Query 002602
Match_columns 902
No_of_seqs 722 out of 2988
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.5E-46 5.3E-51 410.9 30.1 364 248-641 63-465 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.3E-40 5E-45 363.9 25.1 318 304-641 57-410 (476)
3 KOG1427 Uncharacterized conser 100.0 1.6E-40 3.6E-45 342.4 18.8 362 251-641 18-399 (443)
4 KOG1427 Uncharacterized conser 100.0 3.2E-36 7E-41 310.7 17.9 309 247-589 71-399 (443)
5 KOG0783 Uncharacterized conser 99.9 3.7E-26 8E-31 260.4 14.7 305 309-642 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 7.6E-26 1.6E-30 257.9 15.5 307 247-592 136-452 (1267)
7 KOG1428 Inhibitor of type V ad 99.8 7.9E-20 1.7E-24 214.3 24.9 345 249-637 494-891 (3738)
8 cd01248 PH_PLC Phospholipase C 99.8 3.6E-20 7.8E-25 175.4 9.5 104 17-120 2-115 (115)
9 KOG1428 Inhibitor of type V ad 99.8 3.1E-18 6.7E-23 201.2 21.2 264 296-581 569-887 (3738)
10 PF12814 Mcp5_PH: Meiotic cell 99.7 3.4E-17 7.3E-22 156.6 12.6 107 14-123 2-123 (123)
11 KOG0169 Phosphoinositide-speci 99.2 2.7E-12 5.8E-17 149.8 2.6 117 12-128 8-129 (746)
12 KOG1264 Phospholipase C [Lipid 99.2 3.6E-12 7.9E-17 146.7 -0.4 127 1-127 1-136 (1267)
13 PF00415 RCC1: Regulator of ch 99.2 2.9E-11 6.3E-16 97.2 4.6 50 589-638 1-51 (51)
14 PF01363 FYVE: FYVE zinc finge 99.1 2E-11 4.2E-16 104.9 2.4 67 642-708 2-68 (69)
15 KOG0941 E3 ubiquitin protein l 99.0 4.2E-12 9.1E-17 148.8 -7.3 153 286-497 4-156 (850)
16 PF00415 RCC1: Regulator of ch 99.0 3.5E-10 7.5E-15 90.9 5.3 50 314-363 1-51 (51)
17 KOG1818 Membrane trafficking a 99.0 9.8E-11 2.1E-15 135.8 2.6 70 642-713 158-227 (634)
18 smart00064 FYVE Protein presen 99.0 4E-10 8.7E-15 96.4 3.8 65 642-708 3-67 (68)
19 KOG0941 E3 ubiquitin protein l 98.9 7.9E-11 1.7E-15 138.3 -6.1 180 402-590 13-197 (850)
20 PTZ00303 phosphatidylinositol 98.8 3.3E-09 7.1E-14 122.0 3.4 68 641-708 451-530 (1374)
21 KOG1729 FYVE finger containing 98.8 1.7E-09 3.7E-14 116.6 1.0 67 640-709 159-226 (288)
22 PF13713 BRX_N: Transcription 98.8 1.2E-09 2.7E-14 81.1 -0.2 26 872-897 1-26 (39)
23 PF13540 RCC1_2: Regulator of 98.8 1.3E-08 2.7E-13 72.6 4.7 30 573-602 1-30 (30)
24 KOG1819 FYVE finger-containing 98.7 4.2E-09 9.1E-14 116.0 1.8 72 633-706 885-961 (990)
25 PF13540 RCC1_2: Regulator of 98.7 2.4E-08 5.2E-13 71.1 4.8 30 298-327 1-30 (30)
26 cd00065 FYVE FYVE domain; Zinc 98.6 2.7E-08 5.8E-13 82.0 2.8 55 649-705 2-56 (57)
27 KOG2999 Regulator of Rac1, req 98.3 6.7E-08 1.4E-12 109.1 -1.5 110 15-125 534-663 (713)
28 cd01244 PH_RasGAP_CG9209 RAS_G 98.1 2.6E-05 5.7E-10 71.6 11.0 86 24-119 4-97 (98)
29 cd01235 PH_SETbf Set binding f 97.7 0.00032 6.8E-09 64.5 11.2 93 26-121 4-101 (101)
30 KOG1409 Uncharacterized conser 97.7 1.5E-05 3.3E-10 86.0 2.2 84 627-712 255-354 (404)
31 cd01238 PH_Tec Tec pleckstrin 97.7 0.00026 5.7E-09 66.1 10.0 79 36-119 21-105 (106)
32 KOG1842 FYVE finger-containing 97.6 6.9E-06 1.5E-10 91.0 -2.2 67 643-709 174-260 (505)
33 cd01264 PH_melted Melted pleck 97.6 0.00043 9.4E-09 63.8 9.4 76 36-119 19-99 (101)
34 cd01233 Unc104 Unc-104 pleckst 97.5 0.00055 1.2E-08 63.2 9.9 93 21-122 3-99 (100)
35 cd01265 PH_PARIS-1 PARIS-1 ple 97.5 0.00083 1.8E-08 61.5 10.7 83 25-120 3-93 (95)
36 cd01236 PH_outspread Outspread 97.5 0.00054 1.2E-08 63.7 9.4 79 30-119 19-102 (104)
37 PF00169 PH: PH domain; Inter 97.4 0.0022 4.7E-08 57.9 12.0 89 26-121 6-103 (104)
38 smart00233 PH Pleckstrin homol 97.4 0.0015 3.2E-08 58.1 10.3 90 22-121 3-101 (102)
39 cd01266 PH_Gab Gab (Grb2-assoc 97.3 0.0017 3.7E-08 60.8 10.0 81 35-120 18-107 (108)
40 KOG1841 Smad anchor for recept 97.3 0.00013 2.8E-09 88.8 2.9 61 640-703 548-608 (1287)
41 KOG1843 Uncharacterized conser 97.3 7.7E-05 1.7E-09 82.1 0.6 66 642-708 153-219 (473)
42 cd01220 PH_CDEP Chondrocyte-de 97.2 0.0027 5.8E-08 58.6 10.4 88 21-122 3-98 (99)
43 cd01251 PH_centaurin_alpha Cen 97.2 0.0043 9.3E-08 57.6 11.0 90 26-123 4-102 (103)
44 cd01219 PH_FGD FGD (faciogenit 97.0 0.0053 1.2E-07 56.8 10.4 88 21-122 3-100 (101)
45 cd01256 PH_dynamin Dynamin ple 96.9 0.0043 9.3E-08 55.9 7.6 71 33-116 16-100 (110)
46 cd01247 PH_GPBP Goodpasture an 96.8 0.012 2.7E-07 53.3 10.5 79 26-119 4-90 (91)
47 cd00821 PH Pleckstrin homology 96.7 0.0086 1.9E-07 52.5 8.9 75 34-119 14-95 (96)
48 cd01246 PH_oxysterol_bp Oxyste 96.5 0.024 5.1E-07 50.6 10.3 78 27-119 5-90 (91)
49 cd01250 PH_centaurin Centaurin 96.4 0.034 7.3E-07 49.9 10.4 74 33-118 13-92 (94)
50 cd01260 PH_CNK Connector enhan 96.3 0.028 6.1E-07 51.2 9.8 72 35-119 19-95 (96)
51 cd01257 PH_IRS Insulin recepto 96.2 0.048 1E-06 50.5 10.6 75 35-119 13-100 (101)
52 cd00900 PH-like Pleckstrin hom 96.1 0.062 1.3E-06 47.3 10.4 74 34-119 17-98 (99)
53 PF15409 PH_8: Pleckstrin homo 95.9 0.059 1.3E-06 48.5 9.4 80 26-119 2-87 (89)
54 cd01218 PH_phafin2 Phafin2 Pl 95.9 0.081 1.8E-06 49.2 10.6 86 26-124 9-101 (104)
55 cd01252 PH_cytohesin Cytohesin 95.8 0.082 1.8E-06 50.8 10.5 86 26-124 5-116 (125)
56 KOG2059 Ras GTPase-activating 95.7 0.017 3.6E-07 68.3 6.3 97 21-127 565-670 (800)
57 cd01261 PH_SOS Son of Sevenles 95.3 0.16 3.4E-06 48.0 10.3 92 20-123 4-111 (112)
58 KOG4424 Predicted Rho/Rac guan 95.1 0.0074 1.6E-07 69.8 1.0 66 646-714 412-478 (623)
59 cd01245 PH_RasGAP_CG5898 RAS G 94.8 0.2 4.3E-06 46.2 9.1 75 36-119 16-97 (98)
60 cd01241 PH_Akt Akt pleckstrin 94.7 0.19 4E-06 46.6 9.0 87 22-120 3-101 (102)
61 KOG1811 Predicted Zn2+-binding 94.5 0.0041 8.9E-08 71.6 -3.1 64 641-706 314-382 (1141)
62 PF15413 PH_11: Pleckstrin hom 94.2 0.32 7E-06 45.9 9.4 93 26-119 4-111 (112)
63 PF11725 AvrE: Pathogenicity f 94.0 1.5 3.3E-05 57.1 17.5 106 519-642 703-815 (1774)
64 cd01254 PH_PLD Phospholipase D 93.2 0.64 1.4E-05 44.5 9.7 82 36-119 33-120 (121)
65 KOG1265 Phospholipase C [Lipid 93.1 0.34 7.5E-06 58.8 9.1 107 18-126 14-139 (1189)
66 PF08458 PH_2: Plant pleckstri 92.7 1.6 3.4E-05 40.9 10.9 94 26-126 2-108 (110)
67 cd01222 PH_clg Clg (common-sit 92.0 1.2 2.6E-05 41.0 9.3 35 87-121 58-95 (97)
68 KOG4693 Uncharacterized conser 91.4 22 0.00048 38.4 18.9 63 357-428 80-146 (392)
69 KOG0943 Predicted ubiquitin-pr 91.4 0.039 8.4E-07 67.8 -1.4 130 295-432 373-507 (3015)
70 PF02318 FYVE_2: FYVE-type zin 91.3 0.17 3.6E-06 48.3 3.1 50 648-706 53-103 (118)
71 cd01232 PH_TRIO Trio pleckstri 89.1 1.9 4.2E-05 40.8 8.1 86 21-122 6-113 (114)
72 PF03904 DUF334: Domain of unk 88.9 1.8 3.9E-05 45.3 8.4 61 833-895 42-109 (230)
73 PRK15396 murein lipoprotein; P 86.8 1.9 4.2E-05 37.9 6.1 40 835-878 26-65 (78)
74 KOG3669 Uncharacterized conser 86.5 4 8.6E-05 48.0 10.1 104 303-426 190-298 (705)
75 KOG0230 Phosphatidylinositol-4 86.4 0.65 1.4E-05 59.8 4.1 46 650-708 6-51 (1598)
76 cd01253 PH_beta_spectrin Beta- 86.3 6.6 0.00014 36.1 9.9 33 87-119 70-103 (104)
77 PHA01750 hypothetical protein 86.0 1.5 3.3E-05 36.6 4.7 37 829-865 37-73 (75)
78 COG3074 Uncharacterized protei 86.0 2 4.4E-05 36.3 5.5 42 821-862 26-67 (79)
79 TIGR02449 conserved hypothetic 83.8 8.9 0.00019 32.5 8.4 62 836-897 2-63 (65)
80 cd01242 PH_ROK Rok (Rho- assoc 83.3 11 0.00024 35.4 9.6 84 37-122 20-111 (112)
81 cd01228 PH_BCR-related BCR (br 83.0 3.9 8.4E-05 37.2 6.3 81 21-121 3-94 (96)
82 KOG3669 Uncharacterized conser 82.3 36 0.00077 40.5 15.2 107 355-490 190-298 (705)
83 KOG2391 Vacuolar sorting prote 81.9 6.2 0.00014 43.7 8.7 49 822-870 234-282 (365)
84 cd01237 Unc112 Unc-112 pleckst 81.7 11 0.00024 35.2 9.1 72 36-119 20-101 (106)
85 KOG4693 Uncharacterized conser 81.3 38 0.00082 36.7 13.9 62 305-375 80-148 (392)
86 cd01240 PH_beta-ARK Beta adren 80.4 3 6.5E-05 38.8 4.8 78 37-125 21-102 (116)
87 PRK14161 heat shock protein Gr 80.2 10 0.00023 38.8 9.3 72 818-890 10-81 (178)
88 PF02183 HALZ: Homeobox associ 80.2 2.1 4.6E-05 33.6 3.3 32 820-851 12-43 (45)
