Query 002600
Match_columns 902
No_of_seqs 896 out of 5865
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.2E-71 9.2E-76 691.1 48.9 583 37-824 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.7E-56 2.1E-60 552.8 39.4 514 215-822 70-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 3.2E-39 7E-44 325.5 -11.3 464 234-798 64-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 2.4E-39 5.2E-44 326.4 -18.5 489 115-774 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.8E-35 3.8E-40 311.3 5.1 372 365-799 79-453 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.8E-35 3.8E-40 311.3 4.6 375 101-518 72-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 5.6E-35 1.2E-39 324.1 -4.8 446 209-795 63-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.8E-34 3.9E-39 320.1 -5.3 408 104-547 12-420 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.3E-36 284.1 -3.7 393 239-803 8-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-31 2.6E-36 283.8 -4.7 349 104-522 23-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 5.5E-25 1.2E-29 222.9 -5.9 381 365-795 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.9E-21 1.1E-25 239.9 22.7 343 383-795 553-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.3E-20 9.3E-25 231.4 26.8 126 365-520 779-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 8.2E-21 1.8E-25 220.0 16.7 78 716-802 385-462 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 1.5E-20 3.3E-25 217.7 15.5 267 365-784 202-468 (788)
16 KOG4237 Extracellular matrix p 99.8 6.2E-23 1.4E-27 208.1 -4.2 290 115-497 69-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 5E-18 1.1E-22 198.5 16.4 325 32-449 56-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.9E-18 8.4E-23 199.5 13.8 54 390-449 180-233 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.5E-18 5.3E-23 187.6 -0.2 225 501-797 73-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.4E-22 182.5 2.6 169 263-449 21-206 (319)
21 KOG0617 Ras suppressor protein 99.6 5E-17 1.1E-21 146.6 -4.6 159 593-807 36-195 (264)
22 PLN03150 hypothetical protein; 99.6 8.5E-15 1.8E-19 171.3 10.8 115 715-829 420-538 (623)
23 KOG0617 Ras suppressor protein 99.5 1.5E-15 3.3E-20 137.1 -4.3 163 236-434 31-194 (264)
24 PLN03150 hypothetical protein; 99.4 5.2E-13 1.1E-17 156.3 12.6 129 34-175 367-503 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 3E-17 139.5 -1.6 173 563-800 77-249 (722)
26 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.5E-16 125.7 -0.3 188 110-301 118-313 (505)
27 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.6E-16 132.4 -3.6 178 510-781 76-253 (722)
28 KOG1909 Ran GTPase-activating 99.0 1.3E-11 2.7E-16 125.2 -3.6 180 103-302 20-226 (382)
29 KOG3207 Beta-tubulin folding c 98.9 1.1E-10 2.5E-15 121.5 -1.3 140 160-302 119-259 (505)
30 PF14580 LRR_9: Leucine-rich r 98.9 3.8E-10 8.2E-15 108.0 2.1 131 110-273 16-148 (175)
31 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 122.9 5.5 154 593-804 143-296 (394)
32 PF08263 LRRNT_2: Leucine rich 98.9 2.1E-09 4.5E-14 77.1 4.3 41 37-77 1-43 (43)
33 KOG1909 Ran GTPase-activating 98.9 5.3E-10 1.1E-14 113.6 1.0 185 331-547 88-283 (382)
34 PF14580 LRR_9: Leucine-rich r 98.8 1.2E-09 2.6E-14 104.6 2.4 104 188-298 42-149 (175)
35 COG4886 Leucine-rich repeat (L 98.8 6.1E-09 1.3E-13 117.0 8.1 36 137-173 115-151 (394)
36 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.6E-14 83.6 3.9 59 738-796 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.3E-14 83.0 4.1 60 714-773 2-61 (61)
38 KOG1259 Nischarin, modulator o 98.7 2.3E-09 4.9E-14 106.2 0.8 129 365-500 285-414 (490)
39 KOG1259 Nischarin, modulator o 98.7 3.3E-09 7.1E-14 105.0 1.4 135 382-523 278-413 (490)
40 KOG4658 Apoptotic ATPase [Sign 98.7 5.3E-09 1.2E-13 125.2 3.3 81 114-198 546-628 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.6 3E-08 6.6E-13 118.8 4.2 128 187-322 522-651 (889)
42 KOG0531 Protein phosphatase 1, 98.6 8.1E-09 1.7E-13 116.1 -0.8 173 111-302 70-245 (414)
43 KOG0531 Protein phosphatase 1, 98.5 2.6E-08 5.7E-13 111.9 -0.9 130 159-302 69-199 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-09 3.1E-14 107.6 -10.9 181 113-299 185-373 (419)
45 KOG4579 Leucine-rich repeat (L 98.4 1.4E-08 3.1E-13 89.1 -4.5 86 716-804 80-165 (177)
46 KOG1859 Leucine-rich repeat pr 98.3 1.9E-08 4.1E-13 111.1 -7.2 128 622-800 165-294 (1096)
47 KOG1859 Leucine-rich repeat pr 98.2 8.2E-08 1.8E-12 106.2 -3.9 129 336-475 165-293 (1096)
48 KOG2982 Uncharacterized conser 98.2 2.5E-07 5.3E-12 92.1 -1.6 66 185-250 68-133 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 1.5E-07 3.4E-12 92.3 -3.7 39 109-147 26-67 (388)
50 KOG2120 SCF ubiquitin ligase, 98.1 1.1E-07 2.3E-12 94.6 -5.1 180 365-570 186-372 (419)
51 COG5238 RNA1 Ran GTPase-activa 98.1 5.5E-07 1.2E-11 88.5 -1.3 37 365-401 215-255 (388)
52 PF12799 LRR_4: Leucine Rich r 97.9 6.9E-06 1.5E-10 58.9 2.6 36 738-774 2-37 (44)
53 KOG4579 Leucine-rich repeat (L 97.8 6.5E-07 1.4E-11 79.0 -4.5 141 593-785 30-170 (177)
54 KOG2982 Uncharacterized conser 97.8 4.7E-06 1E-10 83.2 0.7 207 111-320 69-286 (418)
55 PF12799 LRR_4: Leucine Rich r 97.7 2.1E-05 4.6E-10 56.4 2.8 38 761-799 1-38 (44)
56 PRK15386 type III secretion pr 97.5 0.00028 6E-09 76.3 8.4 56 737-796 156-217 (426)
57 KOG2739 Leucine-rich acidic nu 97.4 4.5E-05 9.7E-10 75.8 0.8 96 103-202 33-130 (260)
58 PRK15386 type III secretion pr 97.4 0.00055 1.2E-08 74.1 8.5 71 365-448 53-124 (426)
59 KOG4341 F-box protein containi 97.3 4.2E-06 9.1E-11 87.6 -8.0 231 113-346 138-383 (483)
60 KOG1644 U2-associated snRNP A' 97.3 0.00044 9.5E-09 65.9 5.4 107 113-249 42-151 (233)
61 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 65.5 5.7 85 388-474 42-126 (233)
62 KOG4341 F-box protein containi 97.2 8.5E-06 1.8E-10 85.4 -6.8 85 138-224 138-226 (483)
63 KOG3665 ZYG-1-like serine/thre 97.1 0.00015 3.2E-09 85.3 0.8 152 113-271 122-281 (699)
64 KOG3665 ZYG-1-like serine/thre 97.0 0.00035 7.5E-09 82.3 2.9 88 212-303 171-264 (699)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00032 7E-09 69.8 1.5 67 134-202 39-105 (260)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0035 7.6E-08 57.7 7.1 105 383-493 7-111 (129)
67 PF13306 LRR_5: Leucine rich r 96.3 0.0079 1.7E-07 55.3 6.3 122 406-535 6-127 (129)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0043 9.3E-08 36.9 1.1 11 740-750 3-13 (22)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0043 9.3E-08 36.9 0.9 21 762-783 1-21 (22)
70 KOG2123 Uncharacterized conser 95.7 0.00056 1.2E-08 68.2 -5.0 81 365-449 20-101 (388)
71 KOG2123 Uncharacterized conser 95.5 0.00039 8.4E-09 69.2 -6.5 82 112-199 18-99 (388)
72 KOG1947 Leucine rich repeat pr 94.8 0.004 8.7E-08 72.1 -2.3 113 187-302 187-308 (482)
73 KOG4308 LRR-containing protein 94.8 0.00082 1.8E-08 75.7 -7.7 177 385-603 112-303 (478)
74 KOG1947 Leucine rich repeat pr 93.6 0.032 7E-07 64.5 1.7 139 387-536 242-389 (482)
75 KOG0473 Leucine-rich repeat pr 93.6 0.003 6.5E-08 61.4 -5.6 81 715-798 44-124 (326)
76 KOG4308 LRR-containing protein 93.1 0.0013 2.8E-08 74.2 -10.4 198 290-526 88-307 (478)
77 PF13504 LRR_7: Leucine rich r 91.5 0.1 2.2E-06 28.7 1.1 11 763-773 3-13 (17)
78 PF13504 LRR_7: Leucine rich r 91.4 0.12 2.6E-06 28.5 1.3 13 738-750 2-14 (17)
79 KOG0473 Leucine-rich repeat pr 90.4 0.014 2.9E-07 57.0 -5.2 90 639-775 36-125 (326)
80 smart00370 LRR Leucine-rich re 86.5 0.48 1E-05 29.4 1.7 14 761-774 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 86.5 0.48 1E-05 29.4 1.7 14 761-774 2-15 (26)
82 PF13516 LRR_6: Leucine Rich r 84.1 0.21 4.5E-06 30.4 -0.9 15 761-775 2-16 (24)
83 smart00370 LRR Leucine-rich re 81.7 1.1 2.5E-05 27.6 1.9 20 214-233 2-21 (26)
84 smart00369 LRR_TYP Leucine-ric 81.7 1.1 2.5E-05 27.6 1.9 20 214-233 2-21 (26)
85 KOG3864 Uncharacterized conser 73.4 0.56 1.2E-05 45.4 -1.9 80 365-444 102-184 (221)
86 smart00365 LRR_SD22 Leucine-ri 73.4 2.6 5.6E-05 26.2 1.6 15 760-774 1-15 (26)
87 KOG4242 Predicted myosin-I-bin 72.1 7.5 0.00016 42.7 5.8 22 334-355 164-185 (553)
88 smart00364 LRR_BAC Leucine-ric 71.9 2.4 5.2E-05 26.2 1.2 13 738-750 3-15 (26)
89 KOG3763 mRNA export factor TAP 68.7 1.9 4.2E-05 48.1 0.6 13 266-278 271-283 (585)
90 KOG3864 Uncharacterized conser 67.9 0.82 1.8E-05 44.3 -2.1 34 139-172 102-135 (221)
91 KOG4242 Predicted myosin-I-bin 63.6 13 0.00029 40.9 5.6 20 289-308 165-184 (553)
92 smart00368 LRR_RI Leucine rich 60.3 6.3 0.00014 24.9 1.6 14 761-774 2-15 (28)
93 TIGR00864 PCC polycystin catio 43.5 14 0.0003 50.0 2.2 32 743-774 1-32 (2740)
94 KOG3763 mRNA export factor TAP 38.1 14 0.0003 41.7 0.8 63 712-776 217-285 (585)
95 PF15102 TMEM154: TMEM154 prot 26.3 73 0.0016 29.4 3.3 23 860-882 66-88 (146)
96 smart00367 LRR_CC Leucine-rich 21.3 66 0.0014 19.7 1.5 11 214-224 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-71 Score=691.09 Aligned_cols=583 Identities=33% Similarity=0.558 Sum_probs=389.2
Q ss_pred CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCccccceeecCCCCcEEEEEcCCCCCCCCCCccccccccccccCCCCCC
Q 002600 37 VDSERQALLKLKQDLSDPSNRLASWNIGDGDCCAWDGVVCNNFTGHVLQLNLGNPNPNYGTGSKLVGKINPSLFDLKHLI 116 (902)
Q Consensus 37 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~c~w~gv~c~~~~g~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~ 116 (902)
.++|++||++||+++.+|.+.+.+|+. +.+||.|.||+|++ .++|+.|+|+++ .+.|.+++.+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCCCC
Confidence 458999999999999888888899974 67999999999985 679999999985 67888888999999999
Q ss_pred eEeCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCEEeC
Q 002600 117 HLDLSDNDFQGIQTPSYLG-SLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDL 195 (902)
Q Consensus 117 ~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 195 (902)
+|+|++|.+++. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.
T Consensus 97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~---------------------- 151 (968)
T PLN00113 97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM---------------------- 151 (968)
T ss_pred EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc----------------------
Confidence 999999999873 676544 889999999999998887774 345556666655553
Q ss_pred CCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCC
Q 002600 196 SLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDN 275 (902)
Q Consensus 196 s~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n 275 (902)
+++ ..+..++.+++|++|++++|.+.+..+..+.++++|++|++++|.+.+.+|. .++++++|++|++++|
T Consensus 152 ----~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 152 ----LSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYN 222 (968)
T ss_pred ----ccc--cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCC
Confidence 221 1122344555555555555555554444455555555555555555544444 4444555555555555
Q ss_pred cCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHH
Q 002600 276 EFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVL 355 (902)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 355 (902)
.+++.+|..++++++|++|++++|.++ +.+|..++++++|+.|++++
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~----------------------~~~p~~l~~l~~L~~L~L~~----------- 269 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLT----------------------GPIPSSLGNLKNLQYLFLYQ----------- 269 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceec----------------------cccChhHhCCCCCCEEECcC-----------
Confidence 555445544555555555555554444 23333444444444444444
Q ss_pred HhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCC
Q 002600 356 DIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQL 435 (902)
Q Consensus 356 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 435 (902)
|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+
T Consensus 270 ------------------n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 331 (968)
T PLN00113 270 ------------------NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331 (968)
T ss_pred ------------------CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence 44444444444455555555555555555555555555555555555555555555555555
Q ss_pred CCCCeEEcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEE
Q 002600 436 SHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILD 515 (902)
Q Consensus 436 ~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 515 (902)
++|+.|++++|.+++.+|. .+..+++|+.|++++|++.+. .|.++..+++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~------------------------~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGE------------------------IPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEee------------------------CChhHhCcCCCCEEE
Confidence 5555555555555544444 444444444444444444333 333344444555555
Q ss_pred ccCCcCCCcCChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEE
Q 002600 516 ISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYL 595 (902)
Q Consensus 516 Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L 595 (902)
+++|.+.+.+|..+. .+++|+.|++++|++++.+|..+..+ +.| +.+
T Consensus 387 l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l---~~L-----------------------------~~L 433 (968)
T PLN00113 387 LFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKL---PLV-----------------------------YFL 433 (968)
T ss_pred CcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcC---CCC-----------------------------CEE
Confidence 555555555554432 24555555555555555554433222 123 333
Q ss_pred EccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccC
Q 002600 596 KLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAAN 675 (902)
Q Consensus 596 ~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~ 675 (902)
++++|.+++.+|..+..+++| +.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++++|
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L-------~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L---- 501 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSL-------QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL---- 501 (968)
T ss_pred ECcCCcccCccChhhccCCCC-------cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc----
Confidence 333333333334333334432 345566666666665544 34789999999999999999888887777
Q ss_pred CCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCC
Q 002600 676 SSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPE 755 (902)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 755 (902)
+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|.
T Consensus 502 ----------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 502 ----------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred ----------------------------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 8899999999999999999999999999999999999999
Q ss_pred CCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCCcccccCCCCCcCCCCCccccCCC-CCCCCC
Q 002600 756 NIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSSTQLQSMDASSFAGN-NLCGAP 824 (902)
Q Consensus 756 ~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~N-~lcg~~ 824 (902)
.++++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.+|..+++.++...+|.|| .+||.+
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.7e-56 Score=552.77 Aligned_cols=514 Identities=32% Similarity=0.481 Sum_probs=351.4
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCcccccccccc-CCCCccEEEccCCcCCCCCCcCCCCCCCCCE
Q 002600 215 SLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVF-GLRNLVFFDLSDNEFHGKIPSGLGNLTFLRH 293 (902)
Q Consensus 215 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (902)
+++.|++++|.+++..+..+..+++|++|+|++|++++.+|. .+. .+++|++|++++|.+++.+|. +.+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD---DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCCh---HHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 455555555555555555555555666666666655555544 222 555666666666666555553 34556666
Q ss_pred EEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHHHhhcccccccccEEEccC
Q 002600 294 LDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSG 373 (902)
Q Consensus 294 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 373 (902)
|++++|.+++..| ..++.+++|++|++++|.+.+..|..+..++ +|++|++++
T Consensus 145 L~Ls~n~~~~~~p----------------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~ 197 (968)
T PLN00113 145 LDLSNNMLSGEIP----------------------NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLAS 197 (968)
T ss_pred EECcCCcccccCC----------------------hHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccC
Confidence 6666666553333 3333333344444444444433443333333 444444444
Q ss_pred cccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccc
Q 002600 374 CHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLS 453 (902)
Q Consensus 374 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~ 453 (902)
|.+.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 44444444455555555555555555555555555555555555555555555555555555555555555555554444
Q ss_pred hhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChhHHhcc
Q 002600 454 EIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSI 533 (902)
Q Consensus 454 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~ 533 (902)
. .+.++++|+.|++++|.+.+..+..+..+.+|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+.. +
T Consensus 278 ~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~ 355 (968)
T PLN00113 278 P-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-H 355 (968)
T ss_pred h-hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-C
Confidence 4 4445555555555555555444444455556666666666666677777777778888888888887777776543 5
Q ss_pred CCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCCccccCC
Q 002600 534 SQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNW 613 (902)
Q Consensus 534 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l 613 (902)
++|+.|++++|++++.+|..+... +.++.+++++|.+.+.+|..+. .++++ +.|++++|++++.+|..+..+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~---~~L~~L~l~~n~l~~~~p~~~~----~~~~L-~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSS---GNLFKLILFSNSLEGEIPKSLG----ACRSL-RRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCc---CCCCEEECcCCEecccCCHHHh----CCCCC-CEEECcCCEeeeECChhHhcC
Confidence 778888888888887777655443 3678888888888887775543 46677 999999999999999999888
Q ss_pred CccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCcccc
Q 002600 614 PNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDV 693 (902)
Q Consensus 614 ~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 693 (902)
+.| +.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+. .+.
