BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002602
(902 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 18/347 (5%)
Query: 276 ISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQG-QIFSWGEGSGGKLGHGVEA 334
+ D D P L + S+ CG+ H V ++ G +++SWG G G+LGHG +
Sbjct: 36 LGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS 95
Query: 335 DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR 394
D+ P I AL+G I +ACG+ H AVT+ G++ +WG + G LG +P+
Sbjct: 96 DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR--NQNGQLGLGDTEDSLVPQ 153
Query: 395 KVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKE 454
K+ EG++I + G HTAA+T G L+ +G G +G LG GDR+ VP V +
Sbjct: 154 KIQ-AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVK 514
K M +CG HT ++ S L+T+G GQLGHGD E ++P ++
Sbjct: 213 EKMSMVACGWRHTISVS------------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 260
Query: 515 VSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYI 573
+ +++ G T+ALT+ G+++ G +GQ+G + + P ++ + +
Sbjct: 261 ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 320
Query: 574 EDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEAL 620
+ ++CG H V+ ++ V+ WG+G NGQLG G++ ++ P ++EAL
Sbjct: 321 Q-VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 18/340 (5%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHT 360
I+ G+ H+V + + SWG G G+LGHG D P + AL+G I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 361 CAVTLSG-DLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAIT 419
A + SG ++Y+WG G + G LG + + P + + G++I I CG H A+T
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 420 SAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSG 479
G++ ++G G LG GD + VP++++ + ++ M + G HTAA+ E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 480 SNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQ 539
L+ WG G G LG GD R+VP V + VACG TI+++ +G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 540 VFSMGSADYGQLGSPGSTGKF-PTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKG 598
+++ G + YGQLG P ++E + + +I I+ G H ++S ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGFRHTMALTSDGKLYGWGWN 292
Query: 599 ANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
GQ+G G+N ++ +P V D++V V CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 456 KTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV 515
K ++ S G H+ A+ LS + +WG G +GQLGHGDAE R P +
Sbjct: 5 KVLIISAGASHSVAL------------LSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 52
Query: 516 SDDISFCKVACGHSITIALTATG-QVFSMGSADYGQLGSPGSTGKF---PTRIEGNIKHR 571
D V CG T+A + +G +V+S G D+G+LG S+ F P + I+
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 110
Query: 572 YIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCG 631
I+ IACG H V+ + EV +WG+ NGQLG GD E+ P ++A ++K V G
Sbjct: 111 -IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG 169
Query: 632 SNFTAAI 638
+ TAA+
Sbjct: 170 AEHTAAV 176
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 524 VACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYIEDIACGSYH 582
++ G S ++AL + V S G + GQLG + + PT++ H+ I + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQ-IVSVTCGADH 67
Query: 583 -IAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAICL 640
+A S EVY+WG G G+LGHG++ + TP ++AL ++K + CG + A+ +
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
++CG +H + VT++ +F+WG G+ G+LG G D ++PK+I+AL+
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 18/347 (5%)
Query: 276 ISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQG-QIFSWGEGSGGKLGHGVEA 334
+ D D P L + S+ CG+ H V ++ G +++SWG G G+LGHG +
Sbjct: 48 LGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS 107
Query: 335 DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR 394
D+ P I AL+G I +ACG+ H AVT+ G++ +WG + G LG +P+
Sbjct: 108 DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR--NQNGQLGLGDTEDSLVPQ 165
Query: 395 KVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKE 454
K+ EG++I + G HTAA+T G L+ +G G +G LG GDR+ VP V +
Sbjct: 166 KIQ-AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 224
Query: 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVK 514
K M +CG HT ++ S L+T+G GQLGHGD E ++P ++
Sbjct: 225 EKMSMVACGWRHTISVS------------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 272
Query: 515 VSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYI 573
+ +++ G T+ALT+ G+++ G +GQ+G + + P ++ + +
Sbjct: 273 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 332
Query: 574 EDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEAL 620
+ ++CG H V+ ++ V+ WG+G NGQLG G++ ++ P ++EAL
Sbjct: 333 Q-VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 18/340 (5%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHT 360