89 PF04728 LPP: Lipoprotein leuc 80.0 8 0.00017 31.8 6.6 40 835-878 4-43 (56)
90 KOG3551 Syntrophins (type beta 79.9 4.2 9.1E-05 45.6 6.6 111 11-124 145-274 (506)
91 TIGR03752 conj_TIGR03752 integ 78.2 10 0.00022 44.2 9.4 70 828-897 67-144 (472)
92 PF11725 AvrE: Pathogenicity f 78.0 5.9 0.00013 52.1 8.0 72 518-590 743-815 (1774)
93 PTZ00267 NIMA-related protein 77.3 6.2 0.00013 46.7 7.7 89 24-121 380-476 (478)
94 PRK14153 heat shock protein Gr 77.3 15 0.00032 38.2 9.4 69 821-890 25-95 (194)
95 PF04977 DivIC: Septum formati 77.2 5.7 0.00012 34.5 5.6 45 829-873 19-63 (80)
96 PF15406 PH_6: Pleckstrin homo 76.8 6 0.00013 36.9 5.6 64 42-119 43-111 (112)
97 cd01227 PH_Dbs Dbs (DBL's big 76.1 19 0.00041 35.1 9.2 40 85-124 77-118 (133)
98 PRK14160 heat shock protein Gr 75.9 16 0.00035 38.4 9.3 69 821-890 55-123 (211)
99 PF11559 ADIP: Afadin- and alp 75.9 19 0.0004 35.7 9.5 58 829-886 61-118 (151)
100 PF12718 Tropomyosin_1: Tropom 75.6 15 0.00033 36.2 8.7 47 824-870 18-64 (143)
101 PF10211 Ax_dynein_light: Axon 75.6 18 0.0004 37.4 9.6 62 831-895 124-189 (189)
102 PRK14155 heat shock protein Gr 75.4 12 0.00027 39.2 8.3 58 830-888 16-73 (208)
103 PF06428 Sec2p: GDP/GTP exchan 75.3 20 0.00044 33.2 8.7 59 836-894 3-62 (100)
104 PF13863 DUF4200: Domain of un 75.2 17 0.00036 34.7 8.7 74 823-896 21-94 (126)
105 KOG1029 Endocytic adaptor prot 73.5 6.6 0.00014 47.6 6.3 83 814-896 466-555 (1118)
106 KOG3723 PH domain protein Melt 73.3 1.8 3.9E-05 50.5 1.7 83 36-127 754-842 (851)
107 COG4257 Vgb Streptogramin lyas 72.9 1.1E+02 0.0024 33.5 14.7 135 247-427 67-205 (353)
108 PRK14148 heat shock protein Gr 72.9 20 0.00043 37.3 9.0 64 826-890 39-102 (195)
109 PRK14154 heat shock protein Gr 72.5 18 0.0004 37.9 8.7 57 832-889 57-113 (208)
110 PRK14162 heat shock protein Gr 72.4 19 0.00041 37.4 8.7 63 827-890 39-101 (194)
111 PRK09973 putative outer membra 72.2 12 0.00026 33.5 6.2 41 835-879 25-65 (85)
112 cd01239 PH_PKD Protein kinase 72.0 34 0.00075 32.4 9.4 65 26-97 5-74 (117)
113 PF01025 GrpE: GrpE; InterPro 71.8 11 0.00025 37.7 7.0 66 823-889 7-72 (165)
114 PF11559 ADIP: Afadin- and alp 71.5 27 0.00058 34.6 9.4 38 828-865 53-90 (151)
115 PF07569 Hira: TUP1-like enhan 71.4 14 0.00031 39.1 7.9 28 348-375 13-40 (219)
116 KOG2391 Vacuolar sorting prote 71.2 65 0.0014 36.0 12.7 64 824-891 215-278 (365)
117 PF03962 Mnd1: Mnd1 family; I 71.1 7.5 0.00016 40.2 5.5 34 834-867 62-95 (188)
118 KOG1900 Nuclear pore complex, 71.1 85 0.0018 41.0 15.4 217 309-545 93-339 (1311)
119 PRK14143 heat shock protein Gr 71.1 22 0.00047 38.2 9.1 65 825-890 65-129 (238)
120 KOG4424 Predicted Rho/Rac guan 70.6 6.5 0.00014 46.4 5.3 108 15-128 267-376 (623)
121 PRK14156 heat shock protein Gr 70.4 20 0.00043 36.7 8.3 59 831-890 31-89 (177)
122 PRK14139 heat shock protein Gr 70.1 23 0.0005 36.6 8.7 59 830-889 35-93 (185)
123 COG0576 GrpE Molecular chapero 70.0 23 0.0005 36.8 8.8 60 830-890 39-98 (193)
124 KOG1090 Predicted dual-specifi 70.0 3.2 6.9E-05 51.4 2.8 76 37-121 1651-1731(1732)
125 cd01230 PH_EFA6 EFA6 Pleckstri 69.9 45 0.00097 31.8 10.0 39 85-123 74-113 (117)
126 PF09304 Cortex-I_coil: Cortex 69.5 49 0.0011 30.9 9.6 53 817-869 20-72 (107)
127 PRK15422 septal ring assembly 68.7 13 0.00027 32.7 5.4 43 821-863 26-68 (79)
128 PRK14141 heat shock protein Gr 68.6 20 0.00043 37.7 8.0 58 831-889 35-92 (209)
129 PF12718 Tropomyosin_1: Tropom 68.5 22 0.00048 35.1 7.9 21 822-842 37-57 (143)
130 PF06785 UPF0242: Uncharacteri 68.3 14 0.0003 40.9 6.8 52 822-873 129-180 (401)
131 PF06005 DUF904: Protein of un 67.7 26 0.00057 30.4 7.2 56 825-894 16-71 (72)
132 cd01223 PH_Vav Vav pleckstrin 67.5 37 0.00081 32.3 8.7 96 21-123 5-113 (116)
133 KOG0943 Predicted ubiquitin-pr 67.2 5.1 0.00011 50.5 3.7 79 518-596 373-454 (3015)
134 cd01221 PH_ephexin Ephexin Ple 67.0 34 0.00073 33.1 8.5 85 31-118 22-119 (125)
135 PF06364 DUF1068: Protein of u 66.4 15 0.00032 36.7 6.1 63 823-885 69-136 (176)
136 PRK14158 heat shock protein Gr 66.3 34 0.00074 35.6 9.1 63 827-890 40-102 (194)
137 KOG4797 Transcriptional regula 66.2 15 0.00032 34.0 5.5 46 832-893 65-110 (123)
138 PF07888 CALCOCO1: Calcium bin 66.1 23 0.00051 42.2 8.8 46 822-867 152-197 (546)
139 PF10186 Atg14: UV radiation r 65.9 26 0.00057 38.4 9.0 47 819-865 62-108 (302)
140 PF11932 DUF3450: Protein of u 65.7 28 0.0006 37.6 8.8 34 829-862 51-84 (251)
141 KOG4441 Proteins containing BT 65.4 2.1E+02 0.0044 35.0 17.0 58 533-597 471-530 (571)
142 PHA02713 hypothetical protein; 65.0 1.9E+02 0.0041 35.2 16.7 20 356-375 341-360 (557)
143 PRK14151 heat shock protein Gr 64.4 32 0.00069 35.2 8.4 58 831-889 24-81 (176)
144 PLN02153 epithiospecifier prot 64.4 2.4E+02 0.0053 31.5 22.4 17 358-375 130-146 (341)
145 PF04849 HAP1_N: HAP1 N-termin 64.2 14 0.0003 40.9 6.0 36 832-867 232-267 (306)
146 PHA03098 kelch-like protein; P 63.9 1.8E+02 0.0039 34.8 16.2 17 358-375 335-351 (534)
147 PRK14147 heat shock protein Gr 63.5 34 0.00073 34.9 8.3 56 832-888 23-78 (172)
148 PF02403 Seryl_tRNA_N: Seryl-t 63.2 24 0.00051 32.8 6.7 77 818-894 11-92 (108)
149 KOG0982 Centrosomal protein Nu 63.0 31 0.00068 39.4 8.5 71 822-892 299-383 (502)
150 PF09738 DUF2051: Double stran 62.9 71 0.0015 35.6 11.3 51 817-867 78-138 (302)
151 PF04111 APG6: Autophagy prote 62.8 46 0.001 37.3 10.1 44 825-868 55-98 (314)
152 PRK11637 AmiB activator; Provi 62.7 30 0.00066 40.4 9.1 33 833-865 60-92 (428)
153 PF14197 Cep57_CLD_2: Centroso 62.7 57 0.0012 28.1 8.3 61 831-894 2-65 (69)
154 PRK11637 AmiB activator; Provi 62.4 32 0.00069 40.3 9.1 46 825-870 45-90 (428)
155 PRK00888 ftsB cell division pr 62.3 19 0.00042 33.6 5.8 34 829-862 29-62 (105)
156 KOG0230 Phosphatidylinositol-4 62.1 3.3 7.3E-05 53.7 1.0 34 644-679 92-125 (1598)
157 PF10168 Nup88: Nuclear pore c 62.1 45 0.00097 41.7 10.7 76 819-894 535-618 (717)
158 cd01224 PH_Collybistin Collybi 61.9 51 0.0011 31.1 8.4 84 27-118 8-104 (109)
159 PF05377 FlaC_arch: Flagella a 61.8 29 0.00064 28.5 5.9 40 831-870 4-43 (55)
160 PF08317 Spc7: Spc7 kinetochor 61.4 23 0.0005 39.9 7.4 33 835-867 231-263 (325)
161 KOG4196 bZIP transcription fac 61.3 17 0.00036 34.9 5.2 36 823-858 77-112 (135)
162 PF12325 TMF_TATA_bd: TATA ele 60.9 39 0.00085 32.4 7.7 27 831-857 27-53 (120)
163 KOG1274 WD40 repeat protein [G 60.9 1.1E+02 0.0023 38.5 13.1 72 355-432 13-88 (933)
164 PRK09039 hypothetical protein; 60.5 43 0.00094 38.0 9.5 35 833-867 136-170 (343)
165 PF09304 Cortex-I_coil: Cortex 60.2 46 0.001 31.0 7.7 58 818-876 28-85 (107)
166 PRK14144 heat shock protein Gr 59.6 45 0.00098 34.8 8.5 58 832-890 50-107 (199)
167 PRK14145 heat shock protein Gr 59.6 53 0.0011 34.2 9.0 61 829-890 47-107 (196)
168 KOG0241 Kinesin-like protein [ 59.5 21 0.00045 44.5 6.8 70 823-895 360-430 (1714)
169 PRK00409 recombination and DNA 59.1 37 0.0008 43.0 9.4 15 106-120 39-53 (782)
170 KOG0977 Nuclear envelope prote 58.9 23 0.0005 42.3 7.0 79 817-895 96-174 (546)
171 TIGR01562 FdhE formate dehydro 58.9 6.7 0.00015 43.6 2.5 75 629-712 189-267 (305)
172 KOG4403 Cell surface glycoprot 58.9 23 0.0005 40.4 6.6 51 829-879 304-374 (575)
173 PF07106 TBPIP: Tat binding pr 58.7 38 0.00082 34.2 7.8 56 833-888 78-135 (169)
174 PF13815 Dzip-like_N: Iguana/D 57.8 18 0.00038 34.5 4.9 47 818-864 64-110 (118)
175 PF07798 DUF1640: Protein of u 57.5 38 0.00083 34.6 7.7 66 822-889 86-159 (177)
176 PF04728 LPP: Lipoprotein leuc 57.5 34 0.00075 28.2 5.7 37 831-867 7-43 (56)
177 KOG0315 G-protein beta subunit 57.5 2.8E+02 0.0061 30.1 14.2 186 399-595 5-194 (311)
178 PRK14146 heat shock protein Gr 57.0 48 0.001 35.1 8.4 60 830-890 57-116 (215)
