Query 002599
Match_columns 902
No_of_seqs 335 out of 2710
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 15:46:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002599.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1319-1322//hhsearch_pdb/002599hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 1976.2 53.5 795 103-901 2-797 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1367.4 49.6 613 158-901 34-661 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 857.2 39.6 448 135-710 343-838 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 234.2 -9.5 204 638-900 47-275 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 193.7 4.9 113 747-901 4-119 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 156.3 2.6 82 766-901 4-85 (170)
7 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 155.4 1.7 96 763-901 8-106 (203)
8 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 154.8 1.8 81 767-901 5-85 (163)
9 3vba_A Isopropylmalate/citrama 1.0 1 1 152.2 2.8 84 764-901 4-87 (176)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 151.7 3.8 91 763-901 8-98 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=1976.22 Aligned_cols=795 Identities=61% Similarity=1.046 Sum_probs=758.6
Q ss_pred CCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 94255203433899974003650689999898889815633011110014875440999999981005899841796302
Q 002599 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (902)
Q Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~~~p 182 (902)
+||++.+++|...+ +.++||+|++++...+++|||||||||||+||||||+.+++++|+++++|..+...+.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CCHHHHHCCCCCCC--CEEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 82045433267889--6269998477263323108832999998887505786336999999965434689897788964
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43453058627799989999999999099987437888879994699887976626799972599999954312144201
Q 002599 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (902)
Q Consensus 183 drVl~qD~TG~paivdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~RN~Ery~fLkw~ 262 (902)
|||++||+||+|+++||++||++++++|.||.|+||.+|+++++||+||++.++..+|..+|+.++|+||.|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 47887746357899999998999986199843337788706995799876776654779999999999852157778988
Q ss_pred CCCCCCCEEECCCCCCCCEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECC
Q ss_conf 22356511418999610001011011055317995357817723888765574431103568799999991790785558
Q 002599 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (902)
Q Consensus 263 ~~~f~ni~vvppG~GI~HQVnlE~la~vv~~~~G~~~PdtiVGTDSHTtm~GglGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (902)
+++|+||+|+|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|+|++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCC
T ss_conf 97644878889998880654253415542125761136728856887655674405897468899999995590760489
Q ss_pred CEEEEEEECCCCCCCCHHCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 18999996207999993308999999999658420799995596667992222335114632386041120777899999
Q 002599 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (902)
Q Consensus 343 evVgV~LtG~L~~gVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 422 (902)
+||||+|+|+|++|||+|||||+|+++||++|++||||||+|||+++||++||||||||++|||||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
T ss_conf 78899997048989465689999999966388555599994673254661210105302265497057856838899999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 760999157999999999800012389999-9985227999985874100138999997422565520036431054467
Q 002599 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (902)
Q Consensus 423 ~~tgR~~~~i~lve~y~ka~~l~~~~~~~D-~~a~Y~~vieiDLS~ieP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~ 501 (902)
+.|||++++++++|+|++++++|++.. +| ++|+|+++++||||+|||+||||++|||+++|++++.+|.+++..+++.