T Consensus 428 ~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~----------------------- 476 (968)
T PLN00113 428 PLV-------YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKR----------------------- 476 (968)
T ss_pred CCC-------CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-ccc-----------------------
Confidence 875 5688999999999999999999999999999999998887553 233
Q ss_pred ceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcc
Q 002600 694 FEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQL 773 (902)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 773 (902)
|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|+.++++++|++|+|++|++
T Consensus 477 ---------------------L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 477 ---------------------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred ---------------------ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCeEECcCCcccccCCCC-CcCCCCCccccCCCCCCC
Q 002600 774 SGKVPQSMSSLSFLNHLNLSYNNLTGKIPSS-TQLQSMDASSFAGNNLCG 822 (902)
Q Consensus 774 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~~~~N~lcg 822 (902)
+|.+|..+..+++|++||+++|+++|.+|.. ..+..+....+.+|.+.|
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999999999964 345556666778886654
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.2e-39 Score=325.50 Aligned_cols=464 Identities=26% Similarity=0.382 Sum_probs=288.5
Q ss_pred CCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCC
Q 002600 234 STNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLN 313 (902)
Q Consensus 234 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 313 (902)
+.++..|.+|++++|++. ..|. .++.+..++.++.++|+++ .+|+.++.+.+|+.++.++|.+.
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~---aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~----------- 127 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPA---AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK----------- 127 (565)
T ss_pred hhcccceeEEEeccchhh-hCCH---HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-----------
Confidence 334444444444444443 1222 4445555555555555554 45555555555555555555553
Q ss_pred CCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEE
Q 002600 314 DLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTL 393 (902)
Q Consensus 314 ~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 393 (902)
.+|+.++.+..++.++..+|++....++ +..+. ++..+++.+|++....|..+. ++.|++|
T Consensus 128 ------------el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~-----~l~~l~~~~n~l~~l~~~~i~-m~~L~~l 188 (565)
T KOG0472|consen 128 ------------ELPDSIGRLLDLEDLDATNNQISSLPED-MVNLS-----KLSKLDLEGNKLKALPENHIA-MKRLKHL 188 (565)
T ss_pred ------------ecCchHHHHhhhhhhhccccccccCchH-HHHHH-----HHHHhhccccchhhCCHHHHH-HHHHHhc
Confidence 3344444444444555555544433222 22222 455555555555544444443 6666666
Q ss_pred ECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEEccCcee
Q 002600 394 ELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSL 473 (902)
Q Consensus 394 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l 473 (902)
|...|.+. .+|..++.+.+|+.|++..|++. .+| .|.+|..|++|+++.|++. .+|.....+++++..||+.+|++
T Consensus 189 d~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 189 DCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence 66666555 55556666666666666666665 455 5666666666666666665 55655555666666666666665
Q ss_pred eEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChhHHhccC--CCcEEe-------cccc
Q 002600 474 IFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSIS--QYVYLN-------LSTN 544 (902)
Q Consensus 474 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~--~L~~L~-------Ls~N 544 (902)
... |....-+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+. .+-..+.+.-+ -|+||. ++.-
T Consensus 265 ke~-Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 265 KEV-PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ccC-chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 432 223333445666666666665 566677777 7888888888775 22222111000 011111 1111
Q ss_pred cce----eeCCC-CCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCCccccCCCcccee
Q 002600 545 QIY----GEIPN-CDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVL 619 (902)
Q Consensus 545 ~l~----~~~p~-~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l 619 (902)
+=. +..|. .+......-+.+.|+++.-+++. +|+.+.+... ..+...++++.|++. .+|..+..++.+.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~--~~~Vt~VnfskNqL~-elPk~L~~lkelv-- 414 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAK--SEIVTSVNFSKNQLC-ELPKRLVELKELV-- 414 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhh--hcceEEEecccchHh-hhhhhhHHHHHHH--
Confidence 000 00000 01111112346788888888876 4544433211 122378999999998 7887666555442
Q ss_pred cccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCccccceeeEE
Q 002600 620 NLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASV 699 (902)
Q Consensus 620 ~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (902)
..+.+++|.++ .+|..++.+++|+.|+|++|-+. .+|..++.+..|
T Consensus 415 ----T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L---------------------------- 460 (565)
T KOG0472|consen 415 ----TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL---------------------------- 460 (565)
T ss_pred ----HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh----------------------------
Confidence 34556777665 88999999999999999999886 678888877766
Q ss_pred EeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCc
Q 002600 700 VTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQ 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~ 779 (902)
+.||+|+|+|. .+|..+..+..|+.+-.++|++....|+.+.+|.+|..|||.+|.+. .||.
T Consensus 461 ----------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 461 ----------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred ----------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 89999999998 89999999999998888899999666666999999999999999998 8999
Q ss_pred cccCCCCCCeEECcCCccc
Q 002600 780 SMSSLSFLNHLNLSYNNLT 798 (902)
Q Consensus 780 ~l~~l~~L~~L~Ls~N~l~ 798 (902)
.++++++|++|++++|+|.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 9999999999999999998
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=326.40 Aligned_cols=489 Identities=27% Similarity=0.395 Sum_probs=292.1
Q ss_pred CCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCEEe
Q 002600 115 LIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLD 194 (902)
Q Consensus 115 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 194 (902)
++.|+++.|.+..+ .+.+.++..|.+|++++|+++ ..|++++.+..++.++.++|.+...+.. +..+.+|++++
T Consensus 47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~---i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQ---IGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhc--cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHH---Hhhhhhhhhhh
Confidence 44455555555543 333455555555555555555 3445555555555555555543322221 22233333333
Q ss_pred CCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccC
Q 002600 195 LSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSD 274 (902)
Q Consensus 195 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~ 274 (902)
.++|.+... +..++.+-.|+.++..+|+++..|+ .+.++.+|..+++.+|++....|. .+ +++.|++||...
T Consensus 121 ~s~n~~~el---~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~---~i-~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 121 CSSNELKEL---PDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPEN---HI-AMKRLKHLDCNS 192 (565)
T ss_pred ccccceeec---CchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHH---HH-HHHHHHhcccch
Confidence 333333332 2234455555556666666655544 334444555555555554433332 12 244455555544
Q ss_pred CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHH
Q 002600 275 NEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQV 354 (902)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 354 (902)
|.+. .+|+.++.+.+|+.|++.+|++. ..| .|..+.
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-----------------------~lP-ef~gcs------------------- 228 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-----------------------FLP-EFPGCS------------------- 228 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-----------------------cCC-CCCccH-------------------
Confidence 4443 44444555555555555555443 122 344444
Q ss_pred HHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcC
Q 002600 355 LDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQ 434 (902)
Q Consensus 355 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 434 (902)
.|+++.++.|++.....+...+++++..||+++|+++ ..|+.+.-+.+|+.||+++|.|+ .+|.++++
T Consensus 229 ----------~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 229 ----------LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred ----------HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 4555555555553332333447888999999999998 78888888999999999999998 67888999
Q ss_pred CCCCCeEEcccccCccccchhhhccCc--cccEEEc--cCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCC
Q 002600 435 LSHLELLDLSNNRLNGTLSEIHFVNLT--KLTSFSA--FGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKH 510 (902)
Q Consensus 435 l~~L~~L~Ls~N~l~~~i~~~~~~~l~--~L~~L~l--~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 510 (902)
+ .|+.|.+.+|.+. .+....+..-+ -|++|.- .+-.++......- ...+. ............+
T Consensus 297 l-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e------~~~t~-----~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE------TAMTL-----PSESFPDIYAIIT 363 (565)
T ss_pred c-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc------ccCCC-----CCCcccchhhhhh
Confidence 8 8999999999886 44332221111 1222210 0001100000000 00000 0011122334567
Q ss_pred ccEEEccCCcCCCcCChhHHhccC--CCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccc
Q 002600 511 LFILDISNTRISDTIPRWFWNSIS--QYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEA 588 (902)
Q Consensus 511 L~~L~Ls~N~l~~~~p~~~~~~~~--~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 588 (902)
.+.|++++-+++ .+|+..|..-. -....+++.|++. ++|. .+. ..
T Consensus 364 tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk---------------------------~L~----~l 410 (565)
T KOG0472|consen 364 TKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK---------------------------RLV----EL 410 (565)
T ss_pred hhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh---------------------------hhH----HH
Confidence 788888888888 78888776432 2556677777665 3332 111 12
Q ss_pred cccceEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeeccccccccccccccc
Q 002600 589 DNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNF 668 (902)
Q Consensus 589 ~~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 668 (902)
..+...+.+++|.++ .+|..+..+++| ..|+|++|-+. .+|..++.+..|+.||+|.|+|. .+|.++..+
T Consensus 411 kelvT~l~lsnn~is-fv~~~l~~l~kL-------t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l 480 (565)
T KOG0472|consen 411 KELVTDLVLSNNKIS-FVPLELSQLQKL-------TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL 480 (565)
T ss_pred HHHHHHHHhhcCccc-cchHHHHhhhcc-------eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH
Confidence 222245666777665 567667777765 45778888887 78889999999999999999997 678887766
Q ss_pred ccccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCc
Q 002600 669 TAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNL 748 (902)
Q Consensus 669 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 748 (902)
..+ +.+-.++|++....|+.++++.+|..|||.+|.
T Consensus 481 q~l--------------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 481 QTL--------------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred HHH--------------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 665 556667799987767779999999999999999
Q ss_pred cccccCCCCcccCCCceEeCCCCccc
Q 002600 749 FTGKIPENIGNMRSIESLDFSMNQLS 774 (902)
Q Consensus 749 l~~~ip~~l~~l~~L~~LdLs~N~l~ 774 (902)
+. .||..+++|++|+.|++++|.+.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 99 89999999999999999999998
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=311.30 Aligned_cols=372 Identities=19% Similarity=0.219 Sum_probs=302.2
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLS 444 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 444 (902)
.-+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4567999999998888888899999999999999998 677755556679999999999987778888899999999999
Q ss_pred cccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCc
Q 002600 445 NNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDT 524 (902)
Q Consensus 445 ~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~ 524 (902)
.|.|+ +++...|..-.+++.|+|++|.|+......|..+.+|..|.|+.|+++...+..|.+++.|+.|||..|+|. .
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-i 235 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-I 235 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-e
Confidence 99998 777778888888999999999999998889988889999999999999888888888999999999999986 4
Q ss_pred CChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCccee
Q 002600 525 IPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSG 604 (902)
Q Consensus 525 ~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g 604 (902)
+....|+.+++|+.|.+..|.++..-...+..+ .+++.|+|+.|+++..-- ..+..++.+ +.|++|+|.|..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l---~kme~l~L~~N~l~~vn~----g~lfgLt~L-~~L~lS~NaI~r 307 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL---EKMEHLNLETNRLQAVNE----GWLFGLTSL-EQLDLSYNAIQR 307 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeee---cccceeecccchhhhhhc----ccccccchh-hhhccchhhhhe
Confidence 444456778899999999998875544444433 478888888888875332 233446667 888888888888
Q ss_pred cCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccc
Q 002600 605 DIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAIS 684 (902)
Q Consensus 605 ~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 684 (902)
.-++.|..+++| ++|+|++|+++...+..|..+..|+.|.|++|.++..-...|..+++|
T Consensus 308 ih~d~WsftqkL-------~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL------------- 367 (873)
T KOG4194|consen 308 IHIDSWSFTQKL-------KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL------------- 367 (873)
T ss_pred eecchhhhcccc-------eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh-------------
Confidence 888888877765 457788888888888888888888888888888886666666666666
Q ss_pred cccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCcc---ccccCCCCeEeccCCccccccCCCCcccC
Q 002600 685 YIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKE---LTNLMGLQSLNFSHNLFTGKIPENIGNMR 761 (902)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 761 (902)
+.|||++|.+++.|-+. |..+++|+.|+|.+|+|...--.+|..+.
T Consensus 368 -------------------------------~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 368 -------------------------------HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE 416 (873)
T ss_pred -------------------------------hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc
Confidence 88899999988866543 77788999999999999855556888899
Q ss_pred CCceEeCCCCcccccCCccccCCCCCCeEECcCCcccc
Q 002600 762 SIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTG 799 (902)
Q Consensus 762 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 799 (902)
.||.|||.+|.|-..-|..|..+ .|+.|.+..-.+-+
T Consensus 417 ~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred ccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 99999999999988888888888 78888776554443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=311.30 Aligned_cols=375 Identities=24% Similarity=0.232 Sum_probs=243.6
Q ss_pred ccccccccccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCcccccccc
Q 002600 101 LVGKINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVES 180 (902)
Q Consensus 101 l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~ 180 (902)
+.|.+|+ .-+.||+++|.++.+ .+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.+....
T Consensus 72 l~g~lp~------~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~-- 141 (873)
T KOG4194|consen 72 LKGFLPS------QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVT-- 141 (873)
T ss_pred cCCcCcc------ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccccccc--
Confidence 4555553 346799999999987 6778889999999999999988 67876666777999999998654332
Q ss_pred ccccCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCcccccccc
Q 002600 181 ISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSW 260 (902)
Q Consensus 181 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 260 (902)
-..++.++.|+.||||.|.++.++.- .+..-.++++|+|++|.|+.+....|..+.+|..|.|+.|+++..-+. .
T Consensus 142 se~L~~l~alrslDLSrN~is~i~~~--sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r---~ 216 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRNLISEIPKP--SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR---S 216 (873)
T ss_pred HHHHHhHhhhhhhhhhhchhhcccCC--CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH---H
Confidence 23456666777777777777665322 233445677777777777777666676667777777777766633222 4
Q ss_pred ccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEE
Q 002600 261 VFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSI 340 (902)
Q Consensus 261 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L 340 (902)
+.+++.|+.|+|..|++.-.---.|..+++|+.|.|..|.+.......| ..+.++++|
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F----------------------y~l~kme~l 274 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF----------------------YGLEKMEHL 274 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce----------------------eeeccccee
Confidence 5556677777776666653323456666666666666666664444444 445555555
Q ss_pred EccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEcc
Q 002600 341 DVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLF 420 (902)
Q Consensus 341 ~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 420 (902)
+++.|++...-..++..++ .|+.|++++|.+....++.+..+++|++|+|+.|+++...+.+|..+..|++|+|+
T Consensus 275 ~L~~N~l~~vn~g~lfgLt-----~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLT-----SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ecccchhhhhhcccccccc-----hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 6666655554444555444 66666666666666666666666666666666666666666666666666666666
Q ss_pred CCcCCCCcchhhcCCCCCCeEEcccccCccccch--hhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCC
Q 002600 421 NNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSE--IHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLG 498 (902)
Q Consensus 421 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 498 (902)
+|.++..--..|..+++|++|||++|.+.+.|.+ ..|.++++|+.|++.+|++..+...+|..+..||+|+|.+|.+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 6666644444566666666666666666655443 24556666666666666666666666666666666666666666
Q ss_pred CCCChhhcCCCCccEEEccC
Q 002600 499 PQFPSWLRSQKHLFILDISN 518 (902)
Q Consensus 499 ~~~~~~l~~~~~L~~L~Ls~ 518 (902)
.+-|.+|..+ .|++|.+..
