Query 002599
Match_columns 902
No_of_seqs 373 out of 2710
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-265 2E-270 2160.9 45.0 796 101-900 5-800 (892)
2 PLN00070 aconitate hydratase 100.0 8E-254 2E-258 2205.5 65.8 803 99-901 39-841 (936)
3 PTZ00092 aconitate hydratase-l 100.0 1E-250 2E-255 2176.8 64.7 802 91-901 4-805 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 3E-248 6E-253 2152.2 63.2 774 120-901 2-782 (876)
5 PRK12881 acnA aconitate hydrat 100.0 3E-247 6E-252 2149.6 63.5 784 102-901 3-793 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-245 2E-250 2132.9 65.2 783 102-901 4-792 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 2E-242 4E-247 2096.0 61.3 745 120-901 12-765 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 2E-239 3E-244 2048.7 54.7 759 109-900 6-765 (861)
9 TIGR01340 aconitase_mito aconi 100.0 3E-165 6E-170 1446.9 53.4 616 158-901 19-656 (745)
10 PRK07229 aconitate hydratase; 100.0 4E-149 1E-153 1302.3 47.0 552 158-901 2-557 (646)
11 TIGR01342 acon_putative aconit 100.0 3E-146 5E-151 1277.6 46.1 556 160-901 1-563 (658)
12 KOG0453 Aconitase/homoaconitas 100.0 7E-132 1E-136 1106.1 39.4 602 175-900 82-685 (778)
13 TIGR00139 h_aconitase homoacon 100.0 7E-131 2E-135 1147.3 43.7 580 159-900 2-615 (712)
14 PRK11413 putative hydratase; P 100.0 9E-131 2E-135 1151.4 43.1 598 158-901 34-661 (751)
15 cd01586 AcnA_IRP Aconitase A c 100.0 4E-131 8E-136 1087.1 36.4 400 184-668 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 2E-121 4E-126 1033.9 40.5 453 158-669 2-460 (465)
17 PRK12466 isopropylmalate isome 100.0 3E-121 6E-126 1033.7 41.9 453 158-669 3-462 (471)
18 PF00330 Aconitase: Aconitase 100.0 1E-121 3E-126 1038.6 34.5 456 160-666 1-465 (465)
19 PRK05478 isopropylmalate isome 100.0 8E-121 2E-125 1029.5 40.9 453 158-669 2-460 (466)
20 cd01584 AcnA_Mitochondrial Aco 100.0 1E-119 2E-124 1004.7 38.5 409 184-668 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 4E-115 8E-120 962.5 38.3 380 184-668 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 1E-114 3E-119 964.4 40.2 405 160-669 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 4E-114 8E-119 961.9 40.6 407 158-669 2-412 (418)
24 cd01585 AcnA_Bact Aconitase ca 100.0 2E-114 4E-119 954.9 37.1 379 183-668 1-380 (380)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 4E-114 9E-119 960.2 39.7 405 159-669 1-408 (412)
26 TIGR02083 LEU2 3-isopropylmala 100.0 7E-113 2E-117 949.8 41.1 408 159-669 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 2E-109 4E-114 900.5 36.6 410 159-669 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 7E-106 1E-110 897.7 38.0 403 161-668 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 4E-105 1E-109 874.4 34.6 361 184-668 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 1E-100 2E-105 853.0 37.3 388 184-668 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 1.3E-97 3E-102 872.2 40.2 409 157-669 369-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 1.7E-96 4E-101 860.6 42.2 408 157-669 370-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 5.2E-94 1.1E-98 837.6 39.5 409 157-669 442-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 5E-55 1.1E-59 431.4 9.1 130 772-901 1-130 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 4.1E-47 8.9E-52 425.1 24.1 413 160-703 374-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 7.5E-34 1.6E-38 310.7 13.0 202 440-669 16-220 (502)
37 cd01578 AcnA_Mitochon_Swivel M 99.9 1.9E-27 4.2E-32 232.7 5.3 103 772-901 1-103 (149)
38 KOG0454 3-isopropylmalate dehy 99.9 4.9E-25 1.1E-29 242.0 4.3 420 158-667 66-498 (502)
39 PF00694 Aconitase_C: Aconitas 99.9 2.5E-23 5.4E-28 201.3 2.3 105 796-900 3-107 (131)
40 cd01579 AcnA_Bact_Swivel Bacte 99.8 2.8E-19 6E-24 171.4 3.0 82 772-901 1-82 (121)
41 COG0066 LeuD 3-isopropylmalate 99.7 5.9E-19 1.3E-23 178.6 3.0 89 764-900 6-95 (191)
42 TIGR02084 leud 3-isopropylmala 99.7 5.5E-19 1.2E-23 175.9 2.6 80 768-901 2-81 (156)
43 PRK14023 homoaconitate hydrata 99.7 7E-19 1.5E-23 176.9 3.2 82 767-901 2-83 (166)
44 PRK00439 leuD 3-isopropylmalat 99.7 1E-18 2.3E-23 175.3 2.9 81 767-901 2-82 (163)
45 TIGR02087 LEUD_arch 3-isopropy 99.7 1.4E-18 3E-23 172.8 2.4 80 768-901 2-81 (154)
46 PRK01641 leuD isopropylmalate 99.7 1.3E-17 2.7E-22 172.2 2.9 94 765-901 7-101 (200)
47 TIGR00171 leuD 3-isopropylmala 99.7 2E-17 4.2E-22 169.2 1.5 95 764-900 6-102 (188)
48 PLN00072 3-isopropylmalate iso 99.7 4.7E-17 1E-21 171.4 3.8 94 763-901 67-163 (246)
49 cd00404 Aconitase_swivel Aconi 99.6 9.6E-16 2.1E-20 139.4 2.9 33 869-901 17-49 (88)
50 cd01674 Homoaconitase_Swivel H 99.6 6.9E-16 1.5E-20 148.3 1.8 41 857-900 38-78 (129)
51 cd01577 IPMI_Swivel Aconatase- 99.6 7.9E-16 1.7E-20 140.8 1.8 33 869-901 19-51 (91)
52 cd01576 AcnB_Swivel Aconitase 99.3 5.2E-13 1.1E-17 129.7 4.2 31 870-900 53-95 (131)
53 PRK09238 bifunctional aconitat 99.3 3.7E-12 7.9E-17 152.7 5.8 91 762-900 163-265 (835)
54 TIGR00117 acnB aconitate hydra 98.9 8.8E-10 1.9E-14 132.3 4.6 87 765-900 167-266 (844)
55 PLN00094 aconitate hydratase 2 97.7 5E-05 1.1E-09 92.5 5.9 40 859-900 285-337 (938)
56 PF04412 DUF521: Protein of un 95.8 0.025 5.4E-07 65.2 8.1 68 530-605 289-356 (400)
57 COG1679 Predicted aconitase [G 93.1 0.23 4.9E-06 56.6 7.3 68 530-605 289-356 (403)
58 cd01355 AcnX Putative Aconitas 88.8 0.91 2E-05 52.5 6.8 69 531-610 279-347 (389)
59 PF06434 Aconitase_2_N: Aconit 88.7 0.2 4.4E-06 52.5 1.4 32 858-890 45-76 (204)
60 TIGR00829 FRU PTS system, fruc 31.5 37 0.0008 31.3 2.4 31 535-566 2-32 (85)
61 COG1445 FrwB Phosphotransferas 29.4 57 0.0012 32.4 3.4 33 533-566 4-36 (122)
62 PRK03600 nrdI ribonucleotide r 24.4 48 0.0011 33.0 2.0 28 613-640 56-86 (134)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-266 Score=2160.92 Aligned_cols=796 Identities=72% Similarity=1.188 Sum_probs=785.3
Q ss_pred cCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEEee
Q 002599 101 AEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPF 180 (902)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI~~ 180 (902)
+++||+...++|+..++ .++||+|++|+ .++++||||||||||+++||||++.+++++||+||+|+..+.+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 46899888889998764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhh
Q 002599 181 KPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLK 260 (902)
Q Consensus 181 ~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flk 260 (902)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||+|+|+.++++|+++|+..||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEee
Q 002599 261 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 340 (902)
Q Consensus 261 w~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~ 340 (902)
|++++|+|+.++|||+||+|||||||||||||++++++|||++|||||||||++|||++||||||||+|++|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHH
Q 002599 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQ 420 (902)
Q Consensus 341 vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~ 420 (902)
+|+|||++|+|+|.++||++||+|+||++||+.|++||||||||+|+++||++||+||+||+||||||.||||+|+.|++
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhccccc
Q 002599 421 YLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 500 (902)
Q Consensus 421 YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~ 500 (902)
||++|||+++.++.+|.|+|+.++|+++..++.++.|++++++||++|+|+|+||+||||+++|++|+.+|+.||.++++
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHH
Q 002599 501 FKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVV 580 (902)
Q Consensus 501 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V 580 (902)
|||+.++++.+++.+++.|+|++++|.||+|+||+|+||||+|||++|++|++|||||+++|++|+||+||+++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHH
Q 002599 581 TKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 660 (902)
Q Consensus 581 ~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVa 660 (902)
+.||.++|++++|+++||.|+||||+|||||+|+|++++..+|.+|++++++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCC
Q 002599 661 AYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDP 740 (902)
Q Consensus 661 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~ 740 (902)
||||||+++|||++||||++++||.|||+||||+++||++++++.|.|+||++.|+.|..|++.||+|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhh
Q 002599 741 NSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEV 820 (902)
Q Consensus 741 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~ev 820 (902)
+||||++||||++|+.+++.+++|++|+||+.+||+||||||||||+|.++|||+|||.+||++|+|||||||||||++|
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 821 MARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 821 M~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
|.||||+|||+.|+++. +.||.|+|.|+||.++|||||++||++|+|+||+||++||+|||||||||||.|||||||||
T Consensus 722 MaRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAVia 800 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIA 800 (892)
T ss_pred hhcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHH
Confidence 99999999999999995 89999999999999999999999999999999999999999999999999999999999997
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=8.5e-254 Score=2205.54 Aligned_cols=803 Identities=91% Similarity=1.421 Sum_probs=768.7
Q ss_pred hccCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEE
Q 002599 99 MAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (902)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI 178 (902)
|...++|....++|+++++++.|+||+|.+|...++++|||||||||||+||||||..+++++|++|++|......+.||
T Consensus 39 m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei 118 (936)
T PLN00070 39 MASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEI 118 (936)
T ss_pred ccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCcee
Confidence 43348886544788877222349999999986567999999999999999999999999999999999998766667799
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhh
Q 002599 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (902)
Q Consensus 179 ~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~f 258 (902)
+|+|+||+||||||+|++||||||||+++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||.|
T Consensus 119 ~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~f 198 (936)
T PLN00070 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAF 198 (936)
T ss_pred ccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEE
Q 002599 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 338 (902)
Q Consensus 259 lkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~ 338 (902)
|||++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+|
T Consensus 199 lkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~ 278 (936)
T PLN00070 199 LKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 278 (936)
T ss_pred hhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999999997689999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHH
Q 002599 339 MVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVT 418 (902)
Q Consensus 339 l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T 418 (902)
|++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|
T Consensus 279 ~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T 358 (936)
T PLN00070 279 MVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT 358 (936)
T ss_pred eeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhccc
Q 002599 419 LQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 498 (902)
Q Consensus 419 l~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~ 498 (902)
++||+.|||++++++++++|+|+|+||+++..+|++|.|++++|||||+|||+||||++|||++||++++++|.+++..+
T Consensus 359 ~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~ 438 (936)
T PLN00070 359 LQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 438 (936)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccc
Confidence 99999999999999999999999999997656789999999999999999999999999999999999999999888766
Q ss_pred ccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcH
Q 002599 499 VGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSG 578 (902)
Q Consensus 499 ~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~ 578 (902)
++.+|+..+.++.....+++++|++.++++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~ 518 (936)
T PLN00070 439 VGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSG 518 (936)
T ss_pred ccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCH
Confidence 55555543333223334567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHH
Q 002599 579 VVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 658 (902)
Q Consensus 579 ~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~l 658 (902)
+|++||+++||+++|+++||+|++||||+||||+++++++++++|.+|+++++||+|+||||+|||||.+++||||||++
T Consensus 519 ~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~l 598 (936)
T PLN00070 519 VVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 598 (936)
T ss_pred HHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCcccc
Q 002599 659 VVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSW 738 (902)
Q Consensus 659 VaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w 738 (902)
||||||+|+|+|||++||||+++||++|||+||||+.+||++++++.++|++|.+.|++++.+++.|++|++|++.+|+|
T Consensus 599 VaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~w 678 (936)
T PLN00070 599 VVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSW 678 (936)
T ss_pred HHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCch
Q 002599 739 DPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGND 818 (902)
Q Consensus 739 d~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~ 818 (902)
|++||||++||||++++..++++.+|++||||+|+|||||||||||||+|+++||||+||+++||.++||||||||||||
T Consensus 679 d~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ 758 (936)
T PLN00070 679 DPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGND 758 (936)
T ss_pred CCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcc
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEE
Q 002599 819 EVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFI 898 (902)
Q Consensus 819 evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aV 898 (902)
|||+||||+|||++|+|++|++|++|+|+|+|++++|||+|++||++|+|+|||||+|||||||||||||++++||||||
T Consensus 759 evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaV 838 (936)
T PLN00070 759 EIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 838 (936)
T ss_pred hhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q 002599 899 WPF 901 (902)
Q Consensus 899 Ia~ 901 (902)
||-
T Consensus 839 IA~ 841 (936)
T PLN00070 839 IAK 841 (936)
T ss_pred EEc
Confidence 984
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.1e-250 Score=2176.80 Aligned_cols=802 Identities=69% Similarity=1.131 Sum_probs=765.6
Q ss_pred HHHHHhhhhccCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhccc
Q 002599 91 RLERAFATMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWEN 170 (902)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~ 170 (902)
.|.|.+|+. .++|....++|+ ++ ..|+||+|.++...++++|||||||||||+||||||..+++++|++|++|..
