Query 002600
Match_columns 902
No_of_seqs 575 out of 5865
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 16:08:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002600.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1319-1322//hhsearch_pdb/002600hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 732.1 46.6 705 35-831 8-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 572.7 40.3 623 104-800 91-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 473.7 47.5 600 103-808 17-632 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 454.7 49.4 601 116-825 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 440.8 41.9 551 111-832 22-592 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 435.8 40.2 534 104-803 26-565 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 430.2 22.5 514 33-800 24-602 (636)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 418.4 34.5 540 69-778 14-564 (844)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 416.7 30.9 536 32-798 262-864 (876)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 415.5 38.3 532 117-822 16-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=732.09 Aligned_cols=705 Identities=30% Similarity=0.439 Sum_probs=457.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 8998989999984420889999989999999999443332426999968999869999999987643430---1355437
Q 002600 35 GCVDSERQALLKLKQDLSDPSNRLASWNIGDGDCCAWDGVVCNNFTGHVLQLNLGNPNPNYGTGSKLVGK---INPSLFD 111 (902)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~g~v~~L~L~~~~~~~~~~~~~~g~---l~~~l~~ 111 (902)
.+.++|++||++||+++.||. .+++|+. ++|||.|+||+|+ .|||+.|++++. .+.|. +++++.+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCCC-CCCCCCCCCEEEC--CCCEEEEECCCC--------CCCCCCCCCCHHHHC
T ss_conf 687899999999996678962-1468789-9987688413878--992789877899--------867755766965731
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778986869899999998883356899898773458847898987--788999875896557853323355332489999
Q 002600 112 LKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPH--QLGNISNLQYLDLSKSYYELQVESISWLSGLSF 189 (902)
Q Consensus 112 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 189 (902)
+++|+.++++.+.+.. .|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+... .....+.++++
T Consensus 76 L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~ 152 (768)
T 3rgz_A 76 LTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNS 152 (768)
T ss_dssp CTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTT
T ss_pred CCCCCCCCCCCCCCCC--CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC-CCHHHHCCCCC
T ss_conf 6802246786888678--70332457889989898985787078967872788999898968826774-79778563889
Q ss_pred CCEEECCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99786788757788872-10148999997997889889999998987888889576689869996633443236887766
Q 002600 190 LEHLDLSLVDLTKSSDG-LVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLV 268 (902)
Q Consensus 190 L~~L~Ls~~~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 268 (902)
|++|++++|.+++.... ...+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. ++.+++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~----l~~l~~L~ 226 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----LGDCSALQ 226 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB----CTTCCSCC
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC----CCCCCCCC
T ss_conf 9989897983588587155664358988989897880346578--45478689898928827887711----12699999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 99844885887798678898988799856996899892000599989811036668889713237877659983585468
Q 002600 269 FFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLG 348 (902)
Q Consensus 269 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 348 (902)
+|++++|.+.+.+|..+..+++|++|++++|.+.+..|.. .++
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~----------------------------------- 269 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK----------------------------------- 269 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT-----------------------------------
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCC-----------------------------------
T ss_conf 8979488587816577744888898989888665716724--368-----------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 860577874202454663389802851477643001389-9988998778868898952336999999998438857988
Q 002600 349 QDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQF-KSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGA 427 (902)
Q Consensus 349 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 427 (902)
+|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 270 ----------------~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 270 ----------------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp ----------------TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred ----------------CCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf ----------------7898979178557725888884468688998968967784236775587766778978852573
Q ss_pred CCHH-HCCCCCCCEEECCCCCCCCCCCHHHHCCCC-CCCEEECCCCEEEEEECCCCCC--CCCCCCCCCCCCCCCCCCCH
Q ss_conf 5111-049997876974266474201534340676-4468973696205880899877--43334211233337998881
Q 002600 428 IPMS-LGQLSHLELLDLSNNRLNGTLSEIHFVNLT-KLTSFSAFGNSLIFKVNQSWVP--PFQLEKLRLRSCHLGPQFPS 503 (902)
Q Consensus 428 ~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~L~~~~l~~~~~~ 503 (902)
+|.. +..+++|++|++++|.+.+.+|. .+..++ +|+.|++++|.+.+..+..+.. ..+|+.|++++|.+.+..|.
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCH-HHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 7978872488887884847843762309-898632277199862787478767666533247761898977846542487
Q ss_pred HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf 11089986499933885887677367731578859963045231107999999999999858984378354436224765
Q 002600 504 WLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICK 583 (902)
Q Consensus 504 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~ 583 (902)
.+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|++++.+|..++. ++.|+.+++++|.+++.+|..+
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~~l-- 486 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMY---VKTLETLILDFNDLTGEIPSGL-- 486 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCCSCCCGGG--
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCHHHCC---CCCCEEEEECCCCCCCCCCHHH--
T ss_conf 775689879898958846685467774-4998898989788154718978828---7773299901995137588788--
Q ss_pred HCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 10332465508984688320027955217896610012100998005854333687768889977999013636435450
Q 002600 584 RENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPR 663 (902)
Q Consensus 584 ~~~~~~~ll~~L~ls~N~l~g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 663 (902)
..++++ +.+++++|++++.+|..+..+++| +.|++++|++++.+|..+.++++|+.|++++|+++|.+|.
T Consensus 487 --~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 487 --SNCTNL-NWISLSNNRLTGEIPKWIGRLENL-------AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp --GGCTTC-CEEECCSSCCCSCCCGGGGGCTTC-------CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred --HCCCCC-CEEECCCCCCCCCCCHHHHCCCCC-------CEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf --169989-989753995189687688568999-------9898978943374887770889899898988846882795
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCC---------CCEEEEEEECCCEEEHHHHCCCEE
Q ss_conf 0111221212478887553200258------------------8554---------310129985041100210035327
Q 002600 664 CINNFTAMAAANSSDQDNAISYIRG------------------GVSD---------VFEDASVVTKGFMVEYNTILNLVR 716 (902)
Q Consensus 664 ~~~~l~~L~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~~~~~~~~l~~L~ 716 (902)
.+.....+......... ...+... .... ...-......|..+.....++.++
T Consensus 557 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGK-RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGTTTTCBCCSTTCSC-EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred HHHCCCCHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCC
T ss_conf 78604212232013454-21111344432222332221001355632320023211001133100462743340335665
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99787870000388212266899837645785601147887666887667277871631277112388889958776895
Q 002600 717 IMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNN 796 (902)
Q Consensus 717 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 796 (902)
.|||++|+++|.+|..+++++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|++||+++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 79785880155587788414157878486880388789678477789989897880238688677578878978796881
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 6334899984787785656788-8878999999999
Q 002600 797 LTGKIPSSTQLQSMDASSFAGN-NLCGAPLPNCPEK 831 (902)
Q Consensus 797 l~g~ip~~~~~~~~~~~~~~gn-~lc~~~~~~c~~~ 831 (902)
++|.||..+|+.+|...+|.|| .+||.|+..|...
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCC
T ss_conf 556089960102489777569832108877678887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=572.71 Aligned_cols=623 Identities=28% Similarity=0.372 Sum_probs=513.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCC
Q ss_conf 01355437778986869899999998883--35689989877345884789898778-8999875896557853323355
Q 002600 104 KINPSLFDLKHLIHLDLSDNDFQGIQTPS--YLGSLKNLRYLNLSGAEFAGVIPHQL-GNISNLQYLDLSKSYYELQVES 180 (902)
Q Consensus 104 ~l~~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~Ls~n~~~~~~~~ 180 (902)
.++..+..+++|++|++++|.+.+. +|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.+......
T Consensus 91 ~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 169 (768)
T 3rgz_A 91 GSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169 (768)
T ss_dssp ECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 8703324578899898989857870-789678727889998989688267747977856388999898979835885871
Q ss_pred -CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf -3324899999978678875778887210148999997997889889999998987888889576689869996633443
Q 002600 181 -ISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSS 259 (902)
Q Consensus 181 -~~~l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 259 (902)
...+.++++|++|++++|.+.+.. .+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+.