T Consensus 430 SIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 430 SIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eecccccccc-hhhhhhhcc
Confidence 6666666666 666665543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.6e-35 Score=324.13 Aligned_cols=446 Identities=25% Similarity=0.300 Sum_probs=259.7
Q ss_pred ccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCCcCCCCC
Q 002600 209 TINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNL 288 (902)
Q Consensus 209 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 288 (902)
.+..++.|+.|+++.|.|...+ ....++.+|++|.|.+|.+. ..|. .+..+++|++|++++|.+. .+|..+..+
T Consensus 63 ~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~---~~~~lknl~~LdlS~N~f~-~~Pl~i~~l 136 (1081)
T KOG0618|consen 63 QITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPA---SISELKNLQYLDLSFNHFG-PIPLVIEVL 136 (1081)
T ss_pred hhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhh-cCch---hHHhhhcccccccchhccC-CCchhHHhh
Confidence 3445566666666666666655 35556666677777666654 3444 5666777777777777765 666666667
Q ss_pred CCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHHHhhcccccccccE
Q 002600 289 TFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALES 368 (902)
Q Consensus 289 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~ 368 (902)
+.++.+..++|......+. .. .+.+++..|.+.+.++..+..+. . .
T Consensus 137 t~~~~~~~s~N~~~~~lg~----~~-----------------------ik~~~l~~n~l~~~~~~~i~~l~-----~--~ 182 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQRLGQ----TS-----------------------IKKLDLRLNVLGGSFLIDIYNLT-----H--Q 182 (1081)
T ss_pred hHHHHHhhhcchhhhhhcc----cc-----------------------chhhhhhhhhcccchhcchhhhh-----e--e
Confidence 7777777776622111111 11 33334444444333333333211 1 2
Q ss_pred EEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccC
Q 002600 369 LVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRL 448 (902)
Q Consensus 369 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 448 (902)
|+|.+|.+. . ..+..+.+|+.|....|++... --..++|+.|+.++|.++...+. .--.+|+++++++|++
T Consensus 183 ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 183 LDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNL 253 (1081)
T ss_pred eecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhh
Confidence 444444443 1 1233344444454444444421 11223445555555544422111 1123445555555555
Q ss_pred ccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChh
Q 002600 449 NGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRW 528 (902)
Q Consensus 449 ~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~ 528 (902)
+ .+|+ ++..+.+|+.+...+|.+ ...+.......+|+.|.+..|.+. -+|......+.|++|||..|++. .+|+.
T Consensus 254 ~-~lp~-wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 254 S-NLPE-WIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred h-cchH-HHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchH
Confidence 4 3342 455555555555555544 222233334456666666666665 55667778889999999999987 66666
Q ss_pred HHhccCC-CcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCC
Q 002600 529 FWNSISQ-YVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIP 607 (902)
Q Consensus 529 ~~~~~~~-L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p 607 (902)
++..... +..|+.+.|++... | +.+ ......+ +.|.+.+|+++...-
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~l-p-~~~-----------------------------e~~~~~L-q~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTL-P-SYE-----------------------------ENNHAAL-QELYLANNHLTDSCF 376 (1081)
T ss_pred HHhhhhHHHHHHhhhhcccccc-c-ccc-----------------------------chhhHHH-HHHHHhcCcccccch
Confidence 5554433 67777777766521 1 000 0011223 667777777776665
Q ss_pred ccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCcccccccc
Q 002600 608 DCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIR 687 (902)
Q Consensus 608 ~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 687 (902)
+.+.+.++ |++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.++..|
T Consensus 377 p~l~~~~h-------LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L---------------- 432 (1081)
T KOG0618|consen 377 PVLVNFKH-------LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL---------------- 432 (1081)
T ss_pred hhhccccc-------eeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh----------------
Confidence 55666665 456778888888666667788888888888888887 567777777776
Q ss_pred CCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccc-cCCCCcccCCCceE
Q 002600 688 GGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGK-IPENIGNMRSIESL 766 (902)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L 766 (902)
++|...+|++. ..| ++..+++|+.+|+|.|+|+.. +|..... ++|++|
T Consensus 433 ----------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyL 481 (1081)
T KOG0618|consen 433 ----------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYL 481 (1081)
T ss_pred ----------------------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-ccccee
Confidence 67777788887 666 788888888888888888743 4444333 788888
Q ss_pred eCCCCcccccCCccccCCCCCCeEECcCC
Q 002600 767 DFSMNQLSGKVPQSMSSLSFLNHLNLSYN 795 (902)
Q Consensus 767 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 795 (902)
||++|.-...--..|..+..+..+++.-|
T Consensus 482 dlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 482 DLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eccCCcccccchhhhHHhhhhhheecccC
Confidence 88888744344455666666776776666
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-34 Score=320.14 Aligned_cols=408 Identities=25% Similarity=0.265 Sum_probs=270.3
Q ss_pred cccccccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccc
Q 002600 104 KINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISW 183 (902)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 183 (902)
.||..+..-.+++.|+++.|-+-..+ .+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+...+ ..
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp---~s 86 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP---SS 86 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc---hh
Confidence 34555555555666677766655532 234444555777777777665 55666677777777777777665444 34
Q ss_pred cCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccC
Q 002600 184 LSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFG 263 (902)
Q Consensus 184 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 263 (902)
+.++.+|+++.|..|.+...|. .+..+++|+.|+++.|.+..+|. .+..+..+..+..++|.... .++.
T Consensus 87 ~~~~~~l~~lnL~~n~l~~lP~---~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~-------~lg~ 155 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQSLPA---SISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQ-------RLGQ 155 (1081)
T ss_pred hhhhhcchhheeccchhhcCch---hHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhh-------hhcc
Confidence 5566667777777776665433 45666777777777777766654 55566667777777772111 1222
Q ss_pred CCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEcc
Q 002600 264 LRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVS 343 (902)
Q Consensus 264 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~ 343 (902)
. .++.+++..|.+.+.++..+..++. .|+|.+|.+. ...+..+.+|+.+...... +..---.-++++.|+.+
T Consensus 156 ~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~--ls~l~~~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 156 T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQ--LSELEISGPSLTALYAD 227 (1081)
T ss_pred c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcc--cceEEecCcchheeeec
Confidence 2 2667777777777777766666665 6777777765 2234445555555544311 11112234577888888
Q ss_pred CcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCc
Q 002600 344 YVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNT 423 (902)
Q Consensus 344 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 423 (902)
+|.+....+... ..+|++++++.|++++. |.+++.+.+|+.++..+|.++ .+|..+...++|+.|.+.+|.
T Consensus 228 ~n~l~~~~~~p~-------p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 228 HNPLTTLDVHPV-------PLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred cCcceeeccccc-------cccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence 887763332221 12788899999888654 488888999999999999886 677778888889999999998
Q ss_pred CCCCcchhhcCCCCCCeEEcccccCccccchhhhccCcc-ccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCC
Q 002600 424 LDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTK-LTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFP 502 (902)
Q Consensus 424 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 502 (902)
+. .+|+...+.++|++|+|..|++. .+|+..+..... |..+..+.|++.......-.....|+.|++.+|+++...-
T Consensus 299 l~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 88 67777788889999999999886 666656665555 7777777777766554444455678888888888887777
Q ss_pred hhhcCCCCccEEEccCCcCCCcCChhHHhccCCCcEEecccccce
Q 002600 503 SWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIY 547 (902)
Q Consensus 503 ~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~ 547 (902)
..+.+..+|+.|+|++|++. .+|+.....+..|+.|+||+|+++
T Consensus 377 p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 77777788888888888776 677666655555555555555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=284.12 Aligned_cols=393 Identities=26% Similarity=0.379 Sum_probs=223.3
Q ss_pred CCCeEecCCCcCCC-ccccccccccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCe
Q 002600 239 SLKALDLSGNHFNN-SLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEF 317 (902)
Q Consensus 239 ~L~~L~Ls~n~l~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 317 (902)
-.+-.|+++|.++| ..|. ....++.++.|.|...++. .+|+.++.+.+|++|.+++|++..
T Consensus 8 FVrGvDfsgNDFsg~~FP~---~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-------------- 69 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPH---DVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-------------- 69 (1255)
T ss_pred eeecccccCCcCCCCcCch---hHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--------------
Confidence 34445666666653 2333 5555666666666666655 566666666666666666666541
Q ss_pred eeccccCCCCCccccCCCCccEEEccCcccCC-cchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECC
Q 002600 318 LSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQ-DLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELR 396 (902)
Q Consensus 318 L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 396 (902)
+...+..++.|+.+.+..|++.. -+|..+..+. .|+.|||++|++. ..|..+...+++-.|+|+
T Consensus 70 ---------vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~-----dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 70 ---------VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK-----DLTILDLSHNQLR-EVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred ---------hhhhhccchhhHHHhhhccccccCCCCchhcccc-----cceeeecchhhhh-hcchhhhhhcCcEEEEcc
Confidence 22223334444444444444321 1222222222 3334444444432 233334444444444444
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEEccCceeeEE
Q 002600 397 DNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFK 476 (902)
Q Consensus 397 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~ 476 (902)
+|+|..+.-.-|.+++.|-.||||+|++. .+|+.+..+..|++|+|++|.+. ..
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-------------------------hf 188 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-------------------------HF 188 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-------------------------HH
Confidence 44444222222334444444444444444 34444444444444444444432 22
Q ss_pred eCCCCCCcccccccccccccCC-CCCChhhcCCCCccEEEccCCcCCCcCChhHHhccCCCcEEecccccceeeCCCCCC
Q 002600 477 VNQSWVPPFQLEKLRLRSCHLG-PQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDR 555 (902)
Q Consensus 477 ~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 555 (902)
.-..+-...+|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. .+|+.+.. +++|+.|+||+|+|+.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~ite------- 259 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITE------- 259 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceee-------
Confidence 2222222334444444443322 246666666667777777777665 55555543 4555555555555541
Q ss_pred CCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCCccccCCCccceecccccEEEeecCcccc
Q 002600 556 PLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHG 635 (902)
Q Consensus 556 ~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~ 635 (902)
+..+.+.+.+ +++|+++.|+++
T Consensus 260 --------------------------------------------------L~~~~~~W~~-------lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 260 --------------------------------------------------LNMTEGEWEN-------LETLNLSRNQLT- 281 (1255)
T ss_pred --------------------------------------------------eeccHHHHhh-------hhhhccccchhc-
Confidence 1111112222 345667777777
Q ss_pred ccCCCcCCCCCCCEEEeeccccc-ccccccccccccccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccc
Q 002600 636 SLPIQLCRLNSLQILDVAHNSLS-GIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNL 714 (902)
Q Consensus 636 ~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (902)
.+|+.++.+++|+.|++.+|+++ .-+|..++.+..|
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L------------------------------------------- 318 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL------------------------------------------- 318 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-------------------------------------------
Confidence 67888889999999999999886 3478888888877
Q ss_pred eEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcC
Q 002600 715 VRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSY 794 (902)
Q Consensus 715 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 794 (902)
+++..++|.+. ..|+.+..+..|+.|.|++|++- .+|+.+.-|+.|+.|||..|.---..|.-=..-++|+.-++..
T Consensus 319 -evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 319 -EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred -HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 77788888887 89999999999999999999998 7999999999999999999976644443323335566555543
Q ss_pred C-----cccccCCC
Q 002600 795 N-----NLTGKIPS 803 (902)
Q Consensus 795 N-----~l~g~ip~ 803 (902)
- .+.|..|+
T Consensus 396 SLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 396 SLQHQLRLAGQMPA 409 (1255)
T ss_pred ehhhHHhhccCCcc
Confidence 2 35665554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.2e-31 Score=283.79 Aligned_cols=349 Identities=26% Similarity=0.380 Sum_probs=208.6
Q ss_pred cccccccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccc
Q 002600 104 KINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISW 183 (902)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 183 (902)
.+|.....++.++.|.|...++.. +|+.+++|.+|++|.+++|++. .+-..+..++.|+.+++.+|
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N----------- 88 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN----------- 88 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc-----------
Confidence 445555555555555555555543 2555555555555555555544 23334444555555555544
Q ss_pred cCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccC
Q 002600 184 LSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFG 263 (902)
Q Consensus 184 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 263 (902)
++... .++..+..+..|++||||+|++...|. .+..-+++-+|+||+|+|. .+|.- .+.+
T Consensus 89 ---------------~LKns-GiP~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~Ie-tIPn~--lfin 148 (1255)
T KOG0444|consen 89 ---------------NLKNS-GIPTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIE-TIPNS--LFIN 148 (1255)
T ss_pred ---------------ccccC-CCCchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCccc-cCCch--HHHh
Confidence 44322 233345555556666666666655543 3445555666666666654 23331 3445
Q ss_pred CCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeecccc---CCCCCccccCCCCccEE
Q 002600 264 LRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLREL---GGQIPTSFVRLCKLTSI 340 (902)
Q Consensus 264 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~---~~~~~~~l~~l~~L~~L 340 (902)
++.|-.|||++|++. .+|+.+..+..|++|+|++|.+...-...+..+++|+.|.+++. ...+|.++..+.+|..+
T Consensus 149 LtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 666666666666665 56666667777777777777665433344445556666666652 24567777777788888
Q ss_pred EccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEcc
Q 002600 341 DVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLF 420 (902)
Q Consensus 341 ~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 420 (902)
|++.|.+. .+|+.+..+. +|+.|+|++|+++.. ....+...+|++|++++|+++ .+|+++..++.|+.|.+.
T Consensus 228 DlS~N~Lp-~vPecly~l~-----~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 228 DLSENNLP-IVPECLYKLR-----NLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred cccccCCC-cchHHHhhhh-----hhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 88877764 3455555544 677777777776432 223445567777777777776 567777777777777777
Q ss_pred CCcCC-CCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCC
Q 002600 421 NNTLD-GAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGP 499 (902)
Q Consensus 421 ~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 499 (902)
+|+++ .-+|..++++.+|+++..++|.+. .+|+ .+..|.+|+.|.++.|.+.
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~NrLi------------------------- 352 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDHNRLI------------------------- 352 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccc-cCch-hhhhhHHHHHhccccccee-------------------------
Confidence 77664 236667777777777777777764 4555 5555665555555555543
Q ss_pred CCChhhcCCCCccEEEccCCcCC
Q 002600 500 QFPSWLRSQKHLFILDISNTRIS 522 (902)
Q Consensus 500 ~~~~~l~~~~~L~~L~Ls~N~l~ 522 (902)
.+|+.+.-++.|+.||+..|.-.
T Consensus 353 TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred echhhhhhcCCcceeeccCCcCc
Confidence 46777777777888888777544
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=5.5e-25 Score=222.92 Aligned_cols=381 Identities=21% Similarity=0.221 Sum_probs=246.8
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccC-CcCCCCcchhhcCCCCCCeEEc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFN-NTLDGAIPMSLGQLSHLELLDL 443 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 443 (902)
...+++|..|+|+...+..|+.+++|+.|||++|+|+.+-|.+|.++++|.+|-+.+ |+|+..-...|+++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 667888888998888888899999999999999999988899999998888877666 8888666678888999999999
Q ss_pred ccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCC------------CCCChhhcCCCCc
Q 002600 444 SNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLG------------PQFPSWLRSQKHL 511 (902)
Q Consensus 444 s~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~------------~~~~~~l~~~~~L 511 (902)
.-|++. -++...|..+++|..|.+.+|.+.......+.+...++.+.+..|.+. ...|..++.....
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 988887 566668999999999999999888888778888888888888877632 1122222222222
Q ss_pred cEEEccCCcCCCcCChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhccccccc
Q 002600 512 FILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNI 591 (902)
Q Consensus 512 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~l 591 (902)
.-..+.+.++...-+..+......+ ..--.+.....+..|. ..+..++++
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl---------------------------~s~~~~~d~~d~~cP~---~cf~~L~~L 276 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESL---------------------------PSRLSSEDFPDSICPA---KCFKKLPNL 276 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhH---------------------------HHhhccccCcCCcChH---HHHhhcccc
Confidence 2222333333222111111110000 0000111122222332 224456677
Q ss_pred ceEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccc
Q 002600 592 YVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAM 671 (902)
Q Consensus 592 l~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 671 (902)
+.++|++|+++++-+.+|.....+ ++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|
T Consensus 277 -~~lnlsnN~i~~i~~~aFe~~a~l-------~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 277 -RKLNLSNNKITRIEDGAFEGAAEL-------QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred -eEeccCCCccchhhhhhhcchhhh-------hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 888888888888888888877764 456788888887777778888888888888888888888888888887
Q ss_pred cccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEEC-------------------------------
Q 002600 672 AAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDI------------------------------- 720 (902)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL------------------------------- 720 (902)
..++.-.+++...+--....++...-. ........ .+..++.+++
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQ---SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCL 424 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCC-CCCCCCCC---CCchhccccchhccccccccCCccccCCCCCCCCCCCcchh
Confidence 776654444332221111111110000 00000000 0011122222
Q ss_pred ------CCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcC
Q 002600 721 ------SNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSY 794 (902)
Q Consensus 721 ------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 794 (902)
|++.+. .+|..+- ..-.+|++.+|.++ .+|++ .+.+| .+|+|+|+++..--..|.++++|.+|-|||
T Consensus 425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 222222 3333221 24567889999998 78886 67888 899999999877777888899999999988
Q ss_pred C
Q 002600 795 N 795 (902)
Q Consensus 795 N 795 (902)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 7
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.9e-21 Score=239.87 Aligned_cols=343 Identities=20% Similarity=0.240 Sum_probs=181.9
Q ss_pred cccCCCCCCEEECCCCc------CCCCCcccccCCC-CCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchh
Q 002600 383 QLGQFKSLHTLELRDNS------LSGPLPPALGELS-SMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEI 455 (902)
Q Consensus 383 ~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~ 455 (902)
.|..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~- 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD- 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc-
Confidence 45555666666554432 1223444444432 4666666666554 445444 3456666666666654 3333
Q ss_pred hhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChhHHhccCC
Q 002600 456 HFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQ 535 (902)
Q Consensus 456 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 535 (902)
.+..+++|+.++++++......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence 34556666666666554332222 23445566666666666555666666666666666666665444555543 3566
Q ss_pred CcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCCccccCCCc
Q 002600 536 YVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPN 615 (902)
Q Consensus 536 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l~~ 615 (902)
|+.|++++|...+.+|.. ..+|+.|++++|.+.. +|..+ .+.++ +.|++.++... .++..+..++.