T Consensus 4 ~~~~~~~~~--~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSSR--PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhcccc--cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 455666663 478865447787 54 3799999999876689999999999999999999999999999999999987
Q ss_pred CCCCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHH
Q 002599 171 SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQ 250 (902)
Q Consensus 171 ~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~ 250 (902)
....+.||+|+||||+||||||+||++|||||||+++++|+||.+|||.+||+|+|||+||+++++..+++.+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcccceecccCHHHHHH
Q 002599 251 RNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 330 (902)
Q Consensus 251 rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaea 330 (902)
||.|||.||||++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCccee
Q 002599 331 AMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMG 410 (902)
Q Consensus 331 amlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g 410 (902)
+|+|||+||++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccc
Q 002599 411 FFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKAD 490 (902)
Q Consensus 411 ~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~ 490 (902)
|||+|++|++||+.|||++++++++++|.++|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999999999999999999963 5789999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCcee
Q 002599 491 WHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK 570 (902)
Q Consensus 491 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vk 570 (902)
|.+++....+.+++++.+++....+++.++|.+++|.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877654444555543332222234456888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCc
Q 002599 571 TSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA 650 (902)
Q Consensus 571 t~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~ 650 (902)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccC
Q 002599 651 NYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV 730 (902)
Q Consensus 651 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 730 (902)
||||||+|||||||+|+|+||+++||||+|++|++|||+||||+.+||++++..+++|++|.+.|.+|+++++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCcccccc
Q 002599 731 PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 810 (902)
Q Consensus 731 ~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~ns 810 (902)
+++++|+||++||||++||||++++.++++..+|++||||+++|||||||||||||+|+++||||+||+++||.++||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhccc
Q 002599 811 YGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (902)
Q Consensus 811 ygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~ 890 (902)
|||||||||||+||||+|||++|+|+ |.+|++|+|.|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~ 794 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGP 794 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEeec
Q 002599 891 MLLVSLFIWPF 901 (902)
Q Consensus 891 ~~lGv~aVIa~ 901 (902)
++||||||||.
T Consensus 795 ~~lGvraVIA~ 805 (898)
T PTZ00092 795 YLQGVKAVIAE 805 (898)
T ss_pred HHhCCcEEEEe
Confidence 99999999984
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3e-248 Score=2152.22 Aligned_cols=774 Identities=64% Similarity=1.037 Sum_probs=743.8
Q ss_pred eeeeeecCCCC--CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEEeeecceeeeecCccHHHHH
Q 002599 120 FGKFYSLPALN--DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVV 197 (902)
Q Consensus 120 ~~~~~~l~~~~--~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~v 197 (902)
.|+||+|.+|. ..++++|||||||||||+||||||..+++++|++|++|......+.||+|+||||+||||||+||++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 59999999985 3579999999999999999999999999999999999987666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 002599 198 DLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSG 277 (902)
Q Consensus 198 dlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~G 277 (902)
|||||||+++++|+||.+|||.+||+|+|||+||++.+++.+++.+|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccceeeecCC----CcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccC
Q 002599 278 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 353 (902)
Q Consensus 278 I~HQV~lE~la~vv~~~~----G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L 353 (902)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHH
Q 002599 354 HNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA 433 (902)
Q Consensus 354 ~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~ 433 (902)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCCCCC-CCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccc
Q 002599 434 MVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQE 512 (902)
Q Consensus 434 l~e~y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~ 512 (902)
++++|+|+|+||+ +| ++|.|++++|||||+|||+||||++|||++||+++++.|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 9999999999995 34 689999999999999999999999999999999999998887755433334433111
Q ss_pred ceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHH
Q 002599 513 KVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKY 592 (902)
Q Consensus 513 ~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~ 592 (902)
..+..++|++..|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112246888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCC
Q 002599 593 LNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 672 (902)
Q Consensus 593 L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 672 (902)
|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+|||||||+|+|+||+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccCCCCCC
Q 002599 673 DKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (902)
Q Consensus 673 ~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~ 752 (902)
++||||.+++|++|||+||||+.+||++++.+.++++||++.|.+|+.+++.|++|+++++++|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhh
Q 002599 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (902)
Q Consensus 753 ~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~ 832 (902)
+++.++++..+|++||||+++|||||||||||||+|+++||||+||+++||.++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 833 NKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 833 n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||.
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~ 782 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAE 782 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=3e-247 Score=2149.61 Aligned_cols=784 Identities=58% Similarity=0.962 Sum_probs=748.7
Q ss_pred CCchhhhcccccCCCCCceeeeeecCCCC---CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEE
Q 002599 102 EHPFKEILTALPKPGGGEFGKFYSLPALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI 178 (902)
.++|. ..++|++.++ .|+||+|.++. ..++++|||||||||||+||||||..|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 3567887754 79999999984 347999999999999999999999999999999999998766667899
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhh
Q 002599 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (902)
Q Consensus 179 ~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~f 258 (902)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||++||||+||++.+++.+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC----CCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcC
Q 002599 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 334 (902)
Q Consensus 259 lkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~----~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg 334 (902)
|||++++|.||+|+|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999955 3799999999999999999999999999999999999999
Q ss_pred CcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeC
Q 002599 335 QPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPV 414 (902)
Q Consensus 335 ~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~ 414 (902)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++||||||||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhh
Q 002599 415 DHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSC 494 (902)
Q Consensus 415 De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~ 494 (902)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++.+|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999974 58899999999999999999999999999999999999998887
Q ss_pred hcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002599 495 LDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574 (902)
Q Consensus 495 l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~va 574 (902)
+......+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64332222221100 02345578899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEec
Q 002599 575 PGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLA 654 (902)
Q Consensus 575 PGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLA 654 (902)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||+++++|+|+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCC
Q 002599 655 SPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASK 734 (902)
Q Consensus 655 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 734 (902)
||+|||||||+|+|+||+++||||+++||++|||+||||+.+||++++++.++++||.+.|++++++++.|++|++++++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCC
Q 002599 735 LYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSR 814 (902)
Q Consensus 735 ~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsr 814 (902)
+|+||++||||++||||++|..+++++++|++||||+++|||||||||||||+|+++||||+||+++||.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhccccccc
Q 002599 815 RGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLV 894 (902)
Q Consensus 815 RgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lG 894 (902)
|||||||+||||+|+|++|+|+++.+|++|+|+|+|++++|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeec
Q 002599 895 SLFIWPF 901 (902)
Q Consensus 895 v~aVIa~ 901 (902)
||||||.
T Consensus 787 v~aVIA~ 793 (889)
T PRK12881 787 VKAVIAE 793 (889)
T ss_pred CcEEEEe
Confidence 9999984
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1e-245 Score=2132.86 Aligned_cols=783 Identities=62% Similarity=1.029 Sum_probs=750.2
Q ss_pred CCchhhhcccccCCCCCceeeeeecCCCC---CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEE
Q 002599 102 EHPFKEILTALPKPGGGEFGKFYSLPALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (902)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI 178 (902)
.++|.. +++|+..++ .|+||+|.+|. ..++++|||||||||||+|||||++.+++++|++|++|......+.||
T Consensus 4 ~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei 80 (888)
T PRK09277 4 TDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREI 80 (888)
T ss_pred CCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCcee
Confidence 366643 567877654 79999998874 247999999999999999999999999999999999998766667899
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhh
Q 002599 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (902)
Q Consensus 179 ~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~f 258 (902)
+|+||||+|||+||+||++|||||||+++++|+||++|||.+||+|||||+||++.++..+++.+|+..||+||.|||.|
T Consensus 81 ~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~f 160 (888)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQF 160 (888)
T ss_pred eeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCcccceeeccccceeeecC-CC--cccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCC
Q 002599 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 335 (902)
Q Consensus 259 lkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~-~G--~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~ 335 (902)
|||++++|.|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+||
T Consensus 161 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~ 240 (888)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 (888)
T ss_pred HHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcC
Confidence 999999999999999999999999999999999977 78 999999999999999999999999999999999999999
Q ss_pred cEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCC
Q 002599 336 PMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD 415 (902)
Q Consensus 336 p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D 415 (902)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (888)
T PRK09277 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPID 320 (888)
T ss_pred cEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhh
Q 002599 416 HVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCL 495 (902)
Q Consensus 416 e~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l 495 (902)
++|++||+.|||++++++++|+|.++|++|+. +|++|.|+++++||||+|||+||||++|||++||++++++|.+++
T Consensus 321 e~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~ 397 (888)
T PRK09277 321 EETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSA 397 (888)
T ss_pred hhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhc
Confidence 99999999999999999999999999999963 588999999999999999999999999999999999999877653
Q ss_pred cccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEec
Q 002599 496 DNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAP 575 (902)
Q Consensus 496 ~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaP 575 (902)
.. +.+++. .+..++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|
T Consensus 398 ~~--~~~~~~---------~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~P 466 (888)
T PRK09277 398 EL--GVQGFG---------LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAP 466 (888)
T ss_pred hh--hhhhhh---------hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeC
Confidence 21 112221 2234678888999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecC
Q 002599 576 GSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLAS 655 (902)
Q Consensus 576 GS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLAS 655 (902)
||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+||||+..++|||||
T Consensus 467 GS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaS 546 (888)
T PRK09277 467 GSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLAS 546 (888)
T ss_pred CCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCc
Q 002599 656 PPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKL 735 (902)
Q Consensus 656 P~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~ 735 (902)
|+|||||||+|+|+|||++||||++++|++|||+||||+.+||++++.+.+++++|.+.|.+|+.+++.|++|++++++.
T Consensus 547 P~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~ 626 (888)
T PRK09277 547 PPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPL 626 (888)
T ss_pred HHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCC
Q 002599 736 YSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRR 815 (902)
Q Consensus 736 ~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrR 815 (902)
|+||++||||++||||++++.+++++.+|+++|||+++|||||||||||||+|+++||||+||+++||.++|||||||||
T Consensus 627 ~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrR 706 (888)
T PRK09277 627 YDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRR 706 (888)
T ss_pred cccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccc
Confidence 99999999999999999998888788999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccc
Q 002599 816 GNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVS 895 (902)
Q Consensus 816 gN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv 895 (902)
||||||+||||+|||++|+|++|.+|+||+|.|+|+.++|||+|++||++|+|+|||||+|||||||||||||++++|||
T Consensus 707 gN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 707 GNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred ccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeec
Q 002599 896 LFIWPF 901 (902)
Q Consensus 896 ~aVIa~ 901 (902)
|||||.
T Consensus 787 ~avia~ 792 (888)
T PRK09277 787 KAVIAE 792 (888)
T ss_pred cEEEEe
Confidence 999984
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=2.1e-242 Score=2095.99 Aligned_cols=745 Identities=45% Similarity=0.773 Sum_probs=712.6
Q ss_pred eeeeeecC-CCC---CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEEeeecceeeeecCccHHH
Q 002599 120 FGKFYSLP-ALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPA 195 (902)
Q Consensus 120 ~~~~~~l~-~~~---~~~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa 195 (902)
.|+||+|. +|. ..++++|||||||||||+||||||..++++ |++|++| ..+.||+|+|+||+||||||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 59999996 664 347999999999999999999999999999 9999999 23579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc-chHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 002599 196 VVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP 274 (902)
Q Consensus 196 ~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~-~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~pp 274 (902)
+||||+|||+++++|+||++|||.+||+||||||||+|.++ +.+|+.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCC
Q 002599 275 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLH 354 (902)
Q Consensus 275 G~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~ 354 (902)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||||+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHH
Q 002599 355 NGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 434 (902)
Q Consensus 355 ~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l 434 (902)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccce
Q 002599 435 VEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKV 514 (902)
Q Consensus 435 ~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~ 514 (902)
+|+|.|+|++|++ +|++++|++++|||||+|||+||||++|||++||+|++..... .... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c--
Confidence 9999999999975 4679999999999999999999999999999999998752110 0000 0
Q ss_pred eeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHH
Q 002599 515 VKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLN 594 (902)
Q Consensus 515 ~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~ 594 (902)
...| ++.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCCCC
Q 002599 595 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 674 (902)
Q Consensus 595 ~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 674 (902)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCC
Q 002599 675 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDM 754 (902)
Q Consensus 675 eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~ 754 (902)
||||.|+||++|||+||||+.+||++++++.++|+||++.|++++++++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999998876 788999999999999999999999988
Q ss_pred CCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhh
Q 002599 755 TMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNK 834 (902)
Q Consensus 755 ~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~ 834 (902)
+.++.+|++||||+++||+||||||||||+|+++||||+||+++||.++||||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--C--CCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 835 LLN--G--EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 835 ~~~--~--~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
|++ | .+|++|+|+|+|++++|||+|++||++|+|+|||||+|||||||||||||++++|||+||||.
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~ 765 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAE 765 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEc
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999984
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.5e-239 Score=2048.74 Aligned_cols=759 Identities=62% Similarity=1.019 Sum_probs=730.7
Q ss_pred cccccCCCCCceeeeeecCCCCCC-CCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCccEEeeecceeee
Q 002599 109 LTALPKPGGGEFGKFYSLPALNDP-RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLL 187 (902)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~sirvllE~~~R~~d~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~ 187 (902)
+++|.+++. .|+||+|+++... .+.+||||+|||+||++|++|+ ++++++.++.|........||+|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 456777654 8999999999653 6999999999999999999998 899999999998665566799999999999
Q ss_pred ecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcccccc
Q 002599 188 QDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFH 267 (902)
Q Consensus 188 qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~ 267 (902)
|||||+|+++|+|+||+++.++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecCcEEEE
Q 002599 268 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 347 (902)
Q Consensus 268 ~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV 347 (902)
||+|||||+||||||||||||+||+..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHHHhcCC
Q 002599 348 KLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 427 (902)
Q Consensus 348 ~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR 427 (902)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCC
Q 002599 428 SDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVP 507 (902)
Q Consensus 428 ~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~ 507 (902)
++++++++|+|+++|+||++. +|++|+|++++|||||+|+|+||||++||++++|++++.+|.+.+.+....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~------ 392 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK------ 392 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc------
Confidence 999999999999999999764 578999999999999999999999999999999999999988765433110
Q ss_pred cccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHc
Q 002599 508 KETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQS 587 (902)
Q Consensus 508 ~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~ 587 (902)
..+...|+ ++.||+|+||+|||||||||||+|+||++|||||+++|++++|||||+|+|||++|.+||+++
T Consensus 393 -------~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 393 -------RVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred -------cccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 11333454 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCc
Q 002599 588 GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (902)
Q Consensus 588 Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (902)
||+++|+++||++++|||||||||||+|++++++.|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccC
Q 002599 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHE 747 (902)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~ 747 (902)
|++|+++||+|.+++|++|||+||||+.+||.+.+...+++++|.+.|.++|+ |+.++++++++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhcccccc
Q 002599 748 PPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFA 827 (902)
Q Consensus 748 pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~ 827 (902)
||||+.+...+.+ |+++|+|+++|||||||||||||+|+++||||+||..+|+.+.|||||||||||||||+||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998876644 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 828 nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
|+|++|+++++ +|++|+|+|+|+ |||+|++||++++|||||||+|||+|||||||||++++||||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIA 765 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIA 765 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeee
Confidence 99999999988 999999999999 9999999999999999999999999999999999999999999998
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=2.7e-165 Score=1446.90 Aligned_cols=616 Identities=29% Similarity=0.441 Sum_probs=535.5
Q ss_pred cHHHHHHHHhcccCCC-------------CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002599 158 KKEDVEKIIDWENSAP-------------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL 224 (902)
Q Consensus 158 ~~~~vekil~~~~~~~-------------~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~l 224 (902)
.+|++||||+.+.+.. .+.+|.++||||++||+||+|+++||++| |.+ +|..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 5799999999986532 24579999999999999999999999764 653 34456799
Q ss_pred EecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eE
Q 002599 225 VIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 303 (902)
Q Consensus 225 viDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tv 303 (902)
++||++|++.... .|+..++.||.|+|+|++|++++| ||+|+|||+||||||++|+| ++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~~----------a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLENY----------AFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhhc----------cCCCCeE
Confidence 9999999775433 457889999999999999999999 89999999999999999954 5786 69
Q ss_pred EecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEe
Q 002599 304 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFH 383 (902)
Q Consensus 304 VGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~ 383 (902)
|||||||||+||||+|||||||+|++++|+|++|||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHH-HHHHHHHHccccccCCCCCCCCcccEEEE
Q 002599 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRANKMFVDYNEPQQERVYSSYLE 462 (902)
Q Consensus 384 G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~-l~e~y~~~~~l~~~~~~~D~~a~Y~~vie 462 (902)
|||+++||+++|||||||++|+|||+||||+|++|++||+.+||+++..+ .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875432 3333321 233 4789999999999
Q ss_pred EEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCC
Q 002599 463 LNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNT 542 (902)
Q Consensus 463 iDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~ 542 (902)
||||+|||+||+|++|||++||+|+++.+++ .|++ .+|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1222 14789999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhcc
Q 002599 543 SNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVAST 622 (902)
Q Consensus 543 s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~ 622 (902)
|++||+.|| .++|+|+++ ++++.|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+. .
