Query 002598
Match_columns 902
No_of_seqs 101 out of 113
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 2E-182 5E-187 1570.2 61.8 712 66-902 1-712 (769)
2 TIGR02169 SMC_prok_A chromosom 98.7 0.0021 4.7E-08 78.8 52.8 48 329-376 452-499 (1164)
3 COG1196 Smc Chromosome segrega 98.5 0.011 2.4E-07 74.8 51.3 57 790-846 727-783 (1163)
4 TIGR02168 SMC_prok_B chromosom 97.9 0.014 3.1E-07 71.5 32.5 178 90-268 671-851 (1179)
5 TIGR02169 SMC_prok_A chromosom 97.9 0.14 3.1E-06 63.3 56.3 42 85-126 233-274 (1164)
6 PF05911 DUF869: Plant protein 97.8 0.18 4E-06 61.8 44.5 211 605-886 497-717 (769)
7 KOG0161 Myosin class II heavy 97.6 0.052 1.1E-06 71.6 32.0 86 196-281 1608-1697(1930)
8 COG1196 Smc Chromosome segrega 97.4 0.92 2E-05 58.1 49.8 103 798-900 833-935 (1163)
9 PF07888 CALCOCO1: Calcium bin 97.4 0.58 1.3E-05 55.6 33.1 43 87-129 148-190 (546)
10 PF09726 Macoilin: Transmembra 97.3 0.045 9.7E-07 66.4 24.9 79 86-165 422-503 (697)
11 TIGR02168 SMC_prok_B chromosom 97.3 0.78 1.7E-05 56.7 57.9 31 87-117 230-260 (1179)
12 PF12128 DUF3584: Protein of u 97.3 0.48 1E-05 60.8 33.8 137 39-175 599-750 (1201)
13 KOG0161 Myosin class II heavy 97.2 1.1 2.3E-05 60.0 36.0 110 792-901 1715-1846(1930)
14 PRK02224 chromosome segregatio 97.1 1.3 2.7E-05 54.6 37.4 150 79-228 241-399 (880)
15 PF07888 CALCOCO1: Calcium bin 97.0 0.72 1.6E-05 54.9 29.4 44 77-120 194-237 (546)
16 TIGR00606 rad50 rad50. This fa 97.0 1.6 3.5E-05 56.6 35.0 58 328-387 1071-1128(1311)
17 KOG0612 Rho-associated, coiled 96.9 2 4.3E-05 54.9 33.4 69 196-267 620-693 (1317)
18 TIGR00606 rad50 rad50. This fa 96.9 2.6 5.6E-05 54.8 36.9 38 89-126 744-781 (1311)
19 KOG4674 Uncharacterized conser 96.9 2.8 6.2E-05 55.7 35.6 223 40-271 539-821 (1822)
20 PRK04778 septation ring format 96.8 1.1 2.3E-05 53.3 29.0 143 146-288 306-453 (569)
21 PF00261 Tropomyosin: Tropomyo 96.8 0.52 1.1E-05 50.0 23.6 169 83-271 30-220 (237)
22 PF10174 Cast: RIM-binding pro 96.7 0.49 1.1E-05 58.4 26.1 144 45-195 341-503 (775)
23 KOG0977 Nuclear envelope prote 96.7 0.14 3.1E-06 60.5 20.7 192 58-273 148-367 (546)
24 PF00038 Filament: Intermediat 96.6 1.2 2.6E-05 48.2 25.6 89 83-172 48-139 (312)
25 PRK02224 chromosome segregatio 96.5 3.5 7.5E-05 50.8 35.0 85 184-268 508-592 (880)
26 KOG0996 Structural maintenance 96.4 5.2 0.00011 51.3 45.5 117 785-901 906-1022(1293)
27 KOG4673 Transcription factor T 96.2 0.73 1.6E-05 55.7 22.4 161 117-295 446-621 (961)
28 PF05557 MAD: Mitotic checkpoi 96.2 0.024 5.2E-07 68.4 10.8 127 198-355 502-636 (722)
29 PRK11637 AmiB activator; Provi 96.1 1.3 2.7E-05 50.7 23.2 37 87-123 94-130 (428)
30 PRK11637 AmiB activator; Provi 96.1 2.8 6E-05 48.0 25.6 20 253-272 231-250 (428)
31 KOG0977 Nuclear envelope prote 95.9 5.6 0.00012 47.7 32.1 277 45-365 40-361 (546)
32 KOG0250 DNA repair protein RAD 95.9 4.3 9.2E-05 51.6 27.6 138 92-229 277-431 (1074)
33 PF15254 CCDC14: Coiled-coil d 95.9 0.24 5.2E-06 60.3 16.6 80 146-225 444-534 (861)
34 PF09755 DUF2046: Uncharacteri 95.8 4.4 9.6E-05 45.5 26.5 154 92-273 37-203 (310)
35 PF04849 HAP1_N: HAP1 N-termin 95.6 0.91 2E-05 50.7 18.8 137 45-182 95-266 (306)
36 PF00038 Filament: Intermediat 95.4 5.2 0.00011 43.4 30.1 39 81-119 95-133 (312)
37 PHA02562 46 endonuclease subun 95.3 4 8.7E-05 47.4 23.7 24 91-114 215-238 (562)
38 PF12128 DUF3584: Protein of u 95.3 14 0.00031 47.9 38.0 51 329-379 611-661 (1201)
39 PF10174 Cast: RIM-binding pro 95.1 13 0.00027 46.6 29.7 168 107-275 187-391 (775)
40 PRK03918 chromosome segregatio 95.1 12 0.00026 46.0 35.2 40 88-127 192-231 (880)
41 PF00261 Tropomyosin: Tropomyo 95.1 5.8 0.00012 42.2 22.5 40 86-125 68-107 (237)
42 PF05701 WEMBL: Weak chloropla 94.9 11 0.00024 44.8 35.6 53 182-234 208-263 (522)
43 KOG0980 Actin-binding protein 94.8 8.1 0.00018 48.4 24.7 71 182-253 463-533 (980)
44 KOG0996 Structural maintenance 94.7 6.1 0.00013 50.7 23.9 94 785-878 948-1041(1293)
45 PF09787 Golgin_A5: Golgin sub 94.6 13 0.00028 44.0 25.4 52 176-229 244-297 (511)
46 PF15070 GOLGA2L5: Putative go 94.4 6 0.00013 48.1 22.5 222 119-377 2-247 (617)
47 PRK04863 mukB cell division pr 94.4 6.6 0.00014 52.1 24.3 98 790-887 1003-1112(1486)
48 PF05667 DUF812: Protein of un 94.2 11 0.00023 45.9 23.9 112 84-195 323-478 (594)
49 smart00787 Spc7 Spc7 kinetocho 94.2 3.1 6.8E-05 46.5 18.3 19 67-85 119-138 (312)
50 PF15619 Lebercilin: Ciliary p 94.1 9 0.00019 40.3 21.1 103 154-272 86-188 (194)
51 KOG2991 Splicing regulator [RN 94.0 8.7 0.00019 42.5 20.4 191 89-279 115-316 (330)
52 PHA02562 46 endonuclease subun 94.0 16 0.00034 42.7 25.5 61 176-236 335-395 (562)
53 COG1579 Zn-ribbon protein, pos 93.9 4.4 9.5E-05 44.1 18.2 82 147-228 14-104 (239)
54 KOG4593 Mitotic checkpoint pro 93.8 22 0.00049 43.7 31.7 160 188-377 443-610 (716)
55 KOG4593 Mitotic checkpoint pro 93.7 23 0.00051 43.6 26.4 129 201-367 505-640 (716)
56 PRK04863 mukB cell division pr 93.5 19 0.0004 48.1 26.0 111 789-899 988-1110(1486)
57 PRK11281 hypothetical protein; 93.4 3.2 6.9E-05 53.4 18.7 31 243-273 222-252 (1113)
58 KOG0933 Structural maintenance 93.4 32 0.00068 44.2 33.0 191 167-377 818-1011(1174)
59 PF08614 ATG16: Autophagy prot 93.3 0.43 9.4E-06 49.1 9.1 94 785-878 80-173 (194)
60 KOG4674 Uncharacterized conser 93.3 43 0.00093 45.5 42.6 199 42-264 867-1069(1822)
61 PF13514 AAA_27: AAA domain 93.2 34 0.00074 44.1 34.1 302 45-379 630-952 (1111)
62 KOG0612 Rho-associated, coiled 93.2 37 0.0008 44.3 30.2 60 54-113 475-539 (1317)
63 PF10473 CENP-F_leu_zip: Leuci 93.1 7 0.00015 39.5 16.8 90 97-194 11-103 (140)
64 KOG0976 Rho/Rac1-interacting s 92.8 34 0.00075 43.0 26.8 175 101-291 83-303 (1265)
65 PF08614 ATG16: Autophagy prot 92.6 0.56 1.2E-05 48.3 8.8 66 154-219 113-178 (194)
66 COG1579 Zn-ribbon protein, pos 92.5 13 0.00029 40.5 19.1 47 85-131 34-80 (239)
67 PF04156 IncA: IncA protein; 92.0 5.3 0.00012 40.5 14.8 69 158-226 82-150 (191)
68 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.9 12 0.00025 36.7 16.4 125 89-223 3-129 (132)
69 PF12795 MscS_porin: Mechanose 91.8 20 0.00043 38.2 19.2 186 70-272 19-209 (240)
70 KOG0933 Structural maintenance 91.6 51 0.0011 42.4 35.3 93 793-885 787-879 (1174)
71 PF05010 TACC: Transforming ac 91.5 22 0.00048 38.0 20.6 155 47-228 23-190 (207)
72 PF08317 Spc7: Spc7 kinetochor 91.5 15 0.00033 41.0 18.8 18 68-85 125-143 (325)
73 KOG1003 Actin filament-coating 91.3 23 0.0005 37.9 20.5 124 86-228 1-124 (205)
74 PF12718 Tropomyosin_1: Tropom 91.2 17 0.00037 36.4 17.0 21 197-217 120-140 (143)
75 PF15619 Lebercilin: Ciliary p 91.1 23 0.00049 37.4 19.7 123 43-180 15-148 (194)
76 PF03148 Tektin: Tektin family 90.7 27 0.00058 40.0 20.2 71 117-187 225-295 (384)
77 TIGR00634 recN DNA repair prot 90.6 44 0.00096 39.9 22.9 124 208-379 268-391 (563)
78 PF05010 TACC: Transforming ac 90.6 4.6 0.0001 43.0 13.0 53 849-901 154-206 (207)
79 PF06160 EzrA: Septation ring 90.6 46 0.001 40.0 28.2 95 186-280 345-441 (560)
80 PF12329 TMF_DNA_bd: TATA elem 90.5 2 4.3E-05 38.7 8.8 70 154-223 2-71 (74)
81 PRK09039 hypothetical protein; 90.2 4.5 9.7E-05 45.6 13.3 116 785-900 45-181 (343)
82 KOG4807 F-actin binding protei 90.0 45 0.00098 39.0 27.2 278 46-379 244-577 (593)
83 PRK03918 chromosome segregatio 89.8 60 0.0013 40.2 38.1 35 328-362 455-489 (880)
84 PF09726 Macoilin: Transmembra 89.6 48 0.001 41.2 22.2 30 242-271 623-652 (697)
85 PF14915 CCDC144C: CCDC144C pr 89.4 42 0.00091 37.9 22.3 183 42-228 86-300 (305)
86 KOG0288 WD40 repeat protein Ti 89.2 4.5 9.8E-05 46.9 12.4 84 159-248 29-112 (459)
87 COG4942 Membrane-bound metallo 89.1 54 0.0012 38.6 24.9 79 145-230 170-248 (420)
88 PF09789 DUF2353: Uncharacteri 89.0 34 0.00073 38.9 18.7 145 91-241 11-168 (319)
89 PRK10884 SH3 domain-containing 88.9 4.1 8.8E-05 43.2 11.1 30 146-175 114-143 (206)
90 PRK09039 hypothetical protein; 88.8 47 0.001 37.7 19.9 19 154-172 113-131 (343)
91 PF01576 Myosin_tail_1: Myosin 88.8 0.13 2.7E-06 63.9 0.0 207 43-270 70-307 (859)
92 PF10473 CENP-F_leu_zip: Leuci 88.7 10 0.00022 38.2 13.2 81 810-897 27-107 (140)
93 TIGR01005 eps_transp_fam exopo 88.7 42 0.0009 41.2 21.0 33 88-120 236-268 (754)
94 KOG0963 Transcription factor/C 88.6 69 0.0015 39.3 23.6 151 82-232 171-343 (629)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.6 12 0.00027 36.6 13.4 13 887-899 108-120 (132)
96 PRK10929 putative mechanosensi 88.3 32 0.0007 44.7 20.2 29 244-272 204-232 (1109)
97 PF10186 Atg14: UV radiation r 88.2 24 0.00052 37.5 16.4 42 194-235 65-106 (302)
98 KOG0804 Cytoplasmic Zn-finger 88.1 4.7 0.0001 47.2 11.6 100 85-213 357-456 (493)
99 PF15070 GOLGA2L5: Putative go 88.0 75 0.0016 39.1 30.8 67 154-220 164-230 (617)
100 PF07106 TBPIP: Tat binding pr 87.7 12 0.00026 37.8 13.2 32 805-836 77-108 (169)
101 PF12718 Tropomyosin_1: Tropom 87.6 7.3 0.00016 39.0 11.4 49 788-836 16-64 (143)
102 KOG0971 Microtubule-associated 87.1 1E+02 0.0022 39.6 26.9 151 101-260 330-502 (1243)
103 PF15397 DUF4618: Domain of un 86.9 55 0.0012 36.3 19.7 103 141-272 122-224 (258)
104 PF08317 Spc7: Spc7 kinetochor 86.8 58 0.0013 36.5 25.5 38 256-293 252-290 (325)
105 TIGR03007 pepcterm_ChnLen poly 86.8 49 0.0011 38.4 19.1 34 190-223 315-348 (498)
106 TIGR03185 DNA_S_dndD DNA sulfu 86.4 88 0.0019 38.1 25.5 28 326-353 392-419 (650)
107 PF04156 IncA: IncA protein; 86.2 18 0.00038 36.8 13.6 42 800-841 81-122 (191)
108 KOG1937 Uncharacterized conser 85.8 82 0.0018 37.6 19.8 161 68-270 248-411 (521)
109 KOG4673 Transcription factor T 85.4 1.1E+02 0.0024 38.3 33.6 287 43-361 426-772 (961)
110 PF13851 GAS: Growth-arrest sp 85.3 54 0.0012 34.6 19.1 137 92-261 12-149 (201)
111 KOG0963 Transcription factor/C 85.2 1E+02 0.0023 37.9 32.8 45 328-373 313-357 (629)
112 TIGR01005 eps_transp_fam exopo 85.0 56 0.0012 40.2 19.3 35 98-132 189-223 (754)
113 TIGR02680 conserved hypothetic 85.0 1.4E+02 0.0031 39.8 23.8 87 49-135 232-322 (1353)
114 TIGR02680 conserved hypothetic 84.9 1.5E+02 0.0033 39.5 28.3 17 257-273 971-987 (1353)
115 PF13851 GAS: Growth-arrest sp 84.4 59 0.0013 34.3 25.8 77 201-290 109-189 (201)
116 PF00769 ERM: Ezrin/radixin/mo 84.3 36 0.00079 36.9 15.5 118 100-229 2-119 (246)
117 PF07989 Microtub_assoc: Micro 84.2 6.8 0.00015 35.6 8.4 65 203-273 4-68 (75)
118 PF05701 WEMBL: Weak chloropla 84.2 1E+02 0.0022 36.9 35.0 111 154-271 239-353 (522)
119 KOG0982 Centrosomal protein Nu 84.2 64 0.0014 38.2 17.9 42 102-143 249-290 (502)
120 PRK10246 exonuclease subunit S 84.1 1.4E+02 0.0031 38.6 27.4 30 243-272 855-884 (1047)
121 PF06818 Fez1: Fez1; InterPro 83.8 16 0.00035 39.1 12.2 51 175-225 56-106 (202)
122 KOG1029 Endocytic adaptor prot 83.6 1.4E+02 0.003 38.0 27.0 35 121-156 378-412 (1118)
123 KOG1853 LIS1-interacting prote 83.4 72 0.0016 35.6 17.0 46 70-115 25-71 (333)
124 KOG4809 Rab6 GTPase-interactin 83.2 49 0.0011 40.1 16.8 144 97-255 332-492 (654)
125 PF10186 Atg14: UV radiation r 82.9 64 0.0014 34.3 16.5 30 165-194 71-100 (302)
126 PRK10361 DNA recombination pro 82.4 1.2E+02 0.0026 36.4 22.1 127 99-226 39-178 (475)
127 KOG0995 Centromere-associated 82.3 1.3E+02 0.0028 36.8 28.6 277 68-381 169-481 (581)
128 PRK10884 SH3 domain-containing 82.3 10 0.00022 40.2 10.2 23 208-230 134-156 (206)
129 PF00769 ERM: Ezrin/radixin/mo 82.2 18 0.00039 39.2 12.2 96 791-886 3-105 (246)
130 PF05622 HOOK: HOOK protein; 81.9 0.44 9.4E-06 57.9 0.0 21 202-222 455-475 (713)
131 KOG0971 Microtubule-associated 81.7 1.7E+02 0.0037 37.7 26.8 84 152-238 271-357 (1243)
132 PRK15422 septal ring assembly 81.6 12 0.00026 34.7 9.0 70 796-872 7-76 (79)
133 PF04849 HAP1_N: HAP1 N-termin 81.4 1E+02 0.0022 35.0 25.7 86 143-228 83-189 (306)
134 PF05557 MAD: Mitotic checkpoi 81.2 0.48 1E-05 57.6 0.0 20 329-348 354-373 (722)
135 PF12329 TMF_DNA_bd: TATA elem 81.2 16 0.00036 32.9 9.6 70 811-880 2-71 (74)
136 PF14988 DUF4515: Domain of un 81.0 82 0.0018 33.6 19.3 140 114-262 8-148 (206)
137 KOG0999 Microtubule-associated 81.0 49 0.0011 40.2 15.8 68 202-271 46-123 (772)
138 TIGR03185 DNA_S_dndD DNA sulfu 80.8 1.4E+02 0.0031 36.3 27.8 201 87-293 207-435 (650)
139 KOG0804 Cytoplasmic Zn-finger 80.3 27 0.00057 41.3 13.2 110 790-900 329-444 (493)
140 PF08826 DMPK_coil: DMPK coile 80.0 13 0.00029 32.8 8.4 56 826-881 2-57 (61)
141 KOG0964 Structural maintenance 79.9 2E+02 0.0044 37.4 24.9 101 178-278 404-504 (1200)
142 PRK12704 phosphodiesterase; Pr 79.3 1.2E+02 0.0027 36.4 18.7 33 136-168 54-86 (520)
143 PF09787 Golgin_A5: Golgin sub 79.2 1.5E+02 0.0032 35.4 24.6 28 246-273 353-380 (511)
144 TIGR01843 type_I_hlyD type I s 79.2 1.1E+02 0.0024 34.0 21.9 16 254-269 252-267 (423)
145 PF15254 CCDC14: Coiled-coil d 79.1 27 0.00059 43.6 13.4 44 149-192 497-543 (861)
146 PF12325 TMF_TATA_bd: TATA ele 78.9 39 0.00084 33.4 12.1 91 808-898 17-110 (120)
147 PF10481 CENP-F_N: Cenp-F N-te 78.6 76 0.0016 35.7 15.3 108 161-278 57-196 (307)
148 PF04111 APG6: Autophagy prote 78.4 28 0.0006 39.0 12.5 51 186-236 44-94 (314)
149 PF09304 Cortex-I_coil: Cortex 78.0 30 0.00064 33.9 10.7 95 146-277 5-99 (107)
150 PF06818 Fez1: Fez1; InterPro 77.2 1.1E+02 0.0024 32.9 19.6 69 68-139 13-81 (202)
151 PF09304 Cortex-I_coil: Cortex 76.7 38 0.00083 33.1 11.1 78 817-894 12-89 (107)
152 PF07106 TBPIP: Tat binding pr 76.6 19 0.00042 36.3 9.7 20 255-274 145-164 (169)
153 PF02994 Transposase_22: L1 tr 76.4 5 0.00011 45.7 6.1 96 806-901 90-189 (370)
154 KOG0980 Actin-binding protein 76.4 2.4E+02 0.0052 36.4 25.8 58 78-135 329-390 (980)
155 PF03962 Mnd1: Mnd1 family; I 76.2 22 0.00047 37.2 10.2 82 201-290 64-146 (188)
156 COG0497 RecN ATPase involved i 75.9 2E+02 0.0044 35.2 24.3 122 207-380 263-388 (557)
157 COG2433 Uncharacterized conser 75.6 27 0.00059 42.6 11.9 85 809-897 424-508 (652)
158 PRK04778 septation ring format 74.8 2E+02 0.0043 34.7 31.6 54 328-381 351-404 (569)
159 KOG4643 Uncharacterized coiled 74.7 2.8E+02 0.006 36.3 23.1 102 167-274 484-600 (1195)
160 PRK01156 chromosome segregatio 74.4 2.4E+02 0.0053 35.5 29.2 21 328-348 472-492 (895)
161 PF09738 DUF2051: Double stran 73.9 31 0.00068 38.8 11.3 89 186-274 78-166 (302)
162 PF11932 DUF3450: Protein of u 73.4 1.4E+02 0.003 32.2 16.6 137 96-242 28-168 (251)
163 COG4372 Uncharacterized protei 73.2 2E+02 0.0043 34.0 19.6 51 192-242 158-209 (499)
164 PF05622 HOOK: HOOK protein; 73.0 1.1 2.5E-05 54.4 0.0 71 201-272 327-401 (713)
165 smart00787 Spc7 Spc7 kinetocho 72.2 71 0.0015 36.1 13.6 103 787-896 152-258 (312)
166 PF04111 APG6: Autophagy prote 72.0 47 0.001 37.3 12.2 31 203-233 89-119 (314)
167 KOG0018 Structural maintenance 71.9 3.3E+02 0.0071 35.9 25.0 96 792-894 806-901 (1141)
168 PF14197 Cep57_CLD_2: Centroso 71.4 31 0.00067 31.0 8.6 64 818-881 2-65 (69)
169 KOG0964 Structural maintenance 71.0 3.4E+02 0.0073 35.6 24.7 93 40-132 671-763 (1200)
170 COG4026 Uncharacterized protei 70.9 20 0.00044 39.1 8.6 90 788-877 130-220 (290)
171 PF05483 SCP-1: Synaptonemal c 70.7 2.9E+02 0.0063 34.8 35.1 267 85-355 285-631 (786)
172 PRK12704 phosphodiesterase; Pr 70.3 2.5E+02 0.0055 33.9 20.8 9 86-94 35-43 (520)
173 PF03980 Nnf1: Nnf1 ; InterPr 70.1 49 0.0011 31.2 10.2 28 201-228 82-109 (109)
174 PF13870 DUF4201: Domain of un 69.8 1.3E+02 0.0029 30.6 16.9 112 96-228 6-120 (177)
175 KOG0999 Microtubule-associated 69.5 2.8E+02 0.0061 34.2 25.5 122 42-178 10-135 (772)
176 TIGR01843 type_I_hlyD type I s 69.4 83 0.0018 35.0 13.4 54 794-847 131-184 (423)
177 PF09730 BicD: Microtubule-ass 69.3 2.9E+02 0.0063 34.9 18.8 22 254-275 418-439 (717)
178 TIGR03319 YmdA_YtgF conserved 69.2 2.6E+02 0.0057 33.7 19.7 31 138-168 50-80 (514)
179 KOG0994 Extracellular matrix g 68.9 4E+02 0.0087 35.7 28.0 85 47-131 1511-1598(1758)
180 PRK10869 recombination and rep 68.6 2.7E+02 0.0059 33.7 24.6 122 207-380 262-387 (553)
181 PF09731 Mitofilin: Mitochondr 68.4 2.7E+02 0.0057 33.4 22.2 39 252-292 402-440 (582)
182 KOG0978 E3 ubiquitin ligase in 68.4 3.2E+02 0.007 34.4 26.1 118 155-273 501-619 (698)
183 PRK11281 hypothetical protein; 68.2 3.4E+02 0.0074 35.9 19.9 61 201-268 194-254 (1113)
184 KOG0250 DNA repair protein RAD 68.1 3.9E+02 0.0084 35.2 51.0 54 785-838 660-713 (1074)
185 TIGR03319 YmdA_YtgF conserved 68.0 2.8E+02 0.006 33.5 20.7 12 534-545 391-402 (514)
186 KOG0239 Kinesin (KAR3 subfamil 67.4 30 0.00064 42.8 10.1 92 806-901 181-272 (670)
187 COG1340 Uncharacterized archae 67.4 2.3E+02 0.0049 32.3 17.9 150 39-219 106-255 (294)
188 PF12325 TMF_TATA_bd: TATA ele 66.9 84 0.0018 31.1 11.3 87 186-273 17-114 (120)
189 KOG0946 ER-Golgi vesicle-tethe 66.7 3.7E+02 0.0081 34.5 24.5 162 68-232 622-798 (970)
190 PF13514 AAA_27: AAA domain 66.6 4E+02 0.0086 34.8 31.9 41 341-381 796-836 (1111)
191 PF05667 DUF812: Protein of un 66.6 3.2E+02 0.0069 33.7 23.3 180 86-271 318-514 (594)
192 KOG0288 WD40 repeat protein Ti 66.4 1.4E+02 0.0031 35.3 14.6 43 189-238 31-73 (459)
193 PF08826 DMPK_coil: DMPK coile 66.4 18 0.00039 32.0 5.9 42 794-835 12-53 (61)
194 cd00632 Prefoldin_beta Prefold 65.7 1.1E+02 0.0023 28.8 11.4 69 92-166 9-79 (105)
195 KOG4403 Cell surface glycoprot 65.7 1.2E+02 0.0026 36.1 13.8 39 136-175 239-277 (575)
196 PF07798 DUF1640: Protein of u 65.4 1.7E+02 0.0037 30.1 17.7 10 83-92 15-24 (177)
197 PF01576 Myosin_tail_1: Myosin 65.3 2.1 4.5E-05 53.6 0.0 40 88-127 411-450 (859)
198 PF14197 Cep57_CLD_2: Centroso 65.1 50 0.0011 29.7 8.6 64 198-268 4-67 (69)
199 PRK01156 chromosome segregatio 64.6 3.8E+02 0.0082 33.8 33.9 25 100-124 473-497 (895)
200 KOG0249 LAR-interacting protei 64.5 3.9E+02 0.0085 34.0 19.5 155 107-273 25-181 (916)
201 KOG1853 LIS1-interacting prote 63.8 70 0.0015 35.7 10.9 102 787-888 53-165 (333)
202 KOG4360 Uncharacterized coiled 62.6 2.9E+02 0.0062 33.8 16.2 95 121-231 202-300 (596)
203 KOG1003 Actin filament-coating 62.2 1.3E+02 0.0027 32.6 12.1 84 798-881 93-176 (205)
204 KOG1265 Phospholipase C [Lipid 62.0 2.3E+02 0.0051 36.6 16.0 72 66-144 1057-1137(1189)
205 PF10168 Nup88: Nuclear pore c 61.9 4.2E+02 0.0091 33.4 19.7 35 187-221 634-668 (717)
206 PF10205 KLRAQ: Predicted coil 61.2 63 0.0014 31.4 9.0 66 165-230 6-71 (102)
207 PF13870 DUF4201: Domain of un 61.1 97 0.0021 31.6 11.0 91 786-876 42-132 (177)
208 PF14643 DUF4455: Domain of un 60.5 3.5E+02 0.0076 32.1 17.9 129 84-216 277-421 (473)
209 PF09731 Mitofilin: Mitochondr 60.0 3.7E+02 0.0081 32.2 21.3 59 199-257 378-442 (582)
210 PF10146 zf-C4H2: Zinc finger- 59.4 1.6E+02 0.0034 32.1 12.7 32 197-228 58-89 (230)
211 KOG0994 Extracellular matrix g 59.3 5.9E+02 0.013 34.3 32.9 84 189-279 1602-1685(1758)
212 PRK03947 prefoldin subunit alp 59.3 1.7E+02 0.0037 28.6 12.0 100 800-900 6-138 (140)
213 PF09728 Taxilin: Myosin-like 58.7 3.1E+02 0.0068 31.0 26.6 66 197-269 242-307 (309)
214 PF14988 DUF4515: Domain of un 58.0 2.6E+02 0.0057 29.9 18.9 24 205-228 155-178 (206)
215 KOG4809 Rab6 GTPase-interactin 58.0 4.5E+02 0.0097 32.5 21.9 109 45-180 336-451 (654)
216 PF14662 CCDC155: Coiled-coil 57.8 2.7E+02 0.0059 30.0 18.7 150 49-205 34-192 (193)
217 PF05266 DUF724: Protein of un 57.6 1.8E+02 0.004 30.7 12.5 26 199-224 159-184 (190)
218 PF11365 DUF3166: Protein of u 57.5 65 0.0014 31.0 8.3 68 811-878 5-91 (96)
219 KOG0979 Structural maintenance 57.3 5.8E+02 0.013 33.6 21.2 38 843-880 850-887 (1072)
220 COG0419 SbcC ATPase involved i 57.2 5.2E+02 0.011 33.0 29.9 30 244-273 406-435 (908)
221 COG3074 Uncharacterized protei 56.6 99 0.0021 28.6 8.8 42 796-837 7-48 (79)
222 TIGR02132 phaR_Bmeg polyhydrox 56.4 1.3E+02 0.0028 32.1 11.0 24 104-127 80-103 (189)
223 KOG1029 Endocytic adaptor prot 56.3 5.5E+02 0.012 33.1 23.0 16 665-680 977-992 (1118)
224 PF10212 TTKRSYEDQ: Predicted 55.0 2.1E+02 0.0045 34.8 13.7 98 149-268 412-514 (518)
225 PF03148 Tektin: Tektin family 55.0 1.7E+02 0.0037 33.8 12.8 113 788-900 253-382 (384)
226 COG4913 Uncharacterized protei 54.7 5.8E+02 0.012 32.8 18.8 55 116-172 633-689 (1104)
227 KOG1962 B-cell receptor-associ 54.6 1.2E+02 0.0027 32.9 10.8 63 840-902 149-211 (216)
228 PF02601 Exonuc_VII_L: Exonucl 54.5 3.3E+02 0.0073 30.0 16.3 52 74-125 135-187 (319)
229 COG3074 Uncharacterized protei 54.2 80 0.0017 29.1 7.9 42 187-228 27-68 (79)
230 KOG0243 Kinesin-like protein [ 54.2 4E+02 0.0087 35.0 16.6 78 107-189 445-522 (1041)
231 KOG2991 Splicing regulator [RN 53.8 3.8E+02 0.0081 30.4 19.1 146 83-228 137-307 (330)
232 PF08702 Fib_alpha: Fibrinogen 53.6 2E+02 0.0044 29.2 11.6 35 854-888 102-136 (146)
233 COG2433 Uncharacterized conser 53.1 1.6E+02 0.0034 36.5 12.4 20 252-271 492-511 (652)
234 PF15450 DUF4631: Domain of un 52.9 5.2E+02 0.011 31.7 24.0 207 46-278 307-516 (531)
235 KOG4787 Uncharacterized conser 52.9 5.5E+02 0.012 32.1 20.6 203 83-301 333-568 (852)
236 PF06005 DUF904: Protein of un 52.7 1.1E+02 0.0025 27.7 8.7 45 796-840 7-51 (72)
237 KOG0249 LAR-interacting protei 52.3 6.1E+02 0.013 32.4 19.8 24 48-74 88-111 (916)
238 KOG0239 Kinesin (KAR3 subfamil 51.9 5.8E+02 0.013 32.0 20.0 32 197-228 239-270 (670)
239 TIGR03017 EpsF chain length de 51.9 4.2E+02 0.0091 30.3 19.8 28 105-132 173-200 (444)
240 TIGR02449 conserved hypothetic 51.2 80 0.0017 28.5 7.4 59 154-212 4-62 (65)
241 TIGR02231 conserved hypothetic 50.5 1.1E+02 0.0023 36.3 10.7 30 90-119 72-101 (525)
242 KOG2629 Peroxisomal membrane a 50.5 75 0.0016 35.9 8.7 70 200-279 130-201 (300)
243 COG3883 Uncharacterized protei 50.5 54 0.0012 36.5 7.6 64 786-849 38-101 (265)
244 PF10226 DUF2216: Uncharacteri 50.4 3.1E+02 0.0068 29.6 12.7 99 161-262 20-122 (195)
245 PF14992 TMCO5: TMCO5 family 49.7 4.3E+02 0.0092 30.0 14.2 63 157-226 63-136 (280)
246 PF10168 Nup88: Nuclear pore c 49.6 1.3E+02 0.0029 37.6 11.5 82 212-293 564-646 (717)
247 COG3883 Uncharacterized protei 49.4 4.3E+02 0.0093 29.7 21.1 147 42-219 47-217 (265)
248 PF11559 ADIP: Afadin- and alp 49.0 2.8E+02 0.0061 27.5 14.3 13 258-270 136-148 (151)
249 PF14073 Cep57_CLD: Centrosome 48.7 3.6E+02 0.0079 28.7 14.9 18 254-271 119-136 (178)
250 PLN02939 transferase, transfer 48.7 7.7E+02 0.017 32.5 23.6 116 98-229 158-280 (977)
251 PF12761 End3: Actin cytoskele 48.4 1.2E+02 0.0025 32.6 9.4 28 145-174 93-120 (195)
252 PF10146 zf-C4H2: Zinc finger- 48.3 2.5E+02 0.0055 30.6 12.1 73 817-889 28-100 (230)
253 COG4026 Uncharacterized protei 48.0 2.1E+02 0.0046 31.6 11.3 70 154-237 132-204 (290)
254 KOG4572 Predicted DNA-binding 47.6 7.6E+02 0.016 32.1 16.9 17 415-431 1130-1146(1424)
255 PF10212 TTKRSYEDQ: Predicted 46.7 1.5E+02 0.0032 36.0 10.8 93 785-880 419-511 (518)
256 TIGR01000 bacteriocin_acc bact 46.5 5.4E+02 0.012 30.1 20.6 20 252-271 288-307 (457)
257 KOG1899 LAR transmembrane tyro 45.9 1.2E+02 0.0027 37.5 10.0 98 785-889 110-210 (861)
258 PF04012 PspA_IM30: PspA/IM30 45.9 3.8E+02 0.0081 28.1 22.9 179 52-271 10-188 (221)
259 PF11932 DUF3450: Protein of u 45.5 2.2E+02 0.0047 30.6 11.1 28 820-847 55-82 (251)
260 PF07989 Microtub_assoc: Micro 45.3 1.6E+02 0.0036 26.9 8.6 61 161-234 4-64 (75)
261 cd00632 Prefoldin_beta Prefold 45.1 2.7E+02 0.0059 26.2 11.6 49 849-897 56-104 (105)
262 TIGR03752 conj_TIGR03752 integ 45.0 95 0.0021 37.1 8.9 67 200-272 67-133 (472)
263 PRK00106 hypothetical protein; 44.7 6.8E+02 0.015 30.7 20.0 22 138-159 71-92 (535)
264 PF07246 Phlebovirus_NSM: Phle 44.5 1.9E+02 0.0041 32.4 10.5 64 689-777 77-141 (264)
265 PRK09841 cryptic autophosphory 44.1 4E+02 0.0087 33.2 14.5 16 244-259 380-395 (726)
266 PF00170 bZIP_1: bZIP transcri 43.8 62 0.0013 27.9 5.5 21 202-222 43-63 (64)
267 PF12072 DUF3552: Domain of un 43.5 4.2E+02 0.009 27.9 20.3 75 115-196 29-103 (201)
268 PF10498 IFT57: Intra-flagella 43.3 3.2E+02 0.0069 31.7 12.5 69 159-230 236-304 (359)
269 KOG4403 Cell surface glycoprot 42.9 6.8E+02 0.015 30.3 16.4 52 71-122 241-292 (575)
270 PF05837 CENP-H: Centromere pr 42.8 1.9E+02 0.0041 27.7 9.1 61 200-268 11-71 (106)
271 TIGR02231 conserved hypothetic 42.7 1.1E+02 0.0023 36.3 9.1 37 785-821 70-106 (525)
272 PF15188 CCDC-167: Coiled-coil 42.4 49 0.0011 31.2 5.0 64 110-175 5-68 (85)
273 PF05700 BCAS2: Breast carcino 42.4 4.6E+02 0.0099 28.1 14.8 68 202-269 132-203 (221)
274 KOG1655 Protein involved in va 42.1 39 0.00084 36.3 4.7 37 243-279 21-57 (218)
275 PF05700 BCAS2: Breast carcino 42.1 4.6E+02 0.01 28.0 15.6 80 146-228 132-211 (221)
276 smart00502 BBC B-Box C-termina 42.0 2.7E+02 0.006 25.4 12.8 81 809-889 9-98 (127)
277 KOG2685 Cystoskeletal protein 41.9 6.5E+02 0.014 30.1 14.7 48 137-184 272-319 (421)
278 PF07851 TMPIT: TMPIT-like pro 41.8 1.3E+02 0.0029 34.5 9.2 89 805-893 2-91 (330)
279 PF05278 PEARLI-4: Arabidopsis 41.8 5.1E+02 0.011 29.2 13.3 98 75-178 152-249 (269)
280 PF00804 Syntaxin: Syntaxin; 41.2 1.4E+02 0.003 26.6 7.6 90 253-371 12-101 (103)
281 KOG3119 Basic region leucine z 40.4 51 0.0011 36.3 5.6 31 202-232 218-248 (269)
282 TIGR01000 bacteriocin_acc bact 40.2 5.6E+02 0.012 30.0 14.1 9 48-56 98-106 (457)
283 PF03962 Mnd1: Mnd1 family; I 40.2 3.6E+02 0.0079 28.3 11.5 33 90-122 63-95 (188)
284 PF12761 End3: Actin cytoskele 40.0 1.3E+02 0.0029 32.2 8.3 34 326-359 161-194 (195)
285 PF15456 Uds1: Up-regulated Du 39.8 4E+02 0.0086 26.6 11.0 76 89-166 22-111 (124)
286 PF07798 DUF1640: Protein of u 39.8 4.4E+02 0.0096 27.1 16.6 112 146-277 47-160 (177)
287 PF06637 PV-1: PV-1 protein (P 39.5 5.9E+02 0.013 30.3 13.7 35 121-163 339-373 (442)
288 KOG1962 B-cell receptor-associ 39.4 1.8E+02 0.004 31.6 9.3 62 155-230 149-210 (216)
289 KOG3433 Protein involved in me 39.3 2E+02 0.0043 31.0 9.2 65 823-887 83-147 (203)
290 KOG0976 Rho/Rac1-interacting s 39.2 1E+03 0.022 31.1 32.3 74 77-150 125-202 (1265)
291 KOG3809 Microtubule-binding pr 38.8 4.4E+02 0.0096 31.8 12.7 114 91-222 449-562 (583)
292 PF04065 Not3: Not1 N-terminal 38.5 1.7E+02 0.0037 32.0 9.0 87 792-880 37-146 (233)
293 PF10481 CENP-F_N: Cenp-F N-te 38.4 6.6E+02 0.014 28.7 14.8 19 255-273 109-127 (307)
294 KOG3215 Uncharacterized conser 38.2 5.8E+02 0.013 28.0 16.6 147 62-218 27-183 (222)
295 PF07889 DUF1664: Protein of u 38.0 1.4E+02 0.0031 29.9 7.7 52 821-879 68-119 (126)
296 smart00502 BBC B-Box C-termina 37.9 3.2E+02 0.0069 25.0 16.0 66 94-170 5-70 (127)
297 KOG0982 Centrosomal protein Nu 37.8 8.1E+02 0.018 29.6 16.6 152 63-227 259-424 (502)
298 PLN03188 kinesin-12 family pro 37.6 1.2E+03 0.027 31.6 21.0 68 208-278 1175-1260(1320)
299 PF03961 DUF342: Protein of un 37.6 1.2E+02 0.0025 35.5 8.2 72 810-882 337-408 (451)
300 cd07598 BAR_FAM92 The Bin/Amph 37.5 5.5E+02 0.012 27.6 18.6 102 103-223 4-107 (211)
301 PF06156 DUF972: Protein of un 37.5 82 0.0018 30.6 5.8 47 187-233 10-56 (107)
302 PF01920 Prefoldin_2: Prefoldi 37.5 2.5E+02 0.0054 25.6 8.8 30 852-881 65-94 (106)
303 PF12808 Mto2_bdg: Micro-tubul 37.4 76 0.0016 27.5 4.9 30 197-226 20-49 (52)
304 PF10304 DUF2411: Domain of un 37.3 24 0.00053 28.0 1.9 23 62-84 14-36 (36)
305 PF15035 Rootletin: Ciliary ro 37.1 5.3E+02 0.011 27.2 14.9 82 204-292 86-179 (182)
306 KOG0244 Kinesin-like protein [ 37.0 3E+02 0.0064 35.6 11.8 89 194-290 504-608 (913)
307 PF09730 BicD: Microtubule-ass 36.7 1E+03 0.022 30.4 28.8 42 95-136 19-60 (717)
308 PF09325 Vps5: Vps5 C terminal 36.6 5E+02 0.011 26.9 21.6 83 46-131 30-125 (236)
309 TIGR00998 8a0101 efflux pump m 36.5 4.1E+02 0.0089 29.0 11.7 55 796-850 83-137 (334)
310 PRK00409 recombination and DNA 36.5 6.9E+02 0.015 31.8 15.0 20 145-164 543-562 (782)
311 PF06637 PV-1: PV-1 protein (P 36.4 8.1E+02 0.018 29.2 29.4 84 165-271 264-347 (442)
312 PRK09343 prefoldin subunit bet 36.2 3.8E+02 0.0081 26.3 10.2 25 852-876 74-98 (121)
313 PF15066 CAGE1: Cancer-associa 36.0 8.9E+02 0.019 29.6 18.7 88 146-236 386-508 (527)
314 KOG4031 Vesicle coat protein c 35.9 1.5E+02 0.0032 32.3 7.8 50 124-173 106-159 (216)
315 PF02183 HALZ: Homeobox associ 35.8 59 0.0013 27.1 3.9 28 201-228 14-41 (45)
316 PRK11519 tyrosine kinase; Prov 35.8 3.6E+02 0.0079 33.5 12.3 45 796-840 256-300 (719)
317 PF05377 FlaC_arch: Flagella a 35.8 1.5E+02 0.0033 26.0 6.5 42 811-852 4-45 (55)
318 TIGR01010 BexC_CtrB_KpsE polys 35.8 6.8E+02 0.015 28.2 14.6 64 104-170 171-234 (362)
319 PF06148 COG2: COG (conserved 35.6 29 0.00063 33.8 2.5 30 146-175 26-55 (133)
320 TIGR02338 gimC_beta prefoldin, 35.5 4E+02 0.0087 25.4 10.5 32 850-881 68-99 (110)
321 KOG0243 Kinesin-like protein [ 35.5 3.9E+02 0.0084 35.2 12.6 58 668-725 325-409 (1041)
322 PF05483 SCP-1: Synaptonemal c 35.0 1.1E+03 0.023 30.2 35.1 84 145-228 547-630 (786)
323 PF07200 Mod_r: Modifier of ru 34.3 2.9E+02 0.0063 27.2 9.3 87 806-893 6-92 (150)
324 TIGR01837 PHA_granule_1 poly(h 33.9 1.6E+02 0.0036 28.7 7.3 39 127-165 51-89 (118)
325 PF05266 DUF724: Protein of un 33.8 5.3E+02 0.012 27.4 11.5 30 852-881 155-184 (190)
326 PRK13729 conjugal transfer pil 33.7 1.3E+02 0.0027 36.2 7.6 33 813-845 68-100 (475)
327 PF05335 DUF745: Protein of un 33.4 6.2E+02 0.013 27.0 12.8 93 809-901 69-161 (188)
328 PRK00106 hypothetical protein; 33.4 9.9E+02 0.022 29.4 22.3 9 536-544 414-422 (535)
329 PF05103 DivIVA: DivIVA protei 33.3 32 0.00068 32.7 2.3 40 96-135 39-78 (131)
330 PF02841 GBP_C: Guanylate-bind 33.2 7.1E+02 0.015 27.6 14.3 120 98-226 178-297 (297)
331 PF04899 MbeD_MobD: MbeD/MobD 33.1 3.8E+02 0.0083 24.5 8.9 44 138-181 16-59 (70)
332 PRK10476 multidrug resistance 32.7 7.3E+02 0.016 27.6 13.5 84 794-877 87-180 (346)
333 PF07889 DUF1664: Protein of u 32.7 5.3E+02 0.012 26.0 11.5 32 187-218 91-122 (126)
334 PF03670 UPF0184: Uncharacteri 32.5 1.3E+02 0.0027 28.5 5.9 48 88-135 25-72 (83)
335 PF09311 Rab5-bind: Rabaptin-l 32.2 34 0.00075 35.3 2.6 67 187-274 10-76 (181)
336 COG4717 Uncharacterized conser 31.9 1.3E+03 0.028 30.3 20.0 115 140-256 727-853 (984)
337 KOG1854 Mitochondrial inner me 31.8 1.1E+03 0.025 29.6 17.2 88 71-162 342-431 (657)
338 PF07716 bZIP_2: Basic region 31.7 1.1E+02 0.0023 25.8 5.0 29 200-228 26-54 (54)
339 PF07321 YscO: Type III secret 31.7 5.2E+02 0.011 26.7 10.7 79 45-131 16-102 (152)
340 KOG3433 Protein involved in me 31.6 6E+02 0.013 27.5 11.3 86 148-247 79-165 (203)
341 PRK12705 hypothetical protein; 31.4 1E+03 0.023 29.0 19.3 39 131-169 44-82 (508)
342 TIGR02338 gimC_beta prefoldin, 31.4 3.6E+02 0.0079 25.7 9.1 41 850-890 61-101 (110)
343 PF06810 Phage_GP20: Phage min 31.3 4.7E+02 0.01 26.8 10.3 86 82-186 20-111 (155)
344 PF02183 HALZ: Homeobox associ 31.3 1.1E+02 0.0024 25.5 4.9 38 196-233 2-39 (45)
345 PF05529 Bap31: B-cell recepto 31.0 1.6E+02 0.0035 30.3 7.2 29 186-214 162-190 (192)
346 PF07139 DUF1387: Protein of u 31.0 6.5E+02 0.014 28.9 12.2 79 114-195 154-235 (302)
347 PF09766 FimP: Fms-interacting 31.0 8.7E+02 0.019 27.9 13.9 44 81-124 11-54 (355)
348 TIGR03495 phage_LysB phage lys 30.9 2.8E+02 0.006 28.3 8.5 37 183-219 59-95 (135)
349 PF09755 DUF2046: Uncharacteri 30.7 8.9E+02 0.019 28.0 29.3 132 71-209 55-202 (310)
350 PRK14127 cell division protein 30.7 1.1E+02 0.0024 30.0 5.5 16 249-264 86-101 (109)
351 PF13166 AAA_13: AAA domain 30.6 1.1E+03 0.023 28.9 20.9 41 252-295 435-475 (712)
352 PF13863 DUF4200: Domain of un 30.2 4.8E+02 0.011 24.8 13.3 62 212-273 38-99 (126)
353 cd00176 SPEC Spectrin repeats, 30.0 5.2E+02 0.011 25.1 19.0 36 133-168 73-108 (213)
354 PF14932 HAUS-augmin3: HAUS au 29.9 3.2E+02 0.0069 29.9 9.5 40 820-859 67-106 (256)
355 PRK15422 septal ring assembly 29.9 3.1E+02 0.0067 25.8 7.9 31 197-227 37-67 (79)
356 PRK13455 F0F1 ATP synthase sub 29.9 6.3E+02 0.014 26.0 13.4 39 113-151 75-113 (184)
357 TIGR00998 8a0101 efflux pump m 29.8 7.7E+02 0.017 26.9 13.9 12 146-157 146-157 (334)
358 COG4985 ABC-type phosphate tra 29.8 3.6E+02 0.0078 30.1 9.6 83 796-880 160-245 (289)
359 PRK11519 tyrosine kinase; Prov 29.6 1.2E+03 0.026 29.1 17.4 29 104-132 268-296 (719)
360 PF06785 UPF0242: Uncharacteri 29.1 7.2E+02 0.016 29.1 12.1 119 47-169 102-220 (401)
361 PF04645 DUF603: Protein of un 28.8 4.4E+02 0.0096 28.1 9.7 20 870-889 138-157 (181)
362 PF13094 CENP-Q: CENP-Q, a CEN 28.4 2.1E+02 0.0045 28.8 7.2 28 825-852 31-58 (160)
363 KOG0163 Myosin class VI heavy 28.3 1.4E+03 0.031 29.7 15.3 83 57-144 868-954 (1259)
364 PF04728 LPP: Lipoprotein leuc 28.2 3.9E+02 0.0085 23.7 7.8 52 801-852 4-55 (56)
365 PF06810 Phage_GP20: Phage min 28.1 5.9E+02 0.013 26.1 10.4 46 170-219 26-71 (155)
366 PF06008 Laminin_I: Laminin Do 27.8 8.1E+02 0.017 26.6 18.7 174 189-375 28-214 (264)
367 PF12004 DUF3498: Domain of un 27.8 20 0.00043 42.8 0.0 86 86-189 373-469 (495)
368 PF11180 DUF2968: Protein of u 27.0 8.3E+02 0.018 26.4 11.9 74 808-881 113-186 (192)
369 TIGR00219 mreC rod shape-deter 26.9 1.8E+02 0.0038 32.4 7.0 46 206-275 66-111 (283)
370 PF02994 Transposase_22: L1 tr 26.7 1.2E+02 0.0025 35.0 5.7 44 825-868 141-184 (370)
371 PRK13169 DNA replication intia 26.6 1.6E+02 0.0035 28.9 5.8 40 191-230 14-53 (110)
372 PF12709 Kinetocho_Slk19: Cent 26.6 5.8E+02 0.013 24.5 10.4 36 203-238 46-81 (87)
373 KOG1899 LAR transmembrane tyro 26.6 1.4E+03 0.031 29.0 14.5 67 100-171 129-195 (861)
374 PF10191 COG7: Golgi complex c 26.5 1.2E+03 0.026 29.6 14.7 105 48-159 35-141 (766)
375 PF06428 Sec2p: GDP/GTP exchan 25.9 62 0.0013 31.1 2.9 60 176-235 27-87 (100)
376 PF07111 HCR: Alpha helical co 25.8 1.5E+03 0.032 29.0 29.8 277 50-413 376-700 (739)
377 PF15066 CAGE1: Cancer-associa 25.6 1.3E+03 0.028 28.2 22.9 153 117-290 313-489 (527)
378 PF04859 DUF641: Plant protein 25.5 4.3E+02 0.0092 26.8 8.7 49 171-219 80-128 (131)
379 PRK12472 hypothetical protein; 25.4 1.3E+03 0.029 28.3 14.2 86 73-175 202-287 (508)
380 PF11570 E2R135: Coiled-coil r 25.3 7.5E+02 0.016 25.4 10.2 77 45-124 20-119 (136)
381 PF02050 FliJ: Flagellar FliJ 25.3 5E+02 0.011 23.3 11.9 104 789-892 1-109 (123)
382 PF06476 DUF1090: Protein of u 25.2 3.6E+02 0.0077 26.6 7.9 62 62-123 21-90 (115)
383 PF04871 Uso1_p115_C: Uso1 / p 25.1 5.4E+02 0.012 25.9 9.4 76 824-899 1-77 (136)
384 KOG2196 Nuclear porin [Nuclear 25.0 3.6E+02 0.0077 30.2 8.6 46 787-832 114-159 (254)
385 COG3206 GumC Uncharacterized p 25.0 4.4E+02 0.0096 30.7 10.1 111 785-899 291-402 (458)
386 PF01920 Prefoldin_2: Prefoldi 25.0 5.3E+02 0.011 23.4 10.0 10 889-898 88-97 (106)
387 PF08647 BRE1: BRE1 E3 ubiquit 24.9 5.9E+02 0.013 24.0 10.7 43 165-214 53-95 (96)
388 KOG3647 Predicted coiled-coil 24.8 1.1E+03 0.024 27.1 15.1 50 145-194 45-96 (338)
389 smart00338 BRLZ basic region l 24.8 2.3E+02 0.005 24.4 5.9 31 201-231 28-58 (65)
390 KOG2685 Cystoskeletal protein 24.5 7.8E+02 0.017 29.5 11.7 97 67-167 263-375 (421)
391 COG1382 GimC Prefoldin, chaper 24.4 7.3E+02 0.016 24.9 10.6 75 797-871 17-113 (119)
392 PLN03229 acetyl-coenzyme A car 24.4 1.6E+03 0.035 28.9 16.7 24 243-266 683-706 (762)
393 KOG4677 Golgi integral membran 24.3 1.4E+03 0.03 28.0 19.3 68 222-289 304-375 (554)
394 KOG0962 DNA repair protein RAD 24.3 2E+03 0.043 29.9 25.1 178 108-290 266-449 (1294)
395 PRK00409 recombination and DNA 24.2 1.4E+03 0.03 29.2 14.7 39 93-131 517-555 (782)
396 PRK11578 macrolide transporter 24.1 5.8E+02 0.012 28.7 10.5 20 860-879 155-174 (370)
397 TIGR03752 conj_TIGR03752 integ 24.1 4.8E+02 0.01 31.6 10.1 49 91-150 68-116 (472)
398 TIGR02473 flagell_FliJ flagell 23.7 6.5E+02 0.014 24.0 12.5 89 794-882 14-115 (141)
399 PF14932 HAUS-augmin3: HAUS au 23.4 9.5E+02 0.021 26.3 11.6 48 118-166 72-119 (256)
400 PRK08476 F0F1 ATP synthase sub 23.4 7.5E+02 0.016 24.7 12.7 38 128-165 85-122 (141)
401 TIGR01069 mutS2 MutS2 family p 23.4 1.3E+03 0.029 29.3 14.4 9 552-560 704-712 (771)
402 PF00170 bZIP_1: bZIP transcri 23.4 2.7E+02 0.0059 23.9 6.1 34 199-232 26-59 (64)
403 PF08647 BRE1: BRE1 E3 ubiquit 23.3 6.3E+02 0.014 23.8 11.3 38 186-223 32-69 (96)
404 smart00338 BRLZ basic region l 23.2 1.8E+02 0.0039 25.0 5.0 27 196-222 37-63 (65)
405 TIGR03007 pepcterm_ChnLen poly 23.2 1.2E+03 0.027 27.1 19.5 22 109-130 167-188 (498)
406 PRK10803 tol-pal system protei 23.1 3.5E+02 0.0075 29.8 8.3 46 811-859 58-103 (263)
407 PF05529 Bap31: B-cell recepto 23.1 5.5E+02 0.012 26.5 9.3 74 805-878 116-190 (192)
408 PF14772 NYD-SP28: Sperm tail 22.8 6.4E+02 0.014 23.7 10.4 66 132-202 28-93 (104)
409 COG4985 ABC-type phosphate tra 22.8 6.4E+02 0.014 28.3 9.9 28 197-224 219-246 (289)
410 TIGR01069 mutS2 MutS2 family p 22.7 1.4E+03 0.03 29.1 14.3 17 146-162 539-555 (771)
411 KOG4603 TBP-1 interacting prot 22.5 3.8E+02 0.0083 28.7 7.9 29 200-228 87-115 (201)
412 KOG2391 Vacuolar sorting prote 22.5 3.5E+02 0.0075 31.6 8.2 54 819-872 223-276 (365)
413 PF10211 Ax_dynein_light: Axon 22.4 9.3E+02 0.02 25.4 15.8 40 88-127 32-76 (189)
414 PF02403 Seryl_tRNA_N: Seryl-t 22.3 5.7E+02 0.012 23.9 8.5 21 158-178 37-57 (108)
415 PF12126 DUF3583: Protein of u 22.3 8.9E+02 0.019 28.0 11.1 41 229-269 49-89 (324)
416 COG3096 MukB Uncharacterized p 22.3 1.8E+03 0.04 28.8 20.3 44 71-114 365-415 (1480)
417 PF12795 MscS_porin: Mechanose 22.2 9.8E+02 0.021 25.6 18.5 158 107-272 35-202 (240)
418 COG1322 Predicted nuclease of 22.1 1.4E+03 0.031 27.5 18.5 127 91-230 54-188 (448)
419 COG1256 FlgK Flagellar hook-as 22.1 4.5E+02 0.0097 32.2 9.6 82 106-195 134-215 (552)
420 TIGR01933 hflK HflK protein. H 22.1 5E+02 0.011 27.8 9.1 51 113-163 145-195 (261)
421 KOG4360 Uncharacterized coiled 22.1 1.6E+03 0.034 27.9 15.1 69 198-269 232-303 (596)
422 PF05377 FlaC_arch: Flagella a 21.9 2.4E+02 0.0051 24.9 5.3 37 816-852 2-38 (55)
423 PF15233 SYCE1: Synaptonemal c 21.8 8.9E+02 0.019 24.9 11.3 38 163-200 40-77 (134)
424 PRK10476 multidrug resistance 21.7 1.1E+03 0.025 26.1 12.4 10 146-155 152-161 (346)
425 KOG4302 Microtubule-associated 21.7 1.7E+03 0.037 28.2 22.4 69 161-229 65-140 (660)
426 KOG0810 SNARE protein Syntaxin 21.6 3.6E+02 0.0079 30.6 8.2 76 808-883 34-109 (297)
427 TIGR02977 phageshock_pspA phag 21.5 9.9E+02 0.022 25.4 14.6 114 85-212 34-147 (219)
428 PF09744 Jnk-SapK_ap_N: JNK_SA 21.4 5.5E+02 0.012 26.7 8.8 54 818-871 86-139 (158)
429 PF05308 Mito_fiss_reg: Mitoch 21.3 89 0.0019 34.5 3.4 23 249-271 116-138 (253)
430 PF14389 Lzipper-MIP1: Leucine 21.3 2.5E+02 0.0054 26.3 5.8 35 148-182 6-40 (88)
431 CHL00019 atpF ATP synthase CF0 21.2 9.2E+02 0.02 24.9 13.8 31 114-144 73-103 (184)
432 COG1842 PspA Phage shock prote 21.2 1.1E+03 0.024 25.8 17.9 29 50-78 9-37 (225)
433 PF04977 DivIC: Septum formati 21.0 3.5E+02 0.0076 23.4 6.4 38 807-844 24-61 (80)
434 PF09728 Taxilin: Myosin-like 21.0 1.2E+03 0.027 26.3 30.7 41 247-290 243-283 (309)
435 CHL00118 atpG ATP synthase CF0 20.5 8.8E+02 0.019 24.4 13.7 29 115-143 72-100 (156)
436 TIGR01063 gyrA DNA gyrase, A s 20.5 5.1E+02 0.011 33.0 10.0 57 796-852 415-472 (800)
437 PRK11578 macrolide transporter 20.4 6.8E+02 0.015 28.1 10.1 18 859-876 161-178 (370)
438 PF05597 Phasin: Poly(hydroxya 20.3 7.1E+02 0.015 25.2 9.1 38 125-162 62-99 (132)
439 PF06721 DUF1204: Protein of u 20.3 7.5E+02 0.016 26.9 9.6 50 785-834 21-70 (228)
440 PF13942 Lipoprotein_20: YfhG 20.2 3.5E+02 0.0076 28.8 7.1 36 206-241 130-166 (179)
441 PRK14475 F0F1 ATP synthase sub 20.2 9.2E+02 0.02 24.5 13.8 37 113-149 58-94 (167)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=2.4e-182 Score=1570.17 Aligned_cols=712 Identities=49% Similarity=0.644 Sum_probs=636.6
Q ss_pred chhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 002598 66 KDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS 145 (902)
Q Consensus 66 Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s 145 (902)
||+|||||+|||||||+||||||+||++||+|||++++|+++++|||+|||||||+||||||++||||||+||||+++++
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
+||+++|.+||.||++++++|+++++||++|+++|++|+++|.+|+++++++++++.+|++||+++||||++||||||++
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCC
Q 002598 226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNS 305 (902)
Q Consensus 226 qKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~ 305 (902)
+|||+||++||+|++||||+|||||||+|||||||||||||||+||||||||||||||||+||+++|++++++||||+++
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhhcccc
Q 002598 306 SPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKI 385 (902)
Q Consensus 306 ~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~~~~~ 385 (902)
++++++ .++. ..+..+.+.++|||+||++|||||||||++|++||+||||||+|||+|||||++||+|+ +.+ ++++
T Consensus 241 ~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~-~~~~ 316 (769)
T PF05911_consen 241 RPSSPH-DFSP-QNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS-GQVS 316 (769)
T ss_pred cccccc-cccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hccc
Confidence 776443 3333 44455788999999999999999999999999999999999999999999999999999 445 9999
Q ss_pred cCCccccccccccccccccCCCCCCCCCcchhhhhhhhchhhhhccCCCCCCCCccccCccCCcccchHHHhHHhhhccC
Q 002598 386 MEPSRTSIMSYELSLTSMSDIGSDDKVNCAESRASALISESEHLRSGKQREPPFCRTVGASDISLMDDFVEMERLAIVSV 465 (902)
Q Consensus 386 ~e~~~~~~~s~~~s~~S~sd~g~dd~~scseSWAsALisEld~fk~~K~~~~~s~~~~~~sdi~LMDDFlEMEKLA~~s~ 465 (902)
+|+++|+|++||+|++||||+|+||++||+|||||||||||||||++|.++++++++++++||+|||||||||||||+|+
T Consensus 317 ~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~ 396 (769)
T PF05911_consen 317 MELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSR 396 (769)
T ss_pred cccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998888889998889999999999999999999
Q ss_pred CCCCCCCccCcccccccCCCCCCCCCCCCCCccCccccccCCcccccccccchhhhhhhccCCCchhHHHHHHHHHhhhc
Q 002598 466 NKPDGTSHVSPIRANAIVGPLETESSGHSPATIGEEIFRVPEHQADFGVLNREIKSRDILIGKFPSWLQEILELILEQNH 545 (902)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~~~~~~s~~~~~~~~gkelv~~~~~~~~~~~s~~~~~~~d~~~~~~~~wlqdvl~~Ileq~~ 545 (902)
+++.+.+..++... ++.......+.+.+.++.. +++++++|+|||+|+++|+++|+
T Consensus 397 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~wLqsv~k~v~~q~~ 452 (769)
T PF05911_consen 397 DSSSPSSCSSSEVD--------SDSSVTLESSSKRESVLES----------------DKLSDRIPEWLQSVLKLVLEQKE 452 (769)
T ss_pred CCCCCCCCCCcccc--------ccccccccccccccccccc----------------hhhcccccHHHHHHHHHHHHHHH
Confidence 87644433322111 1222333334443433311 57889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHhhhccccccccccccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 002598 546 VTNRHPYKILEDVRDALVYIDHQSTHQLVDTRESSNNLHKSNSPHFSSVTDAEISLSEKNQQFHSDLSKSIRKIAELIEK 625 (902)
Q Consensus 546 ~s~~~~d~ILedIr~AL~~in~~~~~~~~d~~~~~~~~~t~~~~e~~~v~~~~~~~~~~~q~~q~dL~ksI~~I~~lIe~ 625 (902)
+++++ .||+||+.||++++++..++..+. . + +...+.+++.
T Consensus 453 ~s~i~--~ILedI~~al~~~~~~~~~~~~~~-----~-~-------------------------------~~~~~sL~e~ 493 (769)
T PF05911_consen 453 VSKIS--EILEDIEIALDSINNSSNCDDDSE-----E-Y-------------------------------ESMEASLVEE 493 (769)
T ss_pred hhhHH--HHHHHHHHHHHhhccccccccccc-----h-h-------------------------------hhhhhhHHHH
Confidence 99999 999999999999988765444111 0 0 2345566666