T Consensus 706 L~~L~Lsgc~~L~~~p~~------~~nL~~L~L~~n~i~~-lP~~~-----~l~~L-~~L~l~~~~~~-~l~~~~~~l~~ 771 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI------STNISWLDLDETAIEE-FPSNL-----RLENL-DELILCEMKSE-KLWERVQPLTP 771 (1153)
T ss_pred CCEEeCCCCCCccccccc------cCCcCeeecCCCcccc-ccccc-----ccccc-ccccccccchh-hccccccccch
Confidence 666666666544444431 1246666666666543 33221 13334 55555543221 11111111100
Q ss_pred c-ceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCccccc
Q 002600 616 L-LVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVF 694 (902)
Q Consensus 616 L-~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 694 (902)
+ ..+..+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL----------------------- 827 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL----------------------- 827 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc-----------------------
Confidence 0 0001135667777777666777777777777777777765555556544 34444
Q ss_pred eeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCccc
Q 002600 695 EDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLS 774 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 774 (902)
+.|+|++|.....+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|++++|+--
T Consensus 828 ---------------------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 828 ---------------------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred ---------------------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 55666665444444432 245666666666665 45666666666666666653222
Q ss_pred ccCCccccCCCCCCeEECcCC
Q 002600 775 GKVPQSMSSLSFLNHLNLSYN 795 (902)
Q Consensus 775 ~~ip~~l~~l~~L~~L~Ls~N 795 (902)
..+|..+..++.|+.+++++|
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CccCcccccccCCCeeecCCC
Confidence 245555556666666666655
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.3e-20 Score=231.45 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=73.2
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLS 444 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 444 (902)
+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|++|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 56666666666666666666666666666666665444555544 5666666666666544444432 2456666666
Q ss_pred cccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCc
Q 002600 445 NNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTR 520 (902)
Q Consensus 445 ~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~ 520 (902)
+|.++ .+|. .+..+++|+.|++++| +-...+|..+..++.|+.+++++|.
T Consensus 855 ~n~i~-~iP~-si~~l~~L~~L~L~~C------------------------~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPW-WIEKFSNLSFLDMNGC------------------------NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChH-HHhcCCCCCEEECCCC------------------------CCcCccCcccccccCCCeeecCCCc
Confidence 66665 4554 4555555555555553 3223344445556666666666663
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=8.2e-21 Score=219.97 Aligned_cols=78 Identities=28% Similarity=0.329 Sum_probs=43.2
Q ss_pred EEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCC
Q 002600 716 RIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYN 795 (902)
Q Consensus 716 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 795 (902)
+.|++++|+|++ +|.. .++|+.|++++|+|+ .+|... .+|+.|++++|+|+ .+|..+..++.|+.|+|++|
T Consensus 385 ~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 385 KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 455556665552 3432 235556666666665 345432 34555666666665 45666666666666666666
Q ss_pred cccccCC
Q 002600 796 NLTGKIP 802 (902)
Q Consensus 796 ~l~g~ip 802 (902)
+|+|.+|
T Consensus 456 ~Ls~~~~ 462 (788)
T PRK15387 456 PLSERTL 462 (788)
T ss_pred CCCchHH
Confidence 6666544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.5e-20 Score=217.72 Aligned_cols=267 Identities=25% Similarity=0.366 Sum_probs=152.3
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLS 444 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 444 (902)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4556666666665 3454443 356677777776663 4432 356666666666666 34432 2456666666
Q ss_pred cccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCc
Q 002600 445 NNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDT 524 (902)
Q Consensus 445 ~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~ 524 (902)
+|.++ .+|. ..++|+.|++++|+ ++ .+|.. .++|+.|++++|++++
T Consensus 271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~------------------------Lt-~LP~~---p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 271 SNPLT-HLPA----LPSGLCKLWIFGNQ------------------------LT-SLPVL---PPGLQELSVSDNQLAS- 316 (788)
T ss_pred CCchh-hhhh----chhhcCEEECcCCc------------------------cc-ccccc---ccccceeECCCCcccc-
Confidence 66655 3332 11223333333333 22 11211 2345555555555542
Q ss_pred CChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhcccccccceEEEccCCccee
Q 002600 525 IPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSG 604 (902)
Q Consensus 525 ~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g 604 (902)
+|.. ..+|+.|++++|++++ +|. +| .++ +.|++++|+|++
T Consensus 317 Lp~l----p~~L~~L~Ls~N~L~~-LP~-------lp---------------------------~~L-q~LdLS~N~Ls~ 356 (788)
T PRK15387 317 LPAL----PSELCKLWAYNNQLTS-LPT-------LP---------------------------SGL-QELSVSDNQLAS 356 (788)
T ss_pred CCCC----cccccccccccCcccc-ccc-------cc---------------------------ccc-ceEecCCCccCC
Confidence 2321 1234444455554432 221 00 123 556666666653
Q ss_pred cCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccc
Q 002600 605 DIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAIS 684 (902)
Q Consensus 605 ~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 684 (902)
+|.... +++.|++++|++++ +|.. ..+|+.|++++|++++ +|... +.|
T Consensus 357 -LP~lp~----------~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~L------------- 404 (788)
T PRK15387 357 -LPTLPS----------ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SEL------------- 404 (788)
T ss_pred -CCCCCc----------ccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---cCC-------------
Confidence 333211 23456677777774 4432 2468888888888874 44322 222
Q ss_pred cccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCc
Q 002600 685 YIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIE 764 (902)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 764 (902)
+.|++++|++++ +|... .+|+.|++++|+|+ .+|..+.++++|+
T Consensus 405 -------------------------------~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 405 -------------------------------KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred -------------------------------CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCC
Confidence 778999999884 67543 46788999999998 7899899999999
Q ss_pred eEeCCCCcccccCCccccCC
Q 002600 765 SLDFSMNQLSGKVPQSMSSL 784 (902)
Q Consensus 765 ~LdLs~N~l~~~ip~~l~~l 784 (902)
.|+|++|+|++.+|..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 449 TVNLEGNPLSERTLQALREI 468 (788)
T ss_pred eEECCCCCCCchHHHHHHHH
Confidence 99999999999888877443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=6.2e-23 Score=208.10 Aligned_cols=290 Identities=21% Similarity=0.237 Sum_probs=158.0
Q ss_pred CCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCEEe
Q 002600 115 LIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLD 194 (902)
Q Consensus 115 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~ 194 (902)
-..++|..|+|+.+ .+..|+.+++||.||||+|+|+.+-|++|..+++|..|-+.+
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg----------------------- 124 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG----------------------- 124 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc-----------------------
Confidence 45678888888887 566788888999999999988888888888877776665544
Q ss_pred CCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccC
Q 002600 195 LSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSD 274 (902)
Q Consensus 195 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~ 274 (902)
+|+|+.++...|.++..|+.|.+.-|++...... .+..+++|..|.+.+
T Consensus 125 ----------------------------~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 125 ----------------------------NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYD 173 (498)
T ss_pred ----------------------------CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccc
Confidence 2444555555666666666666666666554444 566677777777777
Q ss_pred CcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHH
Q 002600 275 NEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQV 354 (902)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 354 (902)
|.+...--..+..+..++++.+..|.+-. ..+++.+.... ...|..++...-.....+.+.++....+..
T Consensus 174 n~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-----a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 174 NKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-----AMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-----hhchhhcccceecchHHHHHHHhcccchhh
Confidence 77763333367777788888877776431 11111111110 111222222222222223333332222221
Q ss_pred HHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcC
Q 002600 355 LDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQ 434 (902)
Q Consensus 355 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 434 (902)
+.... ..+.+-..+.+...+..|. ..|..+++|+.|+|++|++++.-+.+|.+
T Consensus 244 f~c~~----esl~s~~~~~d~~d~~cP~-----------------------~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 244 FLCSL----ESLPSRLSSEDFPDSICPA-----------------------KCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhhH----HhHHHhhccccCcCCcChH-----------------------HHHhhcccceEeccCCCccchhhhhhhcc
Confidence 11100 0000001111111122221 12455555555555555555555555555
Q ss_pred CCCCCeEEcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccC
Q 002600 435 LSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHL 497 (902)
Q Consensus 435 l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 497 (902)
...+++|.|..|++. .+....|.++..|++|++.+|+|+...+.+|.....|.+|.+-.|.+
T Consensus 297 ~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 297 AAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 555555555555554 44444555566666666666666666565665555566555555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=5e-18 Score=198.53 Aligned_cols=325 Identities=20% Similarity=0.259 Sum_probs=169.6
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCC---CCCCCCCCCCCCCccccc----------------eeecCCCCcEEEEEcCCCC
Q 002600 32 PNVGCVDSERQALLKLKQDLSDPS---NRLASWNIGDGDCCAWDG----------------VVCNNFTGHVLQLNLGNPN 92 (902)
Q Consensus 32 ~~~~~~~~~~~~ll~~k~~~~~~~---~~l~~W~~~~~~~c~w~g----------------v~c~~~~g~v~~L~L~~~~ 92 (902)
+.....++|.+.+++..+.+..|. ..-..|+. ++++|.-+. |.|. .+.|+.+...+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~ 132 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESE 132 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCC-CCcccccCCcchhhheeeecCCceEEecC--CCccccccccccc
Confidence 455577889999999999997763 12244873 778996443 6674 4567777766531
Q ss_pred CCCCC-------Cccc-----ccccc--------cc-----ccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccC
Q 002600 93 PNYGT-------GSKL-----VGKIN--------PS-----LFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSG 147 (902)
Q Consensus 93 ~~~~~-------~~~l-----~g~~~--------~~-----l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~ 147 (902)
..... .+.. ....+ .. -+-..+...|+++++.++.+ |..+. ++|+.|+|++
T Consensus 133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsL--P~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTI--PACIP--EQITTLILDN 208 (754)
T ss_pred ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcC--Ccccc--cCCcEEEecC
Confidence 10000 0000 00000 00 01123456677777766654 44432 4677777777
Q ss_pred CcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCC
Q 002600 148 AEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELH 227 (902)
Q Consensus 148 n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 227 (902)
|.++ .+|..+. ++|++|++++|.++..+..++ ..|+.|++++| .+.
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N--------------------------~L~ 254 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP-----DTIQEMELSIN--------------------------RIT 254 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccccCChhhh-----ccccEEECcCC--------------------------ccC
Confidence 7766 3444332 366666666665443322111 23444555544 444
Q ss_pred CCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCch
Q 002600 228 HFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPG 307 (902)
Q Consensus 228 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (902)
.++.. + .++|+.|++++|+++ .+|. .+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++.. |
T Consensus 255 ~LP~~-l--~s~L~~L~Ls~N~L~-~LP~---~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P- 320 (754)
T PRK15370 255 ELPER-L--PSALQSLDLFHNKIS-CLPE---NLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTAL-P- 320 (754)
T ss_pred cCChh-H--hCCCCEEECcCCccC-cccc---ccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccC-C-
Confidence 43321 1 124555555555544 2332 221 34555555555555 2333222 3455566666555421 1
Q ss_pred hccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCC
Q 002600 308 WLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQF 387 (902)
Q Consensus 308 ~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 387 (902)
..+ .++|+.|++++|.++. +|..+. ++|+.|++++|+++. +|..+ .
T Consensus 321 ---------------------~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-------~sL~~L~Ls~N~L~~-LP~~l--p 366 (754)
T PRK15370 321 ---------------------ETL--PPGLKTLEAGENALTS-LPASLP-------PELQVLDVSKNQITV-LPETL--P 366 (754)
T ss_pred ---------------------ccc--cccceeccccCCcccc-CChhhc-------CcccEEECCCCCCCc-CChhh--c
Confidence 111 1244455555555443 222221 156677777776653 44433 2
Q ss_pred CCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhh----cCCCCCCeEEcccccCc
Q 002600 388 KSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSL----GQLSHLELLDLSNNRLN 449 (902)
Q Consensus 388 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~N~l~ 449 (902)
++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..++.+..|++.+|.+.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 56777777777777 3455443 35777778888776 444433 34577788888888775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.9e-18 Score=199.46 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCc
Q 002600 390 LHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLN 449 (902)
Q Consensus 390 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 449 (902)
...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT 233 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc
Confidence 445555555555 2343332 34556666666655 3444332 35666666666554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.5e-18 Score=187.63 Aligned_cols=225 Identities=20% Similarity=0.212 Sum_probs=119.3
Q ss_pred CChhhcCCCCccEEEccCCcCCCcCChhHHhcc--CCCcEEecccccceeeCCCCC-CCCCCC-CCCcEEEccCCccccc
Q 002600 501 FPSWLRSQKHLFILDISNTRISDTIPRWFWNSI--SQYVYLNLSTNQIYGEIPNCD-RPLPLV-PSPGLLDLSNNALSGS 576 (902)
Q Consensus 501 ~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~-~~l~~~-~~L~~L~Ls~N~l~~~ 576 (902)
++..+..+++|+.|++++|.+.+..+..+.... ++|++|++++|++++.....+ ..++.+ +.|+.+++++|.+++.
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 345566678888899988888765554443211 237777777776653111100 111222 3455555555555543
Q ss_pred cchhHhhhcccccccceEEEccCCcceecCCccccCCCccceecccccEEEeecCcccc----ccCCCcCCCCCCCEEEe
Q 002600 577 IFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHG----SLPIQLCRLNSLQILDV 652 (902)
Q Consensus 577 ~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~L 652 (902)
.+..+...+..+..+ +.| ++++|.+++ .++..+..+++|+.|++
T Consensus 153 ~~~~~~~~~~~~~~L-~~L-------------------------------~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 153 SCEALAKALRANRDL-KEL-------------------------------NLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred HHHHHHHHHHhCCCc-CEE-------------------------------ECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 333333333333333 444 444444442 12223344467777777
Q ss_pred ecccccccccccccccccccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCcc
Q 002600 653 AHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKE 732 (902)
Q Consensus 653 s~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~ 732 (902)
++|.+++.....+... ...++.|+.|++++|.+++..+..
T Consensus 201 ~~n~i~~~~~~~l~~~----------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 201 NNNGLTDEGASALAET----------------------------------------LASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred cCCccChHHHHHHHHH----------------------------------------hcccCCCCEEecCCCcCchHHHHH
Confidence 7776654322211110 001123367777777776533322
Q ss_pred ccc-----cCCCCeEeccCCccc----cccCCCCcccCCCceEeCCCCccccc----CCccccCC-CCCCeEECcCCcc
Q 002600 733 LTN-----LMGLQSLNFSHNLFT----GKIPENIGNMRSIESLDFSMNQLSGK----VPQSMSSL-SFLNHLNLSYNNL 797 (902)
Q Consensus 733 l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l 797 (902)
+.. .+.|+.|++++|.++ ..+++.+..+++|+.+|+++|.++.. +...+... +.|+++|+.+|++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 222 367777888877776 23444555667788888888888744 44444444 5677777777764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.1e-17 Score=182.46 Aligned_cols=169 Identities=31% Similarity=0.380 Sum_probs=84.1
Q ss_pred CCCCccEEEccCCcCCC----CCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCcc
Q 002600 263 GLRNLVFFDLSDNEFHG----KIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLT 338 (902)
Q Consensus 263 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~ 338 (902)
.+++|++|++++|.++. .++..+...+++++++++++.+.+. +..+ ..++..+..+++|+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~---------------~~~~~~l~~~~~L~ 84 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL---------------QSLLQGLTKGCGLQ 84 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH---------------HHHHHHHHhcCcee
Confidence 44445566666555532 1333444555666666666555420 1000 12233445566666
Q ss_pred EEEccCcccCCcchHHHHhhcccccccccEEEccCcccCCc----ccccccCC-CCCCEEECCCCcCCCC----Cccccc
Q 002600 339 SIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGH----LTNQLGQF-KSLHTLELRDNSLSGP----LPPALG 409 (902)
Q Consensus 339 ~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~ 409 (902)
.|++++|.+.+..+..+..+... ++|++|++++|++.+. +...+..+ ++|++|++++|.+++. ++..+.