T Consensus 355 r~~Dl~~AA-~ilk~a~~~--~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCA-SIVKDAEQA--GLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHH-HHhhhhhhC--CCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 999965555 555777654 56777999999999999999999999999999999999999999999987542 1
Q ss_pred ccCCCeeEEEeeccCCCCCCCCCC-CCCceEecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHH
Q 002599 623 ITDNDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEV 701 (902)
Q Consensus 623 i~~~~l~~~~VsS~NRNF~GR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~ 701 (902)
+.+|+.+ ++|+|+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4567754 6899999999999954 4578999999999999999999999999999 69999999999 7999999875
Q ss_pred hhccCCccccccccccccCCCcccccccCC--CCCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCccc
Q 002599 702 VQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITT 779 (902)
Q Consensus 702 ~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itT 779 (902)
+| ..++..|+.+..+ ++..|+|+++||||++||+|++ ++..+|+++|||+|+||||||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~-----~~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEP-----WNGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCC-----CCcCCccCCeEEEEECCCcCh
Confidence 22 2346678776554 6789999999999999999964 455789999999999999999
Q ss_pred CcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccC--CCCCC--ceeecCCCcccch
Q 002599 780 DHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP--KTVHVPTGEKLSV 855 (902)
Q Consensus 780 DhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~--~~~g~--~t~~~~~g~~~~i 855 (902)
|||||||+ ||++|| +|.|++ .|.|.. +.+++ .+.+.++|+.++|
T Consensus 563 DHIsPAG~---------~L~~rg----------------------~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAGP---------WLKYKG----------------------HLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccch---------hHhhcC----------------------Chhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 99999995 999954 555555 555542 12334 5677789999999
Q ss_pred HHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 856 FDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 856 ~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
+++|++|++.++|+|||||+||||||||||||+++++|||+||||.
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~ 656 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITK 656 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEe
Confidence 9999999999999999999999999999999999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=4.4e-149 Score=1302.35 Aligned_cols=552 Identities=33% Similarity=0.497 Sum_probs=489.2
Q ss_pred cHHHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCCC
Q 002599 158 KKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL-VIDHSVQVD 233 (902)
Q Consensus 158 ~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~l-viDHsv~~d 233 (902)
.+|++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+| .++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCC
Confidence 3689999999986543 45689999999999999999999999765 8765 3344 344 899998876
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCccc
Q 002599 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMI 313 (902)
Q Consensus 234 ~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~ 313 (902)
. .||.|+|+|++|++++| ||+|+|||+||||||++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 58999999999999999 7999999999999999997764 34 7899999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+|||||||+|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|+|||||++|+|||+||||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+||
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDLs~leP~va 270 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L-----LADPDAEYDEVIEIDLSELEPLIA 270 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c-----cCCCCCCeeEEEEEEccceeeeee
Confidence 9999999999999999999999999999999998765321 1 378999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~l 553 (902)
+|++|||++||+|+++. .|++||||||||+|+||+++||++
T Consensus 271 ~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~i 311 (646)
T PRK07229 271 GPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASI 311 (646)
T ss_pred cCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998631 278999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002599 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (902)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~V 633 (902)
| +|+||+++||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++. + .++++ +|
T Consensus 312 L------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~-------~~~~~---~v 374 (646)
T PRK07229 312 L------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-P-------ATGNV---SL 374 (646)
T ss_pred h------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-C-------CCCcE---EE
Confidence 9 899999999999999999999999999999999999999999999999998543 2 23554 79
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCcccccc
Q 002599 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKS 713 (902)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~ 713 (902)
+|+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |++|||+ ||+. ..+++++|.
T Consensus 375 st~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~- 439 (646)
T PRK07229 375 RTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGII- 439 (646)
T ss_pred EccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhc-
Confidence 999999999999988899999999999999999999 999999987 9999997 6882 123344443
Q ss_pred ccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCCh
Q 002599 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSP 793 (902)
Q Consensus 714 ~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~ 793 (902)
..++.|+.++++. ++||+++|+|+++ +++.++|+|+++|||||||||||||.
T Consensus 440 ------~~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------ 491 (646)
T PRK07229 440 ------APAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------ 491 (646)
T ss_pred ------CCCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc------
Confidence 2355687777653 5788888888654 47999999999999999999999984
Q ss_pred HHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEe
Q 002599 794 TAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILA 873 (902)
Q Consensus 794 a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iiva 873 (902)
+||++ |+|+|.|.+++|.+++ |. ++.++|..+ ++||||
T Consensus 492 --~~l~~--------------r~~~~~l~~~~f~~~~--~~-----------------------f~~~~~~~~-~~iiVa 529 (646)
T PRK07229 492 --KWLPY--------------RSNIPNISEFVFEGVD--NT-----------------------FPERAKEQG-GGIVVG 529 (646)
T ss_pred --chhcc--------------CCCHHHHHHHHhccCC--hh-----------------------hhHHHHhcC-CcEEEe
Confidence 47764 7999999999998542 32 334677655 789999
Q ss_pred cCccCCCcchhhhhcccccccceEEeec
Q 002599 874 GAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 874 G~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
|+||||||||||||++++++||+||||-
T Consensus 530 G~nfG~GSSRE~Aa~a~~~lGv~aVIA~ 557 (646)
T PRK07229 530 GENYGQGSSREHAALAPRYLGVKAVLAK 557 (646)
T ss_pred cCccCCCCchHHHHHHHHHHCCCEEEEe
Confidence 9999999999999999999999999984
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=2.5e-146 Score=1277.57 Aligned_cols=556 Identities=32% Similarity=0.468 Sum_probs=479.6
Q ss_pred HHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002599 160 EDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (902)
Q Consensus 160 ~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (902)
|++||||+.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|.+ +.+++||++++..
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 46899999886543 45689999999999999999999998766 543 344554 6789999988753
Q ss_pred chHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeEEecCCCCcccCcc
Q 002599 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGL 316 (902)
Q Consensus 237 ~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~PdtvVGtDSHT~~~GgL 316 (902)
.||.|+|+||+|.+++| |+.|++||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 26889999999999999 5789999999999999997664 33 6899999999999999
Q ss_pred cceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhh
Q 002599 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRA 396 (902)
Q Consensus 317 G~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRa 396 (902)
|+|||||||+|++++|+||++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCC
Q 002599 397 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPK 476 (902)
Q Consensus 397 TIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~ 476 (902)
|||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998765321 1 479999999999999999999999999
Q ss_pred CCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHH
Q 002599 477 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 556 (902)
Q Consensus 477 ~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak 556 (902)
+|||++||+|+++ . +|++||||||||+|++|+++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999863 1 2568999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeecc
Q 002599 557 KACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSG 636 (902)
Q Consensus 557 ~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~ 636 (902)
+|+||+++||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ . ++++ +|+|+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~-~-------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP-A-------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC-C-------CCcE---EEEcc
Confidence 8999999999999999999999999999999999999999999999999996543 2 3443 79999
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCC-CCChhhHHHHhhccCCcccccccc
Q 002599 637 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI-WPTTEEIAEVVQSSVLPDMFKSTY 715 (902)
Q Consensus 637 NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wP~~~Ei~~~~~~~v~~~~f~~~y 715 (902)
||||+||||+..+.+|||||++|||+||+|+| +|+.. |+.+ +| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 56652 4322 44 45 886652 44555555
Q ss_pred ccccCCCcccccccC---CCCCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCC
Q 002599 716 EAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDS 792 (902)
Q Consensus 716 ~~i~~~~~~w~~l~~---~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s 792 (902)
..++ |+.++. ++.+++. ++||++||+|++++ .+|++ |+++++|||||||||+|||.+
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~---- 494 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD---- 494 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc----
Confidence 5433 776655 4445553 89999999998875 35665 999999999999999999953
Q ss_pred hHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEE
Q 002599 793 PTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIIL 872 (902)
Q Consensus 793 ~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iiv 872 (902)
||.+ |+|.+.+.+.+|.. ++++ +.+.+++|++.+.++|||
T Consensus 495 ----~l~~--------------r~~~~~l~~~~~~~-------------------~~p~---f~~~~~~~~~~~~~~iiV 534 (658)
T TIGR01342 495 ----ILKF--------------RSNIEAISEFTLHR-------------------IDDE---FAERAKAADEKGKAGIII 534 (658)
T ss_pred ----cccc--------------CCCHHHHhhheeeC-------------------CCch---HHHHhhcccccCCceEEE
Confidence 5543 56666665555542 2222 347788999999999999
Q ss_pred ecCccCCCcchhhhhcccccccceEEeec
Q 002599 873 AGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 873 aG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
||+||||||||||||+++++|||+||||-
T Consensus 535 aG~nfG~GSSREhAa~a~~~lGv~aVIA~ 563 (658)
T TIGR01342 535 AGENYGQGSSREHAALAPMFLGVEAVIAK 563 (658)
T ss_pred cCCcCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 99999999999999999999999999984
No 12
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-132 Score=1106.06 Aligned_cols=602 Identities=30% Similarity=0.469 Sum_probs=510.8
Q ss_pred ccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhh
Q 002599 175 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKE 254 (902)
Q Consensus 175 ~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~e 254 (902)
+..+.++||||+|||.|++||++||.. .|... + .+|..++|||.+.+...+..| +.+.-+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k--v--avPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK--V--AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHHh-------cCccc--c--cCCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 347999999999999999999999953 36652 2 357899999999988777655 4556689999
Q ss_pred hhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccCHHHHHHHHc
Q 002599 255 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 333 (902)
Q Consensus 255 ry~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GgLG~lg~GVGg~Eaeaaml 333 (902)
.|.||..+.++| ||.||+||+||+|||+||+|| ||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlEnYA----------fPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLENYA----------FPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeeeccc----------CCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999999988 699999999999999999554 785 68999999999999999999999999999999
Q ss_pred CCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeee
Q 002599 334 GQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP 413 (902)
Q Consensus 334 g~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp 413 (902)
++||.++.|+|+||+|||+|+.|+|+|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhh
Q 002599 414 VDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHS 493 (902)
Q Consensus 414 ~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~ 493 (902)
+|+.+++||+.|||.+. .+..++|+++ +. .+|++|.|+++||||||+|+|+|+||++||-..|++++.+...
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999874 3455666665 32 5899999999999999999999999999999999999875211
Q ss_pred hhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEE
Q 002599 494 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 573 (902)
Q Consensus 494 ~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~v 573 (902)
-+|||.+ |..++||||||+||+|+-.+|.+ +++|..+|+|.+ |.+.|
T Consensus 367 -------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~i-v~~a~~~glk~~--v~F~V 413 (778)
T KOG0453|consen 367 -------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAADI-VKQAKGKGLKPK--VPFYV 413 (778)
T ss_pred -------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHHH-HHHHHhcCCCCC--cceEe
Confidence 1466654 55789999999999997766665 599987776555 99999
Q ss_pred ecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCC-CceE
Q 002599 574 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANY 652 (902)
Q Consensus 574 aPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~-~~~Y 652 (902)
+|||.+|+..++|+|+++.|+++|+.+++.+||||||+|..- . |++||. .+.|+|+||||.||++.+. ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~--d----vk~GE~-ntivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK--D----IKKGEK-NTIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc--c----ccCCCc-CceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999999652 1 344444 2348999999999997655 4579
Q ss_pred ecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCC
Q 002599 653 LASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (902)
Q Consensus 653 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (902)
|+||++|+|+|++|++.||+++|.| .+.+|+.|.|+. |..+|+++ +-++|. ...|+......+
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g--~~ty~ap~~~~~--------- 549 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPG--QDTYQAPPSSSS--------- 549 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCC--cccccCCCCCCC---------
Confidence 9999999999999999999999999 788999999998 89988865 334442 233443211111
Q ss_pred CCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCcccccccc
Q 002599 733 SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYG 812 (902)
Q Consensus 733 ~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsyg 812 (902)
..-..-||+|+.++....|+ +|...|++++.||+|+.++|||||||.||+ ||+++|+...-.|.+
T Consensus 550 ~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaGp---------wlkY~Ghl~nisnn~- 614 (778)
T KOG0453|consen 550 VVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAGP---------WLKYRGHLENISNND- 614 (778)
T ss_pred cceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCCc---------ceeccchhhhcccch-
Confidence 23455689999999888885 467789999999999999999999999997 999987654433322
Q ss_pred CCCCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhccccc
Q 002599 813 SRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPML 892 (902)
Q Consensus 813 srRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~ 892 (902)
+ |...|+- ..+-.+..++.+||..++++.+++||+.|++||+|+++|||+||||||||.+|+.