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~--- 241 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR--- 241 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH---
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCC----CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCH---
T ss_conf 5566435898898989788034657----845478689898928827887711-12699999897948858781657---
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCC-CCCCEEECCC--CCCCCCCCCCCCCC
Q ss_conf 23688776699844885887798678898988799856996899892000599-9898110366--68889713237877
Q 002600 260 WVFGLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKL-NDLEFLSLRE--LGGQIPTSFVRLCK 336 (902)
Q Consensus 260 ~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~--~~~~~~~~l~~l~~ 336 (902)
.+..+++|+.|++++|.+.+.+|.. .+++|++|++++|.+++..|..+... ++|+.+++++ ..+.+|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 7744888898989888665716724--36878989791785577258888844686889989689677842367755877
Q ss_pred CCEEECCCCCCCCCCHHH-HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CC
Q ss_conf 659983585468860577-8742024546633898028514776430013899-9889987788688989523369--99
Q 002600 337 LTSIDVSYVKLGQDLSQV-LDIFSSCGAYALESLVLSGCHICGHLTNQLGQFK-SLHTLELRDNSLSGPLPPALGE--LS 412 (902)
Q Consensus 337 L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~--l~ 412 (902)
|+.+++++|.+.+.++.. +..++ +|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+.. ++
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~-----~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMR-----GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCT-----TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred CCEEECCCCCCCCCCCHHHHHCCC-----CCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCC
T ss_conf 667789788525737978872488-----887884847843762309898632277199862787478767666533247
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999843885798851110499978769742664742015343406764468973696205880899877433342112
Q 002600 413 SMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRL 492 (902)
Q Consensus 413 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 492 (902)
+|+.|++++|.+++.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..+..+...++|+.|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEE
T ss_conf 761898977846542487775689879898958846685467-7744998898989788154718978828777329990
Q ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 33337998881110899864999338858876773677315788599630452311079999999999998589843783
Q 002600 493 RSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNA 572 (902)
Q Consensus 493 ~~~~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~ 572 (902)
++|.+.+..|..+..+++|+.|++++|++++.+|.++.. +++|++|++++|++++.+|..++.+ +.|+.+++++|.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDC---RSLIWLDLNTNL 549 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGC---TTCCEEECCSSE
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHCCC---CCCCEEECCCCC
T ss_conf 199513758878816998998975399518968768856-8999989897894337488777088---989989898884
Q ss_pred CCCCCCHHHHHHCCCCC-----CCCEEEECCCCC-------------CEECCCCCCCCCCCCCEECCCCCEEEEECCCCC
Q ss_conf 54436224765103324-----655089846883-------------200279552178966100121009980058543
Q 002600 573 LSGSIFHLICKRENEAD-----NIYVYLKLSKNY-------------FSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLH 634 (902)
Q Consensus 573 l~~~~~~~~~~~~~~~~-----~ll~~L~ls~N~-------------l~g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~ 634 (902)
++|.+|..+........ .. +...+.++. +.+..+..+..+.. +..+++..|.+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~l~~~~~~ 621 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGK-RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST-------RNPCNITSRVYG 621 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSC-EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG-------TCCSCTTSCEEE
T ss_pred CCCCCCHHHHCCCCHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-------CCCCCCCCCEEC
T ss_conf 688279578604212232013454-211113444322223322210013556323200232-------110011331004
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCC
Q ss_conf 33687768889977999013636435450011122121247888755320025885543101299850411002100353
Q 002600 635 GSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNL 714 (902)
Q Consensus 635 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 714 (902)
|.+|..+..+++|+.||+++|+++|.+|..+++++.|
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L------------------------------------------- 658 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL------------------------------------------- 658 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC-------------------------------------------
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-------------------------------------------
T ss_conf 6274334033566579785880155587788414157-------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 27997878700003882122668998376457856011478876668876672778716312771123888899587768
Q 002600 715 VRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSY 794 (902)
Q Consensus 715 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 794 (902)
+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..++++++|+.||+++|+++|.+|.. ..+..+....+.+
T Consensus 659 -~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~g 736 (768)
T 3rgz_A 659 -FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLN 736 (768)
T ss_dssp -CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCS
T ss_pred -CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCC
T ss_conf -87848688038878967847778998989788023868867757887897879688155608996-0102489777569
Q ss_pred CC-CCCC
Q ss_conf 95-6334
Q 002600 795 NN-LTGK 800 (902)
Q Consensus 795 N~-l~g~ 800 (902)
|+ ++|.
T Consensus 737 N~~Lcg~ 743 (768)
T 3rgz_A 737 NPGLCGY 743 (768)
T ss_dssp CTEEEST
T ss_pred CCHHCCC
T ss_conf 8321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=473.74 Aligned_cols=600 Identities=18% Similarity=0.188 Sum_probs=371.2
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 30135543777898686989999999888335689989877345884789898778899987589655785332335533
Q 002600 103 GKINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESIS 182 (902)
Q Consensus 103 g~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 182 (902)
..+|..+. +++++|++++|.+.++ .+..+..+++|++|++++|.+.+..|..|+++++|++|++++|.+...+ ..
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~ 91 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--DK 91 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC--TT
T ss_pred CCCCCCCC--CCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC--HH
T ss_conf 52641248--8876888989977875-9788717876758878899648569778740667688889998567568--54
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 24899999978678875778887210148999997997889889999998987888889576689869996633443236
Q 002600 183 WLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVF 262 (902)
Q Consensus 183 ~l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 262 (902)
.+.++++|++|++++|.++..+ +..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+.+..+... ...
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~ 168 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL-DIF 168 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH-GGG
T ss_pred HHCCCCCCCEEECCCCCCCCCC--HHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH-HCC
T ss_conf 5303888898989899668539--6674156788889898995246672111245567779745884365297886-244
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88776699844885887798678898988799856996899892000599989811036668889713237877659983
Q 002600 263 GLRNLVFFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDV 342 (902)
Q Consensus 263 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l 342 (902)
.+++|+.|++++|.+.+..+..+..+++|+.+++.++.+...... .++..+ ..++|+.+++
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~------------------~~~~~l-~~~~L~~L~L 229 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE------------------KLCLEL-ANTSIRNLSL 229 (680)
T ss_dssp TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH------------------HHHHHH-TTSCCCEEEC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH------------------HHHHHH-HHCCCCEEEC
T ss_conf 666321798889825655815553223445543056646805677------------------787775-3151008874
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 58546886057787420245466338980285147764300138999889987788688989523369999999984388
Q 002600 343 SYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNN 422 (902)
Q Consensus 343 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 422 (902)
++|.+.+..+..+..+. .++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 230 ~~n~l~~~~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTSCCCEECTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCCCCCHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCH
T ss_conf 57743646866751467---677888778788767568021167410568557788567658656267888557736331
Q ss_pred CCCCC-----CCH----HHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEE--EEECCCCCCC--CCCCC
Q ss_conf 57988-----511----10499978769742664742015343406764468973696205--8808998774--33342
Q 002600 423 TLDGA-----IPM----SLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLI--FKVNQSWVPP--FQLEK 489 (902)
Q Consensus 423 ~l~~~-----~p~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~--~~L~~ 489 (902)
...+. +|. .+..+++|++|++++|.+.+..+. .+..+++|+.+++++|.+. ......+... ..|+.
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred HHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHH-HHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCE
T ss_conf 32133333554543865624677788887989826878855-74065687289887980144323532202455686766
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 11233337998881110899864999338858876773677315788599630452311079999999999998589843
Q 002600 490 LRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLS 569 (902)
Q Consensus 490 L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls 569 (902)
|++++|.+.+..+..+..+++|+.|++++|.+++.++...+..+++|++|++++|++++..+..+.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------- 451 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-------------- 451 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT--------------
T ss_pred EECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHH--------------
T ss_conf 889999777677544207788888867787575435755325754612784489975422764550--------------
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCE--ECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7835443622476510332465508984688320--02795521789661001210099800585433368776888997
Q 002600 570 NNALSGSIFHLICKRENEADNIYVYLKLSKNYFS--GDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSL 647 (902)
Q Consensus 570 ~n~l~~~~~~~~~~~~~~~~~ll~~L~ls~N~l~--g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~~~~~~~l~~l~~L 647 (902)
.++++ +.+++++|.+. +.+|..+..+++| +.|++++|++++..+..+.++++|
T Consensus 452 -----------------~~~~L-~~L~l~~n~l~~~~~~p~~~~~l~~L-------~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 452 -----------------LVPSL-QRLMLRRVALKNVDSSPSPFQPLRNL-------TILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp -----------------TCTTC-CEEECTTSCCBCTTCSSCTTTTCTTC-------CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -----------------CCCCC-CCCHHCCCCCCCCCCCCCCCCCCCCC-------CEEECCCCCCCCCCHHHHCCCCCC
T ss_conf -----------------07543-10110146442256677645557878-------999899998776794463455346
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCC
Q ss_conf 79990136364354500111221212478887553200258855431012998504110021003532799787870000
Q 002600 648 QILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSG 727 (902)
Q Consensus 648 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 727 (902)
+.|++++|++++..+..+.... ......++.|+.|+|++|+++.