I+ G+ H+V + + SWG G G+LGHG D P + AL+G I V CG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 361 CAVTLSG-DLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAIT 419
A + SG ++Y+WG G + G LG + + P + + G++I I CG H A+T
Sbjct: 81 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 137
Query: 420 SAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSG 479
G++ ++G G LG GD + VP++++ + ++ M + G HTAA+ E
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 190
Query: 480 SNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQ 539
L+ WG G G LG GD R+VP V + VACG TI+++ +G
Sbjct: 191 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 540 VFSMGSADYGQLGSPGSTGKF-PTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKG 598
+++ G + YGQLG P ++E + + +I I+ G H ++S ++Y WG
Sbjct: 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 599 ANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
GQ+G G+N ++ +P V D++V V CG T A+
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 456 KTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV 515
K ++ S G H+ A+ LS + +WG G +GQLGHGDAE R P +
Sbjct: 17 KVLIISAGASHSVAL------------LSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 64
Query: 516 SDDISFCKVACGHSITIALTATG-QVFSMGSADYGQLGSPGSTGKF---PTRIEGNIKHR 571
D V CG T+A + +G +V+S G D+G+LG S+ F P + I+
Sbjct: 65 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 122
Query: 572 YIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCG 631
I+ IACG H V+ + EV +WG+ NGQLG GD E+ P ++A ++K V G
Sbjct: 123 -IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG 181
Query: 632 SNFTAAI 638
+ TAA+
Sbjct: 182 AEHTAAV 188
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 524 VACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYIEDIACGSYH 582
++ G S ++AL + V S G + GQLG + + PT++ H+ + + CG+ H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS-VTCGADH 79
Query: 583 -IAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAICL 640
+A S EVY+WG G G+LGHG++ + TP ++AL ++K + CG + A+ +
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
++CG +H + VT++ +F+WG G+ G+LG G D ++PK+I+AL+
Sbjct: 334 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 18/347 (5%)
Query: 276 ISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQG-QIFSWGEGSGGKLGHGVEA 334
+ D D P L + S+ CG+ H V ++ G +++SWG G G+LGHG +
Sbjct: 36 LGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS 95
Query: 335 DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR 394
D+ P I AL+G I +ACG+ H AVT+ G++ +WG + G LG +P+
Sbjct: 96 DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR--NQNGQLGLGDTEDSLVPQ 153
Query: 395 KVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKE 454
K+ EG++I + G HTAA+T G L+ +G G +G LG GDR+ VP V +
Sbjct: 154 KIQ-AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVK 514
K M +CG HT ++ S L+T+G GQLGHGD E ++P ++
Sbjct: 213 EKMSMVACGWRHTISVS------------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 260
Query: 515 VSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYI 573
+ +++ G T+ALT+ G+++ G +GQ+G + + P ++ + +
Sbjct: 261 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 320
Query: 574 EDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEAL 620
+ ++CG H V+ ++ V+ WG+G NGQLG G++ ++ P ++EAL
Sbjct: 321 Q-VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 18/340 (5%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHT 360
I+ G+ H+V + + SWG G G+LGHG D P + AL+G I V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 361 CAVTLSG-DLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAIT 419
A + SG ++Y+WG G + G LG + + P + + G++I I CG H A+T
Sbjct: 69 VAYSQSGMEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 125
Query: 420 SAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSG 479
G++ ++G G LG GD + VP++++ + ++ M + G HTAA+ E
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE------- 178
Query: 480 SNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQ 539
L+ WG G G LG GD R+VP V + VACG TI+++ +G
Sbjct: 179 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 540 VFSMGSADYGQLGSPGSTGKF-PTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKG 598
+++ G + YGQLG P ++E + + +I I+ G H ++S ++Y WG
Sbjct: 234 LYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWN 292
Query: 599 ANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
GQ+G G+N ++ +P V D++V V CG T A+
Sbjct: 293 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 456 KTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV 515
K ++ S G H+ A+ LS + +WG G +GQLGHGDAE R P +
Sbjct: 5 KVLIISAGASHSVAL------------LSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 52
Query: 516 SDDISFCKVACGHSITIALTATG-QVFSMGSADYGQLGSPGSTGKF---PTRIEGNIKHR 571
D V CG T+A + +G +V+S G D+G+LG S+ F P + I+
Sbjct: 53 LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 110