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 864984677877899999899875348-8878984679999871005574128899330008677223477765211223
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 78788821112201330289754346876899972158899985799999999999986698348862189943859999
Q 002599 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (902)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dlm~AA~lLak~A~~~GlkV~p~VktsvaPgS~~V~ 581 (902)
+|+....+.+...++++++|++++|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred CCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
T ss_conf 44453200102451241189502236886889998068789857799999999999986699779985399968989999
Q ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH
Q ss_conf 99998592799984694993357533437999997100012467971687862157777898789888527349899999
Q 002599 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (902)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V~SgNRNF~GRigp~~~~~YLASP~lVaA 661 (902)
+||+++|++++|+++||.|++|||++||||+++++++++++|.+||+++++|+|+||||+||||+..++||||||++|||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHH
T ss_conf 99998396999997698996788741037878877303433204871489995267786767898765557558999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97607454588889865589997232347999916689874215784210112232358996655556788875324999
Q 002599 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPN 741 (902)
Q Consensus 662 ~ALaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 741 (902)
|||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|++++.+++.|+.++++++++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98607311365458655588998300235688635568998722898774444301357750013577888875466887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 84102899988788999998886563898763998554730479988999957768876087843345456777860120
Q 002599 742 STYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVM 821 (902)
Q Consensus 742 styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm 821 (902)
||||++||||++|+..|++++++.++++|+++|||||||||||||+|+++||||+||+++|+.+++|||||+||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHH
T ss_conf 65245899866555678886663375799971687661546667665678878999986499857712412234677777
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 01122420112100389779921321799522257899987835992099966854799540132005333554599633
Q 002599 822 ARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 822 ~RgtFan~r~~n~~~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
+||||+|+|+.|+|++ .+|++|+|+|+|+.+++||++++|+++|+++|||||+|||||||||||||+++++|||||||-
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 797 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred HHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEH
T ss_conf 5412233433232344-458722436998626626568988754985699898777887537899999998193299971
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1367.41 Aligned_cols=613 Identities=30% Similarity=0.461 Sum_probs=542.6
Q ss_pred CHHHHHHHHHCCCCCC------C-CCEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 0999999981005899------8-41796302434530586277999899999999990999874378888799946998
Q 002599 158 KKEDVEKIIDWENSAP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSV 230 (902)
Q Consensus 158 ~~~~vekil~~~~~~~------~-~~eI~~~pdrVl~qD~TG~paivdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv 230 (902)
.+|+.|||++.+.... . +.+|.++|||+++||+||++++++|++| |.++ +..|.++++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHH-------CCCC----CCCCCCEECCCCC
T ss_conf 9789999999975785444426999789998338988525308999999980-------9998----8898764348987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEECCCCCEEEECCCCCCCCC-EEEECCCC
Q ss_conf 87976626799972599999954312144201223565114189996100010110110553179953578-17723888
Q 002599 231 QVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 309 (902)
Q Consensus 231 ~~d~~~~~~A~~~n~~~ef~RN~Ery~fLkw~~~~f~ni~vvppG~GI~HQVnlE~la~vv~~~~G~~~Pd-tiVGTDSH 309 (902)
|++..+.. ++..++.+|.|+|.||+|.+++| |++|+|||+||||||++|+ +++|+ ++||||||
T Consensus 103 ~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCCC
T ss_conf 77777664-----35554365799999999999977-9779899988507370303----------13799678658887
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCHHCHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 76557443110356879999999179078555818999996207999993308999999999658420799995596667
Q 002599 310 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGE 389 (902)
Q Consensus 310 Ttm~GglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~gVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~~ 389 (902)
|||+||||+|||||||+|++++|+||+|||++|+||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 77656224314456789999998288654027868999996116989667899999988853288414899997773154
Q ss_pred CCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99222233511463238604112077789999976099915799999999980001238999999852279999858741
Q 002599 390 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVE 469 (902)
Q Consensus 390 LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~i~lve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLS~ie 469 (902)
||+++|||||||++|+|||+|+||+|++|++||+.++|++ .++++++|.+ +| .+|++|.|+++++||||+||
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~le 318 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELK 318 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCC
T ss_pred CCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCCC
T ss_conf 7710023354046653852030057489999998659837-8899999986---43----58999955699999822100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 00138999997422565520036431054467787888211122013302897543468768999721588999857999
Q 002599 470 PCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVML 549 (902)
Q Consensus 470 P~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dlm~ 549 (902)
|+||+|++|||++++++++..+.+ ++++ -+|+||||||||||||+| |.