T Consensus 85 ~L~l~~~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 85 ELDLSDNALGPDGCGVLESLLRS--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred EEEccCCCCChhHHHHHHHHhcc--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 66666666665555555444421 3466666666665421 22233344 5666666666666532 222334
Q ss_pred CCCCCCEEEccCCcCCCC----cchhhcCCCCCCeEEcccccCc
Q 002600 410 ELSSMKNLDLFNNTLDGA----IPMSLGQLSHLELLDLSNNRLN 449 (902)
Q Consensus 410 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 449 (902)
.+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 445566666666555532 2223334445555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5e-17 Score=146.60 Aligned_cols=159 Identities=30% Similarity=0.522 Sum_probs=136.3
Q ss_pred eEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeeccccccccccccccccccc
Q 002600 593 VYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMA 672 (902)
Q Consensus 593 ~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 672 (902)
+.|.+|+|+++ .+|..+..+.+|+ .|++.+|+++ ..|.+++.+++|+.|+++-|++. ..|+.|+.++.|
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nle-------vln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l- 104 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLE-------VLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL- 104 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhh-------hhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-
Confidence 67888899988 5676777777654 5678999998 67888999999999999999987 788999888887
Q ss_pred ccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccc-cCCccccccCCCCeEeccCCcccc
Q 002600 673 AANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSG-EVPKELTNLMGLQSLNFSHNLFTG 751 (902)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~ 751 (902)
+.|||++|++.. .+|..|..+..|+.|+|+.|.+.
T Consensus 105 -------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe- 140 (264)
T KOG0617|consen 105 -------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE- 140 (264)
T ss_pred -------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-
Confidence 888999998875 68888999999999999999998
Q ss_pred ccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCCcccccCCCCCcC
Q 002600 752 KIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSSTQL 807 (902)
Q Consensus 752 ~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 807 (902)
.+|..++++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|.++-..|..+++
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 78888999999999999999998 78999999999999999999998777765544
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=8.5e-15 Score=171.32 Aligned_cols=115 Identities=35% Similarity=0.665 Sum_probs=102.6
Q ss_pred eEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcC
Q 002600 715 VRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSY 794 (902)
Q Consensus 715 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 794 (902)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCC--cCCCCCccccCCC-CCCCCCC-CCCC
Q 002600 795 NNLTGKIPSST--QLQSMDASSFAGN-NLCGAPL-PNCP 829 (902)
Q Consensus 795 N~l~g~ip~~~--~~~~~~~~~~~~N-~lcg~~~-~~c~ 829 (902)
|+++|.+|..- .+.......+.+| .+||.|. ..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999742 1223344568899 8998764 3674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-15 Score=137.06 Aligned_cols=163 Identities=28% Similarity=0.495 Sum_probs=94.2
Q ss_pred CCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCC
Q 002600 236 NFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDL 315 (902)
Q Consensus 236 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 315 (902)
++++++.|.|++|+++.. |. .+..+.+|+.|++.+|++. .+|..++.+++|++|+++-|++
T Consensus 31 ~~s~ITrLtLSHNKl~~v-pp---nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-------------- 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PP---NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-------------- 91 (264)
T ss_pred chhhhhhhhcccCceeec-CC---cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--------------
Confidence 344445555555555422 22 3555666666666666665 5566666666666666666655
Q ss_pred CeeeccccCCCCCccccCCCCccEEEccCcccCC-cchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEE
Q 002600 316 EFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQ-DLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLE 394 (902)
Q Consensus 316 ~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 394 (902)
...|..|+.++.|+.||+++|++.. ..|..+..+. .|+.|++++|.+ ..+|..++++++|+.|.
T Consensus 92 ---------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~-----tlralyl~dndf-e~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 92 ---------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDF-EILPPDVGKLTNLQILS 156 (264)
T ss_pred ---------hcCccccCCCchhhhhhccccccccccCCcchhHHH-----HHHHHHhcCCCc-ccCChhhhhhcceeEEe
Confidence 3456666666666666666666543 2344333333 555666666665 34555566666666666
Q ss_pred CCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcC
Q 002600 395 LRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQ 434 (902)
Q Consensus 395 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 434 (902)
+.+|.+. .+|..++.++.|++|.+.+|+++ .+|+.+++
T Consensus 157 lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred eccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 6666665 45666666666666666666666 45544443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=5.2e-13 Score=156.35 Aligned_cols=129 Identities=34% Similarity=0.565 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCc----cccceeecC--CCC--cEEEEEcCCCCCCCCCCccccccc
Q 002600 34 VGCVDSERQALLKLKQDLSDPSNRLASWNIGDGDCC----AWDGVVCNN--FTG--HVLQLNLGNPNPNYGTGSKLVGKI 105 (902)
Q Consensus 34 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~~c----~w~gv~c~~--~~g--~v~~L~L~~~~~~~~~~~~l~g~~ 105 (902)
..+.++|.+||+++|+++.++.. .+|+ +.+|| .|.||+|.. ..+ +|+.|+|+++ .+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~g~i 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLRGFI 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCC--------CccccC
Confidence 34677899999999999976542 4796 44443 799999952 222 5999999985 789999
Q ss_pred cccccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccc
Q 002600 106 NPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYE 175 (902)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~ 175 (902)
|+.++++++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+.
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 99999999999999999999985 8999999999999999999999999999999999999999998653
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.4e-12 Score=139.51 Aligned_cols=173 Identities=31% Similarity=0.486 Sum_probs=124.5
Q ss_pred CcEEEccCCccccccchhHhhhcccccccceEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcC
Q 002600 563 PGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLC 642 (902)
Q Consensus 563 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~ 642 (902)
-...|++.|++.. +|..++. +..+ +.+.|.+|.+. .+|+++.++..|. +++|+.|+++ ..|..++
T Consensus 77 t~~aDlsrNR~~e-lp~~~~~----f~~L-e~liLy~n~~r-~ip~~i~~L~~lt-------~l~ls~NqlS-~lp~~lC 141 (722)
T KOG0532|consen 77 TVFADLSRNRFSE-LPEEACA----FVSL-ESLILYHNCIR-TIPEAICNLEALT-------FLDLSSNQLS-HLPDGLC 141 (722)
T ss_pred hhhhhcccccccc-CchHHHH----HHHH-HHHHHHhccce-ecchhhhhhhHHH-------Hhhhccchhh-cCChhhh
Confidence 3456666666654 3433333 2334 66777788877 6777777777654 4667888887 5666777
Q ss_pred CCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCC
Q 002600 643 RLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISN 722 (902)
Q Consensus 643 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~ 722 (902)
.++ |+.|-+++|+++ .+|..++.+..| ..||.|.
T Consensus 142 ~lp-Lkvli~sNNkl~-~lp~~ig~~~tl--------------------------------------------~~ld~s~ 175 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLT-SLPEEIGLLPTL--------------------------------------------AHLDVSK 175 (722)
T ss_pred cCc-ceeEEEecCccc-cCCcccccchhH--------------------------------------------HHhhhhh
Confidence 765 788888888886 566666654444 6678888
Q ss_pred CcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCCccccc
Q 002600 723 NNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGK 800 (902)
Q Consensus 723 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 800 (902)
|++. .+|..++++.+|+.|++..|++. ..|+.+..|+ |..||+|+|+++ .||..|..|..|++|-|.+|+|..+
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 8887 67778888888888888888887 5677777655 778888888887 7888888888888888888888753
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3e-11 Score=125.72 Aligned_cols=188 Identities=26% Similarity=0.237 Sum_probs=97.7
Q ss_pred cCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCC--CCCCCCCCCCcEEeccCCccccccccccccCCC
Q 002600 110 FDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVI--PHQLGNISNLQYLDLSKSYYELQVESISWLSGL 187 (902)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l 187 (902)
.+++.|+...|.+..+.....-.....|++++.||||+|-+.... -.....+++|+.|+++.|.+......... ..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence 456666666666665554321134456677777777776555321 12334566677777776654332222111 145
Q ss_pred CCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCc
Q 002600 188 SFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNL 267 (902)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L 267 (902)
+.|+.|.++.|.++. .++...+..+|+|+.|+|..|............+..|+.|||++|.+-... .. ...+.++.|
T Consensus 197 ~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~-~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QG-YKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-cc-cccccccch
Confidence 566666666666652 233334455666666666666543333444445556666666666543211 10 134455666
Q ss_pred cEEEccCCcCCCC-CCcC-----CCCCCCCCEEEccCCcC
Q 002600 268 VFFDLSDNEFHGK-IPSG-----LGNLTFLRHLDLSSNEF 301 (902)
Q Consensus 268 ~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l 301 (902)
+.|+++.|++... +|+. ...+++|++|++..|++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6666666655532 2222 23445555555555555
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.2e-11 Score=132.41 Aligned_cols=178 Identities=30% Similarity=0.489 Sum_probs=96.2
Q ss_pred CccEEEccCCcCCCcCChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccCCccccccchhHhhhccccc
Q 002600 510 HLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEAD 589 (902)
Q Consensus 510 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~ 589 (902)
.-...|++.|++. ++|..+.. +..|+.+.+.+|.+. .+|.++..+ .
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L-------------------------------~ 121 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNL-------------------------------E 121 (722)
T ss_pred chhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhh-------------------------------h
Confidence 3345666666666 55554432 345666666666664 333332222 2
Q ss_pred ccceEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccc
Q 002600 590 NIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFT 669 (902)
Q Consensus 590 ~ll~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 669 (902)
.+ .++||+.|+++ .+|..+..++ |+.|.+++|+++ .+|..++....|..||.+.|++. .+|..++++.
T Consensus 122 ~l-t~l~ls~NqlS-~lp~~lC~lp--------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~ 189 (722)
T KOG0532|consen 122 AL-TFLDLSSNQLS-HLPDGLCDLP--------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT 189 (722)
T ss_pred HH-HHhhhccchhh-cCChhhhcCc--------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence 22 44445555544 3444444443 455666666665 45555666666666666666665 3455555555
Q ss_pred cccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCcc
Q 002600 670 AMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLF 749 (902)
Q Consensus 670 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 749 (902)
+| +.|.+..|++. .+|+++..| .|..||+|+|++
T Consensus 190 sl--------------------------------------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 190 SL--------------------------------------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred HH--------------------------------------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 55 44555556555 445555533 355566666666
Q ss_pred ccccCCCCcccCCCceEeCCCCcccccCCccc
Q 002600 750 TGKIPENIGNMRSIESLDFSMNQLSGKVPQSM 781 (902)
Q Consensus 750 ~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l 781 (902)
+ .||..|.+|+.|++|-|.+|.|. ..|..+
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 6 56666666666666666666665 444443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-11 Score=125.21 Aligned_cols=180 Identities=27% Similarity=0.265 Sum_probs=84.3
Q ss_pred ccccccccCCCCCCeEeCCCCCCCCC---CCCccccCCCCCCEEeccCCcCCC----CCCCCCCCCCCCcEEeccCCccc
Q 002600 103 GKINPSLFDLKHLIHLDLSDNDFQGI---QTPSYLGSLKNLRYLNLSGAEFAG----VIPHQLGNISNLQYLDLSKSYYE 175 (902)
Q Consensus 103 g~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~~~ 175 (902)
+.+-+.+.....++.++|++|.+..- .+...+.+.+.|+..++|+- ++| .+|+.+..
T Consensus 20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~--------------- 83 (382)
T KOG1909|consen 20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKM--------------- 83 (382)
T ss_pred hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHH---------------
Confidence 33445566777788888888876531 02233455667777777653 222 23322110
Q ss_pred cccccccccCCCCCCCEEeCCCCcCCCC--CCcccccCCCCCCCEEECCCCCCCCCCCC-------------CCCCCCCC
Q 002600 176 LQVESISWLSGLSFLEHLDLSLVDLTKS--SDGLVTINSLPSLKVLKLSYCELHHFPSL-------------PSTNFSSL 240 (902)
Q Consensus 176 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-------------~l~~l~~L 240 (902)
-.+.+..+++|+++|||.|-+... +..-.-+.++..|++|.|.+|.+...... ....-++|
T Consensus 84 ----l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~L 159 (382)
T KOG1909|consen 84 ----LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKL 159 (382)
T ss_pred ----HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcce
Confidence 001223333444444444433321 22222344556666666666655433221 12233456
Q ss_pred CeEecCCCcCCCcccc-ccccccCCCCccEEEccCCcCCCC----CCcCCCCCCCCCEEEccCCcCC
Q 002600 241 KALDLSGNHFNNSLFQ-YSSWVFGLRNLVFFDLSDNEFHGK----IPSGLGNLTFLRHLDLSSNEFN 302 (902)
Q Consensus 241 ~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 302 (902)
+++....|++.+.-.. +...+...+.|+.+.+..|.+... +...+..+++|+.|||.+|.++
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 6666666655432111 111233445555555555554321 1123445566666666666554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.1e-10 Score=121.49 Aligned_cols=140 Identities=26% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCCcEEeccCCccccccccccccCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCC-CCCCC
Q 002600 160 NISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLP-STNFS 238 (902)
Q Consensus 160 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~ 238 (902)
++.+|+...|.++.+...... .....|++++.||||.|-+............+|+|+.|+|+.|.+....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455555555555543322222 3345566666666666666655555555667777777777777766544322 23567
Q ss_pred CCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCC
Q 002600 239 SLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFN 302 (902)
Q Consensus 239 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 302 (902)
+|+.|.++.|.++..... .....+|+|+.|+|..|............++.|+.|||++|++-
T Consensus 198 ~lK~L~l~~CGls~k~V~--~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQ--WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhheEEeccCCCCHHHHH--HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 788888888877632211 13446788888888888533333334455677888888887764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=3.8e-10 Score=108.04 Aligned_cols=131 Identities=27% Similarity=0.356 Sum_probs=36.7
Q ss_pred cCCCCCCeEeCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCC
Q 002600 110 FDLKHLIHLDLSDNDFQGIQTPSYLG-SLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLS 188 (902)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~ 188 (902)
.+..++++|+|.+|.|+.+ +.++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|.++..... +.
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~---l~--- 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG---LD--- 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH---HH---
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc---hH---
Confidence 3445677777777777765 2334 467777777777777643 2466667777777776655432211 10
Q ss_pred CCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCeEecCCCcCCCccccccccccCCCCc
Q 002600 189 FLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS-LPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNL 267 (902)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L 267 (902)
..+|+|++|++++|+|..+.. ..+..+++|++|++.+|.++..--.-...+..+|+|
T Consensus 85 ----------------------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 85 ----------------------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp ----------------------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred ----------------------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 124444444444444444332 234455566666666665543211111134567777
Q ss_pred cEEEcc
Q 002600 268 VFFDLS 273 (902)
Q Consensus 268 ~~L~L~ 273 (902)
+.||-.
T Consensus 143 k~LD~~ 148 (175)
T PF14580_consen 143 KVLDGQ 148 (175)
T ss_dssp SEETTE
T ss_pred heeCCE
Confidence 777643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.1e-09 Score=122.92 Aligned_cols=154 Identities=38% Similarity=0.564 Sum_probs=107.3
Q ss_pred eEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeeccccccccccccccccccc
Q 002600 593 VYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMA 672 (902)
Q Consensus 593 ~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 672 (902)
+.|++++|++. .+|..++.+++| +.|++++|+++ .+|...+..++|+.|++++|+++. +|........|
T Consensus 143 ~~L~l~~N~i~-~l~~~~~~l~~L-------~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L- 211 (394)
T COG4886 143 KELDLSDNKIE-SLPSPLRNLPNL-------KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSAL- 211 (394)
T ss_pred ccccccccchh-hhhhhhhccccc-------cccccCCchhh-hhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhh-
Confidence 56666666665 344445555654 44667777777 344444467788888888888873 44433333333
Q ss_pred ccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccc
Q 002600 673 AANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGK 752 (902)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 752 (902)
+.|++++|++. .++..+.++..+..|.+++|++. .
T Consensus 212 -------------------------------------------~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 212 -------------------------------------------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred -------------------------------------------hhhhhcCCcce-ecchhhhhcccccccccCCceee-e
Confidence 67788888644 56677888888888888888887 4
Q ss_pred cCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCCcccccCCCC
Q 002600 753 IPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSS 804 (902)
Q Consensus 753 ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 804 (902)
+|..++.+++++.|++++|+++ .++. +..+..++.|++++|.++...|..