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~------------------------------------~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGP------------------------------------IYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSC------------------------------------CCTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCCCCCCCHHHCCCCC------------------------------------CHHHCCCCCCCEEECCCCCCCC
T ss_conf 8885889973000000046774------------------------------------1423379988888899997887
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 3882122668998376457856011478876668876672778716312771123-888899587768956334899984
Q 002600 728 EVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMS-SLSFLNHLNLSYNNLTGKIPSSTQ 806 (902)
Q Consensus 728 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~~~~ 806 (902)
..+..|+++++|+.|+|++|++++..+..+.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++....
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred CCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHH
T ss_conf 79777346667522389999777679768378988888989999687059668301146657798318970257766899
Q ss_pred CC
Q ss_conf 78
Q 002600 807 LQ 808 (902)
Q Consensus 807 ~~ 808 (902)
|.
T Consensus 631 ~~ 632 (680)
T 1ziw_A 631 FV 632 (680)
T ss_dssp EE
T ss_pred HH
T ss_conf 99
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=454.70 Aligned_cols=601 Identities=22% Similarity=0.214 Sum_probs=436.1
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 86869899999998883356899898773458847898987788999875896557853323355332489999997867
Q 002600 116 IHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDL 195 (902)
Q Consensus 116 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 195 (902)
+.++.+++.++.+ |..+. +++++|++++|.+.+..+..|.++++|++|++++|.+... ....+.++++|++|++
T Consensus 7 ~~~~cs~~~L~~i--p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 7 EVADCSHLKLTQV--PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNL 80 (680)
T ss_dssp SEEECCSSCCSSC--CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC--CTTHHHHCTTCCEEEC
T ss_pred CEEECCCCCCCCC--CCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC--CHHHHHCCCCCCEEEC
T ss_conf 7448777980526--41248--8876888989977875978871787675887889964856--9778740667688889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 88757788872101489999979978898899999989878888895766898699966334432368877669984488
Q 002600 196 SLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDN 275 (902)
Q Consensus 196 s~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n 275 (902)
++|.++..+. ..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 81 ~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 81 QHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNN 155 (680)
T ss_dssp CSSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSS
T ss_pred CCCCCCCCCH--HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCH---HHCCCCCCCEEECCCC
T ss_conf 9985675685--4530388889898989966853966741567888898989952466721---1124556777974588
Q ss_pred CCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
Q ss_conf 58877986788--9898879985699689989200059998981103666888971323787765998358546886057
Q 002600 276 EFHGKIPSGLG--NLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQ 353 (902)
Q Consensus 276 ~~~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 353 (902)
.+++..+..+. .+++|+.|++++|.+.+. .+..+..+.+|+.+++.++.+......
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEF----------------------SPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCB----------------------CTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCC----------------------CHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 4365297886244666321798889825655----------------------815553223445543056646805677
Q ss_pred HHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 787420245466338980285147764300138999--889987788688989523369999999984388579885111
Q 002600 354 VLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKS--LHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMS 431 (902)
Q Consensus 354 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 431 (902)
.+... ...++|+.|++++|.+.+..+..+..++. |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..
T Consensus 214 ~~~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (680)
T 1ziw_A 214 KLCLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291 (680)
T ss_dssp HHHHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred HHHHH--HHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 78777--5315100887457743646866751467677888778788767568021167410568557788567658656
Q ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 04999787697426647420153434067644689736962058808998774333421123333799888111089986
Q 002600 432 LGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHL 511 (902)
Q Consensus 432 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 511 (902)
+..+++|+.|++++|...+.++. ..+ .......+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~---~~l-------------p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 355 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISL---ASL-------------PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC---------C-------------CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred HCCCCCCCEEECCCHHHHCCCCC---CCC-------------CCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 26788855773633132133333---554-------------54386562467778888798982687885574065687
Q ss_pred CEEECCCCCCCCC-CCHHHHHC--CCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCC
Q ss_conf 4999338858876-77367731--57885996304523110799999999999985898437835443622476510332
Q 002600 512 FILDISNTRISDT-IPRWFWNS--ISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEA 588 (902)
Q Consensus 512 ~~L~Ls~n~l~~~-~p~~~~~~--~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~~~~~~ 588 (902)
+.|++++|.+... ++...+.. .++|+.|++++|++++..|..+.. +++|+.+++++|.+++.++.. .+..+
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~---~~~~l 429 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW---LGHLEVLDLGLNEIGQELTGQ---EWRGL 429 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT---CTTCCEEECCSSCCEEECCSG---GGTTC
T ss_pred CEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHC---CCCCCEEECCCCCCCCCCCCC---CCCCC
T ss_conf 289887980144323532202455686766889999777677544207---788888867787575435755---32575
Q ss_pred CCCCEEEECCCCCCEECCCCCCCCCCCCCEECCCCCEEEEECCCCC--CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 4655089846883200279552178966100121009980058543--33687768889977999013636435450011
Q 002600 589 DNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLH--GSLPIQLCRLNSLQILDVAHNSLSGIIPRCIN 666 (902)
Q Consensus 589 ~~ll~~L~ls~N~l~g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 666 (902)
+++ +.+++++|.+++..+..+..+++| +.|++++|.+. +..|..+.++++|+.|++++|++++..+..+.
T Consensus 430 ~~L-~~L~Ls~n~l~~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 430 ENI-FEIYLSYNKYLQLTRNSFALVPSL-------QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp TTC-CEEECCSCSEEECCTTTTTTCTTC-------CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCC-CEEECCCCCCCEECHHHHHCCCCC-------CCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 461-278448997542276455007543-------101101464422566776455578789998999987767944634
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCCCCC--------CCCCCCCC
Q ss_conf 1221212478887553200258855431012998504110021003532799787870000388--------21226689
Q 002600 667 NFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVP--------KELTNLMG 738 (902)
Q Consensus 667 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~ 738 (902)
+++.| +.|++++|++++..+ ..++++++
T Consensus 502 ~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 502 GLEKL--------------------------------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp TCTTC--------------------------------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred CCCCC--------------------------------------------CEEECCCCCCCCCCHHHCCCCCCHHHCCCCC
T ss_conf 55346--------------------------------------------8885889973000000046774142337998
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 9837645785601147887666887667277871631277112388889958776895633489998--47877856567
Q 002600 739 LQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSST--QLQSMDASSFA 816 (902)
Q Consensus 739 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~ 816 (902)
|+.|+|++|+++...+..|+++++|+.|++++|++++..+..+..+++|+.|++++|++++..|... .+..+....+.
T Consensus 538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECC
T ss_conf 88888999978877977734666752238999977767976837898888898999968705966830114665779831
Q ss_pred CC-CCCCCCC
Q ss_conf 88-8878999
Q 002600 817 GN-NLCGAPL 825 (902)
Q Consensus 817 gn-~lc~~~~ 825 (902)
+| ..|+++.