Q ss_pred hccCCcccccccccccCCCcccccCCCCCCcceeeeecccchhhHHHHHHHHHHhhhhccCcccHHHHHHHHHHHHHHHH
Q 002598 626 INLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVLNKEADFNKFANDLSIALEWIM 705 (902)
Q Consensus 626 i~~~~~~~~~~~~~~~~dg~~~~~~n~~~~gy~v~~f~wk~seL~~~Le~fvh~C~dlL~gka~le~F~~El~~~L~wi~ 705 (902)
+..+..... .+.+|+ |+.++|+.+|++|+|+|+|||+|+++|++|+.|+|.+|+||+
T Consensus 494 ~~s~~~~s~------------------eL~~av-----skIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIl 550 (769)
T PF05911_consen 494 SKSMIEISQ------------------ELNVAV-----SKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWIL 550 (769)
T ss_pred HHHHHhhcc------------------cHHHHH-----HhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 665544222 223444 444899999999999999999999999999999999999999
Q ss_pred hhcccccccchhHHHhhhccCchhhccccchhhccccccccccCCCCCCCCCCCCCcccccCCcccCCCCCCCCCCCCCC
Q 002598 706 NHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLPTFAVANGHYFSHKKELPSNESEPG 785 (902)
Q Consensus 706 n~cfs~~d~s~~~d~ikk~fd~~eS~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~~~~~sn~~~~~~~~e~~~~~~~e~ 785 (902)
+|||+++|+++|+|+|+++|+|+.+.+ .+ ++..++++. . ....-.
T Consensus 551 s~~~SLqDv~s~~sEIK~~f~~~ss~e---~E---~~~~dea~~-------------------~----------~~~el~ 595 (769)
T PF05911_consen 551 SNCFSLQDVSSMRSEIKKNFDGDSSSE---AE---INSEDEADT-------------------S----------EKKELE 595 (769)
T ss_pred HccchHHHHHHHHHHHHHhhhhccccc---cc---ccchHHHHH-------------------H----------HHHHHH
Confidence 999999999999999999999998853 22 112111100 0 001126
Q ss_pred cccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHH
Q 002598 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (902)
Q Consensus 786 ~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~el 865 (902)
++|+.++++|++|++.|.+|+++++.+++||+|+|++|++|+++|.++++|++++|+||+||+++|++|++|++++++++
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhhcC
Q 002598 866 NEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER 902 (902)
Q Consensus 866 n~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QLe~ 902 (902)
+.++.|+++||+||++++.+|+|++++|.+||+||+|
T Consensus 676 ~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 676 EELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999986
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.75 E-value=0.0021 Score=78.84 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=24.2
Q ss_pred hHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHH
Q 002598 329 FLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQI 376 (902)
Q Consensus 329 ~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql 376 (902)
-+..++..++.+.+.+...+.....+|+-.+..+.....++..++...
T Consensus 452 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555554444454444443
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.52 E-value=0.011 Score=74.80 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=30.5
Q ss_pred cccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 002598 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKL 846 (902)
Q Consensus 790 ~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~ 846 (902)
.++.+.+.+..++....++++.+...+.+.+..+..++.++..+++....++..++.
T Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 783 (1163)
T COG1196 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555444444444
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.92 E-value=0.014 Score=71.46 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHH
Q 002598 90 EVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLM---ILEEKLAETSKRL 166 (902)
Q Consensus 90 E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~---eLE~KL~Ea~k~L 166 (902)
++..+...++....+...++.++..+...++.+..++..++.+.++.-.+ +.....+...++. .++..+..+..++
T Consensus 671 ~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 749 (1179)
T TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERI 749 (1179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444444444322211111 1111111211111 2233333333333
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhH
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADES 246 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA 246 (902)
..+..+...+..-+..-..-+..+...+...+..+..+...++.+..+...++.++..++.++.....+.....+.....
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l 829 (1179)
T TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444455555555555555566666655555554444443333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002598 247 HKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 247 ~KQhlEsvKKIaKLEAECqRLR 268 (902)
..+..+..+.+..++.+...+.
T Consensus 830 ~~~~~~l~~~~~~~~~~l~~~~ 851 (1179)
T TIGR02168 830 ERRIAATERRLEDLEEQIEELS 851 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.91 E-value=0.14 Score=63.25 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHh
Q 002598 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (902)
Q Consensus 85 EKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQL 126 (902)
.....+...+..++.....+...++.++..++..+.+...++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 274 (1164)
T TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433333333333
No 6
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.83 E-value=0.18 Score=61.85 Aligned_cols=211 Identities=18% Similarity=0.164 Sum_probs=133.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCcccccccccccCCCcccccCCCCCCcceeeeecccchhhHHHHHHHHHHhhhhc
Q 002598 605 NQQFHSDLSKSIRKIAELIEKINLTSPEYGLLENLSKKDGSVISYKNTAPSGYMVRVFQWKTSELSDILQQFVHACYGVL 684 (902)
Q Consensus 605 ~q~~q~dL~ksI~~I~~lIe~i~~~~~~~~~~~~~~~~dg~~~~~~n~~~~gy~v~~f~wk~seL~~~Le~fvh~C~dlL 684 (902)
.+.++++|..+|.+|++|+..+...+..|. |.++ + + .+|...++.|..+...++
T Consensus 497 ~~~~s~eL~~avskIsEfv~~LekeVh~C~--DLLs-g-k----------------------adLE~fieE~s~tLdwIl 550 (769)
T PF05911_consen 497 MIEISQELNVAVSKISEFVLVLEKEVHVCQ--DLLS-G-K----------------------ADLERFIEEFSLTLDWIL 550 (769)
T ss_pred HHhhcccHHHHHHhHHHHHHHHHHHHHHHH--HHhc-c-h----------------------hHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999998888 4433 1 1 268888999999999999
Q ss_pred cCcccHHH---HHHHHHHHHHHHHhhcccccccchhHHHhhhccCchhhccccchhhccccccccccCCCCCCCCCCCCC
Q 002598 685 NKEADFNK---FANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQSSCLP 761 (902)
Q Consensus 685 ~gka~le~---F~~El~~~L~wi~n~cfs~~d~s~~~d~ikk~fd~~eS~s~~e~e~~~~~~~~~~dk~~l~~~~~~~~~ 761 (902)
++...|.+ -..++-.-+.|-..+-..+......... + ....+.+ ..++..- ..
T Consensus 551 s~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~----~-----~~el~ee---------lE~le~e-----K~- 606 (769)
T PF05911_consen 551 SNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTS----E-----KKELEEE---------LEKLESE-----KE- 606 (769)
T ss_pred HccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHH----H-----HHHHHHH---------HHHHHHH-----HH-
Confidence 99999988 4455555555544433222111000000 0 0000000 0000000 00
Q ss_pred cccccCCcccCCCCCCCCCCCCCCcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q 002598 762 TFAVANGHYFSHKKELPSNESEPGSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (902)
Q Consensus 762 ~~~~sn~~~~~~~~e~~~~~~~e~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E 841 (902)
.....|.......+.+..+|+.....+..++.+|.-+.+.=.-+..||...+.++.-++
T Consensus 607 ---------------------~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 607 ---------------------ELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLE 665 (769)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00112334445567777888889999999999999999999999999999999999999
Q ss_pred HHHHHH-------HHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcc
Q 002598 842 DQVKLQ-------KMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCC 886 (902)
Q Consensus 842 ~Ql~~~-------~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~c 886 (902)
+++.-- ..--..|+..+..-+.--.++..|--.||.+|+..+..+
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~ 717 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEE 717 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhccc
Confidence 886632 222233444444434444556677778888888776544
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.63 E-value=0.052 Score=71.58 Aligned_cols=86 Identities=28% Similarity=0.362 Sum_probs=76.2
Q ss_pred hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002598 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV---- 271 (902)
Q Consensus 196 ~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv---- 271 (902)
.-+.|++.|...++...|.+..+.-.+..++..+...+.+.+..+++-+-...|.++.-++++-|++||..||.-+
T Consensus 1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred HhcCCChHHH
Q 002598 272 RKRLPGPAAL 281 (902)
Q Consensus 272 RK~lPgpAal 281 (902)
|-|-|-+..+
T Consensus 1688 Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1688 RARRQAELEL 1697 (1930)
T ss_pred HHHHhhHHHH
Confidence 4444444433
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.92 Score=58.06 Aligned_cols=103 Identities=27% Similarity=0.340 Sum_probs=63.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHH
Q 002598 798 RQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEV 877 (902)
Q Consensus 798 le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ 877 (902)
++.++......+..++..+.+.+..+.+++.+|..++.-..-+++-+.....-.++|+.++..++.++.++..++..++.
T Consensus 833 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 912 (1163)
T COG1196 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444445555555556666666666666666777777777777777777777777777777777777
Q ss_pred HhhhhhhcchHHHHHHHHHHHhh
Q 002598 878 ELEDKSNCCEELEATCLELQLQL 900 (902)
Q Consensus 878 ELe~~k~~ceelea~C~ELq~QL 900 (902)
.+..-...|+.+...+..++..+
T Consensus 913 ~~~~l~~~~~~~~~~~~~~~~~~ 935 (1163)
T COG1196 913 RLEELEAKLERLEVELPELEEEL 935 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 77665555666665555555444
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.35 E-value=0.58 Score=55.63 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhh
Q 002598 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFV 129 (902)
Q Consensus 87 AE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~ 129 (902)
+..|...|.+.......++..++.++..|...|..-.+....+
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555566666666666664444333333
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.045 Score=66.39 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhhhhh---hHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002598 86 KAEAEVVSLKQELDAALQQRDTGEERLIHL---DAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (902)
Q Consensus 86 KAE~E~~~lKkqLe~a~~q~~~lEdRvshL---D~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea 162 (902)
+-|+|+..||..|....+.-..|..+++.| |..||.++.||+.=-|+=+-|++..+..+.++-..+. .||.||.+-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~-~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ-QLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 789999999999999999999999996655 5679999999999999999999999987555555544 788888776
Q ss_pred HHH
Q 002598 163 SKR 165 (902)
Q Consensus 163 ~k~ 165 (902)
...
T Consensus 501 ~~~ 503 (697)
T PF09726_consen 501 RRQ 503 (697)
T ss_pred HHH
Confidence 543
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.34 E-value=0.78 Score=56.68 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhH
Q 002598 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDA 117 (902)
Q Consensus 87 AE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ 117 (902)
...+...++..++....+...++..+..+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1179)
T TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTA 260 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333333333333
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.26 E-value=0.48 Score=60.79 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=100.9
Q ss_pred hhchhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHH--------H
Q 002598 39 LTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAIT-------GREKAEAEVVSLKQELDAAL--------Q 103 (902)
Q Consensus 39 ~~~~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~-------GwEKAE~E~~~lKkqLe~a~--------~ 103 (902)
..+.+.|+..+..++..|..+......-+...+++.+...++-. +-+.++..+..++.+.+... .
T Consensus 599 ~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 678 (1201)
T PF12128_consen 599 AASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEE 678 (1201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888888887777777777777766655543 33444444443333333222 2
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 104 q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
.+..++.++..++.+|+..-.++....++.+...++.-+.....|..+..++..++..+..++...+++...
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~ 750 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKE 750 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566677788888888888999999999999999999999999999999999999999988887777665
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.18 E-value=1.1 Score=60.00 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=81.2
Q ss_pred cchhhhHHHHHHHhhhhhHHHHHHHHHHHHH-------HHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHH-
Q 002598 792 EAGNKVRQECLVSAIDKSNSLMSQLQESQKI-------VSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV- 863 (902)
Q Consensus 792 ~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~-------i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~- 863 (902)
-+.|+.||.+|+-+-.+++.....+.-++.. ++.+..+|..-++-+.-+|.+-+..-.-++||-.++.+++.
T Consensus 1715 ~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~ 1794 (1930)
T KOG0161|consen 1715 TAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQA 1794 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888888777766555444 44555666666667777777777777777788877776654
Q ss_pred -------HHHHHHHHhhhhHHHhhhhhhcchH-------HHHHHHHHHHhhc
Q 002598 864 -------DLNEACQKLSSLEVELEDKSNCCEE-------LEATCLELQLQLE 901 (902)
Q Consensus 864 -------eln~~~~K~ssLE~ELe~~k~~cee-------lea~C~ELq~QLe 901 (902)
-++.+..+|..||.+|+.+..-+.+ .+-++.|||.|++
T Consensus 1795 a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~e 1846 (1930)
T KOG0161|consen 1795 ALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVE 1846 (1930)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhh
Confidence 3788899999999999998766655 4667788888875
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=97.11 E-value=1.3 Score=54.56 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=60.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHH--HHHhhHHHHHHHHHH
Q 002598 79 EAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAV--MKASMEFEQSLMILE 156 (902)
Q Consensus 79 EAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav--~k~s~Ewek~r~eLE 156 (902)
+.+..|+....++..+...++....+...++.++..+...+.+.-+++..+..+-+.-..+.. .......+..+.+|+
T Consensus 241 ~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~ 320 (880)
T PRK02224 241 EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 444455555555555555555555555555444444444333333333333211111111000 000112222333444
Q ss_pred HHHHHHHHHHH-------HhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 157 EKLAETSKRLA-------KLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 157 ~KL~Ea~k~L~-------~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
.++.+++..+. .+..+...+...+...++.+.++++..+....+...+..++...+.+...|+-++..+...
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~ 399 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444443 3333333333444444444444444444444444444444444444444444444443333
No 15
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.02 E-value=0.72 Score=54.85 Aligned_cols=44 Identities=30% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHH
Q 002598 77 AQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (902)
Q Consensus 77 aeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALK 120 (902)
.++....++.+..|...|+.+++++..+...|++.+..|-.-.+
T Consensus 194 ~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 194 QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999988877655543
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=1.6 Score=56.61 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=36.3
Q ss_pred hhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhhcccccC
Q 002598 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIME 387 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~~~~~~e 387 (902)
..+..++..++++...|+.-|.. .+..-+.-.|-++.-++...+.=...|....++++
T Consensus 1071 a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~ 1128 (1311)
T TIGR00606 1071 VLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLD 1128 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888854 44455555566666655555555555555444443
No 17
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.93 E-value=2 Score=54.92 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=40.5
Q ss_pred hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH-----HHHHHHHHHHHHHH
Q 002598 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLES-----VKKIAKLESECQRL 267 (902)
Q Consensus 196 ~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEs-----vKKIaKLEAECqRL 267 (902)
+..-.+++++.++.+++-.+.+++.+++.++. .|.+..++-..++..+-+-++|- -....++.+||+|+
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e---l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEE---LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777777777777777666 33333344444444333333332 23456777888888
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=2.6 Score=54.80 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHh
Q 002598 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (902)
Q Consensus 89 ~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQL 126 (902)
.++-.++.++.++..+...++..+..++..|......+
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444554444444444444444444444444333
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.90 E-value=2.8 Score=55.71 Aligned_cols=223 Identities=25% Similarity=0.324 Sum_probs=144.0
Q ss_pred hchhhhhHhHhhhHHHHHHHHhh-cccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhh---
Q 002598 40 TDKAELENDVKNLNDKLFSALAE-CNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHL--- 115 (902)
Q Consensus 40 ~~~~~l~~~~k~LneKLs~al~~-~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshL--- 115 (902)
....+|-..|+.|.+++-++-.+ -...-..++.|..-|-++|+--++--++. .+.++....+.--+......+
T Consensus 539 ekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~---~~~i~sLl~erd~y~e~l~~~e~~ 615 (1822)
T KOG4674|consen 539 EKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQ---EQRIESLLTERDMYKELLAELEDS 615 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccc
Confidence 34566777899999999988776 34556778999999999998776644332 223333333333332222221
Q ss_pred -------------------hHHHHHHHHHhhhhhhHHH---HHHHHHHHHHhhHHHHHHHHHH----------HHHHHHH
Q 002598 116 -------------------DAALKECMDQLHFVREEQE---QRIHDAVMKASMEFEQSLMILE----------EKLAETS 163 (902)
Q Consensus 116 -------------------D~ALKeCmrQLr~~rEEqE---qki~eav~k~s~Ewek~r~eLE----------~KL~Ea~ 163 (902)
+..|++--.+|+.++.|-. ...++.+.....+...+|..|+ .++..+.
T Consensus 616 ~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~ 695 (1822)
T KOG4674|consen 616 HQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLE 695 (1822)
T ss_pred ccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444445555555443 2223333333333333333332 3444444
Q ss_pred H-------HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhH----------------
Q 002598 164 K-------RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKY---------------- 220 (902)
Q Consensus 164 k-------~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKy---------------- 220 (902)
+ +...+++-|..|...+......+..+..++..+...+..|.+.++.+-+|+..|+.
T Consensus 696 ~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~ 775 (1822)
T KOG4674|consen 696 KNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQ 775 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44455555667888888999999999999999999999999999999998866543
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 221 -EVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 221 -El~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
.++.+-..|++-..+++.+ ++|-++..+ .+|-.|+.+.++||.=+
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344444477777777777 888899888 79999999999988653
No 20
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.81 E-value=1.1 Score=53.34 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH--H-HHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL--A-KEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEV 222 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~--~-k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl 222 (902)
+..++....++..|..+......+..|-..|...-. . --..++.+.+++...+..+..+..++.......+.++.++
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~l 385 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEEL 385 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 334444445555566665555555555555444411 0 0113555666666667777777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHhhhhHHH
Q 002598 223 RVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR-LPG-PAALAKMKNEV 288 (902)
Q Consensus 223 ~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~-lPg-pAala~Mk~Ev 288 (902)
..+.+.++....++.-=........+...+.-+++.++......++.+++|+ +|| |.-.-.|-.++
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~ 453 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEV 453 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 8888888766666666666668888888888899999999999999999888 999 65555444443
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.77 E-value=0.52 Score=50.00 Aligned_cols=169 Identities=25% Similarity=0.314 Sum_probs=79.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002598 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (902)
Q Consensus 83 GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea 162 (902)
=-++||+|+.+|.+.+.......-..++|+.....-|-+.-..+ ++-++.....-......=+++ ..||.+|.++
T Consensus 30 ~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~----de~er~~k~lE~r~~~~eeri-~~lE~~l~ea 104 (237)
T PF00261_consen 30 RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA----DESERARKVLENREQSDEERI-EELEQQLKEA 104 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 34578888888888777766666666666555444443333221 122221111111100111111 1344444444
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH---HHHHH-----
Q 002598 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL---EIRNE----- 234 (902)
Q Consensus 163 ~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL---EIR~e----- 234 (902)
...+ ..-+.-..+....+..++.++.....|++.++..+..|..+|+.+..-| ++.-+
T Consensus 105 ~~~~--------------ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 105 KRRA--------------EEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHH--------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 3333 2223333344444445555555556666666666666666666554442 11111
Q ss_pred H-------H-------HhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 235 E-------R-------EFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 235 E-------R-------els~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
+ + +...|+ +.|-+.=-...+.|..||.+...++.-.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Ra-e~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRA-EFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 111222 4555555555666666666666666554
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.74 E-value=0.49 Score=58.35 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=90.6
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHH
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmr 124 (902)
|..+|..|.-+|-.+...++.| .+..+.+..--...-.|+.-++-.++....++..|+.++..|++.|++..+
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk-------~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKK-------QAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666766666666544 444444444444556788889999999999999999999999999999999
Q ss_pred HhhhhhhHHH------------HHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 002598 125 QLHFVREEQE------------QRIHDAVMKASMEFEQ-------SLMILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185 (902)
Q Consensus 125 QLr~~rEEqE------------qki~eav~k~s~Ewek-------~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~ 185 (902)
||...++-=. -++-+|+..+-+-.+. ...+....+...++++..+++++..|-.=|.+|.-
T Consensus 414 ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 414 QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9887766433 2222333332221111 11222234444455666666666666666666666
Q ss_pred HHHHHHhhhh
Q 002598 186 LIEDLGKQRT 195 (902)
Q Consensus 186 ~i~eL~e~ks 195 (902)
.+..++++.+
T Consensus 494 ~l~~~kee~s 503 (775)
T PF10174_consen 494 QLEDAKEEAS 503 (775)
T ss_pred HHHHhhhHHH
Confidence 6666666555
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.72 E-value=0.14 Score=60.46 Aligned_cols=192 Identities=21% Similarity=0.353 Sum_probs=115.0
Q ss_pred HHHhhcccchhHHHHhHHHHHHHhh----hhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHH
Q 002598 58 SALAECNAKDDLVKKHAKMAQEAIT----GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQ 133 (902)
Q Consensus 58 ~al~~~~~Kd~lVkqhaKvaeEAV~----GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEq 133 (902)
.++.++.|+.+++|--.|..++.+. --..-..++..+|++|++.+.-...++-++.-| ++.|.+.+..+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~L-------leel~f~~~~h 220 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTL-------LEELAFLKRIH 220 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHhcc
Confidence 4467777888888888888888874 344556778888999998888887777776544 44555555566
Q ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH-------HHHHHH--------------H
Q 002598 134 EQRIHDAVMKASMEF-EQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKE-------KLIEDL--------------G 191 (902)
Q Consensus 134 Eqki~eav~k~s~Ew-ek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~-------~~i~eL--------------~ 191 (902)
++.|.+......++- ...+-.++++|+.+ +..++++.++.++ +.|. +-|.++ +
T Consensus 221 ~~eI~e~~~~~~rd~t~~~r~~F~~eL~~A---i~eiRaqye~~~~--~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 221 KQEIEEERRKARRDTTADNREYFKNELALA---IREIRAQYEAISR--QNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHH---HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 666665555544444 33444444544444 2233444333221 1111 122333 3
Q ss_pred hhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH--HHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 192 KQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE--IRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 192 e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE--IR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
|+....-..+..|.++|..+|..|..|-..+.-|.=+|. -|.=|..|.-+ .+.|++|=.||+.|=.
T Consensus 296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~k------------d~~i~~mReec~~l~~ 363 (546)
T KOG0977|consen 296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDK------------DAEIAKMREECQQLSV 363 (546)
T ss_pred HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhH------------HHHHHHHHHHHHHHHH
Confidence 666666677788888888888888887776665554432 23333333322 3456777778877655
Q ss_pred HHHh
Q 002598 270 LVRK 273 (902)
Q Consensus 270 lvRK 273 (902)
=+.+
T Consensus 364 Elq~ 367 (546)
T KOG0977|consen 364 ELQK 367 (546)
T ss_pred HHHH
Confidence 5444
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.63 E-value=1.2 Score=48.21 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=55.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHH
Q 002598 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEF---EQSLMILEEKL 159 (902)
Q Consensus 83 GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ew---ek~r~eLE~KL 159 (902)
=|..-+.|+..++++|+++...+..++-.+..+-..+.+.-.++....... ..+..-+....++. --.+.+||+++
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~-~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAER-KDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 378889999999999999999999999999888888777765554442211 11111111112222 22345566666
Q ss_pred HHHHHHHHHhhhh
Q 002598 160 AETSKRLAKLGVE 172 (902)
Q Consensus 160 ~Ea~k~L~~~~aE 172 (902)
.-++.+|.-++.-
T Consensus 127 ~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 127 QSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6666665554443
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=96.50 E-value=3.5 Score=50.84 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHH
Q 002598 184 EKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESE 263 (902)
Q Consensus 184 ~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAE 263 (902)
.+-+.++...+...+..+.....+++..+.....|+.++..+..+++--..+++--...++.+...-.+.-++++.|+.+
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 587 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666655556666666677777777777777766655553333333322222233334445555555555555
Q ss_pred HHHHH
Q 002598 264 CQRLR 268 (902)
Q Consensus 264 CqRLR 268 (902)
..+|.
T Consensus 588 ~~~le 592 (880)
T PRK02224 588 IESLE 592 (880)
T ss_pred HHHHH
Confidence 55554
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=5.2 Score=51.32 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=82.5
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~e 864 (902)
+++++++...-+.++.++.+++-.++.--.-++-.++.+.+|..+...+.+.-.-+..++..-..--..+++.++++++-
T Consensus 906 k~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~ 985 (1293)
T KOG0996|consen 906 KDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEES 985 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66777777777888888888777666666666666677777777777776666666666666666666677777777777
Q ss_pred HHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhhc
Q 002598 865 LNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (902)
Q Consensus 865 ln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QLe 901 (902)
+.++...+..+-.++++-+..--++-+--.+++.++|
T Consensus 986 ~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e 1022 (1293)
T KOG0996|consen 986 LKEIKKELRDLKSELENIKKSENELKAERIDIENKLE 1022 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 7777777777777777777666666665555555554
No 27
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.23 E-value=0.73 Score=55.74 Aligned_cols=161 Identities=21% Similarity=0.182 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhhhhHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 002598 117 AALKECMDQLHFVREEQEQ-----RIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLG 191 (902)
Q Consensus 117 ~ALKeCmrQLr~~rEEqEq-----ki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~ 191 (902)
+-|+||..+++++.+|-|. .-+.++-+|-+-.++.--.|+.|+-+ .+-++..|-..|-.+|..|+.+..-++
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~ 522 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQ 522 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6789999999999999874 33444444444334433334444443 344556777778888888887765555
Q ss_pred hh-------hhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 002598 192 KQ-------RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESEC 264 (902)
Q Consensus 192 e~-------ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAEC 264 (902)
+- +.+.+.+...++++.+.+|-.+.+++.-+-..-+.|.-+|-=+ -|.|..+|-+.|..+.-|
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlk------Qdear~~~~~lvqqv~dL---- 592 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLK------QDEARERESMLVQQVEDL---- 592 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhh------hhHHHHHHHHHHHHHHHH----
Confidence 44 4466667777888888888888888887777777665555332 367888999998877655
Q ss_pred HHHHHHHHhcCCChHHH---hhhhHHHHhhcCCC
Q 002598 265 QRLRVLVRKRLPGPAAL---AKMKNEVEILGRES 295 (902)
Q Consensus 265 qRLR~lvRK~lPgpAal---a~Mk~Eve~lg~d~ 295 (902)
|.-+||+= .+|. ..||-|++.|.+..
T Consensus 593 ---R~~L~~~E--q~aarrEd~~R~Ei~~LqrRl 621 (961)
T KOG4673|consen 593 ---RQTLSKKE--QQAARREDMFRGEIEDLQRRL 621 (961)
T ss_pred ---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44444422 1111 35888888877653
No 28
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.21 E-value=0.024 Score=68.40 Aligned_cols=127 Identities=25% Similarity=0.353 Sum_probs=75.8
Q ss_pred hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHH--H------HHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN--E------EREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 198 e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~--e------ERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
...+..|+.++..+++++..|+.++.+++.+|+-++ - -|-|..+. -=+.+-+.---..+..|-+||.+|+.
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~-NP~~~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRD-NPTSKAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566778888888888888888888887776422 0 11122222 12223333335789999999999999
Q ss_pred HHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHh
Q 002598 270 LVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLD 349 (902)
Q Consensus 270 lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~La 349 (902)
.+|.--.|.. .++ ...|. .......+.+.-|-.++...+--+..||++.+
T Consensus 581 ~l~~le~~~~--------------~~~-------~~~p~---------~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 581 RLRSLEEGNS--------------QPV-------DAVPT---------SSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHTTTT----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCC--------------CCc-------ccccc---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976332221 000 00000 00112344566677888888888999999999
Q ss_pred hhhhhh
Q 002598 350 KKTNEL 355 (902)
Q Consensus 350 kkn~EL 355 (902)
+|-.|.
T Consensus 631 ~ks~eF 636 (722)
T PF05557_consen 631 AKSQEF 636 (722)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 29
>PRK11637 AmiB activator; Provisional
Probab=96.11 E-value=1.3 Score=50.67 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHH
Q 002598 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECM 123 (902)
Q Consensus 87 AE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCm 123 (902)
.+.++..+.++++....+...++.++..+.+.|+.-+
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.06 E-value=2.8 Score=47.95 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002598 253 SVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 253 svKKIaKLEAECqRLR~lvR 272 (902)
--..++.|+++-++|..++.
T Consensus 231 ~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 231 DQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777654
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.93 E-value=5.6 Score=47.71 Aligned_cols=277 Identities=19% Similarity=0.232 Sum_probs=152.6
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhH------HHHHHHhhhh-----hhhhHHHHHHHHHHHHHHHhhhhHhhhhh
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHA------KMAQEAITGR-----EKAEAEVVSLKQELDAALQQRDTGEERLI 113 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqha------KvaeEAV~Gw-----EKAE~E~~~lKkqLe~a~~q~~~lEdRvs 113 (902)
=.+.+..||++|+.-.--+. -|=.||. .+.+.++.|= ..=|+|....++.|+++......++..+.
T Consensus 40 EK~El~~LNDRLA~YIekVR---~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 40 EKKELQELNDRLAVYIEKVR---FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568889999887665553 2223333 3334444221 34589999999999999999999999988
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhHHHHHHHHH
Q 002598 114 HLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK-------RLAKLGVENTHLTKALLAKEKL 186 (902)
Q Consensus 114 hLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k-------~L~~~~aEn~~L~~al~~k~~~ 186 (902)
.|.+-+++.-..+..+ ++-..++-++..+|...=.++|+++.=+.. ++..+++||..|-..|.
T Consensus 117 kl~~e~~elr~~~~~~-----~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~----- 186 (546)
T KOG0977|consen 117 KLREELKELRKKLEKA-----EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA----- 186 (546)
T ss_pred HhHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----
Confidence 8877777666555433 223333444456666666677766655544 56666777666444332
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh----HHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHH---
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLK----YEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAK--- 259 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK----yEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaK--- 259 (902)
.++.++.+.-....+++.+.+.+-.+..+++ .|+.....- -.|+++ ++.-.-=|-+.-.-|..
T Consensus 187 --~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~-----~~rd~t---~~~r~~F~~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 187 --RARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK-----ARRDTT---ADNREYFKNELALAIREIRA 256 (546)
T ss_pred --HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH-----Hhhccc---ccchHHHHHHHHHHHHHHHH
Confidence 3333443333334555566666666665555 233222211 111111 11111222222222222
Q ss_pred ----------------HHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCC
Q 002598 260 ----------------LESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTP 323 (902)
Q Consensus 260 ----------------LEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~ 323 (902)
....+++.|.- .-|+.....+-|.||..+-..-.+.|.+ .++ .
T Consensus 257 qye~~~~~nR~diE~~Y~~kI~~i~~~---~~~~~~~~~~~rEEl~~~R~~i~~Lr~k-----------------lse-l 315 (546)
T KOG0977|consen 257 QYEAISRQNRKDIESWYKRKIQEIRTS---AERANVEQNYAREELRRIRSRISGLRAK-----------------LSE-L 315 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhh---hccccchhHHHHHHHHHHHhcccchhhh-----------------hcc-c
Confidence 33344444421 1234444455566666532221112211 112 2
Q ss_pred cchhhhHHHHHHHh----HHHhHHHHHHHhhhhhhhhHHHHHHHHh
Q 002598 324 SKRINFLTEQLRAM----EEENNSLKEVLDKKTNELQFSRTMYARA 365 (902)
Q Consensus 324 ~k~~~~l~erL~~~----EeEnk~LKe~Lakkn~ELq~sr~m~a~t 365 (902)
...+.+|..|+..+ +++++..-..|+.|.+++...|--|..-
T Consensus 316 E~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 316 ESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred cccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 22345677777665 4778999999999999999999888763
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.87 E-value=4.3 Score=51.65 Aligned_cols=138 Identities=20% Similarity=0.275 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhh------hHHHHHHHHHHHHHhhHHHHHHHHHH---------
Q 002598 92 VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVR------EEQEQRIHDAVMKASMEFEQSLMILE--------- 156 (902)
Q Consensus 92 ~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~r------EEqEqki~eav~k~s~Ewek~r~eLE--------- 156 (902)
.+-.+||........-.|+|+..+..-+++...-++.+| |.+.+.+.+-+.....|.+.++..|-
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~ 356 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDL 356 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443 22223333333333444444444443
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 157 -EKLAETSKRLAKLGVENTHLTKALLAKEKLI-EDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 157 -~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i-~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
.++.+......+.+.+-..|.+.+..=.+.. .++..++.+.+.+++.|....+.+|-.+++|+.|++.+.+++
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554444444433222222 444455555555555566666666656666666655555543
No 33
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.86 E-value=0.24 Score=60.31 Aligned_cols=80 Identities=26% Similarity=0.260 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhh-----------hhhhhcHHHHHHhhhhHHHh
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQR-----------TQAEADSNALMVRLDSTEKE 214 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~k-----------s~ae~e~~~L~~rLes~EKE 214 (902)
+|--+-.--|+.|-+|+-+-++..+.||..|.+.+++|+..+.+.+.+. .+|=+.++.++-+|+..|||
T Consensus 444 ~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 444 QESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 3444444456677777777788888999999999999998876655443 36667778888889999999
Q ss_pred hHhhhHHHHHH
Q 002598 215 NASLKYEVRVL 225 (902)
Q Consensus 215 N~sLKyEl~~l 225 (902)
|.-|...|+..
T Consensus 524 N~iL~itlrQr 534 (861)
T PF15254_consen 524 NQILGITLRQR 534 (861)
T ss_pred hhHhhhHHHHH
Confidence 99888877653
No 34
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.79 E-value=4.4 Score=45.49 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHH
Q 002598 92 VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEK--------LAETS 163 (902)
Q Consensus 92 ~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~K--------L~Ea~ 163 (902)
..||.+|+........|++-+ .+|++.--++..-=|..|..|.-+++++-....+-+-.|=.+ --.++
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~----~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~ 112 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEEN----RALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLS 112 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444433 233443344444444445555555555443333333222111 11233
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002598 164 KRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA 243 (902)
Q Consensus 164 k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSa 243 (902)
++|.+++.|...|-+.|.. ..+..+..|+.++..++++-.+++.+|-.+..| +--=
T Consensus 113 rkl~qLr~EK~~lE~~Le~-------------EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E-------KVdl---- 168 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQ-------------EQEYLVNKLQKKIERLEKEKSAKQEELERLRRE-------KVDL---- 168 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHhH----
Confidence 3444555554444444432 112223455566666655555555444433332 1110
Q ss_pred HhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 002598 244 DESHKQHLE-----SVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 244 eaA~KQhlE-----svKKIaKLEAECqRLR~lvRK 273 (902)
+-+=+|..| .-|.+.+|++|=+.|+.-+-.