Query: 572 YIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCG 631
I+ IACG H V+ + EV +WG+ NGQLG GD E+ P ++A ++K V G
Sbjct: 111 -IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG 169
Query: 632 SNFTAAI 638
+ TAA+
Sbjct: 170 AEHTAAV 176
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 524 VACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYIEDIACGSYH 582
++ G S ++AL + V S G + GQLG + + PT++ H+ + + CG+ H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVS-VTCGADH 67
Query: 583 -IAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAICL 640
+A S EVY+WG G G+LGHG++ + TP ++AL ++K + CG + A+ +
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
++CG +H + VT++ +F+WG G+ G+LG G D ++PK+I+AL+
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 180/347 (51%), Gaps = 18/347 (5%)
Query: 276 ISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQG-QIFSWGEGSGGKLGHGVEA 334
+ D D P L + S+ CG+ H V ++ G +++SWG G G+LGHG +
Sbjct: 38 LGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSS 97
Query: 335 DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR 394
D+ P I AL+G I +ACG+ H AVT G++ +WG + G LG +P+
Sbjct: 98 DLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGR--NQNGQLGLGDTEDSLVPQ 155
Query: 395 KVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKE 454
K+ EG++I + G HTAA+T G L+ +G G +G LG GDR+ VP V +
Sbjct: 156 KIQ-AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 214
Query: 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVK 514
K +CG HT ++ S L+T+G GQLGHGD E ++P ++
Sbjct: 215 EKXSXVACGWRHTISVS------------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 262
Query: 515 VSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYI 573
+ +++ G T ALT+ G+++ G +GQ+G + + P ++ + +
Sbjct: 263 ALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVV 322
Query: 574 EDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEAL 620
+ ++CG H V+ ++ V+ WG+G NGQLG G++ ++ P ++EAL
Sbjct: 323 Q-VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 162 bits (410), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 172/340 (50%), Gaps = 18/340 (5%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHT 360
I+ G+ H+V + + SWG G G+LGHG D P + AL+G I V CG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 361 CAVTLSG-DLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAIT 419
A + SG ++Y+WG G + G LG + + P + + G++I I CG H A+T
Sbjct: 71 VAYSQSGXEVYSWGWG--DFGRLGHGNSSDLFTPLPIK-ALHGIRIKQIACGDSHCLAVT 127
Query: 420 SAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSG 479
G++ ++G G LG GD + VP++++ + ++ + G HTAA+ E
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTE------- 180
Query: 480 SNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQ 539
L+ WG G G LG GD R+VP V + VACG TI+++ +G
Sbjct: 181 -----DGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 540 VFSMGSADYGQLGSPGSTGKF-PTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKG 598
+++ G + YGQLG P ++E + + +I I+ G+ H ++S ++Y WG
Sbjct: 236 LYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGARHTXALTSDGKLYGWGWN 294
Query: 599 ANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
GQ+G G+N ++ +P V D++V V CG T A+
Sbjct: 295 KFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 456 KTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV 515
K ++ S G H+ A+ LS + +WG G +GQLGHGDAE R P +
Sbjct: 7 KVLIISAGASHSVAL------------LSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSA 54
Query: 516 SDDISFCKVACGHSITIALTATG-QVFSMGSADYGQLGSPGSTGKF---PTRIEGNIKHR 571
D V CG T+A + +G +V+S G D+G+LG S+ F P + I+
Sbjct: 55 LDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIR-- 112
Query: 572 YIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCG 631
I+ IACG H V+ + EV +WG+ NGQLG GD E+ P ++A ++K V G
Sbjct: 113 -IKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAG 171
Query: 632 SNFTAAI 638
+ TAA+
Sbjct: 172 AEHTAAV 178
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 301 IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
++CG +H + VT++ +F+WG G+ G+LG G D ++PK+I+AL+
Sbjct: 324 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 179/356 (50%), Gaps = 19/356 (5%)
Query: 286 LPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDAL 345
+P E+ L + G + VT G++++ G G+GG+LG G VS P L++++
Sbjct: 43 VPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESI 102
Query: 346 NGSNIHMVAC--GEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGL 403
I VA G H A++ G++Y+WG+ G LG + PR + + G+
Sbjct: 103 QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIE-SLRGI 159
Query: 404 QISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCG 463
++ + G H+A +T+AG L+T+G G +G LGH D P+ VE L+ + V +CG
Sbjct: 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219