179 PF05103 DivIVA: DivIVA protei 57.0 2.4 5.2E-05 40.8 -1.2 21 857-877 69-89 (131)
180 smart00787 Spc7 Spc7 kinetocho 56.7 28 0.0006 39.0 6.9 45 845-889 243-287 (312)
181 TIGR01069 mutS2 MutS2 family p 56.6 45 0.00099 42.1 9.6 16 106-121 39-54 (771)
182 KOG0612 Rho-associated, coiled 56.6 31 0.00067 44.4 7.8 61 835-895 466-527 (1317)
183 PF01166 TSC22: TSC-22/dip/bun 56.4 19 0.0004 29.8 3.9 31 832-862 12-42 (59)
184 PRK14140 heat shock protein Gr 56.4 69 0.0015 33.3 9.2 58 832-890 42-99 (191)
185 PRK14163 heat shock protein Gr 56.2 54 0.0012 34.6 8.5 60 829-889 42-101 (214)
186 TIGR02894 DNA_bind_RsfA transc 55.8 34 0.00074 34.3 6.5 38 825-862 102-139 (161)
187 cd01263 PH_anillin Anillin Ple 55.6 73 0.0016 30.6 8.7 17 102-118 104-120 (122)
188 PF03904 DUF334: Domain of unk 55.3 31 0.00066 36.4 6.4 78 818-896 41-133 (230)
189 PF12329 TMF_DNA_bd: TATA elem 54.9 45 0.00097 29.1 6.5 39 830-868 22-60 (74)
190 PF10186 Atg14: UV radiation r 54.6 70 0.0015 35.0 9.8 37 822-858 72-108 (302)
191 PF06102 DUF947: Domain of unk 54.2 1.8E+02 0.0039 29.6 11.7 63 814-876 43-107 (168)
192 PRK14157 heat shock protein Gr 54.2 55 0.0012 34.9 8.2 58 830-888 80-137 (227)
193 PF04899 MbeD_MobD: MbeD/MobD 54.1 24 0.00052 30.5 4.6 40 822-861 30-69 (70)
194 PRK03564 formate dehydrogenase 54.1 13 0.00027 41.5 3.7 75 629-712 192-267 (309)
195 KOG4552 Vitamin-D-receptor int 53.9 72 0.0016 33.1 8.6 38 833-870 66-103 (272)
196 PF04508 Pox_A_type_inc: Viral 53.8 15 0.00033 24.6 2.5 17 834-850 1-17 (23)
197 PF04156 IncA: IncA protein; 53.8 47 0.001 34.1 7.8 23 870-892 124-146 (191)
198 PF10458 Val_tRNA-synt_C: Valy 53.2 18 0.0004 30.6 3.8 54 842-895 5-65 (66)
199 PF12325 TMF_TATA_bd: TATA ele 53.0 79 0.0017 30.3 8.4 61 819-879 36-99 (120)
200 PF03310 Cauli_DNA-bind: Cauli 52.7 55 0.0012 31.2 7.1 21 871-891 50-70 (121)
201 PF11853 DUF3373: Protein of u 52.7 12 0.00026 44.1 3.3 34 832-866 23-56 (489)
202 PHA02047 phage lambda Rz1-like 52.6 61 0.0013 29.5 6.9 32 834-865 34-65 (101)
203 PRK13729 conjugal transfer pil 52.3 23 0.0005 41.5 5.5 19 875-893 103-121 (475)
204 PF15404 PH_4: Pleckstrin homo 52.0 93 0.002 32.2 9.3 24 23-46 2-25 (185)
205 PRK09343 prefoldin subunit bet 51.3 43 0.00093 32.1 6.4 45 825-869 69-113 (121)
206 PF15035 Rootletin: Ciliary ro 51.1 45 0.00098 34.3 6.9 71 823-893 5-91 (182)
207 PRK05431 seryl-tRNA synthetase 50.8 39 0.00085 39.5 7.3 78 817-894 10-91 (425)
208 COG1842 PspA Phage shock prote 50.8 55 0.0012 34.9 7.7 58 834-893 45-102 (225)
209 PF07888 CALCOCO1: Calcium bin 50.6 62 0.0014 38.8 8.8 70 823-892 146-215 (546)
210 PF07407 Seadorna_VP6: Seadorn 50.6 38 0.00082 37.4 6.4 23 824-846 36-58 (420)
211 PRK08475 F0F1 ATP synthase sub 50.5 86 0.0019 31.7 8.8 59 820-878 46-104 (167)
212 PF13815 Dzip-like_N: Iguana/D 50.5 40 0.00087 32.1 6.0 38 827-864 66-103 (118)
213 PF10883 DUF2681: Protein of u 50.4 56 0.0012 29.5 6.4 52 833-890 29-80 (87)
214 COG4345 Uncharacterized protei 50.2 56 0.0012 32.8 6.9 50 845-894 122-171 (181)
215 KOG2106 Uncharacterized conser 50.2 5.1E+02 0.011 30.8 19.2 60 299-375 215-275 (626)
216 PF15035 Rootletin: Ciliary ro 49.9 39 0.00084 34.8 6.2 43 823-865 91-133 (182)
217 KOG0278 Serine/threonine kinas 49.8 2.1E+02 0.0046 30.9 11.5 38 337-375 134-173 (334)
218 PF14662 CCDC155: Coiled-coil 49.6 1.2E+02 0.0027 31.3 9.6 43 821-863 9-51 (193)
219 PLN02153 epithiospecifier prot 49.4 4.2E+02 0.0091 29.6 24.5 16 582-597 307-322 (341)
220 cd00632 Prefoldin_beta Prefold 49.4 42 0.00091 31.1 5.9 44 824-867 60-103 (105)
221 PF15619 Lebercilin: Ciliary p 49.3 63 0.0014 33.7 7.7 59 835-893 119-181 (194)
222 PF13935 Ead_Ea22: Ead/Ea22-li 49.2 88 0.0019 30.7 8.4 60 831-890 71-133 (139)
223 TIGR00414 serS seryl-tRNA synt 48.7 45 0.00097 39.0 7.3 79 817-895 10-95 (418)
224 PF14593 PH_3: PH domain; PDB: 48.7 1.7E+02 0.0036 27.4 9.6 72 36-123 27-101 (104)
225 PF03908 Sec20: Sec20; InterP 48.5 1.1E+02 0.0023 27.7 8.2 62 818-890 3-64 (92)
226 PRK10884 SH3 domain-containing 48.4 1E+02 0.0022 32.5 9.1 14 833-846 99-112 (206)
227 COG1730 GIM5 Predicted prefold 48.3 50 0.0011 32.7 6.4 49 819-867 93-141 (145)
228 PF10211 Ax_dynein_light: Axon 48.3 1E+02 0.0022 32.0 9.0 56 835-890 121-177 (189)
229 KOG3799 Rab3 effector RIM1 and 48.2 7.9 0.00017 37.1 0.8 53 647-706 63-116 (169)
230 COG2433 Uncharacterized conser 48.2 80 0.0017 38.1 9.0 23 573-595 246-269 (652)
231 PHA02713 hypothetical protein; 48.1 3.7E+02 0.0081 32.6 15.3 19 412-430 342-360 (557)
232 KOG4657 Uncharacterized conser 47.9 65 0.0014 33.9 7.3 48 833-880 92-142 (246)
233 cd01249 PH_oligophrenin Oligop 47.4 28 0.00062 32.4 4.3 37 82-118 64-102 (104)
234 TIGR02338 gimC_beta prefoldin, 47.3 45 0.00098 31.2 5.8 43 826-868 66-108 (110)
235 COG2433 Uncharacterized conser 47.2 73 0.0016 38.3 8.5 24 521-544 246-270 (652)
236 PF06005 DUF904: Protein of un 47.1 60 0.0013 28.2 5.9 29 824-852 29-57 (72)
237 PRK14164 heat shock protein Gr 46.9 86 0.0019 33.3 8.3 36 835-870 78-113 (218)
238 PF12329 TMF_DNA_bd: TATA elem 46.7 1E+02 0.0022 26.9 7.4 41 825-865 24-64 (74)
239 PF07975 C1_4: TFIIH C1-like d 46.4 5.5 0.00012 32.1 -0.4 29 652-680 2-36 (51)
240 KOG4603 TBP-1 interacting prot 46.2 1.1E+02 0.0024 30.9 8.3 32 831-862 83-114 (201)
241 PF07569 Hira: TUP1-like enhan 46.2 91 0.002 33.0 8.5 30 570-599 12-41 (219)
242 PRK13729 conjugal transfer pil 46.0 66 0.0014 37.8 7.9 24 841-864 97-120 (475)
243 PF11068 YlqD: YlqD protein; 46.0 91 0.002 30.4 7.7 59 837-898 23-89 (131)
244 PRK14159 heat shock protein Gr 45.9 99 0.0021 31.7 8.3 57 833-890 29-85 (176)
245 KOG0930 Guanine nucleotide exc 45.7 1E+02 0.0022 33.6 8.5 85 25-124 264-378 (395)
246 PF09006 Surfac_D-trimer: Lung 45.7 46 0.001 26.2 4.4 26 837-862 2-27 (46)
247 PRK10884 SH3 domain-containing 45.5 53 0.0011 34.6 6.5 34 833-866 117-150 (206)
248 smart00338 BRLZ basic region l 45.5 43 0.00093 28.1 4.8 35 830-864 29-63 (65)
249 PF13851 GAS: Growth-arrest sp 45.0 92 0.002 32.6 8.2 69 822-894 36-104 (201)
250 PLN02320 seryl-tRNA synthetase 44.8 36 0.00079 40.5 5.7 77 816-894 74-155 (502)
251 KOG0649 WD40 repeat protein [G 44.7 4.4E+02 0.0096 28.6 18.2 87 246-345 25-112 (325)
252 PRK02119 hypothetical protein; 44.3 1.3E+02 0.0028 26.3 7.6 32 834-865 2-33 (73)
253 PF00628 PHD: PHD-finger; Int 44.1 18 0.00038 28.6 2.1 49 652-705 2-50 (51)
254 PF08647 BRE1: BRE1 E3 ubiquit 44.0 1.3E+02 0.0029 27.5 8.2 45 825-869 8-52 (96)
255 cd00632 Prefoldin_beta Prefold 43.9 42 0.00092 31.1 5.0 45 818-862 61-105 (105)
256 PTZ00446 vacuolar sorting prot 43.9 62 0.0013 33.6 6.6 39 826-864 19-57 (191)
257 COG0711 AtpF F0F1-type ATP syn 43.4 1.3E+02 0.0028 30.3 8.7 56 821-876 31-86 (161)
258 PF09726 Macoilin: Transmembra 43.2 54 0.0012 40.9 7.1 77 823-899 541-625 (697)
259 COG3064 TolA Membrane protein 43.2 93 0.002 34.4 7.9 25 860-884 145-169 (387)
260 PF04156 IncA: IncA protein; 43.1 1.6E+02 0.0035 30.1 9.7 9 833-841 94-102 (191)
261 KOG0288 WD40 repeat protein Ti 43.0 81 0.0018 36.2 7.7 73 818-890 53-135 (459)
262 PF10267 Tmemb_cc2: Predicted 43.0 2.3E+02 0.0051 32.8 11.6 19 823-841 222-240 (395)
263 COG1382 GimC Prefoldin, chaper 42.9 49 0.0011 31.6 5.2 39 831-869 74-112 (119)
264 PRK14161 heat shock protein Gr 42.9 1.3E+02 0.0029 30.8 8.8 35 823-857 29-63 (178)
265 PF07439 DUF1515: Protein of u 42.9 1.6E+02 0.0034 27.7 8.1 75 824-900 5-86 (112)
266 TIGR01063 gyrA DNA gyrase, A s 42.9 8.3E+02 0.018 31.2 21.9 122 301-436 542-674 (800)
267 KOG2129 Uncharacterized conser 42.9 1.1E+02 0.0024 35.0 8.7 76 819-899 245-337 (552)
268 KOG1729 FYVE finger containing 42.8 7.6 0.00017 42.8 -0.2 64 643-706 14-81 (288)
269 TIGR03185 DNA_S_dndD DNA sulfu 42.5 87 0.0019 38.8 8.9 36 830-865 431-466 (650)