T Consensus 169 En~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 169 ENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 122222222 357899999999999887654
No 35
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.64 E-value=0.91 Score=50.67 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=91.4
Q ss_pred hhHhHhhhHHHHHHHH-------hhcccchhHHHHhHHHHHHHhh----hhhh--h--------hHHHHHHHHHHHHHHH
Q 002598 45 LENDVKNLNDKLFSAL-------AECNAKDDLVKKHAKMAQEAIT----GREK--A--------EAEVVSLKQELDAALQ 103 (902)
Q Consensus 45 l~~~~k~LneKLs~al-------~~~~~Kd~lVkqhaKvaeEAV~----GwEK--A--------E~E~~~lKkqLe~a~~ 103 (902)
|......|.+.|.+++ -+++.||+|++-.....++.-. .|.- . -.-...|.+.|-....
T Consensus 95 L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEe 174 (306)
T PF04849_consen 95 LSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEE 174 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHH
Confidence 3444444555555554 4678999999999988876541 1111 0 0114566777777777
Q ss_pred hhhhHhhhhhhhh-----------HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHh
Q 002598 104 QRDTGEERLIHLD-----------AALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL---MILEEKLAETSKRLAKL 169 (902)
Q Consensus 104 q~~~lEdRvshLD-----------~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r---~eLE~KL~Ea~k~L~~~ 169 (902)
.|..|...++||. --+.+|++||+.+...= -.+.+-++.++.+...-+ ..|-++|+++++++...
T Consensus 175 EN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qi-a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 175 ENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQI-ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777 24778999998886533 345555555565554333 35779999999999999
Q ss_pred hhhhhhhhHHHHH
Q 002598 170 GVENTHLTKALLA 182 (902)
Q Consensus 170 ~aEn~~L~~al~~ 182 (902)
.+||..|...|.+
T Consensus 254 ~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 254 AAENEELQQHLQA 266 (306)
T ss_pred hhhHHHHHHHHHH
Confidence 9999998877764
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.36 E-value=5.2 Score=43.38 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=30.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHH
Q 002598 81 ITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAAL 119 (902)
Q Consensus 81 V~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~AL 119 (902)
..=-..++.++..+++.|++++.....++.++..|.+=|
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 334456778888899999999999888888888777644
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.33 E-value=4 Score=47.42 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhh
Q 002598 91 VVSLKQELDAALQQRDTGEERLIH 114 (902)
Q Consensus 91 ~~~lKkqLe~a~~q~~~lEdRvsh 114 (902)
+..++++++....+...++..+..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~ 238 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEE 238 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.27 E-value=14 Score=47.91 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=32.5
Q ss_pred hHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 002598 329 FLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEEL 379 (902)
Q Consensus 329 ~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~l 379 (902)
-+..+|....++-..+-+.|.+.+..+...+...+...-.+.+.+..+..+
T Consensus 611 ~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 661 (1201)
T PF12128_consen 611 QAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRL 661 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444555555555556666667777777777777777666666666666555
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.13 E-value=13 Score=46.57 Aligned_cols=168 Identities=20% Similarity=0.354 Sum_probs=91.6
Q ss_pred hHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------hh
Q 002598 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIH--------DAVMKASMEFEQSLMILEEKLAETSKRLAKL-------GV 171 (902)
Q Consensus 107 ~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~--------eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~-------~a 171 (902)
.++.++.||++.|...-.+...+|++-.++.+ +|.-..-..-+.--..||.-|.+++.++..+ .+
T Consensus 187 ~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~ 266 (775)
T PF10174_consen 187 EAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA 266 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 33445566777777666666666554333211 1111111112222334444444444433333 22
Q ss_pred hhhhh--------hHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002598 172 ENTHL--------TKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA 243 (902)
Q Consensus 172 En~~L--------~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSa 243 (902)
+..-+ +.++..|.+ +..++-+++..++++-.++++|+.+..++..+|.=|.++...|.-+..+.++=.--+
T Consensus 267 ~r~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdv 345 (775)
T PF10174_consen 267 DRDRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDV 345 (775)
T ss_pred chHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22222 344555555 667788888999999999999999999999888877777666444333333211111
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002598 244 --------------DESHKQHLESVKKIAKLESECQRLRVLVRKRL 275 (902)
Q Consensus 244 --------------eaA~KQhlEsvKKIaKLEAECqRLR~lvRK~l 275 (902)
+-..++-.......+.+-.|+..||-+.+++-
T Consensus 346 e~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 346 EALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555566666777776654
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=95.06 E-value=12 Score=46.03 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhh
Q 002598 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH 127 (902)
Q Consensus 88 E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr 127 (902)
+..+..++++++....+...++..+..++..+...-++|.
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~ 231 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555544444433
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.06 E-value=5.8 Score=42.24 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHH
Q 002598 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQ 125 (902)
Q Consensus 86 KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQ 125 (902)
-|+..+....+.+..+.+.....++|+..|+..|++....
T Consensus 68 ~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 68 EAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444445555565566555555443
No 42
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.91 E-value=11 Score=44.75 Aligned_cols=53 Identities=28% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhhhhhcHHHHHHhh---hhHHHhhHhhhHHHHHHHHHHHHHHH
Q 002598 182 AKEKLIEDLGKQRTQAEADSNALMVRL---DSTEKENASLKYEVRVLGKELEIRNE 234 (902)
Q Consensus 182 ~k~~~i~eL~e~ks~ae~e~~~L~~rL---es~EKEN~sLKyEl~~lqKELEIR~e 234 (902)
+|+.....+...+.+++..+..|...+ ..++........++..++++|+-..+
T Consensus 208 ~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 208 EREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555544 23334444445666666666665555
No 43
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.80 E-value=8.1 Score=48.42 Aligned_cols=71 Identities=20% Similarity=0.159 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 002598 182 AKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLES 253 (902)
Q Consensus 182 ~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEs 253 (902)
..++...+|.+.+.+..-....+..+.++..+-..+||.|+.-+.-+++-....-.-+.++ ..++.+|++-
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs-~~~~~~~l~~ 533 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQS-HNNQLAQLED 533 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHH
Confidence 3444555555555555555555566777777777777777777777777766665555555 6666666653
No 44
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.72 E-value=6.1 Score=50.72 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=72.9
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~e 864 (902)
..+.+.++.+.+.|.+.+.........+...+.|+++.|.++++++..++.-=..++.++---+-..=+++..+.....+
T Consensus 948 e~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~ 1027 (1293)
T KOG0996|consen 948 EREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGE 1027 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34556667777788888888887777788889999999999999999998887777777766666555588888888888
Q ss_pred HHHHHHHhhhhHHH
Q 002598 865 LNEACQKLSSLEVE 878 (902)
Q Consensus 865 ln~~~~K~ssLE~E 878 (902)
++++..++--.+..
T Consensus 1028 l~e~~~~~~~~~k~ 1041 (1293)
T KOG0996|consen 1028 LNEIESKIKQPEKE 1041 (1293)
T ss_pred HHHHHhhhhhHHHh
Confidence 88888777666633
No 45
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.58 E-value=13 Score=44.00 Aligned_cols=52 Identities=27% Similarity=0.459 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHh-hhh-hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 176 LTKALLAKEKLIEDLGK-QRT-QAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 176 L~~al~~k~~~i~eL~e-~ks-~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
-.++|+.|+++|..|++ +.. ..+..... .-++.+..|...++-|+..++..+
T Consensus 244 A~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 244 AQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999 333 11111111 334555555555555555555554
No 46
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.43 E-value=6 Score=48.08 Aligned_cols=222 Identities=19% Similarity=0.257 Sum_probs=119.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh---
Q 002598 119 LKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT--- 195 (902)
Q Consensus 119 LKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks--- 195 (902)
|+++++||..=|++=-+.+. .-..-+..++.++..++..++.|-....+-+++-++-|.+|+.+..
T Consensus 2 l~e~l~qlq~Erd~ya~~lk-----------~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLK-----------EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 56777777666665333222 2233456666677777777777777766667777777777776665
Q ss_pred -------hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 196 -------QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 196 -------~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
..+.+ ..|+..++.+.+|...|.-.+..+-+.-+.. | .-..+---+|..||..++||+
T Consensus 71 ~~~~pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L------s--------~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 71 PPEPPAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQVENNEQL------S--------RLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred CccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHHHHHHHHH
Confidence 11122 2455555555555555554444443221111 1 111122334556666666666
Q ss_pred HHHH--hcC-----CC----hHHHhh---hhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHH
Q 002598 269 VLVR--KRL-----PG----PAALAK---MKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQL 334 (902)
Q Consensus 269 ~lvR--K~l-----Pg----pAala~---Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL 334 (902)
.-.. .++ .+ --|+++ ||.-+.-+...++..---+.-. + +...+-.+-..-|+.+|
T Consensus 136 e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el-t----------~~lq~Eq~~~keL~~kl 204 (617)
T PF15070_consen 136 EQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL-T----------SALQSEQHVKKELQKKL 204 (617)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh-h----------HHHHHHHHHHHHHHHHH
Confidence 5431 111 00 112222 3333333322221111000000 0 00011111223688999
Q ss_pred HHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHH
Q 002598 335 RAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIE 377 (902)
Q Consensus 335 ~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~ 377 (902)
..++++-..+|+.|.-|+.|++..+.......+.|.+..+.-.
T Consensus 205 ~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q 247 (617)
T PF15070_consen 205 GELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQ 247 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888777665444
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.39 E-value=6.6 Score=52.08 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=52.7
Q ss_pred cccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHH------------HHhhHHHHHHHHHHHHhhHhHhHH
Q 002598 790 NVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDIL------------KKSKEVIEDQVKLQKMINEDLDTQ 857 (902)
Q Consensus 790 ~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~sl------------k~s~~~~E~Ql~~~~~~~e~Ldt~ 857 (902)
.++.+++..+..++.+...+..++..++..++.+.+++.+|+.+ .--..-+..+|...-.=...|+++
T Consensus 1003 ~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 1082 (1486)
T PRK04863 1003 RAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQ 1082 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444444445555555555555554444332 111133444444444445567888
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhhhcch
Q 002598 858 LKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (902)
Q Consensus 858 ~~~~e~eln~~~~K~ssLE~ELe~~k~~ce 887 (902)
++..+.+++.+..++..++.++..-...+.
T Consensus 1083 ~~~re~EIe~L~kkL~~~~~e~~~~re~I~ 1112 (1486)
T PRK04863 1083 LTFCEAEMDNLTKKLRKLERDYHEMREQVV 1112 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777777655444333
No 48
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.23 E-value=11 Score=45.87 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=77.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHH--------------------------HH
Q 002598 84 REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ--------------------------RI 137 (902)
Q Consensus 84 wEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEq--------------------------ki 137 (902)
++..+.|+..|+.+|+++..+...+++.+..|...++.-..++...+.+.+. .+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5677888888888888888888888888877777777766666555544431 11
Q ss_pred HHH----HHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh
Q 002598 138 HDA----VMKASMEFEQSLMILEEKLAETSK--------------RLAKLGVENTHLTKALLAKEKLIEDLGKQRT 195 (902)
Q Consensus 138 ~ea----v~k~s~Ewek~r~eLE~KL~Ea~k--------------~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks 195 (902)
.++ +.....+|++.|..|..++..+.. ++..++.+-..+..-++.|+..+..|..+..
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 223458999999999998888874 4456666666666667777777766666655
No 49
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.20 E-value=3.1 Score=46.48 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=12.1
Q ss_pred hhHHHHhHHHHHH-Hhhhhh
Q 002598 67 DDLVKKHAKMAQE-AITGRE 85 (902)
Q Consensus 67 d~lVkqhaKvaeE-AV~GwE 85 (902)
=.+||.||..--. .--+|-
T Consensus 119 f~lvK~~aRl~ak~~WYeWR 138 (312)
T smart00787 119 FQLVKTFARLEAKKMWYEWR 138 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3588999965444 445664
No 50
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.10 E-value=9 Score=40.30 Aligned_cols=103 Identities=28% Similarity=0.366 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~ 233 (902)
+++.+|-+...+|.++..+..+|-+.... +.-++ ...|+.+|+.++.....-.+.+..+.+.+ +.
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~~d-----------knL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~l--eL 150 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLSED-----------KNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQL--EL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 77888888888888888777765543221 11111 12333444444433333334444444432 33
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 234 EEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 234 eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
..+.|+++. -+-.+.|.+...++..|..||++|+.-++
T Consensus 151 ~~k~~~rql-~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 151 ENKSFRRQL-ASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777 67788899999999999999999987664
No 51
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.02 E-value=8.7 Score=42.45 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHH---HHHH--HHHHHhhHHHHHHHHHH---HHHH
Q 002598 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ---RIHD--AVMKASMEFEQSLMILE---EKLA 160 (902)
Q Consensus 89 ~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEq---ki~e--av~k~s~Ewek~r~eLE---~KL~ 160 (902)
.+-..||+|++++..+-..+=-|++.=+--+-+|.-|++-++-.|-- .+.- .--.+.-.|.+++.+|| .||.
T Consensus 115 ~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Kle 194 (330)
T KOG2991|consen 115 ESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLE 194 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998889999999999999999999888766541 1111 11234578999999998 5788
Q ss_pred HHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHhhhhhh--hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHH
Q 002598 161 ETSKRLAKLGVE-NTHLTKALLAKEKLIEDLGKQRTQA--EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEERE 237 (902)
Q Consensus 161 Ea~k~L~~~~aE-n~~L~~al~~k~~~i~eL~e~ks~a--e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERe 237 (902)
+++++|...+=- ...-.+.|-+|=+++.+=++++.+. +..+..|...|.--.+.+..||.-...|-+=++-+.++-+
T Consensus 195 e~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVE 274 (330)
T KOG2991|consen 195 EAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVE 274 (330)
T ss_pred HHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888887644311 1122467888888888878887753 3344444455544444444444433333333444444444
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 002598 238 FNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPA 279 (902)
Q Consensus 238 ls~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpA 279 (902)
=..-..=.-..+--|--|.|.+|+-+...+.-+|.-+--.|+
T Consensus 275 gmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~ 316 (330)
T KOG2991|consen 275 GMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVD 316 (330)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 333333233333334556788888887777777654444443
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.00 E-value=16 Score=42.69 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHH
Q 002598 176 LTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEER 236 (902)
Q Consensus 176 L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eER 236 (902)
+...+.+..+.+...+..+.........|+..++.++.++..+-++|..+..+|+-...++
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555666666666666666666666666655444443
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.95 E-value=4.4 Score=44.05 Aligned_cols=82 Identities=29% Similarity=0.337 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHH---------hhHh
Q 002598 147 EFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEK---------ENAS 217 (902)
Q Consensus 147 Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EK---------EN~s 217 (902)
..+.-...|+.++.+..+.|.++++|.+.+.+.+.++...+.+|..+.++-+.++..+..|+...+. +..+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6666677888888888899999999999999999999999999999999999999888888877654 4455
Q ss_pred hhHHHHHHHHH
Q 002598 218 LKYEVRVLGKE 228 (902)
Q Consensus 218 LKyEl~~lqKE 228 (902)
|..|+....+.
T Consensus 94 L~~E~~~ak~r 104 (239)
T COG1579 94 LNIEIQIAKER 104 (239)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 54
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.77 E-value=22 Score=43.75 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=101.5
Q ss_pred HHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002598 188 EDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRL 267 (902)
Q Consensus 188 ~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRL 267 (902)
..+.+.....++-..++-..+....+.+..|..++-.++..|.-+...-.+.+..++.+...-..-.|++..||.|=.||
T Consensus 443 ~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL 522 (716)
T KOG4593|consen 443 QKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL 522 (716)
T ss_pred HHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555566667777777888888888888888888888888888888888888899999999999999
Q ss_pred HHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCc-chhhhHHHHHHHhHHHhHHHHH
Q 002598 268 RVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPS-KRINFLTEQLRAMEEENNSLKE 346 (902)
Q Consensus 268 R~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~-k~~~~l~erL~~~EeEnk~LKe 346 (902)
|+++=.++ +..|+.+..-|-.. ...+|- +.-.-.-.++..+..|+.+||+
T Consensus 523 r~~~e~~~---------------l~gd~~~~~~rVl~--------------~~~npt~~~~~~~k~~~e~LqaE~~~lk~ 573 (716)
T KOG4593|consen 523 RAQLERRL---------------LQGDYEENITRVLH--------------MSTNPTSKARQIKKNRLEELQAELERLKE 573 (716)
T ss_pred HHHHHHHH---------------Hhhhhhhhccceee--------------ecCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97774444 33454443333111 011122 3334456788899999999999
Q ss_pred HHhh---hhhhhhH----HHHHHHHhhhhhhHHHHHHH
Q 002598 347 VLDK---KTNELQF----SRTMYARAASKLSEVESQIE 377 (902)
Q Consensus 347 ~Lak---kn~ELq~----sr~m~a~taskLs~~e~ql~ 377 (902)
.|.. -+...+- .+.+|+- --.+-|++.++.
T Consensus 574 ~l~~le~~~~~~~d~~i~~~s~~~~-~~ev~qlk~ev~ 610 (716)
T KOG4593|consen 574 RLTALEGDKMQFRDGEIAVHSLLAF-SKEVAQLKKEVE 610 (716)
T ss_pred HHHHHhccCCcccchhhHHhhhhcc-hHHHHHHHHHHH
Confidence 5543 3332222 2233331 125556666665
No 55
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=23 Score=43.60 Aligned_cols=129 Identities=21% Similarity=0.291 Sum_probs=73.2
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhh-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA-------DESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSa-------eaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
+.....+++.++.||..|+ -.+++|--.-+|+.... .-+.|-.-.--.++..|.|||+|||.++++
T Consensus 505 i~~~~ke~~~Le~En~rLr-------~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~ 577 (716)
T KOG4593|consen 505 IEQYLKELELLEEENDRLR-------AQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTA 577 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666 44555555555553221 122333344445678999999999999976
Q ss_pred cCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhh
Q 002598 274 RLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTN 353 (902)
Q Consensus 274 ~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ 353 (902)
.= .+.+ -++ . +..+++..+.. .+++.-|-.++-.+|--|..||+..+.|-.
T Consensus 578 le-----------------~~~~--~~~-----d----~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~ 628 (716)
T KOG4593|consen 578 LE-----------------GDKM--QFR-----D----GEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLKEVFASKIQ 628 (716)
T ss_pred Hh-----------------ccCC--ccc-----c----hhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1110 000 0 11122233332 455556778888888889999999987765
Q ss_pred hhhHHHHHHHHhhh
Q 002598 354 ELQFSRTMYARAAS 367 (902)
Q Consensus 354 ELq~sr~m~a~tas 367 (902)
| |-+..|+-..=
T Consensus 629 e--Fr~ac~sL~Gy 640 (716)
T KOG4593|consen 629 E--FRDACYSLLGY 640 (716)
T ss_pred H--HHHHHHhhhhh
Confidence 4 44444444443
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.53 E-value=19 Score=48.09 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=63.5
Q ss_pred ccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH-----------h-hHhHhH
Q 002598 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKM-----------I-NEDLDT 856 (902)
Q Consensus 789 ~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~-----------~-~e~Ldt 856 (902)
+.++...+.++.....+-...+....+++..++.+.++++.++.+++-..-++..+...-. + ...|..
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~ 1067 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHA 1067 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHH
Confidence 4556666667777777777777777777777777777777777665555555444433211 1 123444
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHh
Q 002598 857 QLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (902)
Q Consensus 857 ~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~Q 899 (902)
+|-...+.-+.+..++...+.|++.-...+..+...+.++..+
T Consensus 1068 ~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~ 1110 (1486)
T PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQ 1110 (1486)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555444443
No 57
>PRK11281 hypothetical protein; Provisional
Probab=93.45 E-value=3.2 Score=53.38 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=26.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 243 ADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 243 aeaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
-+....|+-...++|+.+|++.+.|+..+-.
T Consensus 222 ~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 222 QDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888889999999999999987754
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=32 Score=44.17 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=82.2
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhH
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADES 246 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA 246 (902)
.++..|.+.|.+.+..-......+..+.+...+++..|.+.+..++.+...+..+|-.+.+-+---+-|-.-...+.+..
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~ 897 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKC 897 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHH
Confidence 34445555555555544444555555555555555555555555555555555555444333221111111111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCC--hhhhhccCCCCCCCcccccCCCCCCCCCc
Q 002598 247 HKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRES--PETRRKRLNSSPLGSMVDSAFDNPPDTPS 324 (902)
Q Consensus 247 ~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~--~e~rrrr~~~~~~~~~~~s~~d~~~~~~~ 324 (902)
...-..+.=++.+||-|+-++.. -+ +.++-+|+.+-..+ -..-++-+. .... .+|+...++..
T Consensus 898 ~~e~~~~~l~~kkle~e~~~~~~--------e~--~~~~k~v~~l~~k~~wi~~ek~~fg-k~gt-~yDf~~~~p~~--- 962 (1174)
T KOG0933|consen 898 LSEKSDGELERKKLEHEVTKLES--------EK--ANARKEVEKLLKKHEWIGDEKRLFG-KKGT-DYDFESYDPHE--- 962 (1174)
T ss_pred HHHhhcccchHHHHHhHHHHhhh--------hH--HHHHHHHHHHHHhccchhHHHHhhc-CCCC-ccccccCCHhH---
Confidence 22223333345555555554432 22 23444444443221 011111111 1111 12322222222
Q ss_pred chhhhHHHHHHHhHHHhHHHHHHHhhhh-hhhhHHHHHHHHhhhhhhHHHHHHH
Q 002598 325 KRINFLTEQLRAMEEENNSLKEVLDKKT-NELQFSRTMYARAASKLSEVESQIE 377 (902)
Q Consensus 325 k~~~~l~erL~~~EeEnk~LKe~Lakkn-~ELq~sr~m~a~taskLs~~e~ql~ 377 (902)
--++|..|-+---.|...++.++ +=|.-.--+|+..-+|-..++..-.
T Consensus 963 -----are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~ 1011 (1174)
T KOG0933|consen 963 -----AREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKS 1011 (1174)
T ss_pred -----HHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 23455555554555555555544 3345555677777776666665544
No 59
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.31 E-value=0.43 Score=49.12 Aligned_cols=94 Identities=24% Similarity=0.297 Sum_probs=56.8
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~e 864 (902)
.+|+..+.-.+-.+..+|...+++++.+...+.+.+..|+.|+.++..|+.--.-++..|+...-.++.|--.+..+..+
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ 159 (194)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHhhhhHHH
Q 002598 865 LNEACQKLSSLEVE 878 (902)
Q Consensus 865 ln~~~~K~ssLE~E 878 (902)
+|.+..|+..|+.|
T Consensus 160 ~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 160 LNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988876
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.29 E-value=43 Score=45.48 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=123.9
Q ss_pred hhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhH
Q 002598 42 KAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAI----TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDA 117 (902)
Q Consensus 42 ~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV----~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ 117 (902)
...++-.+..|+.+|......-... |.+++-+.+ .-.++..-++..++.+|.++..+...+++.+.-++.
T Consensus 867 ~~~le~k~~eL~k~l~~~~~~~~~l------~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 867 IAKLEIKLSELEKRLKSAKTQLLNL------DSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhc------cccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777664433222 222222222 247888899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 002598 118 ALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQA 197 (902)
Q Consensus 118 ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~a 197 (902)
||..--..+..+| +++.+++...-++ ...||.+|.++.+++..+..+... +.-.++.-..++..+++.+
T Consensus 941 sl~~~ks~lde~~-------~~~ea~ie~~~~k-~tslE~~ls~L~~~~~~l~~e~~~---~~k~~e~~~~~~~~e~~sl 1009 (1822)
T KOG4674|consen 941 SLESVKSELDETR-------LELEAKIESLHKK-ITSLEEELSELEKEIENLREELEL---STKGKEDKLLDLSREISSL 1009 (1822)
T ss_pred HHHHHHHHHHHHH-------HhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc---cccchhhhHHHHHHHhHHH
Confidence 9987766665555 4444444333333 347777777777777666655322 2223334455556666666
Q ss_pred hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 002598 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESEC 264 (902)
Q Consensus 198 e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAEC 264 (902)
-.+...+......+.+-...+|..+..+.+-+ |.-+.+|-++- .+|.+.+.++.+|..+.
T Consensus 1010 ~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~--~~a~~~Ye~el-----~~ha~~~q~l~kl~ee~ 1069 (1822)
T KOG4674|consen 1010 QNELKSLLKAASQANEQIEDLQNDLKTETEQL--RKAQSKYESEL-----VQHADLTQKLIKLREEF 1069 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555443332 33344443332 56777777777776553
No 61
>PF13514 AAA_27: AAA domain
Probab=93.19 E-value=34 Score=44.08 Aligned_cols=302 Identities=22% Similarity=0.253 Sum_probs=144.0
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHH-------HHHHHHHhhhhHhhhhhhhhH
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQ-------ELDAALQQRDTGEERLIHLDA 117 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKk-------qLe~a~~q~~~lEdRvshLD~ 117 (902)
+...+..+-..|..+|..+.. +.-+.--...++..+.-|+.+.+....+.. +++....+...+++++.....
T Consensus 630 ~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1111)
T PF13514_consen 630 LRARRAAARAALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQE 708 (1111)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777766555 222222233344555555555544444444 444444445555555555555
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH------HHHHHH
Q 002598 118 ALKECMDQLHFVREEQEQRIHDA---VMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLA------KEKLIE 188 (902)
Q Consensus 118 ALKeCmrQLr~~rEEqEqki~ea---v~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~------k~~~i~ 188 (902)
.+...+..+...-.-.-..+.++ +... .+.......++.++..+...+.....+...|...+.. -...+.
T Consensus 709 ~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l-~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~ 787 (1111)
T PF13514_consen 709 EWQEALAELGLPADASPEEALEALELLEEL-REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALE 787 (1111)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHH
Confidence 55555555433322111111111 1111 1122222344555555555555555444444433221 013455
Q ss_pred HHHhhhhhh---hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 002598 189 DLGKQRTQA---EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQ 265 (902)
Q Consensus 189 eL~e~ks~a---e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECq 265 (902)
.|+.....+ ......+..+++.++.+...+..++...+.++.-.-. .....+ ...-.+..+-..+...|..+.+
T Consensus 788 ~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~--~a~~~~-~e~l~~~~~~~~~~~~l~~~~~ 864 (1111)
T PF13514_consen 788 ALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE--QAGVED-EEELREAEERAEERRELREELE 864 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 555544432 2233444555555555555555555555555432221 111111 1122334444555666666666
Q ss_pred HHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHH
Q 002598 266 RLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLK 345 (902)
Q Consensus 266 RLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LK 345 (902)
.++..+..-..|. .+.....|++.. + ++.....+..+..++..++.+...|.
T Consensus 865 ~~~~~l~~~~~~~-~~~~l~~e~~~~--d-------------------------~~~l~~~l~~l~~~l~~l~~~~~~l~ 916 (1111)
T PF13514_consen 865 DLERQLERQADGL-DLEELEEELEEL--D-------------------------PDELEAELEELEEELEELEEELEELQ 916 (1111)
T ss_pred HHHHHHHhhcCcc-cHHHHHHHhhcc--C-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664444332 123333333210 1 00111234567777888888888888
Q ss_pred HHHhhhhhhhhHHHH--HHHHhhhhhhHHHHHHHHH
Q 002598 346 EVLDKKTNELQFSRT--MYARAASKLSEVESQIEEL 379 (902)
Q Consensus 346 e~Lakkn~ELq~sr~--m~a~taskLs~~e~ql~~l 379 (902)
+-++..+.+|+.... -|+.....+..+.+++..+
T Consensus 917 ~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 917 EERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 888888887775432 3555555666666666644
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.16 E-value=37 Score=44.34 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=38.9
Q ss_pred HHHHHHHhhcccchhHHHHh-HHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhh
Q 002598 54 DKLFSALAECNAKDDLVKKH-AKMAQEAI----TGREKAEAEVVSLKQELDAALQQRDTGEERLI 113 (902)
Q Consensus 54 eKLs~al~~~~~Kd~lVkqh-aKvaeEAV----~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvs 113 (902)
++|.....++.-++.-+-|| .|.++|=+ .--.+.++++..++.+|+.+++.+..+.+...
T Consensus 475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~ 539 (1317)
T KOG0612|consen 475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56655555555444444444 36666544 45667888888999999999887777744433
No 63
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.12 E-value=7 Score=39.45 Aligned_cols=90 Identities=26% Similarity=0.309 Sum_probs=60.1
Q ss_pred HHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHhhhhh
Q 002598 97 ELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILE---EKLAETSKRLAKLGVEN 173 (902)
Q Consensus 97 qLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE---~KL~Ea~k~L~~~~aEn 173 (902)
.|-.+...+..++++|-.|+ ++|..+++.++.-+-++-.. ..+.+.++.+++ ..+..+..+|..++.|+
T Consensus 11 kLK~~~~e~dsle~~v~~LE-------reLe~~q~~~e~~~~daEn~-k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLE-------RELEMSQENKECLILDAENS-KAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776665 56677788888888888776 567766665555 45555556777777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhh
Q 002598 174 THLTKALLAKEKLIEDLGKQR 194 (902)
Q Consensus 174 ~~L~~al~~k~~~i~eL~e~k 194 (902)
..|.+.|+.+-.-|.+|-...
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777777765554454443333
No 64
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.76 E-value=34 Score=42.97 Aligned_cols=175 Identities=17% Similarity=0.243 Sum_probs=97.5
Q ss_pred HHHhhhhHhhhhhhhhHHHHHHHHHhhhhh------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 002598 101 ALQQRDTGEERLIHLDAALKECMDQLHFVR------EEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK---RLAKLGV 171 (902)
Q Consensus 101 a~~q~~~lEdRvshLD~ALKeCmrQLr~~r------EEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k---~L~~~~a 171 (902)
.++.-..+..-|..|++-||+.-+|||.++ |-+-|++++++.-.-.+....+.+||+--+++.+ +|..-+.
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 344445566667788888999888888763 5566778887776544444444455533333322 2222233
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH------------------HHHHH
Q 002598 172 ENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE------------------LEIRN 233 (902)
Q Consensus 172 En~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE------------------LEIR~ 233 (902)
|---...+|..|-..|.+++.+.. ..++..-.+|..|-|-+..+-++ .+|..
T Consensus 163 eIf~~~~~L~nk~~~lt~~~~q~~----------tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ 232 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELNEFNMEFQ----------TKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLK 232 (1265)
T ss_pred HHHHHHHHHhhhhhHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555544443 34444444444444433322222 56677
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhcCCChHHHhhhhHH-HHhh
Q 002598 234 EEREFNRRTADESHKQHLESVKK------------------IAKLESECQRLRVLVRKRLPGPAALAKMKNE-VEIL 291 (902)
Q Consensus 234 eERels~qSaeaA~KQhlEsvKK------------------IaKLEAECqRLR~lvRK~lPgpAala~Mk~E-ve~l 291 (902)
+++.|+ +++|.++-++| |..=+.+..-|+..+-+-+.-.-.+.+|.+| ++.+
T Consensus 233 ev~QLs------s~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~l 303 (1265)
T KOG0976|consen 233 EVMQLS------SQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTL 303 (1265)
T ss_pred HHHHHH------HhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 777776 34555554443 4444556666777777777777777777664 4443
No 65
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.60 E-value=0.56 Score=48.30 Aligned_cols=66 Identities=30% Similarity=0.266 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK 219 (902)
..+..|.++..++..+..+...|...|.+|.+.+..|+++.......++.+..++..+++||..|=
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666666677778888888888888888888888888999999999998873
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.55 E-value=13 Score=40.47 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhh
Q 002598 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE 131 (902)
Q Consensus 85 EKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rE 131 (902)
.||.+|...+++-+.+.......++..|+.++.-|.+-=+++..+++
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555444433
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.03 E-value=5.3 Score=40.48 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHH
Q 002598 158 KLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG 226 (902)
Q Consensus 158 KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lq 226 (902)
++.+.++++..+..|...+.+.+.+-..-+..+++..............+++.++..+..+..|++.+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444445556667777777777777777777777
No 68
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.94 E-value=12 Score=36.75 Aligned_cols=125 Identities=23% Similarity=0.272 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002598 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE--EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRL 166 (902)
Q Consensus 89 ~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rE--EqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L 166 (902)
.+..++...+..+..+...++.++..+-.-|+.-....+.+++ |+|--.|...++.-. .|...+.+++.++
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~-------~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQ-------QLREELQELQQEI 75 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4455555555555555555555544444444333333333332 223334444433222 2333344444444
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHH
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~ 223 (902)
..++++.......|.. .-....+++...+.++..+..|++.+..+|.-|=--|.
T Consensus 76 ~~l~~~~~~a~~~l~~---~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 76 NELKAEAESAKAELEE---SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544444444433 22334556667788888899999999999987755443
No 69
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=91.78 E-value=20 Score=38.20 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=115.2
Q ss_pred HHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q 002598 70 VKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAA---LKECMDQLHFVREEQEQRIHDAVMKASM 146 (902)
Q Consensus 70 VkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~A---LKeCmrQLr~~rEEqEqki~eav~k~s~ 146 (902)
+.++-.-|-.-+.+=++....+..+++.++.+......+...+..+-.+ ...-.. ..--++=+++|..+... =.
T Consensus 19 ~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~--~~s~~eLeq~l~~~~~~-L~ 95 (240)
T PF12795_consen 19 LIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILA--NLSLEELEQRLSQEQAQ-LQ 95 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcc--cCCHHHHHHHHHHHHHH-HH
Confidence 3344444445555666677788889999999999998888888887554 222222 12234556777777776 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhh--hhcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 147 EFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQA--EADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 147 Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~a--e~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
+|..-...+..+|...+....++...-+.....+++ ++..+... ..+-..-.++.-.++-|...|+.++.+
T Consensus 96 ~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~e-------i~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~ 168 (240)
T PF12795_consen 96 ELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQE-------IRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEM 168 (240)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH-------HHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888777777665554444442 33333221 000111235555555566666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 225 LGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 225 lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
++.+|..-+.-.+ .+..|.-...++|..|+.+.+-|+.++-
T Consensus 169 le~el~s~~~rq~-------L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 169 LEQELLSNNNRQE-------LLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHCcHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554443333 3345555667889999999999998873
No 70
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.62 E-value=51 Score=42.43 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=66.4
Q ss_pred chhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHh
Q 002598 793 AGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (902)
Q Consensus 793 s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ 872 (902)
+..++++..|.-+....+.-.+.+...++....|+.|.+.++..-++.+.|+..+..--++|.+.+..+++++..+..-.
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~ 866 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDV 866 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 34445555555555555555556666677777788888888888888888888888888888888888888888777777
Q ss_pred hhhHHHhhhhhhc
Q 002598 873 SSLEVELEDKSNC 885 (902)
Q Consensus 873 ssLE~ELe~~k~~ 885 (902)
..+..+|.+.+..
T Consensus 867 ~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 867 KKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 71
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.51 E-value=22 Score=38.00 Aligned_cols=155 Identities=18% Similarity=0.228 Sum_probs=82.5
Q ss_pred HhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHh
Q 002598 47 NDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (902)
Q Consensus 47 ~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQL 126 (902)
.....|..|...-......-..+|...-|+.-..+..|++.... .+..+..++..+-.+-.-+..|+.+.-.-.+..
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~---~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKEL---SEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHh---HHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 44566666666666666666677777778888888777665221 223333344444444444444444444444333
Q ss_pred hhhhhHHH-------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 002598 127 HFVREEQE-------------QRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQ 193 (902)
Q Consensus 127 r~~rEEqE-------------qki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ 193 (902)
...++.=+ +-..+.+.+-.+-++.++.--+.+|.-|+.+++.++..+.+
T Consensus 100 ek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~------------------ 161 (207)
T PF05010_consen 100 EKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQA------------------ 161 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------
Confidence 33322211 01111122223445666666777777777777777766544
Q ss_pred hhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 194 RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 194 ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
+...|++.|--.|=.+.||.-.|..-.+|
T Consensus 162 ------e~~aLqa~lkk~e~~~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 162 ------ELLALQASLKKEEMKVQSLEESLEQKTKE 190 (207)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.49 E-value=15 Score=40.95 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=9.7
Q ss_pred hHHHHhHHH-HHHHhhhhh
Q 002598 68 DLVKKHAKM-AQEAITGRE 85 (902)
Q Consensus 68 ~lVkqhaKv-aeEAV~GwE 85 (902)
.+||.|++. |..+--.|-
T Consensus 125 ~~vK~~aRl~aK~~WYeWR 143 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR 143 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 467788753 333444443
No 73
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.34 E-value=23 Score=37.88 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002598 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (902)
Q Consensus 86 KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~ 165 (902)
.|+++|++++..+-....+.-..++|+.-+ .+...+.-+.-+|.+.-+. ++..+...-+.--.-+|.+|.++.+.
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a----~~KL~Eaeq~~dE~er~~K-v~enr~~kdEE~~e~~e~qLkEAk~i 75 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATA----LQKLEEAEQAADESERGMK-VIENRAQKLEEKMEAQEAQLKEAKHI 75 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcccHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 378888888888887777777777776443 3334444445555444332 22222344443333677888888776
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 166 LAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 166 L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
...+...-....+.|.- .+.++...--|.+..+-.+..|-++++++...
T Consensus 76 aE~adrK~eEVarkL~i--------------iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n 124 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVI--------------IEGELERAEERAEAAESQSEELEEDLRILDSN 124 (205)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 55555554444444432 23344444444455555555555555555444
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.16 E-value=17 Score=36.44 Aligned_cols=21 Identities=10% Similarity=0.174 Sum_probs=10.0
Q ss_pred hhhcHHHHHHhhhhHHHhhHh
Q 002598 197 AEADSNALMVRLDSTEKENAS 217 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~s 217 (902)
.+.....|-.|++.++..+..
T Consensus 120 le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 344444455555555544443
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.10 E-value=23 Score=37.38 Aligned_cols=123 Identities=25% Similarity=0.302 Sum_probs=68.9
Q ss_pred hhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHH-----------HHHHHHHHHHHHHhhhhHhhh
Q 002598 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAE-----------VVSLKQELDAALQQRDTGEER 111 (902)
Q Consensus 43 ~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E-----------~~~lKkqLe~a~~q~~~lEdR 111 (902)
.+|...+..|..+|...--+- .++++--+-=+-|+.+.|..+++ +-.|+.+|-.+..+..+++.+
T Consensus 15 ~~L~n~l~elq~~l~~l~~EN----k~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKEN----KTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666555 33444444445577777777665 445666666666666555555
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 002598 112 LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKAL 180 (902)
Q Consensus 112 vshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al 180 (902)
+-..|+-|-..-.++.. ++..+.. +-... |.+|..+|..+..+++.....+..|.+-|
T Consensus 91 lk~~~~el~k~~~~l~~--------L~~L~~d--knL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKH--------LKKLSED--KNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHc--CCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444333332 3333332 22222 45777777777777666665555555443
No 76
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.74 E-value=27 Score=40.03 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 002598 117 AALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLI 187 (902)
Q Consensus 117 ~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i 187 (902)
+++..+..|...--..|-.+...|+.+.-.|...++.+||.++.+..+++..+..+...|-+|+..|+.-+
T Consensus 225 ~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~l 295 (384)
T PF03148_consen 225 EDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPL 295 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44444444444444566778888888888999999999999999999999999999888888888877665
No 77
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.63 E-value=44 Score=39.92 Aligned_cols=124 Identities=24% Similarity=0.303 Sum_probs=79.6
Q ss_pred hhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHH
Q 002598 208 LDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNE 287 (902)
Q Consensus 208 Les~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~E 287 (902)
++.+.....+..|+|..+..+|.-....-+++ -..+..+++....++.+.||.-|.+..+..-+.+
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~d--------------p~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFD--------------PERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33444444444555555555544444433333 2336779999999999999999998887655544
Q ss_pred HHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 002598 288 VEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAAS 367 (902)
Q Consensus 288 ve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~tas 367 (902)
.+.- . ..+...-..+..++.+-..+++-+.+...+|-..|...|....
T Consensus 334 l~~e--------L------------------------~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~ 381 (563)
T TIGR00634 334 IKEE--------L------------------------DQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA 381 (563)
T ss_pred HHHH--------H------------------------HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4420 0 0112223567778888888888888889999888888888766
Q ss_pred hhhHHHHHHHHH
Q 002598 368 KLSEVESQIEEL 379 (902)
Q Consensus 368 kLs~~e~ql~~l 379 (902)
+ .+...+..|
T Consensus 382 ~--~v~~~l~~L 391 (563)
T TIGR00634 382 K--RVEQELKAL 391 (563)
T ss_pred H--HHHHHHHhC
Confidence 3 556666654
No 78
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.58 E-value=4.6 Score=42.95 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=44.8
Q ss_pred HhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhhc
Q 002598 849 MINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLE 901 (902)
Q Consensus 849 ~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QLe 901 (902)
.........++.+++.|.....++.|||..|+-+..-++||-.-|-||=-+++
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556677789999999999999999999999999999999999966553
No 79
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.58 E-value=46 Score=40.02 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=67.9
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQ 265 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECq 265 (902)
..+.+.+++......+..+..+++.-..-.+.+..++..+.+.|+--.++-.==.......++...+.-+++.+|....+
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777788888888888776655554444444557778888888888888888888
Q ss_pred HHHHHH-HhcCCC-hHH
Q 002598 266 RLRVLV-RKRLPG-PAA 280 (902)
Q Consensus 266 RLR~lv-RK~lPg-pAa 280 (902)
-.+..+ |..||| |..
T Consensus 425 ~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 425 EIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHcCCCCCCHH
Confidence 887666 446888 443
No 80
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.46 E-value=2 Score=38.71 Aligned_cols=70 Identities=31% Similarity=0.373 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~ 223 (902)
.|+.+|++-..+++.+..|-..|++.-+.-.+.|..|+......+..+..|..+++.++++...|+.-+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778888888888889999999999999999999999999998999999999999999988888876543
No 81
>PRK09039 hypothetical protein; Validated
Probab=90.19 E-value=4.5 Score=45.62 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHH---------------------
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQ--------------------- 843 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Q--------------------- 843 (902)
.+++...+.+-..|+.++..-.+-+..-+......+..|..|+.++.+++..+..++.+
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~ 124 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 35666777777888888887777777777788888999999999999888888888875
Q ss_pred HHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhh
Q 002598 844 VKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (902)
Q Consensus 844 l~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QL 900 (902)
+..++..|.+.-.+..-++.+|..++.++.+|+.+|..-..-=.+..++-.+|+..|
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555666666666666666666554444444444444444443
No 82
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.97 E-value=45 Score=39.00 Aligned_cols=278 Identities=23% Similarity=0.283 Sum_probs=153.4
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHHH-HHHHh-------------hhhhhhhHHHHHHHHHHHHHHHhhhhHhhh
Q 002598 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAKM-AQEAI-------------TGREKAEAEVVSLKQELDAALQQRDTGEER 111 (902)
Q Consensus 46 ~~~~k~LneKLs~al~~~~~Kd~lVkqhaKv-aeEAV-------------~GwEKAE~E~~~lKkqLe~a~~q~~~lEdR 111 (902)
++....|.|-.+.-+-+. +++.--|-|- .--|. -|-+--+.||-+|+.||+.-..+.-+++.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 566777777777666554 2333333322 22222 255666889999999999988887666655
Q ss_pred hhhhhH--------HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 002598 112 LIHLDA--------ALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAK 183 (902)
Q Consensus 112 vshLD~--------ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k 183 (902)
+..+++ .=--|.|-+--..+-+.++|.|.-..--+|.+++|-+-+.=|+|--. ....-..++.+|- +
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETA---ATiSAIEAMKnAh--r 395 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETA---ATISAIEAMKNAH--R 395 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHH--H
Confidence 444432 12246666666666666777776666667777777665555554321 0001112222322 4
Q ss_pred HHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH-----HHHHHHHHHhhhh--hhH---------hHH
Q 002598 184 EKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-----LEIRNEEREFNRR--TAD---------ESH 247 (902)
Q Consensus 184 ~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE-----LEIR~eERels~q--Sae---------aA~ 247 (902)
+.|.++|....+ +.++..+|.... .-+..+++.||.|+++. ||+---++.+..+ +-- -||
T Consensus 396 EEmeRELeKsqS-vnsdveaLRrQy---leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaH 471 (593)
T KOG4807|consen 396 EEMERELEKSQS-VNSDVEALRRQY---LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAH 471 (593)
T ss_pred HHHHHHHHhhhc-cccChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 667777766664 455555554321 22445778888888766 4433322222110 000 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchh
Q 002598 248 KQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRI 327 (902)
Q Consensus 248 KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~ 327 (902)
.|.|. .+|=||.-|||+++-- -. -| +.-++. ..|..
T Consensus 472 NQELn-----nRLaaEItrLRtlltg----dG-----------gG-----tGspla-------------------qgkda 507 (593)
T KOG4807|consen 472 NQELN-----NRLAAEITRLRTLLTG----DG-----------GG-----TGSPLA-------------------QGKDA 507 (593)
T ss_pred HHHHh-----hHHHHHHHHHHHHhcc----CC-----------CC-----CCCccc-------------------cCcch
Confidence 33332 3677888888888621 10 01 111111 11222
Q ss_pred hhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHH------------------HHHHhhhhhhHHHHHHHHH
Q 002598 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRT------------------MYARAASKLSEVESQIEEL 379 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~------------------m~a~taskLs~~e~ql~~l 379 (902)
--|-+=|...|-|..-||+-+..--.|||.+.. .-|+..+-+++|..||+-.
T Consensus 508 yELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaA 577 (593)
T KOG4807|consen 508 YELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAA 577 (593)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 234455667788888888888877788886542 2255677788888888743
No 83
>PRK03918 chromosome segregation protein; Provisional
Probab=89.83 E-value=60 Score=40.21 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=21.5
Q ss_pred hhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHH
Q 002598 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMY 362 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~ 362 (902)
.-+..++..++.+.+.|++-+..=+.++..-+..+
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 489 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVL 489 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666665555555444443
No 84
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.58 E-value=48 Score=41.22 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=20.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 242 TADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 242 SaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
|-..|.+|.......|-+=|.|+..|++=+
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666777888888888887643
No 85
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.45 E-value=42 Score=37.90 Aligned_cols=183 Identities=26% Similarity=0.242 Sum_probs=99.2
Q ss_pred hhhhhHhHhhhHHHHHHHHhhcc----cchhHHHHhHHHHHHHhhhhhhhhHHH-------HHHHHHHHHHHHhhhhHhh
Q 002598 42 KAELENDVKNLNDKLFSALAECN----AKDDLVKKHAKMAQEAITGREKAEAEV-------VSLKQELDAALQQRDTGEE 110 (902)
Q Consensus 42 ~~~l~~~~k~LneKLs~al~~~~----~Kd~lVkqhaKvaeEAV~GwEKAE~E~-------~~lKkqLe~a~~q~~~lEd 110 (902)
++.|+..|.+.--+|++|+.+.. +|-|+=----..-.|=+.=++|---++ ..|-+||-.+..+...|+.
T Consensus 86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~ 165 (305)
T PF14915_consen 86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEI 165 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999852 232221111112223334446655555 3455788899999999999
Q ss_pred hhhhhhHHHHHHHHHhhhhhhHHHH---HHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002598 111 RLIHLDAALKECMDQLHFVREEQEQ---RIHD----------AVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLT 177 (902)
Q Consensus 111 RvshLD~ALKeCmrQLr~~rEEqEq---ki~e----------av~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~ 177 (902)
.+.|.-+||++..==|..++-+-.| ++.+ -+.+-...|+ -+|.+|+.++.+=.=++-.-...-
T Consensus 166 elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe----s~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 166 ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE----SLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987544444332221 1111 1222222222 244445544431111111111111
Q ss_pred HHHHHHHHHHHHHHhhhh------hhhhc--HHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 178 KALLAKEKLIEDLGKQRT------QAEAD--SNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 178 ~al~~k~~~i~eL~e~ks------~ae~e--~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
+-...|+++|..+..+.. +++.+ .--|..|-..+-.++.-||--+...++|
T Consensus 242 ~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 242 NKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222457888888877663 22222 2224455555666666666666555554
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.21 E-value=4.5 Score=46.94 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHh
Q 002598 159 LAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (902)
Q Consensus 159 L~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERel 238 (902)
......++...+||..++...++.|+..+.+|+++..+...+. .+.+.+ ++.-++.++..-.++.-+.+++|++
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~----v~~~a~--~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER----VREEAT--EKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666777777788888888888888887776543332 222222 2333455555556667777888888
Q ss_pred hhhhhHhHHH
Q 002598 239 NRRTADESHK 248 (902)
Q Consensus 239 s~qSaeaA~K 248 (902)
..|.|+..++
T Consensus 103 ~~q~~e~~n~ 112 (459)
T KOG0288|consen 103 REQKAEFENA 112 (459)
T ss_pred HHhhhhhccc
Confidence 8777665443
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.09 E-value=54 Score=38.63 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
.++.-..+..++.+=.++...+....++...|...+++|.++...|..+++ .-+.+++.+...-..|+.++..