Query: 464 VWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCK 523
+ T +++WGDG G+LG G ++ VP+ + + K
Sbjct: 220 SGDAQTLCLTDDDT----------VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVK 269
Query: 524 VACGHSITIALTATGQVFSMGSADYGQLGSPGSTG--KFPTRIEGNIKHRYIEDIACGSY 581
V CG ++ALT +G V++ G DY +LG GS + P +++G ++ + + IA GS
Sbjct: 270 VECGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQG-LQGKKVIAIATGSL 327
Query: 582 HIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAA 637
H + EVYTWG GQLG G Q P LV AL+ K+V V CGS T A
Sbjct: 328 HCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 19/306 (6%)
Query: 287 PKVLEST--VVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDA 344
P +LES V + ++ G KH + ++ +G+++SWGE GKLGHG + P++I++
Sbjct: 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES 155
Query: 345 LNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQ 404
L G + VA G H+ VT +GDLYTWG G G LG P+ V ++G +
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKG--RYGRLGHSDSEDQLKPKLVE-ALQGHR 212
Query: 405 ISSICCGPW--HTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASC 462
+ I CG T +T ++++GDG +G LG G VP ++++L L V C
Sbjct: 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 463 GVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFC 522
G + A+ + S ++TWG G +LGHG + P V+
Sbjct: 273 GSQFSVALTK------------SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320
Query: 523 KVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYH 582
+A G + T G+V++ G D GQLG + R+ ++ + + +ACGS H
Sbjct: 321 AIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAH 380
Query: 583 IAVVSS 588
S+
Sbjct: 381 TLAWST 386
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 5/196 (2%)
Query: 276 ISSADRRDALLPKVLESTVVLDAQSIACGSKHA--VLVTKQGQIFSWGEGSGGKLGHGVE 333
+ +D D L PK++E+ IACGS A + +T ++SWG+G GKLG G
Sbjct: 191 LGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250
Query: 334 ADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIP 393
P ID+L G + V CG + A+T SG +YTWG G ++ LG S+ P
Sbjct: 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH--RLGHGSDDHVRRP 308
Query: 394 RKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLK 453
R+V G ++G ++ +I G H T G+++T+GD G LG G ++ PR V L+
Sbjct: 309 RQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367
Query: 454 ELKTVMASCGVWHTAA 469
K +CG HT A
Sbjct: 368 GKKVNRVACGSAHTLA 383
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 23/279 (8%)
Query: 366 SGDLYTWGDGIHN-LGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKL 424
SG +Y WG HN G LG + +P + L+ + G A+T+ GKL
Sbjct: 19 SGTIYGWG---HNHRGQLGGIEGAKVKVPTPCE-ALATLRPVQLIGGEQTLFAVTADGKL 74
Query: 425 FTFGDGTFGALGHGDRSSTSVPREVETLKE--LKTVMASCGVWHTAAIVEVAGKTSGSNG 482
+ G G G LG G S S P +E+++ +K V + G H A+
Sbjct: 75 YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS----------- 123
Query: 483 LSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFS 542
S ++++WG+ +G+LGHG+ P P ++ I VA G + + +TA G +++
Sbjct: 124 -SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYT 182
Query: 543 MGSADYGQLGSPGSTGKF-PTRIEGNIKHRYIEDIACGS--YHIAVVSSKSEVYTWGKGA 599
G YG+LG S + P +E HR + DIACGS ++ V++WG G
Sbjct: 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV-DIACGSGDAQTLCLTDDDTVWSWGDGD 241
Query: 600 NGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
G+LG G ++ + P +++L V V CGS F+ A+
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 14/222 (6%)
Query: 421 AGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGS 480
+G ++ +G G LG + + VP E L L+ V G A+
Sbjct: 19 SGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVT--------- 69
Query: 481 NGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVAC--GHSITIALTATG 538
+ KL+ G GA G+LG G E P ++ + KVA G +AL++ G
Sbjct: 70 ---ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 539 QVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKG 598
+V+S G A+ G+LG + R+ +++ + D+A G H A V++ ++YTWGKG
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 599 ANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAICL 640
G+LGH D+E++ P LVEAL+ +V + CGS +CL
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL 228
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 300 SIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFH 359
+IA GS H V T+ G++++WG+ G+LG G + P+L+ AL G ++ VACG H
Sbjct: 321 AIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAH 380
Query: 360 TCAVTLS 366
T A + S
Sbjct: 381 TLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 50/353 (14%)
Query: 312 TKQGQIFSWGEGSGGKLGHGVEA-DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLY 370
T+ G + + G+G G+LG G + P L+ ++ G HT ++ SG +Y
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVY 81
Query: 371 TWGDGIHNLGLLGQVSEI--SHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFG 428