T Consensus 615 ---------~------igain~E--n~e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~ 677 (778)
T KOG0453|consen 615 ---------L------IGAINKE--NGEANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRH 677 (778)
T ss_pred ---------h------hhhcchh--hhhhhhhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhh
Confidence 0 1111221 1122356677899999999999999999999999999999999999999999999
Q ss_pred ccceEEee
Q 002599 893 LVSLFIWP 900 (902)
Q Consensus 893 lGv~aVIa 900 (902)
||.++||.
T Consensus 678 lGg~~ii~ 685 (778)
T KOG0453|consen 678 LGGRAIIT 685 (778)
T ss_pred cCCcEEEe
Confidence 99999985
No 13
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=7e-131 Score=1147.25 Aligned_cols=580 Identities=25% Similarity=0.369 Sum_probs=448.1
Q ss_pred HHHHHHHHhccc-----CC--CCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002599 159 KEDVEKIIDWEN-----SA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (902)
Q Consensus 159 ~~~vekil~~~~-----~~--~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~ 231 (902)
||.+|||++.+. +. ..+..|.++||++|+||.|+++++ +|. ++|.+ ...+|.. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 578999999886 22 245679999999999999999853 453 35764 5778864 6789999999
Q ss_pred CCCccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCC
Q 002599 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (902)
Q Consensus 232 ~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT 310 (902)
.... +|.+.|+|++..+++| ||+|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~---------------~~~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD---------------KNLKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH---------------HHHHHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8742 3444555555555566 589999999999999999 8899996 579999999
Q ss_pred cccCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEec--Cccc
Q 002599 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHG--DGMG 388 (902)
Q Consensus 311 ~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G--~Gv~ 388 (902)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChh--------HHHHHHHHHH---HccccccCCCCCCCCcc
Q 002599 389 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAMVEGYLR---ANKMFVDYNEPQQERVY 457 (902)
Q Consensus 389 ~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~--------~~~l~e~y~~---~~~l~~~~~~~D~~a~Y 457 (902)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. ...+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999976411 0011111110 001111 2258999999
Q ss_pred cEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEec
Q 002599 458 SSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAIT 537 (902)
Q Consensus 458 ~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IG 537 (902)
+++++||||+|+|+||+|++|++++||+++... | -+|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------------------------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------------------------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C-------------------------ceeeeEEEe
Confidence 999999999999999999999999999987420 1 136799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 002599 538 SCTNTSNPSVMLGAGLVAKKACELG---LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD 614 (902)
Q Consensus 538 SCTN~s~~dl~~aA~lLak~A~~kG---lkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~ 614 (902)
||||+|++|++.||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.++||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7899999999999999999999999999999999999999999999999987
Q ss_pred CChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCCCCCCcccCCCCCeeeccCCCCC
Q 002599 615 LDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 694 (902)
Q Consensus 615 l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~ 694 (902)
+.++ +++ +|+|+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +-||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 7543 454 78999999999999888899999999999999999997 4432210 0 00121
Q ss_pred h-----hhHHHHhhccCCccccccccccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCCCCCCCCCCCCc
Q 002599 695 T-----EEIAEVVQSSVLPDMFKSTYEAI---TKGNPTWNQLSVPASKLYSWDPNSTYIHE--PPYFKDMTMDPPGAHGV 764 (902)
Q Consensus 695 ~-----~Ei~~~~~~~v~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~wd~~styi~~--pp~f~~~~~~~~~~~~i 764 (902)
. ..+.......++++++...-..+ ....+.-.+...+. +.-+.+ .|-++ +.++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILE-------GFPEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCC-------CCCce
Confidence 0 00100001112222321110000 00000001111111 111111 22332 33467
Q ss_pred cccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCce
Q 002599 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (902)
Q Consensus 765 ~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t 844 (902)
..++++++.||||+||||+|++ ||....++++ .|.+..|.+++
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~~----------~~~~~~~~~~-------------~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPGK----------YTYQDDVPKE-------------KMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccchh----------hcccCCCCHH-------------HHHHhhccCCC--------------
Confidence 8889999999999999999996 8743222333 34444554331
Q ss_pred eecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 845 ~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
++++.++++. .|||||+|||||||||||+++++.+||+||||
T Consensus 574 -----------p~f~~~~~~g---~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA 615 (712)
T TIGR00139 574 -----------AEFRTKAHEG---DILVSGFNFGCGSSREQAATAILAKGINLVVS 615 (712)
T ss_pred -----------cchhhcCCCC---CEEEeCCccCCCCcHHHHHHHHHHcCCcEEEE
Confidence 2556677764 49999999999999999999999999999998
No 14
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=8.6e-131 Score=1151.44 Aligned_cols=598 Identities=22% Similarity=0.278 Sum_probs=471.6
Q ss_pred cHHHHHHHHhcccCCCCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002599 158 KKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (902)
Q Consensus 158 ~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (902)
.+|++||||+.+.+...+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||++++...++
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 46899999999977656667999999999999999988877754 4875 44 4 689999999999875443
Q ss_pred hHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCcc
Q 002599 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 316 (902)
Q Consensus 238 ~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GgL 316 (902)
.|.++|.|++..+++|+ +.|+|||+||||||++|+|+ .| +++|||||||| +|||
T Consensus 103 -------------~n~~~~~~~~~~a~k~G-i~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 -------------INEDDHVFGLSAAQKYG-GIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred -------------ccHHHHHHHHHHHHHcC-CcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 35567778877777874 68999999999999999665 45 58999999996 8999
Q ss_pred cceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCc-ccEEEEEecCcccCCChhhh
Q 002599 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGV-VGKFVEFHGDGMGELSLADR 395 (902)
Q Consensus 317 G~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~-vgk~VEF~G~Gv~~LSv~dR 395 (902)
|+|||||||+|++.+|+|++||+++||+|+|+|+|+|++||+||||||+|+++|+++|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCC
Q 002599 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (902)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (902)
||||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999999764311 1 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCccccc--CCcEEEEEeccCCCCCChHHHHHHHH
Q 002599 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGL 553 (902)
Q Consensus 476 ~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~~a~IGSCTN~s~~dl~~aA~l 553 (902)
++|||++||+|+.+++.++++.. +.++..+ ......++.. . +|. .-.|+|||||||||||++|++.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~-~--ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL-D--KIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc-c--cccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998888776532 1111111 0001111111 0 112 22689999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEE
Q 002599 554 VAKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (902)
Q Consensus 554 Lak~A~~kGlkV~-p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~ 632 (902)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.++|||+|+|+++.+ .++++ +
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~~--------~~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDTP--------ANNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCcC--------CCCCE---E
Confidence 9 999998 5799999999999999999999999999999999999999999986542 23554 7
Q ss_pred eeccCCCCCCCCCCCCCc-----eEecCHHHHHHHHhc-CccccCCCCCCcccCCCCCeeeccCCCCChhhHHHHhhccC
Q 002599 633 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSV 706 (902)
Q Consensus 633 VsS~NRNF~GR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v 706 (902)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ |.+ ...+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---Cccc
Confidence 899999999999998876 677779989999988 6997 4432220 00 111 1223
Q ss_pred Cccccc-cccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCccccEEEEecCCCcc-cCcccC
Q 002599 707 LPDMFK-STYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSIT-TDHISP 784 (902)
Q Consensus 707 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~it-TDhIsP 784 (902)
+..+|. ..|....+ +..+.-|..-|.|++++... ++.+-..++|+.|+||+|| ||||+|
T Consensus 497 ~~~~y~~~~~~~~~~------------------~~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGK------------------GATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCC------------------CCCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCcccccccc
Confidence 443333 12211000 12234455556666654432 3456677899999999996 999999
Q ss_pred CCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCC---ceeecCCCcccchHHHHHH
Q 002599 785 AGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP---KTVHVPTGEKLSVFDAAMK 861 (902)
Q Consensus 785 Ag~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~---~t~~~~~g~~~~i~~~a~~ 861 (902)
||. ||++ |||-+-....+|. |..|.+.. +... ....+.+|. +++.|+.
T Consensus 558 aG~---------~l~~--------------Rsn~~~is~~~~~--~~d~~~~~-ra~~~~~~~~~~~~g~---~~~~~~~ 608 (751)
T PRK11413 558 SGE---------TSSY--------------RSNPLGLAEFTLS--RRDPGYVG-RSKAVAELENQRLAGN---VSELTEV 608 (751)
T ss_pred CCC---------cccc--------------ccCHHHHhhhhcc--ccChhhHH-HHHHHhhhhhhhhcCC---cHHHHHH
Confidence 994 8888 6777777777774 33455542 1110 001123443 4577777
Q ss_pred H--------------HhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 862 Y--------------KSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 862 y--------------~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
| ++.+++|||++ .||||||||||||++|++|||+||||-
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAk 661 (751)
T PRK11413 609 FARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAE 661 (751)
T ss_pred HHhhhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEe
Confidence 7 45566666666 999999999999999999999999984
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.8e-131 Score=1087.08 Aligned_cols=400 Identities=77% Similarity=1.209 Sum_probs=388.6
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002599 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (902)
Q Consensus 184 rVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~ 263 (902)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeec----CCCcccCCeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEe
Q 002599 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 339 (902)
Q Consensus 264 ~~f~~i~v~ppG~GI~HQV~lE~la~vv~~----~~G~~~PdtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l 339 (902)
++|+|++|+|||+||||||++|+||++++. +.|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHH
Q 002599 340 VLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419 (902)
Q Consensus 340 ~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl 419 (902)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccc
Q 002599 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 499 (902)
Q Consensus 420 ~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~ 499 (902)
+++++||||+|||+||+|++|||++||..
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------- 265 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------- 265 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC-------------
Confidence 56799999999999999999999999821
Q ss_pred cCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHH
Q 002599 500 GFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGV 579 (902)
Q Consensus 500 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~ 579 (902)
+|++||||||||+|+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 266 ------------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 266 ------------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred ------------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHH
Q 002599 580 VTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 659 (902)
Q Consensus 580 V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lV 659 (902)
|+++|+++|++++|+++||.|.+|||++|+|+++++.+.+++.+.+||+++++|+|+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHhcCcc
Q 002599 660 VAYALAGTV 668 (902)
Q Consensus 660 aA~AlaG~I 668 (902)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=1.7e-121 Score=1033.93 Aligned_cols=453 Identities=25% Similarity=0.373 Sum_probs=396.0
Q ss_pred cHHHHHHHHhcccCCC-CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002599 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (902)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (902)
++|++|||++.+.... .++.+.++|||+++||+|+++++.. || ++|. +.++|. ++.+++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~---~~----~~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEG---LR----QAGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHH---HH----HcCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3689999999987643 4567889999999999999999743 33 3463 466665 689999999999763
Q ss_pred -cchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCccc
Q 002599 236 -RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (902)
Q Consensus 236 -~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (902)
+..++...|+..++.+|.++|.+ +| +++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------RL--FDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------ee--eccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667888999999999999875 22 55679999999999999 899999 6899999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++++|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998877543 36788888888753 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcc--cccCCcEEEEEeccCCCCCChHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGA 551 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IGSCTN~s~~dl~~aA 551 (902)
+|++|+|++||+|+.+++....... ++......++|+|... .+.+++|++||||||||||++||+.||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876554432110 1111112233433322 366889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEE
Q 002599 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAA 631 (902)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~ 631 (902)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 998 9999999999999999999999999999999999999999999999999999887554 443
Q ss_pred EeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 632 ~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+++|+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 5789999999999985 577999999999999999996
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=2.6e-121 Score=1033.73 Aligned_cols=453 Identities=27% Similarity=0.393 Sum_probs=400.7
Q ss_pred cHHHHHHHHhcccCCC-CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002599 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (902)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (902)
.+|++|||++.+.... ++++|.++|||+++||+|+++++.+|++| |. ..+||.++ .+++||++|++.+.