T Consensus 170 ~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~-------~~q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS-------ADQKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHH
Confidence 344444455555555555555556667777788888888888876665554 4456666666666666666665
Q ss_pred HHHHHH
Q 002598 225 LGKELE 230 (902)
Q Consensus 225 lqKELE 230 (902)
+..+..
T Consensus 243 ~e~~aA 248 (420)
T COG4942 243 AEAAAA 248 (420)
T ss_pred HHHHHH
Confidence 554433
No 88
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.96 E-value=34 Score=38.89 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhh---HHHHHHHHHhhhh--hh--------HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002598 91 VVSLKQELDAALQQRDTGEERLIHLD---AALKECMDQLHFV--RE--------EQEQRIHDAVMKASMEFEQSLMILEE 157 (902)
Q Consensus 91 ~~~lKkqLe~a~~q~~~lEdRvshLD---~ALKeCmrQLr~~--rE--------EqEqki~eav~k~s~Ewek~r~eLE~ 157 (902)
+..|-+.||..+.+.-.+.-.+.+|- .+||...+.+-.. +. ..-..+...+.. +++--+ -|..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~-sre~Nk---~L~~ 86 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSE-SREQNK---KLKE 86 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHH-HHHHHH---HHHH
Confidence 34577888888887766666666655 5555555444311 00 011222222222 333222 5556
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHH
Q 002598 158 KLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEERE 237 (902)
Q Consensus 158 KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERe 237 (902)
.+.++.++|..+.-++..|...+....-.-..+ ... ..-.+-..|-..|+.+.+.+..|.++|+.+--|.+-...||+
T Consensus 87 Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~-~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 87 EVEELRQKLNEAQGDIKLLREKLARQRVGDEGI-GAR-HFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhhhhhccc-ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677666777666555443211100000 000 111445677888999999999999999999999999999998
Q ss_pred hhhh
Q 002598 238 FNRR 241 (902)
Q Consensus 238 ls~q 241 (902)
+=+.
T Consensus 165 ~yk~ 168 (319)
T PF09789_consen 165 AYKC 168 (319)
T ss_pred HHHH
Confidence 7543
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.89 E-value=4.1 Score=43.20 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
.+|+....+|+.+++..++.+.++..+|..
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~ 143 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQSDSVINGLKEENQK 143 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777778888888877776666666654
No 90
>PRK09039 hypothetical protein; Validated
Probab=88.79 E-value=47 Score=37.71 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 002598 154 ILEEKLAETSKRLAKLGVE 172 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aE 172 (902)
+++.+++.+..+|...+++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~ 131 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQV 131 (343)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 91
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.79 E-value=0.13 Score=63.87 Aligned_cols=207 Identities=30% Similarity=0.377 Sum_probs=0.0
Q ss_pred hhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhh--hhHhhhhhhhhH--H
Q 002598 43 AELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQR--DTGEERLIHLDA--A 118 (902)
Q Consensus 43 ~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~--~~lEdRvshLD~--A 118 (902)
.+|...+-.|++.|-.+.....+--++-+ |=|+|+..||++|++...+. ...+=|-.|.+. .
T Consensus 70 ~dL~~ELe~l~~~Lee~~~~t~aq~E~~k--------------krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~e 135 (859)
T PF01576_consen 70 RDLSEELEELKERLEEAGGATQAQIELNK--------------KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAE 135 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCcHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556666677777655555443333332 44678888888888755432 222224445443 3
Q ss_pred HHHHHHHhhhhhhHHH-------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHhhh
Q 002598 119 LKECMDQLHFVREEQE-------------QRIHDAVMKASMEFEQSLMILEEKLAETSK--------------RLAKLGV 171 (902)
Q Consensus 119 LKeCmrQLr~~rEEqE-------------qki~eav~k~s~Ewek~r~eLE~KL~Ea~k--------------~L~~~~a 171 (902)
|.+-+.++..++..-| ..-.+.+.+.....++.+..||..|.+++. ...++.+
T Consensus 136 L~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~ 215 (859)
T PF01576_consen 136 LNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQS 215 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443322 111122333344555555566666666544 4456777
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 002598 172 ENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHL 251 (902)
Q Consensus 172 En~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhl 251 (902)
|+..|.+.|.+.+..+..|...+...++.+.+++..|+.--+....|...++.++.+++-..+..+=. ...+.
T Consensus 216 E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE-----~e~k~-- 288 (859)
T PF01576_consen 216 ENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEE-----EEAKS-- 288 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhh-----hhhHH--
Confidence 78888888888777777777777777778888888888777777777777777777776655544321 11222
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002598 252 ESVKKIAKLESECQRLRVL 270 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~l 270 (902)
+.-+.+.++.+|+.-||.-
T Consensus 289 ~l~~qlsk~~~El~~~k~K 307 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKK 307 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 2335666777777776543
No 92
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.71 E-value=10 Score=38.25 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHH
Q 002598 810 NSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEEL 889 (902)
Q Consensus 810 e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceel 889 (902)
+++-..|+-++.....+..+.++.+.--.-++++|.-++.-..+| +.+|..+...-..|..+|+.++.--.||
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L-------~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL-------ELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333332 2333333333334444444444444445
Q ss_pred HHHHHHHH
Q 002598 890 EATCLELQ 897 (902)
Q Consensus 890 ea~C~ELq 897 (902)
+..+.++.
T Consensus 100 E~~~~~~~ 107 (140)
T PF10473_consen 100 ESLNSSLE 107 (140)
T ss_pred HHHhHHHH
Confidence 44444443
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.69 E-value=42 Score=41.22 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHH
Q 002598 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALK 120 (902)
Q Consensus 88 E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALK 120 (902)
+.++..+..+|..++.+..+.+-|...+...|+
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~ 268 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666666666555554
No 94
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.62 E-value=69 Score=39.32 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=99.7
Q ss_pred hhhhhhhHHH----HHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhH---HHHHHHHHHHHHhhHHHHHHH-
Q 002598 82 TGREKAEAEV----VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREE---QEQRIHDAVMKASMEFEQSLM- 153 (902)
Q Consensus 82 ~GwEKAE~E~----~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEE---qEqki~eav~k~s~Ewek~r~- 153 (902)
.-|++++.+- .-|+.+....+.|+..++.++..|..|++.--.|+-.++-- .----++-+.-+..+++..+.
T Consensus 171 ~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~r 250 (629)
T KOG0963|consen 171 ETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQR 250 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443 23667777888899999999999999999888877665433 122233444445566665543
Q ss_pred --HHHHHHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHhhhhhhhh----cHHHHHHhhhhHHHhhHhhh
Q 002598 154 --ILEEKLAETSKRLAKLG--------VENTHLTKALLAKEKLIEDLGKQRTQAEA----DSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 154 --eLE~KL~Ea~k~L~~~~--------aEn~~L~~al~~k~~~i~eL~e~ks~ae~----e~~~L~~rLes~EKEN~sLK 219 (902)
.||.....+..++..+. .+-.++.-.|..|+..|..|.....+.++ +...+.+.+..+++++.+.+
T Consensus 251 i~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 251 IVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444443221 22345566677788888888887764433 44567788888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002598 220 YEVRVLGKELEIR 232 (902)
Q Consensus 220 yEl~~lqKELEIR 232 (902)
-++..+.+.|+-|
T Consensus 331 ~~leel~~kL~~~ 343 (629)
T KOG0963|consen 331 SELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888887776
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.59 E-value=12 Score=36.57 Aligned_cols=13 Identities=38% Similarity=0.371 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHh
Q 002598 887 EELEATCLELQLQ 899 (902)
Q Consensus 887 eelea~C~ELq~Q 899 (902)
.++..+|.+|..|
T Consensus 108 ~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 108 SELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3556667776654
No 96
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.33 E-value=32 Score=44.74 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 244 DESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 244 eaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
|.+..|+-..-++|..||++.+.|+..+-
T Consensus 204 ~L~~~q~dl~~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 204 ELARLRSELAKKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777778889999999999998764
No 97
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.22 E-value=24 Score=37.48 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred hhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHH
Q 002598 194 RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEE 235 (902)
Q Consensus 194 ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eE 235 (902)
..........++.+++.+.+++..+|..+..+...++-|...
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555555555555555554443
No 98
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.07 E-value=4.7 Score=47.24 Aligned_cols=100 Identities=32% Similarity=0.372 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002598 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK 164 (902)
Q Consensus 85 EKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k 164 (902)
+..-.|+.++++.+.++...+-..+.|...+..-+|+|..||...||+..-.+.. ..-|-. ||.+.
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn-----q~vw~~-------kl~~~-- 422 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN-----QDVWRG-------KLKEL-- 422 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHH-------HHHHH--
Confidence 3445677888888888888888999999999999999999988887655432222 122221 22222
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHH
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEK 213 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EK 213 (902)
+..+..++.+++..|.+|.+++ .+||.-|++-+|
T Consensus 423 --------~e~~~~~~~s~d~~I~dLqEQl-------rDlmf~le~qqk 456 (493)
T KOG0804|consen 423 --------EEREKEALGSKDEKITDLQEQL-------RDLMFFLEAQQK 456 (493)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHH-------HhHheehhhhhh
Confidence 2233445677888999999887 577877777654
No 99
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.04 E-value=75 Score=39.05 Aligned_cols=67 Identities=30% Similarity=0.364 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKY 220 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKy 220 (902)
+|-.+|+|++..+-++.-+|-.|..+|+.-..+.++|..........+..++.+++....|..+|+.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8889999999988888988888899999999999999999999999999999999988888877754
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.75 E-value=12 Score=37.76 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 002598 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKS 836 (902)
Q Consensus 805 ~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s 836 (902)
-..++..|+.++.+..+.+..|+++|.+|...
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456777777788888888888887777653
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.61 E-value=7.3 Score=39.01 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=26.2
Q ss_pred cccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 002598 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKS 836 (902)
Q Consensus 788 ~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s 836 (902)
++.++...+.++.+....-.++.+|..+.+-.|.-+..+..+|..++..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544443
No 102
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.11 E-value=1e+02 Score=39.59 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=89.8
Q ss_pred HHHhhhhHhhhhhhhhH---HHHHHHHH------------hhhhhhHHHHHHHHHHHHH-------hhHHHHHHHHHHHH
Q 002598 101 ALQQRDTGEERLIHLDA---ALKECMDQ------------LHFVREEQEQRIHDAVMKA-------SMEFEQSLMILEEK 158 (902)
Q Consensus 101 a~~q~~~lEdRvshLD~---ALKeCmrQ------------Lr~~rEEqEqki~eav~k~-------s~Ewek~r~eLE~K 158 (902)
.++.+.++.+|+..|+- -||.-|.. +.+ -|.|-.|+.||+.+. ++...++..+||.|
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkq-lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k 408 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQ-LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK 408 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445556666666553 34554432 111 145557777776653 34555666666655
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHh
Q 002598 159 LAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (902)
Q Consensus 159 L~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERel 238 (902)
-.|. ..++.-...|++-+..=+-.|.+|+++...| ++ ..+..+.+--.|.-|---+..|+++.+-....+++
T Consensus 409 ~sE~----~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA---lG-AE~MV~qLtdknlnlEekVklLeetv~dlEalee~ 480 (1243)
T KOG0971|consen 409 NSEL----EELRRQKERLSRELDQAESTIADLKEQVDAA---LG-AEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEM 480 (1243)
T ss_pred hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc-HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 2223333345555555556677777766532 11 11233333344555556677778888888888999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHH
Q 002598 239 NRRTADESHKQHLESVKKIAKL 260 (902)
Q Consensus 239 s~qSaeaA~KQhlEsvKKIaKL 260 (902)
..|-++..+.+.++.-+.|..|
T Consensus 481 ~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 481 NEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777
No 103
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.95 E-value=55 Score=36.29 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=54.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhH
Q 002598 141 VMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKY 220 (902)
Q Consensus 141 v~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKy 220 (902)
++...++.+.++...+..+.++...... +-..|++..+.+.+-|.. +.++.-+...+..+=..=.+|..+++
T Consensus 122 Ia~L~rqlq~lk~~qqdEldel~e~~~~---el~~l~~~~q~k~~~il~-----~~~~k~~~~~~~~l~~~~~~N~~m~k 193 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDELDELNEMRQM---ELASLSRKIQEKKEEILS-----SAAEKTQSPMQPALLQRTLENQVMQK 193 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----HHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 3344455666666666666666554322 223344444443333321 01111112222333333367777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 221 EVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 221 El~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
|+....++.+ +....|.+|.||++.|+..++
T Consensus 194 ei~~~re~i~---------------------el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 194 EIVQFREEID---------------------ELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhc
Confidence 7765544332 334578999999999999986
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.83 E-value=58 Score=36.45 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCChHHHhhhhHHHHhhcC
Q 002598 256 KIAKLESECQRLRVLVR-KRLPGPAALAKMKNEVEILGR 293 (902)
Q Consensus 256 KIaKLEAECqRLR~lvR-K~lPgpAala~Mk~Eve~lg~ 293 (902)
++.+|.+|.+.+..... .+.+...-+..+|.+|+.|-+
T Consensus 252 ~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 252 QKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34444444444444432 344566677888888887753
No 105
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.78 E-value=49 Score=38.36 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=16.8
Q ss_pred HHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHH
Q 002598 190 LGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (902)
Q Consensus 190 L~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~ 223 (902)
|...+..++++...+..++..+.++...++.++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555444
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.38 E-value=88 Score=38.10 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHhHHHhHHHHHHHhhhhh
Q 002598 326 RINFLTEQLRAMEEENNSLKEVLDKKTN 353 (902)
Q Consensus 326 ~~~~l~erL~~~EeEnk~LKe~Lakkn~ 353 (902)
.+.-+..++..+++|...+.+-|+.-..
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556777888888888888887776433
No 107
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.24 E-value=18 Score=36.75 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q 002598 800 ECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIE 841 (902)
Q Consensus 800 ~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E 841 (902)
.++......+..+..++.+.++.+..+.+++..+++......
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444445555555555555555555555544444333
No 108
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.83 E-value=82 Score=37.58 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=91.7
Q ss_pred hHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHh---hhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002598 68 DLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGE---ERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKA 144 (902)
Q Consensus 68 ~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lE---dRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~ 144 (902)
..-|||.-.-.++=+|--+++-+...+.+.|-....-..++. .-++.|.+-|++. .++ +...
T Consensus 248 ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~-----------~~~----~~~l 312 (521)
T KOG1937|consen 248 AEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAEL-----------NKQ----MEEL 312 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHH-----------HHH----HHHH
Confidence 345788766666667776766666555433322222222211 1222333333222 222 3344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
+++|++.|.-|..|..-+.+++.....|..-+ +-|. ..+.++.++-.+.+.-|-.+..|+-|+..
T Consensus 313 tqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~--------~~Iq-------eleqdL~a~~eei~~~eel~~~Lrsele~ 377 (521)
T KOG1937|consen 313 TQQWEDTRQPLLQKKLQLREELKNLETEDEEI--------RRIQ-------ELEQDLEAVDEEIESNEELAEKLRSELEK 377 (521)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcccchHHHH--------HHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 79999999999999888888776666553221 1222 24445555556666666777777777776
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 225 LGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVL 270 (902)
Q Consensus 225 lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~l 270 (902)
+-+... .+.|.++. .|.++-|-|++++..+.-.=
T Consensus 378 lp~dv~----rk~ytqri--------kEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 378 LPDDVQ----RKVYTQRI--------KEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred CCchhH----HHHHHHHH--------HHHHhHHHHHHHHHHHHHHH
Confidence 655443 44555555 56666777777777766443
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=85.40 E-value=1.1e+02 Score=38.29 Aligned_cols=287 Identities=21% Similarity=0.254 Sum_probs=141.6
Q ss_pred hhhhHhHhhhHHHHHHHHhh--cccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhh---------
Q 002598 43 AELENDVKNLNDKLFSALAE--CNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEER--------- 111 (902)
Q Consensus 43 ~~l~~~~k~LneKLs~al~~--~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdR--------- 111 (902)
.-+.+.+|+|.+-|+++|.- ...||..+.+- -+|.|-.+-++.-..+.-+++-..+|
T Consensus 426 Dalr~e~kslk~ela~~l~~DeLaEkdE~I~~l------------m~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ 493 (961)
T KOG4673|consen 426 DALRREQKSLKKELAAALLKDELAEKDEIINQL------------MAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKK 493 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 34677789999999999875 34455555442 24555555443333444444433333
Q ss_pred ---hhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---
Q 002598 112 ---LIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL---MILEEKLAETSKRLAKLGVENTHLTKALLA--- 182 (902)
Q Consensus 112 ---vshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r---~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~--- 182 (902)
|..|..-+ +.++++...++|-|...+++|-+-..+....+ .++...+++++.++....|-|+.+..-|+-
T Consensus 494 ge~i~~L~sE~-~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 494 GELITKLQSEE-NKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred hhHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 22232222 34566667788888888888877665553322 222333444433333222222222221211
Q ss_pred --------HHH----HHHHHHhhhhh-----------hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH--HHHHHHHH
Q 002598 183 --------KEK----LIEDLGKQRTQ-----------AEADSNALMVRLDSTEKENASLKYEVRVLGKEL--EIRNEERE 237 (902)
Q Consensus 183 --------k~~----~i~eL~e~ks~-----------ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL--EIR~eERe 237 (902)
+.. -+.+||.-+.. .--++++||.||+..|.-|..|-.+|-.-..=| .|-+--+.
T Consensus 573 lkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~t 652 (961)
T KOG4673|consen 573 LKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQET 652 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 111 13345544442 234678888888888888887766653322221 22223344
Q ss_pred hhhhhhHhHHHHHHHHHH----------HHHHHHH--HHHHHHHHHHhcCCC-hHHHhhhhHHHHhhcCCChhhhhccCC
Q 002598 238 FNRRTADESHKQHLESVK----------KIAKLES--ECQRLRVLVRKRLPG-PAALAKMKNEVEILGRESPETRRKRLN 304 (902)
Q Consensus 238 ls~qSaeaA~KQhlEsvK----------KIaKLEA--ECqRLR~lvRK~lPg-pAala~Mk~Eve~lg~d~~e~rrrr~~ 304 (902)
++.++ +||.....++. .|+-+++ |-|.|=.+ +=.||. |--++=|+.|-..|...--..|-| .+
T Consensus 653 l~~~~--tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~-~~~l~s~~~q~sllraE~~~l~~~le~e~nr-~~ 728 (961)
T KOG4673|consen 653 LSKAA--TAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSL-NFSLPSSPIQLSLLRAEQGQLSKSLEKERNR-AA 728 (961)
T ss_pred Hhhhh--hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 55444 56665433332 1222222 22222221 112343 666677888877654321111111 11
Q ss_pred CCCCCcccccCCCCCCCC--CcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHH
Q 002598 305 SSPLGSMVDSAFDNPPDT--PSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTM 361 (902)
Q Consensus 305 ~~~~~~~~~s~~d~~~~~--~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m 361 (902)
- +.... ...+++.|-.|..-++.|.+.+|+.+ +.+||-.++.
T Consensus 729 ~------------~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~---~q~lq~~ll~ 772 (961)
T KOG4673|consen 729 E------------NRQEYLAAQEEADTLEGRANQLEVEIRELKRKH---KQELQEVLLH 772 (961)
T ss_pred h------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHH
Confidence 0 00000 01134567777777888888887765 4456666553
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.27 E-value=54 Score=34.64 Aligned_cols=137 Identities=22% Similarity=0.204 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002598 92 VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGV 171 (902)
Q Consensus 92 ~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~a 171 (902)
..+|.=-.+.+.-++++= ..||+-+.+++.--+..+..+.++..+..+=-+-++ .++..+.++.+.|.....
T Consensus 12 ~~iK~YYndIT~~NL~lI-------ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~-~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELI-------KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK-KAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555666677666543 457777777776666666666666555332222222 333444444443333222
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHH-hhhhhhHhHHHHH
Q 002598 172 ENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEERE-FNRRTADESHKQH 250 (902)
Q Consensus 172 En~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERe-ls~qSaeaA~KQh 250 (902)
+-.. +..+++|+..++++...|+.|-.++.+...-...||+ |-.+--.+-..-|
T Consensus 84 dK~~-------------------------L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 84 DKQS-------------------------LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 2345566667777777777777777766666666654 3333333344434
Q ss_pred HHHHHHHHHHH
Q 002598 251 LESVKKIAKLE 261 (902)
Q Consensus 251 lEsvKKIaKLE 261 (902)
..+--|.--||
T Consensus 139 Qk~~~kn~lLE 149 (201)
T PF13851_consen 139 QKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 111
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.18 E-value=1e+02 Score=37.87 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=29.1
Q ss_pred hhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHH
Q 002598 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVE 373 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e 373 (902)
+.+..++.++|-++++.+..|..--..|| +|+-|-.---.|+.|.
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~-~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLN-SRSDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHH
Confidence 34557777788888777777776666665 3466666555555553
No 112
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.01 E-value=56 Score=40.16 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=20.3
Q ss_pred HHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhH
Q 002598 98 LDAALQQRDTGEERLIHLDAALKECMDQLHFVREE 132 (902)
Q Consensus 98 Le~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEE 132 (902)
.+.+.+-..-+++|+..+..-|.+..++|...|.+
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666666666666666666543
No 113
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.99 E-value=1.4e+02 Score=39.83 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=54.1
Q ss_pred HhhhHHHHHHHHhhcccchhHHHHhHH----HHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHH
Q 002598 49 VKNLNDKLFSALAECNAKDDLVKKHAK----MAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (902)
Q Consensus 49 ~k~LneKLs~al~~~~~Kd~lVkqhaK----vaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmr 124 (902)
+..+.++|...-..+.+=..++..|-. ++......|-.+..+...++.++..+......++.++..++..+..--+
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 311 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALER 311 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444544432 5556666777777777777777777777777777777777776666666
Q ss_pred HhhhhhhHHHH
Q 002598 125 QLHFVREEQEQ 135 (902)
Q Consensus 125 QLr~~rEEqEq 135 (902)
++..++.+.+.
T Consensus 312 ~~~~l~~~~~~ 322 (1353)
T TIGR02680 312 EADALRTRLEA 322 (1353)
T ss_pred HHHHHHHHHHH
Confidence 66666555554
No 114
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.88 E-value=1.5e+02 Score=39.52 Aligned_cols=17 Identities=6% Similarity=-0.038 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002598 257 IAKLESECQRLRVLVRK 273 (902)
Q Consensus 257 IaKLEAECqRLR~lvRK 273 (902)
+...+++++.|...+.+
T Consensus 971 ~~~~~~~~~~~~~~~~~ 987 (1353)
T TIGR02680 971 TLDERAEARDHAIGQLR 987 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544433
No 115
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.36 E-value=59 Score=34.34 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=43.1
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCC
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKL----ESECQRLRVLVRKRLP 276 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKL----EAECqRLR~lvRK~lP 276 (902)
...|..|+..+++|-..|..-|...-.+..-+...|.+-. -+|+..| |.==-.|..++...-|
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL-------------EkKl~~l~~~lE~keaqL~evl~~~nl 175 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL-------------EKKLQALSEQLEKKEAQLNEVLAAANL 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666676666666555444444333333333321 1233222 2222345666777789
Q ss_pred ChHHHhhhhHHHHh
Q 002598 277 GPAALAKMKNEVEI 290 (902)
Q Consensus 277 gpAala~Mk~Eve~ 290 (902)
.|+|+..+..-++.
T Consensus 176 dp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 176 DPAALSQVSKKLED 189 (201)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888877775
No 116
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.31 E-value=36 Score=36.90 Aligned_cols=118 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 002598 100 AALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKA 179 (902)
Q Consensus 100 ~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~a 179 (902)
.+...+..|+.|+-+++.-.+...+.|+.. +.++..-.-+ .+.-+..+..|+.+-.++.....++..+... .
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~----e~~a~~Leek-~k~aeeea~~Le~k~~eaee~~~rL~~~~~~---~ 73 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES----EETAEELEEK-LKQAEEEAEELEQKRQEAEEEKQRLEEEAEM---Q 73 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 455666778888888887777777666543 3444443333 4444445556777766666655444443322 1
Q ss_pred HHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 180 LLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 180 l~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
-.+|..+ -..+..+...+..|..-.+.-++|...|+.+|...+..+
T Consensus 74 ~eEk~~L----e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 74 EEEKEQL----EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 222223333344444444445555555555555544443
No 117
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=84.20 E-value=6.8 Score=35.59 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=56.0
Q ss_pred HHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 203 ALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 203 ~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
+....++.+.|||-.||-.++-+.+.|. ..+-...+.+.++..+.=-.++.|-.|+++++.++++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988 3344566889999999888999999999999999876
No 118
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.16 E-value=1e+02 Score=36.91 Aligned_cols=111 Identities=27% Similarity=0.299 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH-HHHH---HHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTK-ALLA---KEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~-al~~---k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
+|+.+|..+...+..+..|-..... -+.. .......+...+..+..++...+..|+.+.-|...|+..+..|..+|
T Consensus 239 ~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL 318 (522)
T PF05701_consen 239 DLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL 318 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766666666443221 1111 12233444555666777777777788877777777777777777777
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 230 EIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 230 EIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
+--..+..-.++ +--...-.|..|++|..+.|.=+
T Consensus 319 e~~K~el~~lke-------~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 319 EKEKEELERLKE-------REKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHH-------HHHHHHhHHhhHHHHHHHHHHHH
Confidence 655554433332 33344456778888887766544
No 119
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.16 E-value=64 Score=38.18 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=22.8
Q ss_pred HHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002598 102 LQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMK 143 (902)
Q Consensus 102 ~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k 143 (902)
.+.+++|+-|+.-|+.-+|+-.=.-...-.|.++|-.++..+
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k 290 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIK 290 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345667777888888777764422222333333444444444
No 120
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=84.06 E-value=1.4e+02 Score=38.57 Aligned_cols=30 Identities=13% Similarity=0.209 Sum_probs=23.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 243 ADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 243 aeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
.+...++..+..+++..+++++.+|..|.+
T Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 884 (1047)
T PRK10246 855 DADNRQQQQALMQQIAQATQQVEDWGYLNS 884 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888888999999988864
No 121
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.79 E-value=16 Score=39.05 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 175 HLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 175 ~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
.|..++..|.--+.....++.+...+...|..++..++.|+..||.++...
T Consensus 56 ~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 56 ELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 333444444444444444444444455566677777777777777777665
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=1.4e+02 Score=37.99 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002598 121 ECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILE 156 (902)
Q Consensus 121 eCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE 156 (902)
+.-|.|..-|||+++|-.+.--...+|.|+.| .||
T Consensus 378 erQReiE~qrEEerkkeie~rEaar~ElEkqR-qle 412 (1118)
T KOG1029|consen 378 ERQREIERQREEERKKEIERREAAREELEKQR-QLE 412 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 44566777777777776666555556666555 444
No 123
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.38 E-value=72 Score=35.61 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHhhhhHhhhhhhh
Q 002598 70 VKKHAKMAQEAITGREKAEAEVV-SLKQELDAALQQRDTGEERLIHL 115 (902)
Q Consensus 70 VkqhaKvaeEAV~GwEKAE~E~~-~lKkqLe~a~~q~~~lEdRvshL 115 (902)
.|||.--+.|..--+--.-.|+. .|..||+.+..++..|+-++..|
T Consensus 25 ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777766666644333323322 24567888888888888877665
No 124
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=49 Score=40.12 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=86.4
Q ss_pred HHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHH
Q 002598 97 ELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLA----------ETSKRL 166 (902)
Q Consensus 97 qLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~----------Ea~k~L 166 (902)
.+|.+...+-.|.++|..|-++|+++|.+|-.++++--+. ..+..+.-++..++..-||.|-. .|.+.+
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL-as~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL-ASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666777888999999999999999999998876653 34444545666666555554443 343344
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH-------HHHHHHHHHhh
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-------LEIRNEEREFN 239 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE-------LEIR~eERels 239 (902)
+.++..- -..++..+...+-+...++..+..+.+++|-.+=.|+....-. |+ .-+++-+
T Consensus 411 ddar~~p------------e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele--r~~kdqn 476 (654)
T KOG4809|consen 411 DDARMNP------------EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE--RHMKDQN 476 (654)
T ss_pred HhhhcCh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC--chhhhhh
Confidence 4333321 1223333333333444455555555555555554444333221 33 4567778
Q ss_pred hhhhHhHHHHHHHHHH
Q 002598 240 RRTADESHKQHLESVK 255 (902)
Q Consensus 240 ~qSaeaA~KQhlEsvK 255 (902)
.++|.--|||++|.-|
T Consensus 477 kkvaNlkHk~q~Ekkk 492 (654)
T KOG4809|consen 477 KKVANLKHKQQLEKKK 492 (654)
T ss_pred hHHhhHHHHHHHHHHH
Confidence 8888888888888644
No 125
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.93 E-value=64 Score=34.31 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=11.0
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~k 194 (902)
++..++.....+.+.+..+.+.+.+++...
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 126
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.44 E-value=1.2e+02 Score=36.41 Aligned_cols=127 Identities=9% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHHhhhhHhhhhhhhhHHHHHHHH---HhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 99 DAALQQRDTGEERLIHLDAALKECMD---QLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 99 e~a~~q~~~lEdRvshLD~ALKeCmr---QLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
.....+..++.+++.++.....+|-. +|+..+.+.. .+..........++..+...+.|++.+++--.++..+-.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINT-SLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666655544444432 3333333321 2222223334556666667777777777655666666666
Q ss_pred hhH-HHHHHHHHHHHHHhhh-----hhhhhcHHHHHHhhhhHHH----hhHhhhHHHHHHH
Q 002598 176 LTK-ALLAKEKLIEDLGKQR-----TQAEADSNALMVRLDSTEK----ENASLKYEVRVLG 226 (902)
Q Consensus 176 L~~-al~~k~~~i~eL~e~k-----s~ae~e~~~L~~rLes~EK----EN~sLKyEl~~lq 226 (902)
|++ +|.+|++-..+.+.+- ......+...+.+++.+++ +..+|+.++..+.
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 5555555554433321 2233334444555555553 3455555554443
No 127
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.34 E-value=1.3e+02 Score=36.80 Aligned_cols=277 Identities=21% Similarity=0.245 Sum_probs=136.2
Q ss_pred hHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002598 68 DLVKKHAKMAQEAITGREKAEAEVVSLKQELD----AALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMK 143 (902)
Q Consensus 68 ~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe----~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k 143 (902)
||+.+|.++.+--..--++++-.+.. |--+| .+..=....+ -.+.++.-||-..++.-..- ..
T Consensus 169 dlI~~~t~~v~~~~l~q~~~ed~~m~-k~f~dy~~~~Y~~fl~g~d-~~~~~~~Elk~~l~~~~~~i-----------~~ 235 (581)
T KOG0995|consen 169 DLIRINTALVEDSPLEQEEAEDKTMN-KLFFDYTIRSYTSFLKGED-NSSELEDELKHRLEKYFTSI-----------AN 235 (581)
T ss_pred HHHHHhHHHhhccchhccchHHHHHH-HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHH-----------HH
Confidence 89999999988776644566666666 44433 3333333333 37778877777776554421 11
Q ss_pred HhhHHHHHHHHHHHHHHHHHH-----------------HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHH
Q 002598 144 ASMEFEQSLMILEEKLAETSK-----------------RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMV 206 (902)
Q Consensus 144 ~s~Ewek~r~eLE~KL~Ea~k-----------------~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~ 206 (902)
...-.++.-.+|+++|.+..+ -+.+..+=-.++-.--+...+.+..|+++....+.++..
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~--- 312 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK--- 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 112222222334444443333 222222222222222344455566666666555555443
Q ss_pred hhhhHHHhhHhhhHHHHHHH---HHHHHHHHHHHhhhhhh-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 207 RLDSTEKENASLKYEVRVLG---KELEIRNEEREFNRRTA-----------DESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 207 rLes~EKEN~sLKyEl~~lq---KELEIR~eERels~qSa-----------eaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
+.++|..||+-+.-|- ++.+--|-||+=-.|-. -.+|++-++.-.-+..||.=.+.+..++|
T Consensus 313 ----lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 313 ----LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred ----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332210 11111222222211111 23455555444444444544555555555
Q ss_pred hcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcch-hhhHHHHHHHhHHHhHHHHHHHhhh
Q 002598 273 KRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKR-INFLTEQLRAMEEENNSLKEVLDKK 351 (902)
Q Consensus 273 K~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~-~~~l~erL~~~EeEnk~LKe~Lakk 351 (902)
+-.-| +|-- -++ +++. +-.+. +.....-+...++.+. .+...+++..-+.++-+|-+.+..+
T Consensus 389 ~i~l~-~~~~-~~n----~~~~---------pe~~~--~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~ 451 (581)
T KOG0995|consen 389 RIKLG-IAEN-SKN----LERN---------PERAA--TNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNK 451 (581)
T ss_pred HHHHH-HHHH-hcc----CCcC---------CccCc--cccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53322 1110 011 1111 11111 0111111111222222 2456788888888899999999999
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHhh
Q 002598 352 TNELQFSRTMYARAASKLSEVESQIEELSK 381 (902)
Q Consensus 352 n~ELq~sr~m~a~taskLs~~e~ql~~ls~ 381 (902)
++-+...+.....+-++|+-++........
T Consensus 452 ~~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 452 ASTIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888888877775544
No 128
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.25 E-value=10 Score=40.24 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=12.4
Q ss_pred hhhHHHhhHhhhHHHHHHHHHHH
Q 002598 208 LDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 208 Les~EKEN~sLKyEl~~lqKELE 230 (902)
...++.+|..|+.++..++++++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356666666666555554443
No 129
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.20 E-value=18 Score=39.20 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=68.8
Q ss_pred ccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHH-------H
Q 002598 791 VEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVAR-------V 863 (902)
Q Consensus 791 ~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e-------~ 863 (902)
++-++..|+.+|...-++.......|.+++.++..|..++.-+++-...++.........+..|..+..... .
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999999999999999999999999999999888888888877777777777766554443 4
Q ss_pred HHHHHHHHhhhhHHHhhhhhhcc
Q 002598 864 DLNEACQKLSSLEVELEDKSNCC 886 (902)
Q Consensus 864 eln~~~~K~ssLE~ELe~~k~~c 886 (902)
++-++..++..|+.+-+.+-.-.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea 105 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEA 105 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555655555444333
No 130
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=81.94 E-value=0.44 Score=57.88 Aligned_cols=21 Identities=38% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHhhHhhhHHH
Q 002598 202 NALMVRLDSTEKENASLKYEV 222 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl 222 (902)
.++..++.-+++||..||..+
T Consensus 455 ~~l~erl~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 455 AELRERLLRLEHENKRLKEKQ 475 (713)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 356778888999999997554
No 131
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.67 E-value=1.7e+02 Score=37.74 Aligned_cols=84 Identities=27% Similarity=0.267 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhh---hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 152 LMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQ---AEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 152 r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~---ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
|+.+-.+.++++++|.++|.|... ++..|++.-.+|.+-... +.-|-.-...|-++++-|.-+||.-+..++-+
T Consensus 271 kSkim~qqa~Lqrel~raR~e~ke---aqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKE---AQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888888888888877544 566666666665554331 21222223456667777777777777777777
Q ss_pred HHHHHHHHHh
Q 002598 229 LEIRNEEREF 238 (902)
Q Consensus 229 LEIR~eERel 238 (902)
|||+..|.+=
T Consensus 348 lEILKaEmee 357 (1243)
T KOG0971|consen 348 LEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 132
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.56 E-value=12 Score=34.69 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=46.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHh
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ 872 (902)
+.||.+++.|+|.|.-|+..+.|....=..|..+.+.++.++..++.+.+..+ .....-+..|+.+..|+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk-------~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK-------EQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 57889999999987777777777777777777777777777776666554432 23333444455555554
No 133
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.38 E-value=1e+02 Score=35.00 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=65.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh------hhh---------------hcH
Q 002598 143 KASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT------QAE---------------ADS 201 (902)
Q Consensus 143 k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks------~ae---------------~e~ 201 (902)
++-+..-+-...|..+...+..+|..+......|.+-|..|+.++.-....-. ... ..+
T Consensus 83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (306)
T PF04849_consen 83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQL 162 (306)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhH
Confidence 33444444455777777778888888888888899999999999877663332 111 235
Q ss_pred HHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 202 NALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
..|+.++..+|-||..||-|...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 889999999999999999999988866
No 134
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.24 E-value=0.48 Score=57.58 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHhHHHHHHH
Q 002598 329 FLTEQLRAMEEENNSLKEVL 348 (902)
Q Consensus 329 ~l~erL~~~EeEnk~LKe~L 348 (902)
.|++++..+.-+.+.|+.++
T Consensus 354 ~L~ek~g~~~~~~~~l~~~~ 373 (722)
T PF05557_consen 354 SLTEKLGSLQSELRELEEEI 373 (722)
T ss_dssp --------------------
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 44555555555544444333
No 135
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.21 E-value=16 Score=32.93 Aligned_cols=70 Identities=26% Similarity=0.326 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 002598 811 SLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELE 880 (902)
Q Consensus 811 ~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe 880 (902)
++...+.|-...|+.|..|-+.|-...--..+.|+....-+.+++..+..+...++.+..++.+|+..|.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556788899999999999999988888888888888777777887777777777777777777766553
No 136
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.03 E-value=82 Score=33.60 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 002598 114 HLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQ 193 (902)
Q Consensus 114 hLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ 193 (902)
.|-..-.+|-+.+..+.+...+...++ ..+.+.+......++.+++.+|..-..+...|..=|+ .+.+.+.-
T Consensus 8 yL~~~~~e~~~~i~~L~~q~~~~~~~i----~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq----~l~~~~~~ 79 (206)
T PF14988_consen 8 YLKKKDEEKEKKIEKLWKQYIQQLEEI----QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQ----ALKEFRRL 79 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHH
Confidence 334444455555555554444433332 3455556666666677776666666666555554444 46666666
Q ss_pred hhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHh-hhhhhHhHHHHHHHHHHHHHHHHH
Q 002598 194 RTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF-NRRTADESHKQHLESVKKIAKLES 262 (902)
Q Consensus 194 ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERel-s~qSaeaA~KQhlEsvKKIaKLEA 262 (902)
+...+.++..|...+..++.++...-.+++.+--. +-.--|+++ ..+.+..+..-|-+.-+|+.-||-
T Consensus 80 k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~-EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~ 148 (206)
T PF14988_consen 80 KEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ-EKARLEKEASELKILQLGERAHKELKKKAQALEL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHH
Confidence 66666777777777777666666655555443222 111123333 333444555555555566555553
No 137
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=49 Score=40.20 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=47.9
Q ss_pred HHHHHhhhhHHHhhHhhhHHHHHHHHHH-HHHH---------HHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 202 NALMVRLDSTEKENASLKYEVRVLGKEL-EIRN---------EEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl~~lqKEL-EIR~---------eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
.+|+.+++.+|-+...+|.|+-..++-| ++|+ +||+=+.=- +.|.| ...-+.||.+||+|...+|.-+
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLq-ESaak-E~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQ-ESAAK-EEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH-HHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999987776653 2222 333333222 33333 4567899999999999999876
No 138
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.81 E-value=1.4e+02 Score=36.32 Aligned_cols=201 Identities=17% Similarity=0.216 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002598 87 AEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRL 166 (902)
Q Consensus 87 AE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L 166 (902)
+..+...+++.+.+...+...++.++.+++..++..-.+++.++++-..--.+...+ ..+++.-...++.++.+..+++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~-r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE-REQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666667777777666666666655444433222222 3455555555666666666666
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhhh------hhhcHHHHHHhhhhHHHhhHhhh---HHHHHHHHHHH-------
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRTQ------AEADSNALMVRLDSTEKENASLK---YEVRVLGKELE------- 230 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks~------ae~e~~~L~~rLes~EKEN~sLK---yEl~~lqKELE------- 230 (902)
.+..+..-.|. |. . +++..+..+... ...-...|..+...+-.-...|. -.+..+...+.
T Consensus 286 ~~l~~~~~p~~--l~-~-~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~ 361 (650)
T TIGR03185 286 RELAADPLPLL--LI-P-NLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPAT 361 (650)
T ss_pred HHHhcccCCHh--hh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhccccc
Confidence 55554432211 11 1 233333333321 11111111111111110000000 00111111110
Q ss_pred ------HHHHHHHhh---hhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcC
Q 002598 231 ------IRNEEREFN---RRTA---DESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGR 293 (902)
Q Consensus 231 ------IR~eERels---~qSa---eaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~ 293 (902)
......++. ..-. ....++=....+++.+||.|...+...++. .|++..+.++..+.+.+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~-~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 362 TDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST-IPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHH
Confidence 001111111 0001 123455567788899999999999888765 5788888888888876554
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.29 E-value=27 Score=41.34 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=58.2
Q ss_pred cccchhhhHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHH
Q 002598 790 NVEAGNKVRQECLVSAID-KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (902)
Q Consensus 790 ~~~s~K~~le~~l~~~~d-~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~ 868 (902)
+++|.++--|..+..-.+ ++++.+.++.+.-+...+|+.++.-+..-+..+|.-+.....=-+.+..++...+ |+|..
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-E~n~~ 407 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-EENKK 407 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 455666666655555555 5666666666655555666656655555555555544433333333444444322 44443
Q ss_pred HHH-----hhhhHHHhhhhhhcchHHHHHHHHHHHhh
Q 002598 869 CQK-----LSSLEVELEDKSNCCEELEATCLELQLQL 900 (902)
Q Consensus 869 ~~K-----~ssLE~ELe~~k~~ceelea~C~ELq~QL 900 (902)
..| .-.|+..-+.++.-+...+..=.+||+||
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22333334445555666666667777776
No 140
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=79.99 E-value=13 Score=32.78 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 826 SQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 826 l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
|++-|++=-..+-.+..+|...+..|-.++.+|.+++..-.++.++|..|+.+++.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677888999999999999999999999999999999999999999875
No 141
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.92 E-value=2e+02 Score=37.44 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHH
Q 002598 178 KALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKI 257 (902)
Q Consensus 178 ~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKI 257 (902)
..++..-....-|..++..++++....-.++..++......+|.++..-.+.--.+.+++=....--..|+-.--.--.|
T Consensus 404 ~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i 483 (1200)
T KOG0964|consen 404 RGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLI 483 (1200)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444455555555555555555555566666666555544455555544444455666666666778
Q ss_pred HHHHHHHHHHHHHHHhcCCCh
Q 002598 258 AKLESECQRLRVLVRKRLPGP 278 (902)
Q Consensus 258 aKLEAECqRLR~lvRK~lPgp 278 (902)
+.|+..+.|=...+|...|+|
T Consensus 484 ~~~~~dl~~~~~~L~~~~~r~ 504 (1200)
T KOG0964|consen 484 ANLEEDLSRAEKNLRATMNRS 504 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 888877777666666666644
No 142
>PRK12704 phosphodiesterase; Provisional
Probab=79.31 E-value=1.2e+02 Score=36.43 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002598 136 RIHDAVMKASMEFEQSLMILEEKLAETSKRLAK 168 (902)
Q Consensus 136 ki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~ 168 (902)
...++..+...++.+.|.+++..+.+..++|..
T Consensus 54 ~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~q 86 (520)
T PRK12704 54 IKKEALLEAKEEIHKLRNEFEKELRERRNELQK 86 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555577777777777776665555443
No 143
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.21 E-value=1.5e+02 Score=35.44 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 246 SHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 246 A~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
..++.-...-|+..-|.|.|+||.-+..
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~~l~~ 380 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRNQLSA 380 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666668899999887755
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.19 E-value=1.1e+02 Score=34.02 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002598 254 VKKIAKLESECQRLRV 269 (902)
Q Consensus 254 vKKIaKLEAECqRLR~ 269 (902)
-..+..+++...+++.
T Consensus 252 ~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 252 QARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 145
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.09 E-value=27 Score=43.59 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHHHh
Q 002598 149 EQSLMILEEKLAETSK---RLAKLGVENTHLTKALLAKEKLIEDLGK 192 (902)
Q Consensus 149 ek~r~eLE~KL~Ea~k---~L~~~~aEn~~L~~al~~k~~~i~eL~e 192 (902)
.++|.|++.-|++.+. .|..+..||..|.-+|.-|+..|..|++
T Consensus 497 ~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 497 TRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 5788899988888877 8999999999999999988888876654
No 146
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.91 E-value=39 Score=33.37 Aligned_cols=91 Identities=25% Similarity=0.278 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH---hHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhh
Q 002598 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE---DLDTQLKVARVDLNEACQKLSSLEVELEDKSN 884 (902)
Q Consensus 808 ~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e---~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~ 884 (902)
-++.+..++.-.|.-+..++.++..+...+.-+...|=....-++ ....+...++.++.++.++..++=.=|-.|..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 345555666666777777777777777777777776666655553 34566777788888888887776666778888
Q ss_pred cchHHHHHHHHHHH
Q 002598 885 CCEELEATCLELQL 898 (902)
Q Consensus 885 ~ceelea~C~ELq~ 898 (902)
-++||.+.-.+|..
T Consensus 97 ~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 97 EVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
No 147
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.58 E-value=76 Score=35.72 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhh
Q 002598 161 ETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNR 240 (902)
Q Consensus 161 Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~ 240 (902)
+...+...+..||..|..+...=++. +.....++..=...+..+|..+.+.||.+..++.++.-...|.+-++
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~-------rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKT-------RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHH-------HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566677777766555432222 22223333333456677777788888888888888888888888777
Q ss_pred hhhHhHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 002598 241 RTADESH--------------------------------KQHLESVKKIAKLESECQRLRVLVRKRLPGP 278 (902)
Q Consensus 241 qSaeaA~--------------------------------KQhlEsvKKIaKLEAECqRLR~lvRK~lPgp 278 (902)
++|-.+. ..+---|..--+||||+.-|.+ |+.|-+
T Consensus 130 ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~---k~~~q~ 196 (307)
T PF10481_consen 130 QAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQA---KKASQA 196 (307)
T ss_pred HhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc---ccCCCc
Confidence 7765332 1222334455689999888873 455444
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.41 E-value=28 Score=39.04 Aligned_cols=51 Identities=33% Similarity=0.439 Sum_probs=36.3
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEER 236 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eER 236 (902)
.+.++.++....+.+-..|...|..+|+|...|..|+..++.+++...++-
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE 94 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE 94 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677888888899999999999888888866655443
No 149
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.95 E-value=30 Score=33.86 Aligned_cols=95 Identities=27% Similarity=0.325 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
..++.-+.+++++|+-++..|...+..+.- |-.++. .|.+.+..++-++.++-.-+..+
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~e--------------L~kqkd-------~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGE--------------LAKQKD-------QLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHH--------------HHHhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888999999998888766655433 222222 23333334433333333333333
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002598 226 GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPG 277 (902)
Q Consensus 226 qKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPg 277 (902)
+..+. |+ .+.++. .|.|||+-+.+++++=..|..|-
T Consensus 64 qaki~-------------ea--~~~le~-eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 64 QAKID-------------EA--RRNLED-EKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHHH-------------HH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------HH--HHHHHH-HHHHHHHHHHHHHHHHhhhhHHH
Confidence 22211 11 234455 78899999999999998886654
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.21 E-value=1.1e+02 Score=32.93 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=46.1
Q ss_pred hHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 002598 68 DLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHD 139 (902)
Q Consensus 68 ~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~e 139 (902)
.|+||+-|=++--|+ .=..|+++||.+|-++..+....+.++..|.+++..+-.+|.....|-.++..+
T Consensus 13 sLLKqQLke~q~E~~---~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 13 SLLKQQLKESQAEVN---QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred HHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 456666665555544 224678888888888888888888888888888777766666554443343333
No 151
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.66 E-value=38 Score=33.12 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHH
Q 002598 817 QESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCL 894 (902)
Q Consensus 817 qEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ 894 (902)
-+.+..+++|...|+..|-|.+.+-.|-+.-......|..+.....-.++++.-+|..+...|+++|-.--+++++..