T Consensus 618 ~N~~~c~c~~ 627 (680)
T 1ziw_A 618 FNPFDCTCES 627 (680)
T ss_dssp TCCCCBCCCC
T ss_pred CCCCCCCCCC
T ss_conf 8970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=440.76 Aligned_cols=551 Identities=23% Similarity=0.237 Sum_probs=298.4
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77789868698999999988833568998987734588478989-87788999875896557853323355332489999
Q 002600 111 DLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVI-PHQLGNISNLQYLDLSKSYYELQVESISWLSGLSF 189 (902)
Q Consensus 111 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 189 (902)
..+++++|++++|.++++ .+..+..+++|++|++++|...+.+ |..|+++++|++|++++|.+.. .....+.++++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--LHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--ECTTSSCSCSS
T ss_pred CCCCCCEEECCCCCCCCC-CHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC--CCHHHCCCCCC
T ss_conf 999868888877867832-966776621370886789977444197785378778888798995853--19767157866
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 997867887577888721014899999799788988999999-898788888957668986999663344323688--77
Q 002600 190 LEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPS-LPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGL--RN 266 (902)
Q Consensus 190 L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l--~~ 266 (902)
|++|++++|.+++.......+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+. .+..+ ++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~---~l~~l~~~~ 175 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH---ELEPLQGKT 175 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG---GGHHHHHCS
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHH---HCCCCCCCC
T ss_conf 58701767889734046764556679998889878642325665576388989898989847766788---753556775
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 669984488588779867889898------87998569968998920005999898110366688897132378776599
Q 002600 267 LVFFDLSDNEFHGKIPSGLGNLTF------LRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSI 340 (902)
Q Consensus 267 L~~L~L~~n~~~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L 340 (902)
|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+....+..+.... ....++.+
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l-------------------~~~~l~~L 236 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI-------------------SKSQAFSL 236 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS-------------------CSCCBSEE
T ss_pred CCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-------------------CCCCCCCE
T ss_conf 03578978866655455332237722357400796578868656778887642-------------------74410011
Q ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 8358546886057787420245466338980285147764300138--99988998778868898952336999999998
Q 002600 341 DVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQ--FKSLHTLELRDNSLSGPLPPALGELSSMKNLD 418 (902)
Q Consensus 341 ~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 418 (902)
.+..+..... +..+.+.......+.. .++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 237 ~l~~~~~~~~--------------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 237 ILAHHIMGAG--------------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp ECCSSCCBCS--------------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred ECCCCCCCCC--------------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 2121223466--------------------44456688985565255547861898979945515863452589999998
Q ss_pred CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43885798851110499978769742664742015343406764468973696205880899877433342112333379
Q 002600 419 LFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLG 498 (902)
Q Consensus 419 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~ 498 (902)
+++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++| .+.
T Consensus 297 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N------------------------~i~ 351 (844)
T 3j0a_A 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKN------------------------HIA 351 (844)
T ss_dssp EESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSC------------------------CCC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH-HHCCCCCCCEEECCCC------------------------CCC
T ss_conf 979818987968836888999898989978851878-8468999998989899------------------------877
Q ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 98881110899864999338858876773677315788599630452311079999999999998589843783544362
Q 002600 499 PQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIF 578 (902)
Q Consensus 499 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~ 578 (902)
...+..+..+++|+.|++++|.+++ ++. +++|+.|++++|+++ .+|.. ...++.+++++|.+++...
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-----~~~L~~L~l~~N~l~-~l~~~------~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTT-IHF-----IPSIPDIFLSGNKLV-TLPKI------NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCC-CSS-----CCSCSEEEEESCCCC-CCCCC------CTTCCEEECCSCCCCSSTT
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCC-CCC-----CCCCCHHCCCCCCCC-CCCCC------CCCCCEEECCCCCCCCCCH
T ss_conf 6286661378889998898997786-168-----898232005899723-14554------5543122145675345755
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEEECCCC
Q ss_conf 2476510332465508984688320027955217896610012100998005854333687-768889977999013636
Q 002600 579 HLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPI-QLCRLNSLQILDVAHNSL 657 (902)
Q Consensus 579 ~~~~~~~~~~~~ll~~L~ls~N~l~g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l 657 (902)
. ..+..+++ |+.|++++|++++..+. .+..+++|+.|++++|.+
T Consensus 419 ~----------------------------~~~~~l~~-------L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 419 L----------------------------YFLLRVPH-------LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463 (844)
T ss_dssp H----------------------------HHHTTCTT-------CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCC
T ss_pred H----------------------------HHHHCCCC-------CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6----------------------------66512776-------666667787125555433356687310024777736
Q ss_pred CCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 4354-----50011122121247888755320025885543101299850411002100353279978787000038821
Q 002600 658 SGII-----PRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKE 732 (902)
Q Consensus 658 ~~~~-----p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 732 (902)
++.. +..+.+++. |+.|+|++|++++..|..
T Consensus 464 ~~~~~~~~~~~~~~~l~~--------------------------------------------L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 464 QLAWETELCWDVFEGLSH--------------------------------------------LQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp SSSCCSCCCSSCSSCBCC--------------------------------------------EECCCCCHHHHTTCCTTS
T ss_pred CCCCCCCCCHHHHCCCCC--------------------------------------------CCEEECCCCCCCCCCHHH
T ss_conf 441013553555447553--------------------------------------------657778898565539557
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22668998376457856011478876668876672778716312771123888899587768956334899984787785
Q 002600 733 LTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSSTQLQSMDA 812 (902)
Q Consensus 733 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~ 812 (902)
|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|..+ .+|+.+++++|++.|.++... |..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~----f~~ 570 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELST----FIN 570 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCS----HHH
T ss_pred CCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCCHH----HHH
T ss_conf 04501221569999978745710110--045588898884788896683---776889931997025366189----999
Q ss_pred CCCCCC-CCCCCCCC-CCCCCC
Q ss_conf 656788-88789999-999999
Q 002600 813 SSFAGN-NLCGAPLP-NCPEKN 832 (902)
Q Consensus 813 ~~~~gn-~lc~~~~~-~c~~~~ 832 (902)
.....+ .++|.+.. .|..+.
T Consensus 571 ~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 571 WLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp HHHHTTTTTCCCGGGCCCSSCS
T ss_pred HHHHCCCCCCCCCCCCCCCCCH
T ss_conf 9973685302660027557806
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=435.77 Aligned_cols=534 Identities=20% Similarity=0.221 Sum_probs=354.8
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 01355437778986869899999998883356899898773458847898987788999875896557853323355332
Q 002600 104 KINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISW 183 (902)
Q Consensus 104 ~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 183 (902)
.+|..+. +.+++|++++|.++++ .|..++.+++|++|++++|.+.+..|..|+++++|++|++++|.+... ....
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~ 100 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM--AETA 100 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--CTTT
T ss_pred CCCCCCC--CCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCC--CHHH
T ss_conf 2867789--8675898158734717-966725676652897889835524851136843367644889856545--8655
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 48999999786788757788872101489999979978898899999989878888895766898699966334432368
Q 002600 184 LSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFG 263 (902)
Q Consensus 184 l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 263 (902)
+.++++|++|++++|.++... +..+..+++|++|++++|.+.+.....+..+++|++|++++|.+.+..+. .+..
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 175 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE---DMSS 175 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH---HHHT
T ss_pred HCCCCCCCEEECCCCCCCCCC--CCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH---HHHH
T ss_conf 234421537652126766578--10122378223898879834114765456876568777656844554965---6332
Q ss_pred CCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87766--9984488588779867889898879985699689989200059998981103666888971323787765998
Q 002600 264 LRNLV--FFDLSDNEFHGKIPSGLGNLTFLRHLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSID 341 (902)
Q Consensus 264 l~~L~--~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~ 341 (902)
+++|+ .|++++|.+.+..+..+. ...|+.|++++|.. .+..+..+.++....+.- ..+..+....
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~---------~~~~~~~~~~ 242 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWL---------GTFEDMDDED 242 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEEC---------CCCTTSCCCC
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCHH---HHHHHHHCCCCCHHHEEC---------HHHCCCCCCC
T ss_conf 2156403896679814754866730-01001355677266---777765133564422002---------0110264122
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 35854688605778742024546633898028514776430013899988998778868898952336999999998438
Q 002600 342 VSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHICGHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFN 421 (902)
Q Consensus 342 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 421 (902)
+ .+..+..+. ..+++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus 243 i--------~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 243 I--------SPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp C--------CGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTT
T ss_pred C--------CHHHHCHHH---CCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCC
T ss_conf 6--------866743032---075059994457658557777445667888956288267-7782141654688897716
Q ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85798851110499978769742664742015343406764468973696205880899877433342112333379988
Q 002600 422 NTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQF 501 (902)
Q Consensus 422 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 501 (902)
|.+.+..|..+..+++|++|++++|.+.+.++...+..+++|+.|++++|.+..... .