T Consensus 319 P~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~D-l~ 366 (753)
T 1c96_A 319 PHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYED-MG 366 (753)
T ss_dssp CEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHH-HH
T ss_pred EEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHH-HH
T ss_conf 242279997554186885456763--------------------------5886-----415799981578998799-99
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 99999999986698348862189943859999999985927999846949933575334379999971000124679716
Q 002599 550 GAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIV 629 (902)
Q Consensus 550 AA~lLak~A~~~GlkV~p~VktsvaPgS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~ 629 (902)
+|+.++|+|+++|++ +.||++|+|||++|++||+++||+++|+++||.|++|||++||||+++.. ++. .+++
T Consensus 367 ~AA~ilkga~~~~v~--~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~-- 438 (753)
T 1c96_A 367 RSAAVAKQALAHGLK--CKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN-- 438 (753)
T ss_dssp HHHHHHHHHHTTTCC--CSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE--
T ss_pred HHHHHHCCHHHCCCC--CCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC--
T ss_conf 999996057656999--88508996998999999998584999997696995688506236888755--566--7762--
Q ss_pred EEEEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf 8786215777789878-988852734989999997607454588889865589997232347999916689874215784
Q 002599 630 AAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLP 708 (902)
Q Consensus 630 ~~~V~SgNRNF~GRig-p~~~~~YLASP~lVaA~ALaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~ 708 (902)
++|+|+||||+|||| ...+.+|||||++||||||+|+|+||+.+||| .+++|++|||+| |+.+|+++
T Consensus 439 -~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~-------- 506 (753)
T 1c96_A 439 -TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR-------- 506 (753)
T ss_dssp -EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------
T ss_pred -EEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH--------
T ss_conf -278605678444557899872365589999999973976468000535-577897033149--96200046--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 210112232358996655556788-8753249998410289998878899999888656389876399855473047998
Q 002599 709 DMFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGS 787 (902)
Q Consensus 709 ~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPag~ 787 (902)
++|. .+++.|+.++.+. +..|.|+++||||+.||||++ ++..++.++++|+++||+||||||||||
T Consensus 507 ~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG- 573 (753)
T 1c96_A 507 AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG- 573 (753)
T ss_dssp SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG-
T ss_pred HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCC-
T ss_conf 5426-------78633326899887612752898755567998888-----8765533543787326875556605664-
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCC--CCCCC---CEEECCCCCCCCHHHHHHHH
Q ss_conf 89999577688760878433454567778601200112242011210038--97799---21321799522257899987
Q 002599 788 IHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP---KTVHVPTGEKLSVFDAAMKY 862 (902)
Q Consensus 788 i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~--~~~g~---~t~~~p~g~~~~i~~aa~~y 862 (902)
+||++ ||+|+|++ .|.|.. +.+++ +++|+|+|+.+++||+|++|
T Consensus 574 --------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y 622 (753)
T 1c96_A 574 --------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYY 622 (753)
T ss_dssp --------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHH
T ss_pred --------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf --------34301----------------------66554411-332206643457876614773587413657799999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 835992099966854799540132005333554599633
Q 002599 863 KSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 863 ~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
+++++++|||||+|||||||||||||++++|||+||||-
T Consensus 623 ~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~ 661 (753)
T 1c96_A 623 KQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITK 661 (753)
T ss_dssp HHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred HHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEH
T ss_conf 973797399955767887526777765787475699864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=857.22 Aligned_cols=448 Identities=23% Similarity=0.337 Sum_probs=380.2
Q ss_pred CCCCCEEEEEHHHHHCCCCC---------------CCCCHHHHHHHHHCCCCC---CCCCEEEEECCEEEEECCCCHHHH
Q ss_conf 88981563301111001487---------------544099999998100589---984179630243453058627799
Q 002599 135 EKLPYSIRILLESAIRNCDN---------------FQVKKEDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAV 196 (902)
Q Consensus 135 ~~lP~sirillE~~~R~~~~---------------~~~~~~~vekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~pai 196 (902)
..+||-++-.|-...|..-| ..-.+|++|||++++.+. ..+..|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 98999999999909998743788887999469988797662679997259999995431214420122356511418999
Q 002599 197 VDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS 276 (902)
Q Consensus 197 vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~RN~Ery~fLkw~~~~f~ni~vvppG~ 276 (902)
|++++++|.+ +++++. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CCCCEEECCCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCC
Q ss_conf 61000101101105531799535781-77238887655744311035687999999917907855581899999620799
Q 002599 277 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHN 355 (902)
Q Consensus 277 GI~HQVnlE~la~vv~~~~G~~~Pdt-iVGTDSHTtm~GglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~LtG~L~~ 355 (902)
|||||++.| +++||+ +|||||||||+||+|+ |.|+.|++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Glg~---g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGISF---PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSEEC---CCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEECC-----------CCCCCCEEEECCCCCCCCCCCEE---CCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 521034135-----------02046369827988662235320---7627999999970966504797789999702798
Q ss_pred CCCHHCHHHHHHHHHHHCC------------CCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECC-HHHHHHH
Q ss_conf 9993308999999999658------------42079999559666799222233511463238604112077-7899999
Q 002599 356 GVTATDLVLTVTQMLRKHG------------VVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 422 (902)
Q Consensus 356 gVtakDivL~i~~~Lr~~G------------vvgk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~Fp~D-e~Tl~YL 422 (902)
|||+|||||+|++.++++| ++||+||| +|+++||+++|+|||||++|+|||+|+||+| +.|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 76----------0999-----1579999999998000123899999985227999985874-100138999997422565
Q 002599 423 KL----------TGRS-----DETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKE 486 (902)
Q Consensus 423 ~~----------tgR~-----~~~i~lve~y~ka~~l~~~~~~~D~~a~Y~~vieiDLS~i-eP~VAgP~~P~~~v~lse 486 (902)
+. +||+ +++++.++.|++++++| .+|++|+|+++++||||+| ||+||+|++|||++++++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHH
T ss_conf 86334333331048752011789999999987416500----36899847899999711377887638998475466255
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 52003643105446778788821112201330289754346876899972158899985799999999999986698348
Q 002599 487 MKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (902)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dlm~AA~lLak~A~~~GlkV~ 566 (902)
+++. .|+++|||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred HCCC---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCC
T ss_conf 3303---------------------------------------1016999358899-89999999997------276668
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 86218994385999999998592799984694993357533437999997100012467971687862157777898789
Q 002599 567 PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHP 646 (902)
Q Consensus 567 p~VktsvaPgS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V~SgNRNF~GRigp 646 (902)
+.|+++|+|||++|++||+++|++++|+++||.|.+||||+||||++.+ .++++ +++|+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCC--------CCCCE---EEECCCCCCCCCCCC
T ss_conf 9989799798999999999858499999759789378550265838867--------99998---996688687777788
Q ss_pred CCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 8885273498999999760745458888986558999723234799991668987421578421
Q 002599 647 LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDM 710 (902)
Q Consensus 647 ~~~~~YLASP~lVaA~ALaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~ 710 (902)
. ..+|||||++||||||+|+| |+.+|+.+++...++|+.
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~ 838 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAV 838 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHH
T ss_pred C-CCEEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCC
T ss_conf 7-50677799999999967868------------------------988999999986228744
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=234.21 Aligned_cols=204 Identities=19% Similarity=0.198 Sum_probs=152.6
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCHHHHH----HHHHC-C
Q ss_conf 7778987898------885273498999999760745458888986558999723-2347999916689----87421-5
Q 002599 638 RNFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV-YFKDIWPTTEEIA----EVVQS-S 705 (902)
Q Consensus 638 RNF~GRigp~------~~~~YLASP~lVaA~ALaG~I~~d~~~eplg~~~~G~~v-~l~diwP~~~ei~----~~~~~-~ 705 (902)
.-|+.|+.|. ++++||+|+ |.+++..+.|+.++.+++||+...|..| +|.||| +++|++ +.+.. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 78421011223235899665555678887532499984102899988788999998886563898763998554730479
Q 002599 706 VLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPA 785 (902)
Q Consensus 706 v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTDhIsPa 785 (902)
+..++|.+.|+....||+.|+.+ +|.|.+.+-+..+|+. .....++++ +++|||+|||||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~-----------~~~i~g~v~-~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL-----------AEKLTVTVF-KVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC-----------CSCEEEEEE-EEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCC-----------CCEEEEEEE-ECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------8731143200258887-----------853899999-65897754030766
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHC
Q ss_conf 98899995776887608784334545677786012001122420112100389779921321799522257899987835
Q 002599 786 GSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSA 865 (902)
Q Consensus 786 g~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~ 865 (902)
+ ||..+ .++..| -+..|.+.| ..+-++ |..+ ..+ +...++++..