++ G ++ G LG+ + + S +P KV Q + +Q+S+ G HTAA+T G++F +
Sbjct: 82 SF--GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA---GDSHTAALTDDGRVFLW- 135
Query: 429 DGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGL----S 484
G+F R + V + L+ +K M V +V+VA SG++ L +
Sbjct: 136 -GSF-------RDNNGV---IGLLEPMKKSMVPVQVQLDVPVVKVA---SGNDHLVMLTA 181
Query: 485 SKKLFTWGDGAEGQL-----------GHGDAEPRVVPLCVKVSD-----DISFCKVACGH 528
L+T G G +GQL G E +VP CV + + F CG
Sbjct: 182 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241
Query: 529 SITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKH--RYIEDIACGSYHIAVV 586
T A++ G V+ G ++Y QLG+PG+ F + + K+ + + G +H +
Sbjct: 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 301
Query: 587 SSKSEVYTWGKGANGQLGHGDN-ENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
S+ + Y+ G+ G+LG G+ E K PTL+ L V SV CG++ A+
Sbjct: 302 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAV 352
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 50/388 (12%)
Query: 280 DRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGH--GVEADVS 337
+R+ L + E V +A G H V ++K GQ++S+G G LG VE
Sbjct: 48 ERKKPALVSIPEDVVQAEA-----GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEM 102
Query: 338 YPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISH-WIPRKV 396
P ++ + V+ G+ HT A+T G ++ WG N G++G + + +P +V
Sbjct: 103 VPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV 160
Query: 397 SGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDR--SSTSVPREVETLKE 454
Q++ + + + G H +T+ G L+T G G G LG ++ + +E L
Sbjct: 161 --QLD-VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV 217
Query: 455 LKTVM--------------ASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLG 500
K VM A CG + T AI ++ +G QLG
Sbjct: 218 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH------------EGHVYGFGLSNYHQLG 265
Query: 501 HGDAEPRVVP--LCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLG-SPGST 557
E +P L + S+ + G T+ + + G+ +S+G A+YG+LG G+
Sbjct: 266 TPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE 325
Query: 558 GK-FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPT- 615
K PT I + + +ACG+ V+ V+ WG G N QLG G +E+ +P
Sbjct: 326 EKSIPTLIS---RLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVE 382
Query: 616 -LVEALRDKQVKSVVCGSNFTAAICLHK 642
+ + L ++ V SV G T + K
Sbjct: 383 MMGKQLENRVVLSVSSGGQHTVLLVKDK 410
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 50/353 (14%)
Query: 312 TKQGQIFSWGEGSGGKLGHGVEA-DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLY 370
T+ G + + G+G G+LG G + P L+ ++ G HT ++ SG +Y
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVY 70
Query: 371 TWGDGIHNLGLLGQVSEI--SHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFG 428
++ G ++ G LG+ + + S +P KV Q + +Q+S+ G HTAA+T G++F +
Sbjct: 71 SF--GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA---GDSHTAALTDDGRVFLW- 124
Query: 429 DGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGL----S 484
G+F R + V + L+ +K M V +V+VA SG++ L +
Sbjct: 125 -GSF-------RDNNGV---IGLLEPMKKSMVPVQVQLDVPVVKVA---SGNDHLVMLTA 170
Query: 485 SKKLFTWGDGAEGQL-----------GHGDAEPRVVPLCVKVSD-----DISFCKVACGH 528
L+T G G +GQL G E +VP CV + + F CG
Sbjct: 171 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 230
Query: 529 SITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKH--RYIEDIACGSYHIAVV 586
T A++ G V+ G ++Y QLG+PG+ F + + K+ + + G +H +
Sbjct: 231 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 290
Query: 587 SSKSEVYTWGKGANGQLGHGDN-ENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638
S+ + Y+ G+ G+LG G+ E K PTL+ L V SV CG++ A+
Sbjct: 291 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAV 341
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 167/388 (43%), Gaps = 50/388 (12%)
Query: 280 DRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGH--GVEADVS 337
+R+ L + E V +A G H V ++K GQ++S+G G LG VE
Sbjct: 37 ERKKPALVSIPEDVVQAEA-----GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEM 91
Query: 338 YPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISH-WIPRKV 396
P ++ + V+ G+ HT A+T G ++ WG N G++G + + +P +V
Sbjct: 92 VPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV 149
Query: 397 SGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDR--SSTSVPREVETLKE 454
Q++ + + + G H +T+ G L+T G G G LG ++ + +E L
Sbjct: 150 --QLD-VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV 206
Query: 455 LKTVM--------------ASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLG 500
K VM A CG + T AI ++ +G QLG
Sbjct: 207 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH------------EGHVYGFGLSNYHQLG 254
Query: 501 HGDAEPRVVP--LCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLG-SPGST 557
E +P L + S+ + G T+ + + G+ +S+G A+YG+LG G+