T Consensus 311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~ 368 (606)
T 3t6q_A 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC----------------------C 368 (606)
T ss_dssp CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE----------------------S
T ss_pred CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC----------------------C
T ss_conf 876867602330157689888989974443462455066758988788996664567----------------------5
Q ss_pred CHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf 81110899864999338858876773677315788599630452311079999999999998589843783544362247
Q 002600 502 PSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLI 581 (902)
Q Consensus 502 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~ 581 (902)
+..+.. +++|+.|++++|++++..|..+..
T Consensus 369 ~~~~~~-------------------------l~~L~~L~l~~n~l~~~~~~~~~~------------------------- 398 (606)
T 3t6q_A 369 NLQLRN-------------------------LSHLQSLNLSYNEPLSLKTEAFKE------------------------- 398 (606)
T ss_dssp TTTTTT-------------------------CTTCCEEECCSCSCEEECTTTTTT-------------------------
T ss_pred CHHCCC-------------------------CCCCCEEECCCCCCCCCCHHHHCC-------------------------
T ss_conf 221056-------------------------788898989899677578887347-------------------------
Q ss_pred HHHCCCCCCCCEEEECCCCCCEECCCC-CCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 651033246550898468832002795-5217896610012100998005854333687768889977999013636435
Q 002600 582 CKRENEADNIYVYLKLSKNYFSGDIPD-CWMNWPNLLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGI 660 (902)
Q Consensus 582 ~~~~~~~~~ll~~L~ls~N~l~g~~p~-~l~~l~~L~~l~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 660 (902)
++++ +.+++++|.+++..+. .+..+++ |+.|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 399 ------l~~L-~~L~l~~n~l~~~~~~~~~~~l~~-------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 399 ------CPQL-ELLDLAFTRLKVKDAQSPFQNLHL-------LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp ------CTTC-SEEECTTCCEECCTTCCTTTTCTT-------CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred ------CCCC-CEEECCCCCCCCCCCCHHHHCCCC-------CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf ------7457-768788886777565212417655-------88898989855776877873788788898989988854
Q ss_pred C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 4---5001112212124788875532002588554310129985041100210035327997878700003882122668
Q 002600 661 I---PRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLM 737 (902)
Q Consensus 661 ~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 737 (902)
. +..+..++.| +.|++++|++++..|..++.++
T Consensus 465 ~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 465 NIQKTNSLQTLGRL--------------------------------------------EILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp EECSSCGGGGCTTC--------------------------------------------CEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCHHHCCCCCC--------------------------------------------CEEECCCCCCCCCCHHHHCCCC
T ss_conf 34543124048876--------------------------------------------6887999966706864632656
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 998376457856011478876668876672778716312771123888899587768956334899
Q 002600 738 GLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPS 803 (902)
Q Consensus 738 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 803 (902)
+|+.|++++|++++.+|..+.+++.| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 78889898980686896684756651-898768941426876625677878896779986166775
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=430.15 Aligned_cols=514 Identities=19% Similarity=0.236 Sum_probs=257.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCC--------CCCCCCCCCCCCCC---CCEEECCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 7789989899999844208899999--------89999999999443---332426999968999869999999987643
Q 002600 33 NVGCVDSERQALLKLKQDLSDPSNR--------LASWNIGDGDCCAW---DGVVCNNFTGHVLQLNLGNPNPNYGTGSKL 101 (902)
Q Consensus 33 ~~~~~~~~~~~ll~~~~~~~~~~~~--------~~~W~~~~~~~c~w---~gv~c~~~~g~v~~L~L~~~~~~~~~~~~~ 101 (902)
.......|+.||.++++++.++.+. ..+|+. +.+||.| .||+|+. .|||++|+|+++ .+
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~--------~l 93 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEGF--------GA 93 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTTS--------CC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECC-CCCEEEEEECCC--------CC
T ss_conf 556677889999999997589974547767765788777-99800014779848767-897889984276--------65
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCC-----------CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCEEEC
Q ss_conf 430135543777898686989999999-----------88833568998987734588478989877889-998758965
Q 002600 102 VGKINPSLFDLKHLIHLDLSDNDFQGI-----------QTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGN-ISNLQYLDL 169 (902)
Q Consensus 102 ~g~l~~~l~~l~~L~~L~L~~n~l~~~-----------~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L 169 (902)
.|.+|++++++++|++|++++|.+... .+|... +..|+ ++++++.+.+.+|..+.. +..+..+++
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred CCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 77288578568451189876885123774334532356733888--88887-6577755411706667788777764275
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC--CC
Q ss_conf 5785332335533248999999786788757788872101489999979978898899999989878888895766--89
Q 002600 170 SKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDL--SG 247 (902)
Q Consensus 170 s~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L--~~ 247 (902)
.... +.. .....++.+.+ ..
T Consensus 171 ~~~~----------------------------------------------------~~~------~~~~~l~~l~l~~~~ 192 (636)
T 4eco_A 171 QQKS----------------------------------------------------IKK------SSRITLKDTQIGQLS 192 (636)
T ss_dssp TSCC----------------------------------------------------CCC------CCCCCCCTTTTTCCS
T ss_pred CCCC----------------------------------------------------CCC------CCCCCHHHHHHCCCC
T ss_conf 5465----------------------------------------------------410------133442130010136
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEECCCCCCCCCCCHH
Q ss_conf 869996633443236887766998448858877-----------------986788--9898879985699689989200
Q 002600 248 NHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHGK-----------------IPSGLG--NLTFLRHLDLSSNEFNSAIPGW 308 (902)
Q Consensus 248 n~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~ 308 (902)
|.+++ +|. .++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.
T Consensus 193 n~l~~-ip~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~------ 262 (636)
T 4eco_A 193 NNITF-VSK---AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL------ 262 (636)
T ss_dssp CEEEE-ECG---GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC------
T ss_pred CCCCC-CCH---HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCC------
T ss_conf 77750-787---77256478789886882366423221222221001024863220044687888980488577------
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCHHHHHHHC-CCCCCCCCEEECCCCCCCCCCCC--C
Q ss_conf 05999898110366688897132378776599835854-688-6057787420-24546633898028514776430--0
Q 002600 309 LSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVK-LGQ-DLSQVLDIFS-SCGAYALESLVLSGCHICGHLTN--Q 383 (902)
Q Consensus 309 l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~--~ 383 (902)
+.+|..+..+++|+.+++++|. +.+ .+|..+..+. ....++|+.|++++|.+. .+|. .
T Consensus 263 ----------------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 263 ----------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp ----------------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ----------------CCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHH
T ss_conf ----------------62838883499978897847988766533578875430465788888989799377-6676555
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCC-CCEEECCCCCCCCCCCHHHHCCCCC
Q ss_conf 138999889987788688989523369999999984388579885111049997-8769742664742015343406764
Q 002600 384 LGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSH-LELLDLSNNRLNGTLSEIHFVNLTK 462 (902)
Q Consensus 384 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~l~~ 462 (902)
++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|. .+...+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~- 400 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKS- 400 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTC-
T ss_pred HCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCH-HHHHCC-
T ss_conf 4257888989690880705166-6478898898989899403-033756510236868985298275-4466-553334-
Q ss_pred CCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHC-------CCCCCCEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf 46897369620588089987743334211233337998881110-------89986499933885887677367731578
Q 002600 463 LTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLR-------SQKHLFILDISNTRISDTIPRWFWNSISQ 535 (902)
Q Consensus 463 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~ 535 (902)
..+|+.|++++|.+.+..|..+. .+++|+.|++++|.++ .+|..++..+++
T Consensus 401 ---------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~ 458 (636)
T 4eco_A 401 ---------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP 458 (636)
T ss_dssp ---------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred ---------------------CCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCC
T ss_conf ---------------------5766889774885788652442002201125898888977279668-678788715898
Q ss_pred CCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCC
Q ss_conf 85996304523110799999999999985898437835443622476510332465508984688320027955217896
Q 002600 536 YVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPN 615 (902)
Q Consensus 536 L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~~~~~~~~ll~~L~ls~N~l~g~~p~~l~~l~~ 615 (902)
|+.|++++|+++ . +|......