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 4777888888888888888888 4444 778888888888888888776643
No 32
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.88 E-value=2.1e-09 Score=77.10 Aligned_cols=41 Identities=49% Similarity=0.993 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhhhcCC-CCCCCCCCCCCCC-CCCccccceeec
Q 002600 37 VDSERQALLKLKQDLS-DPSNRLASWNIGD-GDCCAWDGVVCN 77 (902)
Q Consensus 37 ~~~~~~~ll~~k~~~~-~~~~~l~~W~~~~-~~~c~w~gv~c~ 77 (902)
.++|++||++||+++. +|.+.+.+|+..+ .+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 3689999999999998 5778999998532 799999999995
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=5.3e-10 Score=113.59 Aligned_cols=185 Identities=20% Similarity=0.215 Sum_probs=84.4
Q ss_pred ccCCCCccEEEccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccC
Q 002600 331 FVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGE 410 (902)
Q Consensus 331 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 410 (902)
+..+++|+.++||.|.+....+..+..+-.. ...|++|.|.+|.+...--..++. .|..|. .+ .....
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~ 155 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAAS 155 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCC
Confidence 3445567777777777665555444433221 225666666666542211111110 011110 00 01122
Q ss_pred CCCCCEEEccCCcCCCC----cchhhcCCCCCCeEEcccccCccc---cchhhhccCccccEEEccCceeeEEeCCCCCC
Q 002600 411 LSSMKNLDLFNNTLDGA----IPMSLGQLSHLELLDLSNNRLNGT---LSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVP 483 (902)
Q Consensus 411 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 483 (902)
-+.|+++...+|++... +...|...+.|+.+.+..|.|... .-...+..+++|+.|++.+|-++.....
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---- 231 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---- 231 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH----
Confidence 34566666666665422 223444556666666666665421 1112445555555555555544322111
Q ss_pred cccccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChhHHh----ccCCCcEEecccccce
Q 002600 484 PFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWN----SISQYVYLNLSTNQIY 547 (902)
Q Consensus 484 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~----~~~~L~~L~Ls~N~l~ 547 (902)
.+...+...++|+.|++++|.+.......+.. ..++|+.|++.+|.++
T Consensus 232 ----------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 232 ----------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ----------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 12233444456666666666666444433322 2334444444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=1.2e-09 Score=104.60 Aligned_cols=104 Identities=29% Similarity=0.271 Sum_probs=47.2
Q ss_pred CCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCc
Q 002600 188 SFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNL 267 (902)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L 267 (902)
.+|+.|++++|.++.++ .+..++.|++|++++|.|+.+.......+++|++|++++|+|...- ....+..+++|
T Consensus 42 ~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L 115 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKL 115 (175)
T ss_dssp TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCC--CCGGGGG-TT-
T ss_pred cCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCc
Confidence 34444444444454432 3556788899999999988875422246899999999999997532 12367789999
Q ss_pred cEEEccCCcCCCCCCc----CCCCCCCCCEEEccC
Q 002600 268 VFFDLSDNEFHGKIPS----GLGNLTFLRHLDLSS 298 (902)
Q Consensus 268 ~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~ 298 (902)
++|+|.+|.++.. +. .+..+|+|+.||-..
T Consensus 116 ~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 116 RVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred ceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 9999999998743 22 345789999998643
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=6.1e-09 Score=116.96 Aligned_cols=36 Identities=39% Similarity=0.549 Sum_probs=15.9
Q ss_pred CCCCCEEeccCCcCCCCCCCCCCCCC-CCcEEeccCCc
Q 002600 137 LKNLRYLNLSGAEFAGVIPHQLGNIS-NLQYLDLSKSY 173 (902)
Q Consensus 137 l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~ 173 (902)
++.++.|++.+|.++ .+|.....+. +|+.|++++|.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~ 151 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK 151 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccc
Confidence 344555555555444 2333333332 44444444443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=3e-09 Score=83.60 Aligned_cols=59 Identities=39% Similarity=0.572 Sum_probs=29.7
Q ss_pred CCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCCc
Q 002600 738 GLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNN 796 (902)
Q Consensus 738 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 796 (902)
+|++|++++|+++...++.|.++++|++||+++|+++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333445555555555555555554444455555555555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.8e-09 Score=83.01 Aligned_cols=60 Identities=32% Similarity=0.514 Sum_probs=56.5
Q ss_pred ceEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcc
Q 002600 714 LVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQL 773 (902)
Q Consensus 714 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 773 (902)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999988778999999999999999999988889999999999999999986
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.3e-09 Score=106.17 Aligned_cols=129 Identities=26% Similarity=0.234 Sum_probs=78.0
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLS 444 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 444 (902)
.|+++||++|.++. +.++..-.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+-.+-.++-+.++|.|+
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 56666666666632 334445556677777777776632 23666667777777777666 333444556666777777
Q ss_pred cccCccccchhhhccCccccEEEccCceeeEE-eCCCCCCcccccccccccccCCCC
Q 002600 445 NNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFK-VNQSWVPPFQLEKLRLRSCHLGPQ 500 (902)
Q Consensus 445 ~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~ 500 (902)
+|.+. .+. .+..+-+|..||+++|++... ....+..++.|+++.+.+|.+.+.
T Consensus 361 ~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 77664 222 355566667777777766433 234455666777777777777643
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=3.3e-09 Score=105.03 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=99.0
Q ss_pred ccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCc
Q 002600 382 NQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLT 461 (902)
Q Consensus 382 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~ 461 (902)
..+..++.|+++||++|.|+ .+.++..-.+.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+.. +-..+.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG 352 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG 352 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence 34445678888888888887 566677777888888888888873 3 34778888888888888886 3333 456677
Q ss_pred cccEEEccCceeeEEeCCCCCCcccccccccccccCCCC-CChhhcCCCCccEEEccCCcCCC
Q 002600 462 KLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQ-FPSWLRSQKHLFILDISNTRISD 523 (902)
Q Consensus 462 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~N~l~~ 523 (902)
+.++|.+++|.+.... .+..+.+|..||+++|++... --..+++++.|+.+.+.+|.+.+
T Consensus 353 NIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888888888764332 233456788888888888653 33467788888888888888874
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=5.3e-09 Score=125.22 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=49.2
Q ss_pred CCCeEeCCCCC--CCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCC
Q 002600 114 HLIHLDLSDND--FQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLE 191 (902)
Q Consensus 114 ~L~~L~Ls~n~--l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 191 (902)
.|++|-+.+|. +..+ ..++|..++.|++|||++|.--+.+|..+++|.+||+|+++++.++..|.. ++++..|.
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~---l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG---LGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH---HHHHHhhh
Confidence 57777777664 4443 344566777777777777766667777777777777777777654422222 33344444
Q ss_pred EEeCCCC
Q 002600 192 HLDLSLV 198 (902)
Q Consensus 192 ~L~Ls~n 198 (902)
+|++..+
T Consensus 622 ~Lnl~~~ 628 (889)
T KOG4658|consen 622 YLNLEVT 628 (889)
T ss_pred eeccccc
Confidence 4444433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=3e-08 Score=118.84 Aligned_cols=128 Identities=30% Similarity=0.361 Sum_probs=95.9
Q ss_pred CCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCC--CCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCC
Q 002600 187 LSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCE--LHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGL 264 (902)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 264 (902)
....+...+-+|.+..... -..++.|++|-+..|. +...+...|..++.|++|||++|.--+.+|. .++.+
T Consensus 522 ~~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~---~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS---SIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh---HHhhh
Confidence 3445555555555544321 1244578888888886 6666666788889999999998876666777 88888
Q ss_pred CCccEEEccCCcCCCCCCcCCCCCCCCCEEEccCCcCCCCCchhccCCCCCCeeeccc
Q 002600 265 RNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRE 322 (902)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 322 (902)
-+|++|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 89999999999888 8888899999999999988876666677777788888888765
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=8.1e-09 Score=116.08 Aligned_cols=173 Identities=34% Similarity=0.398 Sum_probs=106.0
Q ss_pred CCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCC
Q 002600 111 DLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFL 190 (902)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 190 (902)
.+..++.+++..|.+..+ -..+..+++|++|++.+|++... ...+..+++|++|++++|.++ .+..+..++.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~----~i~~l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT----KLEGLSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc----cccchhhccch
Confidence 456666666777776652 33456677777777777777643 223666777777777777543 33345566667
Q ss_pred CEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCeEecCCCcCCCccccccccccCCCCccE
Q 002600 191 EHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS-LPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVF 269 (902)
Q Consensus 191 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 269 (902)
+.|++++|.++.... +..++.|+.+++++|.+..+.. . ...+.+++.+++.+|.+.... .+..+..+..
T Consensus 143 ~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-----~~~~~~~l~~ 212 (414)
T KOG0531|consen 143 KELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-----GLDLLKKLVL 212 (414)
T ss_pred hhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-----chHHHHHHHH
Confidence 777777777766432 3447777777777777776665 3 466677777777777664211 2333444555
Q ss_pred EEccCCcCCCCCCcCCCCCC--CCCEEEccCCcCC
Q 002600 270 FDLSDNEFHGKIPSGLGNLT--FLRHLDLSSNEFN 302 (902)
Q Consensus 270 L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~ 302 (902)
+++..|.++..-+ +..+. +|+.+++++|.+.
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence 5666666652221 12222 2677777777765
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=2.6e-08 Score=111.93 Aligned_cols=130 Identities=30% Similarity=0.387 Sum_probs=69.6
Q ss_pred CCCCCCcEEeccCCccccccccccccCCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q 002600 159 GNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFS 238 (902)
Q Consensus 159 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 238 (902)
..+..++.+.+..|.+.. ....+..+++|+.|++..|++..+... +..+++|++|++++|.|+.+.+ +..++
T Consensus 69 ~~l~~l~~l~l~~n~i~~---~~~~l~~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~--l~~l~ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK---ILNHLSKLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEG--LSTLT 140 (414)
T ss_pred HHhHhHHhhccchhhhhh---hhcccccccceeeeeccccchhhcccc---hhhhhcchheeccccccccccc--hhhcc
Confidence 345666666677665432 122255666777777777777664332 4456666666666666666543 34444
Q ss_pred CCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCCC-cCCCCCCCCCEEEccCCcCC
Q 002600 239 SLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKIP-SGLGNLTFLRHLDLSSNEFN 302 (902)
Q Consensus 239 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 302 (902)
.|+.|++++|.++..- .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 141 ~L~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 5666666666554211 23335555555555555553222 1 244445555555555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-09 Score=107.65 Aligned_cols=181 Identities=28% Similarity=0.219 Sum_probs=105.8
Q ss_pred CCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCE
Q 002600 113 KHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEH 192 (902)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 192 (902)
+.|++|||++..++..+....+..|.+|+.|.|.++++.+.+...+++-.+|+.|+++.+.--.....--.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36899999998887655556678899999999999999988888899999999999988731100011113566777777
Q ss_pred EeCCCCcCCCCCCcccccC-CCCCCCEEECCCCCCCCCC---CCCCCCCCCCCeEecCCC-cCCCccccccccccCCCCc
Q 002600 193 LDLSLVDLTKSSDGLVTIN-SLPSLKVLKLSYCELHHFP---SLPSTNFSSLKALDLSGN-HFNNSLFQYSSWVFGLRNL 267 (902)
Q Consensus 193 L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L 267 (902)
|+++.+.+.... ....+. --++|+.|+|+++.-.-.. ..-...+++|.+|||+.| .++..... .+.+++.|
T Consensus 265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~---~~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFKFNYL 340 (419)
T ss_pred cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---HHHhcchh
Confidence 777777655421 111111 1245666666665311100 011234556666666654 23332222 45556666
Q ss_pred cEEEccCCcCCCCCCcC---CCCCCCCCEEEccCC
Q 002600 268 VFFDLSDNEFHGKIPSG---LGNLTFLRHLDLSSN 299 (902)
Q Consensus 268 ~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n 299 (902)
++|.++.|.. .+|.. +...+.|.+|+..++
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6666665542 23332 234455555555544
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=1.4e-08 Score=89.14 Aligned_cols=86 Identities=23% Similarity=0.352 Sum_probs=56.5
Q ss_pred EEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcCC
Q 002600 716 RIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYN 795 (902)
Q Consensus 716 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N 795 (902)
+.|+|++|.++ .+|+++..++.|+.||+++|.+. ..|..+..|.++-.||.-+|.+- .||..+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 66777777777 66777777777777777777777 55666666777777777777776 55555433333444555666
Q ss_pred cccccCCCC
Q 002600 796 NLTGKIPSS 804 (902)
Q Consensus 796 ~l~g~ip~~ 804 (902)
++.+.-|..
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 666665543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.9e-08 Score=111.10 Aligned_cols=128 Identities=29% Similarity=0.363 Sum_probs=95.2
Q ss_pred cccEEEeecCccccccCCCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCccccceeeEEEe
Q 002600 622 GLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVT 701 (902)
Q Consensus 622 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (902)
.|.+.+.++|.+. .+..++.-++.|+.|||++|+++..- .+..+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l--------------------------------- 208 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRL--------------------------------- 208 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhc---------------------------------
Confidence 4666777888887 55666777888889999999887432 33333
Q ss_pred ccceeehhhhccceEEEECCCCcccccCCc-cccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCC-c
Q 002600 702 KGFMVEYNTILNLVRIMDISNNNFSGEVPK-ELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVP-Q 779 (902)
Q Consensus 702 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip-~ 779 (902)
+.|+.|||++|.++ .+|. ....++ |+.|++++|.++. + ..+.+|++|+-||||+|-|++.-. .
T Consensus 209 -----------~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 209 -----------PKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred -----------ccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhh
Confidence 34499999999998 4453 334444 9999999999983 3 357899999999999999986532 2
Q ss_pred cccCCCCCCeEECcCCccccc
Q 002600 780 SMSSLSFLNHLNLSYNNLTGK 800 (902)
Q Consensus 780 ~l~~l~~L~~L~Ls~N~l~g~ 800 (902)
-+..|.+|..|+|.+|++.+.
T Consensus 274 pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 274 PLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHHHHHHHHHhhcCCccccC
Confidence 245678899999999998764
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=8.2e-08 Score=106.19 Aligned_cols=129 Identities=29% Similarity=0.276 Sum_probs=93.2
Q ss_pred CccEEEccCcccCCcchHHHHhhcccccccccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCC
Q 002600 336 KLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMK 415 (902)
Q Consensus 336 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 415 (902)
.|...+.++|.+.- +...+..++ .++.|+|++|+++..- .+..++.|++|||+.|.+.....-....+. |.
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~-----ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLP-----ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHH-----HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence 56677777777642 233444444 7889999999886653 677889999999999988843222333444 89
Q ss_pred EEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEEccCceeeE
Q 002600 416 NLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIF 475 (902)
Q Consensus 416 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~ 475 (902)
.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-.-..+..+..|+.|.|.+|++-.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999988732 3567888899999999988765444467778888888888888754
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.5e-07 Score=92.11 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCCCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcC
Q 002600 185 SGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHF 250 (902)
Q Consensus 185 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 250 (902)
..++.++.+||.+|.++...++...+.++|.|+.|+|+.|.+...+...-....+|++|-|.+..+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 346677777888888887777777777788888888888777654432113445566666655544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=1.5e-07 Score=92.28 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=21.0
Q ss_pred ccCCCCCCeEeCCCCCCCCC---CCCccccCCCCCCEEeccC
Q 002600 109 LFDLKHLIHLDLSDNDFQGI---QTPSYLGSLKNLRYLNLSG 147 (902)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~Ls~ 147 (902)
+..+..+..+|||+|.|..- .+...+.+-.+|+..+++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 33466677777777766542 0112234445666666654
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-07 Score=94.63 Aligned_cols=180 Identities=23% Similarity=0.242 Sum_probs=99.1
Q ss_pred cccEEEccCcccCCc-ccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCc-CCCC-cchhhcCCCCCCeE
Q 002600 365 ALESLVLSGCHICGH-LTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNT-LDGA-IPMSLGQLSHLELL 441 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L 441 (902)
.|++|||++-.++.. +...+..|.+|+.|.+.++++.+.+...++...+|+.|+++.+. ++.. ..-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466677766655432 12234456666666666666666655556666666666666543 2211 11233455666666
Q ss_pred EcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCC---CCCChhhcCCCCccEEEccC
Q 002600 442 DLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLG---PQFPSWLRSQKHLFILDISN 518 (902)
Q Consensus 442 ~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~~~~L~~L~Ls~ 518 (902)
+++.|.+..+.-...+... ..+|..|+|+++.-. ..+..-...+++|..||||+
T Consensus 266 NlsWc~l~~~~Vtv~V~hi-----------------------se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHI-----------------------SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred CchHhhccchhhhHHHhhh-----------------------chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 6666655433221111111 224555555554311 12223345688899999998
Q ss_pred Cc-CCCcCChhHHhccCCCcEEecccccceeeCCCCCCCCCCCCCCcEEEccC
Q 002600 519 TR-ISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSN 570 (902)
Q Consensus 519 N~-l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~ 570 (902)
|. ++...-..+ ..++.|++|.++.|. +.+|..+-.+...|++.+||+.+
T Consensus 323 ~v~l~~~~~~~~-~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 323 SVMLKNDCFQEF-FKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ccccCchHHHHH-Hhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 84 333222223 346788888888875 45666665666666777777654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=5.5e-07 Score=88.51 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=16.4
Q ss_pred cccEEEccCcccCCcc----cccccCCCCCCEEECCCCcCC
Q 002600 365 ALESLVLSGCHICGHL----TNQLGQFKSLHTLELRDNSLS 401 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~ 401 (902)
+|+.||+..|.++... ...+..++.|++|.+.+|-++
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 4555555555443221 122333444555555555444
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=6.9e-06 Score=58.89 Aligned_cols=36 Identities=33% Similarity=0.643 Sum_probs=19.0
Q ss_pred CCCeEeccCCccccccCCCCcccCCCceEeCCCCccc
Q 002600 738 GLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLS 774 (902)
Q Consensus 738 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 774 (902)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=6.5e-07 Score=78.98 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=98.2
Q ss_pred eEEEccCCcceecCCccccCCCccceecccccEEEeecCccccccCCCcCCCCCCCEEEeeccccccccccccccccccc
Q 002600 593 VYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMA 672 (902)
Q Consensus 593 ~~L~Ls~N~l~g~~p~~~~~l~~L~~l~l~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 672 (902)
..++|+.+++- .+++....+.... .|...+|++|.|....+..-...+.++.|++++|.++ .+|..+..+++|
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~----el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL- 102 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGY----ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL- 102 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCc----eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh-
Confidence 44555555543 2333333332222 2456778888887544444445668899999999998 577778888887
Q ss_pred ccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEEECCCCcccccCCccccccCCCCeEeccCCccccc
Q 002600 673 AANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGK 752 (902)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 752 (902)
+.|+++.|.+. ..|..+..+.+|-.|+..+|.+. +
T Consensus 103 -------------------------------------------r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-e 137 (177)
T KOG4579|consen 103 -------------------------------------------RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-E 137 (177)
T ss_pred -------------------------------------------hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-c
Confidence 88999999998 66788888999999999999988 6
Q ss_pred cCCCCcccCCCceEeCCCCcccccCCccccCCC
Q 002600 753 IPENIGNMRSIESLDFSMNQLSGKVPQSMSSLS 785 (902)
Q Consensus 753 ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 785 (902)
||-.+---+..-..++.++.+.+.-|..++.+.