Sbjct: 255 TPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAE 314
Query: 558 GK-FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPT- 615
K PT I + + +ACG+ V+ V+ WG G N QLG G +E+ +P
Sbjct: 315 EKSIPTLIS---RLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVE 371
Query: 616 -LVEALRDKQVKSVVCGSNFTAAICLHK 642
+ + L ++ V SV G T + K
Sbjct: 372 MMGKQLENRVVLSVSSGGQHTVLLVKDK 399
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 146/340 (42%), Gaps = 38/340 (11%)
Query: 295 VLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEAD--VSYPKLIDALNGSNIHM 352
+ DA I+ G H +++TK G I+S+G G LG D S P LID L G +
Sbjct: 74 IPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKAL-C 131
Query: 353 VACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGP 412
++ G+ H+ + G ++ WG + G +G + + P + MEG SI G
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL---MEGTVCCSIASGA 188
Query: 413 WHTAAITSAGKLFTFGDGTFGALGH-GDRSSTSVPR--EVETLKELKTVMASC----GVW 465
H +T+AGK+FT G G LG +RS + R + + L+ + ++ +W
Sbjct: 189 DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248
Query: 466 HTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEG--QLGH--GDAEPRVVPLCVKVSDDISF 521
T + S+ W G QL H E + P+ ++ D
Sbjct: 249 ATNYCTFMR---------ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD---I 296
Query: 522 CKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEG-NIKHRYIEDI---A 577
+A G T+ LT + +G +YG+LG G +E I + E I
Sbjct: 297 RHIAGGQHHTVILTTDLKCSVVGRPEYGRLG----LGDVKDVVEKPTIVKKLTEKIVSVG 352
Query: 578 CGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
CG V+ ++Y+WG G N QLG GD +++ P +V
Sbjct: 353 CGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 293 TVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHG-VEADVSYPKLIDALNGSNIH 351
T + D + IA G H V++T + G G+LG G V+ V P ++ L I
Sbjct: 291 TELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIV 349
Query: 352 MVACGEFHTCAVTLSGDLYTWGDGIHN 378
V CGE + AVT+ G LY+WG G++N
Sbjct: 350 SVGCGEVCSYAVTIDGKLYSWGSGVNN 376
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 312 TKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNG-SNIHMVACGEFHTCAVTLSGDLY 370
T G + G G G+LG G D+ K + + G + ++ G H +T SGD+Y
Sbjct: 40 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIY 97
Query: 371 TWGDGIHNLGLLGQVS--EISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFG 428
++G ++ G LG+ + + S P + + L IS+ G H+A + G++F +G
Sbjct: 98 SFG--CNDEGALGRDTSEDGSESKPDLIDLPGKALCISA---GDSHSACLLEDGRVFAWG 152
Query: 429 D--GTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSK 486
+ G +G + P ++ ++ + G H I+ AGK
Sbjct: 153 SFRDSHGNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLV-ILTTAGK---------- 199
Query: 487 KLFTWGDGAEGQLG---------HGDAEPR--VVPLCVKVSDDISFCKV-ACGHSITIAL 534
+FT G +GQLG G R + P + ++ F + A + +
Sbjct: 200 -VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258
Query: 535 TATGQVFSMGSADYGQLGSPGSTGKFP-TRIEGNIKHRYIEDIACGSYHIAVVSSKSEVY 593
+ T +++ G ++ QL +F T I+ +K I IA G +H ++++ +
Sbjct: 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD--IRHIAGGQHHTVILTTDLKCS 316
Query: 594 TWGKGANGQLGHGDNEN-KQTPTLVEALRDKQVKSVVCGSNFTAAICL 640
G+ G+LG GD ++ + PT+V+ L +K V SV CG + A+ +
Sbjct: 317 VVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTI 363
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 300 SIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMV 353
S+ CG + VT G+++SWG G +LG G D P ++ + N HM+
Sbjct: 350 SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 403
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 165/425 (38%), Gaps = 85/425 (20%)
Query: 281 RRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLG----------- 329
R + LP+ E+ ++ S A G H + + ++ ++SWG G LG
Sbjct: 57 RLNPFLPRD-EAKII----SFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLK 111
Query: 330 ------------------HGVEADV---SYPKLIDALNGSNIHMVACGEFHTCAVTLSGD 368
A + S+P L + G + +A + +CA+ +G+
Sbjct: 112 DMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE---GHKVVQLAATDNMSCALFSNGE 168
Query: 369 LYTWGDGIHNLGLLG--QVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFT 426
+Y WG N G+LG Q P KV I + G H + G +F
Sbjct: 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVP-TFSKYNIVQLAPGKDHILFLDEEGMVFA 227
Query: 427 FGDGTFGALGHGDRSSTSVPREVETLKELKTVMA-SCGVWHTAAIVEVAGKTSGSNGLSS 485
+G+G LG R+V LKT+ G+ H I +G+
Sbjct: 228 WGNGQQNQLG----------RKVMERFRLKTLDPRPFGLRHVKYIA--SGENHCFALTKD 275
Query: 486 KKLFTWGDGAEGQLG-HGDAEPRVV---PLCVKVSDDISFCKVACGHSITIALTATGQVF 541
KL +WG GQ G D E + P + + D++ +A G ++ L+ G ++
Sbjct: 276 NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLY 335
Query: 542 SMGSADYGQLGSPGST----------GK-----FPTRIEGNIKHRYIEDIACGSYHIAVV 586
S G D ++G P GK PT++ K + +A GS+H V
Sbjct: 336 SCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK---SVAAGSHHSVAV 392