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888888888888888888888888888888888888776656665544
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=76.63 E-value=19 Score=36.27 Aligned_cols=20 Identities=35% Similarity=0.435 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 002598 255 KKIAKLESECQRLRVLVRKR 274 (902)
Q Consensus 255 KKIaKLEAECqRLR~lvRK~ 274 (902)
..+.+++.+-.+|+.+.|||
T Consensus 145 ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 145 EEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777766653
No 153
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=76.42 E-value=5 Score=45.72 Aligned_cols=96 Identities=16% Similarity=0.285 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH----hhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 806 IDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKM----INEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 806 ~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~----~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
.+..+....++.+....+.+|+.+++.+++...-+-..++.+.. +..+|.++..+++..+..+...+..++..++.
T Consensus 90 ~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 90 KEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 34556666678888888888899998888755444444444432 33456677777777777766666666666666
Q ss_pred hhhcchHHHHHHHHHHHhhc
Q 002598 882 KSNCCEELEATCLELQLQLE 901 (902)
Q Consensus 882 ~k~~ceelea~C~ELq~QLe 901 (902)
....-..+..+|.+|+-...
T Consensus 170 ~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 66556667778888776543
No 154
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.39 E-value=2.4e+02 Score=36.36 Aligned_cols=58 Identities=31% Similarity=0.340 Sum_probs=45.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHH----HHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 002598 78 QEAITGREKAEAEVVSLKQELDA----ALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ 135 (902)
Q Consensus 78 eEAV~GwEKAE~E~~~lKkqLe~----a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEq 135 (902)
..+=.|.+.+-.|+.-++-+|+. +..-...++.++..|++++-+-=++....|+|+||
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eq 390 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQ 390 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45556888899999999988873 44445567788888999998888888888888883
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.19 E-value=22 Score=37.17 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=60.6
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK-RLPGPA 279 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK-~lPgpA 279 (902)
...++.+++.+++++..++.++..++..++.....|.-+ ....+.+.++..|+.++.+|+.-+.+ .--.|.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 345677888888888888888888888888877666655 34455677777777788777776652 123789
Q ss_pred HHhhhhHHHHh
Q 002598 280 ALAKMKNEVEI 290 (902)
Q Consensus 280 ala~Mk~Eve~ 290 (902)
.+.+|+.++..
T Consensus 136 ~i~~~~~~~~~ 146 (188)
T PF03962_consen 136 KIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999999886
No 156
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.89 E-value=2e+02 Score=35.24 Aligned_cols=122 Identities=27% Similarity=0.329 Sum_probs=88.3
Q ss_pred hhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH----h
Q 002598 207 RLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAAL----A 282 (902)
Q Consensus 207 rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAal----a 282 (902)
+|..+..-...--|+|.....+|.--.++-+++-. .+.+.|.=...|+.|.||--|-|..+ .
T Consensus 263 ~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~--------------~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~ 328 (557)
T COG0497 263 KLSELAELLEEALYELEEASEELRAYLDELEFDPN--------------RLEEVEERLFALKSLARKYGVTIEDLLEYLD 328 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44445555555557777777766555555555422 35677888999999999988876655 5
Q ss_pred hhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHH
Q 002598 283 KMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMY 362 (902)
Q Consensus 283 ~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~ 362 (902)
+|+.|...|-.. -+.+..++.+-+.+++-+.+....|-..|-.+
T Consensus 329 ~~~~el~~L~~~------------------------------------~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 329 KIKEELAQLDNS------------------------------------EESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHhhhh------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777764321 25677889999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHh
Q 002598 363 ARAASKLSEVESQIEELS 380 (902)
Q Consensus 363 a~taskLs~~e~ql~~ls 380 (902)
|..-.+ .+..+|+.|.
T Consensus 373 A~~L~~--~v~~eL~~L~ 388 (557)
T COG0497 373 AKELEK--EVTAELKALA 388 (557)
T ss_pred HHHHHH--HHHHHHHhcC
Confidence 997774 5667777653
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=27 Score=42.61 Aligned_cols=85 Identities=25% Similarity=0.294 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchH
Q 002598 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (902)
Q Consensus 809 ~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~cee 888 (902)
+..+..+++..+.-+++|+.+++.++.-..+++.++.....-.+ +... -..++......|..|+.+|++++.--++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~--~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKVR--KDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555433333 1111 1445556666777888888888888888
Q ss_pred HHHHHHHHH
Q 002598 889 LEATCLELQ 897 (902)
Q Consensus 889 lea~C~ELq 897 (902)
|+.+-.+|.
T Consensus 500 L~~~l~~l~ 508 (652)
T COG2433 500 LERKLAELR 508 (652)
T ss_pred HHHHHHHHH
Confidence 877766664
No 158
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=74.85 E-value=2e+02 Score=34.74 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=37.6
Q ss_pred hhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhh
Q 002598 328 NFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSK 381 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~ 381 (902)
..+.++|..++...+.+.+.++.+.......+-.|-.--.+|..++.+..++..
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777666666677666777777766665544
No 159
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.72 E-value=2.8e+02 Score=36.34 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=55.2
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhh--------------hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHH-HHHH
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRT--------------QAEADSNALMVRLDSTEKENASLKYEVRVLGK-ELEI 231 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks--------------~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqK-ELEI 231 (902)
.++.....+|.++|+.+..++..|...+. ........|...+-.+|+||+.|--+++.|.. .+.+
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~ 563 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNG 563 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444445556666666555554444433 12223344556667778888888888888766 2333
Q ss_pred HHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002598 232 RNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKR 274 (902)
Q Consensus 232 R~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~ 274 (902)
-.-|.+++.. --+|-+.-|-|-+|. ..+|=+-.+++.
T Consensus 564 ~~LEq~~n~l-----E~~~~elkk~idaL~-alrrhke~LE~e 600 (1195)
T KOG4643|consen 564 ALLEQNNNDL-----ELIHNELKKYIDALN-ALRRHKEKLEEE 600 (1195)
T ss_pred HHHHHhhhHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333333322 134556666666776 445555555544
No 160
>PRK01156 chromosome segregation protein; Provisional
Probab=74.36 E-value=2.4e+02 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=10.4
Q ss_pred hhHHHHHHHhHHHhHHHHHHH
Q 002598 328 NFLTEQLRAMEEENNSLKEVL 348 (902)
Q Consensus 328 ~~l~erL~~~EeEnk~LKe~L 348 (902)
.-+..++..++.+-+.|++-+
T Consensus 472 ~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 472 NHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 161
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.85 E-value=31 Score=38.79 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=70.4
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQ 265 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECq 265 (902)
.+++|+..+..++..|...|+--..+.-|-.+|.|+|-.|...|+-..+.-.-..+-..--.+.+...=..+..|-.|+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999888766666655444444444445666777777
Q ss_pred HHHHHHHhc
Q 002598 266 RLRVLVRKR 274 (902)
Q Consensus 266 RLR~lvRK~ 274 (902)
-||.-++.+
T Consensus 158 ~Lre~L~~r 166 (302)
T PF09738_consen 158 ELREQLKQR 166 (302)
T ss_pred HHHHHHHHH
Confidence 777666543
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=73.45 E-value=1.4e+02 Score=32.17 Aligned_cols=137 Identities=16% Similarity=0.169 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 96 QELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 96 kqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
+......+.....+.|+.++++.=.+-..+++.+..+-+. ........++.-..++.++++++.+++.+..-...
T Consensus 28 ~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~-----L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 28 QVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIEN-----LEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555555555555555444443 22223444444445555555555555555444444
Q ss_pred hhHHHHHHHHHHHHHHhhhhh-hhhcHHHHHHhhhhHHHhhHhhhHHHH---HHHHHHHHHHHHHHhhhhh
Q 002598 176 LTKALLAKEKLIEDLGKQRTQ-AEADSNALMVRLDSTEKENASLKYEVR---VLGKELEIRNEEREFNRRT 242 (902)
Q Consensus 176 L~~al~~k~~~i~eL~e~ks~-ae~e~~~L~~rLes~EKEN~sLKyEl~---~lqKELEIR~eERels~qS 242 (902)
|...+.. |+..|...... .--....=..|++.+..... ++.+- -....+++-..|.+|++.-
T Consensus 103 l~p~m~~---m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~--~~dv~~~ek~r~vlea~~~E~~yg~~i 168 (251)
T PF11932_consen 103 LVPLMEQ---MIDELEQFVELDLPFLLEERQERLARLRAMLD--DADVSLAEKFRRVLEAYQIEMEYGRTI 168 (251)
T ss_pred HHHHHHH---HHHHHHHHHhcCCCCChHHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHHHHHHHhCCce
Confidence 4444432 55555443320 00000111233333322111 11121 2344577788888887543
No 163
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.23 E-value=2e+02 Score=34.01 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=23.1
Q ss_pred hhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH-HHHHHHHHHhhhhh
Q 002598 192 KQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-LEIRNEEREFNRRT 242 (902)
Q Consensus 192 e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE-LEIR~eERels~qS 242 (902)
++..+++++...|.+.-..++--...||.+++.|.++ -.|-.+++++-+++
T Consensus 158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~ 209 (499)
T COG4372 158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRA 209 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333334455555555544 22455556665555
No 164
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=72.95 E-value=1.1 Score=54.40 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHH----HHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELE----IRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELE----IR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
+..++.++..++-.|..|..-..+++.+|. ++...-.|-++-.+.-.+.|. ..+++.+|+-|+.+|+.-+.
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~-~~~~~~~l~~e~~~L~ek~~ 401 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE-ESRRADKLEFENKQLEEKLE 401 (713)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666642 445555666666666666554 45577888888888776553
No 165
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.25 E-value=71 Score=36.06 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHH----HHHHHHHhhHhHhHHHHHHH
Q 002598 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIED----QVKLQKMINEDLDTQLKVAR 862 (902)
Q Consensus 787 e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~----Ql~~~~~~~e~Ldt~~~~~e 862 (902)
.++.+++.+..|..+++.+..-...++..+ ..|+.++..|+....-+++ .++.-+.--..++.++....
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~-------~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRK-------DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555444444433 3444444444444444332 33333333333444444445
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHH
Q 002598 863 VDLNEACQKLSSLEVELEDKSNCCEELEATCLEL 896 (902)
Q Consensus 863 ~eln~~~~K~ssLE~ELe~~k~~ceelea~C~EL 896 (902)
.++.++..++..|+..+++.+.-+.++...=.++
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444444433333
No 166
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.04 E-value=47 Score=37.26 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=16.0
Q ss_pred HHHHhhhhHHHhhHhhhHHHHHHHHHHHHHH
Q 002598 203 ALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (902)
Q Consensus 203 ~L~~rLes~EKEN~sLKyEl~~lqKELEIR~ 233 (902)
.+...-+..-++...++.++...+++++...
T Consensus 89 ~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 89 ELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555566666666655554443
No 167
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.92 E-value=3.3e+02 Score=35.89 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=68.4
Q ss_pred cchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHH
Q 002598 792 EAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQK 871 (902)
Q Consensus 792 ~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K 871 (902)
...-+.++..+.....+++.++.+-+-.++.|+++ .+|+. +.++..++-..-..+.+ ..+..+-.+++.+.+.
T Consensus 806 ~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~k~~~~~~~~e~~e~~----k~~~~~~~~~tkl~~~ 878 (1141)
T KOG0018|consen 806 QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KNKSKFEKKEDEINEVK----KILRRLVKELTKLDKE 878 (1141)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Confidence 34445566666667777888888888888888888 77777 44666665444443333 4555566778888888
Q ss_pred hhhhHHHhhhhhhcchHHHHHHH
Q 002598 872 LSSLEVELEDKSNCCEELEATCL 894 (902)
Q Consensus 872 ~ssLE~ELe~~k~~ceelea~C~ 894 (902)
+.++|..+|.+.+--.+++-.|.
T Consensus 879 i~~~es~ie~~~~er~~lL~~ck 901 (1141)
T KOG0018|consen 879 ITSIESKIERKESERHNLLSKCK 901 (1141)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhh
Confidence 88888888888888888888874
No 168
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.43 E-value=31 Score=31.02 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=53.6
Q ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 818 ESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 818 EsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
..|..++.|+..|+.+..-.+..+.-++....=+.....++.++-.+.+++..++.+|..||+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888777777778888999999999999999999988764
No 169
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.98 E-value=3.4e+02 Score=35.62 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=71.0
Q ss_pred hchhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHH
Q 002598 40 TDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAAL 119 (902)
Q Consensus 40 ~~~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~AL 119 (902)
.++.+....++.|.++|..+-.+|..-|.-+.|-.---+.+=.-|..-..+...++..+.....+...++.-+.|-..-|
T Consensus 671 k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 671 KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 34455566788999999998888887777676666666677788999999999999999999999988888777766666
Q ss_pred HHHHHHhhhhhhH
Q 002598 120 KECMDQLHFVREE 132 (902)
Q Consensus 120 KeCmrQLr~~rEE 132 (902)
-+..-.|+.++..
T Consensus 751 e~i~~~l~~~~~~ 763 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQ 763 (1200)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555443
No 170
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.92 E-value=20 Score=39.07 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=68.4
Q ss_pred cccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHH
Q 002598 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNE 867 (902)
Q Consensus 788 ~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~ 867 (902)
+..++.--+.+-++|+--..+-+.|...|.+.|.....++-.|..+..-|+.+|.-++..---+.+|.+++.+++-++..
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccc
Confidence 33455555666677777778888899999999999999999999999999999998888776666788888777766655
Q ss_pred HHHH-hhhhHH
Q 002598 868 ACQK-LSSLEV 877 (902)
Q Consensus 868 ~~~K-~ssLE~ 877 (902)
+..- |+-|..
T Consensus 210 ~e~~~i~dl~~ 220 (290)
T COG4026 210 PEEELISDLVK 220 (290)
T ss_pred hHHHHHHHHHH
Confidence 4443 454544
No 171
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.71 E-value=2.9e+02 Score=34.80 Aligned_cols=267 Identities=22% Similarity=0.270 Sum_probs=130.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh------HHHHHHHHHHHH
Q 002598 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASM------EFEQSLMILEEK 158 (902)
Q Consensus 85 EKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~------Ewek~r~eLE~K 158 (902)
-.+-.+..+|.+.|+++.+-.-..+.--.-|+.-|.-++.-+-++.++.+-.|.+..-.+.. ++.-.-..|+.=
T Consensus 285 kes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~l 364 (786)
T PF05483_consen 285 KESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKEL 364 (786)
T ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777888876655444444444455566666666666666666555443322111 122222223333
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHh-------------------------------
Q 002598 159 LAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVR------------------------------- 207 (902)
Q Consensus 159 L~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~r------------------------------- 207 (902)
|.--++++.+....-..|..-|+.|+..+.++.+.+.--+.++..|+.-
T Consensus 365 L~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l 444 (786)
T PF05483_consen 365 LTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL 444 (786)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555666666666666666666665555333333333332
Q ss_pred hhhHHHhhHhhhHHHHHH--------------HHHH---HHHHHHH------------Hhhhhh-------------hHh
Q 002598 208 LDSTEKENASLKYEVRVL--------------GKEL---EIRNEER------------EFNRRT-------------ADE 245 (902)
Q Consensus 208 Les~EKEN~sLKyEl~~l--------------qKEL---EIR~eER------------els~qS-------------aea 245 (902)
|...|++.-.|...|-.. ..+| .+++.|+ .+-..+ ...
T Consensus 445 lq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~ 524 (786)
T PF05483_consen 445 LQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINN 524 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 233333333333222110 0111 1223332 111111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCC-CcccccCCCCCCCCCc
Q 002598 246 SHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPL-GSMVDSAFDNPPDTPS 324 (902)
Q Consensus 246 A~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~-~~~~~s~~d~~~~~~~ 324 (902)
+.+|.....|.|..||.+=++||..+-- -.-.+++-..||+..-..+-+.+|..-.--.. .-. .-.+.+--..-+
T Consensus 525 ~k~qee~~~kqie~Lee~~~~Lrneles---~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq-~k~lenk~~~Lr 600 (786)
T PF05483_consen 525 SKKQEEKMLKQIENLEETNTQLRNELES---VKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQ-MKILENKCNNLR 600 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHH-HHHHHHHHHHHH
Confidence 4566677889999999999999987641 12345677778887443343443321000000 000 000000001122
Q ss_pred chhhhHHHHHHHhHHHhHHHHHHHhhhhhhh
Q 002598 325 KRINFLTEQLRAMEEENNSLKEVLDKKTNEL 355 (902)
Q Consensus 325 k~~~~l~erL~~~EeEnk~LKe~Lakkn~EL 355 (902)
+.++.....+-++..|||+||--+++.+.-+
T Consensus 601 KqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~ 631 (786)
T PF05483_consen 601 KQVENKNKNIEELQQENKALKKKITAESKQS 631 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677778889999987777666544
No 172
>PRK12704 phosphodiesterase; Provisional
Probab=70.27 E-value=2.5e+02 Score=33.90 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=3.7
Q ss_pred hhhHHHHHH
Q 002598 86 KAEAEVVSL 94 (902)
Q Consensus 86 KAE~E~~~l 94 (902)
.|+.++..+
T Consensus 35 ~Ae~eAe~I 43 (520)
T PRK12704 35 EAEEEAKRI 43 (520)
T ss_pred HHHHHHHHH
Confidence 344444433
No 173
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.15 E-value=49 Score=31.17 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
...|..+|+.++++|..|..+|..+.+|
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4578899999999999999999877653
No 174
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.82 E-value=1.3e+02 Score=30.56 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q 002598 96 QELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLM---ILEEKLAETSKRLAKLGVE 172 (902)
Q Consensus 96 kqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~---eLE~KL~Ea~k~L~~~~aE 172 (902)
.+++....++..+.-++..+...|+..-. +.+.+.. -.|+.++. .|..||.|-+.+|.+++.-
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~------------lge~L~~--iDFeqLkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEE------------LGEGLHL--IDFEQLKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555565666555555555443321 1222222 33444432 2445566666666655543
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 173 NTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 173 n~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
... +++ .+.-.++.+..+..+...+...|...+.....++-++.....+
T Consensus 72 ~~~---~v~----~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 72 IGK---TVQ----ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222 2333333334444444444455555555555555444444444
No 175
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=2.8e+02 Score=34.20 Aligned_cols=122 Identities=26% Similarity=0.309 Sum_probs=77.8
Q ss_pred hhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHH
Q 002598 42 KAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121 (902)
Q Consensus 42 ~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKe 121 (902)
.+.+.-.|..|+++|.-+-.++ ++-|-.|.+=-| |-..||+++++....--.+.--+..+-.||-+
T Consensus 10 ve~lr~eierLT~el~q~t~e~-------------~qaAeyGL~lLe-eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEK-------------IQAAEYGLELLE-EKEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999998876554 334445554433 34567777777776666666666666666655
Q ss_pred HHHHhhh-hh---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 002598 122 CMDQLHF-VR---EEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTK 178 (902)
Q Consensus 122 CmrQLr~-~r---EEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~ 178 (902)
.--+-+. ++ +..|-.+++..++ -..+-.--.+||+.|-.+.+.|.+.+.||..|.+
T Consensus 76 ~~s~hkk~~~~g~e~EesLLqESaak-E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 76 YRSQHKKVARDGEEREESLLQESAAK-EEYYLQKILELENELKQLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222 22 2233556666665 4444444468888888888888888888887654
No 176
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.43 E-value=83 Score=34.99 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 002598 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (902)
Q Consensus 794 ~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~ 847 (902)
.+..+...+.....+++.+..++...+..|..++.++..++..-..++.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555555555555444
No 177
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.26 E-value=2.9e+02 Score=34.92 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 002598 254 VKKIAKLESECQRLRVLVRKRL 275 (902)
Q Consensus 254 vKKIaKLEAECqRLR~lvRK~l 275 (902)
-++|..||+|++-++.++...-
T Consensus 418 qeri~~LE~ELr~l~~~A~E~q 439 (717)
T PF09730_consen 418 QERISELEKELRALSKLAGESQ 439 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3489999999999999987743
No 178
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.24 E-value=2.6e+02 Score=33.70 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002598 138 HDAVMKASMEFEQSLMILEEKLAETSKRLAK 168 (902)
Q Consensus 138 ~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~ 168 (902)
..+..+...++...|.+++..+.+..++|..
T Consensus 50 ke~~~EaeeE~~~~R~Ele~el~~~e~rL~q 80 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELERELKERRNELQR 80 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445577777777777766665555433
No 179
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.88 E-value=4e+02 Score=35.68 Aligned_cols=85 Identities=9% Similarity=0.201 Sum_probs=43.4
Q ss_pred HhHhhhHHHHHHHHhhcccchhHHHHhH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHH
Q 002598 47 NDVKNLNDKLFSALAECNAKDDLVKKHA---KMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECM 123 (902)
Q Consensus 47 ~~~k~LneKLs~al~~~~~Kd~lVkqha---KvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCm 123 (902)
.+|..|.+++...++-++.=|.++.+-. -.|+---+-=++|..++..+|++.+++..-....+.-...-.+|++...
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3567777777777777766665553321 2232222222334444444455555444433333333344456666666
Q ss_pred HHhhhhhh
Q 002598 124 DQLHFVRE 131 (902)
Q Consensus 124 rQLr~~rE 131 (902)
+-++.+++
T Consensus 1591 ~~~~~a~~ 1598 (1758)
T KOG0994|consen 1591 RDIRLAQQ 1598 (1758)
T ss_pred HHHHHHHH
Confidence 66665544
No 180
>PRK10869 recombination and repair protein; Provisional
Probab=68.64 E-value=2.7e+02 Score=33.67 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=85.0
Q ss_pred hhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhH
Q 002598 207 RLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKN 286 (902)
Q Consensus 207 rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~ 286 (902)
+++.+-....++.|+|..+..+|.-....-+++ -..+..+|.=...|+.|.||-=|.+..+-..+.
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~d--------------p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~ 327 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLD--------------PNRLAELEQRLSKQISLARKHHVSPEELPQHHQ 327 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334444445555666666666655444333443 233677888899999999999999887755444
Q ss_pred H----HHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHH
Q 002598 287 E----VEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMY 362 (902)
Q Consensus 287 E----ve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~ 362 (902)
+ .+.+. ..-+++..++.+-..++..|.+...+|...|...
T Consensus 328 ~l~~eL~~L~------------------------------------~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 328 QLLEEQQQLD------------------------------------DQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHhh------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44322 2236778888889999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHh
Q 002598 363 ARAASKLSEVESQIEELS 380 (902)
Q Consensus 363 a~taskLs~~e~ql~~ls 380 (902)
|..-.+ .|..+|..|.
T Consensus 372 A~~l~~--~v~~~L~~L~ 387 (553)
T PRK10869 372 AKELAQ--LITESMHELS 387 (553)
T ss_pred HHHHHH--HHHHHHHHcC
Confidence 987764 6777887664
No 181
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=68.40 E-value=2.7e+02 Score=33.43 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhc
Q 002598 252 ESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILG 292 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg 292 (902)
.-..+++.|=.=|.-|+..+...-+|. -.-+..||..|.
T Consensus 402 ~~~~~~~~l~~a~~~l~~~l~~~~~~~--~~p~~~el~~l~ 440 (582)
T PF09731_consen 402 DENRRAQQLWLAVDALKSALDSGNAGS--PRPFEDELRALK 440 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCHHHHHHHHH
Confidence 334455667777888888887754421 112456666543
No 182
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=68.36 E-value=3.2e+02 Score=34.42 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHH-H
Q 002598 155 LEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR-N 233 (902)
Q Consensus 155 LE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR-~ 233 (902)
|..+...+..++..+.+-++.+..-+..=+.-.+-|....+....++..++..++...|....+...++-++-+++-- .
T Consensus 501 L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 501 LREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444333222222223333344445666777778888888888888888888887776543 3
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 234 EEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 234 eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
.+.++.++.++...+---+. +|--+||+||-+||.-+.+
T Consensus 581 ~le~i~~~~~e~~~ele~~~-~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 581 KLEQIQEQYAELELELEIEK-FKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55667777766665543333 4458999999999877654
No 183
>PRK11281 hypothetical protein; Provisional
Probab=68.16 E-value=3.4e+02 Score=35.91 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=30.0
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
...|++++..++-+|..++.|+..-..-.++...-++| ..+++...-..|+.|..-....|
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~-------~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDY-------LTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444444444 34444444455555555554444
No 184
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.14 E-value=3.9e+02 Score=35.24 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=29.6
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKE 838 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~ 838 (902)
-+.++.++.+-.+++..+..|....-..+..|.+.+..+..|+.++...+.-..
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~ 713 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIR 713 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555554433
No 185
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=68.05 E-value=2.8e+02 Score=33.51 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhc
Q 002598 534 QEILELILEQNH 545 (902)
Q Consensus 534 qdvl~~Ileq~~ 545 (902)
..|+..|..+|.
T Consensus 391 ~~V~~aI~~HH~ 402 (514)
T TIGR03319 391 PEVVNAIAAHHG 402 (514)
T ss_pred HHHHHHHHHhCC
Confidence 345555555543
No 186
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.40 E-value=30 Score=42.78 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhc
Q 002598 806 IDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (902)
Q Consensus 806 ~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ 885 (902)
+.++..+..+|+....++..+..+|..++..+.++++++. .|.++......+........+++.+|-.+++..+..
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~ 256 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAE 256 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777888888888888888888888888 555666666666666677777788888888888888
Q ss_pred chHHHHHHHHHHHhhc
Q 002598 886 CEELEATCLELQLQLE 901 (902)
Q Consensus 886 ceelea~C~ELq~QLe 901 (902)
+.++...|..++.-++
T Consensus 257 ~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 257 LKELNDQVSLLTREVQ 272 (670)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877765543
No 187
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.36 E-value=2.3e+02 Score=32.26 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhchhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHH
Q 002598 39 LTDKAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAA 118 (902)
Q Consensus 39 ~~~~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~A 118 (902)
..+...+++.+..|-.+.-+..+....=..+|++ +.-|+++|+++..+...-... ..
T Consensus 106 ~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~------------------I~~L~k~le~~~k~~e~~~~~-----~e 162 (294)
T COG1340 106 GRSIKSLEREIERLEKKQQTSVLTPEEERELVQK------------------IKELRKELEDAKKALEENEKL-----KE 162 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH-----HH
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 002598 119 LKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAE 198 (902)
Q Consensus 119 LKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae 198 (902)
|+.-.+.++.-..+--.+|...+.++. +.=+++.++-.+.++++.+.+-+..-+......+.++++..-.+.
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaq--------e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~ 234 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQ--------EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred hcHHHHHHhhhhHHHhhHhhh
Q 002598 199 ADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 199 ~e~~~L~~rLes~EKEN~sLK 219 (902)
.++.++..++.++.......+
T Consensus 235 ~elre~~k~ik~l~~~~~~~~ 255 (294)
T COG1340 235 NELRELEKKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 188
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.91 E-value=84 Score=31.11 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHH-----------HHHHHHhhhhhhHhHHHHHHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEI-----------RNEEREFNRRTADESHKQHLESV 254 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEI-----------R~eERels~qSaeaA~KQhlEsv 254 (902)
++..|...+-+-+.++..++.++..++++-..|..|+--+.++.+- +.+=.++..|. +++=.=.=|-.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry-~t~LellGEK~ 95 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY-QTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcchH
Confidence 3444444444445555555555555555555555555444444221 11122222222 22222233344
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002598 255 KKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 255 KKIaKLEAECqRLR~lvRK 273 (902)
-.+..|.+.++-+|.|.|.
T Consensus 96 E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887764
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=3.7e+02 Score=34.54 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=79.1
Q ss_pred hHHHHhHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHH---HHHhhhhhhHHHHHHHHHH
Q 002598 68 DLVKKHAKMAQEAITG---REKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC---MDQLHFVREEQEQRIHDAV 141 (902)
Q Consensus 68 ~lVkqhaKvaeEAV~G---wEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeC---mrQLr~~rEEqEqki~eav 141 (902)
.|+|+-.++-.-|++| -|+-+.++...-.+|++. .--+.+-+..||+-+..| ...|..-+|+.+.++++-+
T Consensus 622 kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~---~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~ 698 (970)
T KOG0946|consen 622 KLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDI---QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI 698 (970)
T ss_pred HHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776 333333333332333333 334667777777654444 4555666666667777766
Q ss_pred HHHh---hHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH---HHHhhhhhhhhcHHHHHHhhhhHH
Q 002598 142 MKAS---MEFEQSLMILE---EKLAETSKRLAKLGVENTHLTKALLAKEKLIE---DLGKQRTQAEADSNALMVRLDSTE 212 (902)
Q Consensus 142 ~k~s---~Ewek~r~eLE---~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~---eL~e~ks~ae~e~~~L~~rLes~E 212 (902)
..++ .+++-+|..|. .+..++....+....-|..|..++.+-.+++. .+.+++..-.+.+..+++.-.+.+
T Consensus 699 s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~ 778 (970)
T KOG0946|consen 699 SEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAE 778 (970)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Confidence 5433 45555555555 22223333333344444444444433333332 122233233444444555555444
Q ss_pred HhhHhhhHHHHHHHHHHHHH
Q 002598 213 KENASLKYEVRVLGKELEIR 232 (902)
Q Consensus 213 KEN~sLKyEl~~lqKELEIR 232 (902)
-.+.++-.-+.-+++..|..
T Consensus 779 ~~~~~~~~~~~~qeqv~El~ 798 (970)
T KOG0946|consen 779 LSQGSLNDNLGDQEQVIELL 798 (970)
T ss_pred cccchhhhhhhhHHHHHHHH
Confidence 44444444444444444443
No 190
>PF13514 AAA_27: AAA domain
Probab=66.65 E-value=4e+02 Score=34.83 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhh
Q 002598 341 NNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSK 381 (902)
Q Consensus 341 nk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~ 381 (902)
.+.-.+.+.+...++...+.-+......|..++.++..+-.
T Consensus 796 a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 796 AREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666666666667777778888888876643
No 191
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.64 E-value=3.2e+02 Score=33.73 Aligned_cols=180 Identities=20% Similarity=0.228 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHH-------------
Q 002598 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL------------- 152 (902)
Q Consensus 86 KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r------------- 152 (902)
.-+.+...-.+.|++...+.-.+..++..+++.++.|.-.+.++.++-++.-...... -++..-.+
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l-e~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL-EEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCcHHHH
Confidence 3345566778899999999999999999999999999988888877766544433221 22221110
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHH
Q 002598 153 MILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (902)
Q Consensus 153 ~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR 232 (902)
..|+.-+.....++..+..+=.....-|.+ .++.|+.....-+.+.......+..+..+...+..|++.-.+...-+
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~---e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL 473 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIE---EYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQL 473 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222333333332222222211 23333333333333444444555555555555555554443332222
Q ss_pred HHHHHhhhhhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 233 NEEREFNRRTADESH----KQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 233 ~eERels~qSaeaA~----KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
.. +|-...=++.+ +.=+|.||-|.|=.+|..+.-.=+
T Consensus 474 ~~--e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT 514 (594)
T PF05667_consen 474 VK--ELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDT 514 (594)
T ss_pred HH--HHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22 22222211111 334688888888888877765433
No 192
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.41 E-value=1.4e+02 Score=35.27 Aligned_cols=43 Identities=33% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHh
Q 002598 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (902)
Q Consensus 189 eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERel 238 (902)
.++.++....++...+.+.+...|-+... |++|...+++||--
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~-------Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNR-------LQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34445554555566778888888855444 44555555555543
No 193
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.37 E-value=18 Score=31.98 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002598 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKK 835 (902)
Q Consensus 794 ~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~ 835 (902)
+|..+.+.|..+....-.+..+|++++.....|..++..|++
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888999999999999998888764
No 194
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.73 E-value=1.1e+02 Score=28.84 Aligned_cols=69 Identities=28% Similarity=0.352 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002598 92 VSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQE--QRIHDAVMKASMEFEQSLMILEEKLAETSKRL 166 (902)
Q Consensus 92 ~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqE--qki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L 166 (902)
-.+.+++....++...++....+.+.|+++..- +-++.. ..|-.+... ...+.+...|+.++..+..++
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~----l~~d~~vy~~VG~vfv~--~~~~ea~~~Le~~~e~le~~i 79 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEK----LADDAEVYKLVGNVLVK--QEKEEARTELKERLETIELRI 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcchHHHHhhhHHhh--ccHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666665542 222222 445555554 555666666666666555444
No 195
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=65.68 E-value=1.2e+02 Score=36.08 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 136 RIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 136 ki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
+..+-+.+..+..+.++ ..|.-|.+++++|.+++.|+.+
T Consensus 239 ~akehv~km~kdle~Lq-~aEqsl~dlQk~Lekar~e~rn 277 (575)
T KOG4403|consen 239 KAKEHVNKMMKDLEGLQ-RAEQSLEDLQKRLEKAREEQRN 277 (575)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc
Confidence 33334444455555555 5556666666666666666554
No 196
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.39 E-value=1.7e+02 Score=30.10 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=5.2
Q ss_pred hhhhhhHHHH
Q 002598 83 GREKAEAEVV 92 (902)
Q Consensus 83 GwEKAE~E~~ 92 (902)
|+-...||+.
T Consensus 15 Gft~~QAe~i 24 (177)
T PF07798_consen 15 GFTEEQAEAI 24 (177)
T ss_pred CCCHHHHHHH
Confidence 6655555444
No 197
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=65.31 E-value=2.1 Score=53.59 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhh
Q 002598 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH 127 (902)
Q Consensus 88 E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr 127 (902)
++++..|+..|+++..+...++.....|-+-|.++..|+.
T Consensus 411 ~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~ 450 (859)
T PF01576_consen 411 ETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLD 450 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 4566777777777777777777666666666666655544
No 198
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.09 E-value=50 Score=29.71 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=46.7
Q ss_pred hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 198 e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
++.+..|+.+|+.+.+.+.... -++...+.||+...+++..|+....+.--++..|..|...+|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~-------~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHE-------IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888877666554 445556668998888888888887777777777777765554
No 199
>PRK01156 chromosome segregation protein; Provisional
Probab=64.62 E-value=3.8e+02 Score=33.84 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=10.1
Q ss_pred HHHHhhhhHhhhhhhhhHHHHHHHH
Q 002598 100 AALQQRDTGEERLIHLDAALKECMD 124 (902)
Q Consensus 100 ~a~~q~~~lEdRvshLD~ALKeCmr 124 (902)
.+......++.++..|+.-+++--+
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~ 497 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDE 497 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333
No 200
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=64.48 E-value=3.9e+02 Score=33.98 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=82.8
Q ss_pred hHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 002598 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKL 186 (902)
Q Consensus 107 ~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~ 186 (902)
.+--|+..++.-+.+....+..+.+.+...-.+ -++-+.-+...|.++.-..+++..+-.|++....-....++-
T Consensus 25 ~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~-----~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~ 99 (916)
T KOG0249|consen 25 PLTTRVPELEHSLPEARKDLIKAEEMNTKLQRD-----IREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENE 99 (916)
T ss_pred CCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhh-----hhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHH
Confidence 334466666666666666666666555532111 123334455778888888888888888876644322221111
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhH-hhhHH-HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENA-SLKYE-VRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESEC 264 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~-sLKyE-l~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAEC 264 (902)
+.+=....-+-+.....|+-||+-+|++.. +++.| +-.++-+|.-|+. ++-+|+..|.+-.-.+.||+.+.
T Consensus 100 Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~-------al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 100 LANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNA-------ALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHH-------HHHHHHHhhccHHHHHHHHHHHH
Confidence 111111111222233455666666665542 33322 1223333444442 33456666667777888888888
Q ss_pred HHHHHHHHh
Q 002598 265 QRLRVLVRK 273 (902)
Q Consensus 265 qRLR~lvRK 273 (902)
+|+-+=+.+
T Consensus 173 qe~naeL~r 181 (916)
T KOG0249|consen 173 EELNAELQR 181 (916)
T ss_pred HHHHHHHHH
Confidence 888766544
No 201
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.75 E-value=70 Score=35.70 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=79.0
Q ss_pred ccccccchhhhHHHHHHHhhhhhHHHHHHH----HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHH-----
Q 002598 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQL----QESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQ----- 857 (902)
Q Consensus 787 e~~~~~s~K~~le~~l~~~~d~~e~l~~ql----qEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~----- 857 (902)
.|-+++...++|+.+-|+.+-+.+.+|.++ -+.=+.+.-|+-+|.-++.-+.-+-.-|...---|-+|++-
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati 132 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATI 132 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhh
Confidence 467788889999999999998888888754 44556777788777777776666666666666667777763
Q ss_pred --HHHHHHHHHHHHHHhhhhHHHhhhhhhcchH
Q 002598 858 --LKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (902)
Q Consensus 858 --~~~~e~eln~~~~K~ssLE~ELe~~k~~cee 888 (902)
+..++..||.+..+.-=||.||.++-+--++
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~lles 165 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLES 165 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567889999999999999999988776554
No 202
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.55 E-value=2.9e+02 Score=33.80 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=59.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 002598 121 ECMDQLHFVREEQEQRIHDAVMKASME----FEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQ 196 (902)
Q Consensus 121 eCmrQLr~~rEEqEqki~eav~k~s~E----wek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ 196 (902)
-|+++||-.-. |-..+++-+..|+.| +|.. ..|.+.|+++++++...+-|+.-|-..|++-
T Consensus 202 ~~~KelrdtN~-q~~s~~eel~~kt~el~~q~Ee~-skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~------------- 266 (596)
T KOG4360|consen 202 DCVKELRDTNT-QARSGQEELQSKTKELSRQQEEN-SKLLSQLVDLQKKIKYLRHEKEELDEHLQAY------------- 266 (596)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 56666665432 223343444444433 3332 3678888888888888887776655555431
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEI 231 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEI 231 (902)
-.-...+++.+..+|-.++.+-.++|.-+.||.-
T Consensus 267 -~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 267 -KDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112346677888888888888889988888754
No 203
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.16 E-value=1.3e+02 Score=32.57 Aligned_cols=84 Identities=21% Similarity=0.195 Sum_probs=65.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHH
Q 002598 798 RQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEV 877 (902)
Q Consensus 798 le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ 877 (902)
++++|-++....+.--+++.+.+.-+..+.+.|.++..+...++.....-..--+.|-..|.++++.-..+-.-+-.||.
T Consensus 93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 93 IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 57888888899999999999999999999999999999999998888776666666767777666655555555555555
Q ss_pred Hhhh
Q 002598 878 ELED 881 (902)
Q Consensus 878 ELe~ 881 (902)
+.++
T Consensus 173 e~Dd 176 (205)
T KOG1003|consen 173 ERDD 176 (205)
T ss_pred cHHH
Confidence 4443
No 204
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=61.98 E-value=2.3e+02 Score=36.62 Aligned_cols=72 Identities=28% Similarity=0.313 Sum_probs=51.5
Q ss_pred chhHHHHhH----HHHHHHhhhhhhh-----hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHH
Q 002598 66 KDDLVKKHA----KMAQEAITGREKA-----EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQR 136 (902)
Q Consensus 66 Kd~lVkqha----KvaeEAV~GwEKA-----E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqk 136 (902)
|+..++++. ||+.||-+|.-|| |+|--.+|++|+......... |...|..+++-|.+||=...-
T Consensus 1057 k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-------~~~~kdK~e~er~~rE~n~s~ 1129 (1189)
T KOG1265|consen 1057 KEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV-------DKVIKDKAERERRKRELNSSN 1129 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccccccHHHHHHHHHHHHHHH
Confidence 555555553 7888888887766 556666666666555443322 677889999999999999888
Q ss_pred HHHHHHHH
Q 002598 137 IHDAVMKA 144 (902)
Q Consensus 137 i~eav~k~ 144 (902)
|++.|..+
T Consensus 1130 i~~~V~e~ 1137 (1189)
T KOG1265|consen 1130 IKEFVEER 1137 (1189)
T ss_pred HHHHHHHH
Confidence 88888874
No 205
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.87 E-value=4.2e+02 Score=33.44 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=21.1
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHH
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYE 221 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyE 221 (902)
.+++.+++......+..|+++++.+.+.....++.
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666677777777766555554443
No 206
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.16 E-value=63 Score=31.44 Aligned_cols=66 Identities=30% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE 230 (902)
+..+++|-|..|-+++.+-..--.+|++.+-.-++.+..+..-++++.=-|.-|-.-+..+|.|++
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888876555556666666655555555555555555444444444444444444
No 207
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=61.14 E-value=97 Score=31.56 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=74.8
Q ss_pred cccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHH
Q 002598 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDL 865 (902)
Q Consensus 786 ~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~el 865 (902)
-+|++++-+...+..++..-..++..++....-+-+.++.++..|..+..-...+..+|..-......+...+..++.+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999888888999998888888888888888888888888888888888777777888887777777
Q ss_pred HHHHHHhhhhH
Q 002598 866 NEACQKLSSLE 876 (902)
Q Consensus 866 n~~~~K~ssLE 876 (902)
+.++.....|.
T Consensus 122 ~k~~~~~~~l~ 132 (177)
T PF13870_consen 122 DKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 208
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=60.54 E-value=3.5e+02 Score=32.08 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=87.0
Q ss_pred hhhhhHHHHHHHHHHHHH----------------HHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhH
Q 002598 84 REKAEAEVVSLKQELDAA----------------LQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASME 147 (902)
Q Consensus 84 wEKAE~E~~~lKkqLe~a----------------~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~E 147 (902)
|..+.+.+..+|++|... ..-...++.++...=..|..-+.++...-+.+=+.+..-+.....-
T Consensus 277 ~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~l 356 (473)
T PF14643_consen 277 CQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQL 356 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555441 1223334444444444555666777777777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhH
Q 002598 148 FEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENA 216 (902)
Q Consensus 148 wek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~ 216 (902)
|+..+..|...-.++.++|...+..+.. ..+.++.-+..+.+.+.++..+ +.|...++.+-.-..
T Consensus 357 wd~h~~~l~~~e~~l~~~l~~~r~~~~~---~~q~~E~~Ld~~~d~lRq~s~e-e~L~~~l~~~~~~Ld 421 (473)
T PF14643_consen 357 WDEHRKKLSKQEEELEKRLEQCREKHDQ---ENQEKEAKLDIALDRLRQASSE-EKLKEHLEKALDLLD 421 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999988876 5566666776666777665553 556666665544333
No 209
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=60.01 E-value=3.7e+02 Score=32.23 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=27.3
Q ss_pred hcHHHHHHhhhhHHHhhHhhhHHHHHHHHH----HHHHHHHHHhhhhhhH--hHHHHHHHHHHHH
Q 002598 199 ADSNALMVRLDSTEKENASLKYEVRVLGKE----LEIRNEEREFNRRTAD--ESHKQHLESVKKI 257 (902)
Q Consensus 199 ~e~~~L~~rLes~EKEN~sLKyEl~~lqKE----LEIR~eERels~qSae--aA~KQhlEsvKKI 257 (902)
..+..|..++..+++-.......+..-.+- +-+......+..-.++ .--..++..++++
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 345566666666666554444333222211 3333333333322111 3346667777766
No 210
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.37 E-value=1.6e+02 Score=32.15 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=14.7
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
..+|++.|-.-+..++.|....+..+..+..|
T Consensus 58 I~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee 89 (230)
T PF10146_consen 58 INQDINTLENIIKQAESERNKRQEKIQRLYEE 89 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444
No 211
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.29 E-value=5.9e+02 Score=34.29 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 189 eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
+++++.+.||.-......++..+++-...||.+...... +-.+-.+.|++|..+-++.-++..-|-.--++-.
T Consensus 1602 kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~-------~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~ 1674 (1758)
T KOG0994|consen 1602 KVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA-------EAKQAEKTAGSAKEQALSAEQGLEILQKYYELVD 1674 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555544433332 2233445566666666655555556666666677
Q ss_pred HHHHhcCCChH
Q 002598 269 VLVRKRLPGPA 279 (902)
Q Consensus 269 ~lvRK~lPgpA 279 (902)
.|+-||.-|..
T Consensus 1675 ~l~~~r~~g~~ 1685 (1758)
T KOG0994|consen 1675 RLLEKRMEGSQ 1685 (1758)
T ss_pred HHHHHHhhcch
Confidence 77777665543
No 212
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.25 E-value=1.7e+02 Score=28.63 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=67.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH-----------HHhh-----------------
Q 002598 800 ECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ-----------KMIN----------------- 851 (902)
Q Consensus 800 ~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~-----------~~~~----------------- 851 (902)
..|+......+.++.+++-..+.+..|...+..++.+...++ .++.. ..+|
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~-~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~ 84 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE-ELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence 344455555556666666666666666666666666655554 22210 0011
Q ss_pred -----HhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhh
Q 002598 852 -----EDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (902)
Q Consensus 852 -----e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QL 900 (902)
.+++.....++..++.+...+..|+-.|.....-.+.+...=.+|+.+.
T Consensus 85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2788888888889999999999999999998888888888777777654
No 213
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=58.69 E-value=3.1e+02 Score=30.95 Aligned_cols=66 Identities=29% Similarity=0.295 Sum_probs=44.8
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
.-.++..+..++-.+||||..+|.-.---.+-|---.+||.-.. ++-.-..++|.+||.=|+.|+.
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~-------~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLE-------KELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666777788888888888777766666666666665432 2223345678999999988763
No 214
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=58.01 E-value=2.6e+02 Score=29.88 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 205 MVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 205 ~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
..---++-+||..|+-+|..+-++
T Consensus 155 ~e~~~~i~~EN~~L~k~L~~l~~e 178 (206)
T PF14988_consen 155 DEFTRSIKRENQQLRKELLQLIQE 178 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888888888777775
No 215
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.00 E-value=4.5e+02 Score=32.51 Aligned_cols=109 Identities=24% Similarity=0.277 Sum_probs=55.8
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHH---
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE--- 121 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKe--- 121 (902)
.++..|.|.||.++...+.+.|+.-.+-.- +++.+| ..-..-++.++..||=||..
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlk--------------ehassL-------as~glk~ds~Lk~leIalEqkkE 394 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLK--------------EHASSL-------ASAGLKRDSKLKSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH-------HHHhhhhhhhhhHHHHHHHHHHH
Confidence 466789999999988888777765433211 111111 11111223333444444432
Q ss_pred -HH---HHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 002598 122 -CM---DQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKAL 180 (902)
Q Consensus 122 -Cm---rQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al 180 (902)
|- +||-.+.+ +.-||-+ ..+++..+..||.......+++-++-+|-.-|-..|
T Consensus 395 ec~kme~qLkkAh~----~~ddar~--~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeil 451 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHN----IEDDARM--NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEIL 451 (654)
T ss_pred HHHHHHHHHHHHHH----hhHhhhc--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222211 1122222 577777777777777777776666666655544444
No 216
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.75 E-value=2.7e+02 Score=29.95 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhh
Q 002598 49 VKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHF 128 (902)
Q Consensus 49 ~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~ 128 (902)
+...|-||+.-+.+. ++.++..+.|+-+-.--+.|...||.-+-...-++..|-.+..+|+.-=..-+-++..
T Consensus 34 ~ee~na~L~~e~~~L-------~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 34 AEEGNAQLAEEITDL-------RKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002598 129 VREEQE--QRIHDAVMKASMEFEQSLMILEEKLAETSK-------RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEA 199 (902)
Q Consensus 129 ~rEEqE--qki~eav~k~s~Ewek~r~eLE~KL~Ea~k-------~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~ 199 (902)
+++|.. +.=.+-+.+.+++.-.-...|..+|-+... .+.....--..|..+|.+=..++.+||-++++.+.
T Consensus 107 Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 107 LQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHH
Q 002598 200 DSNALM 205 (902)
Q Consensus 200 e~~~L~ 205 (902)
.+...+
T Consensus 187 ql~q~~ 192 (193)
T PF14662_consen 187 QLSQMQ 192 (193)
T ss_pred HHHhhc
No 217
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.55 E-value=1.8e+02 Score=30.75 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=13.8
Q ss_pred hcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 199 ADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 199 ~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
.++..+++..+.+..++...+++++.