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999986642 34489999999999999999999998654 53 48899875 68999999999732
Q ss_pred ---chHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCcc
Q 002599 237 ---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 312 (902)
Q Consensus 237 ---~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~ 312 (902)
..+....|+.+++.+|.++|.+ +| +++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------RL--FDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3346678889999999998864 22 45678999999999999 8999997 69999999999
Q ss_pred cCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCCh
Q 002599 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (902)
Q Consensus 313 ~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv 392 (902)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccc
Q 002599 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (902)
Q Consensus 393 ~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~V 472 (902)
++|||||||++|+|||+||||+|++|++||+.++|.++. ++|.++++.|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788888888653 58999999999999999999999
Q ss_pred cCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcc--cccCCcEEEEEeccCCCCCChHHHHH
Q 002599 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 550 (902)
Q Consensus 473 AgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IGSCTN~s~~dl~~a 550 (902)
|+|++|||++||+|+.+++.++++.. ++......++|++... .+.+.+|+|||||||||||+||++.|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887765421 1111122344544322 25678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeE
Q 002599 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (902)
Q Consensus 551 A~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~ 630 (902)
|++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+||||+|+|++++++++ +++
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999876543 454
Q ss_pred EEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 631 ~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+|||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 689999999999999 4567999999999999999996
No 18
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=1.2e-121 Score=1038.63 Aligned_cols=456 Identities=40% Similarity=0.631 Sum_probs=369.2
Q ss_pred HHHHHHHhcccCCC----CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002599 160 EDVEKIIDWENSAP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (902)
Q Consensus 160 ~~vekil~~~~~~~----~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (902)
|..|||++.+.... .+.+|.++|||+++||+||++++.+|++|+ . .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g-------~--~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMG-------E--KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHC-------H--CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCC-------C--ceecCCC-ceEEecCccccccc
Confidence 56889998886532 345799999999999999999999998763 2 2456664 89999999999976
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCcccCC-eEEecCCCCccc
Q 002599 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 313 (902)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG-~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~ 313 (902)
+.. |+..++.+|+++|+|++|.+++|+ +.+++|| .||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 778899999999999999999986 5555555 4999999999 7888995 799999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|||||||++|+||++||||+|++|++||+.++|.++..++.+.|.+.+.|+ +|++|.|+++++||||+|||+||
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va 290 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVA 290 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCccccccc
Confidence 9999999999999999999999999999999999988777778888888776 78899999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCC--CcccccCCcEEEEEeccCCCCCChHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG--QPAELKHGSVVIAAITSCTNTSNPSVMLGA 551 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA 551 (902)
+|++|||++||+|+.+++.++++.. . +......++|++ ...++.+++|++||||||||||+||+++||
T Consensus 291 ~P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA 360 (465)
T PF00330_consen 291 GPHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAA 360 (465)
T ss_dssp -SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHH
T ss_pred cCCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHH
Confidence 9999999999999999888765421 1 111122355543 235788999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccC-CCeeE
Q 002599 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD-NDIVA 630 (902)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~-~~l~~ 630 (902)
++|+++|+ ++|+||||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 361 ~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~-- 430 (465)
T PF00330_consen 361 GILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV-- 430 (465)
T ss_dssp HHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE--
T ss_pred HHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce--
Confidence 99977775 799999999999999999999999999999999999999999999999996 3222 222 444
Q ss_pred EEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcC
Q 002599 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 666 (902)
Q Consensus 631 ~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG 666 (902)
+|+|+||||+||||+..+.+|||||++|||+||+|
T Consensus 431 -~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 -CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred -EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=8.1e-121 Score=1029.55 Aligned_cols=453 Identities=26% Similarity=0.364 Sum_probs=399.4
Q ss_pred cHHHHHHHHhcccCCC-CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002599 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (902)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (902)
.+|++|||++.+.... .++.+.+++||+++||+|+++++..|. ++|. +.++|+. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 3689999999987643 456788999999999999999985543 3464 4778874 77899999999975
Q ss_pred -cchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCccc
Q 002599 236 -RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (902)
Q Consensus 236 -~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (902)
+..++...|+.+++++|.+||.|. | +++.+||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466777889999999999998771 2 45567899999999999 789999 6899999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.++++.|+.. .+|++|+|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999554432 477899999998754 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcc--cccCCcEEEEEeccCCCCCChHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLGA 551 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IGSCTN~s~~dl~~aA 551 (902)
+|++|||++||+|+.+++.+++++.. +.......+|++... .+.+++|+|||||||||||+||+++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 99999999999999998887765431 111122334443221 266889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEE
Q 002599 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAA 631 (902)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~ 631 (902)
++| ||+||+||||++|+|||++|++||+++|++++|+++||.|.+||||+|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999985542 45776
Q ss_pred EeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 632 ~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+|+|+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 78899999999999655 58999999999999999996
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1.1e-119 Score=1004.70 Aligned_cols=409 Identities=33% Similarity=0.519 Sum_probs=364.8
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002599 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (902)
Q Consensus 184 rVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~ 263 (902)
||++||+||+++++||++| |.+ +.++| .++++||++|++.++.++ ...++.+|.|+|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~~-~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GLP-KVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CCC-CCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 653 45544 588999999998776544 4667889999999999999
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecC
Q 002599 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (902)
Q Consensus 264 ~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vP 342 (902)
++| ||+|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 999 8999999999999999994 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHH
Q 002599 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (902)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 422 (902)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002599 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (902)
Q Consensus 423 ~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~ 502 (902)
+.++|+++ ++++++|+ ++.++ +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999866 68888887 34443 7899999999999999999999999999999999999864321
Q ss_pred CCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002599 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (902)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (902)
.|++ .+|+|||||||||||+||+.. |+.++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~-AA~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGR-AASIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHH-HHHHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1222 147899999999999999554 5567799999999999 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CChhhhccccCCCeeEEEeeccCCCCCCCCC-CCCCceEecCHHHHH
Q 002599 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 660 (902)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~-l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~g-p~~~~~YLASP~lVa 660 (902)
||+++||+++|.++||.|.+||||+|+|++++ .. .+++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 22 223321 478999999999994 445679999999999
Q ss_pred HHHhcCcc
Q 002599 661 AYALAGTV 668 (902)
Q Consensus 661 A~AlaG~I 668 (902)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=3.9e-115 Score=962.46 Aligned_cols=380 Identities=27% Similarity=0.432 Sum_probs=343.8
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002599 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (902)
Q Consensus 184 rVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~ 263 (902)
|+++||+|+++++.. ||+ +|.+ ..+||++ +.+++||++|++ +....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~~---~~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFEG---LRE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHHH---HHH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 689999999999743 333 4543 3556654 689999999998 3445677777778777653
Q ss_pred cccccceeeCC-CCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeec
Q 002599 264 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (902)
Q Consensus 264 ~~f~~i~v~pp-G~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~v 341 (902)
|+++++ |+||||||++| .|++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 344567 99999999999 788888 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHH
Q 002599 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (902)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~Y 421 (902)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccC
Q 002599 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (902)
Q Consensus 422 L~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~ 501 (902)
|+.++|++. + .+ .+|++|.|+++++||||+|||+||+|++|||++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999988631 1 22 47999999999999999999999999999999999998631
Q ss_pred CCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002599 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (902)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (902)
+|+|||||||||+|+||+++||++| ||+||+|+||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002599 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (902)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (902)
++|+++||+++|+++||.|.+|||++|+|+++++. .+||+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 45665 689999999999999888999999999999
Q ss_pred HHhcCcc
Q 002599 662 YALAGTV 668 (902)
Q Consensus 662 ~AlaG~I 668 (902)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=1.2e-114 Score=964.43 Aligned_cols=405 Identities=28% Similarity=0.436 Sum_probs=362.3
Q ss_pred HHHHHHHhcccCC--CCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002599 160 EDVEKIIDWENSA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (902)
Q Consensus 160 ~~vekil~~~~~~--~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (902)
|++|||++.+.+. ..++.+.+++|++++||.|+++++..|. ++|.+ +.+||++ +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGID-KVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-cCCCCCc-EEEEcCCCCCCCChh-
Confidence 4689999998764 2456788999999999999999987664 44753 5778875 788999999988642
Q ss_pred hHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCc
Q 002599 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (902)
Q Consensus 238 ~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~-v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Gg 315 (902)
.+..++..++|.+ +| ||. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~-------------~~-gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVK-------------KT-GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHH-------------Hc-CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 3334555555555 22 354 789999999999999 788899 689999999999999
Q ss_pred ccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhh
Q 002599 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (902)
Q Consensus 316 LG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dR 395 (902)
||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCC
Q 002599 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (902)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (902)
+|||||++|+|||+||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999999765321 12 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHH
Q 002599 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (902)
Q Consensus 476 ~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLa 555 (902)
++|||++||+|+.+ . .|+|||||||||+|++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEG--------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCC--------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 99999999999863 1 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeec
Q 002599 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (902)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS 635 (902)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+ .+|++ +|+|
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 89999999999999999999999999999999999999999999999999975443 34565 7899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999996
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.8e-114 Score=961.95 Aligned_cols=407 Identities=30% Similarity=0.454 Sum_probs=363.0
Q ss_pred cHHHHHHHHhcccCCC--CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002599 158 KKEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (902)
Q Consensus 158 ~~~~vekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (902)
.+|++||||+.+.+.. .++.+.+++|++++||.|+++++..|.+ +|.+ ..++|++ +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 3689999999987643 4567889999999999999999876643 4654 4778875 78899999999853
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCccc
Q 002599 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (902)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~-v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (902)
..+..++..++|.| +| ||+ |++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~-------------~~-gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAK-------------EQ-GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHH-------------Hc-CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 33345555555554 22 365 788999999999999 788899 5899999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|+|||||++|+|||+||||+|++|++||+.+++.+. . .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~--~----------~l----~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY--K----------PW----KSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc--c----------cc----cCCCCCCEEEEEEEEcccceeeee
Confidence 9999999999999999999999999999999864331 0 12 479999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~l 553 (902)
+|++|||++||+|+++ . +|+|||||||||+|+||+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEG--------------T-------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCC--------------c-------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 9999999999999863 1 267999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002599 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (902)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~V 633 (902)
| ||+||+++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|++...+ .+|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVL-------APGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999865433 23554 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+|+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 999999999999888899999999999999999996
No 24
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.8e-114 Score=954.86 Aligned_cols=379 Identities=36% Similarity=0.580 Sum_probs=348.4
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhc
Q 002599 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (902)
Q Consensus 183 drVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~ 262 (902)
|++++||.|+++++..|+ ++|.+ ..++| . +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~-~-~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTE-L-SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCC-C-eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987663 45775 35556 3 7889999999864 2677899999999
Q ss_pred ccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeec
Q 002599 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (902)
Q Consensus 263 ~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~v 341 (902)
+++| ||++++||+|||||+++|+|+ .| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~~~----------~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLERFA----------VPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhhcc----------CCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9999 699999999999999999554 46 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHH
Q 002599 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (902)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~Y 421 (902)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++|+|||||++|+|||++|||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccC
Q 002599 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (902)
Q Consensus 422 L~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~ 501 (902)
|+.+||.+++.. + .+|++|.|+++++||||+|||+||+|++|||++||+|+.+
T Consensus 205 l~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g------------ 257 (380)
T cd01585 205 LAAQGREDDWVE----------L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG------------ 257 (380)
T ss_pred HHhcCCchhccc----------c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC------------
Confidence 999998654311 2 4799999999999999999999999999999999999863
Q ss_pred CCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002599 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (902)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (902)
. +|+|||||||||+|+||+++||++| ||+||+|+||++|+|||++|+
T Consensus 258 --~-------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 258 --I-------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred --c-------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 0 3789999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002599 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (902)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (902)
++|+++|++++|+++||.|.+|||++|+|+++.+ .+|++ +|+|+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~--------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP--------PTGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC--------CCCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997653 23554 789999999999998888999999999999
Q ss_pred HHhcCcc
Q 002599 662 YALAGTV 668 (902)
Q Consensus 662 ~AlaG~I 668 (902)
+||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999987
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=4.1e-114 Score=960.22 Aligned_cols=405 Identities=28% Similarity=0.407 Sum_probs=364.2
Q ss_pred HHHHHHHHhcccCCC--CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002599 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (902)
Q Consensus 159 ~~~vekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (902)
||++|||++.+.+.. .+..+.+++|++++||.|+++++..|. ++| .++++|++ +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 478999999987643 456788999999999999999987664 346 46888886 788999999998643
Q ss_pred chHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCc
Q 002599 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (902)
Q Consensus 237 ~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~Gg 315 (902)
.+..++..++|.| +| ||++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~-------------~~-gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK-------------EH-GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH-------------Hc-CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3333444444444 22 477899999999999999 889999 579999999999999
Q ss_pred ccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhh
Q 002599 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (902)
Q Consensus 316 LG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dR 395 (902)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCC
Q 002599 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (902)
Q Consensus 396 aTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (902)
+|||||++|+||++||||+|++|++||+.++|.+. + .+ .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~--~----------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF--R----------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCccc--c----------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 99999999999999999999999999999998642 1 22 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHH
Q 002599 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (902)
Q Consensus 476 ~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLa 555 (902)
++|||++|++++.+. +|++||||||||+|++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998631 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeec
Q 002599 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (902)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS 635 (902)
||+||+|+||++|+|||++|+++++++|++++|.++||.|.+|||++|+|++..++ .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 34665 6899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 636 ~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888889999999999999999996
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=7.5e-113 Score=949.83 Aligned_cols=408 Identities=31% Similarity=0.456 Sum_probs=362.2
Q ss_pred HHHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002599 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (902)
Q Consensus 159 ~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (902)
||++|||++.+.+.. .+..|.+++|++++||.|+++++..|. ++|. +..+||++ +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 468999999997643 456788999999999999999987663 4565 35788875 88899999999853
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhcccccccce-eeCCCC-cccceeeccccceeeecCCCcccC-CeEEecCCCCcc
Q 002599 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTM 312 (902)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~-v~ppG~-GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~ 312 (902)
..+..++..++|.| +++ |+ |+++|+ |||||+++| +|++.| +++|||||||||
T Consensus 72 --~~a~~~~~~r~fa~--------~~g------i~~f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t 126 (419)
T TIGR02083 72 --KSAEQCKMMREFAR--------EQG------IEKFFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCT 126 (419)
T ss_pred --HHHHHHHHHHHHHH--------HcC------CcceecCCCcceeeeeccc---------cCccCCCeEEEecCCCccc
Confidence 34445666666666 333 53 577885 999999999 899999 579999999999
Q ss_pred cCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCCh
Q 002599 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (902)
Q Consensus 313 ~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv 392 (902)
+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+
T Consensus 127 ~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~ 206 (419)
T TIGR02083 127 YGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSM 206 (419)
T ss_pred cCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccc
Q 002599 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (902)
Q Consensus 393 ~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~V 472 (902)
++|+|||||++|+||++||||+|++|++||+.+++.+ ++ .+ .+|++|.|+++++||||+|||+|
T Consensus 207 ~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~v 270 (419)
T TIGR02083 207 DDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQV 270 (419)
T ss_pred HHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceee
Confidence 9999999999999999999999999999999766432 11 12 47999999999999999999999
Q ss_pred cCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHH
Q 002599 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (902)
Q Consensus 473 AgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~ 552 (902)
|+|++|||++||+|++.. | -+|++||||||||+|++||++||+
T Consensus 271 a~P~~pdnv~~v~e~~~~------------g-------------------------~~id~v~IGSCTngr~eDl~~AA~ 313 (419)
T TIGR02083 271 AFPHLPENTKDISEAGKE------------E-------------------------IKIDQVVIGSCTNGRLEDLRLAAE 313 (419)
T ss_pred cCCCCcccCcChhhcccc------------c-------------------------CccCeEEEEcCCCCChHHHHHHHH
Confidence 999999999999998620 1 136799999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEE
Q 002599 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAA 632 (902)
Q Consensus 553 lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~ 632 (902)
+| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+ .++++ +
T Consensus 314 iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l-------~~ge~---~ 377 (419)
T TIGR02083 314 IL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGIL-------AEGER---A 377 (419)
T ss_pred HH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999884443 33554 7
Q ss_pred eeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 633 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 633 VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
|||+||||+||||...+.+|||||++|||+||+|+|+
T Consensus 378 vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 378 ISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 8999999999999666789999999999999999996
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-109 Score=900.47 Aligned_cols=410 Identities=30% Similarity=0.458 Sum_probs=360.7
Q ss_pred HHHHHHHHhcccCCC--C-ccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002599 159 KEDVEKIIDWENSAP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (902)
Q Consensus 159 ~~~vekil~~~~~~~--~-~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (902)
+|..|||++.+.+.. . ++.+-+++|++|+||.|++.++.-| +++|. +.++|++ +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999997643 2 2447789999999999999987543 45576 5778875 78899999999865
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcccceeeccccceeeecCCCcccC-CeEEecCCCCccc
Q 002599 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (902)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG-~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (902)
.. +.++ .++.+|.++| ++ +.|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~--a~~~---~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--AEQQ---KELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--HHHH---HHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 33 3334 4444554433 22 4557788 9999999999 999999 5899999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (902)
+|||||||++|+||++|+|+||++|++||+.... +...|+.. .+|+||.|+++++||+|+|||+|+
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~-------------a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDG-------------AVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhc-------------ccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 9999999999999999999999999999993221 11234333 589999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002599 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (902)
Q Consensus 474 gP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~l 553 (902)
||++|+|+++|+|+.++ ++ .|+|+|||||||+|++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~--------------~i-----------------------~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPD--------------PI-----------------------KIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCC--------------ce-----------------------eeceEEEeccCCccHHHHHHHHHH
Confidence 99999999999998642 11 377999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002599 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (902)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~V 633 (902)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.+.+. +||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~-------~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLG-------PGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCC-------CCCE---Ee
Confidence 9 899999999999999999999999999999999999999999999999999966644 4555 67
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 634 sS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
||+||||+||||+..+.+||+||+++||+|++|+|+
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999777789999999999999999996
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=6.9e-106 Score=897.74 Aligned_cols=403 Identities=24% Similarity=0.347 Sum_probs=350.2
Q ss_pred HHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002599 161 DVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (902)
Q Consensus 161 ~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (902)
++||||+.+.+.. .+..|.+++|++++||.||++++..|.. +|. +++||++ +.+++||++|+....