T Consensus 459 L~~L~Ls~N~l~-~--------------------------------------------------------i~~~~~~~-- 479 (636)
T 4eco_A 459 LSSINLMGNMLT-E--------------------------------------------------------IPKNSLKD-- 479 (636)
T ss_dssp CSEEECCSSCCS-B--------------------------------------------------------CCSSSSEE--
T ss_pred CCEEECCCCCCC-C--------------------------------------------------------CCHHHHCC--
T ss_conf 898989799788-7--------------------------------------------------------39788404--
Q ss_pred CCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 610012100998005854333687768889977999013636435450011--122121247888755320025885543
Q 002600 616 LLVLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCIN--NFTAMAAANSSDQDNAISYIRGGVSDV 693 (902)
Q Consensus 616 L~~l~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~ 693 (902)
....+.++++|+.|++++|+++ .+|..+. .++.|
T Consensus 480 ---------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L---------------------- 515 (636)
T 4eco_A 480 ---------------------ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL---------------------- 515 (636)
T ss_dssp ---------------------TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC----------------------
T ss_pred ---------------------CCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCC----------------------
T ss_conf ---------------------4001221477338989699388-16854534458876----------------------
Q ss_pred CEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEC------CCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 101299850411002100353279978787000038821226689983764------57856011478876668876672
Q 002600 694 FEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNF------SHNLFTGKIPENIGNMRSIESLD 767 (902)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~ 767 (902)
+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++++++|+.|+
T Consensus 516 ----------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 516 ----------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp ----------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ----------------------CEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf ----------------------989898998877-682353088878788988866566731212737785699878898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 778716312771123888899587768956334
Q 002600 768 FSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGK 800 (902)
Q Consensus 768 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 800 (902)
+++|++ +.+|..+. ++|+.|++++|++.+.
T Consensus 573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCCC-CCCCHHHH--CCCCEEECCCCCCCCC
T ss_conf 989947-70597683--8678998769987633
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=418.41 Aligned_cols=540 Identities=19% Similarity=0.174 Sum_probs=302.5
Q ss_pred CCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 44333242699996899986999999998764343013554377789868698999999988833568998987734588
Q 002600 69 CAWDGVVCNNFTGHVLQLNLGNPNPNYGTGSKLVGKINPSLFDLKHLIHLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGA 148 (902)
Q Consensus 69 c~w~gv~c~~~~g~v~~L~L~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n 148 (902)
|+|..|.+ ...+++.||++++ .+.+..+..+.++++|++|++++|...+.-.|..+..+++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCCCEEECCCC--------CCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 99777898--9998688888778--------6783296677662137088678997744419778537877888879899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 47898987788999875896557853323355332489999997867887577888721014899999799788988999
Q 002600 149 EFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHH 228 (902)
Q Consensus 149 ~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 228 (902)
.+.+..|..|+++++|++|++++|.+.........+.++++|++|++++|.+++.. ....+.++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCHHHHHCCCCCEEECCCCCCCE
T ss_conf 58531976715786658701767889734046764556679998889878642325-66557638898989898984776
Q ss_pred CCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCCCCCCC---CCCCCEEECC
Q ss_conf 999898788--88895766898699966334432368877------669984488588779867889---8988799856
Q 002600 229 FPSLPSTNF--SSLKALDLSGNHFNNSLFQYSSWVFGLRN------LVFFDLSDNEFHGKIPSGLGN---LTFLRHLDLS 297 (902)
Q Consensus 229 ~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~l~~------L~~L~L~~n~~~~~~p~~l~~---l~~L~~L~L~ 297 (902)
..+..+..+ ++|+.|+++.|.+.+..+. .+..+++ |+.|++++|.+.+..+..+.. ...++.+.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSV---DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCC---CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred ECHHHCCCCCCCCCCEEECCCCCCCCCCCC---CHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECC
T ss_conf 678875355677503578978866655455---33223772235740079657886865677888764274410011212
Q ss_pred CCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 99689989200059998981103666888971323787765998358546886057787420245466338980285147
Q 002600 298 SNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQVLDIFSSCGAYALESLVLSGCHIC 377 (902)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 377 (902)
.+....... .+.+.......+.. ...++++.|++++|.+.
T Consensus 240 ~~~~~~~~~-------------------------------------~~~l~~~~~~~f~~---l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 240 HHIMGAGFG-------------------------------------FHNIKDPDQNTFAG---LARSSVRHLDLSHGFVF 279 (844)
T ss_dssp SSCCBCSSS-------------------------------------CSSSTTGGGTTTTT---TTTSCCCEEECTTCCCC
T ss_pred CCCCCCCCC-------------------------------------CCCCCCCCHHHHHC---CCCCCCCEEECCCCCCC
T ss_conf 122346644-------------------------------------45668898556525---55478618989799455
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 76430013899988998778868898952336999999998438857988511104999787697426647420153434
Q 002600 378 GHLTNQLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSHLELLDLSNNRLNGTLSEIHF 457 (902)
Q Consensus 378 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 457 (902)
+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+ ++...+
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~ 358 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTF 358 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCS
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCHHHH
T ss_conf 1586345258999999897981898796883688899989898997885187884689999989898998776-286661
Q ss_pred CCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 06764468973696205880899877433342112333379988811108998649993388588767736773157885
Q 002600 458 VNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQKHLFILDISNTRISDTIPRWFWNSISQYV 537 (902)
Q Consensus 458 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~ 537 (902)
..+++|+.|++++|.+.... ..++|+.|++++|.+. .+|.. ..+++.+++++|.+++.........+++|+
T Consensus 359 ~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp CSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred CCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCC
T ss_conf 37888999889899778616-----8898232005899723-14554---554312214567534575566651277666
Q ss_pred EEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCC
Q ss_conf 99630452311079999999999998589843783544362247651033246550898468832002795521789661
Q 002600 538 YLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMNWPNLL 617 (902)
Q Consensus 538 ~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~~~~~~~~ll~~L~ls~N~l~g~~p~~l~~l~~L~ 617 (902)
.|++++|++++..+... ...++++ +.|++++|.+++..+
T Consensus 430 ~L~Ls~N~l~~~~~~~~------------------------------~~~~~~L-~~L~Ls~N~l~~~~~---------- 468 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQT------------------------------PSENPSL-EQLFLGENMLQLAWE---------- 468 (844)
T ss_dssp EEEEESCCCCCCCSSSS------------------------------SCSCTTC-CBCEEESCCCSSSCC----------
T ss_pred EEECCCCCCCCCCCCCC------------------------------CCCCCCC-CCCCCCCCCCCCCCC----------
T ss_conf 66677871255554333------------------------------5668731-002477773644101----------
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 00121009980058543336877688899779990136364354500111221212478887553200258855431012
Q 002600 618 VLNLGLSILNLRSNKLHGSLPIQLCRLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGVSDVFEDA 697 (902)
Q Consensus 618 ~l~~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (902)
.+..+..+.++++|+.|++++|++++.+|..+.++++|
T Consensus 469 ----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------- 506 (844)
T 3j0a_A 469 ----------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-------------------------- 506 (844)
T ss_dssp ----------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC--------------------------
T ss_pred ----------------CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHH--------------------------
T ss_conf ----------------35535554475536577788985655395570450122--------------------------
Q ss_pred EEEECCCEEEHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99850411002100353279978787000038821226689983764578560114788766688766727787163127
Q 002600 698 SVVTKGFMVEYNTILNLVRIMDISNNNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKV 777 (902)
Q Consensus 698 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 777 (902)
+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..+ .+|+.|++++|.+....