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555543
No 218
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.50 E-value=65 Score=31.01 Aligned_cols=68 Identities=26% Similarity=0.311 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHh-------------------HhHHHHHHHHHHHHHHHH
Q 002598 811 SLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINED-------------------LDTQLKVARVDLNEACQK 871 (902)
Q Consensus 811 ~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~-------------------Ldt~~~~~e~eln~~~~K 871 (902)
.|+-|||=.|+-..-|+.-|.-+.+-|..+..+|...++-|-+ |..+|.-++.++|++-.|
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~k 84 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGK 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhH
Confidence 3445555555555555555555555555555555555544433 555677778888888888
Q ss_pred hhhhHHH
Q 002598 872 LSSLEVE 878 (902)
Q Consensus 872 ~ssLE~E 878 (902)
+-.|++|
T Consensus 85 v~eLq~E 91 (96)
T PF11365_consen 85 VMELQYE 91 (96)
T ss_pred HHHHhhc
Confidence 8777665
No 219
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.35 E-value=5.8e+02 Score=33.62 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 002598 843 QVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELE 880 (902)
Q Consensus 843 Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe 880 (902)
+..++..++++.-+++++.+.+|-++..+++.+=..|+
T Consensus 850 ~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le 887 (1072)
T KOG0979|consen 850 RALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLE 887 (1072)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 34455566677777777777777666666665555554
No 220
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.21 E-value=5.2e+02 Score=33.02 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 244 DESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 244 eaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
+.+..+-.+..+..+.++++|..++....+
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 435 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEEEIKK 435 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666677777777776666544
No 221
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.63 E-value=99 Score=28.56 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK 837 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~ 837 (902)
++||++++-|+|.|.-|.....|.-..-.+|..+-..++...
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 567888888888555554444444444444444444444333
No 222
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.42 E-value=1.3e+02 Score=32.05 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.5
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhh
Q 002598 104 QRDTGEERLIHLDAALKECMDQLH 127 (902)
Q Consensus 104 q~~~lEdRvshLD~ALKeCmrQLr 127 (902)
-+..+|.||..||..+-+.+.-|+
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889999999999999988777
No 223
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.34 E-value=5.5e+02 Score=33.09 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=8.4
Q ss_pred cchhhHHHHHHHHHHh
Q 002598 665 KTSELSDILQQFVHAC 680 (902)
Q Consensus 665 k~seL~~~Le~fvh~C 680 (902)
|++|+-.|+-.|+.+-
T Consensus 977 kkpeiAqVia~yvAs~ 992 (1118)
T KOG1029|consen 977 KKPEIAQVIADYVASG 992 (1118)
T ss_pred CCchhhhhhhhhhccC
Confidence 4455555555555443
No 224
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.99 E-value=2.1e+02 Score=34.84 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 149 EQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 149 ek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
+.++.-.+.+|.++-.+++.+.+.+.+ ...+-.+|..||+..|++..++..||......
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~---------------------f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~ 470 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVH---------------------FYAECRALQKRLESAEKEKESLEEELKEANQN 470 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777788877766655543322 22334456666766666666666666555555
Q ss_pred HHHHHHH-----HHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 229 LEIRNEE-----REFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 229 LEIR~eE-----Rels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
+....+| |.|-.|- .+-++|=..+-.++++-..|.+-||
T Consensus 471 i~~LqDEL~TTr~NYE~QL-s~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 471 ISRLQDELETTRRNYEEQL-SMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444 4455554 5677777788899999999999998
No 225
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.98 E-value=1.7e+02 Score=33.77 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=74.4
Q ss_pred cccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH----------------H-hhHHHHHHHHHHHHh
Q 002598 788 FINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILK----------------K-SKEVIEDQVKLQKMI 850 (902)
Q Consensus 788 ~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk----------------~-s~~~~E~Ql~~~~~~ 850 (902)
+..++..|..||..|....+++..+...+...++.|..-..-|.-++ . ..-.+-..++.-..+
T Consensus 253 i~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~ 332 (384)
T PF03148_consen 253 IHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRES 332 (384)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHH
Confidence 55667777777777766666444444444444444333322221111 0 011122235556667
Q ss_pred hHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhh
Q 002598 851 NEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQL 900 (902)
Q Consensus 851 ~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QL 900 (902)
...|..++..+++.++.+..-...||.++..|.++..=....|..+-..+
T Consensus 333 i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~~ 382 (384)
T PF03148_consen 333 IEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRRY 382 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 77899999999999999999999999999999999988888998876543
No 226
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.75 E-value=5.8e+02 Score=32.80 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 002598 116 DAALKECMDQLHFVREEQEQRIHDAVMKA-SMEFEQSLM-ILEEKLAETSKRLAKLGVE 172 (902)
Q Consensus 116 D~ALKeCmrQLr~~rEEqEqki~eav~k~-s~Ewek~r~-eLE~KL~Ea~k~L~~~~aE 172 (902)
+-+.-.-|+|-+-.++-|||- +|..++ .-+|.++-. .+..+|++++++|+++..=
T Consensus 633 ~~~~~~i~~~q~e~~klqeq~--~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t 689 (1104)
T COG4913 633 DFYMIKIMRQQGEYIKLQEQA--NALAHIQALNFASIDLPSAQRQIAELQARLERLTHT 689 (1104)
T ss_pred HHHhhHHHHHHHHHHHHHHHH--HHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 344556677777777666652 222221 235555532 3557889998888877643
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.62 E-value=1.2e+02 Score=32.90 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHhhcC
Q 002598 840 IEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQLER 902 (902)
Q Consensus 840 ~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~QLe~ 902 (902)
++....+.+.=-.-|.+++.....+|+.+..+..+|....++...----|....-.||.|+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 344444444444456677777788899999999999999999988888889999999999874
No 228
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.52 E-value=3.3e+02 Score=30.00 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhh-hhHhhhhhhhhHHHHHHHHH
Q 002598 74 AKMAQEAITGREKAEAEVVSLKQELDAALQQR-DTGEERLIHLDAALKECMDQ 125 (902)
Q Consensus 74 aKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~-~~lEdRvshLD~ALKeCmrQ 125 (902)
..+||-+|..+..+...+..+...|..+.++. ...+.++.++...|..-.++
T Consensus 135 taaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 135 TAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 36799999999999999999988887775544 34446666666666665544
No 229
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.20 E-value=80 Score=29.14 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
|.+|++.......+...++...+.+++||..||.|-+.-|.-
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555667778888888888888886655543
No 230
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=54.17 E-value=4e+02 Score=35.04 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=38.0
Q ss_pred hHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 002598 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKL 186 (902)
Q Consensus 107 ~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~ 186 (902)
+..+++..|+.-|-.|.+||+.+++-.- - ........-+-+-.|+.+|.....+|.....|...+-..|.+++.+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~-~----~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~i 519 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYM-N----QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEI 519 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666655331 0 1111222222233344444445555566666666666665555555
Q ss_pred HHH
Q 002598 187 IED 189 (902)
Q Consensus 187 i~e 189 (902)
|..
T Consensus 520 i~~ 522 (1041)
T KOG0243|consen 520 ISQ 522 (1041)
T ss_pred HHH
Confidence 543
No 231
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=53.76 E-value=3.8e+02 Score=30.36 Aligned_cols=146 Identities=20% Similarity=0.170 Sum_probs=103.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH--hhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---------------
Q 002598 83 GREKAEAEVVSLKQELDAALQ--QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKAS--------------- 145 (902)
Q Consensus 83 GwEKAE~E~~~lKkqLe~a~~--q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s--------------- 145 (902)
-.-+-|.|...++-++..+.+ +=.+++-|-.-||-|+..-.-.|...-++-..||.++-.+++
T Consensus 137 rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LM 216 (330)
T KOG2991|consen 137 RLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLM 216 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHH
Confidence 444567777777777777644 456788888889999888887777777777777777655543
Q ss_pred -------hHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHh
Q 002598 146 -------MEFEQS-LMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENAS 217 (902)
Q Consensus 146 -------~Ewek~-r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~s 217 (902)
+|-+.+ +.--+.+|+++.-+|+--+.-+.-|..+-.+=..-+.+|.+......+-+--|+..|..++|++..
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~ 296 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQR 296 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 111111 112246777777777766666667777666666778888888887777777899999999999888
Q ss_pred hhHHHHHHHHH
Q 002598 218 LKYEVRVLGKE 228 (902)
Q Consensus 218 LKyEl~~lqKE 228 (902)
|+.++..+.+-
T Consensus 297 l~k~~~q~sqa 307 (330)
T KOG2991|consen 297 LKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHH
Confidence 88887766653
No 232
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=53.57 E-value=2e+02 Score=29.18 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchH
Q 002598 854 LDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (902)
Q Consensus 854 Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~cee 888 (902)
-++++.+|+.-|....+||..||+-..-.-..|.+
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~ 136 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34567889999999999999999999888888765
No 233
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.11 E-value=1.6e+02 Score=36.47 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002598 252 ESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~lv 271 (902)
|.-++|..|+.+..+||.|=
T Consensus 492 e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 492 EKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44467777888877777663
No 234
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.89 E-value=5.2e+02 Score=31.70 Aligned_cols=207 Identities=18% Similarity=0.225 Sum_probs=95.0
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhh---hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHH
Q 002598 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKA---EAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (902)
Q Consensus 46 ~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKA---E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeC 122 (902)
+..+-.|.+||...+.-+...-.+.-|-+-...+++- ||. |.-+..+.++|-+.-.+..++.-|+.|=+.+|--.
T Consensus 307 ~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~Lq--Eksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~r 384 (531)
T PF15450_consen 307 ESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQ--EKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLR 384 (531)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4445555555555555544443333333333333333 221 22234444555555555555555655555555555
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHH
Q 002598 123 MDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSN 202 (902)
Q Consensus 123 mrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~ 202 (902)
+.+++. |.+..+....-++ -.| +.+++..+.+....++.+-.+-..|+. |--++ ++..+..|.
T Consensus 385 L~e~~~---e~~~~~r~~lekl-~~~---q~e~~~~l~~v~eKVd~LpqqI~~vs~----Kc~~~------Ksd~d~kId 447 (531)
T PF15450_consen 385 LSEAKN---EWESDERKSLEKL-DQW---QNEMEKHLKEVQEKVDSLPQQIEEVSD----KCDLH------KSDSDTKID 447 (531)
T ss_pred HHHHHH---HHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHH------Hhhhhhhcc
Confidence 544433 2222222222221 112 224444444444444433332222211 11111 111111111
Q ss_pred HHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 002598 203 ALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGP 278 (902)
Q Consensus 203 ~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgp 278 (902)
+.....+.+...+|.||-.+-.-+.+..+.- =.++-|+. +-.+- ...|-|||.=+|-=++..-+|+-.-
T Consensus 448 ---tE~k~R~~eV~~vRqELa~lLssvQ~~~e~~-~~rkiaei--qg~l~-~~qi~kle~siq~nKtiqn~kfntE 516 (531)
T PF15450_consen 448 ---TEGKAREREVGAVRQELATLLSSVQLLKEDN-PGRKIAEI--QGKLA-TNQIMKLENSIQTNKTIQNLKFNTE 516 (531)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhhHHHH--HHHHH-HHHHHHHHHHHHHHHHHHhcccchH
Confidence 2233456677788888877655555544321 11222222 22333 6778899999999999988888544
No 235
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.87 E-value=5.5e+02 Score=32.06 Aligned_cols=203 Identities=15% Similarity=0.196 Sum_probs=99.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHH-----HHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002598 83 GREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALK-----ECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEE 157 (902)
Q Consensus 83 GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALK-----eCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~ 157 (902)
-.+-|+-++..|+...+-+..-+--|-.|+..||.|-+ +..+-+.-.++--+. +..-++-.--+-.++++
T Consensus 333 Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~-----~~~~~r~i~~~~~~~~~ 407 (852)
T KOG4787|consen 333 QLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEM-----EKDMSKMIVTISELERK 407 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHh-----HhHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999997644 333222222221110 11101111111112333
Q ss_pred HHHHHHH--HHHHhh-------hhhhhhhHHHHHHHHHHHHHHhhhh--hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHH
Q 002598 158 KLAETSK--RLAKLG-------VENTHLTKALLAKEKLIEDLGKQRT--QAEADSNALMVRLDSTEKENASLKYEVRVLG 226 (902)
Q Consensus 158 KL~Ea~k--~L~~~~-------aEn~~L~~al~~k~~~i~eL~e~ks--~ae~e~~~L~~rLes~EKEN~sLKyEl~~lq 226 (902)
++.+... +|+... .+|..-.+-|..-..-..|+++-.. .+- ....|+..|+..-|.+.-|.|-|.-..
T Consensus 408 ~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~-~~~sL~~~LeqAsK~CRIL~~RL~K~~ 486 (852)
T KOG4787|consen 408 NLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQ-KVISLATKLEQANKQCRILNERLNKLH 486 (852)
T ss_pred cccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchhHHHHHHHhHHH
Confidence 3333222 222111 1111100000000000111111111 111 123467788888888888888776554
Q ss_pred HH--------------HHHHHHHHHhhhhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHH
Q 002598 227 KE--------------LEIRNEEREFNRRTADESHKQHL---ESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVE 289 (902)
Q Consensus 227 KE--------------LEIR~eERels~qSaeaA~KQhl---EsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve 289 (902)
.+ +.++-+|.-+|. +.+.+-|. +..++++++|.+|--|+.-. - +-++.--++=
T Consensus 487 R~q~R~~~~~~~d~~kIK~LE~e~R~S~---~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~----~---~t~~l~Kq~L 556 (852)
T KOG4787|consen 487 RKQVRDGEIQYSDELKIKILELEKRLSE---KLAIDLVSELEGKIPTIDEIEQCCEVLAAVE----T---QTGRLCKQFL 556 (852)
T ss_pred HHHHhhhhhccchHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCcHhHHHHHHHHHHHHh----h---hHHHHHHHHH
Confidence 33 334445555554 44455554 45688899999998876543 2 2233334444
Q ss_pred hhcCCChhhhhc
Q 002598 290 ILGRESPETRRK 301 (902)
Q Consensus 290 ~lg~d~~e~rrr 301 (902)
..|....+++|+
T Consensus 557 ~~~~~q~de~r~ 568 (852)
T KOG4787|consen 557 KIDHAQKDERRR 568 (852)
T ss_pred HhcccCcchHHH
Confidence 445444444443
No 236
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.72 E-value=1.1e+02 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~ 840 (902)
+.||.+++.|.|.+..|+....+....-.+|..+-..|+.-|.-+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 568889999999888888877777776666665555555544433
No 237
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=52.27 E-value=6.1e+02 Score=32.40 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=16.4
Q ss_pred hHhhhHHHHHHHHhhcccchhHHHHhH
Q 002598 48 DVKNLNDKLFSALAECNAKDDLVKKHA 74 (902)
Q Consensus 48 ~~k~LneKLs~al~~~~~Kd~lVkqha 74 (902)
.+..+|+||..+|++ ||.-|-|.-
T Consensus 88 ~~~d~ndklE~~Lan---kda~lrq~e 111 (916)
T KOG0249|consen 88 SIHDLNDKLENELAN---KDADLRQNE 111 (916)
T ss_pred CcccchHHHHHHHhC---cchhhchhH
Confidence 467788888887765 566665543
No 238
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=51.94 E-value=5.8e+02 Score=32.04 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=21.9
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
....+..|+..+..+.++...|++++..+.++
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~ 270 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTRE 270 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346677777777777777777777766666
No 239
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.91 E-value=4.2e+02 Score=30.35 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=13.8
Q ss_pred hhhHhhhhhhhhHHHHHHHHHhhhhhhH
Q 002598 105 RDTGEERLIHLDAALKECMDQLHFVREE 132 (902)
Q Consensus 105 ~~~lEdRvshLD~ALKeCmrQLr~~rEE 132 (902)
..-+++|+..+..-|.+...+|...|++
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555443
No 240
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.18 E-value=80 Score=28.46 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTE 212 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~E 212 (902)
.||.||..+=....+++.||..|..-+..=..-=..|.+....|-+.+..+-.||-++|
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 68888888888888889999876654433222222333444455556666666776665
No 241
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.53 E-value=1.1e+02 Score=36.28 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhHHH
Q 002598 90 EVVSLKQELDAALQQRDTGEERLIHLDAAL 119 (902)
Q Consensus 90 E~~~lKkqLe~a~~q~~~lEdRvshLD~AL 119 (902)
++..++++|+.+..+...+++++..++..+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444433
No 242
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.51 E-value=75 Score=35.92 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=42.5
Q ss_pred cHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCC
Q 002598 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV--RKRLPG 277 (902)
Q Consensus 200 e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv--RK~lPg 277 (902)
.+..+...+..++.+.+.++..+-.+|+ +|++.=++...-+- -...-|.|||.|..+++.+| |+.+++
T Consensus 130 ~~~~~~~~~~~l~~~va~v~q~~~~qq~---------Els~~L~~l~~~~~-~~s~~~~k~esei~~Ik~lvln~~~f~~ 199 (300)
T KOG2629|consen 130 QFDKAAKSLNALMDEVAQVSQLLATQQS---------ELSRALASLKNTLV-QLSRNIEKLESEINTIKQLVLNMSNFAP 199 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHhcccccCC
Confidence 3344445555555555555555544444 55555555555444 34577999999999999887 555665
Q ss_pred hH
Q 002598 278 PA 279 (902)
Q Consensus 278 pA 279 (902)
|.
T Consensus 200 p~ 201 (300)
T KOG2629|consen 200 PV 201 (300)
T ss_pred CC
Confidence 54
No 243
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.50 E-value=54 Score=36.48 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=49.6
Q ss_pred cccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q 002598 786 SEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKM 849 (902)
Q Consensus 786 ~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~ 849 (902)
.++-++..++.+++.+|.+-.+.++.+.++.++....|..++.++..++.-=.-++..|.....
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999988888888888888777776655444544444433
No 244
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=50.40 E-value=3.1e+02 Score=29.55 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH-HHHHHHH---H
Q 002598 161 ETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-LEIRNEE---R 236 (902)
Q Consensus 161 Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE-LEIR~eE---R 236 (902)
++-.+|.++.+|+-. ++..+.+++.++...+...-.+|..|+.--+-++.+|..|+-....|--+ ...|.-- -
T Consensus 20 el~~rLR~~E~ek~~---~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQ 96 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMS---LMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQ 96 (195)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHH
Confidence 334456666666533 67788999999999999888888888888888888888888777666543 3333323 2
Q ss_pred HhhhhhhHhHHHHHHHHHHHHHHHHH
Q 002598 237 EFNRRTADESHKQHLESVKKIAKLES 262 (902)
Q Consensus 237 els~qSaeaA~KQhlEsvKKIaKLEA 262 (902)
-|.+-+|.+-++.=.--.+|++.||.
T Consensus 97 rFGryta~vmr~eV~~Y~~KL~eLE~ 122 (195)
T PF10226_consen 97 RFGRYTASVMRQEVAQYQQKLKELED 122 (195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888777777788888875
No 245
>PF14992 TMCO5: TMCO5 family
Probab=49.67 E-value=4.3e+02 Score=29.99 Aligned_cols=63 Identities=25% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhh-----------hhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 157 EKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRT-----------QAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 157 ~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks-----------~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
.-|-+++.+-+++.-+|.++++.+++ |+.... ++..-....+.+++.+..+++.+.-++-.+
T Consensus 63 ~~l~~le~e~~~LE~~ne~l~~~~~e-------lq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kv 135 (280)
T PF14992_consen 63 TDLQELELETAKLEKENEHLSKSVQE-------LQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKV 135 (280)
T ss_pred HHHHHHHhhhHHHhhhhHhhhhhhhh-------hhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33434444445666677777765553 333322 333333444455565665555555555544
Q ss_pred H
Q 002598 226 G 226 (902)
Q Consensus 226 q 226 (902)
.
T Consensus 136 e 136 (280)
T PF14992_consen 136 E 136 (280)
T ss_pred H
Confidence 3
No 246
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.62 E-value=1.3e+02 Score=37.64 Aligned_cols=82 Identities=26% Similarity=0.255 Sum_probs=55.8
Q ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-HhhhhHHHHh
Q 002598 212 EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAA-LAKMKNEVEI 290 (902)
Q Consensus 212 EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAa-la~Mk~Eve~ 290 (902)
++-...|+.+...|-++|.-..++++-=+..|+...+++-+...+=+.|..=|+++..++..++|.... =-.|+.|++.
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 334444555555566666666666666666677777777777778888888889888888888886543 3457777776
Q ss_pred hcC
Q 002598 291 LGR 293 (902)
Q Consensus 291 lg~ 293 (902)
+..
T Consensus 644 ~~~ 646 (717)
T PF10168_consen 644 MKD 646 (717)
T ss_pred HHH
Confidence 543
No 247
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.43 E-value=4.3e+02 Score=29.74 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=78.0
Q ss_pred hhhhhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHH
Q 002598 42 KAELENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKE 121 (902)
Q Consensus 42 ~~~l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKe 121 (902)
..+++..|.+|..++......+.. ...++..++..+..+..+...+++++.....-|++
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~---------------------~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDE---------------------LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555555533 34556667777777777777888888888888877
Q ss_pred HHHHhhhhhhHHH---------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhh
Q 002598 122 CMDQLHFVREEQE---------------------QRIHDAVMKASMEFEQSLMILEEKLAETSK---RLAKLGVENTHLT 177 (902)
Q Consensus 122 CmrQLr~~rEEqE---------------------qki~eav~k~s~Ewek~r~eLE~KL~Ea~k---~L~~~~aEn~~L~ 177 (902)
=+|=+-.--.-.- -.|.++...+-..+..-+..||.+=..+.+ .|..+-.|+.
T Consensus 106 raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e--- 182 (265)
T COG3883 106 RARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELE--- 182 (265)
T ss_pred HHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 6553321111110 222233333333333333344433322222 3333333333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh
Q 002598 178 KALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 178 ~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK 219 (902)
.+...|..+++.-..-+..+.++...+..|-++|.
T Consensus 183 -------~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 183 -------TQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35566666666666666666666666666666665
No 248
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.04 E-value=2.8e+02 Score=27.50 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 002598 258 AKLESECQRLRVL 270 (902)
Q Consensus 258 aKLEAECqRLR~l 270 (902)
-|-|-|..+|+.-
T Consensus 136 rkke~E~~kLk~r 148 (151)
T PF11559_consen 136 RKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 249
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=48.67 E-value=3.6e+02 Score=28.70 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002598 254 VKKIAKLESECQRLRVLV 271 (902)
Q Consensus 254 vKKIaKLEAECqRLR~lv 271 (902)
..|..+||.||-||.++=
T Consensus 119 lekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 119 LEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999999998763
No 250
>PLN02939 transferase, transferring glycosyl groups
Probab=48.66 E-value=7.7e+02 Score=32.48 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=65.3
Q ss_pred HHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhh
Q 002598 98 LDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE-------TSKRLAKLG 170 (902)
Q Consensus 98 Le~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~E-------a~k~L~~~~ 170 (902)
|+.....+.+|+.+|.-|+--|-|...++..+-+ .+++.-+.+ .+.+++|.+|=...+. +..+|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDARIKLAAQ---EKIHVEILE--EQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh---ccccchhhH--HHHHHHhhhhhccccccccccccHHHHHHHHH
Confidence 3344444444455554444444444444433333 334444443 5677777777665555 677889999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 171 VENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 171 aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
.||-.|...++. |+..+. ++.+...++--+|||.+.|..-|+.++.-+
T Consensus 233 ~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 233 EENMLLKDDIQF-------LKAELI----EVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred HHhHHHHHHHHH-------HHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887765553 222222 112233566677788777777776665543
No 251
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.40 E-value=1.2e+02 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002598 145 SMEFEQSLMILEEKLAETSKRLAKLGVENT 174 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~ 174 (902)
..+||..| |+.+|+++..+|.++..+..
T Consensus 93 ~~dwEevr--LkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 93 GTDWEEVR--LKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred CCchHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46788765 56666666666665554443
No 252
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.25 E-value=2.5e+02 Score=30.62 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHH
Q 002598 817 QESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEEL 889 (902)
Q Consensus 817 qEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceel 889 (902)
..-++.|.+++.+.+.|..=+....++|+.-..=+..||.-...++.+-+....++..|.-|+.-=++.=.++
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555544444444555555555555555555555555544444433333
No 253
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.00 E-value=2.1e+02 Score=31.62 Aligned_cols=70 Identities=31% Similarity=0.351 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH---HH
Q 002598 154 ILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE---LE 230 (902)
Q Consensus 154 eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE---LE 230 (902)
+|-..+.+...+|+..-+|++.|- ++....+++.+.++.||..+++||+-|-..+.-+.-+ |+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~--------------~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELL--------------KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 333444444445555555655432 3334456677788889999999999888888777633 44
Q ss_pred HHHHHHH
Q 002598 231 IRNEERE 237 (902)
Q Consensus 231 IR~eERe 237 (902)
-|-.|.+
T Consensus 198 ~r~~ELe 204 (290)
T COG4026 198 KRWDELE 204 (290)
T ss_pred HHHHHhc
Confidence 4444443
No 254
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=47.63 E-value=7.6e+02 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=12.4
Q ss_pred chhhhhhhhchhhhhcc
Q 002598 415 AESRASALISESEHLRS 431 (902)
Q Consensus 415 seSWAsALisEld~fk~ 431 (902)
-+-.||-||++++.|-+
T Consensus 1130 kDmcaselfneheeeS~ 1146 (1424)
T KOG4572|consen 1130 KDMCASELFNEHEEESG 1146 (1424)
T ss_pred hhHHHHHHHHHhhhhcc
Confidence 34567889999988743
No 255
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.65 E-value=1.5e+02 Score=36.00 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=69.1
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~e 864 (902)
...+.++=..+-.++.+...-..+-+.|..+|..+|+....+..+|..++....++++.+......|+ .|+..+-.-
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSEH 495 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHH
Confidence 55666677777777777777777788888888888888888888888888888888888888887777 666666666
Q ss_pred HHHHHHHhhhhHHHhh
Q 002598 865 LNEACQKLSSLEVELE 880 (902)
Q Consensus 865 ln~~~~K~ssLE~ELe 880 (902)
|-.+..++..-..|++
T Consensus 496 LasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666655555544
No 256
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.51 E-value=5.4e+02 Score=30.07 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002598 252 ESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~lv 271 (902)
+....+..++++...++.-+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l 307 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKI 307 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544443
No 257
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.94 E-value=1.2e+02 Score=37.52 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=75.1
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVD 864 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~e 864 (902)
-+.+.-++-.|+-|.-..+-.|+..+.-..+..+.|--|..-+..|.+. |.+|+.+-.+.-+||||.-++=++
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnat-------EEmLQqellsrtsLETqKlDLmae 182 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNAT-------EEMLQQELLSRTSLETQKLDLMAE 182 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchH-------HHHHHHHHHhhhhHHHHHhHHHHH
Confidence 3456667777777777777788877777778888888888777777764 677888888889999999999999
Q ss_pred HHHHHHHhhhhHHHh---hhhhhcchHH
Q 002598 865 LNEACQKLSSLEVEL---EDKSNCCEEL 889 (902)
Q Consensus 865 ln~~~~K~ssLE~EL---e~~k~~ceel 889 (902)
|-++.-|.-+||.|- |+|-.--|++
T Consensus 183 vSeLKLkltalEkeq~e~E~K~R~se~l 210 (861)
T KOG1899|consen 183 VSELKLKLTALEKEQNETEKKLRLSENL 210 (861)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 999999999999543 4444334433
No 258
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.89 E-value=3.8e+02 Score=28.07 Aligned_cols=179 Identities=15% Similarity=0.221 Sum_probs=92.7
Q ss_pred hHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhh
Q 002598 52 LNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE 131 (902)
Q Consensus 52 LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rE 131 (902)
+.-.+..++..+-.-..++.|+..=+++++.-+.++=+.+.+.+++|+- +...++..+..++.-.+.+++ -
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~---~~~~~~~~~~~~~~~A~~Al~------~ 80 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLER---KLDEAEEEAEKWEKQAELALA------A 80 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH------c
Confidence 4455666666666677888999988888888888887777776665543 333344444444444444432 1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhH
Q 002598 132 EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDST 211 (902)
Q Consensus 132 EqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~ 211 (902)
.++.....++.. .. .++.++..++..++.....-..|. .. +..|..++..+
T Consensus 81 g~edLAr~al~~-k~-------~~e~~~~~l~~~~~~~~~~~~~l~--------------~~-------l~~l~~kl~e~ 131 (221)
T PF04012_consen 81 GREDLAREALQR-KA-------DLEEQAERLEQQLDQAEAQVEKLK--------------EQ-------LEELEAKLEEL 131 (221)
T ss_pred CCHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHH--------------HH-------HHHHHHHHHHH
Confidence 244555556665 23 444444444444433333222211 11 12233333333
Q ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 212 EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 212 EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
..+-..|+.-..+.+-...+..-...++ .+.+..-.-+.-.+|..+|+...-...+.
T Consensus 132 k~k~~~l~ar~~~a~a~~~~~~~~~~~~---~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 132 KSKREELKARENAAKAQKKVNEALASFS---VSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333332222223333333333 35555566667777777777776665554
No 259
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.47 E-value=2.2e+02 Score=30.65 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=11.0
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q 002598 820 QKIVSNSQNELDILKKSKEVIEDQVKLQ 847 (902)
Q Consensus 820 E~~i~~l~seL~slk~s~~~~E~Ql~~~ 847 (902)
...|..|..|++.++.-+.-++.++..+
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333333333
No 260
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.33 E-value=1.6e+02 Score=26.86 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHH
Q 002598 161 ETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNE 234 (902)
Q Consensus 161 Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~e 234 (902)
|.+..+.+++.||-+|---+ --|.+...+.. -...+.+-++|-.||.++..+++++.-+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI-------~fLee~l~~~~------~~~~~~~~keNieLKve~~~L~~el~~~~~ 64 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRI-------YFLEERLQKLG------PESIEELLKENIELKVEVESLKRELQEKKK 64 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHH-------HHHHHHHHhcc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777765322 22333333211 134567788888888888888888776553
No 261
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.09 E-value=2.7e+02 Score=26.21 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=23.1
Q ss_pred HhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHH
Q 002598 849 MINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQ 897 (902)
Q Consensus 849 ~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq 897 (902)
++..+.+.-...++..+..+...+..|+..+++...-..++.+.=.++|
T Consensus 56 fv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 56 LVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444555555555555444444444444444443
No 262
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.03 E-value=95 Score=37.15 Aligned_cols=67 Identities=28% Similarity=0.364 Sum_probs=47.9
Q ss_pred cHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVR 272 (902)
Q Consensus 200 e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvR 272 (902)
....++.+++.+.++|..|+.|-..| |..|.+++.|-..+-.--+-+..+.+..|..|.++++.++.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L------~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERL------QKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999888755 44455555555444444556677788888888888877753
No 263
>PRK00106 hypothetical protein; Provisional
Probab=44.70 E-value=6.8e+02 Score=30.71 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 002598 138 HDAVMKASMEFEQSLMILEEKL 159 (902)
Q Consensus 138 ~eav~k~s~Ewek~r~eLE~KL 159 (902)
.++..+...++...|.+++..+
T Consensus 71 ke~~lEaeeEi~~~R~ElEkel 92 (535)
T PRK00106 71 KELLLEAKEEARKYREEIEQEF 92 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333455555565665444
No 264
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=44.53 E-value=1.9e+02 Score=32.42 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcccccccchhHHHhhhccCchhhccccchhhccccccccccCCCCCCCC-CCCCCcccccC
Q 002598 689 DFNKFANDLSIALEWIMNHCFSLQDVSSMKDEIKKHFDWDEVRSESEAEVGMVYQFTEADGLHLPRGQ-SSCLPTFAVAN 767 (902)
Q Consensus 689 ~le~F~~El~~~L~wi~n~cfs~~d~s~~~d~ikk~fd~~eS~s~~e~e~~~~~~~~~~dk~~l~~~~-~~~~~~~~~sn 767 (902)
++-+|+.||... +.+..|+|.+. .++. |+.-.|+-.|- .|-.. ++|..+...++
T Consensus 77 t~mk~IeeVq~S---~~~LrlTC~~~-----------------~~s~---Gv~l~fnGldd--epG~~IVDC~~~~~isd 131 (264)
T PF07246_consen 77 TMMKIIEEVQLS---ISNLRLTCIGS-----------------LGSE---GVSLDFNGLDD--EPGHNIVDCDTFKIISD 131 (264)
T ss_pred hHHHHHHHHhcc---cccceeeecCC-----------------CCcc---eeEEecCCCCC--CCCCeeEecCCCCEeee
Confidence 567899999885 56888999885 2222 33334433332 44433 37888766666
Q ss_pred CcccCCCCCC
Q 002598 768 GHYFSHKKEL 777 (902)
Q Consensus 768 ~~~~~~~~e~ 777 (902)
.-....++.+
T Consensus 132 Lgv~vg~g~v 141 (264)
T PF07246_consen 132 LGVGVGDGRV 141 (264)
T ss_pred cccccccccc
Confidence 5554555544
No 265
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.08 E-value=4e+02 Score=33.17 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHH
Q 002598 244 DESHKQHLESVKKIAK 259 (902)
Q Consensus 244 eaA~KQhlEsvKKIaK 259 (902)
+++...+.....+...
T Consensus 380 ~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 380 EAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777666654
No 266
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.83 E-value=62 Score=27.86 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=10.0
Q ss_pred HHHHHhhhhHHHhhHhhhHHH
Q 002598 202 NALMVRLDSTEKENASLKYEV 222 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl 222 (902)
..|...+..+..++..|+.++
T Consensus 43 ~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334444444555555555444
No 267
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.54 E-value=4.2e+02 Score=27.91 Aligned_cols=75 Identities=28% Similarity=0.271 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 002598 115 LDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (902)
Q Consensus 115 LD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~k 194 (902)
+..|-++.-+=+..++.+-+....++..+...++.+.|.++|..+.+-..+|.... +-|..|+..+..-.+.+
T Consensus 29 ~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el~~~E-------~rl~~rE~~L~~~~~~L 101 (201)
T PF12072_consen 29 LEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKELQRLE-------KRLQQREEQLDRRLEQL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 44555555556666677788888888888889999999999888877766655433 34555665555444444
Q ss_pred hh
Q 002598 195 TQ 196 (902)
Q Consensus 195 s~ 196 (902)
..
T Consensus 102 ~~ 103 (201)
T PF12072_consen 102 EK 103 (201)
T ss_pred HH
Confidence 33
No 268
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=43.34 E-value=3.2e+02 Score=31.70 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH
Q 002598 159 LAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 159 L~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE 230 (902)
+.++...|.++..+-..-..-+..|++.|. .+....-.+...++.+|..++.+...+---+-.+..+|.
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333344443333332223334444442 233333334444455555555444444444444433333
No 269
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=42.93 E-value=6.8e+02 Score=30.25 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHH
Q 002598 71 KKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (902)
Q Consensus 71 kqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeC 122 (902)
|+|.+-----..|.-.||.+..-+.+.|+.++-......-.--||+.-|+|.
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea 292 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA 292 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh
Confidence 5565444455689999999999999999999988665555555666666644
No 270
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=42.82 E-value=1.9e+02 Score=27.73 Aligned_cols=61 Identities=33% Similarity=0.388 Sum_probs=36.2
Q ss_pred cHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 200 DSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 200 e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
....+..+|..+++++..|+..-+.+-.++.-+..+..-... + .+...+|.+++++++.-|
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~--~------~~~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE--D------EELSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--c------hHHHHHHHHHHHHHHHHH
Confidence 345667788888888888887777777666655555444433 2 333444455555444333
No 271
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.75 E-value=1.1e+02 Score=36.28 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=20.9
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQK 821 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~ 821 (902)
.+++..++.+.+.++..++.+.+++..+..++.-.+.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666655555544333
No 272
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.42 E-value=49 Score=31.15 Aligned_cols=64 Identities=30% Similarity=0.371 Sum_probs=45.2
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 110 ERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 110 dRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
-.+.++++.|..|-++|..+ +..-+-.+.-.+.....++-...|-.++...+++|..++-||..
T Consensus 5 ~eId~lEekl~~cr~~le~v--e~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAV--ESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHH--HHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 35678888888888888766 22222222233456677777778888888889999999999854
No 273
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.37 E-value=4.6e+02 Score=28.06 Aligned_cols=68 Identities=29% Similarity=0.357 Sum_probs=44.5
Q ss_pred HHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhH----HHHHHHHHHHHHHHHHHHHHHHH
Q 002598 202 NALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADES----HKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA----~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
+.|....+.++.....|..++..+.++.+--|-.|.+.+..+..- ..+-.+.|.|+-.+|..|.+|+.
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQ 203 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777778888888888888888888777765553322 22334455566666666655553
No 274
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.14 E-value=39 Score=36.31 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=31.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 002598 243 ADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPA 279 (902)
Q Consensus 243 aeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpA 279 (902)
.+.-.+..--..+||++|+||...+|--+.|.-||||
T Consensus 21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpa 57 (218)
T KOG1655|consen 21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPA 57 (218)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445556666779999999999999999999999997
No 275
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.13 E-value=4.6e+02 Score=28.03 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
..|-.--..||+-+..+++.|.+.+.+...+.+ .|-..-.+....+...+..-..+..+-=.++..|..|..|+..+
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~---~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNR---ERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555555444331 12222222222222333333344444444444445555444444
Q ss_pred HHH
Q 002598 226 GKE 228 (902)
Q Consensus 226 qKE 228 (902)
..+
T Consensus 209 ~~~ 211 (221)
T PF05700_consen 209 KRK 211 (221)
T ss_pred HHH
Confidence 443
No 276
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.05 E-value=2.7e+02 Score=25.42 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH-HHhhHhHhHHHHHHHHHHHH--------HHHHhhhhHHHh
Q 002598 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQ-KMINEDLDTQLKVARVDLNE--------ACQKLSSLEVEL 879 (902)
Q Consensus 809 ~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~-~~~~e~Ldt~~~~~e~eln~--------~~~K~ssLE~EL 879 (902)
+..++.+..+.+..+..+...+..+++...-+..+|... ..+..-|+.+-..+=.+|+. +..+...|+..+
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777777666666666666443 33334445444444444443 334444444444
Q ss_pred hhhhhcchHH
Q 002598 880 EDKSNCCEEL 889 (902)
Q Consensus 880 e~~k~~ceel 889 (902)
..=...|..+
T Consensus 89 ~~l~~~~~~~ 98 (127)
T smart00502 89 EKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 277
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=41.91 E-value=6.5e+02 Score=30.07 Aligned_cols=48 Identities=27% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 002598 137 IHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKE 184 (902)
Q Consensus 137 i~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~ 184 (902)
.--|+.+--.+|++++.+|+.+|+..-+++..+.-.-.+|.++|..|+
T Consensus 272 ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~ 319 (421)
T KOG2685|consen 272 VELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKE 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 334445556899999999999999998888877766666666665544
No 278
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.84 E-value=1.3e+02 Score=34.48 Aligned_cols=89 Identities=20% Similarity=0.251 Sum_probs=57.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHH-HHHHHhhhhHHHhhhhh
Q 002598 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLN-EACQKLSSLEVELEDKS 883 (902)
Q Consensus 805 ~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln-~~~~K~ssLE~ELe~~k 883 (902)
|.++-+.+...+++.|.+-+..+..++.+.+.....-..|..|+---++|-..++.++.... +....+..|+.++..++
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888888887777666555555554333333333333322111 33555778888888888
Q ss_pred hcchHHHHHH
Q 002598 884 NCCEELEATC 893 (902)
Q Consensus 884 ~~ceelea~C 893 (902)
...-|.++.|
T Consensus 82 ~~l~DmEa~L 91 (330)
T PF07851_consen 82 CQLFDMEAFL 91 (330)
T ss_pred hhHHHHHhhC
Confidence 8888877654
No 279
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.82 E-value=5.1e+02 Score=29.22 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=48.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q 002598 75 KMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMI 154 (902)
Q Consensus 75 KvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~e 154 (902)
+-+-..|..-|.|.-+|.=|++.|+++...+-. -+.-.-....-..|++.|...+.|-+....+. .+-++.-.+
T Consensus 152 ~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~-~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL-----~~~Eke~~e 225 (269)
T PF05278_consen 152 KEMIATLKDLESAKVKVDWLRSKLEEILEAKEI-YDQHETREEEKEEKDRKLELKKEELEELEEEL-----KQKEKEVKE 225 (269)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 335556677777888888888888886644322 22222233333345555555544444332221 111222224
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhH
Q 002598 155 LEEKLAETSKRLAKLGVENTHLTK 178 (902)
Q Consensus 155 LE~KL~Ea~k~L~~~~aEn~~L~~ 178 (902)
+..++.+...+|.++..+-+.|++
T Consensus 226 ~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 226 IKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444443
No 280
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=41.23 E-value=1.4e+02 Score=26.60 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHH
Q 002598 253 SVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTE 332 (902)
Q Consensus 253 svKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~e 332 (902)
.-..|+++...+++|+.+-++.|-.|..=..++.|++.+..+. .+.+..+-.
T Consensus 12 i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i----------------------------~~~~~~~~~ 63 (103)
T PF00804_consen 12 IREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEI----------------------------KQLFQKIKK 63 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 3456889999999999999988877653345777777665431 112344556
Q ss_pred HHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhH
Q 002598 333 QLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSE 371 (902)
Q Consensus 333 rL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~ 371 (902)
+|..|+..+. ..+......++.+.-++.|+.-..|+..
T Consensus 64 ~lk~l~~~~~-~~~~~~~~~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 64 RLKQLSKDNE-DSEGEEPSSNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp HHHHHHHHHH-HHHCTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 6777766655 3344555666777777777777766654
No 281
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=40.39 E-value=51 Score=36.27 Aligned_cols=31 Identities=35% Similarity=0.457 Sum_probs=26.9
Q ss_pred HHHHHhhhhHHHhhHhhhHHHHHHHHHHHHH
Q 002598 202 NALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (902)
Q Consensus 202 ~~L~~rLes~EKEN~sLKyEl~~lqKELEIR 232 (902)
...+.|...++|||.+|+.++.+++++|.-.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999997643
No 282
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.25 E-value=5.6e+02 Score=29.96 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=3.4
Q ss_pred hHhhhHHHH
Q 002598 48 DVKNLNDKL 56 (902)
Q Consensus 48 ~~k~LneKL 56 (902)
++..+..++
T Consensus 98 ~~~~~~~~~ 106 (457)
T TIGR01000 98 QKQLLEQQL 106 (457)
T ss_pred HHHHHHHHH
Confidence 333333333
No 283
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.16 E-value=3.6e+02 Score=28.34 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHH
Q 002598 90 EVVSLKQELDAALQQRDTGEERLIHLDAALKEC 122 (902)
Q Consensus 90 E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeC 122 (902)
+...++..++.+..+...++.++..|...|...
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777777777777777766666655
No 284
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.03 E-value=1.3e+02 Score=32.19 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHH
Q 002598 326 RINFLTEQLRAMEEENNSLKEVLDKKTNELQFSR 359 (902)
Q Consensus 326 ~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr 359 (902)
....+.+=|..+|+.-..|...|+.|..|||.-|
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778899999999999999999999998643
No 285
>PF15456 Uds1: Up-regulated During Septation
Probab=39.84 E-value=4e+02 Score=26.63 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHhhHHHHHHHH
Q 002598 89 AEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFV--------------REEQEQRIHDAVMKASMEFEQSLMI 154 (902)
Q Consensus 89 ~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~--------------rEEqEqki~eav~k~s~Ewek~r~e 154 (902)
.||..||+++-......-.+..++. |+-.++..-.-|..+ -..++.-...... +-.+|..--..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~r-k~ee~~~eL~~ 99 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDR-KCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3788999999988888888888887 777777766655554 1222222222222 24566555566
Q ss_pred HHHHHHHHHHHH
Q 002598 155 LEEKLAETSKRL 166 (902)
Q Consensus 155 LE~KL~Ea~k~L 166 (902)
+|+++.+...+|
T Consensus 100 le~R~~~~~~rL 111 (124)
T PF15456_consen 100 LENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 286
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.75 E-value=4.4e+02 Score=27.13 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVL 225 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~l 225 (902)
.+.+.....+...++++..++..++. .-+..|+.+..+...++..|.++|.. +...|+.+++.-
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k-------------~~~~~lr~~~e~L~~eie~l~~~L~~---ei~~l~a~~klD 110 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRK-------------SEFAELRSENEKLQREIEKLRQELRE---EINKLRAEVKLD 110 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55555555566666666555443221 12334444444444444444333321 222222222211
Q ss_pred --HHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002598 226 --GKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRLPG 277 (902)
Q Consensus 226 --qKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPg 277 (902)
..-.++|.+.+.+..+-.+.-+|-. ..|+.|-++.-.+|.=+=|.+.|
T Consensus 111 ~n~eK~~~r~e~~~~~~ki~e~~~ki~----~ei~~lr~~iE~~K~~~lr~~~g 160 (177)
T PF07798_consen 111 LNLEKGRIREEQAKQELKIQELNNKID----TEIANLRTEIESLKWDTLRWLVG 160 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0013566666666666545444433 33455655555555444344433
No 287
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.51 E-value=5.9e+02 Score=30.27 Aligned_cols=35 Identities=34% Similarity=0.374 Sum_probs=18.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002598 121 ECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (902)
Q Consensus 121 eCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~ 163 (902)
+|.+|-..+.||+ ++. .+|-|.+..+||.|=.+++
T Consensus 339 ec~rQ~qlaLEEK------aaL--rkerd~L~keLeekkrele 373 (442)
T PF06637_consen 339 ECARQTQLALEEK------AAL--RKERDSLAKELEEKKRELE 373 (442)
T ss_pred HHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHH
Confidence 6777777776654 122 2444444445555544443
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.41 E-value=1.8e+02 Score=31.65 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH
Q 002598 155 LEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 155 LE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE 230 (902)
|+++.+.+..++.+++.|-.. .......++.+..+|+...+...+|..-|..|-.-++.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~--------------~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEK--------------KQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 555555555555555544222 12222334445556666666666666666666666655544
No 289
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.27 E-value=2e+02 Score=30.96 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=39.2
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcch
Q 002598 823 VSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCE 887 (902)
Q Consensus 823 i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ce 887 (902)
..+|.++|++...-...+-.++++-+..++.=+.+...+.-++|.+...+..|--+|..=+.|-.
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dp 147 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDP 147 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 33445555555444444455666666666666666666677777777667777666665555443
No 290
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=39.22 E-value=1e+03 Score=31.11 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHhhhhh----hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHH
Q 002598 77 AQEAITGRE----KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQ 150 (902)
Q Consensus 77 aeEAV~GwE----KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek 150 (902)
-+++++|.+ .+|.|+..+.-.|....+..++-.+-+--.-++|+..-..|...+++=-++..++...+..-+.+
T Consensus 125 lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k 202 (1265)
T KOG0976|consen 125 LQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEK 202 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666654 46666677777777777666666666666677777777777777777777777776665444433
No 291
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=38.78 E-value=4.4e+02 Score=31.78 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002598 91 VVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLG 170 (902)
Q Consensus 91 ~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~ 170 (902)
+..-|+.++...++.---+-.......|-|+.|.|||-.- |.+.-.+ -=+-++--=....+.-++++|..-+
T Consensus 449 IlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~----Q~LtkSa----~PLgkl~D~i~eD~daMq~EL~mWr 520 (583)
T KOG3809|consen 449 ILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKL----QDLTKSA----YPLGKLFDFINEDIDAMQKELEMWR 520 (583)
T ss_pred HHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHH----HHHHHhh----ccHHHHHhhhhhhHHHHHHHHHHHH
Confidence 5667777887777777777777788889999888887542 2111111 1112222222344566677788888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHH
Q 002598 171 VENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEV 222 (902)
Q Consensus 171 aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl 222 (902)
.|+..-+.. |+.+.........-|+.-|+.++++++.-|.++
T Consensus 521 se~rq~~~e----------lq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i 562 (583)
T KOG3809|consen 521 SEQRQNEQE----------LQNEQAATFGASEPLYNILANLQKEINDTKEEI 562 (583)
T ss_pred HHHHHhHHH----------HHhhhhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 888764433 333444344445567777777777777766655
No 292
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.45 E-value=1.7e+02 Score=32.02 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=58.9
Q ss_pred cchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH----------hhHhHhHHH---
Q 002598 792 EAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKM----------INEDLDTQL--- 858 (902)
Q Consensus 792 ~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~----------~~e~Ldt~~--- 858 (902)
.+.|+++|++|-..+-.++-++-|+.--.. -..++ .-..|.+..++||++++.-+. +++.|....