T Consensus 186 ~----------~l~~~-~d~~~~-------------a~~lf~~~r--~~~~p~----f~~~-----~~~-~~~i~~~~~~ 229 (865)
T 1l5j_A 186 P----------DAWSR-PDIPLH-------------ALAMLKNAR--EGIEPD----QPGV-----VGP-IKQIEALQQK 229 (865)
T ss_dssp G----------GGGGT-TSHHHH-------------GGGTTCSCB--TTBCCS----BTTT-----BCS-HHHHHHHHTT
T ss_pred H----------HHHCC-CCHHHH-------------HHHHHHCCC--CCCCCC----CCCC-----CCC-HHHHHHHHCC
T ss_conf 5----------63218-997999-------------999721123--589832----1233-----560-4444565349
Q ss_pred CCCEEEEECCCCCCCCCHHHHHCCC-------------CCCCCEEEEE
Q ss_conf 9920999668547995401320053-------------3355459963
Q 002599 866 GHGTIILAGAEYGSGSSRDWAAKGP-------------MLLVSLFIWP 900 (902)
Q Consensus 866 ~~p~iivaG~nyG~GSSRe~Aak~~-------------~llGv~aVia 900 (902)
|. .|+|+|+|||||||||||+|++ +.+| +||||
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA 275 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLG 275 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEE
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEE
T ss_conf 98-799979835268645889999998715777687464428-85996
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=193.74 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 899988788999998886--563898763998554730479988999957768876087843345456777860120011
Q 002599 747 EPPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARG 824 (902)
Q Consensus 747 ~pp~f~~~~~~~~~~~~i--~~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~Rg 824 (902)
-.|||++|.+.....+.+ ..++++.+.|||||||||||| +||+. +.+.+ |.++
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHH-------------HHHH
T ss_conf 56655873015556888138999999928987784222669----------88673--89878-------------8888
Q ss_pred CCCCHHHHHHCCCCCCCC-CEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 224201121003897799-21321799522257899987835992099966854799540132005333554599633
Q 002599 825 TFANIRLVNKLLNGEVGP-KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 825 tFan~r~~n~~~~~~~g~-~t~~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
+|+|+|+.|+ +|.+++ |+.+.+ +|+. +.|||||+|||||||||||+|+++++||+||||-
T Consensus 59 ~f~~~r~~~~--~g~~~p~f~~~~~------------~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~ 119 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPDFIFNQP------------EYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAG 119 (213)
T ss_dssp TTHHHHBSST--TCCBCTTSGGGSG------------GGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEES
T ss_pred HHHCCCCCCC--CCCCCCCCCCCCH------------HHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 7533402255--8887987011513------------3058---7289935888999777999999998487589975
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=156.31 Aligned_cols=82 Identities=29% Similarity=0.366 Sum_probs=63.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEE
Q ss_conf 63898763998554730479988999957768876087843345456777860120011224201121003897799213
Q 002599 766 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTV 845 (902)
Q Consensus 766 ~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~g~~t~ 845 (902)
.++++ ++|||||||||+||. ||.. .|.+.+.+.+|.++|
T Consensus 4 ~g~v~-~~~dnIdTD~IiPa~----------~l~~---------------~~~~~l~~~~f~~~~--------------- 42 (170)
T 2pkp_A 4 KGRAH-KFGDDVDTDAIIPGP----------YLRT---------------TDPYELASHCMAGID--------------- 42 (170)
T ss_dssp EEEEE-ECCSCCBHHHHSCGG----------GGSC---------------CCHHHHHTTTTTTTC---------------
T ss_pred EEEEE-ECCCCCCHHHCCHHH----------HHCC---------------CCHHHHHHHHCCCCC---------------
T ss_conf 99999-779988855447277----------7587---------------998999997566678---------------