T Consensus 507 ------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 507 ------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp ------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred ------------------HEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCC
T ss_conf ------------------1569999978745710110--045588898884788896683---77688993199702536
Q ss_pred C
Q ss_conf 7
Q 002600 778 P 778 (902)
Q Consensus 778 p 778 (902)
+
T Consensus 564 ~ 564 (844)
T 3j0a_A 564 E 564 (844)
T ss_dssp S
T ss_pred C
T ss_conf 6
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=416.71 Aligned_cols=536 Identities=19% Similarity=0.213 Sum_probs=256.0
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCC--CCC------------CCEEECCCCCCEEEEECCCCCC
Q ss_conf 9778998989999984420889999989999999----999--443------------3324269999689998699999
Q 002600 32 PNVGCVDSERQALLKLKQDLSDPSNRLASWNIGD----GDC--CAW------------DGVVCNNFTGHVLQLNLGNPNP 93 (902)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~W~~~~----~~~--c~w------------~gv~c~~~~g~v~~L~L~~~~~ 93 (902)
.+..+..+|+.||++||+++.+| +|+.++ .+| |.| .||+|+. .+||+.|+|+++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-- 333 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-- 333 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCC--
T ss_conf 64546317899999999973799-----9886898653367764034666545335768428369-997989987247--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCC-CCCCEEEC---CCC---CCCCCCCCCCCCCCCCC
Q ss_conf 999876434301355437778986869-89999999888335689-98987734---588---47898987788999875
Q 002600 94 NYGTGSKLVGKINPSLFDLKHLIHLDL-SDNDFQGIQTPSYLGSL-KNLRYLNL---SGA---EFAGVIPHQLGNISNLQ 165 (902)
Q Consensus 94 ~~~~~~~~~g~l~~~l~~l~~L~~L~L-~~n~l~~~~~~~~l~~l-~~L~~L~L---s~n---~~~~~~p~~~~~l~~L~ 165 (902)
.+.|.+|++++++++|++|+| +.|.+.+. .+...... ..+....+ ... .+....+. .++..+-
T Consensus 334 ------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~--~~~s~l~ 404 (876)
T 4ecn_A 334 ------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR--LNLSDLL 404 (876)
T ss_dssp ------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG--GGSCHHH
T ss_pred ------CCCCCCCHHHHCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--HHHHHHH
T ss_conf ------899948557741555628430125633566-6422234454411567888777666654203751--1156787
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 89655785332335533248999999786788757788872101489999979978898899999989878888895766
Q 002600 166 YLDLSKSYYELQVESISWLSGLSFLEHLDLSLVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDL 245 (902)
Q Consensus 166 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 245 (902)
.. .+...+... +........++.+.+
T Consensus 405 ------------~~-----------------------------~l~~~~~~~-------------~i~~~~~l~l~~l~l 430 (876)
T 4ecn_A 405 ------------QD-----------------------------AINRNPEMK-------------PIKKDSRISLKDTQI 430 (876)
T ss_dssp ------------HH-----------------------------HHHTCTTSC-------------CCCCCCCCCCCTTTT
T ss_pred ------------HH-----------------------------HHHHCCCCC-------------CCCCCCCCCHHHCEE
T ss_conf ------------87-----------------------------765073324-------------322235442312040
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCCCCCC--CCCCCCEEECCCCCCCCC
Q ss_conf 89--86999663344323688776699844885887-----------------7986788--989887998569968998
Q 002600 246 SG--NHFNNSLFQYSSWVFGLRNLVFFDLSDNEFHG-----------------KIPSGLG--NLTFLRHLDLSSNEFNSA 304 (902)
Q Consensus 246 ~~--n~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~ 304 (902)
.. |.+.+ +|. .++.+++|+.|++++|.+++ .+|..++ .+++|+.|++++|.+.
T Consensus 431 ~~~~N~L~~-IP~---~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-- 504 (876)
T 4ecn_A 431 GNLTNRITF-ISK---AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-- 504 (876)
T ss_dssp TCCSCEEEE-ECG---GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--
T ss_pred CCCCCCCCC-HHH---HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC--
T ss_conf 566676152-118---87569998789796886788746532233222222445874440255999778987189887--
Q ss_pred CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCC-CCC-CCHHHHHHHC--CCCCCCCCEEECCCCCCCCCC
Q ss_conf 920005999898110366688897132378776599835854-688-6057787420--245466338980285147764
Q 002600 305 IPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVK-LGQ-DLSQVLDIFS--SCGAYALESLVLSGCHICGHL 380 (902)
Q Consensus 305 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~ 380 (902)
+.+|..+..+++|+.|++++|. +.+ .+|..+..+. ....++|+.|++++|.+. .+
T Consensus 505 --------------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 505 --------------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp --------------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred --------------------CCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CC
T ss_conf --------------------527387737999899989689876566461778752330155688319982289477-61
Q ss_pred CC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCC-CCEEECCCCCCCCCCCHHHH
Q ss_conf 30--0138999889987788688989523369999999984388579885111049997-87697426647420153434
Q 002600 381 TN--QLGQFKSLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIPMSLGQLSH-LELLDLSNNRLNGTLSEIHF 457 (902)
Q Consensus 381 ~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~ 457 (902)
|. .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|. .+
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~ 638 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IF 638 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS-CC
T ss_pred CCHHHHHCCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCH-HH
T ss_conf 87235515898898989799825-621-2247985007987187125-035877525114989998499787-4764-45
Q ss_pred CCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHH---HC--CCCCCCEEECCCCCCCCCCCHHHHHC
Q ss_conf 06764468973696205880899877433342112333379988811---10--89986499933885887677367731
Q 002600 458 VNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSW---LR--SQKHLFILDISNTRISDTIPRWFWNS 532 (902)
Q Consensus 458 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~---l~--~~~~L~~L~Ls~n~l~~~~p~~~~~~ 532 (902)
...+. .+|+.|++++|.+.+..|.. +. ..++|+.|++++|.++ .+|..++..
T Consensus 639 ~~~~~----------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~ 695 (876)
T 4ecn_A 639 NAKSV----------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT 695 (876)
T ss_dssp CTTCS----------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT
T ss_pred HCCCC----------------------CCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCC
T ss_conf 22556----------------------7778897708847886432000000135797688983199688-659788713
Q ss_pred CCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCC
Q ss_conf 57885996304523110799999999999985898437835443622476510332465508984688320027955217
Q 002600 533 ISQYVYLNLSTNQIYGEIPNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENEADNIYVYLKLSKNYFSGDIPDCWMN 612 (902)
Q Consensus 533 ~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~~~~~~~~ll~~L~ls~N~l~g~~p~~l~~ 612 (902)
+++|+.|++++|+++ .+|........ ....+++++ +
T Consensus 696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------------~~l~nl~~L-~------------------- 731 (876)
T 4ecn_A 696 GSPISTIILSNNLMT-SIPENSLKPKD-----------------------GNYKNTYLL-T------------------- 731 (876)
T ss_dssp TCCCSEEECCSCCCS-CCCTTSSSCTT-----------------------SCCTTGGGC-C-------------------
T ss_pred CCCCCEEECCCCCCC-CCCHHHHCCCC-----------------------CCCCCCCCC-C-------------------
T ss_conf 898899989899688-54967845553-----------------------343214871-5-------------------
Q ss_pred CCCCCEECCCCCEEEEECCCCCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 896610012100998005854333687768--889977999013636435450011122121247888755320025885
Q 002600 613 WPNLLVLNLGLSILNLRSNKLHGSLPIQLC--RLNSLQILDVAHNSLSGIIPRCINNFTAMAAANSSDQDNAISYIRGGV 690 (902)
Q Consensus 613 l~~L~~l~~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 690 (902)
.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+.+++.|
T Consensus 732 ------------~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L------------------- 778 (876)
T 4ecn_A 732 ------------TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL------------------- 778 (876)
T ss_dssp ------------EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-------------------
T ss_pred ------------EEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCC-------------------
T ss_conf ------------8988899786-65277624427986989908997876-10566159998-------------------
Q ss_pred CCCCEEEEEEECCCEEEHHHHCCCEEEEECCC------CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54310129985041100210035327997878------700003882122668998376457856011478876668876
Q 002600 691 SDVFEDASVVTKGFMVEYNTILNLVRIMDISN------NNFSGEVPKELTNLMGLQSLNFSHNLFTGKIPENIGNMRSIE 764 (902)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 764 (902)
+.|+|++ |++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+
T Consensus 779 -------------------------~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~ 830 (876)
T 4ecn_A 779 -------------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY 830 (876)
T ss_dssp -------------------------CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred -------------------------CEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHC--CCCC
T ss_conf -------------------------8998879977665632444868883699878898879978-74087662--8778
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 6727787163127711238888995877689563
Q 002600 765 SLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLT 798 (902)
Q Consensus 765 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 798 (902)
.|||++|++....+..+.....+..+.+++|++.
