Query 002598
Match_columns 902
No_of_seqs 111 out of 113
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 17:15:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002598.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1314-1318//hhsearch_scop/002598hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8yf1 a.24.13.1 (F:3-86) Sig 16.6 17 0.0012 10.9 1.5 36 530-565 2-37 (84)
2 d1ls1a1 a.24.13.1 (A:1-88) Sig 12.7 21 0.0015 10.1 0.9 35 531-565 7-41 (88)
3 d1ufza_ a.5.9.1 (A:) HBS1-like 8.9 33 0.0024 8.7 3.9 43 108-150 22-67 (83)
4 d1wgwa_ a.24.13.1 (A:) Signal 8.1 38 0.0028 8.3 2.3 35 531-565 12-46 (99)
5 d2pv4a1 a.286.1.1 (A:1-144) Un 6.4 52 0.0038 7.4 1.8 17 115-131 114-130 (144)
6 d1j5wa_ d.104.1.1 (A:) Glycyl- 4.4 82 0.006 5.9 3.5 34 675-714 215-248 (281)
7 d1knza_ e.34.1.1 (A:) NSP3 hom 4.3 84 0.0061 5.8 3.7 22 252-273 83-104 (157)
8 d2dkya1 a.60.1.3 (A:8-85) Dele 3.5 1.1E+02 0.0081 4.9 1.7 14 260-273 59-72 (78)
9 d1uuja_ a.221.1.1 (A:) Lissenc 3.1 1.3E+02 0.0093 4.5 2.0 19 250-268 57-75 (76)
10 d2ox6a1 a.35.1.6 (A:5-166) Hyp 2.6 1.6E+02 0.012 3.8 1.2 32 68-99 20-53 (162)
No 1
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=16.59 E-value=17 Score=10.85 Aligned_cols=36 Identities=8% Similarity=0.197 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 146999999998540357888455799999985010
Q 002598 530 PSWLQEILELILEQNHVTNRHPYKILEDVRDALVYI 565 (902)
Q Consensus 530 p~wlqdvl~~ileq~~~t~~~~d~ILedIr~AL~~i 565 (902)
++-|.+.++-+.....++..+++++|.|||.||-..
T Consensus 2 ~~~l~~a~~kl~~~~~i~E~~i~~~l~eIr~ALLeA 37 (84)
T d1j8yf1 2 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISA 37 (84)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 438999999985789887999999999999999865
No 2
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=12.72 E-value=21 Score=10.14 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 46999999998540357888455799999985010
Q 002598 531 SWLQEILELILEQNHVTNRHPYKILEDVRDALVYI 565 (902)
Q Consensus 531 ~wlqdvl~~ileq~~~t~~~~d~ILedIr~AL~~i 565 (902)
..|++.++-+-.+..++..+++++|.+||.||=..
T Consensus 7 ~~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeA 41 (88)
T d1ls1a1 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRALMDA 41 (88)
T ss_dssp HHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999851899888999999999999999984
No 3
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.92 E-value=33 Score=8.72 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 76665324578-98999995344467--888899999998467999
Q 002598 108 GEERLIHLDAA-LKECMDQLHFVREE--QEQRIHDAVMKASMEFEQ 150 (902)
Q Consensus 108 lEdRvshLD~A-LKECmrQLr~~rEE--qEqki~eav~k~s~Ewek 150 (902)
....++.+|.| |-.||+|+|.+--+ -++.+.+|+++-.-..++
T Consensus 22 ~~~~Ls~~d~aRL~SCldqmR~VvGDsvpe~~lv~avlk~dydvek 67 (83)
T d1ufza_ 22 LNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQK 67 (83)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 1230697889999999999999876567799999999980678999
No 4
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.07 E-value=38 Score=8.30 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 46999999998540357888455799999985010
Q 002598 531 SWLQEILELILEQNHVTNRHPYKILEDVRDALVYI 565 (902)
Q Consensus 531 ~wlqdvl~~ileq~~~t~~~~d~ILedIr~AL~~i 565 (902)
..|...++-+..+..++..+++.+|.||+.||-..
T Consensus 12 ~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeA 46 (99)
T d1wgwa_ 12 RKITSALRSLSNATIINEEVLNAMLKEVCTALLEA 46 (99)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999973889788999999999999998874
No 5
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=6.39 E-value=52 Score=7.35 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 45789899999534446
Q 002598 115 LDAALKECMDQLHFVRE 131 (902)
Q Consensus 115 LD~ALKECmrQLr~~rE 131 (902)
+|..||+|.+||-.+|-
T Consensus 114 ~~~~lKd~~KqLKKAR~ 130 (144)
T d2pv4a1 114 AEAALKESVKKLKKART 130 (144)
T ss_dssp HHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998742
No 6
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=4.42 E-value=82 Score=5.90 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8898753100472018888999999999997310422322
Q 002598 675 QFVHACYGVLNKEADFNKFANDLSIALEWIMNHCFSLQDV 714 (902)
Q Consensus 675 ~fvh~C~dlL~gka~le~F~~El~~~L~wi~n~cfs~~d~ 714 (902)
.+-.-|..++.. .|--.+-|-|+ -.+|.|+++|.
T Consensus 215 ~yE~Ea~~Lle~--~L~lPAYD~~L----KaSH~FNLLDA 248 (281)
T d1j5wa_ 215 EYEKEFYRLVEK--NLYLPAYDYIL----KCSHTFNLLDA 248 (281)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCCCHHHHHH----HHHHHHHHHHC
T ss_conf 999999999865--99852799999----98878764611
No 7
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=4.34 E-value=84 Score=5.82 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9799899889999999999873
Q 002598 252 ESVKKIAKLESECQRLRVLVRK 273 (902)
Q Consensus 252 EsvKKIaKLEAECqRLR~lvRK 273 (902)
-..+.|+||..+..+||+|+--
T Consensus 83 T~~~TvarLDedvn~LrmmLSs 104 (157)
T d1knza_ 83 ADTSRPAKLDEDVNKLRMMLSS 104 (157)
T ss_dssp HCTTHHHHHHHHHHHHHHHC--
T ss_pred HCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1200798887899999999960
No 8
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.45 E-value=1.1e+02 Score=4.94 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999873
Q 002598 260 LESECQRLRVLVRK 273 (902)
Q Consensus 260 LEAECqRLR~lvRK 273 (902)
|++=||||.+|-|=
T Consensus 59 l~sL~RRL~tLNkC 72 (78)
T d2dkya1 59 IEALCRRLNTLNKC 72 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999877
No 9
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.09 E-value=1.3e+02 Score=4.52 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8897998998899999999
Q 002598 250 HLESVKKIAKLESECQRLR 268 (902)
Q Consensus 250 hlEsvKKIaKLEAECqRLR 268 (902)
-...-|||..||++|..|+
T Consensus 57 ViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 57 VIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999861
No 10
>d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella oneidensis [TaxId: 70863]}
Probab=2.57 E-value=1.6e+02 Score=3.82 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 678986777899863455566879--98999899
Q 002598 68 DLVKKHAKMAQEAITGREKAEAEV--VSLKQELD 99 (902)
Q Consensus 68 ~lVkqhaKvaeEAv~GwEKAE~E~--~~lKkqLe 99 (902)
..|..-.|..|+-|..||-+|.++ .+-|+.||
T Consensus 20 aqv~~l~k~se~dv~aweage~~~~~laqkklle 53 (162)
T d2ox6a1 20 AQVGQLTNHSEAEVLAWENAETQAPELAQKKLLD 53 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 9988874557777553550577675277864501
Done!