270 KOG3433 Protein involved in me 42.5 1.1E+02 0.0023 31.4 7.7 55 838-892 85-139 (203)
271 PRK09174 F0F1 ATP synthase sub 42.5 1.2E+02 0.0027 31.7 8.7 56 822-877 79-134 (204)
272 TIGR01069 mutS2 MutS2 family p 42.4 93 0.002 39.4 9.1 15 861-875 556-570 (771)
273 TIGR02209 ftsL_broad cell divi 42.3 78 0.0017 27.8 6.3 35 828-862 25-59 (85)
274 PRK14472 F0F1 ATP synthase sub 42.2 1.4E+02 0.0029 30.4 8.8 58 821-878 43-100 (175)
275 PF05957 DUF883: Bacterial pro 42.1 1.5E+02 0.0033 26.7 8.3 45 831-875 2-47 (94)
276 PF13094 CENP-Q: CENP-Q, a CEN 42.1 1.2E+02 0.0026 30.3 8.3 56 822-877 22-84 (160)
277 PF15236 CCDC66: Coiled-coil d 42.0 1.7E+02 0.0037 29.5 9.0 41 856-897 116-156 (157)
278 KOG0804 Cytoplasmic Zn-finger 42.0 1.2E+02 0.0026 35.3 8.9 44 823-866 350-400 (493)
279 PF00038 Filament: Intermediat 41.8 1.6E+02 0.0034 32.7 10.1 73 818-890 59-138 (312)
280 PF10018 Med4: Vitamin-D-recep 41.8 60 0.0013 33.5 6.2 46 822-867 4-55 (188)
281 PRK03947 prefoldin subunit alp 41.7 46 0.00099 32.5 5.1 41 822-862 96-136 (140)
282 smart00030 CLb CLUSTERIN Beta 41.6 1.3E+02 0.0028 31.3 8.2 57 829-885 17-80 (206)
283 PF00038 Filament: Intermediat 41.4 96 0.0021 34.4 8.3 68 826-893 46-113 (312)
284 CHL00019 atpF ATP synthase CF0 41.3 1.3E+02 0.0028 30.9 8.5 59 821-879 49-107 (184)
285 PF02403 Seryl_tRNA_N: Seryl-t 41.3 94 0.002 28.8 6.9 63 832-894 34-99 (108)
286 smart00502 BBC B-Box C-termina 41.1 1.5E+02 0.0032 27.5 8.5 43 822-864 9-51 (127)
287 PF03962 Mnd1: Mnd1 family; I 41.0 1.2E+02 0.0027 31.3 8.3 26 817-842 59-84 (188)
288 PRK06231 F0F1 ATP synthase sub 41.0 1.4E+02 0.003 31.4 8.8 60 819-878 71-130 (205)
289 PRK09039 hypothetical protein; 40.7 1.6E+02 0.0035 33.4 10.0 73 818-892 128-207 (343)
290 KOG3564 GTPase-activating prot 40.6 75 0.0016 37.1 7.0 68 833-900 27-111 (604)
291 PRK10869 recombination and rep 40.4 88 0.0019 38.0 8.3 42 855-896 341-387 (553)
292 TIGR03545 conserved hypothetic 40.4 1.1E+02 0.0024 37.2 8.9 43 855-897 219-261 (555)
293 PF04420 CHD5: CHD5-like prote 40.3 49 0.0011 33.4 5.1 38 826-863 39-88 (161)
294 PF02388 FemAB: FemAB family; 40.3 70 0.0015 37.2 7.2 46 826-871 241-296 (406)
295 KOG2196 Nuclear porin [Nuclear 40.2 1.6E+02 0.0034 31.6 8.8 35 863-897 172-206 (254)
296 PF13851 GAS: Growth-arrest sp 40.1 1.3E+02 0.0029 31.4 8.5 73 823-895 89-169 (201)
297 COG0497 RecN ATPase involved i 40.1 91 0.002 37.6 8.0 60 834-895 325-387 (557)
298 PRK14149 heat shock protein Gr 40.0 1.4E+02 0.003 31.1 8.3 53 835-888 44-96 (191)
299 KOG4552 Vitamin-D-receptor int 39.9 1.3E+02 0.0028 31.3 7.9 43 832-874 72-114 (272)
300 PF05529 Bap31: B-cell recepto 39.9 52 0.0011 33.9 5.5 13 854-866 160-172 (192)
301 PF09728 Taxilin: Myosin-like 39.3 1.1E+02 0.0025 34.2 8.3 56 828-883 129-195 (309)
302 PF13747 DUF4164: Domain of un 39.2 1.3E+02 0.0028 27.3 7.1 51 832-889 37-87 (89)
303 COG4942 Membrane-bound metallo 39.1 1.1E+02 0.0024 35.5 8.3 16 867-882 246-261 (420)
304 PF04841 Vps16_N: Vps16, N-ter 39.1 6.8E+02 0.015 29.1 16.6 25 571-595 217-243 (410)
305 TIGR02894 DNA_bind_RsfA transc 39.1 95 0.0021 31.2 6.7 35 831-865 101-135 (161)
306 PF07851 TMPIT: TMPIT-like pro 39.0 72 0.0016 35.9 6.6 25 873-897 65-89 (330)
307 PF13094 CENP-Q: CENP-Q, a CEN 38.8 1.7E+02 0.0037 29.2 8.9 67 830-896 23-89 (160)
308 cd01243 PH_MRCK MRCK (myotonic 38.7 2.4E+02 0.0052 27.1 9.0 24 98-121 96-119 (122)
309 PRK00736 hypothetical protein; 38.6 61 0.0013 27.8 4.7 35 825-859 17-51 (68)
310 PF14282 FlxA: FlxA-like prote 38.6 1.6E+02 0.0035 27.4 8.0 57 819-875 18-78 (106)
311 COG3883 Uncharacterized protei 38.6 1.1E+02 0.0024 33.3 7.8 42 822-863 40-81 (265)
312 PF01486 K-box: K-box region; 38.5 59 0.0013 29.9 5.0 62 827-890 12-82 (100)
313 PRK00295 hypothetical protein; 38.4 67 0.0015 27.5 4.9 35 825-859 17-51 (68)
314 KOG0291 WD40-repeat-containing 38.3 9E+02 0.02 30.3 25.0 120 298-432 300-424 (893)
315 PF01920 Prefoldin_2: Prefoldi 38.3 52 0.0011 30.0 4.7 41 826-866 61-101 (106)
316 PLN02678 seryl-tRNA synthetase 38.3 87 0.0019 36.9 7.5 77 817-894 14-96 (448)
317 COG1340 Uncharacterized archae 38.3 1.5E+02 0.0033 32.7 8.8 61 823-886 37-97 (294)
318 PF04871 Uso1_p115_C: Uso1 / p 38.2 1.8E+02 0.0039 28.5 8.5 35 858-892 80-114 (136)
319 PRK09973 putative outer membra 38.2 82 0.0018 28.3 5.5 39 831-869 28-66 (85)
320 KOG0976 Rho/Rac1-interacting s 38.1 92 0.002 38.5 7.5 63 825-894 90-152 (1265)
321 KOG4460 Nuclear pore complex, 38.0 1.5E+02 0.0032 35.3 8.9 54 841-894 588-641 (741)
322 PF01093 Clusterin: Clusterin; 37.9 1.2E+02 0.0025 35.6 8.3 43 844-886 33-75 (436)
323 KOG0250 DNA repair protein RAD 37.8 1.4E+02 0.003 38.5 9.4 72 822-893 736-807 (1074)
324 PF11853 DUF3373: Protein of u 37.8 22 0.00048 41.9 2.5 31 832-862 29-59 (489)
325 PF07464 ApoLp-III: Apolipopho 37.6 24 0.00051 35.4 2.3 25 852-876 85-109 (155)
326 PF04977 DivIC: Septum formati 37.5 66 0.0014 27.7 5.0 34 834-867 17-50 (80)
327 PRK13453 F0F1 ATP synthase sub 37.5 1.6E+02 0.0035 29.8 8.6 59 819-877 41-99 (173)
328 PHA02562 46 endonuclease subun 37.5 1.1E+02 0.0023 37.0 8.5 60 818-877 165-224 (562)
329 PF10828 DUF2570: Protein of u 37.5 2.1E+02 0.0045 26.9 8.6 36 833-868 24-59 (110)
330 PF04568 IATP: Mitochondrial A 37.5 61 0.0013 30.1 4.8 24 842-865 73-100 (100)
331 PRK05759 F0F1 ATP synthase sub 37.4 1.9E+02 0.004 28.6 8.8 58 821-878 29-86 (156)
332 COG1579 Zn-ribbon protein, pos 37.3 1.7E+02 0.0038 31.4 8.9 43 832-874 115-157 (239)
333 PRK13454 F0F1 ATP synthase sub 37.0 1.5E+02 0.0032 30.4 8.2 52 823-877 58-112 (181)
334 PF06810 Phage_GP20: Phage min 37.0 2.3E+02 0.005 28.4 9.3 21 828-848 28-48 (155)
335 PF12777 MT: Microtubule-bindi 37.0 1.5E+02 0.0032 33.7 9.0 25 842-866 16-40 (344)
336 PF08614 ATG16: Autophagy prot 36.9 1.2E+02 0.0025 31.5 7.5 45 821-865 103-147 (194)
337 COG3879 Uncharacterized protei 36.9 98 0.0021 33.3 6.9 30 832-861 55-84 (247)
338 KOG4005 Transcription factor X 36.8 70 0.0015 33.9 5.6 44 821-864 98-141 (292)
339 KOG3478 Prefoldin subunit 6, K 36.7 72 0.0016 29.9 5.0 43 823-865 72-114 (120)
340 PF12777 MT: Microtubule-bindi 36.7 99 0.0021 35.1 7.5 59 833-891 227-292 (344)
341 COG1340 Uncharacterized archae 36.6 1.8E+02 0.004 32.2 9.0 29 834-862 158-186 (294)
342 KOG4001 Axonemal dynein light 36.6 1.4E+02 0.0031 30.9 7.6 61 833-893 184-248 (259)
343 PF14362 DUF4407: Domain of un 36.6 96 0.0021 34.4 7.3 56 840-895 134-201 (301)
344 KOG1760 Molecular chaperone Pr 36.5 1.8E+02 0.0039 27.9 7.7 66 830-895 33-117 (131)
345 PF04762 IKI3: IKI3 family; I 36.5 1E+03 0.022 31.0 17.3 203 347-595 426-636 (928)
346 COG3879 Uncharacterized protei 36.3 1E+02 0.0022 33.2 6.9 43 824-866 54-96 (247)
347 PF07989 Microtub_assoc: Micro 36.2 67 0.0014 28.2 4.6 23 845-867 47-69 (75)
348 PF07407 Seadorna_VP6: Seadorn 36.1 94 0.002 34.5 6.6 54 829-887 34-87 (420)
349 PHA03098 kelch-like protein; P 36.1 2.3E+02 0.0051 33.9 11.1 17 528-545 381-397 (534)
350 PF04102 SlyX: SlyX; InterPro 36.1 57 0.0012 28.0 4.1 35 826-860 17-51 (69)
351 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.0 1.9E+02 0.0042 27.9 8.4 59 825-883 8-66 (132)
352 PF03920 TLE_N: Groucho/TLE N- 35.8 57 0.0012 31.6 4.5 34 830-863 26-59 (135)
353 PRK14011 prefoldin subunit alp 35.7 69 0.0015 31.7 5.2 46 833-889 2-47 (144)
354 PRK13455 F0F1 ATP synthase sub 35.6 2E+02 0.0043 29.5 8.9 56 822-877 53-108 (184)
355 PTZ00464 SNF-7-like protein; P 35.5 80 0.0017 33.4 6.0 29 837-865 21-49 (211)
356 KOG4441 Proteins containing BT 35.3 3.4E+02 0.0074 33.1 12.2 56 485-545 475-530 (571)
357 COG1382 GimC Prefoldin, chaper 34.7 1.1E+02 0.0025 29.2 6.3 46 817-862 67-112 (119)
358 PF15358 TSKS: Testis-specific 34.6 2.7E+02 0.0058 32.0 10.0 82 813-894 118-213 (558)