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred EEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCC
T ss_conf 8999799888117677256542311034688865
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=415.53 Aligned_cols=532 Identities=19% Similarity=0.215 Sum_probs=333.7
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 68698999999988833568998987734588478989877889998758965578533233553324899999978678
Q 002600 117 HLDLSDNDFQGIQTPSYLGSLKNLRYLNLSGAEFAGVIPHQLGNISNLQYLDLSKSYYELQVESISWLSGLSFLEHLDLS 196 (902)
Q Consensus 117 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls 196 (902)
.++.++..++.+ |..+. +++++|++++|.+.+..|..|+++++|++|++++|.+.. .....+.++++|++|+++
T Consensus 16 ~~~c~~~~l~~i--P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLNEI--PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCSSC--CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECT
T ss_pred EEECCCCCCCCC--CCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCE--ECHHHCCCCCCCCEEECC
T ss_conf 377777980628--67789--867589815873471796672567665289788983552--485113684336764488
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 87577888721014899999799788988999999898788888957668986999663344323688776699844885
Q 002600 197 LVDLTKSSDGLVTINSLPSLKVLKLSYCELHHFPSLPSTNFSSLKALDLSGNHFNNSLFQYSSWVFGLRNLVFFDLSDNE 276 (902)
Q Consensus 197 ~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~ 276 (902)
+|.++.. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.... .+..+++|+.|++++|.
T Consensus 90 ~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 90 ANPLIFM--AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp TCCCSEE--CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC---TTCCCTTCCEEECCSSC
T ss_pred CCCCCCC--CHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCC---CCCCCCCCCEEECCCCC
T ss_conf 9856545--865523442153765212676657810122378223898879834114765---45687656877765684
Q ss_pred CCCCCCCCCCCCCCCC--EEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
Q ss_conf 8877986788989887--99856996899892000599989811036668889713237877659983585468860577
Q 002600 277 FHGKIPSGLGNLTFLR--HLDLSSNEFNSAIPGWLSKLNDLEFLSLRELGGQIPTSFVRLCKLTSIDVSYVKLGQDLSQV 354 (902)
Q Consensus 277 ~~~~~p~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 354 (902)
+.+..+..++.+++|+ .|++++|.+.+..+..+ ....|+.++++++. ..+..
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-----------------------~~~~L~~L~l~~~~---~~~~~ 218 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-----------------------DSAVFQSLNFGGTQ---NLLVI 218 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-----------------------TTCEEEEEECTTCS---CHHHH
T ss_pred CCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHH-----------------------HHCCCCCCCCCCCH---HHHHH
T ss_conf 45549656332215640389667981475486673-----------------------00100135567726---67777
Q ss_pred HHHHCCCCCCCCCEEECCCCCC---CCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 8742024546633898028514---776430013899--98899877886889895233699999999843885798851
Q 002600 355 LDIFSSCGAYALESLVLSGCHI---CGHLTNQLGQFK--SLHTLELRDNSLSGPLPPALGELSSMKNLDLFNNTLDGAIP 429 (902)
Q Consensus 355 ~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 429 (902)
+..+.. ..++.+.+....- ....+..+..+. +|+.+++++|.+.+..+..+..+++|+.|++++|.++ .+|
T Consensus 219 ~~~l~~---~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 219 FKGLKN---STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHTTT---CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred HHHCCC---CCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCC
T ss_conf 651335---6442200201102641226866743032075059994457658557777445667888956288267-778
Q ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 11049997876974266474201534340676446897369620588089987743334211233337998881110899
Q 002600 430 MSLGQLSHLELLDLSNNRLNGTLSEIHFVNLTKLTSFSAFGNSLIFKVNQSWVPPFQLEKLRLRSCHLGPQFPSWLRSQK 509 (902)
Q Consensus 430 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 509 (902)
..+..+++|++|++++|.+.+.. +..+..++
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~-------------------------------------------------~~~~~~l~ 325 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLC-------------------------------------------------QISASNFP 325 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGG-------------------------------------------------GGCGGGCT
T ss_pred HHHCCCCCCCEEECCCCCCCCCC-------------------------------------------------HHHHHCCC
T ss_conf 21416546888977168768676-------------------------------------------------02330157
Q ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCEEEC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
Q ss_conf 86499933885887677367731578859963045231107--9999999999998589843783544362247651033
Q 002600 510 HLFILDISNTRISDTIPRWFWNSISQYVYLNLSTNQIYGEI--PNCDRPLPLVPSPGLLDLSNNALSGSIFHLICKRENE 587 (902)
Q Consensus 510 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ls~N~l~~~~--p~~~~~~~~~~~L~~l~ls~n~l~~~~~~~~~~~~~~ 587 (902)
+|+.|++++|.+.+.++...+..+++|++|++++|++++.. +. .+..
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------~~~~ 374 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-------------------------------QLRN 374 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-------------------------------TTTT
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCH-------------------------------HCCC
T ss_conf 689888989974443462455066758988788996664567522-------------------------------1056
Q ss_pred CCCCCEEEECCCCCCEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 2465508984688320027955217896610012100998005854333687-768889977999013636435450011
Q 002600 588 ADNIYVYLKLSKNYFSGDIPDCWMNWPNLLVLNLGLSILNLRSNKLHGSLPI-QLCRLNSLQILDVAHNSLSGIIPRCIN 666 (902)
Q Consensus 588 ~~~ll~~L~ls~N~l~g~~p~~l~~l~~L~~l~~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 666 (902)
++++ +.+++++|.+++..|..+..+++| +.|++++|++.+..+. .+.++++|+.|++++|.+.+..|..+.
T Consensus 375 l~~L-~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 375 LSHL-QSLNLSYNEPLSLKTEAFKECPQL-------ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp CTTC-CEEECCSCSCEEECTTTTTTCTTC-------SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CCCC-CEEECCCCCCCCCCHHHHCCCCCC-------CEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 7888-989898996775788873477457-------76878888677756521241765588898989855776877873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEHHHHCCCEEEEECCCCCCCCC---CCCCCCCCCCCCEEE
Q ss_conf 12212124788875532002588554310129985041100210035327997878700003---882122668998376
Q 002600 667 NFTAMAAANSSDQDNAISYIRGGVSDVFEDASVVTKGFMVEYNTILNLVRIMDISNNNFSGE---VPKELTNLMGLQSLN 743 (902)
Q Consensus 667 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~ 743 (902)
.++.| +.|++++|++++. .+..++.+++|+.|+
T Consensus 447 ~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 447 GLPAL--------------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp TCTTC--------------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CCCCC--------------------------------------------CEEECCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf 78878--------------------------------------------8898989988854345431240488766887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCC
Q ss_conf 4578560114788766688766727787163127711238888995877689563348999-84787785656788-887
Q 002600 744 FSHNLFTGKIPENIGNMRSIESLDFSMNQLSGKVPQSMSSLSFLNHLNLSYNNLTGKIPSS-TQLQSMDASSFAGN-NLC 821 (902)
Q Consensus 744 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn-~lc 821 (902)
+++|++++..|..++++++|+.|++++|++++..|..+..++.| +|++++|++++.+|.. ..+..+....+.+| ..|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 99996670686463265678889898980686896684756651-89876894142687662567787889677998616
Q ss_pred C
Q ss_conf 8
Q 002600 822 G 822 (902)
Q Consensus 822 ~ 822 (902)
.
T Consensus 562 ~ 562 (606)
T 3t6q_A 562 T 562 (606)
T ss_dssp S
T ss_pred C
T ss_conf 6
Done!