T Consensus 138 id~dl~~s~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 138 IDVDLFYSSLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred CcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence 666544334455567788888888777665543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=4.7e-06 Score=83.21 Aligned_cols=207 Identities=18% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCCCCCeEeCCCCCCCCCC-CCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCC
Q 002600 111 DLKHLIHLDLSDNDFQGIQ-TPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSF 189 (902)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 189 (902)
..++++.|||.+|.++.-+ +...+.++|+|++|+|+.|++...+-..=..+.+|++|-|.+.++..... -..+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-TSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-hhhhhcchh
Confidence 5677888888888777542 22345678888888888887764432211345678888887776543221 123566777
Q ss_pred CCEEeCCCCcCCCCCCcccccCC-CCCCCEEECCCCCCCCCC--CCCCCCCCCCCeEecCCCcCCCccccccccccCCCC
Q 002600 190 LEHLDLSLVDLTKSSDGLVTINS-LPSLKVLKLSYCELHHFP--SLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRN 266 (902)
Q Consensus 190 L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 266 (902)
+++|.+|.|++............ -+.+++|..-.|...... ...-..++++..+-+..|.+...-..- ....++.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek--~se~~p~ 225 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEK--GSEPFPS 225 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcc--cCCCCCc
Confidence 77777777744332110000000 012222222222110000 000012234444444444332211110 2233444
Q ss_pred ccEEEccCCcCCCC-CCcCCCCCCCCCEEEccCCcCCCCCch------hccCCCCCCeeec
Q 002600 267 LVFFDLSDNEFHGK-IPSGLGNLTFLRHLDLSSNEFNSAIPG------WLSKLNDLEFLSL 320 (902)
Q Consensus 267 L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L 320 (902)
+..|+|+.+++..- --+.+..++.|..|.++++.+...... .++.+++++.|+=
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 55555665555421 123355666666666666666543211 2355666666653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.1e-05 Score=56.40 Aligned_cols=38 Identities=39% Similarity=0.643 Sum_probs=32.8
Q ss_pred CCCceEeCCCCcccccCCccccCCCCCCeEECcCCcccc
Q 002600 761 RSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTG 799 (902)
Q Consensus 761 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 799 (902)
++|++|++++|+|+ .+|..+.++++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 677789999999999999999884
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00028 Score=76.32 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCCCeEeccCCccccccCCCCcccCCCceEeCCCCcc------cccCCccccCCCCCCeEECcCCc
Q 002600 737 MGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQL------SGKVPQSMSSLSFLNHLNLSYNN 796 (902)
Q Consensus 737 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l------~~~ip~~l~~l~~L~~L~Ls~N~ 796 (902)
++|++|++++|... ..|..+. .+|+.|+++.|.. .+.+|+.+ .+.....+.++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence 46777777777655 3454444 5677777776631 22455554 44444444444443
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=4.5e-05 Score=75.76 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=61.9
Q ss_pred ccccccccCCCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCC--cCCCCCCCCCCCCCCCcEEeccCCcccccccc
Q 002600 103 GKINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGA--EFAGVIPHQLGNISNLQYLDLSKSYYELQVES 180 (902)
Q Consensus 103 g~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~ 180 (902)
|.+..-.-.+..|+.|++.+..++.+ ..+-.+++|++|.+|.| ++++.++.....+++|++|++++|++.. ...
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lst 108 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LST 108 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccc
Confidence 33444444556666677777666654 33456788899999988 6666666666667888888888887654 444
Q ss_pred ccccCCCCCCCEEeCCCCcCCC
Q 002600 181 ISWLSGLSFLEHLDLSLVDLTK 202 (902)
Q Consensus 181 ~~~l~~l~~L~~L~Ls~n~l~~ 202 (902)
+..+..+.+|..|++..|..+.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcchhhhhcccCCccc
Confidence 4445555556666666555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00055 Score=74.08 Aligned_cols=71 Identities=14% Similarity=0.280 Sum_probs=34.7
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCC-cCCCCcchhhcCCCCCCeEEc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNN-TLDGAIPMSLGQLSHLELLDL 443 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L 443 (902)
+++.|++++|.++.. |. -.++|++|.+++|.-...+|..+ .++|+.|++++| .+. .+| ++|+.|++
T Consensus 53 ~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~L 119 (426)
T PRK15386 53 ASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLEI 119 (426)
T ss_pred CCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEEe
Confidence 555666665544332 21 12346666666543333444433 235666666666 333 333 23555555
Q ss_pred ccccC
Q 002600 444 SNNRL 448 (902)
Q Consensus 444 s~N~l 448 (902)
+.+..
T Consensus 120 ~~n~~ 124 (426)
T PRK15386 120 KGSAT 124 (426)
T ss_pred CCCCC
Confidence 55443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.31 E-value=4.2e-06 Score=87.61 Aligned_cols=231 Identities=18% Similarity=0.105 Sum_probs=120.6
Q ss_pred CCCCeEeCCCCCCCCC-CCCccccCCCCCCEEeccCCc-CCCCCCCCC-CCCCCCcEEeccCCcccccccccc-ccCCCC
Q 002600 113 KHLIHLDLSDNDFQGI-QTPSYLGSLKNLRYLNLSGAE-FAGVIPHQL-GNISNLQYLDLSKSYYELQVESIS-WLSGLS 188 (902)
Q Consensus 113 ~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~n~~~~~~~~~~-~l~~l~ 188 (902)
..|+.|.+.++.-.+. +.-.+...++++++|++.++. +++..-..+ ..+++|++|++..|.. +...... ....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~-iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS-ITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch-hHHHHHHHHHHhhh
Confidence 4567777777643332 122344567888888887774 222211222 3577788888877531 1111111 245678
Q ss_pred CCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCeEecCCC-cCCCccccccccccCCC
Q 002600 189 FLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS--LPSTNFSSLKALDLSGN-HFNNSLFQYSSWVFGLR 265 (902)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~ 265 (902)
+|++++++.+.-.....+......+..++.+.+.+|.=.+... ..-.....+.++++..+ .+++.. ....-..+.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~--~~~i~~~c~ 294 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED--LWLIACGCH 294 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH--HHHHhhhhh
Confidence 8888888877544333333345566667777666653222111 00122344555665554 333321 111233567
Q ss_pred CccEEEccCCcCCCCCC-cC-CCCCCCCCEEEccCCc-CCCCCchhc-cCCCCCCeeeccccCCCC----CccccCCCCc
Q 002600 266 NLVFFDLSDNEFHGKIP-SG-LGNLTFLRHLDLSSNE-FNSAIPGWL-SKLNDLEFLSLRELGGQI----PTSFVRLCKL 337 (902)
Q Consensus 266 ~L~~L~L~~n~l~~~~p-~~-l~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~~~~~~----~~~l~~l~~L 337 (902)
.|+.|+.+++...+..+ .. -.+..+|+.|.++.++ ++..-...+ .+++.|+.+++.+..... -..-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 88888888876532211 12 2467889999998886 332222223 245666666666532211 1122344555
Q ss_pred cEEEccCcc
Q 002600 338 TSIDVSYVK 346 (902)
Q Consensus 338 ~~L~l~~n~ 346 (902)
+.+.++++.
T Consensus 375 r~lslshce 383 (483)
T KOG4341|consen 375 RVLSLSHCE 383 (483)
T ss_pred ccCChhhhh
Confidence 555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00044 Score=65.88 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=64.4
Q ss_pred CCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCE
Q 002600 113 KHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEH 192 (902)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~ 192 (902)
.....+||++|++..+ ..+..++.|..|.|++|+|+.+-|.--..+++|+.|.|.+|.+.. .+++..
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~p--------- 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDP--------- 108 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcch---------
Confidence 3455677888777654 345667778888888888876655544456677777777775421 122223
Q ss_pred EeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCC---CCCCCCCCCCeEecCCCc
Q 002600 193 LDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS---LPSTNFSSLKALDLSGNH 249 (902)
Q Consensus 193 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~Ls~n~ 249 (902)
+..||+|+.|.+-+|.+..... ..+..+++|+.||++.-.
T Consensus 109 -----------------La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 -----------------LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred -----------------hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 3445555555555555443332 345667777777777643
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.0005 Score=65.50 Aligned_cols=85 Identities=25% Similarity=0.260 Sum_probs=56.1
Q ss_pred CCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEE
Q 002600 388 KSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFS 467 (902)
Q Consensus 388 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~ 467 (902)
.....+||++|.+... ..|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.|.+|.|..-..-..+..|++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4556777777777532 34666777888888888887555544445567888888888776333333566677777777
Q ss_pred ccCceee
Q 002600 468 AFGNSLI 474 (902)
Q Consensus 468 l~~n~l~ 474 (902)
+-+|+..
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7777654
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.23 E-value=8.5e-06 Score=85.40 Aligned_cols=85 Identities=26% Similarity=0.255 Sum_probs=45.4
Q ss_pred CCCCEEeccCCcCCCCCC--CCCCCCCCCcEEeccCCccccccccc-cccCCCCCCCEEeCCCC-cCCCCCCcccccCCC
Q 002600 138 KNLRYLNLSGAEFAGVIP--HQLGNISNLQYLDLSKSYYELQVESI-SWLSGLSFLEHLDLSLV-DLTKSSDGLVTINSL 213 (902)
Q Consensus 138 ~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~l~~l 213 (902)
..|+.|.+.++.-.+.-+ ..-.+++++++|.+.++.. ...... ..-..+++|+++++..+ .++.. ........+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~-iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK-ITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhccee-ccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhh
Confidence 357888888886443322 2345788888888888752 111111 12345667777776663 23321 000112345
Q ss_pred CCCCEEECCCC
Q 002600 214 PSLKVLKLSYC 224 (902)
Q Consensus 214 ~~L~~L~Ls~n 224 (902)
++|++|++++|
T Consensus 216 ~kL~~lNlSwc 226 (483)
T KOG4341|consen 216 RKLKYLNLSWC 226 (483)
T ss_pred hhHHHhhhccC
Confidence 56666666655
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00015 Score=85.32 Aligned_cols=152 Identities=25% Similarity=0.317 Sum_probs=83.8
Q ss_pred CCCCeEeCCCCCCCCCCCCcccc-CCCCCCEEeccCCcCCCC-CCCCCCCCCCCcEEeccCCccccccccccccCCCCCC
Q 002600 113 KHLIHLDLSDNDFQGIQTPSYLG-SLKNLRYLNLSGAEFAGV-IPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFL 190 (902)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 190 (902)
.+|++||+++.......-|..++ .||+|+.|.+++-.+... .-....++++|+.||+|++.++.. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 46666666665433222233332 456677776666544322 122234566677777776654322 345666666
Q ss_pred CEEeCCCCcCCCCCCcccccCCCCCCCEEECCCCCCCCCCC------CCCCCCCCCCeEecCCCcCCCccccccccccCC
Q 002600 191 EHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS------LPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGL 264 (902)
Q Consensus 191 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 264 (902)
+.|.+.+-.+.... ....+.++++|++||+|.......+. +.-..+|+||.||.|+..+....... .+...
T Consensus 198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~--ll~sH 274 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE--LLNSH 274 (699)
T ss_pred HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH--HHHhC
Confidence 66666665555432 22345667777777777765544331 12235789999999988876654331 22234
Q ss_pred CCccEEE
Q 002600 265 RNLVFFD 271 (902)
Q Consensus 265 ~~L~~L~ 271 (902)
++|+.+.
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 4554443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00035 Score=82.28 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=38.1
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCeEecCCCcCCCccccccccccCCCCccEEEccCCcCCCCC------CcCC
Q 002600 212 SLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGKI------PSGL 285 (902)
Q Consensus 212 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------p~~l 285 (902)
++|+|..||+|+.+++.+ ..++++++|++|.+.+=.+... .....+.+|++|+.||+|........ -+.-
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 344444444444444433 2334444444444444333210 00113445555555555554332110 0112
Q ss_pred CCCCCCCEEEccCCcCCC
Q 002600 286 GNLTFLRHLDLSSNEFNS 303 (902)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~ 303 (902)
..+++|+.||.+++.+..
T Consensus 247 ~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCccccEEecCCcchhH
Confidence 236677777777666553
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00032 Score=69.81 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=37.6
Q ss_pred ccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCCEEeCCCCcCCC
Q 002600 134 LGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTK 202 (902)
Q Consensus 134 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 202 (902)
.-.+..|+.|++.+..++.. ..+-.|++|+.|.++.|+.....+.......+++|+++++++|++..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 34456677777666665532 34556777777777777544333333333444555555555555544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0035 Score=57.67 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=47.2
Q ss_pred cccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCcc
Q 002600 383 QLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTK 462 (902)
Q Consensus 383 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~ 462 (902)
.|..+++|+.+.+.+ .+.......|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+. .++...|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455566667666664 344344455666666777776664 4433334556666677777754 332 344446666666
Q ss_pred ccEEEccCceeeEEeCCCCCCcccccccccc
Q 002600 463 LTSFSAFGNSLIFKVNQSWVPPFQLEKLRLR 493 (902)
Q Consensus 463 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 493 (902)
++.+.+..+ +.......+... +++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666666554 443333333333 44444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.34 E-value=0.0079 Score=55.29 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=59.5
Q ss_pred ccccCCCCCCEEEccCCcCCCCcchhhcCCCCCCeEEcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCcc
Q 002600 406 PALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPF 485 (902)
Q Consensus 406 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 485 (902)
..|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +. .++...|.++++++.+.+.+ .+.......|..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 4577788888888875 455444566778888888888775 54 66666788887888888865 44444455555566
Q ss_pred cccccccccccCCCCCChhhcCCCCccEEEccCCcCCCcCChhHHhccCC
Q 002600 486 QLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQ 535 (902)
Q Consensus 486 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 535 (902)
+++.+++..+ +.......+.++ .|+.+.+.. .+. .++...+..+++
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~ 127 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTK 127 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCcccccccc
Confidence 6666666543 333344445554 666666554 222 334444444433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0043 Score=36.94 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=4.6
Q ss_pred CeEeccCCccc
Q 002600 740 QSLNFSHNLFT 750 (902)
Q Consensus 740 ~~L~Ls~N~l~ 750 (902)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.74 E-value=0.0043 Score=36.94 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=15.6
Q ss_pred CCceEeCCCCcccccCCccccC
Q 002600 762 SIESLDFSMNQLSGKVPQSMSS 783 (902)
Q Consensus 762 ~L~~LdLs~N~l~~~ip~~l~~ 783 (902)
+|++|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888888 67776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.00056 Score=68.16 Aligned_cols=81 Identities=23% Similarity=0.211 Sum_probs=35.5
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCCcccccCCCCCCEEEccCCcCCCCc-chhhcCCCCCCeEEc
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAI-PMSLGQLSHLELLDL 443 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L 443 (902)
+.+.|++.+|.+.++- ....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|...- -..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 4455555555554321 122345555555555555432 22444455555555555444210 112334444444444
Q ss_pred ccccCc
Q 002600 444 SNNRLN 449 (902)
Q Consensus 444 s~N~l~ 449 (902)
..|.-.