Query: 587 SSKSEVYTWGKGANGQLGHGDNENK-QTPTLVE--ALRDKQVKSVVCGSNFTAAICLHKG 643
+ Y+WG G +G G E+ + PT ++ A +D + V CG F+ + G
Sbjct: 393 AQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVS----GG 448
Query: 644 VSIAD 648
V ++D
Sbjct: 449 VKLSD 453
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 42/270 (15%)
Query: 368 DLYTWGDGIH---NLGLLGQVSEISH-----WIPRKVSGQMEGLQISSICCGPWHTAAIT 419
D++ WG G LG L + E+ ++PR + +I S G HT A+
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEA------KIISFAVGGMHTLALD 83
Query: 420 SAGKLFTFGDGTFGALGHGDRSSTSVPREVE-------------TLKELKTVMASC---- 462
++++G GALG R +++ +++ L EL++ A
Sbjct: 84 EESNVWSWGCNDVGALG---RDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRES 140
Query: 463 --GVWHTAAIVEVAGKTSGSNGL-SSKKLFTWGDGA--EGQLGHGDAEPRV--VPLCVKV 515
+ +V++A + S L S+ +++ WG EG LG + ++ P V
Sbjct: 141 FPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT 200
Query: 516 SDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSP-GSTGKFPTRIEGNIKHRYIE 574
+ ++A G + L G VF+ G+ QLG + T R+++
Sbjct: 201 FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVK 260
Query: 575 DIACGSYHIAVVSSKSEVYTWGKGANGQLG 604
IA G H ++ +++ +WG GQ G
Sbjct: 261 YIASGENHCFALTKDNKLVSWGLNQFGQCG 290
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 652 CSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCF 704
C C H+C CG ++C CS+K AL P KP RVCD CF
Sbjct: 72 CMACGKGFSVTVRRHHCRQCGNIFCAECSAK----NALTPSSKKPVRVCDACF 120
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 648 DHSICSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKL 707
D C+GC H+C NCG V C CS ++ I +P RVCD C++ L
Sbjct: 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRG--ITEPERVCDACYLAL 77
Query: 708 NTTSESG 714
+++ +G
Sbjct: 78 RSSNMAG 84
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 647 ADHSICSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIK 706
AD +C C H+C NCG V+C C++K+ I K RVCD CF
Sbjct: 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYG--IEKEVRVCDGCFAA 216
Query: 707 L 707
L
Sbjct: 217 L 217
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 652 CSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKL 707
C C H+C CG ++C CS+K AL P KP RVCD CF L
Sbjct: 12 CMACGKGFSVTVRRHHCRQCGNIFCAECSAK----NALTPSSKKPVRVCDACFNDL 63
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 647 ADHSICSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIK 706
D C C H+C CG ++C CSSK S I K RVC+ C+ +
Sbjct: 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCYEQ 219
Query: 707 LNTTSE 712
LN +E
Sbjct: 220 LNRKAE 225
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 652 CSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKL 707
C C H+C NCG ++C CSS + AL P KP RVCD C L
Sbjct: 29 CRQCEKEFSISRRKHHCRNCGHIFCNTCSSN---ELAL-PSYPKPVRVCDSCHTLL 80
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 652 CSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKL 707
C C H+C NCG ++C CSS + AL P KP RVCD C L
Sbjct: 22 CRQCEKEFSISRRKHHCRNCGHIFCNTCSSN---ELAL-PSYPKPVRVCDSCHTLL 73
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 18 VRVLKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGK------EEKQLKLSHVSRIIP 71
++ L KG+ LLK + ++L D K IW + E + + + +
Sbjct: 10 LQALLKGSQLLKVKSSSWRRERFYKLQEDCKT-IWQESRKVMRSPESQLFSIEDIQEVRM 68
Query: 72 GQRTAVFQRYPQPEKEYQSFSLIYRNR--SLDLICKDKDEAELWFTALRALI----SEDN 125
G RT +++ + E + FS++++++ +LDLI +A+ W LR +I S D
Sbjct: 69 GHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHSGSMDQ 128
Query: 126 RCK 128
R K
Sbjct: 129 RQK 131
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 44/166 (26%)
Query: 291 ESTVVLDAQS----IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
E+TV +AQS IA G H L K G++ WG G+L + A
Sbjct: 17 EATVPAEAQSGVDAIAGGYFHG-LALKGGKVLGWGANLNGQL------------TMPAAT 63
Query: 347 GSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKV-SGQMEGLQI 405
S + +A G +H+ A+ G++ WG G + GQ + +P + SG +
Sbjct: 64 QSGVDAIAAGNYHSLALK-DGEVIAWG-GNED----GQTT-----VPAEARSG------V 106
Query: 406 SSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVET 451
+I G W + A+ GK+ +GD + G T+VP E ++
Sbjct: 107 DAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS 143
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 106/312 (33%), Gaps = 92/312 (29%)
Query: 348 SNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISS 407
S + +A G FH A+ G + WG ++ GQ++ +P ++ +
Sbjct: 26 SGVDAIAGGYFHGLALK-GGKVLGWGANLN-----GQLT-----MPAATQSGVD-----A 69
Query: 408 ICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHT 467
I G +H+ A+ DG A G + T+VP E + + + G W +
Sbjct: 70 IAAGNYHSLALK---------DGEVIAWGGNEDGQTTVPAEARSGVD----AIAAGAWAS 116
Query: 468 AAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACG 527
A L K+ WGD ++GQ VP + S G