359 PF00261 Tropomyosin: Tropomyo 34.5 3E+02 0.0064 29.5 10.4 29 843-871 164-192 (237)
360 PF00170 bZIP_1: bZIP transcri 34.4 1.2E+02 0.0025 25.4 5.8 27 835-861 27-53 (64)
361 KOG3229 Vacuolar sorting prote 34.2 2.8E+02 0.0061 29.0 9.3 65 822-886 13-79 (227)
362 PF07191 zinc-ribbons_6: zinc- 34.2 20 0.00043 30.9 1.0 23 651-673 3-25 (70)
363 PRK07352 F0F1 ATP synthase sub 34.1 1.8E+02 0.0039 29.5 8.2 59 820-878 43-101 (174)
364 PF13870 DUF4201: Domain of un 34.1 1.7E+02 0.0037 29.7 8.1 36 837-872 45-80 (177)
365 COG1579 Zn-ribbon protein, pos 34.0 2.1E+02 0.0046 30.8 8.9 56 825-880 101-156 (239)
366 PF09730 BicD: Microtubule-ass 34.0 1.8E+02 0.0038 36.4 9.4 51 842-892 406-456 (717)
367 smart00706 TECPR Beta propelle 34.0 76 0.0016 23.0 4.0 25 348-372 8-33 (35)
368 PF03961 DUF342: Protein of un 33.9 1.4E+02 0.003 35.3 8.4 18 831-848 338-355 (451)
369 PF12072 DUF3552: Domain of un 33.9 1.2E+02 0.0025 31.7 7.0 30 846-875 122-151 (201)
370 PRK10132 hypothetical protein; 33.8 3E+02 0.0066 25.9 8.9 64 827-890 12-80 (108)
371 PF06156 DUF972: Protein of un 33.7 1.1E+02 0.0025 28.7 6.0 46 824-869 12-57 (107)
372 PF14992 TMCO5: TMCO5 family 33.5 1.4E+02 0.0031 32.7 7.6 19 823-841 73-91 (280)
373 COG3883 Uncharacterized protei 33.5 1.6E+02 0.0036 32.1 8.0 58 830-887 41-98 (265)
374 PF04102 SlyX: SlyX; InterPro 33.5 2.3E+02 0.0049 24.3 7.4 48 842-896 5-52 (69)
375 PRK14154 heat shock protein Gr 33.4 1.9E+02 0.0042 30.5 8.3 40 822-861 61-100 (208)
376 PF11932 DUF3450: Protein of u 33.2 1.9E+02 0.0041 31.2 8.7 24 834-857 49-72 (251)
377 PRK14471 F0F1 ATP synthase sub 33.2 3E+02 0.0066 27.5 9.7 58 821-878 33-90 (164)
378 cd01259 PH_Apbb1ip Apbb1ip (Am 33.1 2.5E+02 0.0055 26.6 8.1 91 23-121 3-108 (114)
379 PF08172 CASP_C: CASP C termin 33.0 1.3E+02 0.0027 32.7 7.2 42 815-856 81-122 (248)
380 TIGR03319 YmdA_YtgF conserved 33.0 96 0.0021 37.3 6.9 16 860-875 134-149 (514)
381 PF08581 Tup_N: Tup N-terminal 32.9 1.5E+02 0.0032 26.4 6.3 46 821-866 5-50 (79)
382 KOG3751 Growth factor receptor 32.9 1.4E+02 0.003 35.5 7.6 91 23-124 320-427 (622)
383 KOG0239 Kinesin (KAR3 subfamil 32.9 1.6E+02 0.0036 36.5 9.0 70 825-894 239-311 (670)
384 CHL00118 atpG ATP synthase CF0 32.8 2.5E+02 0.0053 28.0 8.8 58 821-878 47-104 (156)
385 PF04111 APG6: Autophagy prote 32.7 2.3E+02 0.005 31.8 9.5 45 822-866 45-89 (314)
386 KOG0646 WD40 repeat protein [G 32.7 8.8E+02 0.019 28.5 16.3 26 519-544 220-245 (476)
387 PRK12704 phosphodiesterase; Pr 32.7 97 0.0021 37.3 6.9 66 823-893 103-168 (520)
388 PRK14127 cell division protein 32.7 72 0.0016 30.1 4.5 37 830-866 33-69 (109)
389 PRK04406 hypothetical protein; 32.6 92 0.002 27.3 4.9 10 886-895 49-58 (75)
390 PRK02793 phi X174 lysis protei 32.5 84 0.0018 27.3 4.6 25 828-852 23-47 (72)
391 PRK05729 valS valyl-tRNA synth 32.5 55 0.0012 42.1 5.0 54 842-895 812-872 (874)
392 PRK14160 heat shock protein Gr 32.5 2.2E+02 0.0048 30.1 8.6 38 835-872 62-99 (211)
393 PF10046 BLOC1_2: Biogenesis o 32.5 4E+02 0.0086 24.5 9.6 47 818-864 19-65 (99)
394 TIGR03752 conj_TIGR03752 integ 32.4 81 0.0018 37.1 5.9 20 822-841 75-94 (472)
395 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.3 2.7E+02 0.0059 26.9 8.8 62 831-892 7-68 (132)
396 PRK15396 murein lipoprotein; P 32.1 1.2E+02 0.0026 26.9 5.5 31 832-862 30-60 (78)
397 PF10224 DUF2205: Predicted co 32.1 1.3E+02 0.0029 26.7 5.9 36 826-861 15-50 (80)
398 PRK13461 F0F1 ATP synthase sub 31.9 2.1E+02 0.0046 28.4 8.2 58 821-878 30-87 (159)
399 KOG2991 Splicing regulator [RN 31.8 46 0.001 35.6 3.4 67 815-881 245-318 (330)
400 PLN02372 violaxanthin de-epoxi 31.7 1.2E+02 0.0025 35.0 6.7 46 819-865 375-420 (455)
401 PRK13460 F0F1 ATP synthase sub 31.7 2.5E+02 0.0055 28.4 8.8 58 821-878 41-98 (173)
402 PRK10698 phage shock protein P 31.6 3E+02 0.0066 29.2 9.7 59 834-892 45-108 (222)
403 PRK04325 hypothetical protein; 31.6 88 0.0019 27.3 4.6 11 885-895 46-56 (74)
404 PF11544 Spc42p: Spindle pole 31.5 1.7E+02 0.0038 25.7 6.2 30 825-854 10-39 (76)
405 TIGR01730 RND_mfp RND family e 31.4 1.9E+02 0.0042 31.7 8.7 32 831-862 61-92 (322)
406 PRK07353 F0F1 ATP synthase sub 31.4 2.6E+02 0.0056 27.1 8.6 58 821-878 30-87 (140)
407 PRK14473 F0F1 ATP synthase sub 31.2 2.4E+02 0.0052 28.2 8.6 58 821-878 33-90 (164)
408 PF07106 TBPIP: Tat binding pr 31.2 1.7E+02 0.0038 29.4 7.5 21 822-842 81-101 (169)
409 PF10234 Cluap1: Clusterin-ass 31.2 1.1E+02 0.0023 33.6 6.2 61 820-880 162-232 (267)
410 PRK14150 heat shock protein Gr 31.2 2.5E+02 0.0055 29.2 8.8 37 832-868 39-79 (193)
411 TIGR01242 26Sp45 26S proteasom 31.0 73 0.0016 36.3 5.3 35 832-866 4-38 (364)
412 PF10422 LRS4: Monopolin compl 30.9 16 0.00035 38.9 0.0 60 828-890 52-111 (249)
413 PRK00846 hypothetical protein; 30.9 91 0.002 27.5 4.5 52 840-898 12-63 (77)
414 KOG2264 Exostosin EXT1L [Signa 30.8 1.3E+02 0.0028 35.9 7.0 43 822-864 81-123 (907)
415 TIGR02977 phageshock_pspA phag 30.8 1.6E+02 0.0034 31.2 7.4 48 828-877 100-147 (219)
416 smart00706 TECPR Beta propelle 30.8 78 0.0017 22.9 3.6 25 571-595 8-33 (35)
417 PF02344 Myc-LZ: Myc leucine z 30.8 1.2E+02 0.0026 22.0 4.2 24 837-860 4-27 (32)
418 PRK10803 tol-pal system protei 30.5 90 0.002 34.1 5.7 43 824-866 58-100 (263)
419 PF13600 DUF4140: N-terminal d 30.5 79 0.0017 29.1 4.5 35 830-864 66-100 (104)
420 PF01025 GrpE: GrpE; InterPro 30.3 49 0.0011 33.1 3.3 30 823-852 21-50 (165)
421 PF09388 SpoOE-like: Spo0E lik 30.3 62 0.0013 25.2 3.2 38 832-869 2-39 (45)
422 COG3599 DivIVA Cell division i 30.3 1.7E+02 0.0037 30.9 7.4 67 829-895 32-104 (212)
423 KOG1003 Actin filament-coating 30.2 1.7E+02 0.0037 30.4 7.0 44 843-889 48-91 (205)
424 TIGR01035 hemA glutamyl-tRNA r 30.0 99 0.0022 36.1 6.3 75 823-897 313-399 (417)
425 PF05667 DUF812: Protein of un 29.9 1.6E+02 0.0034 36.2 8.0 41 832-872 326-366 (594)
426 KOG0639 Transducin-like enhanc 29.9 92 0.002 36.6 5.6 33 830-862 26-58 (705)
427 PF04841 Vps16_N: Vps16, N-ter 29.8 9.4E+02 0.02 27.9 17.9 70 296-373 81-153 (410)
428 KOG0245 Kinesin-like protein [ 29.8 1.3E+02 0.0028 38.5 7.2 39 826-864 360-421 (1221)
429 smart00340 HALZ homeobox assoc 29.6 65 0.0014 24.9 2.9 26 822-847 7-32 (44)
430 KOG0239 Kinesin (KAR3 subfamil 29.6 2.1E+02 0.0046 35.6 9.1 56 822-877 229-284 (670)
431 PLN00188 enhanced disease resi 29.6 1.7E+02 0.0038 36.2 8.2 94 26-125 9-113 (719)
432 KOG1962 B-cell receptor-associ 29.6 96 0.0021 32.8 5.3 57 825-881 149-208 (216)
433 COG4238 Murein lipoprotein [Ce 29.6 1.9E+02 0.0042 25.2 6.1 43 833-879 24-66 (78)
434 PTZ00419 valyl-tRNA synthetase 29.5 60 0.0013 42.4 4.7 55 841-895 929-990 (995)
435 PF05622 HOOK: HOOK protein; 29.5 18 0.00039 45.3 0.0 74 822-895 276-375 (713)
436 TIGR00414 serS seryl-tRNA synt 29.4 1.5E+02 0.0032 34.7 7.5 63 832-894 35-101 (418)
437 COG3122 Uncharacterized protei 29.3 4.9E+02 0.011 26.7 9.8 17 873-889 101-117 (215)
438 COG4741 Predicted secreted end 29.3 2.6E+02 0.0056 27.9 7.7 29 836-864 17-45 (175)
439 PLN02943 aminoacyl-tRNA ligase 29.3 70 0.0015 41.5 5.3 57 839-895 887-950 (958)
440 PF02183 HALZ: Homeobox associ 29.2 1.1E+02 0.0024 24.1 4.3 32 832-863 10-41 (45)
441 PF01286 XPA_N: XPA protein N- 29.2 32 0.00069 25.4 1.2 28 667-705 5-32 (34)
442 PF10552 ORF6C: ORF6C domain; 29.0 2.7E+02 0.0058 26.3 7.9 47 825-871 6-52 (116)
443 PF04012 PspA_IM30: PspA/IM30 29.0 2.1E+02 0.0045 30.1 8.0 41 837-877 47-87 (221)
444 PRK03947 prefoldin subunit alp 28.9 1.3E+02 0.0028 29.3 5.9 47 823-869 90-136 (140)
445 PF12711 Kinesin-relat_1: Kine 28.8 3.1E+02 0.0067 24.8 7.6 40 823-862 20-65 (86)
446 PF09755 DUF2046: Uncharacteri 28.8 2.4E+02 0.0053 31.4 8.5 50 823-872 23-72 (310)
