298756642-----47789887237-------81----31688887800
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCC
Q ss_conf 5458999706408999978875467777---------9999878986521
Q 002597 722 GICGDGGDLICCDGCPSTFHQSCLDIQM---------LPPGDWHCPNCTC 762 (902)
Q Consensus 722 ~VCgdGGeLLcCD~CpraFH~~CL~p~~---------vP~g~W~Cp~C~C 762 (902)
.+|++||+|||||.||++||..||.|+. .|.++|+|+.|.+
T Consensus 67 ~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 67 RWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCCCEEECCCCCCEEEHHHCCCCCCHHHHHHCCCCCCCCEEECCCC
T ss_conf 00399984786899897312745488887366654246899988212668
No 8
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=1.00 E-value=1 Score=100.52 Aligned_cols=47 Identities=45% Similarity=1.225 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 998867545899970640899997887546777--79999878986521
Q 002597 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (902)
Q Consensus 716 ~ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~--~vP~g~W~Cp~C~C 762 (902)
+|++.|.+|+++|+||+||.|+++||..|+.|+ .+|.++|+|+.|..
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9999541179999056629999530811368987879998878925568
No 9
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=93.30 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 999998867545899970640899997887546777--79999878986521
Q 002597 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTC 762 (902)
Q Consensus 713 ged~ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~--~vP~g~W~Cp~C~C 762 (902)
..+.+++.|.+|+++|+||+||.|+++||+.|+.|+ .+|.++|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3388998183769999778899999724163289897878699767726448
No 10
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=93.06 Aligned_cols=47 Identities=30% Similarity=0.810 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 98867545899970640899997887546777--799998789865211
Q 002597 717 NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK 763 (902)
Q Consensus 717 ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~--~vP~g~W~Cp~C~C~ 763 (902)
+++.|.+|+++|+||+||.|+++||..|+.|+ .+|.++|+|+.|...
T Consensus 1 s~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9882764799994568999983331022898756689987889270477
Done!