Sbjct: 117 YA-------------LKDGKVIAWGDDSDGQ--------TTVPAEAQ-----SGVTALDG 150
Query: 528 HSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYHIAVVS 587
T G V + G +GQ P ++D+A G +H ++
Sbjct: 151 GVYTALAVKNGGVIAWGDNYFGQTTVPAEA------------QSGVDDVAGGIFH-SLAL 197
Query: 588 SKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRD--------------KQVKSVVCGSN 633
+V W GDN KQT EAL K K + GS+
Sbjct: 198 KDGKVIAW----------GDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSS 247
Query: 634 FTAAICLHKGVS 645
TA + GVS
Sbjct: 248 RTAPSSVQSGVS 259
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 44/166 (26%)
Query: 291 ESTVVLDAQS----IACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN 346
E+TV +AQS IA G H L K G++ WG G+L + A
Sbjct: 15 EATVPAEAQSGVDAIAGGYFHG-LALKGGKVLGWGANLNGQL------------TMPAAT 61
Query: 347 GSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKV-SGQMEGLQI 405
S + +A G +H+ A+ G++ WG G + GQ + +P + SG +
Sbjct: 62 QSGVDAIAAGNYHSLALK-DGEVIAWG-GNED----GQTT-----VPAEARSG------V 104
Query: 406 SSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVET 451
+I G W + A+ GK+ +GD + G T+VP E ++
Sbjct: 105 DAIAAGAWASYALKD-GKVIAWGDDSDG--------QTTVPAEAQS 141
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 106/312 (33%), Gaps = 92/312 (29%)
Query: 348 SNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISS 407
S + +A G FH A+ G + WG ++ GQ++ +P ++ +
Sbjct: 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLN-----GQLT-----MPAATQSGVD-----A 67
Query: 408 ICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHT 467
I G +H+ A+ DG A G + T+VP E + + + G W +
Sbjct: 68 IAAGNYHSLALK---------DGEVIAWGGNEDGQTTVPAEARSGVD----AIAAGAWAS 114
Query: 468 AAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACG 527
A L K+ WGD ++GQ VP + S G
Sbjct: 115 YA-------------LKDGKVIAWGDDSDGQ--------TTVPAEAQ-----SGVTALDG 148
Query: 528 HSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYHIAVVS 587
T G V + G +GQ P ++D+A G +H ++
Sbjct: 149 GVYTALAVKNGGVIAWGDNYFGQTTVPAEA------------QSGVDDVAGGIFH-SLAL 195
Query: 588 SKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRD--------------KQVKSVVCGSN 633
+V W GDN KQT EAL K K + GS+
Sbjct: 196 KDGKVIAW----------GDNRYKQTTVPTEALSGVSAIASGEWYSLALKNGKVIAWGSS 245
Query: 634 FTAAICLHKGVS 645
TA + GVS
Sbjct: 246 RTAPSSVQSGVS 257
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 644 VSIADHSICSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDC 703
V + C C H+C+ CG + C+ CS K L ++ +VCD C
Sbjct: 370 VPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK---DRXAKVCDGC 426
Query: 704 FIKL 707
F +L
Sbjct: 427 FGEL 430
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 652 CSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCF 704
C C H+C CG V+C +C ++K L E RVC C+
Sbjct: 23 CMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEA----RVCVVCY 71
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S+ T
Sbjct: 109 SAMRAANVKNFIFSSSATV 127
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S+ T
Sbjct: 109 SAMRAANVKNFIFSSSATV 127
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S+ T
Sbjct: 109 SAMRAANVKNFIFSSSATV 127
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S+ T
Sbjct: 109 SAMRAANVKNFIFSSSATV 127
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S T
Sbjct: 109 SAMRAANVKNFIFSSTATV 127
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 648 DHSICSGCXXXXXXXXXXHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCF 704
D C C H+C +CG V+C+ SS L I +P RVCD CF
Sbjct: 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLG--IYEPVRVCDSCF 64
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S T
Sbjct: 109 SAMRAANVKNFIFSSAATV 127
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S T
Sbjct: 109 SAMRAANVKNFIFSSAATV 127
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S T
Sbjct: 109 SAMRAANVKNFIFSSAATV 127
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGSNFTA 636
A+R VK+ + S T
Sbjct: 109 SAMRAANVKNFIFSSAATV 127
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 558 GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLV 617
GK PT +EG+I++ + + I V + + G+ L + DN T L+
Sbjct: 49 GKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLI 108
Query: 618 EALRDKQVKSVVCGS 632
A+R VK+ + S
Sbjct: 109 SAMRAANVKNFIFSS 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,376,650
Number of Sequences: 62578
Number of extensions: 979081
Number of successful extensions: 2378
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 91
length of query: 902
length of database: 14,973,337
effective HSP length: 108
effective length of query: 794
effective length of database: 8,214,913
effective search space: 6522640922
effective search space used: 6522640922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)