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~~-~v~~~DH~~p~~~~~- 69 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSADL-VMQSFCHTAAYPKPV- 69 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCcc-EEEEcCCCCCCCCHH-
Confidence 3799999986643 4667899999999999999999877643 454 4678875 788999999988543
Q ss_pred hHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCcccCcc
Q 002599 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 316 (902)
Q Consensus 238 ~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GgL 316 (902)
.+..++..++|.++ + ++.|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 -~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 70 -DVKTHRTLPDFISN--------R------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred -HHHHHHHHHHHHHH--------c------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 34466667777773 2 367899999999999888 34786 57999999999986
Q ss_pred cceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHH----H--------HHhcCcccEEEEEec
Q 002599 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQ----M--------LRKHGVVGKFVEFHG 384 (902)
Q Consensus 317 G~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~----~--------Lr~~G~vgk~VEF~G 384 (902)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998754 3 33335689999995
Q ss_pred CcccCCChhhhhhhhccccccCcceeeeeCCHHH-HHHHHhc----------CCCh-----hHHHHHHHHHHHccccccC
Q 002599 385 DGMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDY 448 (902)
Q Consensus 385 ~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~T-l~YL~~t----------gR~~-----~~~~l~e~y~~~~~l~~~~ 448 (902)
|+++||+++|+|||||++|+|||+||||+|++| ++||+.+ ||++ .+.++++.|.+++.+|
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL--- 275 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc---
Confidence 599999999999999999999999999999988 8999996 5542 3456778888887777
Q ss_pred CCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCccccc
Q 002599 449 NEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK 527 (902)
Q Consensus 449 ~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~ 527 (902)
.+|++|.|+++++||||+| ||+||+|++|||++||+|+.+ .
T Consensus 276 -~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~----------------------- 317 (436)
T cd01581 276 -EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------K----------------------- 317 (436)
T ss_pred -cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------C-----------------------
Confidence 4799999999999999999 999999999999999999863 1
Q ss_pred CCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002599 528 HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTT 607 (902)
Q Consensus 528 ~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~ 607 (902)
+|+++||||||| +++|++.||.+| ||+|+++ ||++|+|||++|+++|+++|++++|+++||.|.+||||+
T Consensus 318 --~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~ 387 (436)
T cd01581 318 --KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSL 387 (436)
T ss_pred --ccceEEEecCCC-CHHHHHHHHHHH------cCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccc
Confidence 256899999999 999999999999 9999754 999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCcc
Q 002599 608 CIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (902)
Q Consensus 608 CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (902)
|+|+.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 388 C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 388 CMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred ccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 99985543 45676 789999999999999 668999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=4.4e-105 Score=874.39 Aligned_cols=361 Identities=32% Similarity=0.491 Sum_probs=318.2
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002599 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (902)
Q Consensus 184 rVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~ 263 (902)
.+++||.|+++++. |. ++|. ++.++|++ +.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998764 42 3575 46888875 788999999988532 2333333344333
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecC
Q 002599 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (902)
Q Consensus 264 ~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vP 342 (902)
+| +|+|++||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 44 588999999999999999 8899997 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHH
Q 002599 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (902)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 422 (902)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002599 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (902)
Q Consensus 423 ~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~ 502 (902)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 457999999999999999999999999997420
Q ss_pred CCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHH
Q 002599 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVT 581 (902)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kG-lkV~p~Vkt~vaPGS~~V~ 581 (902)
+ -+|++||||||||+|++|++.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ~-------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 N-------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred C-------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 1 1367999999999999999999999943332222 3399999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 002599 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (902)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA 661 (902)
++|+++||+++|.++||.|.+|||++|+|+++++.+ ++|+ +|||+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999987643 3565 689999999999998888999999999999
Q ss_pred HHhcCcc
Q 002599 662 YALAGTV 668 (902)
Q Consensus 662 ~AlaG~I 668 (902)
+||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=9.7e-101 Score=852.97 Aligned_cols=388 Identities=38% Similarity=0.610 Sum_probs=353.3
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002599 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (902)
Q Consensus 184 rVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~a~~~n~~~ef~rN~ery~flkw~~ 263 (902)
||++||+||++++.+|+.| |.+.+.+||. ++.+++||++|++. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887543 5532456664 69999999999863 26778889999998
Q ss_pred cccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccCHHHHHHHHcCCcEEeecC
Q 002599 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (902)
Q Consensus 264 ~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vP 342 (902)
++|+ |+|++||+|||||+++|++ ..| ++++||||||||+||||+++||+|++|++++|+++++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8885 8999999999999999954 345 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChhhhhhhhccccccCcceeeeeCCHHHHHHH
Q 002599 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (902)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 422 (902)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002599 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (902)
Q Consensus 423 ~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~ 502 (902)
+.++|++..+ +++.|.+. + .+|++|.|+++++|||++|||+|++|++|||++||+++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987644 34444432 2 4799999999999999999999999999999999999752
Q ss_pred CCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002599 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (902)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (902)
.+|++||||||||+|++|++.||.+| ||+||+++||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13789999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHH
Q 002599 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (902)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~ 662 (902)
+++++|++++|+++||.|..+||++|+|+++++.. +|++ +|+|+||||+||||+..+.+|||||++|||+
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999988743 3554 6899999999999998889999999999999
Q ss_pred HhcCcc
Q 002599 663 ALAGTV 668 (902)
Q Consensus 663 AlaG~I 668 (902)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=1.3e-97 Score=872.23 Aligned_cols=409 Identities=23% Similarity=0.334 Sum_probs=356.9
Q ss_pred ccHHHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002599 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (902)
Q Consensus 157 ~~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (902)
..+|++|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCCC
Confidence 45799999999886643 46678999999999999999986544 56676 4677775 778999999987
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EEecCCCCcc
Q 002599 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (902)
Q Consensus 234 ~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~ 312 (902)
.. .++..++..++|.+++ |+.+++||+|||||++ +|+++||+ ++||||||||
T Consensus 439 ~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 KP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred CH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 43 4455666666776632 3456889999999995 35789986 5999999999
Q ss_pred cCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHH------------hcCcccEEE
Q 002599 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLR------------KHGVVGKFV 380 (902)
Q Consensus 313 ~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr------------~~G~vgk~V 380 (902)
+|| ||||+|++|++.+|++|.+||+|||+|+|+|+|+|++|||+|||||+|+..+. ++|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 78999999999999999999999999999999999999999999999943333 335789999
Q ss_pred EEecCcccCCChhhhhhhhccccccCcceeeee-CCHHHHHHHHhc----------CCCh-----hHHHHHHHHHHHccc
Q 002599 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (902)
Q Consensus 381 EF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp-~De~Tl~YL~~t----------gR~~-----~~~~l~e~y~~~~~l 444 (902)
||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 788889999986 6642 356778999988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCc
Q 002599 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (902)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (902)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 4799999999999999999 9999999999999999998631
Q ss_pred ccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002599 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (902)
Q Consensus 524 ~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (902)
+|++||||||| |+++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 604 GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
||++|+||++.+ .+|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|+
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 999999996543 45675 689999999999997 5679999999999999999995
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1.7e-96 Score=860.58 Aligned_cols=408 Identities=23% Similarity=0.340 Sum_probs=355.3
Q ss_pred ccHHHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002599 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (902)
Q Consensus 157 ~~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (902)
.++|.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. .+++|++ +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999986642 46678999999999999999997655 44555 4677765 788999999877
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCe-EEecCCCCcc
Q 002599 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (902)
Q Consensus 234 ~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdt-vVGtDSHT~~ 312 (902)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 34555677777777632 355789999999999776 457875 6999999999
Q ss_pred cCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHh------------cCcccEEE
Q 002599 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (902)
Q Consensus 313 ~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~------------~G~vgk~V 380 (902)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 57 999999999999999999999999999999999999999999999999644442 45689999
Q ss_pred EEecCcccCCChhhhhhhhccccccCcceeeeeCCHH-HHHHHHhc----------CCCh-----hHHHHHHHHHHHccc
Q 002599 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (902)
Q Consensus 381 EF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~-Tl~YL~~t----------gR~~-----~~~~l~e~y~~~~~l 444 (902)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999995 7654 356788899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCc
Q 002599 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (902)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (902)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 4799999999999999999 9999999999999999998631
Q ss_pred ccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002599 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (902)
Q Consensus 524 ~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (902)
.|++||||||| |+++|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 7999999999999 9999988 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 604 GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
||++|+||++.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|+
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKIP 810 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCcccC
Confidence 999999996654 34554 688999999999998 4579999999999999999994
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=5.2e-94 Score=837.64 Aligned_cols=409 Identities=22% Similarity=0.303 Sum_probs=352.5
Q ss_pred ccHHHHHHHHhcccCC----CCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 002599 157 VKKEDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQV 232 (902)
Q Consensus 157 ~~~~~vekil~~~~~~----~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~ 232 (902)
..+|++|||++.+.+. ..+..|..++|.|++||.||++++..| +++|.. .++|+. |.+++||.+++
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~ef-------kel~~~--~~dpdk-v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDEL-------KDLACL--GFSADL-VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhccc--ccCccc-EEEEccCCCCC
Confidence 4689999999998653 246678999999999999999997655 444432 334443 68899999888
Q ss_pred CCccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCC-eEEecCCCCc
Q 002599 233 DVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 311 (902)
Q Consensus 233 d~~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pd-tvVGtDSHT~ 311 (902)
... .++..++..++|.++ + |+.+++||+|||||++.| ++.|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~-------------~-Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRN-------------R-GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHH-------------c-CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 455566677777773 1 355799999999998755 66786 5899999999
Q ss_pred ccCcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHH------HHHHh------cCcccEE
Q 002599 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVT------QMLRK------HGVVGKF 379 (902)
Q Consensus 312 ~~GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~------~~Lr~------~G~vgk~ 379 (902)
+..|+ ++|.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|++ .+.+||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 88775 558899999999999999999999999999999999999999999997 44443 3458999
Q ss_pred EEEecCcccCCChhhhhhhhccccccCcceeeeeCCH-HHHHHHHh----------cCCC-----hhHHHHHHHHHHHcc
Q 002599 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVAMVEGYLRANK 443 (902)
Q Consensus 380 VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De-~Tl~YL~~----------tgR~-----~~~~~l~e~y~~~~~ 443 (902)
||| +|+++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +++++.+++|++...
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4543 345678899999888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCC
Q 002599 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (902)
Q Consensus 444 l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~ 522 (902)
+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+ .
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~------------------ 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D------------------ 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C------------------
Confidence 87 4799999999999999999 999999999999999999863 1
Q ss_pred cccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 002599 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 602 (902)
Q Consensus 523 ~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~ 602 (902)
+|++||||||| ++++|++.||.+| +|+++++.||++|+|||++|+++|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 25689999999 7999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 603 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 603 ~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
||||+|+||++.+ .+|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|+
T Consensus 830 PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 830 PGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred CccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 9999999996664 34565 789999999999998 5689999999999999999995
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=5e-55 Score=431.43 Aligned_cols=130 Identities=69% Similarity=1.038 Sum_probs=128.1
Q ss_pred ecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCc
Q 002599 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (902)
Q Consensus 772 ~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~ 851 (902)
+|||+||||||||||+|+++||||+||.++||+++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 852 ~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
+++|||+|++||++++|||||||+|||||||||||||++++|||+||||-
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~ 130 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAE 130 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999984
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=4.1e-47 Score=425.14 Aligned_cols=413 Identities=25% Similarity=0.370 Sum_probs=322.8
Q ss_pred HHHHHHHhcccCC---CCccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002599 160 EDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (902)
Q Consensus 160 ~~vekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (902)
+.++|+..+.-+. ..+..+..+..-|-.||.||+|.-.+|..| +-+|.+ +|+++..+..+..+
T Consensus 374 TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHTAayp 440 (852)
T COG1049 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHTAAYP 440 (852)
T ss_pred cHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhccc---------chhhhhhcccccccC
Confidence 4566666665332 345678888899999999999985444332 234544 35555444332221
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccCCeE-EecCCCCcccC
Q 002599 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMID 314 (902)
Q Consensus 236 ~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~Pdtv-VGtDSHT~~~G 314 (902)
...|-........|-- +++++. ..||.||||.+. +.++.|||| .|+||||.+.=
T Consensus 441 kpvdv~th~~Lp~Fi~-------------~rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfpi 495 (852)
T COG1049 441 KPVDVKTHHTLPDFIM-------------NRGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFPI 495 (852)
T ss_pred CccchhccccchHHHh-------------hcCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccccccc
Confidence 1111111111222222 333444 458899999985 568899985 89999999987
Q ss_pred cccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHH------HHhc------CcccEEEEE
Q 002599 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQM------LRKH------GVVGKFVEF 382 (902)
Q Consensus 315 gLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~------Lr~~------G~vgk~VEF 382 (902)
| ++|+.|+-=++.+.+++.+.|.|||.|.|+++|+++||+|-+|||.+|--. |.+. -..|+++|.