447 cd01225 PH_Cool_Pix Cool (clon 28.8 3E+02 0.0066 26.0 7.9 80 31-121 23-109 (111)
448 smart00249 PHD PHD zinc finger 28.7 48 0.001 24.9 2.3 46 652-703 2-47 (47)
449 PF08614 ATG16: Autophagy prot 28.5 1.3E+02 0.0027 31.2 6.1 44 819-862 80-123 (194)
450 KOG2077 JNK/SAPK-associated pr 28.4 1.1E+02 0.0023 36.5 5.9 47 823-869 332-378 (832)
451 PF14662 CCDC155: Coiled-coil 28.2 4E+02 0.0087 27.7 9.3 27 822-848 31-57 (193)
452 PF05010 TACC: Transforming ac 28.2 2.4E+02 0.0053 29.7 8.1 52 819-877 103-154 (207)
453 PF10234 Cluap1: Clusterin-ass 28.1 1.2E+02 0.0026 33.2 5.9 25 828-852 163-187 (267)
454 COG4942 Membrane-bound metallo 27.9 2.8E+02 0.0062 32.3 9.1 23 861-883 233-255 (420)
455 PRK06568 F0F1 ATP synthase sub 27.8 3E+02 0.0064 27.7 8.2 55 822-876 30-84 (154)
456 PHA01754 hypothetical protein 27.8 68 0.0015 26.6 3.0 26 865-890 24-55 (69)
457 KOG0447 Dynamin-like GTP bindi 27.8 1.9E+02 0.004 34.7 7.6 67 821-890 220-286 (980)
458 PF13863 DUF4200: Domain of un 27.7 1.1E+02 0.0024 29.1 5.1 34 828-861 75-108 (126)
459 KOG4323 Polycomb-like PHD Zn-f 27.7 24 0.00052 41.2 0.6 58 652-711 171-229 (464)
460 PF08317 Spc7: Spc7 kinetochor 27.6 1.5E+02 0.0032 33.5 6.9 47 820-866 149-202 (325)
461 PF10805 DUF2730: Protein of u 27.5 2.9E+02 0.0062 25.8 7.7 60 833-892 34-95 (106)
462 PRK14474 F0F1 ATP synthase sub 27.4 2.4E+02 0.0053 30.5 8.2 57 822-878 31-87 (250)
463 PF12958 DUF3847: Protein of u 27.4 1.2E+02 0.0027 27.3 4.9 33 835-867 2-34 (86)
464 PF07321 YscO: Type III secret 27.4 3.6E+02 0.0078 27.0 8.7 60 831-890 64-126 (152)
465 PRK00888 ftsB cell division pr 27.4 88 0.0019 29.2 4.2 29 835-863 28-56 (105)
466 PF02996 Prefoldin: Prefoldin 27.3 1.2E+02 0.0026 28.5 5.2 36 825-860 82-117 (120)
467 PRK14139 heat shock protein Gr 27.2 3E+02 0.0065 28.5 8.4 40 822-861 41-80 (185)
468 KOG2164 Predicted E3 ubiquitin 27.2 20 0.00044 42.0 -0.1 50 651-709 188-237 (513)
469 PF07246 Phlebovirus_NSM: Phle 27.2 1.1E+02 0.0025 33.1 5.4 24 826-849 167-190 (264)
470 PRK14067 exodeoxyribonuclease 27.1 1.8E+02 0.0039 25.8 5.9 55 843-897 16-71 (80)
471 PF03357 Snf7: Snf7; InterPro 27.1 2.8E+02 0.006 27.5 8.2 28 839-866 6-33 (171)
472 TIGR02169 SMC_prok_A chromosom 27.1 1.9E+02 0.0042 38.0 9.0 7 90-96 24-30 (1164)
473 PF03245 Phage_lysis: Bacterio 27.1 3.4E+02 0.0073 26.2 8.3 58 838-895 4-61 (125)
474 TIGR01144 ATP_synt_b ATP synth 27.0 3.1E+02 0.0068 26.7 8.4 58 821-878 20-77 (147)
475 PF06103 DUF948: Bacterial pro 27.0 4.5E+02 0.0098 23.4 8.7 43 835-877 27-69 (90)
476 PF10073 DUF2312: Uncharacteri 26.8 1.9E+02 0.0042 25.3 5.7 47 841-887 4-50 (74)
477 smart00787 Spc7 Spc7 kinetocho 26.8 3.4E+02 0.0074 30.5 9.4 20 822-841 174-193 (312)
478 PRK02119 hypothetical protein; 26.8 1.3E+02 0.0029 26.1 4.9 32 826-857 22-53 (73)
479 PRK14162 heat shock protein Gr 26.7 3.2E+02 0.0069 28.5 8.5 39 821-859 47-85 (194)
480 PF07334 IFP_35_N: Interferon- 26.7 71 0.0015 28.1 3.1 21 822-842 2-22 (76)
481 PF05531 NPV_P10: Nucleopolyhe 26.6 2.3E+02 0.0051 24.9 6.3 37 830-866 21-60 (75)
482 PRK10698 phage shock protein P 26.5 2.1E+02 0.0046 30.4 7.5 44 832-877 104-147 (222)
483 PF07989 Microtub_assoc: Micro 26.5 2.3E+02 0.0049 24.9 6.3 26 838-863 47-72 (75)
484 PRK00846 hypothetical protein; 26.5 3.6E+02 0.0077 23.9 7.4 34 827-860 27-60 (77)
485 COG1938 Archaeal enzymes of AT 26.5 1.1E+02 0.0024 33.0 5.2 41 825-870 193-233 (244)
486 TIGR00293 prefoldin, archaeal 26.4 1.5E+02 0.0031 28.3 5.7 42 836-888 1-42 (126)
487 PF06730 FAM92: FAM92 protein; 26.4 3.3E+02 0.0072 28.9 8.6 66 817-885 105-184 (219)
488 PRK00106 hypothetical protein; 26.4 1.5E+02 0.0033 35.8 6.9 66 823-893 118-183 (535)
489 cd00890 Prefoldin Prefoldin is 26.4 1.5E+02 0.0032 28.1 5.8 40 827-866 87-126 (129)
490 KOG4603 TBP-1 interacting prot 26.3 5.2E+02 0.011 26.3 9.4 6 897-902 196-201 (201)
491 COG4467 Regulator of replicati 26.3 1.1E+02 0.0023 28.6 4.4 44 823-866 11-54 (114)
492 TIGR02977 phageshock_pspA phag 26.2 4.2E+02 0.0092 27.9 9.7 41 836-876 47-87 (219)
493 KOG0993 Rab5 GTPase effector R 26.2 3.7 8.1E-05 46.1 -5.9 63 643-709 462-526 (542)
494 KOG0971 Microtubule-associated 26.1 1.6E+02 0.0035 37.1 7.0 48 821-868 397-444 (1243)
495 PF12732 YtxH: YtxH-like prote 26.1 2.6E+02 0.0057 24.0 6.7 26 827-852 26-51 (74)
496 PF05911 DUF869: Plant protein 26.0 2.2E+02 0.0047 36.0 8.4 15 879-893 655-669 (769)
497 TIGR01063 gyrA DNA gyrase, A s 25.9 1.5E+03 0.032 29.0 20.5 212 355-599 544-770 (800)
498 PRK13428 F0F1 ATP synthase sub 25.9 2.6E+02 0.0057 33.0 8.8 56 822-877 27-82 (445)
499 smart00338 BRLZ basic region l 25.8 1.3E+02 0.0028 25.2 4.6 39 819-857 25-63 (65)
500 PRK06569 F0F1 ATP synthase sub 25.8 4E+02 0.0086 26.8 8.7 78 819-896 33-116 (155)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.5e-46 Score=410.94 Aligned_cols=364 Identities=26% Similarity=0.467 Sum_probs=296.2
Q ss_pred eeccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEeccc--CCCCeEEEEecCCEEEEEEcCCcEEEEeCCCC
Q 002602 248 DFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLEST--VVLDAQSIACGSKHAVLVTKQGQIFSWGEGSG 325 (902)
Q Consensus 248 ~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~ 325 (902)
....-.+||+||.|. .++||.|.+. .....|...... ....|++++||..|+++|+.||.||+||.|..
T Consensus 63 ~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 63 LLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 466889999999998 9999999873 335777777665 45789999999999999999999999999999
Q ss_pred CCCCCCCC----------------cccccceEeec----CCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCC
Q 002602 326 GKLGHGVE----------------ADVSYPKLIDA----LNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQV 385 (902)
Q Consensus 326 GQLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g 385 (902)
|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+ ..+.++.+
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~g 211 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQG 211 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--cccccccc
Confidence 99998661 12467888875 2234799999999999999999999999998 45555555
Q ss_pred C--Ccc----eeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCCCCcccccccccccC-eEE
Q 002602 386 S--EIS----HWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKEL-KTV 458 (902)
Q Consensus 386 ~--~~~----~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~-~i~ 458 (902)
. ... .++|..+. ...|+++++|..|.++|+++|++|+||+|.+||||....+....+..+..+... .|.
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 2 222 24555544 457999999999999999999999999999999999877776666666543332 368
Q ss_pred EEEecCceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCCCCC----CCeeeeEEeeecCCCCeEEeecCccEEEEE
Q 002602 459 MASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDA----EPRVVPLCVKVSDDISFCKVACGHSITIAL 534 (902)
Q Consensus 459 ~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~----~~~~~P~~v~~l~~~~I~~Ia~G~~htlaL 534 (902)
.|+||.+|++||. .+|++|+||.|.+||||.+.. .....|.....+.+..|..|++|..|+++|
T Consensus 288 ~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L 355 (476)
T COG5184 288 YVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLIL 355 (476)
T ss_pred hcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEE
Confidence 8999999999998 699999999999999999821 123456666667778899999999999999
Q ss_pred ecCCcEEEEecCCCCCCCCCCCCC---ccceeeecCCCCCCEEEEEecCCEEEEEEcCCcEEEEeCCCCCCcCCCCC-CC
Q 002602 535 TATGQVFSMGSADYGQLGSPGSTG---KFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDN-EN 610 (902)
Q Consensus 535 t~~G~Vy~wG~n~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G~VytWG~n~~GQLG~g~~-~~ 610 (902)
..+|.||+||.+..+|||.+.... ..|+.+. ....+++|+||..|.++.+.+|+||.||.|++|+||.|+. +.