T Consensus 37 ~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~-~~diK-dk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~d 114 (233)
T PF04065_consen 37 QNQKEKLEADLKKEIKKLQRLRDQIKTWLS-SNDIK-DKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLD 114 (233)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcc-Ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccC
Confidence 468999999999999977777766543321 11222 345688888888988887654 455555432
Q ss_pred --HH--------HHHHHHHHHHHhhhhHHHhh
Q 002598 859 --KV--------ARVDLNEACQKLSSLEVELE 880 (902)
Q Consensus 859 --~~--------~e~eln~~~~K~ssLE~ELe 880 (902)
.. +..-|.++..++..+|.|+|
T Consensus 115 p~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E 146 (233)
T PF04065_consen 115 PKEKEKEEARDWLKDSIDELNRQIEQLEAEIE 146 (233)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22346778889999999988
No 293
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.40 E-value=6.6e+02 Score=28.73 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002598 255 KKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 255 KKIaKLEAECqRLR~lvRK 273 (902)
+.|.+||.|..|++.=+-|
T Consensus 109 kqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688999999998876655
No 294
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.16 E-value=5.8e+02 Score=28.02 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=71.8
Q ss_pred hcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHh----hhhhhhhHHHHHHHHHhhhhhhHHHHHH
Q 002598 62 ECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGE----ERLIHLDAALKECMDQLHFVREEQEQRI 137 (902)
Q Consensus 62 ~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lE----dRvshLD~ALKeCmrQLr~~rEEqEqki 137 (902)
+=..-|-+|++|+|.--.++.--+|.+.++..-++.--+.++..+..| ..-.|.+.-|++ +..+.+..+|=++.|
T Consensus 27 e~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre-~e~~~q~k~Eiersi 105 (222)
T KOG3215|consen 27 EGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLRE-IENLVQKKLEIERSI 105 (222)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 334567899999999999998888888666555444222222221111 111122222333 334555666666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH------HHHHHHHHHhhhhhhhhcHHHHHHhhhhH
Q 002598 138 HDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLA------KEKLIEDLGKQRTQAEADSNALMVRLDST 211 (902)
Q Consensus 138 ~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~------k~~~i~eL~e~ks~ae~e~~~L~~rLes~ 211 (902)
+.+-.++. .|-.+|.++.- ...=+.|-.+|++.+.+ =.+.+.+|.+..++.+..-+.+..+|+.-
T Consensus 106 ~~a~~kie--------~lkkql~eaKi-~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelr 176 (222)
T KOG3215|consen 106 QKARNKIE--------LLKKQLHEAKI-VRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELR 176 (222)
T ss_pred HHHHHHHH--------HHHHHHHHHHH-HHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55544321 22233333322 11223455556655542 23445555555554444444444555544
Q ss_pred HHhhHhh
Q 002598 212 EKENASL 218 (902)
Q Consensus 212 EKEN~sL 218 (902)
-|+-..|
T Consensus 177 Rkqf~~l 183 (222)
T KOG3215|consen 177 RKQFKYL 183 (222)
T ss_pred hhcchHH
Confidence 4443333
No 295
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.97 E-value=1.4e+02 Score=29.91 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHh
Q 002598 821 KIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVEL 879 (902)
Q Consensus 821 ~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~EL 879 (902)
+.|..|-..|+...+-...+.+++ .++.+|++ ....+++.+++-+..||..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV---~~v~~dv~----~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEV---TEVREDVS----QIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH---HHHHhhHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444 22222222 23455555555555555544
No 296
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.92 E-value=3.2e+02 Score=24.99 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002598 94 LKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLG 170 (902)
Q Consensus 94 lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~ 170 (902)
|...|..+..+....++-+.+|++....+..+ ...+-..+..+|+.++.-|+..=..+-.+|.+..
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~-----------~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~ 70 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEEN-----------AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556655566666666555555533 3333445556666666666555555544444333
No 297
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.82 E-value=8.1e+02 Score=29.62 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=82.1
Q ss_pred cccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhH---HHHHHHHHhhhhhhHHHHHHHH
Q 002598 63 CNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDA---ALKECMDQLHFVREEQEQRIHD 139 (902)
Q Consensus 63 ~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~---ALKeCmrQLr~~rEEqEqki~e 139 (902)
.++=+.++|.+---|+|+|+--++--.|+...+..-...... -++-|+..|+. +|+.|.--|+..-|.+..-.|.
T Consensus 259 ~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~E--nlqmr~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 259 YHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKE--NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344577778888889999999888888888866554444333 45555555553 5888888887776655422211
Q ss_pred HHHHHhhHHHHHHHHH--HHHHHHH-HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHH--------Hhh
Q 002598 140 AVMKASMEFEQSLMIL--EEKLAET-SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALM--------VRL 208 (902)
Q Consensus 140 av~k~s~Ewek~r~eL--E~KL~Ea-~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~--------~rL 208 (902)
-+.+.|.++..| +.++-.- ...|-+...|.. +.+ .+|.+|+.++.++--...++- +|.
T Consensus 337 ----~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke----atq---ELieelrkelehlr~~kl~~a~p~rgrsSaRe 405 (502)
T KOG0982|consen 337 ----SSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE----ATQ---ELIEELRKELEHLRRRKLVLANPVRGRSSARE 405 (502)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHH---HHHHHHHHHHHHHHHHHHHhhccccCchhHHH
Confidence 122222222111 1111110 001222111211 111 367777777765544433332 677
Q ss_pred hhHHHhhHhhhHHHHHHHH
Q 002598 209 DSTEKENASLKYEVRVLGK 227 (902)
Q Consensus 209 es~EKEN~sLKyEl~~lqK 227 (902)
..++.|..-||.+=+.+..
T Consensus 406 ~eleqevkrLrq~nr~l~e 424 (502)
T KOG0982|consen 406 IELEQEVKRLRQPNRILSE 424 (502)
T ss_pred HHHHHHHHHhccccchhhh
Confidence 7788777777765444433
No 298
>PLN03188 kinesin-12 family protein; Provisional
Probab=37.56 E-value=1.2e+03 Score=31.65 Aligned_cols=68 Identities=31% Similarity=0.340 Sum_probs=33.8
Q ss_pred hhhHHHhhHhhhHHHHHHHH------HHHHHHHHHHhhhhhhHhHH------HHHHHHHHH-HHHH----HHHHHHHHH-
Q 002598 208 LDSTEKENASLKYEVRVLGK------ELEIRNEEREFNRRTADESH------KQHLESVKK-IAKL----ESECQRLRV- 269 (902)
Q Consensus 208 Les~EKEN~sLKyEl~~lqK------ELEIR~eERels~qSaeaA~------KQhlEsvKK-IaKL----EAECqRLR~- 269 (902)
-+.+-+||.+||..|+---+ ||=+|-.|-+- |+-.|. +|..+-.+| |.|| |-|.--|+.
T Consensus 1175 r~~~~~enk~l~~qlrdtaeav~aagellvrl~eaee---a~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~ 1251 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEE---ALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQL 1251 (1320)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888876654332 24444444332 222222 333333344 5544 345555555
Q ss_pred HHHhcCCCh
Q 002598 270 LVRKRLPGP 278 (902)
Q Consensus 270 lvRK~lPgp 278 (902)
|+--|||+-
T Consensus 1252 ~aes~l~~~ 1260 (1320)
T PLN03188 1252 VAESRLPKE 1260 (1320)
T ss_pred HhhccCChh
Confidence 555666665
No 299
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.55 E-value=1.2e+02 Score=35.49 Aligned_cols=72 Identities=25% Similarity=0.256 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 002598 810 NSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDK 882 (902)
Q Consensus 810 e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~ 882 (902)
+.++.++++..+.+..++..|..+++.+. .-..-......+..|-.....+..+++++..++..|+.+|+.-
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555554322 1111112223333444555556666777777777777666654
No 300
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.52 E-value=5.5e+02 Score=27.59 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=52.3
Q ss_pred HhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHH
Q 002598 103 QQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAK-LGVENTHLTKALL 181 (902)
Q Consensus 103 ~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~-~~aEn~~L~~al~ 181 (902)
+|...++++|..||.-|++-...+-.+ +.+ +.+|=.+..++.+-+.. +..||..|+.+|.
T Consensus 4 ~~~k~i~~~i~~lE~hl~~l~~~~~~l------------v~k-------~~~L~~~~~~fak~~~~la~~E~~~L~~~L~ 64 (211)
T cd07598 4 NQTKFIQERITNVEKHFGELCQDFAAY------------TRK-------TARLRDKGDELAKSINAYADTENPSLKQGLK 64 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH-------HHHHHHhHHHHHHHHHHHHhccCHHHHHHHH
Confidence 344567777777777777766543322 222 23444445555543322 3456888888887
Q ss_pred HHHHHHHHHHhhhh-hhhhcHHHHHHhhhhHHHhhHhhhHHHH
Q 002598 182 AKEKLIEDLGKQRT-QAEADSNALMVRLDSTEKENASLKYEVR 223 (902)
Q Consensus 182 ~k~~~i~eL~e~ks-~ae~e~~~L~~rLes~EKEN~sLKyEl~ 223 (902)
.=...+..+.+-.. +++.....+..-|.....-+.+.|-.+.
T Consensus 65 ~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K 107 (211)
T cd07598 65 NFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433333332221 3444444444455555555555555553
No 301
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.49 E-value=82 Score=30.58 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHH
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~ 233 (902)
+.+|.+++.+.-+++..|+..+..+..||+.|+.|-+-|.+-|.-..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555556778889999999999999999988877665443
No 302
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.49 E-value=2.5e+02 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=14.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 852 EDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 852 e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
..|+.+...++.+++.+..++..|+.++.+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555444444444444443
No 303
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=37.42 E-value=76 Score=27.52 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=24.2
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLG 226 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lq 226 (902)
-..+-.....+|..++.||..||.+|.-++
T Consensus 20 R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 20 RSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556778999999999999999997654
No 304
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=37.28 E-value=24 Score=27.98 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.0
Q ss_pred hcccchhHHHHhHHHHHHHhhhh
Q 002598 62 ECNAKDDLVKKHAKMAQEAITGR 84 (902)
Q Consensus 62 ~~~~Kd~lVkqhaKvaeEAV~Gw 84 (902)
..+..|.+|++||.+|-|.+-+|
T Consensus 14 ~~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 14 ESTDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HHhCCcHHHHHHHHHHHHHHhcC
Confidence 44667999999999999998887
No 305
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.08 E-value=5.3e+02 Score=27.24 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=46.6
Q ss_pred HHHhhhhHHHhhHhhhHHHHHHHH------------HHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 204 LMVRLDSTEKENASLKYEVRVLGK------------ELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 204 L~~rLes~EKEN~sLKyEl~~lqK------------ELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
|...|+.+-+.|..|..++.-+.. +-+++.++..|+.-. .+-|..=+..=..+..|=.-|-.+|.-+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~-~~eh~rll~LWr~v~~lRr~f~elr~~T 164 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYL-SSEHSRLLSLWREVVALRRQFAELRTAT 164 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544333 345566666666333 4555555555566666666666666666
Q ss_pred HhcCCChHHHhhhhHHHHhhc
Q 002598 272 RKRLPGPAALAKMKNEVEILG 292 (902)
Q Consensus 272 RK~lPgpAala~Mk~Eve~lg 292 (902)
=+- |+.||.|+-..+
T Consensus 165 erd------L~~~r~e~~r~~ 179 (182)
T PF15035_consen 165 ERD------LSDMRAEFARTS 179 (182)
T ss_pred Hhh------HHHHHHHHHHHH
Confidence 553 477888876544
No 306
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.00 E-value=3e+02 Score=35.65 Aligned_cols=89 Identities=25% Similarity=0.252 Sum_probs=46.3
Q ss_pred hhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHH--------------HH--HHHHHHHHhhhhhhHhHHHHHHHHHHHH
Q 002598 194 RTQAEADSNALMVRLDSTEKENASLKYEVRVLGK--------------EL--EIRNEEREFNRRTADESHKQHLESVKKI 257 (902)
Q Consensus 194 ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqK--------------EL--EIR~eERels~qSaeaA~KQhlEsvKKI 257 (902)
+.+-+.+...|.+++..++.|-.-|+.|+.+... .| +|-..++-++.|. .--++|.-+-..+
T Consensus 504 ~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~--~l~~~~~~~~~~~ 581 (913)
T KOG0244|consen 504 KEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQR--KLIKPKPKSEGIR 581 (913)
T ss_pred HHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHH--HHhccchhhHHHH
Confidence 3344555555555555566665555555555443 11 2222333333333 1234455555667
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 002598 258 AKLESECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (902)
Q Consensus 258 aKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~ 290 (902)
+||..|.++++..--. -+.+|+-|-+-
T Consensus 582 ~kl~~ei~~~k~~kv~------l~~~~~~d~ek 608 (913)
T KOG0244|consen 582 AKLLQEIHIAKGQKVQ------LLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHhhhHHH
Confidence 8888888887765321 24556666554
No 307
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.68 E-value=1e+03 Score=30.41 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHH
Q 002598 95 KQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQR 136 (902)
Q Consensus 95 KkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqk 136 (902)
--.|.+...+-..+..||..|+.-||.+-.++..++.|.++.
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl 60 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERL 60 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888999999999999999999999988853
No 308
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.60 E-value=5e+02 Score=26.88 Aligned_cols=83 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred hHhHhhhHHHHHHHHhhcccchhHHHHhHHHHH------HHhhhhhhhhHH--HHHHHHHHHHHHHhhhhHhhhh-----
Q 002598 46 ENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQ------EAITGREKAEAE--VVSLKQELDAALQQRDTGEERL----- 112 (902)
Q Consensus 46 ~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvae------EAV~GwEKAE~E--~~~lKkqLe~a~~q~~~lEdRv----- 112 (902)
..-+..|.++|..+..-+ +.+|+++..++. .++..|-..|.+ +...=.++-++......+-++.
T Consensus 30 ~~~~~~le~~Lk~l~~~~---~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~ 106 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSL---ERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEE 106 (236)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444555555555432222 345555555443 356777777776 4433344444444444433332
Q ss_pred hhhhHHHHHHHHHhhhhhh
Q 002598 113 IHLDAALKECMDQLHFVRE 131 (902)
Q Consensus 113 shLD~ALKeCmrQLr~~rE 131 (902)
.+|-..|+++.+=+..+|+
T Consensus 107 ~~l~~~L~ey~~~~~svk~ 125 (236)
T PF09325_consen 107 ETLGEPLREYLRYIESVKE 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2355666777666666655
No 309
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=36.54 E-value=4.1e+02 Score=29.00 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=26.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHh
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMI 850 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~ 850 (902)
..++..|..+..++..+..++...+..|..++.+++.++..-..++.+++..+..
T Consensus 83 ~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L 137 (334)
T TIGR00998 83 AKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPL 137 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444444444444444444444455555555555555555555555555443
No 310
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.45 E-value=6.9e+02 Score=31.77 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 002598 145 SMEFEQSLMILEEKLAETSK 164 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k 164 (902)
..+.++.+.+|+.+..++.+
T Consensus 543 ~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 543 LKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 311
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=36.41 E-value=8.1e+02 Score=29.21 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTAD 244 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSae 244 (902)
+|..++.=.++|.+.+-.|-..+ ...|.+.++.+-+||+.|+..=..+++-|.--. +
T Consensus 264 el~siRr~Cd~lP~~m~tKveel-------------ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~q----------e 320 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEEL-------------ARSLRAGIERVARENSDLQRQKLEAEQGLQASQ----------E 320 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHH-------------HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHH----------H
Confidence 56666666677766665543333 346778888999999988765444444333222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 245 ESHKQHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 245 aA~KQhlEsvKKIaKLEAECqRLR~lv 271 (902)
+.-|-.-|-.-.-++|-+||-|=-.++
T Consensus 321 akek~~KEAqareaklqaec~rQ~qla 347 (442)
T PF06637_consen 321 AKEKAGKEAQAREAKLQAECARQTQLA 347 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666779999998765543
No 312
>PRK09343 prefoldin subunit beta; Provisional
Probab=36.21 E-value=3.8e+02 Score=26.29 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=9.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhhH
Q 002598 852 EDLDTQLKVARVDLNEACQKLSSLE 876 (902)
Q Consensus 852 e~Ldt~~~~~e~eln~~~~K~ssLE 876 (902)
.+|++++.-++.++..+..+...|+
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333333333333333333
No 313
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=36.05 E-value=8.9e+02 Score=29.56 Aligned_cols=88 Identities=30% Similarity=0.353 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------------------------------hHHHHHHHHHHHHH
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTHL-----------------------------------TKALLAKEKLIEDL 190 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L-----------------------------------~~al~~k~~~i~eL 190 (902)
.+.++.-..|..-|+.+++.|++++.|...| .++|-.|+.-|..|
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverL 465 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERL 465 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444444456666666666666666665544 23344444444444
Q ss_pred HhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHH
Q 002598 191 GKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEER 236 (902)
Q Consensus 191 ~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eER 236 (902)
+.-+..++ ++...-|+-+.+|-...-.||..++.|+.-|..|+
T Consensus 466 Q~lkgelE---kat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 466 QQLKGELE---KATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443332 22334445455555555556666666665555443
No 314
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.95 E-value=1.5e+02 Score=32.27 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=37.7
Q ss_pred HHhhhhhhHHHHHHHHHHH---HHhhHH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 002598 124 DQLHFVREEQEQRIHDAVM---KASMEF-EQSLMILEEKLAETSKRLAKLGVEN 173 (902)
Q Consensus 124 rQLr~~rEEqEqki~eav~---k~s~Ew-ek~r~eLE~KL~Ea~k~L~~~~aEn 173 (902)
.-+|.-|++|.+|||+--. ++..|| ++++.+|+.=....++.+.+..+.|
T Consensus 106 E~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n 159 (216)
T KOG4031|consen 106 EKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN 159 (216)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999997544 445566 7788888887777777777777766
No 315
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.82 E-value=59 Score=27.14 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=16.8
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
...|.+..+++.+||..|+.|+..+...
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666655543
No 316
>PRK11519 tyrosine kinase; Provisional
Probab=35.78 E-value=3.6e+02 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI 840 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~ 840 (902)
..++.+...+.+-++=+..|+++.++.+...+..|+..+..++++
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666677777777777777777777777777777664
No 317
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.77 E-value=1.5e+02 Score=26.04 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 002598 811 SLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (902)
Q Consensus 811 ~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e 852 (902)
.+-+.+.-.+-.|..+|+|++.++++-..++.-++..-.+||
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666778888888888888888888888877887
No 318
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.76 E-value=6.8e+02 Score=28.15 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=28.6
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002598 104 QRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLG 170 (902)
Q Consensus 104 q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~ 170 (902)
...-+++++..+...|++.-++|...|..+.-- +.... .......-.+|+.++++++.+|+.++
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~--d~~~~-~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVF--DPKAQ-SSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555555543211 10000 11111223356666666666555444
No 319
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=35.56 E-value=29 Score=33.76 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002598 146 MEFEQSLMILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
.-.+.++.+|..-+..++++|..+-.++++
T Consensus 26 ~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~ 55 (133)
T PF06148_consen 26 VSLEDLRKDLRSYSKELKNELIELINDDYA 55 (133)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345778888888888888888887777765
No 320
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.52 E-value=4e+02 Score=25.40 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=15.5
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 850 INEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 850 ~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
+..+|+++...++..+..+..+...|+..+.+
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444444443
No 321
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.49 E-value=3.9e+02 Score=35.18 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhhhhccCcccHHHHH-----------------------HHHHHHHHHHHhhc-c---cccccchhHHH
Q 002598 668 ELSDILQQFVHACYGVLNKEADFNKFA-----------------------NDLSIALEWIMNHC-F---SLQDVSSMKDE 720 (902)
Q Consensus 668 eL~~~Le~fvh~C~dlL~gka~le~F~-----------------------~El~~~L~wi~n~c-f---s~~d~s~~~d~ 720 (902)
.|-.||.-+|.--.-|.++...|-+.. .|=+.+|+|+..-. + .-.+..-|++.
T Consensus 325 TLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~ 404 (1041)
T KOG0243|consen 325 TLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKT 404 (1041)
T ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHH
Confidence 566777777777777777777776664 46778899887543 1 11122335666
Q ss_pred hhhcc
Q 002598 721 IKKHF 725 (902)
Q Consensus 721 ikk~f 725 (902)
+-|.+
T Consensus 405 llKd~ 409 (1041)
T KOG0243|consen 405 LLKDL 409 (1041)
T ss_pred HHHHH
Confidence 55544
No 322
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.02 E-value=1.1e+03 Score=30.21 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 145 SMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
..+.++++-+|..+-.++...|.+....+..+---+..+++-+.-|..........+..-...++.++++|.+||-.+-+
T Consensus 547 rneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 547 RNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666665554433332222233333332222222111112222334566666677766666555
Q ss_pred HHHH
Q 002598 225 LGKE 228 (902)
Q Consensus 225 lqKE 228 (902)
-.+.
T Consensus 627 E~kq 630 (786)
T PF05483_consen 627 ESKQ 630 (786)
T ss_pred HHHH
Confidence 5444
No 323
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.32 E-value=2.9e+02 Score=27.22 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhc
Q 002598 806 IDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNC 885 (902)
Q Consensus 806 ~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ 885 (902)
+++++.|-..=.-....+.++-. +..++.....+-.+.+..+.-|-+++.++..++.++......+..|+.++..+...
T Consensus 6 ~~eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 6 TEELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp THHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHH
Q 002598 886 CEELEATC 893 (902)
Q Consensus 886 ceelea~C 893 (902)
..++...|
T Consensus 85 ~~~l~~~~ 92 (150)
T PF07200_consen 85 QDELSSNY 92 (150)
T ss_dssp HHHHHHCH
T ss_pred HHHHHccC
No 324
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=33.89 E-value=1.6e+02 Score=28.69 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002598 127 HFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (902)
Q Consensus 127 r~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~ 165 (902)
..++++....+.++.......|+++..-++.++..+=.+
T Consensus 51 ~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~ 89 (118)
T TIGR01837 51 DAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNR 89 (118)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344566677777776666677877777777776655333
No 325
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.76 E-value=5.3e+02 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=17.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 852 EDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 852 e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
+.-|....-+++..+.+.+.+...|.+|++
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666666666666666654
No 326
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.70 E-value=1.3e+02 Score=36.22 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q 002598 813 MSQLQESQKIVSNSQNELDILKKSKEVIEDQVK 845 (902)
Q Consensus 813 ~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~ 845 (902)
++.|.+.+.+.+.|+.+|+.++....++..+.+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~ 100 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457777888888888888888655444444433
No 327
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.42 E-value=6.2e+02 Score=27.00 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchH
Q 002598 809 SNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEE 888 (902)
Q Consensus 809 ~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~cee 888 (902)
++.|..++.|.+.-+......|.+.+.+-..+......-..-...|-.-+..++..+..+..=...--.+|.++..-=+.
T Consensus 69 veqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLea 148 (188)
T PF05335_consen 69 VEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777776666665555555444455555666666677777777777777788888888888
Q ss_pred HHHHHHHHHHhhc
Q 002598 889 LEATCLELQLQLE 901 (902)
Q Consensus 889 lea~C~ELq~QLe 901 (902)
.-.+...|+.||.
T Consensus 149 Ak~Rve~L~~QL~ 161 (188)
T PF05335_consen 149 AKRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888774
No 328
>PRK00106 hypothetical protein; Provisional
Probab=33.39 E-value=9.9e+02 Score=29.36 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=4.2
Q ss_pred HHHHHHhhh
Q 002598 536 ILELILEQN 544 (902)
Q Consensus 536 vl~~Ileq~ 544 (902)
++.+|..+|
T Consensus 414 v~~aI~~HH 422 (535)
T PRK00106 414 VVNTIASHH 422 (535)
T ss_pred HHHHHHHhC
Confidence 444554443
No 329
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.29 E-value=32 Score=32.73 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 002598 96 QELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ 135 (902)
Q Consensus 96 kqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEq 135 (902)
++...+..++..|+.++.++...-..+-+.|-.++..-++
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~ 78 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRALIQAQETADE 78 (131)
T ss_dssp HHHHHHHHHHHCCCCT------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHH
Confidence 3333334444444444444433333333334444333333
No 330
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.16 E-value=7.1e+02 Score=27.57 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002598 98 LDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLT 177 (902)
Q Consensus 98 Le~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~ 177 (902)
|....+.+...++.+-.+|.+|.+.-+++...+...+....+.-.. ..........|+.+....+..+..+...-..
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l-~e~~~~~~~~le~~~~~~ee~~~~L~ekme~-- 254 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKL-EEKQKEQEQMLEQQERSYEEHIKQLKEKMEE-- 254 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHH
Q 002598 178 KALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG 226 (902)
Q Consensus 178 ~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lq 226 (902)
+|..+..+...-..+-..+-..+. .+..+++...|+-|+..|+
T Consensus 255 ----e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 255 ----EREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 331
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.11 E-value=3.8e+02 Score=24.48 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 002598 138 HDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALL 181 (902)
Q Consensus 138 ~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~ 181 (902)
+....+.-++|++.-.+|...+..++++.+.+.+-++.|+.-+.
T Consensus 16 q~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 16 QQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34466667899999888888888888887777777777666554
No 332
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=32.71 E-value=7.3e+02 Score=27.61 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH----------hHhHHHHHHHH
Q 002598 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE----------DLDTQLKVARV 863 (902)
Q Consensus 794 ~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e----------~Ldt~~~~~e~ 863 (902)
....++..+..+..+++.++.++...+..+..++.++..++..-..+..+++..+..++ ...+.+..+++
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~ 166 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEV 166 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555555555666666666666665666666665554432 22334444555
Q ss_pred HHHHHHHHhhhhHH
Q 002598 864 DLNEACQKLSSLEV 877 (902)
Q Consensus 864 eln~~~~K~ssLE~ 877 (902)
+++.+..+...++.
T Consensus 167 ~l~~a~~~~~~~~~ 180 (346)
T PRK10476 167 SLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 333
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.70 E-value=5.3e+02 Score=25.98 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhh
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASL 218 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sL 218 (902)
+.++++..++...++..++.....++-....|
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666555555444433
No 334
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.47 E-value=1.3e+02 Score=28.51 Aligned_cols=48 Identities=29% Similarity=0.297 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 002598 88 EAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQ 135 (902)
Q Consensus 88 E~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEq 135 (902)
++|..++-.+|+....-.-.||+|..||.+-|++-++-=|++|-+-.+
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999998877777665443
No 335
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=32.18 E-value=34 Score=35.32 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 002598 187 IEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQR 266 (902)
Q Consensus 187 i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqR 266 (902)
+..+..++...+++..-|...+.-+..||..|+-|+..-+.. ..++-..++.|+.|++.
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~---------------------lq~se~~~~~Lpee~~~ 68 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQK---------------------LQESEQEVAQLPEEVKH 68 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhhhhhhcCcchHHH
Confidence 344444555555555555566666666666666665432222 25667788999999999
Q ss_pred HHHHHHhc
Q 002598 267 LRVLVRKR 274 (902)
Q Consensus 267 LR~lvRK~ 274 (902)
|+-|+.++
T Consensus 69 Lqfl~~~~ 76 (181)
T PF09311_consen 69 LQFLVSIK 76 (181)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 99998653
No 336
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=31.95 E-value=1.3e+03 Score=30.29 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=71.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH---HHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhH
Q 002598 140 AVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKE---KLIEDLGKQRTQAEADSNALMVRLDSTEKENA 216 (902)
Q Consensus 140 av~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~---~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~ 216 (902)
+....-.+|...+ +.++++..+.++|..+.++...|+-.+..++ +-...|-+++...+.++..+.+++..+..+++
T Consensus 727 ~F~e~A~~~qq~~-q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~ 805 (984)
T COG4717 727 AFREAAREEQQLT-QRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIA 805 (984)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777766 8889999999999988888888887776543 33444555666666666777777777766654
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHH
Q 002598 217 ---------SLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKK 256 (902)
Q Consensus 217 ---------sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKK 256 (902)
.|+...+++-..|+--.... .|.+.|--+-.+|++..|+
T Consensus 806 ~lE~g~~~a~lr~~~~slk~~l~e~ar~W-asl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 806 QLEGGGTVAELRQRRESLKEDLEEKARKW-ASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 34555555554444333222 2444555555556655554
No 337
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=31.83 E-value=1.1e+03 Score=29.60 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHhHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhHH
Q 002598 71 KKHAKMAQEAITGRE-KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECM-DQLHFVREEQEQRIHDAVMKASMEF 148 (902)
Q Consensus 71 kqhaKvaeEAV~GwE-KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCm-rQLr~~rEEqEqki~eav~k~s~Ew 148 (902)
++|.++|-|-+.|-+ .|-.+..++-........ ...++..+.|.+..++--| .|+.....-+-+.|.+.|....+.+
T Consensus 342 ~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~-~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~ 420 (657)
T KOG1854|consen 342 ELHIKRAIEKQRLQDSRALRAQLEYELEAHRREL-QQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLL 420 (657)
T ss_pred HHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887662 121111111111111111 2245666777777777655 4666666667788888887644433
Q ss_pred HHHHHHHHHHHHHH
Q 002598 149 EQSLMILEEKLAET 162 (902)
Q Consensus 149 ek~r~eLE~KL~Ea 162 (902)
+ .+.+.+|.|+
T Consensus 421 ~---~e~~~~~~e~ 431 (657)
T KOG1854|consen 421 T---IEFKQKLEEA 431 (657)
T ss_pred h---HHHHHHHHHH
Confidence 3 2555566665
No 338
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.69 E-value=1.1e+02 Score=25.77 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.1
Q ss_pred cHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 200 DSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 200 e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
....|..++..++.+|..|+.++..|++|
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34577889999999999999999888765
No 339
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=31.65 E-value=5.2e+02 Score=26.67 Aligned_cols=79 Identities=23% Similarity=0.205 Sum_probs=43.5
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHH--------HHHHHHHHHHHhhhhHhhhhhhhh
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVV--------SLKQELDAALQQRDTGEERLIHLD 116 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~--------~lKkqLe~a~~q~~~lEdRvshLD 116 (902)
.+..|+.--.+|..|...+.....-+..+ --|...+-+.. -.-+.|+...+++..|.++...|+
T Consensus 16 Ae~a~~~q~~~l~~a~~~~~~a~~~l~dy--------r~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le 87 (152)
T PF07321_consen 16 AERALRRQERRLQEARAALQQAEQELADY--------RQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELE 87 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555666666666655443322222221 23444443322 123567777777777777777777
Q ss_pred HHHHHHHHHhhhhhh
Q 002598 117 AALKECMDQLHFVRE 131 (902)
Q Consensus 117 ~ALKeCmrQLr~~rE 131 (902)
+.+.+..++++..++
T Consensus 88 ~~~~~a~~~~~~e~~ 102 (152)
T PF07321_consen 88 QQLAEAEEQLEQERQ 102 (152)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666655443
No 340
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.58 E-value=6e+02 Score=27.49 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHH
Q 002598 148 FEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGK 227 (902)
Q Consensus 148 wek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqK 227 (902)
-...+.+|+..|+..++...+++.-- ++.++-++-++++ -..|...+.++.|+..+||.+|--.+.
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~--------en~K~~~e~tEer------~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESI--------ENRKAGREETEER------TDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHH--------HHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556678888888877766665422 2222333323322 235556666666666666666655543
Q ss_pred H-HHHHHHHHHhhhhhhHhHH
Q 002598 228 E-LEIRNEEREFNRRTADESH 247 (902)
Q Consensus 228 E-LEIR~eERels~qSaeaA~ 247 (902)
= -+++-.=+.....+||+|+
T Consensus 145 ~dpqv~~k~~~~~K~~~eaan 165 (203)
T KOG3433|consen 145 TDPQVFEKKVHLEKTMAEAAN 165 (203)
T ss_pred cCHHHHHHHHHHHHHHHHHHh
Confidence 2 3333333334444445543
No 341
>PRK12705 hypothetical protein; Provisional
Probab=31.41 E-value=1e+03 Score=29.00 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 131 EEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKL 169 (902)
Q Consensus 131 EEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~ 169 (902)
.+-+....++..+...++...|.++|..+.+...++.+.
T Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 44 KEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466666666777777777776666665555443
No 342
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.40 E-value=3.6e+02 Score=25.67 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=21.5
Q ss_pred hhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHH
Q 002598 850 INEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELE 890 (902)
Q Consensus 850 ~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceele 890 (902)
+-.+.+.-...++..+..+...+.+|+..++.-...-.++.
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555565556666655554444433333
No 343
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.33 E-value=4.7e+02 Score=26.82 Aligned_cols=86 Identities=26% Similarity=0.219 Sum_probs=42.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002598 82 TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAE 161 (902)
Q Consensus 82 ~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~E 161 (902)
+-..+++.|...++.||.++..+...|...+.-.++ |+.- +.....+.+....+++.+|.+
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~ee-Lk~~------------------i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEE-LKKQ------------------IEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH-HHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 333444666667777777776666655553222221 2211 222223334444455555555
Q ss_pred HHH------HHHHhhhhhhhhhHHHHHHHHH
Q 002598 162 TSK------RLAKLGVENTHLTKALLAKEKL 186 (902)
Q Consensus 162 a~k------~L~~~~aEn~~L~~al~~k~~~ 186 (902)
... -|..+.+-|...-++|...+++
T Consensus 81 ~~~~~ai~~al~~akakn~~av~allD~d~l 111 (155)
T PF06810_consen 81 MKKDSAIKSALKGAKAKNPKAVKALLDLDKL 111 (155)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHhcCHHHe
Confidence 544 3555566666555555544433
No 344
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.28 E-value=1.1e+02 Score=25.51 Aligned_cols=38 Identities=37% Similarity=0.315 Sum_probs=29.1
Q ss_pred hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHH
Q 002598 196 QAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRN 233 (902)
Q Consensus 196 ~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~ 233 (902)
|.|.|...|++..+++--+|.+|+.|...|..++.-.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888877776665444
No 345
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.02 E-value=1.6e+02 Score=30.30 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHh
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKE 214 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKE 214 (902)
.|.+|++++..++.+...|+.+.+.+++|
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555555555555555544
No 346
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=31.01 E-value=6.5e+02 Score=28.87 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=59.6
Q ss_pred hhhHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 002598 114 HLDAA---LKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDL 190 (902)
Q Consensus 114 hLD~A---LKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL 190 (902)
.+|-. |--|.--|-++|--=+..+-..+.++.+-|..++.=|-.+=..+=.+|+++.+|.-. +|.+|.+-..+|
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAme---iL~aRqkkAeeL 230 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAME---ILDARQKKAEEL 230 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444 335777777777766677778888889999999998888888888899999999765 566666666666
Q ss_pred Hhhhh
Q 002598 191 GKQRT 195 (902)
Q Consensus 191 ~e~ks 195 (902)
+.--.
T Consensus 231 krltd 235 (302)
T PF07139_consen 231 KRLTD 235 (302)
T ss_pred HHHHH
Confidence 65443
No 347
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=30.96 E-value=8.7e+02 Score=27.95 Aligned_cols=44 Identities=32% Similarity=0.318 Sum_probs=35.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHH
Q 002598 81 ITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMD 124 (902)
Q Consensus 81 V~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmr 124 (902)
..+-+++..++..-|+.+|.+..|--.|-=.+.||...++.|..
T Consensus 11 ~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~ 54 (355)
T PF09766_consen 11 QFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLD 54 (355)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 34445667778888899998888777777788999999999984
No 348
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=30.87 E-value=2.8e+02 Score=28.26 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh
Q 002598 183 KEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 183 k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK 219 (902)
.+.--..|+...+++.+-...-+.+++.+-.||..||
T Consensus 59 ~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 59 NEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3444455555555555554444455555555555544
No 349
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.69 E-value=8.9e+02 Score=27.95 Aligned_cols=132 Identities=23% Similarity=0.305 Sum_probs=64.0
Q ss_pred HHhHHHHHHHhhhhhhhhHHH----HHHHHHHHHHHHhhhhHhhhhhh----hhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 002598 71 KKHAKMAQEAITGREKAEAEV----VSLKQELDAALQQRDTGEERLIH----LDAALKECMDQLHFVREEQEQRIHDAVM 142 (902)
Q Consensus 71 kqhaKvaeEAV~GwEKAE~E~----~~lKkqLe~a~~q~~~lEdRvsh----LD~ALKeCmrQLr~~rEEqEqki~eav~ 142 (902)
-.-.++=+.+|.-.-+||.|= -.|=+.|+.+.+.+..|--.+.. |-..|-..+.||+.-+-+-|..+
T Consensus 55 ~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~L----- 129 (310)
T PF09755_consen 55 EENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQL----- 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333456666777777777773 34455577777777666544433 33445444555544443333211
Q ss_pred HHhhHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhHHHH-HHHHHHHHHHhhhhhhhhcHHHHHHhhh
Q 002598 143 KASMEFEQSLMILEEKLAET-------SKRLAKLGVENTHLTKALL-AKEKLIEDLGKQRTQAEADSNALMVRLD 209 (902)
Q Consensus 143 k~s~Ewek~r~eLE~KL~Ea-------~k~L~~~~aEn~~L~~al~-~k~~~i~eL~e~ks~ae~e~~~L~~rLe 209 (902)
+ ++.+.+-..|..+|..+ +..|.+++.|--.|-++|- +-+-++..|..+..+.+++-..|+.+|+
T Consensus 130 e--~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 130 E--QEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred H--HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 11111112222222222 2344445544444444442 3344555555555555555555555555
No 350
>PRK14127 cell division protein GpsB; Provisional
Probab=30.69 E-value=1.1e+02 Score=29.96 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002598 249 QHLESVKKIAKLESEC 264 (902)
Q Consensus 249 QhlEsvKKIaKLEAEC 264 (902)
-+...+|.|++||.++
T Consensus 86 tn~DiLKRls~LEk~V 101 (109)
T PRK14127 86 TNYDILKRLSNLEKHV 101 (109)
T ss_pred chHHHHHHHHHHHHHH
Confidence 5788899999999876
No 351
>PF13166 AAA_13: AAA domain
Probab=30.56 E-value=1.1e+03 Score=28.88 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCC
Q 002598 252 ESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRES 295 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~ 295 (902)
..-..+..++++...|+.-+...- .+...+-.+...+|...
T Consensus 435 ~~~~~~~~~~~~i~~l~~~~~~~~---~~~~~iN~~L~~~g~~~ 475 (712)
T PF13166_consen 435 KAKEEIKKIEKEIKELEAQLKNTE---PAADRINEELKRLGFSN 475 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhCCCC
Confidence 344556667777777766555322 34567888888887653
No 352
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.23 E-value=4.8e+02 Score=24.76 Aligned_cols=62 Identities=29% Similarity=0.369 Sum_probs=45.0
Q ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 212 EKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 212 EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK 273 (902)
.+.-..|+-.+....+-|.--...+.=..+-|+...+.+.+-...|.+|-+++..|+.-..+
T Consensus 38 ~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 38 EKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555566666677788999999999999999999999999877644
No 353
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=30.00 E-value=5.2e+02 Score=25.05 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002598 133 QEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAK 168 (902)
Q Consensus 133 qEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~ 168 (902)
.-..|...+......|+.+...++.+...++..+..
T Consensus 73 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~ 108 (213)
T cd00176 73 DAEEIQERLEELNQRWEELRELAEERRQRLEEALDL 108 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777778888887777777766664443
No 354
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=29.93 E-value=3.2e+02 Score=29.86 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHH
Q 002598 820 QKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK 859 (902)
Q Consensus 820 E~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~ 859 (902)
+..|..|+.+++++++.+.+.+.++..+...-..+.-.++
T Consensus 67 e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~ 106 (256)
T PF14932_consen 67 EEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELS 106 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444333333333
No 355
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.88 E-value=3.1e+02 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.8
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRVLGK 227 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~lqK 227 (902)
...+...+...-+.++.+|.-||.|-+.-+.
T Consensus 37 L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 37 LSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556667777777776655443
No 356
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.85 E-value=6.3e+02 Score=25.97 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHH
Q 002598 113 IHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQS 151 (902)
Q Consensus 113 shLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~ 151 (902)
...+..+.+.-.+|..+|.+-.+.+.+|..+..++-+.+
T Consensus 75 ~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~ 113 (184)
T PRK13455 75 EEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQA 113 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666677777777666666655544443333
No 357
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=29.82 E-value=7.7e+02 Score=26.93 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHH
Q 002598 146 MEFEQSLMILEE 157 (902)
Q Consensus 146 ~Ewek~r~eLE~ 157 (902)
.+++..+..++.
T Consensus 146 ~~~~~a~~~~~~ 157 (334)
T TIGR00998 146 EELDHARKALLS 157 (334)
T ss_pred HHHHHHHHHHHH
Confidence 455555544443
No 358
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.81 E-value=3.6e+02 Score=30.12 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHH-HHHHhhHHHHHHHHHhhHHH--HHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHh
Q 002598 796 KVRQECLVSAIDKSNSLMSQLQESQ-KIVSNSQNELDILKKSKEVI--EDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (902)
Q Consensus 796 ~~le~~l~~~~d~~e~l~~qlqEsE-~~i~~l~seL~slk~s~~~~--E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ 872 (902)
..++..||.+.-..+.+..|+-.++ +.|.-+-++|+.|+=-++.+ ..|+.. ..--+++....+++..+..+..++
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~--~~q~~~~ae~seLq~r~~~l~~~L 237 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDD--EFQQHYVAEKSELQKRLAQLQTEL 237 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988775 57888889998876555443 222221 233344445555555555555555
Q ss_pred hhhHHHhh
Q 002598 873 SSLEVELE 880 (902)
Q Consensus 873 ssLE~ELe 880 (902)
.+|-.||+
T Consensus 238 ~~L~~e~~ 245 (289)
T COG4985 238 DALRAELE 245 (289)
T ss_pred HHHhhhhh
Confidence 55555554
No 359
>PRK11519 tyrosine kinase; Provisional
Probab=29.62 E-value=1.2e+03 Score=29.14 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=14.6
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhhhhhH
Q 002598 104 QRDTGEERLIHLDAALKECMDQLHFVREE 132 (902)
Q Consensus 104 q~~~lEdRvshLD~ALKeCmrQLr~~rEE 132 (902)
...=+++|+..+...|.+..+.|...|.+
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555543
No 360
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.10 E-value=7.2e+02 Score=29.15 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred HhHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHh
Q 002598 47 NDVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQL 126 (902)
Q Consensus 47 ~~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQL 126 (902)
++++.-|+||-+-|.-...==.-.|-|..--|+.|. +++.|-..+.-||+++.++-..-+++...|..-|.|..+-.
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~---~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIR---HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 002598 127 HFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKL 169 (902)
Q Consensus 127 r~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~ 169 (902)
--+-+|.---+.+--..+.+-..-+- .||.|+.++--++..+
T Consensus 179 q~L~~eyQatf~eq~~ml~kRQ~yI~-~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 179 QELNDEYQATFVEQHSMLDKRQAYIG-KLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHH-HHHHHHHHHHHHHHHH
No 361
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=28.77 E-value=4.4e+02 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHhhhhHHHhhhhhhcchHH
Q 002598 870 QKLSSLEVELEDKSNCCEEL 889 (902)
Q Consensus 870 ~K~ssLE~ELe~~k~~ceel 889 (902)
+.+.+|+.||.+.+.-|+..
T Consensus 138 ~~i~slk~EL~d~iKe~e~~ 157 (181)
T PF04645_consen 138 EEIESLKSELNDLIKEREIR 157 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 362
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.44 E-value=2.1e+02 Score=28.81 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 002598 825 NSQNELDILKKSKEVIEDQVKLQKMINE 852 (902)
Q Consensus 825 ~l~seL~slk~s~~~~E~Ql~~~~~~~e 852 (902)
.|..+|.+..++-.+++..+..+...++
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 363
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=28.35 E-value=1.4e+03 Score=29.67 Aligned_cols=83 Identities=28% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHHhhcccchhHHHHhHHH----HHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhH
Q 002598 57 FSALAECNAKDDLVKKHAKM----AQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREE 132 (902)
Q Consensus 57 s~al~~~~~Kd~lVkqhaKv----aeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEE 132 (902)
+.|......=|+||| |.|+ -.++-+-+++|.+-..-+-+.|+.-.+|..+-.+|+-..+++ ++-=|..||.
T Consensus 868 ~~~~~~~~~id~lv~-~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~----~E~ER~rrEa 942 (1259)
T KOG0163|consen 868 SGANSTYRQIDDLVK-KIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQEL----AEAERKRREA 942 (1259)
T ss_pred hhhhhHHHHHHHHHH-HhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhh
Confidence 344444555577775 4565 556666777776666666666665444444444444444433 2333555666
Q ss_pred HHHHHHHHHHHH
Q 002598 133 QEQRIHDAVMKA 144 (902)
Q Consensus 133 qEqki~eav~k~ 144 (902)
.|++-.+...++
T Consensus 943 eek~rre~ee~k 954 (1259)
T KOG0163|consen 943 EEKRRREEEEKK 954 (1259)
T ss_pred hHHHHHHHHHHH
Confidence 666555555543
No 364
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.16 E-value=3.9e+02 Score=23.69 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=42.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 002598 801 CLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (902)
Q Consensus 801 ~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e 852 (902)
++-....++..|..+.....+-|..++.++..+|+--..+-..|.++..+|+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 4444556777888899999999999999999999988888888888888885
No 365
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.12 E-value=5.9e+02 Score=26.10 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=26.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh
Q 002598 170 GVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 170 ~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK 219 (902)
..+...|..-|..+.+.|..|+. ...+..+|+..++.++.+|...+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~~~~ 71 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKK----SAKDNEELKKQIEELQAKNKTAK 71 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556665555 23456677777777777776433
No 366
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.84 E-value=8.1e+02 Score=26.56 Aligned_cols=174 Identities=20% Similarity=0.207 Sum_probs=91.3
Q ss_pred HHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 189 DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLR 268 (902)
Q Consensus 189 eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR 268 (902)
++..++..--..+.....+++.++++...|-.++..+.+....-..--.--...++..+.+=......|..|-...+-+-
T Consensus 28 ~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 28 DLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333444556778888888888888888888876554443333344445555555555556666655555444
Q ss_pred HHHHhcC-----CChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCCCCcchhhhHHHHHHHh----HH
Q 002598 269 VLVRKRL-----PGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPDTPSKRINFLTEQLRAM----EE 339 (902)
Q Consensus 269 ~lvRK~l-----PgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~~~~k~~~~l~erL~~~----Ee 339 (902)
.-+..-- +.+.-|.+|-.|+++.=+ ++|.|.+...... . +.-.+....|..|+..- -.
T Consensus 108 ~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~---emr~r~f~~~~~~--A--------e~El~~A~~LL~~v~~~~~~~~~ 174 (264)
T PF06008_consen 108 EQVESLNENGDQLPSEDLQRALAEAQRMLE---EMRKRDFTPQRQN--A--------EDELKEAEDLLSRVQKWFQKPQQ 174 (264)
T ss_pred HHHHHhCcccCCCCHHHHHHHHHHHHHHHH---HHHhccchhHHHH--H--------HHHHHHHHHHHHHHHHHHhhHHH
Confidence 4443222 234567888888887543 3555532111000 0 00011223344444332 12
Q ss_pred HhH----HHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHH
Q 002598 340 ENN----SLKEVLDKKTNELQFSRTMYARAASKLSEVESQ 375 (902)
Q Consensus 340 Enk----~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~q 375 (902)
+|+ .+++.|+.-++.|+-.|...=++..+..+.+..
T Consensus 175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL 214 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 345555666666666666666555554444433
No 367
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=27.79 E-value=20 Score=42.80 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHH-----------HHhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q 002598 86 KAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECM-----------DQLHFVREEQEQRIHDAVMKASMEFEQSLMI 154 (902)
Q Consensus 86 KAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCm-----------rQLr~~rEEqEqki~eav~k~s~Ewek~r~e 154 (902)
+-|.|+..||..|...-.+...+|.|+--=|.-..+-+ +.||+.++|.+-+|...+..
T Consensus 373 ~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~R----------- 441 (495)
T PF12004_consen 373 KYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISR----------- 441 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhh-----------
Confidence 36678888888887777777777776654444433333 33444444444444443333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 002598 155 LEEKLAETSKRLAKLGVENTHLTKALLAKEKLIED 189 (902)
Q Consensus 155 LE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~e 189 (902)
|.-.+.+ ++.|+..+..+|..|.++|..
T Consensus 442 ----L~~vEeE---Lrre~~~m~~~~~~kqrii~a 469 (495)
T PF12004_consen 442 ----LMAVEEE---LRREHAEMQAVLDHKQRIIDA 469 (495)
T ss_dssp -----------------------------------
T ss_pred ----hhhhhhh---hhhhHHHHhcccccchHHHHH
Confidence 2222223 366677777788888888864
No 368
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.04 E-value=8.3e+02 Score=26.44 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 002598 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELED 881 (902)
Q Consensus 808 ~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~ 881 (902)
...-+...+.+++.....|+.+|.-.+.-..-+-+.-+-...=-..|+.+-..+++.|+.++..|-.|+...+.