T Consensus 496 G---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi 572 (852)
T COG1049 496 G---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI 572 (852)
T ss_pred c---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe
Confidence 6 467778778888899999999999999999999999999999999887422 3311 236999999
Q ss_pred ecCcccCCChhhhhhhhccccccCcceeeeeCCHH-HHHHHHhc----------CCCh-----hHHHHHHHHHHHccccc
Q 002599 383 HGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKMFV 446 (902)
Q Consensus 383 ~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~-Tl~YL~~t----------gR~~-----~~~~l~e~y~~~~~l~~ 446 (902)
+|+.+|.+++-++++.-++|..|..+.+-.+++ .++||+.. |..+ ..++..|+|+....|+
T Consensus 573 --eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll- 649 (852)
T COG1049 573 --EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL- 649 (852)
T ss_pred --ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc-
Confidence 789999999999999999999999888776555 57899763 4443 3467788999888777
Q ss_pred cCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCccc
Q 002599 447 DYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAE 525 (902)
Q Consensus 447 ~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~ 525 (902)
.+|.+|+|..+|||||++| ||++|+|.+|||+..++++..+
T Consensus 650 ---e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~----------------------------------- 691 (852)
T COG1049 650 ---EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD----------------------------------- 691 (852)
T ss_pred ---CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC-----------------------------------
Confidence 5899999999999999999 8999999999999999987631
Q ss_pred ccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCc--cCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002599 526 LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQ--VKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (902)
Q Consensus 526 l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlk--V~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (902)
.|+-+|||||.. ..-+++++|.+| +|.+ ++ .|++|+|-++...++|.++|+..+|-++|+++.-|
T Consensus 692 ----~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~P 758 (852)
T COG1049 692 ----KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMP 758 (852)
T ss_pred ----ccceeeeehhhc-cchhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhhccceecCC
Confidence 255789999975 367899999998 4444 45 78999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccccCCCCCCcccCCCC
Q 002599 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (902)
Q Consensus 604 GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (902)
||+.|+||.... ++|.. .++|+.|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 759 GCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki--------------- 811 (852)
T COG1049 759 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI--------------- 811 (852)
T ss_pred CcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC---------------
Confidence 999999997543 55665 47899999999999975 5899999999999999998
Q ss_pred CeeeccCCCCChhhHHHHhh
Q 002599 684 KSVYFKDIWPTTEEIAEVVQ 703 (902)
Q Consensus 684 ~~v~l~diwP~~~Ei~~~~~ 703 (902)
|+.||..+++.
T Consensus 812 ---------Pt~eEY~~~v~ 822 (852)
T COG1049 812 ---------PTVEEYMAYVA 822 (852)
T ss_pred ---------CCHHHHHHHHH
Confidence 89999988776
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-34 Score=310.72 Aligned_cols=202 Identities=24% Similarity=0.303 Sum_probs=161.7
Q ss_pred HHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeec
Q 002599 440 RANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSF 519 (902)
Q Consensus 440 ~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~ 519 (902)
++..+|... .+|+.+.|+.+++|..-++.|.+.|..+||+..|+.--.++..... ++ | -.......+.|
T Consensus 16 ~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vt-d~-------i--~a~~~ersL~y 84 (502)
T KOG0454|consen 16 SAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVT-DK-------I--LARASERSLVY 84 (502)
T ss_pred hhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccc-hH-------H--HHhhhhhceee
Confidence 344456543 5899999999999999999999999999999999876443321100 00 0 00111234667
Q ss_pred CCCccc--ccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCcHHHHHhc
Q 002599 520 HGQPAE--LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYLNEQ 596 (902)
Q Consensus 520 ~g~~~~--l~~g~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vk-t~vaPGS~~V~~~l~~~Gll~~L~~a 596 (902)
+|.+.. +.--.++-+|||||||.+.+|++.+|+++ +|.|+.-.+| .+++|||+.|...++.+||.++|.++
T Consensus 85 mGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 85 MGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred ccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 776443 33345778999999999999999999999 9999987777 68999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCccc
Q 002599 597 GFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 669 (902)
Q Consensus 597 Gf~i~~~GCg~CiGn~g~l~~~~~~~i~~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~ 669 (902)
||++...||..|.|+........|.| -+|+|||||||+|.+.++ +|+||.+.+|.++.|+..
T Consensus 159 gF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~ 220 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL 220 (502)
T ss_pred ceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc
Confidence 99999999999999985554555554 489999999999998776 999999999999999864
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=99.94 E-value=1.9e-27 Score=232.69 Aligned_cols=103 Identities=33% Similarity=0.379 Sum_probs=88.8
Q ss_pred ecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCc
Q 002599 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (902)
Q Consensus 772 ~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~ 851 (902)
|+.+|||||||||||+ ||++ |||-+-..+.+| ++..|.+. + +-+..+|+.||+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~--~~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLL--IGAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHh--hhhhhhhc-c-ccccccccCCCc
Confidence 5789999999999996 7998 466666666666 34456654 3 335688999999
Q ss_pred ccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 852 ~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
+++++++|++||+.++|+|||||+||||||||||||+++++|||+||||-
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~ 103 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITK 103 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999984
No 38
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=4.9e-25 Score=241.95 Aligned_cols=420 Identities=14% Similarity=0.068 Sum_probs=294.5
Q ss_pred cHHHHHHHHhcccCCC---CccEEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 002599 158 KKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDV 234 (902)
Q Consensus 158 ~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamr~~~~~~G~dp~~inP~~pv~lviDHsv~~d~ 234 (902)
.|+..++|+++..+.. .+-++...+|-.+.||..+.-+.--+ .++++....+|+|.+ +...+||.+-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 4677788888764421 24456677788888888776654322 233444445666664 5778999765543
Q ss_pred ccchHHHHHhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcccceeeccccceeeecCCCcccC-CeEEecCCCCccc
Q 002599 235 TRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (902)
Q Consensus 235 ~~~~~a~~~n~~~ef~rN~ery~flkw~~~~f~~i~v~ppG~GI~HQV~lE~la~vv~~~~G~~~P-dtvVGtDSHT~~~ 313 (902)
.+ .-....+.++..|-...-.| .|-. +-.+|..-+--.|.||. |+-| .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wre-agcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWRE-AGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehhh-ccccccccCCchhccHH---HHhh------hccCCCccccccccccchhh
Confidence 22 11122233344442222222 3422 22234444433789986 3222 445556 4689999999999
Q ss_pred CcccceecccCHHHHHHHHcCCcEEeecCcEEEEEEeccCCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccCCChh
Q 002599 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (902)
Q Consensus 314 GgLG~lg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~G~vgk~VEF~G~Gv~~LSv~ 393 (902)
++.+.++-|+|+.++..........+++|.++.++|.|+.+.-..++|+++.++...-..+-..+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999998888999999999999999999999999999999888878888899999976655 89999
Q ss_pred hhhhhhccccccCcceeeeeCCHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCC-CCcccEEEEEEcCCccccc
Q 002599 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQ-ERVYSSYLELNLADVEPCI 472 (902)
Q Consensus 394 dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~~~l~e~y~~~~~l~~~~~~~D~-~a~Y~~vieiDLs~veP~V 472 (902)
.|+|||||..|-+-|-+++|.|--|+-|-....++.. . -|+ -|. .+.|...+.+|.+..+|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f----~--------~~~----~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF----Y--------EVA----LDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh----h--------hhe----ecCCchhhccceeccccccceeE
Confidence 9999999999999999999998776666544433321 1 121 122 3678888999999999998
Q ss_pred cCCCCCCCcccccccccchhhhhcccccCCCCCCCcccccceeeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHH
Q 002599 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (902)
Q Consensus 473 AgP~~P~~~v~vse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~aA~ 552 (902)
..|+. ||.-==++ =.|.+|...++|+|+-..-++.|
T Consensus 349 iii~~-DNFGCGSS---------------------------------------REHAPv~L~~~GakaivA~Sya~---- 384 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSS---------------------------------------REHAPVCLGAAGAKAIVAPSYAR---- 384 (502)
T ss_pred EEecc-CCcccccc---------------------------------------cccCcchhhhcccceecchhHHH----
Confidence 88887 54311111 01445677889999999888755
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCChhhhcccc
Q 002599 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTK-----YLLQS---GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTIT 624 (902)
Q Consensus 553 lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~-----~l~~~---Gll~~L~~aGf~i~~~GCg~CiGn~g~l~~~~~~~i~ 624 (902)
+.+|+-++.|++++ +...+.|-.+-++. .+..+ -++.+++..+..=+.|-|..|.++.-+ .+....+
T Consensus 385 IFfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~ 459 (502)
T KOG0454|consen 385 IFFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYAR 459 (502)
T ss_pred HHHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhc
Confidence 56677788999887 33455555543332 12221 255667777776678999999997521 1111122
Q ss_pred CCCeeEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHhcCc
Q 002599 625 DNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (902)
Q Consensus 625 ~~~l~~~~VsS~NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (902)
+ + .+|+|+||||++|||....++|||||.+|+|+++.|+
T Consensus 460 k-e---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 K-E---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred c-c---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2 2 2689999999999999999999999999999999998
No 39
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.87 E-value=2.5e-23 Score=201.35 Aligned_cols=105 Identities=34% Similarity=0.367 Sum_probs=98.0
Q ss_pred hHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCcccchHHHHHHHHhcCCceEEEecC
Q 002599 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (902)
Q Consensus 796 ~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~ 875 (902)
+||+.+|+...++|+|+.||+||++|.|++|.|.++.|.+..+...+.+.+.++++.+++++.+.+|+.++.++||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 58999999999999999999999999999999999999999888888899999999999999999999888889999999
Q ss_pred ccCCCcchhhhhcccccccceEEee
Q 002599 876 EYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 876 nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
|||||||||||||+++++||+||||
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA 107 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIA 107 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEE
T ss_pred cccCCcchHHHHHHHHHhCCeEEEe
Confidence 9999999999999999999999998
No 40
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.75 E-value=2.8e-19 Score=171.41 Aligned_cols=82 Identities=40% Similarity=0.525 Sum_probs=64.0
Q ss_pred ecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeecCCCc
Q 002599 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (902)
Q Consensus 772 ~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~~~g~ 851 (902)
++|||||||||+|++. +||.+ |++.+.|.+.+|.+.+
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~--------------------- 37 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD--------------------- 37 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC---------------------
Confidence 5899999999999972 36665 3455556666776432
Q ss_pred ccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 852 ~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
++++.++|..+ ..|||||+|||||||||||+++++.+|++||||-
T Consensus 38 ----p~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~ 82 (121)
T cd01579 38 ----PTFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAK 82 (121)
T ss_pred ----chHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEc
Confidence 24455666544 5699999999999999999999999999999984
No 41
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=99.74 E-value=5.9e-19 Score=178.64 Aligned_cols=89 Identities=25% Similarity=0.428 Sum_probs=72.4
Q ss_pred ccccEEEEecC-CCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCC
Q 002599 764 VKDAYCLLNFG-DSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (902)
Q Consensus 764 i~~a~vL~~~g-d~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~ 842 (902)
+..++++ ++| |||+||+|+|+ +||+. +++.+|. ++.|..+|+.. ..
T Consensus 6 ~~~G~~~-pl~~dnIDTD~IIP~----------~fLk~--i~~~gl~-------------k~~f~~~r~~~-------Pd 52 (191)
T COG0066 6 KITGRVW-PLGRDNVDTDQIIPK----------RFLKT--ITRTGLG-------------KHLFEDWRYLD-------PD 52 (191)
T ss_pred EEeeeEE-ecCCCCCccccCccH----------HHhcc--cCHhhhh-------------hcccccccccC-------cc
Confidence 3456776 666 99999999998 59998 5788775 55888888432 23
Q ss_pred ceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 843 ~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
|.++.| .||.+. |+|||+|||||||||||+|+++.+|++||||
T Consensus 53 F~~n~~------------~yq~g~---IlVag~NFGcGSSREHApwALk~~Gi~~VIA 95 (191)
T COG0066 53 FVLNVP------------PYQGGD---ILVAGENFGCGSSREHAPWALKDYGIRAVIA 95 (191)
T ss_pred hhhcCC------------ccCCcc---EEEecCCCCCCccHHHHHHHHHHcCeeEEEe
Confidence 556655 677664 9999999999999999999999999999998
No 42
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=99.74 E-value=5.5e-19 Score=175.95 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=64.7
Q ss_pred EEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeec
Q 002599 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (902)
Q Consensus 768 ~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~ 847 (902)
||+ ++||||+||||.|+ +||.. .|.+.|.+..|.+++
T Consensus 2 rv~-~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~----------------- 38 (156)
T TIGR02084 2 KVH-KYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD----------------- 38 (156)
T ss_pred ceE-EcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------
Confidence 555 89999999999998 48864 234556677777664
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 848 ~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
++++++|+.. .|||||+|||||||||||+++++.+||+||||-
T Consensus 39 --------p~f~~~~~~g---~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~ 81 (156)
T TIGR02084 39 --------KDFVKKVKEG---DIIVAGENFGCGSSREHAPIAIKASGISCVIAK 81 (156)
T ss_pred --------hhHHhhcCCC---CEEEccCcccCCCcHHHHHHHHHHhCCCEEEEe
Confidence 2456677654 599999999999999999999999999999983
No 43
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=99.74 E-value=7e-19 Score=176.86 Aligned_cols=82 Identities=32% Similarity=0.429 Sum_probs=65.3
Q ss_pred cEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceee
Q 002599 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (902)
Q Consensus 767 a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~ 846 (902)
+||+ |+||||+||||+|+ +||+.. .|.+-|-+..|.++|
T Consensus 2 grv~-~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~---------------- 40 (166)
T PRK14023 2 ARVW-KFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR---------------- 40 (166)
T ss_pred CceE-EcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC----------------
Confidence 3665 89999999999998 488762 233445566676543
Q ss_pred cCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 847 ~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
++++.+|++. .|||||+|||||||||||+++++.+|++||||-
T Consensus 41 ---------p~f~~~~~~g---~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~ 83 (166)
T PRK14023 41 ---------PEFASTVRPG---DILVAGRNFGLGSSREYAPEALKMLGIGAIIAK 83 (166)
T ss_pred ---------hhhHhhcCCC---CEEEccCcccCCccHHHHHHHHHHHCCCEEEEe
Confidence 2455678765 599999999999999999999999999999983
No 44
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=99.73 E-value=1e-18 Score=175.28 Aligned_cols=81 Identities=31% Similarity=0.415 Sum_probs=64.5
Q ss_pred cEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceee
Q 002599 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (902)
Q Consensus 767 a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~ 846 (902)
.||+ |+||||+||||+|+ +||+. . |.+.|.+..|.++|
T Consensus 2 grv~-~~gdnIdTD~I~P~----------~~l~~--~-------------~~~~l~~~~f~~~~---------------- 39 (163)
T PRK00439 2 GRVW-KFGDNIDTDVIIPA----------RYLNT--S-------------DPQELAKHCMEDLD---------------- 39 (163)
T ss_pred CeEE-EeCCCCchhhCChH----------HHhCC--C-------------CHHHHHHHHhccCC----------------
Confidence 4676 89999999999998 48876 2 33446677787765
Q ss_pred cCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 847 ~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
++++.+++.. .|||||+||||||||||||++++.+|++||||-
T Consensus 40 ---------p~f~~~~~~g---~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~ 82 (163)
T PRK00439 40 ---------PEFAKKVKPG---DIIVAGKNFGCGSSREHAPIALKAAGVSAVIAK 82 (163)
T ss_pred ---------cchHhhcCCc---eEEEeCCcccCCccHHHHHHHHHHHCCCeEEEe
Confidence 1344455543 599999999999999999999999999999983
No 45
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=99.72 E-value=1.4e-18 Score=172.82 Aligned_cols=80 Identities=30% Similarity=0.415 Sum_probs=63.8
Q ss_pred EEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCceeec
Q 002599 768 YCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHV 847 (902)
Q Consensus 768 ~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t~~~ 847 (902)
||+ ++||||+||||.|+ +||+. ++ .|-|.+..|.+++
T Consensus 2 rv~-~~gdnIdTD~IiP~----------~~l~~--~~-------------~~~l~~~~f~~~~----------------- 38 (154)
T TIGR02087 2 RVW-KFGDDIDTDEIIPG----------RYLRT--TD-------------PDELASHAMEGID----------------- 38 (154)
T ss_pred ceE-EcCCCcchhhCcHH----------HHhCc--CC-------------HHHHHhhccCcCC-----------------
Confidence 565 89999999999998 49865 23 3445566776664
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 848 PTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 848 ~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
++++.+.+.. .|||||+|||||||||||+++++.+|++||||-
T Consensus 39 --------p~f~~~~~~g---~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~ 81 (154)
T TIGR02087 39 --------PEFAKKVRPG---DVIVAGKNFGCGSSREQAALALKAAGIAAVIAE 81 (154)
T ss_pred --------chhhhcCCCC---cEEEcCCcccCCccHHHHHHHHHHhCCCEEEee
Confidence 2445556653 599999999999999999999999999999984
No 46
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.67 E-value=1.3e-17 Score=172.15 Aligned_cols=94 Identities=24% Similarity=0.390 Sum_probs=71.8
Q ss_pred cccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCC-c
Q 002599 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP-K 843 (902)
Q Consensus 765 ~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~-~ 843 (902)
..++++...||||+||+|+|+. ||+. +++++ +-++.|.++|+... |..++ |
T Consensus 7 i~G~~~~l~~dnIDTD~IiPa~----------fl~~--~~~~~-------------l~~~~f~~~r~~~~---~~~~p~F 58 (200)
T PRK01641 7 HTGLAVPLDRANVDTDQIIPKQ----------FLKR--ITRTG-------------FGKGLFDDWRYLDD---GQPNPDF 58 (200)
T ss_pred EEEEEEEcCCCCCChhhcchHh----------HcCc--CCHHH-------------HHHhhhcccccccc---CCCCCCc
Confidence 3478887679999999999985 8876 24444 55778999986433 22222 3
Q ss_pred eeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 844 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 844 t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
.++. ++|+... |||||+|||||||||||+|+++.+||+||||-
T Consensus 59 ~ln~------------~~~~~~~---IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~ 101 (200)
T PRK01641 59 VLNQ------------PRYQGAS---ILLAGDNFGCGSSREHAPWALADYGFRAVIAP 101 (200)
T ss_pred cccc------------cccCCCe---EEEcCCcccCCCcHHHHHHHHHHcCCCEEEec
Confidence 3333 3777654 99999999999999999999999999999983
No 47
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.65 E-value=2e-17 Score=169.24 Aligned_cols=95 Identities=24% Similarity=0.325 Sum_probs=71.7
Q ss_pred ccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCC-CCC-
Q 002599 764 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNG-EVG- 841 (902)
Q Consensus 764 i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~-~~g- 841 (902)
...+|++..-||||+||+|+|+ +||+. +++.+ +-++.|.++|+.+. .| ...