T Consensus 356 ~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~ 432 (476)
T COG5184 356 RKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEAD 432 (476)
T ss_pred ecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhh
Confidence 999999999999999999887332 1232222 2357999999999999999999999999999999999985 45
Q ss_pred ceeeEEecc--ccCccEEEEecCCCcceeeeec
Q 002602 611 KQTPTLVEA--LRDKQVKSVVCGSNFTAAICLH 641 (902)
Q Consensus 611 ~~~P~~V~~--l~~~~V~~VacG~~hT~aI~~~ 641 (902)
...|+++.. +.+..++..-||.++++..-.+
T Consensus 433 ~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 433 VLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred ccccccccccccCCCceEEeccCcceEEEecch
Confidence 567888874 6777888888888887766544
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.3e-40 Score=363.90 Aligned_cols=318 Identities=27% Similarity=0.489 Sum_probs=261.2
Q ss_pred cCCEEEEEEcCCcEEEEeCCCCCCCCCCCCccc-ccceEeecC--CCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCC
Q 002602 304 GSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADV-SYPKLIDAL--NGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLG 380 (902)
Q Consensus 304 G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~-~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~G 380 (902)
-..|...++.-+.||+||.|..+|||.+.+... ..|+++... +...|++++||..|+++|+.||.||+||.| ..|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G 134 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDG 134 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--ccc
Confidence 346677889999999999999999999987765 889998876 667899999999999999999999999999 789
Q ss_pred CCCCCCC----------------cceeeeeeecc---CCCCccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCC
Q 002602 381 LLGQVSE----------------ISHWIPRKVSG---QMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRS 441 (902)
Q Consensus 381 qLG~g~~----------------~~~~~P~~v~~---~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~ 441 (902)
+||.... .....|.+|+. .....+|++++||++++++|+++|.||.||.+..+.++.+...
T Consensus 135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~ 214 (476)
T COG5184 135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK 214 (476)
T ss_pred ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence 9997761 12457777765 1224489999999999999999999999999999998888443
Q ss_pred CCc------ccccccccccCeEEEEEecCceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeee
Q 002602 442 STS------VPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV 515 (902)
Q Consensus 442 ~~~------~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~ 515 (902)
... .|-.+. ...|+++++|..|.++|+ ..|++|+||+|..||||....+....+..+..
T Consensus 215 ~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt------------~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~ 279 (476)
T COG5184 215 NSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALT------------NEGKVYGWGSNQKGQLGRPTSERLKLVVLVGD 279 (476)
T ss_pred ccccceeeeeeeecC---chheeeeccCCceEEEEe------------cCCcEEEecCCcccccCCchhhhcccccccCC
Confidence 332 333333 457999999999999998 79999999999999999988877665555543
Q ss_pred cC-CCCeEEeecCccEEEEEecCCcEEEEecCCCCCCCCCCCCCccceee-----ecCCCCCCEEEEEecCCEEEEEEcC
Q 002602 516 SD-DISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRI-----EGNIKHRYIEDIACGSYHIAVVSSK 589 (902)
Q Consensus 516 l~-~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v-----~~~l~~~~V~~Ia~G~~hs~aLT~~ 589 (902)
+. -..|..|+||.+|++||+++|+||+||.|.+||||.+ .+...+... ...+.+..|..|++|..|+++|..+
T Consensus 280 ~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~ 358 (476)
T COG5184 280 PFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKD 358 (476)
T ss_pred hhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccccCCCceEEEEecCcceEEEEecC
Confidence 32 2347899999999999999999999999999999998 443322221 1234556699999999999999999
Q ss_pred CcEEEEeCCCCCCcCCCC--CCCceeeEEeccccCccEEEEecCCCcceeeeec
Q 002602 590 SEVYTWGKGANGQLGHGD--NENKQTPTLVEALRDKQVKSVVCGSNFTAAICLH 641 (902)
Q Consensus 590 G~VytWG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~V~~VacG~~hT~aI~~~ 641 (902)
|.||+||++..||||..+ ......|+++... .++.+|+||..|+++.+..
T Consensus 359 G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~ 410 (476)
T COG5184 359 GTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDD 410 (476)
T ss_pred ceEEEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccC
Confidence 999999999999999998 5555666666533 3699999999999998754
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.6e-40 Score=342.36 Aligned_cols=362 Identities=25% Similarity=0.446 Sum_probs=301.0
Q ss_pred cCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccCCCCeEEEEecC--CEEEEEEcCCcEEEEeCCCCCCC
Q 002602 251 GLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGS--KHAVLVTKQGQIFSWGEGSGGKL 328 (902)
Q Consensus 251 ~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~~~~I~~Ia~G~--~hs~~Lt~dG~Vy~wG~N~~GQL 328 (902)
.-|++...|... ..+.|--+.. .......|.++.-+...+|+-|+.|- .|+++|+-+|+.|.||.|..|||
T Consensus 18 ~~g~ml~~g~v~-wd~tgkRd~~------~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQL 90 (443)
T KOG1427|consen 18 KGGEMLFCGAVA-WDITGKRDGA------MEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQL 90 (443)
T ss_pred CCccEEEeccch-hhhhcccccc------cccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCcc
Confidence 567788888776 5555543321 11356788888888888999998765 79999999999999999999999
Q ss_pred CCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCcceeeeeeeccCCCCccEEEE
Q 002602 329 GHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSI 408 (902)
Q Consensus 329 G~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~V 408 (902)
|+++......|+.|..|...+|++.+||++|+++||++|.||.+|.| .+||||.++.........++ ..-+..|+.|
T Consensus 91 GhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~-~~~~~~v~~v 167 (443)
T KOG1427|consen 91 GHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLP-CVVSDEVTNV 167 (443)
T ss_pred CccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCc-cccCccceee
Confidence 99988889999999999999999999999999999999999999999 88999999864422111111 1234579999
Q ss_pred eecCCcceeeeeCCeEEEeccCCCCCCCCCCC--------------CCCcccccccccccCeEEEEEecCceeEEEEeec
Q 002602 409 CCGPWHTAAITSAGKLFTFGDGTFGALGHGDR--------------SSTSVPREVETLKELKTVMASCGVWHTAAIVEVA 474 (902)
Q Consensus 409 scG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~--------------~~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~ 474 (902)
+||..+++.|+..+.|.++|...||||||+.. +....|..|..+.+..|++++||.+|++++.
T Consensus 168 ~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd--- 244 (443)
T KOG1427|consen 168 ACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD--- 244 (443)
T ss_pred ccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec---
Confidence 99999999999999999999999999999843 2334577788889999999999999999997
Q ss_pred ccccCCcccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeeecC--CCCeEEeecCccEEEEEecCCcEEEEecCCCCCCC
Q 002602 475 GKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSD--DISFCKVACGHSITIALTATGQVFSMGSADYGQLG 552 (902)
Q Consensus 475 ~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~--~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG 552 (902)
+++.||+||.+-+|+|||.......+|..++.+. +..-.++.||+..++++.+-|.+|.||.+..
T Consensus 245 ---------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~---- 311 (443)
T KOG1427|consen 245 ---------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN---- 311 (443)
T ss_pred ---------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc----
Confidence 7999999999999999999998888888887654 3346789999999999999999999997653
Q ss_pred CCCCCCccceeeecCCCCCCEEEEEecCCEEEEEEcCCcEEEEeCCCCCCcCCCC--CCCceeeEEeccccCccEEEEec
Q 002602 553 SPGSTGKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGD--NENKQTPTLVEALRDKQVKSVVC 630 (902)
Q Consensus 553 ~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G~VytWG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~V~~Vac 630 (902)
...+..+|..+.+ +.+.++..|.||..|.++ ..|..+..||...+|.++-|. ......|..|+.|.+.+|..|+|
T Consensus 312 -~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~Vam 388 (443)
T KOG1427|consen 312 -NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAM 388 (443)
T ss_pred -CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccceee
Confidence 2334556766664 677889999999999865 557789999999988776554 34456799999999999999999
Q ss_pred CCCcceeeeec
Q 002602 631 GSNFTAAICLH 641 (902)
Q Consensus 631 G~~hT~aI~~~ 641 (902)
|..||++|+..
T Consensus 389 GysHs~vivd~ 399 (443)
T KOG1427|consen 389 GYSHSMVIVDR 399 (443)
T ss_pred ccceEEEEEcc
Confidence 99999999864
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.2e-36 Score=310.67 Aligned_cols=309 Identities=24% Similarity=0.414 Sum_probs=257.2
Q ss_pred EeeccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccCCCCeEEEEecCCEEEEEEcCCcEEEEeCCCCC
Q 002602 247 EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGG 326 (902)
Q Consensus 247 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~G 326 (902)
..|+-+|+.|.||.|. .||||+++. ..+..|+.|+.+...+|++.+||++|+++||++|+||.||+|.+|
T Consensus 71 vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~G 140 (443)
T KOG1427|consen 71 VLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYG 140 (443)
T ss_pred EEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccc
Confidence 5799999999999999 999999975 466789999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc-cccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCcce--------------e
Q 002602 327 KLGHGVEAD-VSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISH--------------W 391 (902)
Q Consensus 327 QLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~--------------~ 391 (902)
|||++.... +..|.++.. .+..|..|+||..+++.|+..+.+.++|.- .|||||++.+... .
T Consensus 141 QlGlgn~~~~v~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~~p 217 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEAQP 217 (443)
T ss_pred cccccccccccccCCCccc-cCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeecCC
Confidence 999998653 444444433 345799999999999999999999999999 8899999987432 2
Q ss_pred eeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCCCCcccccccccc--cCeEEEEEecCceeEE
Q 002602 392 IPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLK--ELKTVMASCGVWHTAA 469 (902)
Q Consensus 392 ~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~--~~~i~~VacG~~hs~a 469 (902)
.|..|. ++++.+|++++||.+|+++++++++||+||.+.||.|||....+...|+.+..+. +.--..+.||+..++.