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455557888888999999999888776555544433333334459999999999999999999999988764
No 369
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.95 E-value=1.8e+02 Score=32.36 Aligned_cols=46 Identities=33% Similarity=0.388 Sum_probs=34.4
Q ss_pred HhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002598 206 VRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRVLVRKRL 275 (902)
Q Consensus 206 ~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~l 275 (902)
..+..+.+||..||.|+..+.+++..+. ..|++|-+|||.|+.=+.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~------------------------~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILT------------------------QNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhcCcc
Confidence 4667789999999999887755554322 337899999999986654
No 370
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.67 E-value=1.2e+02 Score=35.01 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHH
Q 002598 825 NSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEA 868 (902)
Q Consensus 825 ~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~ 868 (902)
+|.+.++.+.+--+.+|+.+..+..-..+++.+...++..|.++
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444344444444344444433
No 371
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.60 E-value=1.6e+02 Score=28.93 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=29.8
Q ss_pred HhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH
Q 002598 191 GKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 191 ~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE 230 (902)
..+..+.-.++..|+..+..+-.||..|+.|-.-|.+.|.
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455678888899999999999999887777665
No 372
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.59 E-value=5.8e+02 Score=24.46 Aligned_cols=36 Identities=33% Similarity=0.400 Sum_probs=30.4
Q ss_pred HHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHh
Q 002598 203 ALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREF 238 (902)
Q Consensus 203 ~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERel 238 (902)
-|..++..++.+|.+|..|+-.|...|+.-+.|+..
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999887777653
No 373
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.58 E-value=1.4e+03 Score=29.01 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002598 100 AALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGV 171 (902)
Q Consensus 100 ~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~a 171 (902)
..+.|+.+--+++-.||..|.+.-.+|....|- +|+-..- ....|.-+++|=..+.++.-++..+..
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr~kLnatEEm----LQqells-rtsLETqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEM----LQQELLS-RTSLETQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHH----HHHHHHh-hhhHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 344444444555555555555555555443221 1111111 244555566666666666555544443
No 374
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=26.47 E-value=1.2e+03 Score=29.60 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=53.9
Q ss_pred hHhhhHHHHHHHHhhcccchhHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhh
Q 002598 48 DVKNLNDKLFSALAECNAKDDLVKKHAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLH 127 (902)
Q Consensus 48 ~~k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr 127 (902)
.+-.|.-||....-++++= |. ....+++..--++=.|+..+++.......+...+.+++.+.+..=..+|.+|.
T Consensus 35 ~ls~l~~kLql~~qe~~~~---le---~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~ 108 (766)
T PF10191_consen 35 HLSSLVMKLQLYSQEVNAS---LE---ETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLA 108 (766)
T ss_pred HHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 4556666666555555432 11 12233333333444444444444444444444555555556665557777766
Q ss_pred hhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHH
Q 002598 128 FVREEQE--QRIHDAVMKASMEFEQSLMILEEKL 159 (902)
Q Consensus 128 ~~rEEqE--qki~eav~k~s~Ewek~r~eLE~KL 159 (902)
.+..-+. +...++..+ ...|..+-.+++.=+
T Consensus 109 ~ld~vK~rm~~a~~~L~E-A~~w~~l~~~v~~~~ 141 (766)
T PF10191_consen 109 ELDSVKSRMEAARETLQE-ADNWSTLSAEVDDLF 141 (766)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 6544433 334445444 678887666665533
No 375
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.89 E-value=62 Score=31.13 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=34.0
Q ss_pred hhHHH-HHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHH
Q 002598 176 LTKAL-LAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEE 235 (902)
Q Consensus 176 L~~al-~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eE 235 (902)
|+.+| .+=.+|+..-+.+...++.....|..+|..++....+|+.+|..|...++-...+
T Consensus 27 LTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 27 LTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMESE 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 33344 3334566666666666666666667777777777777777666666655443333
No 376
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=25.84 E-value=1.5e+03 Score=29.01 Aligned_cols=277 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhcccchhHHHHhHHHHHHHh------------------hhhhhhhHHHHHHHHHHHHHHHhhhhHhhh
Q 002598 50 KNLNDKLFSALAECNAKDDLVKKHAKMAQEAI------------------TGREKAEAEVVSLKQELDAALQQRDTGEER 111 (902)
Q Consensus 50 k~LneKLs~al~~~~~Kd~lVkqhaKvaeEAV------------------~GwEKAE~E~~~lKkqLe~a~~q~~~lEdR 111 (902)
|+|...|+.|.... .-.+|+.+.|++++ +-|+-|=+-+.+|-..|--+..++-+++.-
T Consensus 376 ktLQ~ELsrAqea~----~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL 451 (739)
T PF07111_consen 376 KTLQAELSRAQEAR----RRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGL 451 (739)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHH
Q ss_pred hhhhhH-----------------HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002598 112 LIHLDA-----------------ALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENT 174 (902)
Q Consensus 112 vshLD~-----------------ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~ 174 (902)
|++=-. .|.-=.+|||.-|+-.--.++-...-+.++...+|-..+..+..+.+.-..+..+
T Consensus 452 ~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~-- 529 (739)
T PF07111_consen 452 MARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQE-- 529 (739)
T ss_pred HHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHH-------------HHHHHHHHHhhhh
Q 002598 175 HLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKE-------------LEIRNEEREFNRR 241 (902)
Q Consensus 175 ~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKE-------------LEIR~eERels~q 241 (902)
+.+-.+..+.+...+......+.....+-.+|+.||..++.+ -..|-.=.++-++
T Consensus 530 ------------Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~r 597 (739)
T PF07111_consen 530 ------------LQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKR 597 (739)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHhhcCCChhhhhccCCCCCCCcccccCCCCCCC
Q 002598 242 TADESHKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEILGRESPETRRKRLNSSPLGSMVDSAFDNPPD 321 (902)
Q Consensus 242 SaeaA~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~lg~d~~e~rrrr~~~~~~~~~~~s~~d~~~~ 321 (902)
- ..|++.|.--|--.-.+| |..+|.|-++. +.|| -+-+
T Consensus 598 L-NeARREHtKaVVsLRQ~q------rqa~reKer~~------------------E~~~-----------------lq~e 635 (739)
T PF07111_consen 598 L-NEARREHTKAVVSLRQIQ------RQAAREKERNQ------------------ELRR-----------------LQEE 635 (739)
T ss_pred H-HHHHHHHHHHHHHHHHHH------HHHHHhhchhH------------------HHHH-----------------HHHH
Q ss_pred CCcchhhhHHHHHHHhHHHhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHhhcccccCCccccccccccccc
Q 002598 322 TPSKRINFLTEQLRAMEEENNSLKEVLDKKTNELQFSRTMYARAASKLSEVESQIEELSKGRKIMEPSRTSIMSYELSLT 401 (902)
Q Consensus 322 ~~~k~~~~l~erL~~~EeEnk~LKe~Lakkn~ELq~sr~m~a~taskLs~~e~ql~~ls~~~~~~e~~~~~~~s~~~s~~ 401 (902)
...+...-|+.||..+|-+++.| +.+.+..++..-..-..++..+.|.+.|++
T Consensus 636 ~~~~e~~rl~~rlqelerdkNl~---------------------------l~rl~~~lps~~~k~~~~~~~~~s~~~~~~ 688 (739)
T PF07111_consen 636 ARKEEGQRLTQRLQELERDKNLM---------------------------LQRLLAVLPSLLEKESSPRPPESSKPASLP 688 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH---------------------------HHHHHHhcCCcccccccCCCCccccCCCCC
Q ss_pred cccCCCCCCCCC
Q 002598 402 SMSDIGSDDKVN 413 (902)
Q Consensus 402 S~sd~g~dd~~s 413 (902)
..+..---..+|
T Consensus 689 ~~~~~r~~~~gs 700 (739)
T PF07111_consen 689 AAFPTRESTKGS 700 (739)
T ss_pred CCCCCccccCCC
No 377
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.58 E-value=1.3e+03 Score=28.23 Aligned_cols=153 Identities=27% Similarity=0.375 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHh-------hhhhhhhhHH
Q 002598 117 AALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR----------LAKL-------GVENTHLTKA 179 (902)
Q Consensus 117 ~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~----------L~~~-------~aEn~~L~~a 179 (902)
=||.|..+-|....-.|+-+|++.--. ..-||.|+.+++-. +.++ -.+.+ +.
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~s--------N~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY---~v 381 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCS--------NLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKY---RV 381 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhc--------cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHh---Hh
Confidence 468888888888888888888775432 12233333333221 1111 11111 12
Q ss_pred HHHHH---HHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhh-hhhhHhHHHHHHHHHH
Q 002598 180 LLAKE---KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFN-RRTADESHKQHLESVK 255 (902)
Q Consensus 180 l~~k~---~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels-~qSaeaA~KQhlEsvK 255 (902)
+.+|. +.+..|.+..+ ..+..|+...+|..+|+.||.-..-.- +|-.||=+. .|--+-.--|-+|+-|
T Consensus 382 iLEKnd~~k~lqnLqe~la-------~tqk~LqEsr~eKetLqlelkK~k~ny-v~LQEry~~eiQqKnksvsqclEmdk 453 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEALA-------NTQKHLQESRNEKETLQLELKKIKANY-VHLQERYMTEIQQKNKSVSQCLEMDK 453 (527)
T ss_pred hhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22221 22333333332 345667777777777777775543332 222233222 1111334458899999
Q ss_pred HHHHHHHHHHHHHHHH---HhcCCChHHHhhhhHHHHh
Q 002598 256 KIAKLESECQRLRVLV---RKRLPGPAALAKMKNEVEI 290 (902)
Q Consensus 256 KIaKLEAECqRLR~lv---RK~lPgpAala~Mk~Eve~ 290 (902)
.+.+=|.|+.||+.+= -|.. +.||.-+|.|-+.
T Consensus 454 ~LskKeeeverLQ~lkgelEkat--~SALdlLkrEKe~ 489 (527)
T PF15066_consen 454 TLSKKEEEVERLQQLKGELEKAT--TSALDLLKREKET 489 (527)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999999987663 2222 3456666666554
No 378
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.55 E-value=4.3e+02 Score=26.83 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhh
Q 002598 171 VENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKENASLK 219 (902)
Q Consensus 171 aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLK 219 (902)
++..-+-..+...+.++.+|..+...-++++..|+.+|+.+.+.|..|-
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334455666778888888888888888899999999888888763
No 379
>PRK12472 hypothetical protein; Provisional
Probab=25.44 E-value=1.3e+03 Score=28.26 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHH
Q 002598 73 HAKMAQEAITGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSL 152 (902)
Q Consensus 73 haKvaeEAV~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r 152 (902)
-++-|.||..-=.++..|+..+++.|..++..+ +.-|..|+...++|-.++-++... +. ++.+
T Consensus 202 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~-------~~a~~~l~~adk~l~~a~~d~~~~---------~a-~~~~ 264 (508)
T PRK12472 202 AARAADEAKTAAAAAAREAAPLKASLRKLERAK-------ARADAELKRADKALAAAKTDEAKA---------RA-EERQ 264 (508)
T ss_pred HHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccchhhh---------hH-HHHH
Confidence 456777777777788888888888877666554 455667777778777775544321 11 1356
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 002598 153 MILEEKLAETSKRLAKLGVENTH 175 (902)
Q Consensus 153 ~eLE~KL~Ea~k~L~~~~aEn~~ 175 (902)
..++.++.++..+|+.+++..++
T Consensus 265 ~~~~~~~~~a~~~~~~a~~~~~~ 287 (508)
T PRK12472 265 QKAAQQAAEAATQLDTAKADAEA 287 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 68888999999988888876554
No 380
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.34 E-value=7.5e+02 Score=25.43 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=56.4
Q ss_pred hhHhHhhhHHHHHHHHhhcccchhHHHHhH-HHHHHHh---------------hhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 002598 45 LENDVKNLNDKLFSALAECNAKDDLVKKHA-KMAQEAI---------------TGREKAEAEVVSLKQELDAALQQRDTG 108 (902)
Q Consensus 45 l~~~~k~LneKLs~al~~~~~Kd~lVkqha-KvaeEAV---------------~GwEKAE~E~~~lKkqLe~a~~q~~~l 108 (902)
...+|-.|+++++.+..-.+.+-.-|-|-- ||+++-| .||- .+|-.+++-+..-..+..+.
T Consensus 20 a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wq---lkvr~a~~dv~nkq~~l~AA 96 (136)
T PF11570_consen 20 ADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQ---LKVRRAQKDVQNKQNKLKAA 96 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999888888877776654 7777555 5897 66666777777777777777
Q ss_pred hhhhhhhh-------HHHHHHHH
Q 002598 109 EERLIHLD-------AALKECMD 124 (902)
Q Consensus 109 EdRvshLD-------~ALKeCmr 124 (902)
+.++..++ .||-..|.
T Consensus 97 ~~~l~~~~~el~~~~~al~~A~e 119 (136)
T PF11570_consen 97 QKELNAADEELNRIQAALSQAME 119 (136)
T ss_dssp HHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH
Confidence 77777777 55655554
No 381
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.29 E-value=5e+02 Score=23.28 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=0.0
Q ss_pred ccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH-----HHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHH
Q 002598 789 INVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQ-----NELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARV 863 (902)
Q Consensus 789 ~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~-----seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~ 863 (902)
+.++..-......++.+-..++.|...+.+....+.+.. .++.....--..++..|..+...-..++.+...++.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhHHHhhhhhhcchHHHHH
Q 002598 864 DLNEACQKLSSLEVELEDKSNCCEELEAT 892 (902)
Q Consensus 864 eln~~~~K~ssLE~ELe~~k~~ceelea~ 892 (902)
.+..+......+|.=.+...........+
T Consensus 81 ~l~~a~~~~k~~e~L~e~~~~~~~~~~~r 109 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKERRREEYQQEEER 109 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 382
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=25.20 E-value=3.6e+02 Score=26.59 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=25.7
Q ss_pred hcccchhHHHHhHHHHHH-----HhhhhhhhhHHHHH---HHHHHHHHHHhhhhHhhhhhhhhHHHHHHH
Q 002598 62 ECNAKDDLVKKHAKMAQE-----AITGREKAEAEVVS---LKQELDAALQQRDTGEERLIHLDAALKECM 123 (902)
Q Consensus 62 ~~~~Kd~lVkqhaKvaeE-----AV~GwEKAE~E~~~---lKkqLe~a~~q~~~lEdRvshLD~ALKeCm 123 (902)
.|-+|..-|.++...|.. =|+|.++|=.+|.+ .-..+.+.++++...+.+|.+-+.-|++.+
T Consensus 21 gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~ 90 (115)
T PF06476_consen 21 GCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQ 90 (115)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444432 24555555555432 122333334444444444444444444333
No 383
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=25.08 E-value=5.4e+02 Score=25.89 Aligned_cols=76 Identities=24% Similarity=0.240 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhhHH-HHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHh
Q 002598 824 SNSQNELDILKKSKEV-IEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (902)
Q Consensus 824 ~~l~seL~slk~s~~~-~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~Q 899 (902)
++|+.++...+..+.. .+.+++.....+.+|.+....++++++.+.....+....++....--.++.+.+..|...
T Consensus 1 ~~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E 77 (136)
T PF04871_consen 1 AELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE 77 (136)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=25.03 E-value=3.6e+02 Score=30.16 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=41.4
Q ss_pred ccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 002598 787 EFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDI 832 (902)
Q Consensus 787 e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~s 832 (902)
.+..|-.+-.+++....+-.++++-.-.|.+|.|+.+.+|+.+++.
T Consensus 114 kI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 114 KISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666777888888999999999999999999999999999999987
No 385
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.99 E-value=4.4e+02 Score=30.72 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhh-HHHHHHHHHHHHhhHhHhHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK-EVIEDQVKLQKMINEDLDTQLKVARV 863 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~-~~~E~Ql~~~~~~~e~Ldt~~~~~e~ 863 (902)
+.+..++...-.++..++...-.+...++.|+.+.++.|..-=.++...-... ..++.|..-.......+..+ -.
T Consensus 291 r~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~----~~ 366 (458)
T COG3206 291 RQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGR----LS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----Hh
Q ss_pred HHHHHHHHhhhhHHHhhhhhhcchHHHHHHHHHHHh
Q 002598 864 DLNEACQKLSSLEVELEDKSNCCEELEATCLELQLQ 899 (902)
Q Consensus 864 eln~~~~K~ssLE~ELe~~k~~ceelea~C~ELq~Q 899 (902)
.++...+++..|+-+++-.++.-+.++.+..++..|
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 386
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.96 E-value=5.3e+02 Score=23.45 Aligned_cols=10 Identities=40% Similarity=0.358 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002598 889 LEATCLELQL 898 (902)
Q Consensus 889 lea~C~ELq~ 898 (902)
+..+..+++.
T Consensus 88 l~~~l~~~~~ 97 (106)
T PF01920_consen 88 LEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 387
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.94 E-value=5.9e+02 Score=23.99 Aligned_cols=43 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHHHh
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTEKE 214 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~EKE 214 (902)
-.+.+..|+..|...+.--..+|..|.+ .+.+ +..+|..+|||
T Consensus 53 ~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~---~~~~l~~~Eke 95 (96)
T PF08647_consen 53 SKDALDNEMKKLNTQLSKSSELIEQLKE----TEKE---FVRKLKNLEKE 95 (96)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHH---HHHHHHHhhcc
Confidence 3444555555555444433344444444 3333 34666666654
No 388
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.77 E-value=1.1e+03 Score=27.05 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHhhhhhhhhhHHHHHHHHHHHHHHhhh
Q 002598 145 SMEFEQSLMILEEKLAETSK--RLAKLGVENTHLTKALLAKEKLIEDLGKQR 194 (902)
Q Consensus 145 s~Ewek~r~eLE~KL~Ea~k--~L~~~~aEn~~L~~al~~k~~~i~eL~e~k 194 (902)
+-+|+..|.-+=.|+.|+.+ +|+.--.+.-++---+..|+-++.+.....
T Consensus 45 ~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~a 96 (338)
T KOG3647|consen 45 EDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSA 96 (338)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666544 333222232222223344555555444433
No 389
>smart00338 BRLZ basic region leucin zipper.
Probab=24.75 E-value=2.3e+02 Score=24.41 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHHHHHhhhhHHHhhHhhhHHHHHHHHHHHH
Q 002598 201 SNALMVRLDSTEKENASLKYEVRVLGKELEI 231 (902)
Q Consensus 201 ~~~L~~rLes~EKEN~sLKyEl~~lqKELEI 231 (902)
+..|..+++.++.+|..|+.++..+..++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777776666666443
No 390
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=24.48 E-value=7.8e+02 Score=29.45 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=62.6
Q ss_pred hhHHHHhHHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 002598 67 DDLVKKHAKMAQEAI----TGREKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVM 142 (902)
Q Consensus 67 d~lVkqhaKvaeEAV----~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~ 142 (902)
.+|-. ++-+++=|+ .-|+.|.++. .-||.-..+.....+..+.+|+.||+...-.|.-+.-..+.|-+--.+
T Consensus 263 n~lr~-Q~~~ve~af~~ri~etqdar~kL---~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnv 338 (421)
T KOG2685|consen 263 NDLRT-QADAVELAFKKRIRETQDARNKL---EWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNV 338 (421)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCch
Confidence 34444 444556564 5788888774 457777778888889999999999999888777776666644332222
Q ss_pred H------------HhhHHHHHHHHHHHHHHHHHHHHH
Q 002598 143 K------------ASMEFEQSLMILEEKLAETSKRLA 167 (902)
Q Consensus 143 k------------~s~Ewek~r~eLE~KL~Ea~k~L~ 167 (902)
+ -=.+.+....-|+.||.+++.-|.
T Consensus 339 ELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~ 375 (421)
T KOG2685|consen 339 ELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLK 375 (421)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223344455566666666655443
No 391
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=7.3e+02 Score=24.93 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH----------------------HHHHHHHHhhHHHHHHHHHHHHhhHhH
Q 002598 797 VRQECLVSAIDKSNSLMSQLQESQKIVSNSQ----------------------NELDILKKSKEVIEDQVKLQKMINEDL 854 (902)
Q Consensus 797 ~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~----------------------seL~slk~s~~~~E~Ql~~~~~~~e~L 854 (902)
.|...|+...-....+..+|.|.+.-+.+|. .=.+-|++....+|.+|+.-.---++|
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002598 855 DTQLKVARVDLNEACQK 871 (902)
Q Consensus 855 dt~~~~~e~eln~~~~K 871 (902)
.+++..++++|..++..
T Consensus 97 ~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 97 QERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHhhc
No 392
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.36 E-value=1.6e+03 Score=28.90 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH
Q 002598 243 ADESHKQHLESVKKIAKLESECQR 266 (902)
Q Consensus 243 aeaA~KQhlEsvKKIaKLEAECqR 266 (902)
|.+...--.++-.||..||.+.++
T Consensus 683 aka~~~pd~~~k~kieal~~qik~ 706 (762)
T PLN03229 683 AKASKTPDVTEKEKIEALEQQIKQ 706 (762)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHH
Confidence 344444445555688888887653
No 393
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=24.32 E-value=1.4e+03 Score=28.02 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCChHHHhhhhHHHH
Q 002598 222 VRVLGKELEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRL----RVLVRKRLPGPAALAKMKNEVE 289 (902)
Q Consensus 222 l~~lqKELEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRL----R~lvRK~lPgpAala~Mk~Eve 289 (902)
.+..++|+|-..-|++|+.--...+.-|.--.-..|.-+||--+-| +.-.|.++|-.|.+-.|+.+.+
T Consensus 304 stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~ 375 (554)
T KOG4677|consen 304 STASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLT 375 (554)
T ss_pred chhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHH
Confidence 5566777777777787775444444445545555666677766544 5566778888888888876654
No 394
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=24.31 E-value=2e+03 Score=29.88 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=91.0
Q ss_pred HhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 002598 108 GEERLIHLDAALKECMDQLHFVREEQEQRIHDA---VMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKE 184 (902)
Q Consensus 108 lEdRvshLD~ALKeCmrQLr~~rEEqEqki~ea---v~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~ 184 (902)
+..++.+|++-.+.|+.|+...+..=..--.++ .-+.-..++..-.+++.++.+.+.++-.+..+-..|+ +.|.
T Consensus 266 ~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~---~~k~ 342 (1294)
T KOG0962|consen 266 LLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLI---QLKT 342 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 345677777777777777776665322000000 1111122333333445555555554444443332222 2333
Q ss_pred HHHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHH---HHHHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHH
Q 002598 185 KLIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLG---KELEIRNEEREFNRRTADESHKQHLESVKKIAKLE 261 (902)
Q Consensus 185 ~~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lq---KELEIR~eERels~qSaeaA~KQhlEsvKKIaKLE 261 (902)
+...+..+- ++++++..+-.+.-..-.++-+++|.+.... ...+++-...++..-=-..-..--...+|.++.++
T Consensus 343 ~~~~~~~~l--q~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~ 420 (1294)
T KOG0962|consen 343 ELDLEQSEL--QAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELE 420 (1294)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333332222 2223333323333333344445555544322 22444444444443333444445566778889999
Q ss_pred HHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 002598 262 SECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (902)
Q Consensus 262 AECqRLR~lvRK~lPgpAala~Mk~Eve~ 290 (902)
....+++.-++++--+--+.-+|+.+..+
T Consensus 421 s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (1294)
T KOG0962|consen 421 TNALDLIKEITDREVSLEAQKRIKDEIKK 449 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777778776665
No 395
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.22 E-value=1.4e+03 Score=29.17 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhh
Q 002598 93 SLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVRE 131 (902)
Q Consensus 93 ~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rE 131 (902)
.+-..|+....+...++.+...++..+++..+..+.+.+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666676666666666665555444433
No 396
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=24.06 E-value=5.8e+02 Score=28.71 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 002598 860 VARVDLNEACQKLSSLEVEL 879 (902)
Q Consensus 860 ~~e~eln~~~~K~ssLE~EL 879 (902)
.+++++..+...+..++..|
T Consensus 155 ~~~~~~~~~~~~l~~~~~~l 174 (370)
T PRK11578 155 VKQAQIGTIDAQIKRNQASL 174 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 397
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.05 E-value=4.8e+02 Score=31.57 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHH
Q 002598 91 VVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQ 150 (902)
Q Consensus 91 ~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek 150 (902)
+..++++|..+..+|..| ++--++|+.-..-=.++|+.++.....+..+
T Consensus 68 ~k~~r~~~~~l~~~N~~l-----------~~eN~~L~~r~~~id~~i~~av~~~~~~~~~ 116 (472)
T TIGR03752 68 VKELRKRLAKLISENEAL-----------KAENERLQKREQSIDQQIQQAVQSETQELTK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH
Confidence 445666777777777433 3333444444444456777776654443333
No 398
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=23.71 E-value=6.5e+02 Score=24.03 Aligned_cols=89 Identities=20% Similarity=0.137 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------------HHHHHHHHHHHHhhHhHhHHHHH
Q 002598 794 GNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILKKSK-------------EVIEDQVKLQKMINEDLDTQLKV 860 (902)
Q Consensus 794 ~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~-------------~~~E~Ql~~~~~~~e~Ldt~~~~ 860 (902)
..+.....|+.+....+....+|....+.+.+...++......+ ..+.+.|..+..--..+..++..
T Consensus 14 ~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~ 93 (141)
T TIGR02473 14 EEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEA 93 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777877777777788887777777766665433332 34455555555545555555556
Q ss_pred HHHHHHHHHHHhhhhHHHhhhh
Q 002598 861 ARVDLNEACQKLSSLEVELEDK 882 (902)
Q Consensus 861 ~e~eln~~~~K~ssLE~ELe~~ 882 (902)
.+..+-++..+..++|.=.+..
T Consensus 94 ~r~~l~~a~~~~k~lekL~ek~ 115 (141)
T TIGR02473 94 KRERLLEARRELKALEKLKEKK 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666544443
No 399
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=23.44 E-value=9.5e+02 Score=26.27 Aligned_cols=48 Identities=33% Similarity=0.280 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002598 118 ALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRL 166 (902)
Q Consensus 118 ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L 166 (902)
+|++.++.|..+++-++++++..-.-++. ....-..|+.+..++...+
T Consensus 72 ~Le~el~~l~~~~~~~~~~~~~lq~~~~~-~~~~~~~l~~~~~~~~~~l 119 (256)
T PF14932_consen 72 ALEEELEALQEYKELYEQLRNKLQQLDSS-LSQELSELEGKEEEAQKKL 119 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 44455555555555555444433322111 1112234555554444443
No 400
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.44 E-value=7.5e+02 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002598 128 FVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKR 165 (902)
Q Consensus 128 ~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~ 165 (902)
.++.+-++.+.+|-.....+.++.+.+|+.....+...
T Consensus 85 ~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~ 122 (141)
T PRK08476 85 KAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQ 122 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555444333
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.43 E-value=1.3e+03 Score=29.29 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.2
Q ss_pred hhHHHHHHH
Q 002598 552 YKILEDVRD 560 (902)
Q Consensus 552 d~ILedIr~ 560 (902)
++-++.+..
T Consensus 704 ~eA~~~l~~ 712 (771)
T TIGR01069 704 EEALDRLEK 712 (771)
T ss_pred HHHHHHHHH
Confidence 333333333
No 402
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.36 E-value=2.7e+02 Score=23.93 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=25.6
Q ss_pred hcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHH
Q 002598 199 ADSNALMVRLDSTEKENASLKYEVRVLGKELEIR 232 (902)
Q Consensus 199 ~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR 232 (902)
..+..|..++..++.+|..|+-++..+.+++.-.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888877775543
No 403
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=23.28 E-value=6.3e+02 Score=23.78 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASLKYEVR 223 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~ 223 (902)
.+..|.-+++.++.+..+++-..+++.-|+..|+.-+.
T Consensus 32 k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 32 KKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555666777777777777777766666665443
No 404
>smart00338 BRLZ basic region leucin zipper.
Probab=23.21 E-value=1.8e+02 Score=25.03 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=17.3
Q ss_pred hhhhcHHHHHHhhhhHHHhhHhhhHHH
Q 002598 196 QAEADSNALMVRLDSTEKENASLKYEV 222 (902)
Q Consensus 196 ~ae~e~~~L~~rLes~EKEN~sLKyEl 222 (902)
..+.+...|..+++.++.++..|+.++
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334556677777777777777665
No 405
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=23.17 E-value=1.2e+03 Score=27.14 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=9.2
Q ss_pred hhhhhhhhHHHHHHHHHhhhhh
Q 002598 109 EERLIHLDAALKECMDQLHFVR 130 (902)
Q Consensus 109 EdRvshLD~ALKeCmrQLr~~r 130 (902)
+.++..+...|.+...+|+..|
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 406
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.14 E-value=3.5e+02 Score=29.75 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHH
Q 002598 811 SLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLK 859 (902)
Q Consensus 811 ~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~ 859 (902)
.+.+||+..++.|..||-+++.+ +--++.-.+.++.+|-|||.++.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~---~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQEN---QYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666544 33455556678889999998764
No 407
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.10 E-value=5.5e+02 Score=26.49 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH-HHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHH
Q 002598 805 AIDKSNSLMSQLQESQKIVSNSQNELDILKKSKEVI-EDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVE 878 (902)
Q Consensus 805 ~~d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~-E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~E 878 (902)
|+..+=.+-.++-..+..+..++.+.++..+..... +...+....-.+.|..++..++.++..+..+.+.|+.|
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666677777777777777766555444332 22223333334445555555566666666666655544
No 408
>PF14772 NYD-SP28: Sperm tail
Probab=22.84 E-value=6.4e+02 Score=23.68 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHH
Q 002598 132 EQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSN 202 (902)
Q Consensus 132 EqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~ 202 (902)
+..........+++..|..+.. ..+..++...|...+.- ....|..|+++|.+|..++..++..+.
T Consensus 28 ~E~~~s~~~~~~I~~~W~~i~~--~~~~~eL~~~ie~q~~~---~e~ii~~Kd~lI~~L~~eL~~~deqy~ 93 (104)
T PF14772_consen 28 EEEKESRANFEKINERWREILR--KKKPQELRKEIEEQKQA---CERIIDRKDALIKELQQELKEADEQYV 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566778899988753 25666776666655543 345788999999999998887766553
No 409
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.80 E-value=6.4e+02 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=19.2
Q ss_pred hhhcHHHHHHhhhhHHHhhHhhhHHHHH
Q 002598 197 AEADSNALMVRLDSTEKENASLKYEVRV 224 (902)
Q Consensus 197 ae~e~~~L~~rLes~EKEN~sLKyEl~~ 224 (902)
..++...|+.|+..++-+..+|+.|++-
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4455567777777777777777777654
No 410
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.74 E-value=1.4e+03 Score=29.14 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002598 146 MEFEQSLMILEEKLAET 162 (902)
Q Consensus 146 ~Ewek~r~eLE~KL~Ea 162 (902)
.+.++.+.+||.++.++
T Consensus 539 ~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 539 KEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444443333
No 411
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.54 E-value=3.8e+02 Score=28.70 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=13.8
Q ss_pred cHHHHHHhhhhHHHhhHhhhHHHHHHHHH
Q 002598 200 DSNALMVRLDSTEKENASLKYEVRVLGKE 228 (902)
Q Consensus 200 e~~~L~~rLes~EKEN~sLKyEl~~lqKE 228 (902)
++..|+.+++++.+.+++.-.|+.+|+.-
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555555544454444443
No 412
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=3.5e+02 Score=31.56 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHh
Q 002598 819 SQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKL 872 (902)
Q Consensus 819 sE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ 872 (902)
+++.+..+.++++++|....-+-.....+..+.+.||+|+..+++.+.-+..|.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355677788888888888888888888888888888888887776666665554
No 413
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.40 E-value=9.3e+02 Score=25.38 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHhhhhhhh-----hHHHHHHHHHhh
Q 002598 88 EAEVVSLKQELDAALQQRDTGEERLIHL-----DAALKECMDQLH 127 (902)
Q Consensus 88 E~E~~~lKkqLe~a~~q~~~lEdRvshL-----D~ALKeCmrQLr 127 (902)
..+|..|...|+..+++.-+=+.-++.. .-.+.|-.||+-
T Consensus 32 R~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888777765544333332 224455555543
No 414
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.33 E-value=5.7e+02 Score=23.86 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhH
Q 002598 158 KLAETSKRLAKLGVENTHLTK 178 (902)
Q Consensus 158 KL~Ea~k~L~~~~aEn~~L~~ 178 (902)
+...+..+++.++++...+++
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk 57 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSK 57 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 333444445555555544443
No 415
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=22.32 E-value=8.9e+02 Score=27.97 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 229 LEIRNEEREFNRRTADESHKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 229 LEIR~eERels~qSaeaA~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
--|+..||+|=.---..=.+-|.|+..+...|||=.||+|+
T Consensus 49 ~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~ 89 (324)
T PF12126_consen 49 AHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRT 89 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 44666677765222112234567777888899999999995
No 416
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.26 E-value=1.8e+03 Score=28.79 Aligned_cols=44 Identities=32% Similarity=0.345 Sum_probs=31.2
Q ss_pred HHhHHHHHHHh-------hhhhhhhHHHHHHHHHHHHHHHhhhhHhhhhhh
Q 002598 71 KKHAKMAQEAI-------TGREKAEAEVVSLKQELDAALQQRDTGEERLIH 114 (902)
Q Consensus 71 kqhaKvaeEAV-------~GwEKAE~E~~~lKkqLe~a~~q~~~lEdRvsh 114 (902)
..+.-|+++|- +--|.+|-||.++|-||.+++|-.-+-+-|.-.
T Consensus 365 EEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQ 415 (1480)
T COG3096 365 EEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQ 415 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455566554 567788999999999999999866555555433
No 417
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=22.20 E-value=9.8e+02 Score=25.59 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=83.7
Q ss_pred hHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 002598 107 TGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQ-SLMILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185 (902)
Q Consensus 107 ~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek-~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~ 185 (902)
....+...+...+...-.+++.++.+-...-.. .......+.. --.+||.+|......|..+.. .|..-..
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~-------~l~~~~~ 106 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANLSLEELEQRLSQEQAQLQELQE-------QLQQENS 106 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 444555666666666666666665544332222 0000111111 123666677666666554433 2333344
Q ss_pred HHHHHHhhhhhhhhcHHHHHHhhhhHHHhhHhh---------hHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHH
Q 002598 186 LIEDLGKQRTQAEADSNALMVRLDSTEKENASL---------KYEVRVLGKELEIRNEEREFNRRTADESHKQHLESVKK 256 (902)
Q Consensus 186 ~i~eL~e~ks~ae~e~~~L~~rLes~EKEN~sL---------KyEl~~lqKELEIR~eERels~qSaeaA~KQhlEsvKK 256 (902)
.+..+...-.++-..+.....+++.+......+ ....-.++-++..+.-+-+|-.+.-..+....-=.-.+
T Consensus 107 ~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~q 186 (240)
T PF12795_consen 107 QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQ 186 (240)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 555666666666677777777777777765543 33334444555555555555555544555555445555
Q ss_pred HHHHHHHHHHHHHHHH
Q 002598 257 IAKLESECQRLRVLVR 272 (902)
Q Consensus 257 IaKLEAECqRLR~lvR 272 (902)
+.-+-...+++...++
T Consensus 187 rdl~~~~~~~l~~~l~ 202 (240)
T PF12795_consen 187 RDLLKARIQRLQQQLQ 202 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666553
No 418
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.14 E-value=1.4e+03 Score=27.47 Aligned_cols=127 Identities=21% Similarity=0.217 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHH
Q 002598 91 VVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFE----QSLMILEEKLAETSKRL 166 (902)
Q Consensus 91 ~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewe----k~r~eLE~KL~Ea~k~L 166 (902)
+..+....-.....+..+..+..++...|..--.+.+ +|.+-+++...+.+.+++ +++.+...++.++++.
T Consensus 54 ~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~----eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~- 128 (448)
T COG1322 54 AEQLRTFARSLQALNLELIQELNELKARLQQQLLQSR----EQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQ- 128 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Confidence 3344444555555555555666666655554443333 333555555555555544 3444445555555431
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHhhhh----hhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHH
Q 002598 167 AKLGVENTHLTKALLAKEKLIEDLGKQRT----QAEADSNALMVRLDSTEKENASLKYEVRVLGKELE 230 (902)
Q Consensus 167 ~~~~aEn~~L~~al~~k~~~i~eL~e~ks----~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKELE 230 (902)
+. -..+.-+-..+..+++... ..-.+...+...+..+.-++..|-.|+..+++.|.
T Consensus 129 ------~~--~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk 188 (448)
T COG1322 129 ------NL--KQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALK 188 (448)
T ss_pred ------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 1111111112222222222 22233444555566666666666666666666553
No 419
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=22.13 E-value=4.5e+02 Score=32.23 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred hhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 002598 106 DTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSKRLAKLGVENTHLTKALLAKEK 185 (902)
Q Consensus 106 ~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~k~~ 185 (902)
.++-.|..-|=..++.+-.+|+.+|..=-..|...|.+.. .|=.||+++++++.++..=-..-.-.|..|+.
T Consensus 134 ~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vN--------sLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~ 205 (552)
T COG1256 134 QAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVN--------SLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQ 205 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 3555677777789999999999999988888888888754 77788999999888875444445567888888
Q ss_pred HHHHHHhhhh
Q 002598 186 LIEDLGKQRT 195 (902)
Q Consensus 186 ~i~eL~e~ks 195 (902)
++.+|+.-..
T Consensus 206 Lv~eLs~~i~ 215 (552)
T COG1256 206 LVDELSQLIG 215 (552)
T ss_pred HHHHHHhhcc
Confidence 8888887665
No 420
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=22.11 E-value=5e+02 Score=27.76 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002598 113 IHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETS 163 (902)
Q Consensus 113 shLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~ 163 (902)
-++...+++.|.+...++.+.++.+.++-..+...-..++.+.+..+.+++
T Consensus 145 i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Ae 195 (261)
T TIGR01933 145 ARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEAR 195 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999888888888887888877665555566666665555444
No 421
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.06 E-value=1.6e+03 Score=27.92 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred hhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHHHHHHHHHHhhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002598 198 EADSNALMVRLDSTEKENASLKYEVRVLGKELEIRNEEREFNRRTA---DESHKQHLESVKKIAKLESECQRLRV 269 (902)
Q Consensus 198 e~e~~~L~~rLes~EKEN~sLKyEl~~lqKELEIR~eERels~qSa---eaA~KQhlEsvKKIaKLEAECqRLR~ 269 (902)
--+...|++.|-.++|+...++.|...+-.- +...++-.++-- +--..+.+|...-.+.=|.|.+-||.
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~---Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEH---LQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344456666666666666655554443322 222222221110 11124567778888888899998874
No 422
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.90 E-value=2.4e+02 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 002598 816 LQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (902)
Q Consensus 816 lqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e 852 (902)
+.|.|+.+..+.+.+.+++..+..+-+.++....--+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777777766554443
No 423
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=21.78 E-value=8.9e+02 Score=24.91 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhc
Q 002598 163 SKRLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEAD 200 (902)
Q Consensus 163 ~k~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e 200 (902)
+++|+.+.+|..+|-.+|..|....+-|+-.-..-+++
T Consensus 40 ~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~e 77 (134)
T PF15233_consen 40 QRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESE 77 (134)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999988888877666555433333
No 424
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=21.75 E-value=1.1e+03 Score=26.15 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 002598 146 MEFEQSLMIL 155 (902)
Q Consensus 146 ~Ewek~r~eL 155 (902)
.+++..+..+
T Consensus 152 ~~~~~a~~~~ 161 (346)
T PRK10476 152 QQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 425
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.66 E-value=1.7e+03 Score=28.22 Aligned_cols=69 Identities=22% Similarity=0.154 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHhhhhhhhhcHHHHHHhhhhHHHhhHhhhHHHHHHHHHH
Q 002598 161 ETSKRLAKLGVENTHLTKALLAKEKLIE-------DLGKQRTQAEADSNALMVRLDSTEKENASLKYEVRVLGKEL 229 (902)
Q Consensus 161 Ea~k~L~~~~aEn~~L~~al~~k~~~i~-------eL~e~ks~ae~e~~~L~~rLes~EKEN~sLKyEl~~lqKEL 229 (902)
.+.+.++.+.+|.++|+.+|-.+..... -|.++.......++.|+.+.+.--+|...+..+++.+..+|
T Consensus 65 ~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 65 RLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445555555555544433322 35556666666666666666666666666666666666653
No 426
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.57 E-value=3.6e+02 Score=30.58 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHHhhhhHHHhhhhh
Q 002598 808 KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQKLSSLEVELEDKS 883 (902)
Q Consensus 808 ~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K~ssLE~ELe~~k 883 (902)
+.+.+..++++-...|..|...++.++..++.+-+.....+.+.+.|+-......+.-+.++.|+.+||.+.+.-.
T Consensus 34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~ 109 (297)
T KOG0810|consen 34 NLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADE 109 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888888888888888889999999999999999999999999999999999999999999998876554
No 427
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.52 E-value=9.9e+02 Score=25.39 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHhhhhhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002598 85 EKAEAEVVSLKQELDAALQQRDTGEERLIHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAETSK 164 (902)
Q Consensus 85 EKAE~E~~~lKkqLe~a~~q~~~lEdRvshLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea~k 164 (902)
...+..+...|+.|..+......++.++..+.....+-.++-..+-..-+.-+..........++..-..|+..+..+..
T Consensus 34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~ 113 (219)
T TIGR02977 34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE 113 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhcHHHHHHhhhhHH
Q 002598 165 RLAKLGVENTHLTKALLAKEKLIEDLGKQRTQAEADSNALMVRLDSTE 212 (902)
Q Consensus 165 ~L~~~~aEn~~L~~al~~k~~~i~eL~e~ks~ae~e~~~L~~rLes~E 212 (902)
.++++... +.+|+..+..+.+.-..|.+|.....
T Consensus 114 ~v~~l~~~--------------l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 114 TLAKLQED--------------IAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.42 E-value=5.5e+02 Score=26.67 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhHhHhHHHHHHHHHHHHHHHH
Q 002598 818 ESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINEDLDTQLKVARVDLNEACQK 871 (902)
Q Consensus 818 EsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e~Ldt~~~~~e~eln~~~~K 871 (902)
..++....|.++++.|+.-++.++..+++...-...|+.+-..+..+.+.+..+
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 344555677788888888888888777776554444555555455555555543
No 429
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.30 E-value=89 Score=34.45 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002598 249 QHLESVKKIAKLESECQRLRVLV 271 (902)
Q Consensus 249 QhlEsvKKIaKLEAECqRLR~lv 271 (902)
=..+.++||+.||.|..+||+.+
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQI 138 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQI 138 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999987
No 430
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.26 E-value=2.5e+02 Score=26.27 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 002598 148 FEQSLMILEEKLAETSKRLAKLGVENTHLTKALLA 182 (902)
Q Consensus 148 wek~r~eLE~KL~Ea~k~L~~~~aEn~~L~~al~~ 182 (902)
....|..||..+..++++|..=.+=+.+|-++|.-
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~ 40 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGR 40 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567899999999999998777777777777654
No 431
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.20 E-value=9.2e+02 Score=24.86 Aligned_cols=31 Identities=10% Similarity=0.032 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002598 114 HLDAALKECMDQLHFVREEQEQRIHDAVMKA 144 (902)
Q Consensus 114 hLD~ALKeCmrQLr~~rEEqEqki~eav~k~ 144 (902)
..+..+.+--.+|..++.+..+.+.+|....
T Consensus 73 eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~a 103 (184)
T CHL00019 73 EAIEKLEKARARLRQAELEADEIRVNGYSEI 103 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666555555543
No 432
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.16 E-value=1.1e+03 Score=25.76 Aligned_cols=29 Identities=3% Similarity=0.166 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHhhcccchhHHHHhHHHHH
Q 002598 50 KNLNDKLFSALAECNAKDDLVKKHAKMAQ 78 (902)
Q Consensus 50 k~LneKLs~al~~~~~Kd~lVkqhaKvae 78 (902)
+-++-.++.++-.+-....+|-||.-=++
T Consensus 9 ~~~~a~~~~~~dk~EDp~~~l~Q~ird~~ 37 (225)
T COG1842 9 DLVKANINELLDKAEDPEKMLEQAIRDME 37 (225)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33444444555555445566666654333
No 433
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.00 E-value=3.5e+02 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 002598 807 DKSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQV 844 (902)
Q Consensus 807 d~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql 844 (902)
.++..+..++.+..+.+..|+.+++.++.+...+|...
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555555555555555555555555555554443
No 434
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.98 E-value=1.2e+03 Score=26.32 Aligned_cols=41 Identities=34% Similarity=0.304 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhhHHHHh
Q 002598 247 HKQHLESVKKIAKLESECQRLRVLVRKRLPGPAALAKMKNEVEI 290 (902)
Q Consensus 247 ~KQhlEsvKKIaKLEAECqRLR~lvRK~lPgpAala~Mk~Eve~ 290 (902)
.+..-.+.|+|-+||-|+.-|+.-.=+ ..+||..|-.|...
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~---~n~~l~~m~eer~~ 283 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEK---SNKALIEMAEERQK 283 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHH
Confidence 355567889999999999999987655 45778888777665
No 435
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.55 E-value=8.8e+02 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002598 115 LDAALKECMDQLHFVREEQEQRIHDAVMK 143 (902)
Q Consensus 115 LD~ALKeCmrQLr~~rEEqEqki~eav~k 143 (902)
.+..+.+.-++|..+|.+-.+.+..+...
T Consensus 72 a~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 72 ANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666555555555444
No 436
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=20.53 E-value=5.1e+02 Score=33.04 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=51.1
Q ss_pred hhHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 002598 796 KVRQECLVSAID-KSNSLMSQLQESQKIVSNSQNELDILKKSKEVIEDQVKLQKMINE 852 (902)
Q Consensus 796 ~~le~~l~~~~d-~~e~l~~qlqEsE~~i~~l~seL~slk~s~~~~E~Ql~~~~~~~e 852 (902)
-=+.++|.+.|. +.+.+..++.+.++.|..|+.=|..-++-+..+-.+++..+.-|-
T Consensus 415 ~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 415 AILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhC
Confidence 457899999997 899999999999999999999999999999999999988877776
No 437
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.42 E-value=6.8e+02 Score=28.13 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 002598 859 KVARVDLNEACQKLSSLE 876 (902)
Q Consensus 859 ~~~e~eln~~~~K~ssLE 876 (902)
..+++.++.+...+..+.
T Consensus 161 ~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 161 GTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443333333
No 438
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=20.32 E-value=7.1e+02 Score=25.20 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=28.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002598 125 QLHFVREEQEQRIHDAVMKASMEFEQSLMILEEKLAET 162 (902)
Q Consensus 125 QLr~~rEEqEqki~eav~k~s~Ewek~r~eLE~KL~Ea 162 (902)
++..+++.-..+..++-......|+++..-++..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~a 99 (132)
T PF05597_consen 62 QVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARA 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444466667777888888899999888888888777
No 439
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=20.31 E-value=7.5e+02 Score=26.89 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=42.5
Q ss_pred CcccccccchhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002598 785 GSEFINVEAGNKVRQECLVSAIDKSNSLMSQLQESQKIVSNSQNELDILK 834 (902)
Q Consensus 785 ~~e~~~~~s~K~~le~~l~~~~d~~e~l~~qlqEsE~~i~~l~seL~slk 834 (902)
+++..-+--++.++...+.+|+++.+..+.++-|.+.-+.+-++-|.+-+
T Consensus 21 k~~~~~la~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR 70 (228)
T PF06721_consen 21 KSEHATLAYQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRR 70 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666678899999999999999999999999999999888887743
No 440
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=20.22 E-value=3.5e+02 Score=28.82 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.3
Q ss_pred HhhhhHHHhhHhhhHHHHHHHHHHHHHH-HHHHhhhh
Q 002598 206 VRLDSTEKENASLKYEVRVLGKELEIRN-EEREFNRR 241 (902)
Q Consensus 206 ~rLes~EKEN~sLKyEl~~lqKELEIR~-eERels~q 241 (902)
++|+.+-.++..|+|+|..-+.-||-++ +||.||.|
T Consensus 130 ~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSR 166 (179)
T PF13942_consen 130 SELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSR 166 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 6788899999999999999999999876 79998843
No 441
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.19 E-value=9.2e+02 Score=24.50 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHHH
Q 002598 113 IHLDAALKECMDQLHFVREEQEQRIHDAVMKASMEFE 149 (902)
Q Consensus 113 shLD~ALKeCmrQLr~~rEEqEqki~eav~k~s~Ewe 149 (902)
...+..+.+.-.+|..++.+-...+.++.....++.+
T Consensus 58 ~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~ 94 (167)
T PRK14475 58 EEAQALLADVKAEREEAERQAAAMLAAAKADARRMEA 94 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666555555443333
Done!