T Consensus 6 ~~~G~~~~l~~dnIDTD~IiP~----------rfl~~--~~~~~-------------l~~~~f~~~R~~~~--~g~~~~p 58 (188)
T TIGR00171 6 SHTGLVAPLDAANVDTDAIIPK----------QFLKR--ITRTG-------------FGKHLFFDWRFLDA--NGKEPNP 58 (188)
T ss_pred EEEEEEEECCCCcCcHhhhhHH----------HHhCc--CCHHH-------------HHHhcccccccccc--ccCCCCc
Confidence 4567887555999999999998 49977 34444 44678999986421 11 111
Q ss_pred CceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 842 ~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
.|.+|. ..|+... |||||+|||||||||||+|+++.+||+||||
T Consensus 59 ~F~ln~------------~~~~~~~---IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA 102 (188)
T TIGR00171 59 DFVLNQ------------PQYQGAS---ILLARENFGCGSSREHAPWALDDYGFKVIIA 102 (188)
T ss_pred chhhcc------------cccCCCc---EEEcCCcccCCCcHHHHHHHHHHcCCCEEEe
Confidence 144443 3677754 9999999999999999999999999999998
No 48
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=99.65 E-value=4.7e-17 Score=171.42 Aligned_cols=94 Identities=28% Similarity=0.320 Sum_probs=66.1
Q ss_pred CccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCc---hhhhccccccchhhhhhccCCC
Q 002599 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGN---DEVMARGTFANIRLVNKLLNGE 839 (902)
Q Consensus 763 ~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN---~evM~rgtF~nir~~n~~~~~~ 839 (902)
....+||+ |+||||+||||+|++ ||+.. ++| .+.+-+..|..++ ..
T Consensus 67 ~~~~Grv~-k~gDNIdTD~IiPa~----------~l~~~-------------~sn~~~~~~l~~~~F~~l~-~~------ 115 (246)
T PLN00072 67 TTFHGLCF-VVGDNIDTDQIIPAE----------YLTLV-------------PSKPDEYEKLGSYALIGLP-AF------ 115 (246)
T ss_pred CeEEEeEE-EeCCCcchhhcccHH----------Hhccc-------------cccCCCHHHHHHhhhccCC-cc------
Confidence 34468996 899999999999996 88763 222 4556667776663 00
Q ss_pred CCCceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 840 VGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 840 ~g~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
.+......|+.. .. -.|||||+|||||||||||+|+++.+||+||||-
T Consensus 116 --~~~r~v~~Gd~~----------~~--~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~ 163 (246)
T PLN00072 116 --YKTRFVEPGEMK----------TK--YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAE 163 (246)
T ss_pred --hhhcccCCCCCC----------CC--ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEEC
Confidence 011111122211 11 1599999999999999999999999999999983
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.57 E-value=9.6e-16 Score=139.43 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=31.6
Q ss_pred eEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 869 TIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 869 ~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
+|||||+|||||||||||+|+++++|+++|||.
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~ 49 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAK 49 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEe
Confidence 599999999999999999999999999999984
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.56 E-value=6.9e-16 Score=148.26 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCceEEEecCccCCCcchhhhhcccccccceEEee
Q 002599 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWP 900 (902)
Q Consensus 857 ~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa 900 (902)
+++.+.+.. .|||+|+|||||||||||+++++.+||+||||
T Consensus 38 ~f~~~v~~g---dilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA 78 (129)
T cd01674 38 EFSTKTKQG---DILVSGFNFGTGSSREQAATALLAKGIPLVVS 78 (129)
T ss_pred hhhhcCCCC---CEEEeCCccCCCCcHHHHHHHHHHcCccEEEe
Confidence 556666654 49999999999999999999999999999998
No 51
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.56 E-value=7.9e-16 Score=140.84 Aligned_cols=33 Identities=30% Similarity=0.280 Sum_probs=31.6
Q ss_pred eEEEecCccCCCcchhhhhcccccccceEEeec
Q 002599 869 TIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 869 ~iivaG~nyG~GSSRe~Aa~~~~~lGv~aVIa~ 901 (902)
.|||+|+|||||||||||+|+++++|+++|||.
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~ 51 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAE 51 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEc
Confidence 599999999999999999999999999999984
No 52
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.34 E-value=5.2e-13 Score=129.69 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=29.3
Q ss_pred EEEecCccCCCcchhhhhcccc------------cccceEEee
Q 002599 870 IILAGAEYGSGSSRDWAAKGPM------------LLVSLFIWP 900 (902)
Q Consensus 870 iivaG~nyG~GSSRe~Aa~~~~------------~lGv~aVIa 900 (902)
|+|+|+|||||||||||+++++ .+|++||||
T Consensus 53 ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia 95 (131)
T cd01576 53 VAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLG 95 (131)
T ss_pred EEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEe
Confidence 9999999999999999999997 779999997
No 53
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.26 E-value=3.7e-12 Score=152.67 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=61.2
Q ss_pred CCccccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCC
Q 002599 762 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841 (902)
Q Consensus 762 ~~i~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g 841 (902)
++-..++| +|+||+|+|||||||+ |+.. |.|.+...+..|.+.+
T Consensus 163 ~~~i~g~V-~KvgdnInTD~I~Pa~----------~~~~--------------Rsdipl~a~~~~e~~~----------- 206 (835)
T PRK09238 163 PEKITVTV-FKVTGETNTDDLSPAP----------DAWS--------------RPDIPLHALAMLKNRR----------- 206 (835)
T ss_pred ccccEEEE-EEeCCCCchhccCCcc----------cccc--------------CCCHHHHHHHhccCCC-----------
Confidence 34446888 5999999999999997 6644 3444544444443331
Q ss_pred CceeecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhccc------------ccccceEEee
Q 002599 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP------------MLLVSLFIWP 900 (902)
Q Consensus 842 ~~t~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~------------~~lGv~aVIa 900 (902)
| .+.+.+++++..|. .|+|+|+|||||||||||++++ ...+.++|||
T Consensus 207 ------p-----~f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa 265 (835)
T PRK09238 207 ------P-----GPIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLG 265 (835)
T ss_pred ------C-----cHHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEe
Confidence 1 12333443333442 3899999999999999999995 3333599997
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=98.90 E-value=8.8e-10 Score=132.32 Aligned_cols=87 Identities=22% Similarity=0.154 Sum_probs=58.2
Q ss_pred cccEEEEecCCCcccCcccCCCCCCCCChHHhHHHhhCCCccccccccCCCCchhhhccccccchhhhhhccCCCCCCce
Q 002599 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (902)
Q Consensus 765 ~~a~vL~~~gd~itTDhIsPAg~i~~~s~a~~yL~~~G~~~~~~nsygsrRgN~evM~rgtF~nir~~n~~~~~~~g~~t 844 (902)
..++|+ |+||+|+||+||||. ||..| .+.+.+.+..|.+.+ ++ +
T Consensus 167 i~g~V~-k~gddinTD~i~Pa~----------~a~sr--------------~D~~~~a~~m~~~~~---------p~-~- 210 (844)
T TIGR00117 167 ITVTVF-KVTGETNTDDLSPAP----------DAWTR--------------PDIPLHALAMLKNAR---------EG-I- 210 (844)
T ss_pred eEEEEE-EeCCCCchhccCChh----------hhhcC--------------CCHHHHHHHHhhcCC---------cc-H-
Confidence 347887 999999999999985 88764 222222222222221 11 0
Q ss_pred eecCCCcccchHHHHHHHHhcCCceEEEecCccCCCcchhhhhccc-------------ccccceEEee
Q 002599 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLVSLFIWP 900 (902)
Q Consensus 845 ~~~~~g~~~~i~~~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~-------------~~lGv~aVIa 900 (902)
...+ .+-++.|.| |+|+|+|||||||||||..++ +.+| .+|||
T Consensus 211 ----------~~~i-~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via 266 (844)
T TIGR00117 211 ----------EPQI-EALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLG 266 (844)
T ss_pred ----------HHHH-HHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEe
Confidence 0111 122344433 889999999999999999999 9999 99997
No 55
>PLN00094 aconitate hydratase 2; Provisional
Probab=97.66 E-value=5e-05 Score=92.48 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=34.2
Q ss_pred HHHHHhcCCceEEEecCccCCCcchhhhhccc-------------ccccceEEee
Q 002599 859 AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLVSLFIWP 900 (902)
Q Consensus 859 a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~-------------~~lGv~aVIa 900 (902)
-+..|+.|.| |+|+|+|||||||||||..++ +-.|+.+ ||
T Consensus 285 i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia 337 (938)
T PLN00094 285 IEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IG 337 (938)
T ss_pred HHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-ee
Confidence 3467888877 567799999999999999999 9999998 65
No 56
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.79 E-value=0.025 Score=65.17 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=59.6
Q ss_pred cEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002599 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (902)
Q Consensus 530 ~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (902)
+|+.++|| |=--|++.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 46677775 7888899999999999 89999999988776 578899999999999999999999997655
No 57
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.12 E-value=0.23 Score=56.59 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=57.3
Q ss_pred cEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002599 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (902)
Q Consensus 530 ~V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (902)
.++.++|| |---|.+.++..|.+| +|++-++.+.++|+ -|++|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 45567776 7777899999999999 88887887877665 689999999999999999999999997554
No 58
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=88.76 E-value=0.91 Score=52.47 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=56.4
Q ss_pred EEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002599 531 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (902)
Q Consensus 531 V~~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiG 610 (902)
+++++| .|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 57788899999999999 89877767776665 466676 89999999999999999997777 663
No 59
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=88.66 E-value=0.2 Score=52.45 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHhcCCceEEEecCccCCCcchhhhhccc
Q 002599 858 AAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (902)
Q Consensus 858 ~a~~y~~~~~p~iivaG~nyG~GSSRe~Aa~~~ 890 (902)
.-++.|+.|.|++.| |.--|.||||--|.-..
T Consensus 45 ~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSv 76 (204)
T PF06434_consen 45 QIEELKEKGHPLAYV-GDVVGTGSSRKSATNSV 76 (204)
T ss_dssp HHHHHHTTSS-EEEE-EEEEEES---THHHHHH
T ss_pred HHHHHHHcCCcEEEe-cCccccCcccchhhhhh
Confidence 345678889898877 88899999999886544
No 60
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=31.51 E-value=37 Score=31.32 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.2
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002599 535 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (902)
Q Consensus 535 ~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (902)
+|++|..+.-.. .+||+.|.|.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 689999997666 4588899999999999887
No 61
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.44 E-value=57 Score=32.42 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=27.5
Q ss_pred EEEeccCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002599 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (902)
Q Consensus 533 ~a~IGSCTN~s~~dl~~aA~lLak~A~~kGlkV~ 566 (902)
+++||+|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6799999999655555 78888899999999888
No 62
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=24.45 E-value=48 Score=33.02 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=21.7
Q ss_pred CCCChhhhccc---cCCCeeEEEeeccCCCC
Q 002599 613 GDLDESVASTI---TDNDIVAAAVLSGNRNF 640 (902)
Q Consensus 613 g~l~~~~~~~i---~~~~l~~~~VsS~NRNF 640 (902)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56777776666 45577888899999999
Done!