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 21799522257899987835992099966854799540132005333554599633
Q 002599 846 HVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 846 ~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
++++.+++. .+|||||+|||||||||||||+++++||+||||-
T Consensus 43 ----------p~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 85 (170)
T 2pkp_A 43 ----------ENFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAK 85 (170)
T ss_dssp ----------TTHHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEES
T ss_pred ----------CCHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf ----------745773788---8789936877898788999999998587399973
No 7
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=155.41 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCC--
Q ss_conf 865638987639985547304799889999577688760878433454567778601200112242011210038977--
Q 002599 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEV-- 840 (902)
Q Consensus 763 ~i~~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~-- 840 (902)
....++++.+-+|||+||+|+|+ +||+. +.+..|. +..|.++|+... |.+
T Consensus 8 ~~~~G~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~lg-------------~~~f~~~R~~~~---g~~~~ 59 (203)
T 3q3w_A 8 IIHKGIACPLEYANIDTDQIIPK----------QFLLA--VSKQGFG-------------KHLFHDLRYLDD---KESVL 59 (203)
T ss_dssp SEEEEEEEEECCSSCBHHHHSCG----------GGCBS--SCSSCSG-------------GGTTHHHHBSSS---SSCSB
T ss_pred EEEEEEEEECCCCCCCHHHCCHH----------HHCCC--CCHHHHH-------------HHHHHHHHCCCC---CCCCC
T ss_conf 79999999888865684015509----------77486--8988998-------------864343221356---78778
Q ss_pred C-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 9-921321799522257899987835992099966854799540132005333554599633
Q 002599 841 G-PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 841 g-~~t~~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
. .|..+.| +|+.. .|||||+|||||||||||+|+++.+||+||||-
T Consensus 60 ~pdF~~n~~------------~~~~~---~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~ 106 (203)
T 3q3w_A 60 NMDFNLNKK------------EYQNS---SILVSFENFGSGSSREHAPWALVDYGIRAIIAP 106 (203)
T ss_dssp CTTSGGGSG------------GGTTE---EEEEECSSBTBSSCCTHHHHHHHHHTCCEEEES
T ss_pred CCCHHHCCC------------CCCCC---CEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 988112653------------35898---889969877888767899999998295299978
No 8
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=154.75 Aligned_cols=81 Identities=32% Similarity=0.453 Sum_probs=63.1
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCEEE
Q ss_conf 38987639985547304799889999577688760878433454567778601200112242011210038977992132
Q 002599 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (902)
Q Consensus 767 a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~g~~t~~ 846 (902)
+++ +++|||||||||+||. ||+ + .|.+.+.+.+|.+++
T Consensus 5 g~~-~~~~dnidTD~IiPa~----------~l~-~--------------~~~~~l~~~~f~~~~---------------- 42 (163)
T 1v7l_A 5 GKV-WKFGDDISTDEITPGR----------YNL-T--------------KDPKELAKIAFIEVR---------------- 42 (163)
T ss_dssp EEE-EECCSCCBHHHHSCTT----------SCC-C--------------SCHHHHHHHTTTTTC----------------
T ss_pred EEE-EECCCCCCHHCCCHHH----------HHC-C--------------CCHHHHHHHHCCCCC----------------
T ss_conf 999-9839988840254377----------738-7--------------998899997677668----------------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 1799522257899987835992099966854799540132005333554599633
Q 002599 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 847 ~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
++++.++++ .+|||||+|||||||||||||+++++||+||||-
T Consensus 43 ---------p~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~ 85 (163)