T Consensus 96 ~ENPCc 101 (388)
T KOG2123|consen 96 DENPCC 101 (388)
T ss_pred ccCCcc
Confidence 444443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.00039 Score=69.25 Aligned_cols=82 Identities=23% Similarity=0.244 Sum_probs=47.7
Q ss_pred CCCCCeEeCCCCCCCCCCCCccccCCCCCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCCccccccccccccCCCCCCC
Q 002600 112 LKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLE 191 (902)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 191 (902)
+.+.+.|++-++.++++ ....+++.|++|.||-|+|+..- .+..|++|++|+|..|.|..+ ..+..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL-DELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH-HHHHHHhcCchhh
Confidence 45666677777777765 23456777777777777776442 366677777777776654321 2223344444444
Q ss_pred EEeCCCCc
Q 002600 192 HLDLSLVD 199 (902)
Q Consensus 192 ~L~Ls~n~ 199 (902)
.|-|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 44444443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.85 E-value=0.004 Score=72.06 Aligned_cols=113 Identities=27% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCCCCEEeCCCCcCCCCCCcccccCCCCCCCEEECCCC-CCCCC-C---CCCCCCCCCCCeEecCCCc-CCCcccccccc
Q 002600 187 LSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYC-ELHHF-P---SLPSTNFSSLKALDLSGNH-FNNSLFQYSSW 260 (902)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~---~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 260 (902)
++.|+.+.+..+.-............++.|+.|+++.+ ..... + ......+++|+.|+++++. +++.... .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~---~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS---A 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH---H
Confidence 45555555554432222123334555666666666652 11111 1 1123344666677776665 4433222 2
Q ss_pred cc-CCCCccEEEccCCc-CCCCC-CcCCCCCCCCCEEEccCCcCC
Q 002600 261 VF-GLRNLVFFDLSDNE-FHGKI-PSGLGNLTFLRHLDLSSNEFN 302 (902)
Q Consensus 261 ~~-~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~ 302 (902)
+. .+++|++|.+.+|. ++... -.....++.|++|+++++...
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22 25677777766665 33221 111234566777777766543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.84 E-value=0.00082 Score=75.75 Aligned_cols=177 Identities=24% Similarity=0.264 Sum_probs=85.3
Q ss_pred cCCCCCCEEECCCCcCCCCCccc----ccCC-CCCCEEEccCCcCCCC----cchhhcCCCCCCeEEcccccCccccchh
Q 002600 385 GQFKSLHTLELRDNSLSGPLPPA----LGEL-SSMKNLDLFNNTLDGA----IPMSLGQLSHLELLDLSNNRLNGTLSEI 455 (902)
Q Consensus 385 ~~l~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~i~~~ 455 (902)
...+.|+.|++++|.+.+..-.. +... ..++.|++..|.+++. +...+.....++.++++.|.+...-
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g--- 188 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG--- 188 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh---
Confidence 34455555666666555321111 1111 3455566666665532 4445555666777777777653100
Q ss_pred hhccCccccEEEccCceeeEEeCCCCCCcccccccccccccCCCC----CChhhcCCCC-ccEEEccCCcCCCcCChhHH
Q 002600 456 HFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQ----FPSWLRSQKH-LFILDISNTRISDTIPRWFW 530 (902)
Q Consensus 456 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~-L~~L~Ls~N~l~~~~p~~~~ 530 (902)
...-.+.++. .+.+..++++|++.+|.++.. ....+...+. +..|++.+|++.+..-....
T Consensus 189 ~~~l~~~l~~--------------~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~ 254 (478)
T KOG4308|consen 189 LLVLSQALES--------------AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLL 254 (478)
T ss_pred hHHHhhhhhh--------------hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHH
Confidence 0000011110 222344566666666665521 1122333333 44455555555433222221
Q ss_pred hccCCCcEEecccccceeeCCCCCCCCCCC-CCCcEEEccCCccccccchhHhhhcccccccceEEEccCCcce
Q 002600 531 NSISQYVYLNLSTNQIYGEIPNCDRPLPLV-PSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFS 603 (902)
Q Consensus 531 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ll~~L~Ls~N~l~ 603 (902)
..+ +.. +.++.++++.|.++......+++.+..+..+ +.+.+++|.+.
T Consensus 255 ~~l------------------------~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l-~~l~l~~n~l~ 303 (478)
T KOG4308|consen 255 PCL------------------------SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQL-EELSLSNNPLT 303 (478)
T ss_pred HHh------------------------cccchhhhhhhhhcCCccccchHHHHHHHhhhHHH-HHhhcccCccc
Confidence 111 111 2456677777777766666666666666655 67777777665
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.56 E-value=0.032 Score=64.48 Aligned_cols=139 Identities=21% Similarity=0.114 Sum_probs=59.3
Q ss_pred CCCCCEEECCCCc-CCCCCcccccC-CCCCCEEEccCCc-CCCC-cchhhcCCCCCCeEEcccccCccc--cchhhhccC
Q 002600 387 FKSLHTLELRDNS-LSGPLPPALGE-LSSMKNLDLFNNT-LDGA-IPMSLGQLSHLELLDLSNNRLNGT--LSEIHFVNL 460 (902)
Q Consensus 387 l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~--i~~~~~~~l 460 (902)
+++|+.|+++.+. +++..-..+.. +++|++|.+.+|. +++. +-.....++.|++|+++++...+. +.. ...++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c 320 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNC 320 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhC
Confidence 3555555555554 33222222222 4555555555554 3322 112223455566666665543211 222 23335
Q ss_pred ccccEEEccCceeeEEeCCCCCCcccccccccccccCC---CCCChhhcCCCCccEEEccCCcCCCcCChhHHhccCCC
Q 002600 461 TKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLG---PQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQY 536 (902)
Q Consensus 461 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~L 536 (902)
++++.+.+....- +..++.+.+..+... .........++.++.+.+..+......-......++.|
T Consensus 321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 5544443322210 233444444443331 12223345566666677766663322213333444444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.55 E-value=0.003 Score=61.43 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=71.1
Q ss_pred eEEEECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccccCCccccCCCCCCeEECcC
Q 002600 715 VRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSY 794 (902)
Q Consensus 715 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~ 794 (902)
.+.||++.|++. ..-..|+-++.|..||+|.|++. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-.
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 388999999987 55667888889999999999998 78999999999999999999988 8899999999999999999
Q ss_pred Cccc
Q 002600 795 NNLT 798 (902)
Q Consensus 795 N~l~ 798 (902)
|+|.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 9864
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.14 E-value=0.0013 Score=74.19 Aligned_cols=198 Identities=25% Similarity=0.249 Sum_probs=103.5
Q ss_pred CCCEEEccCCcCCCCCchhccCCCCCCeeeccccCCCCCccccCCCCccEEEccCcccCCcchHHHHhhcccccccccEE
Q 002600 290 FLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESL 369 (902)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 369 (902)
.+.+|.|.+|.+...... .+-..+...+.|+.|++++|.+.+.....+...-....+.+++|
T Consensus 88 ~l~~L~L~~~~l~~~~~~------------------~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L 149 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAE------------------ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTL 149 (478)
T ss_pred hHHHhhhhhCccccchHH------------------HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHH
Confidence 367777777777643221 22234455666777777777776544443333222222356667
Q ss_pred EccCcccCCc----ccccccCCCCCCEEECCCCcCCC----CCccccc----CCCCCCEEEccCCcCCCC----cchhhc
Q 002600 370 VLSGCHICGH----LTNQLGQFKSLHTLELRDNSLSG----PLPPALG----ELSSMKNLDLFNNTLDGA----IPMSLG 433 (902)
Q Consensus 370 ~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~Ls~n~l~~~----~p~~l~ 433 (902)
++..|.++.. +...+.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. +...+.
T Consensus 150 ~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 150 ELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred HhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 7777766544 33344456677777777776631 1122222 345666666666665521 111222
Q ss_pred CCCC-CCeEEcccccCccccchhhhccCccccEEEccCceeeEEeCCCCCCc-ccccccccccccCCCC----CChhhcC
Q 002600 434 QLSH-LELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPP-FQLEKLRLRSCHLGPQ----FPSWLRS 507 (902)
Q Consensus 434 ~l~~-L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~----~~~~l~~ 507 (902)
..++ +..|++..|.+.+..-..... .+..+ ..+++++++.|.++.. .+..+..
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~---------------------~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~ 288 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLP---------------------CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS 288 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHH---------------------HhcccchhhhhhhhhcCCccccchHHHHHHHhh
Confidence 3333 445666666554221110111 11111 4566777777776654 3344556
Q ss_pred CCCccEEEccCCcCCCcCC
Q 002600 508 QKHLFILDISNTRISDTIP 526 (902)
Q Consensus 508 ~~~L~~L~Ls~N~l~~~~p 526 (902)
++.++.+.+++|.+.+...
T Consensus 289 ~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 289 CRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hHHHHHhhcccCccccHHH
Confidence 6777888888887765433
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.51 E-value=0.1 Score=28.73 Aligned_cols=11 Identities=45% Similarity=0.748 Sum_probs=3.4
Q ss_pred CceEeCCCCcc
Q 002600 763 IESLDFSMNQL 773 (902)
Q Consensus 763 L~~LdLs~N~l 773 (902)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.41 E-value=0.12 Score=28.46 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=6.8
Q ss_pred CCCeEeccCCccc
Q 002600 738 GLQSLNFSHNLFT 750 (902)
Q Consensus 738 ~L~~L~Ls~N~l~ 750 (902)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5667777777665
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.38 E-value=0.014 Score=57.05 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCcCCCCCCCEEEeecccccccccccccccccccccCCCCCccccccccCCccccceeeEEEeccceeehhhhccceEEE
Q 002600 639 IQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIM 718 (902)
Q Consensus 639 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 718 (902)
..+......+.||++.|++-. ...-|+-++.+ ..|
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~--------------------------------------------~rl 70 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRL--------------------------------------------VRL 70 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHH--------------------------------------------HHH
Confidence 456667788899999988752 22233333333 778
Q ss_pred ECCCCcccccCCccccccCCCCeEeccCCccccccCCCCcccCCCceEeCCCCcccc
Q 002600 719 DISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSG 775 (902)
Q Consensus 719 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~ 775 (902)
|++.|++. ..|..++.+..++.+++-+|..+ ..|.+++.++.++.+++..|.+..
T Consensus 71 ~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 71 DLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred hccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 99999998 88999999999999999999998 889999999999999999999764
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.51 E-value=0.48 Score=29.36 Aligned_cols=14 Identities=50% Similarity=0.639 Sum_probs=8.2
Q ss_pred CCCceEeCCCCccc
Q 002600 761 RSIESLDFSMNQLS 774 (902)
Q Consensus 761 ~~L~~LdLs~N~l~ 774 (902)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.51 E-value=0.48 Score=29.36 Aligned_cols=14 Identities=50% Similarity=0.639 Sum_probs=8.2
Q ss_pred CCCceEeCCCCccc
Q 002600 761 RSIESLDFSMNQLS 774 (902)
Q Consensus 761 ~~L~~LdLs~N~l~ 774 (902)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.08 E-value=0.21 Score=30.35 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=6.2
Q ss_pred CCCceEeCCCCcccc
Q 002600 761 RSIESLDFSMNQLSG 775 (902)
Q Consensus 761 ~~L~~LdLs~N~l~~ 775 (902)
++|++|||++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555555443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.71 E-value=1.1 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCCCCCC
Q 002600 214 PSLKVLKLSYCELHHFPSLP 233 (902)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~ 233 (902)
++|++|+|++|+++.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555566666555555433
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.71 E-value=1.1 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=10.9
Q ss_pred CCCCEEECCCCCCCCCCCCC
Q 002600 214 PSLKVLKLSYCELHHFPSLP 233 (902)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~ 233 (902)
++|++|+|++|+++.+++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555566666555555433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=0.56 Score=45.37 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=37.7
Q ss_pred cccEEEccCcccCCcccccccCCCCCCEEECCCCcCCCCC-ccccc-CCCCCCEEEccCC-cCCCCcchhhcCCCCCCeE
Q 002600 365 ALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPL-PPALG-ELSSMKNLDLFNN-TLDGAIPMSLGQLSHLELL 441 (902)
Q Consensus 365 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 441 (902)
.++.+|-+++.+..+.-+.+..++.++.|.+.+|.--+.- -+.++ -.++|+.|+++.| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555666665555555555555666666666665432210 00011 1345555555544 2443333344444555555
Q ss_pred Ecc
Q 002600 442 DLS 444 (902)
Q Consensus 442 ~Ls 444 (902)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.37 E-value=2.6 Score=26.22 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=10.4
Q ss_pred cCCCceEeCCCCccc
Q 002600 760 MRSIESLDFSMNQLS 774 (902)
Q Consensus 760 l~~L~~LdLs~N~l~ 774 (902)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.13 E-value=7.5 Score=42.73 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=13.0
Q ss_pred CCCccEEEccCcccCCcchHHH
Q 002600 334 LCKLTSIDVSYVKLGQDLSQVL 355 (902)
Q Consensus 334 l~~L~~L~l~~n~l~~~~~~~~ 355 (902)
-+.+++++++.|.+....|-.+
T Consensus 164 npr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred cchhhhhccCCCcccccCCccc
Confidence 3456667777776665555433
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.86 E-value=2.4 Score=26.22 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=6.2
Q ss_pred CCCeEeccCCccc
Q 002600 738 GLQSLNFSHNLFT 750 (902)
Q Consensus 738 ~L~~L~Ls~N~l~ 750 (902)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444455555544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.65 E-value=1.9 Score=48.13 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=7.0
Q ss_pred CccEEEccCCcCC
Q 002600 266 NLVFFDLSDNEFH 278 (902)
Q Consensus 266 ~L~~L~L~~n~l~ 278 (902)
.|++|-+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3555555555544
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.88 E-value=0.82 Score=44.30 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=18.4
Q ss_pred CCCEEeccCCcCCCCCCCCCCCCCCCcEEeccCC
Q 002600 139 NLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKS 172 (902)
Q Consensus 139 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 172 (902)
.++.+|-++..|...--+.+.+++.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 4566666666655443344455555555555544
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.60 E-value=13 Score=40.91 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=12.3
Q ss_pred CCCCEEEccCCcCCCCCchh
Q 002600 289 TFLRHLDLSSNEFNSAIPGW 308 (902)
Q Consensus 289 ~~L~~L~L~~n~l~~~~~~~ 308 (902)
+.+++++++.|.+....|..
T Consensus 165 pr~r~~dls~npi~dkvpih 184 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIH 184 (553)
T ss_pred chhhhhccCCCcccccCCcc
Confidence 45667777777766554433
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.30 E-value=6.3 Score=24.93 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.3
Q ss_pred CCCceEeCCCCccc
Q 002600 761 RSIESLDFSMNQLS 774 (902)
Q Consensus 761 ~~L~~LdLs~N~l~ 774 (902)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34666666666664
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.46 E-value=14 Score=49.98 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=16.8
Q ss_pred eccCCccccccCCCCcccCCCceEeCCCCccc
Q 002600 743 NFSHNLFTGKIPENIGNMRSIESLDFSMNQLS 774 (902)
Q Consensus 743 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 774 (902)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45555555444444555555555555555543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.06 E-value=14 Score=41.74 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=35.1
Q ss_pred ccceEEEECCCCcccccC--CccccccCCCCeEeccCC--ccccccCCCCcc--cCCCceEeCCCCccccc
Q 002600 712 LNLVRIMDISNNNFSGEV--PKELTNLMGLQSLNFSHN--LFTGKIPENIGN--MRSIESLDFSMNQLSGK 776 (902)
Q Consensus 712 ~~~L~~LdLs~N~l~~~i--p~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~--l~~L~~LdLs~N~l~~~ 776 (902)
.+.+..+.|++|++...- ..--...+.|..|+||+| .+.. -.++.+ ...|++|-+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 344577788888875321 111233467778888888 3331 112222 23467777777777643
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=26.32 E-value=73 Score=29.37 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhhccccchh
Q 002600 860 LGFVLGFWCFMGPLLINRRWRYK 882 (902)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~ 882 (902)
+.+++.++.+++.+++.||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 34444444445555566788764
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.30 E-value=66 Score=19.66 Aligned_cols=11 Identities=55% Similarity=0.954 Sum_probs=5.0
Q ss_pred CCCCEEECCCC
Q 002600 214 PSLKVLKLSYC 224 (902)
Q Consensus 214 ~~L~~L~Ls~n 224 (902)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
Done!