T 1v7l_A 43 ---------PDFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAE 85 (163)
T ss_dssp ---------TTHHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEES
T ss_pred ---------CCHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf ---------654773788---8789955867898888999999998598799971
No 9
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=152.18 Aligned_cols=84 Identities=29% Similarity=0.365 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 65638987639985547304799889999577688760878433454567778601200112242011210038977992
Q 002599 764 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPK 843 (902)
Q Consensus 764 i~~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~g~~ 843 (902)
+..++++ ++||||+||+|+||. ||+. .. .+-+.+..|.+++
T Consensus 4 ~i~g~v~-~~gdnIdTD~IiPa~----------~l~~--~~-------------~~~l~~~~f~~~~------------- 44 (176)
T 3vba_A 4 IIKGRVW-KFGNNVDTDAILPAR----------YLVY--TK-------------PEELAQFVMTGAD------------- 44 (176)
T ss_dssp EEEEEEE-ECCSSCBHHHHSCGG----------GTTC--CS-------------HHHHGGGTTTTTC-------------
T ss_pred EEEEEEE-EECCCCCHHHCCCHH----------HHCC--CC-------------HHHHHHHHCCCCC-------------
T ss_conf 6888999-908976566438087----------7086--99-------------8999975176778-------------
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 1321799522257899987835992099966854799540132005333554599633
Q 002599 844 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 844 t~~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
++++.+|++. .|||||+||||||||||||++++.+|++||||-
T Consensus 45 ------------p~F~~~~~~g---~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~ 87 (176)
T 3vba_A 45 ------------PDFPKKVKPG---DIIVGGKNFGCGSSREHAPLGLKGAGISCVIAE 87 (176)
T ss_dssp ------------TTHHHHCCTT---CEEEECTTBTBSSCCTHHHHHHHHTTCCEEEES
T ss_pred ------------CCHHHHCCCC---CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf ------------3178754788---889967876288567899999999697499965
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=151.69 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 86563898763998554730479988999957768876087843345456777860120011224201121003897799
Q 002599 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (902)
Q Consensus 763 ~i~~a~vL~~~gd~itTDhIsPag~i~~~s~a~~yL~~~G~~~~~fnsygsrRgN~evm~RgtFan~r~~n~~~~~~~g~ 842 (902)
....++++.+.||||+||+|+|++ ||+. +.+.. |-+..|.++|... .
T Consensus 8 ~~~~G~~~~l~~dnIdTD~IiPa~----------~L~~--~~~~~-------------l~~~~f~~~R~~p--------~ 54 (171)
T 3h5j_A 8 HTHSGIGVPLRRSNVDTDQIIPAV----------FLKR--VTRTG-------------FEDGLFAGWRSDP--------A 54 (171)
T ss_dssp SEEEEEEEEECCCSCCHHHHSCGG----------GTTC--CSCSC-------------CGGGTTTTGGGST--------T
T ss_pred EEEEEEEEECCCCCCCCCCCCCHH----------HCCC--CCHHH-------------HHHHHHCCCCCCC--------C
T ss_conf 799999998668766830177465----------5487--99899-------------9887540676796--------8
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEC
Q ss_conf 21321799522257899987835992099966854799540132005333554599633
Q 002599 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLVSLFIWPF 901 (902)
Q Consensus 843 ~t~~~p~g~~~~i~~aa~~y~~~~~p~iivaG~nyG~GSSRe~Aak~~~llGv~aVia~ 901 (902)
|..+.+ +|+.. .|||||+|||||||||||+|+++.+|++||||-
T Consensus 55 F~~~~~------------~~~~~---~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~ 98 (171)
T 3h5j_A 55 FVLNLS------------PFDRG---SVLVAGPDFGTGSSREHAVWALMDYGFRVVISS 98 (171)
T ss_dssp SGGGST------------TGGGC---CEEEECSSBTCSSCCHHHHHHHHHHTCCEEEES
T ss_pred CCCCCC------------CCCCC---CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 000650------------24798---689968873488677999999998699599988
Done!