T Consensus 218 r~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~ 296 (443)
T KOG1427|consen 218 RPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLN 296 (443)
T ss_pred Cccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccccee
Confidence 233333 5789999999999999999999999999999999999999999999999988653 3445678899999998
Q ss_pred EEeecccccCCcccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeeecCCCCeEEeecCccEEEEEecCCcEEEEecCCCC
Q 002602 470 IVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYG 549 (902)
Q Consensus 470 Lte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~G 549 (902)
+. .-|.||.||.+.. +-+....|.++..+.+.++..+.||..|.+ +..+.....||...+|
T Consensus 297 v~------------e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g 357 (443)
T KOG1427|consen 297 VA------------EGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYG 357 (443)
T ss_pred ec------------ccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee-eccccccccccccccc
Confidence 87 4899999998763 223456677788889999999999999865 5567789999988887
Q ss_pred CCCC-CCC--CCccceeeecCCCCCCEEEEEecCCEEEEEEcC
Q 002602 550 QLGS-PGS--TGKFPTRIEGNIKHRYIEDIACGSYHIAVVSSK 589 (902)
Q Consensus 550 QLG~-~~~--~~~~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~ 589 (902)
.++- ++. ....|..+. .+.+-.|.+|++|..|+++|..+
T Consensus 358 ~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 358 ELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 6643 333 234576665 46778899999999999999754
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=3.7e-26 Score=260.37 Aligned_cols=305 Identities=20% Similarity=0.350 Sum_probs=232.5
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCCCCcccccceEeecCC--CCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCC
Q 002602 309 VLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALN--GSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVS 386 (902)
Q Consensus 309 ~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~ 386 (902)
.+++...+||+||.|.+..||+|.......|.+|..+. +.-+.+|+.+.+|++++++.|+||++|.+ ..|.||+|.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCc
Confidence 35666789999999999999999999999999999774 44588999999999999999999999999 789999999
Q ss_pred CcceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCC-CCCcccccccc--cccC-eEEEEEe
Q 002602 387 EISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDR-SSTSVPREVET--LKEL-KTVMASC 462 (902)
Q Consensus 387 ~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~-~~~~~P~~V~~--l~~~-~i~~Vac 462 (902)
......|++|++ +.+.+|.+|++...|+++||..|-||+||.|.++|||..+. .....|.+|.. +++. .|+-|++
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaA 292 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAA 292 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhc
Confidence 999999999998 77889999999999999999999999999999999998754 34455666642 2333 6899999
Q ss_pred cCceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCCCCCCC-eeeeEEeeecCCCCeEEeecCccEEEEEecCCcEE
Q 002602 463 GVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEP-RVVPLCVKVSDDISFCKVACGHSITIALTATGQVF 541 (902)
Q Consensus 463 G~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~-~~~P~~v~~l~~~~I~~Ia~G~~htlaLt~~G~Vy 541 (902)
|..|+++.+ +..||+||.|. ||||..+..+ ...|..+ ......|.-|+|....|++++++|.+|
T Consensus 293 g~~hsVawt-------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l-~~~~~~v~~v~a~~~ATVc~~~~~~i~ 357 (1267)
T KOG0783|consen 293 GKSHSVAWT-------------DTDVYSWGLNN-GQLGISDNISVVTTPRRL-AGLLSPVIHVVATTRATVCLLQNNSII 357 (1267)
T ss_pred ccceeeeee-------------cceEEEecccC-ceecCCCCCceeecchhh-cccccceEEEEecCccEEEEecCCcEE
Confidence 999999996 88999999975 9999877654 4456444 234567999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCccceeee-cCC--CCCCEEEEEecCCEEEEEEcCCcEEEEeCCCCCCcCCCCCCCceeeEEec
Q 002602 542 SMGSADYGQLGSPGSTGKFPTRIE-GNI--KHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVE 618 (902)
Q Consensus 542 ~wG~n~~GQLG~~~~~~~~P~~v~-~~l--~~~~V~~Ia~G~~hs~aLT~~G~VytWG~n~~GQLG~g~~~~~~~P~~V~ 618 (902)
++-.-..-.+-......+ ...|. +++ .-..+.+..+...-.++||+-|+||.|-.+.. ++ +.-...|..+-
T Consensus 358 ~~ady~~~k~~~n~~~lk-s~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns-~~----~~c~ftp~r~~ 431 (1267)
T KOG0783|consen 358 AFADYNQVKLPFNVDFLK-SLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS-TR----TSCKFTPLRIF 431 (1267)
T ss_pred EEecccceecCcchhccc-eeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC-ce----eeeecccceee
Confidence 987544333322111111 11222 122 12346666777777899999999999986431 10 11122344332
Q ss_pred cccCccEEEEecCCCcceeeeecc
Q 002602 619 ALRDKQVKSVVCGSNFTAAICLHK 642 (902)
Q Consensus 619 ~l~~~~V~~VacG~~hT~aI~~~~ 642 (902)
.|.+|+--.+.-++++.++
T Consensus 432 -----~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 432 -----EISDIAWTANSLILCTRDG 450 (1267)
T ss_pred -----ehhhhhhccceEEEEecCc
Confidence 4556776666666666543
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=7.6e-26 Score=257.86 Aligned_cols=307 Identities=22% Similarity=0.347 Sum_probs=230.4
Q ss_pred EeeccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccC--CCCeEEEEecCCEEEEEEcCCcEEEEeCCC
Q 002602 247 EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTV--VLDAQSIACGSKHAVLVTKQGQIFSWGEGS 324 (902)
Q Consensus 247 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~--~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 324 (902)
.++|...|||+||.|. +..||.|.. .....|.++..+. ++=+.+|+.+..|++++++.|+||++|.+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 4578889999999999 999999985 3445666665443 445778999999999999999999999999
Q ss_pred CCCCCCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCc-ceeeeeeeccC-CCC
Q 002602 325 GGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEI-SHWIPRKVSGQ-MEG 402 (902)
Q Consensus 325 ~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~-~~~~P~~v~~~-l~~ 402 (902)
+|+||+|+......|++|+.|.+.+|.+|++...|+++||++|-||+||.| ..+|||..+.. ....|.+|... +.+
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcc
Confidence 999999988888999999999999999999999999999999999999999 77999987664 33445554321 223
Q ss_pred c-cEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCC-CCcccccccccccCeEEEEEecCceeEEEEeecccccCC
Q 002602 403 L-QISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRS-STSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGS 480 (902)
Q Consensus 403 ~-~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~-~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~ 480 (902)
. .|+-|++|..|+++.|+. .||+||.|. ||||..+.. .+..|+.+..+ ...+..|+|...-|++++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~--------- 351 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLL--------- 351 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEe---------
Confidence 3 799999999999999976 699999985 999987654 45678766433 347999999999999998
Q ss_pred cccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeee----cCCCCeEEeecCccEEEEEecCCcEEEEecCCCCCCCCCCC
Q 002602 481 NGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKV----SDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGS 556 (902)
Q Consensus 481 ~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~----l~~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~ 556 (902)
.++.+|++-+-..-.+.. +.....-..|.. +.-.++.+..+.....++||+.|+||.|-++....- .
T Consensus 352 ---~~~~i~~~ady~~~k~~~--n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~----~ 422 (1267)
T KOG0783|consen 352 ---QNNSIIAFADYNQVKLPF--NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT----S 422 (1267)
T ss_pred ---cCCcEEEEecccceecCc--chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee----e
Confidence 588888876533222211 111111111211 111345666777778899999999999996642111 0
Q ss_pred CCccceeeecCCCCCCEEEEEecCCEEEEEEcCCcE
Q 002602 557 TGKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEV 592 (902)
Q Consensus 557 ~~~~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G~V 592 (902)
-...|.++ ..|.+|+--.+..+++|.||.+
T Consensus 423 c~ftp~r~------~~isdIa~~~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 423 CKFTPLRI------FEISDIAWTANSLILCTRDGCW 452 (1267)
T ss_pred eeccccee------eehhhhhhccceEEEEecCcce
Confidence 01123332 3467888888999999999943
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.9e-20 Score=214.31 Aligned_cols=345 Identities=23% Similarity=0.319 Sum_probs=219.0
Q ss_pred eccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccCCCCeEEEEecCCEEEEEE--cCCcEEEEeCCCCC
Q 002602 249 FDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVT--KQGQIFSWGEGSGG 326 (902)
Q Consensus 249 l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~~~~I~~Ia~G~~hs~~Lt--~dG~Vy~wG~N~~G 326 (902)
-..+|+||--|.+...|..-.|.. =....+ ..+|++|+.|-....++. .+|-++.-|...
T Consensus 494 qa~sGKvYYaGn~t~~Gl~e~G~n--------WmEL~l--------~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k-- 555 (3738)
T KOG1428|consen 494 QARSGKVYYAGNGTRFGLFETGNN--------WMELCL--------PEPIVQISVGIDTIMFRSGAGHGWIASVDDKK-- 555 (3738)
T ss_pred hhcCccEEEecCccEEeEEccCCc--------eEEecC--------CCceEEEEeccchhheeeccCcceEEeccCcc--
Confidence 458999999998763443333321 011112 247899999987666654 445555544321
Q ss_pred CCCCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCcceeeeeeeccCCCCccEE
Q 002602 327 KLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQIS 406 (902)
Q Consensus 327 QLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~ 406 (902)
+.| .-.++......+|+.|.+...---++.++|++|+.|...- .......+...+++.-|.
T Consensus 556 ~~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm-----------~~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 556 RNG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM-----------RVNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred ccc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-----------EecchHHHhhccccceee
Confidence 111 1111222233467777554444457889999999986521 111111222347788899
Q ss_pred EEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCCC-Ccccccc-------------cccccCeEEEEEecCceeEEEEe
Q 002602 407 SICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSS-TSVPREV-------------ETLKELKTVMASCGVWHTAAIVE 472 (902)
Q Consensus 407 ~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~-~~~P~~V-------------~~l~~~~i~~VacG~~hs~aLte 472 (902)
+++-|..|.++++.+|.||+||-|..+|+|.-.... ...|+.- ..+.+...+...||.-...-+.
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva- 695 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA- 695 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc-
Confidence 999999999999999999999999999999753322 1222211 1122223333344432221111
Q ss_pred ecccccCCcccCCCcEEEecCCCCCCCCCC--------CC-------------------CCeeeeEEeee---cCCCCeE
Q 002602 473 VAGKTSGSNGLSSKKLFTWGDGAEGQLGHG--------DA-------------------EPRVVPLCVKV---SDDISFC 522 (902)
Q Consensus 473 ~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g--------~~-------------------~~~~~P~~v~~---l~~~~I~ 522 (902)
........|.+-.+|.++.+-+--| .. ...+-|..|.. .-+.++.
T Consensus 696 -----C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~ 770 (3738)
T KOG1428|consen 696 -----CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVS 770 (3738)
T ss_pred -----cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEE
Confidence 1122224677777777766543211 00 01123333332 2346799
Q ss_pred EeecCccEEEEEecCCcEEEEecCCCCCCCCCCCCCc-cceeeecCCCCCCEEEEEecCCEEEEEEcCCcEEEEeCCCCC
Q 002602 523 KVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANG 601 (902)
Q Consensus 523 ~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~-~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G~VytWG~n~~G 601 (902)
+|+||..|+++|.+|++||+||+|-+||||.++...+ .|+.|.. +.+..|++|++|.+|++++..||.||+||.=..|
T Consensus 771 sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KG 849 (3738)
T KOG1428|consen 771 SVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKG 849 (3738)
T ss_pred EEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccCc
Confidence 9999999999999999999999999999999987654 6888874 5667899999999999999999999999999999
Q ss_pred CcCCCCCCC---ceeeEEecccc---CccEEEEecCCCccee
Q 002602 602 QLGHGDNEN---KQTPTLVEALR---DKQVKSVVCGSNFTAA 637 (902)
Q Consensus 602 QLG~g~~~~---~~~P~~V~~l~---~~~V~~VacG~~hT~a 637 (902)
|||..-.+. ...|.+|..+. +.....|-+.++.+++
T Consensus 850 QL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 850 QLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred cccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 999764332 23577777553 3345566666655543
No 8
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=3.6e-20 Score=175.37 Aligned_cols=104 Identities=26% Similarity=0.513 Sum_probs=94.7
Q ss_pred HHHHHhcCceEEEEecCCCceeEEEEEeCCCCeEEEecCC--cceeEecceeeeeecccCChhhhcCCCC----CCCCCe
Q 002602 17 AVRVLKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGK--EEKQLKLSHVSRIIPGQRTAVFQRYPQP----EKEYQS 90 (902)
Q Consensus 17 ~l~~L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~--~~~~i~l~~I~eIr~G~~t~~f~~~~~~----~~~~~~ 90 (902)
++.+|++|+.|+|+.++++++.|+|+|+++...|.|.+.+ ..+.|+|++|+|||.|+.++.|++.... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5689999999999988889999999999999999999855 5778999999999999999999887543 588999
Q ss_pred EEEEEcC----ceeeEEeCCHHHHHHHHHHHHHH
Q 002602 91 FSLIYRN----RSLDLICKDKDEAELWFTALRAL 120 (902)
Q Consensus 91 FSiiy~~----rtLDLva~~~~e~~~Wv~gL~~L 120 (902)
|||||+. ++|||||+|+++|+.|++||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 9999965 69999999999999999999986
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-18 Score=201.22 Aligned_cols=264 Identities=27% Similarity=0.409 Sum_probs=177.4
Q ss_pred CCeEEEEecCCEEEEEEcCCcEEEEeCCCCCCCCCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCC
Q 002602 296 LDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 296 ~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n 375 (902)
.+|+.+.....---++.++|++|..|..... . ...-..+..|++.-|.+++.|..|.++|+.+|+||+||-|
T Consensus 569 rKIv~v~~s~~VY~~vSenGkifM~G~~tm~-------~-n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlN 640 (3738)
T KOG1428|consen 569 RKIVHVCASGHVYGYVSENGKIFMGGLHTMR-------V-NVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLN 640 (3738)
T ss_pred ceeEEEeeeeEEEEEEccCCeEEeecceeEE-------e-cchHHHhhccccceeehhhccccceeEEEeCCeEEEEecC
Confidence 4566665544444678999999999963210 0 0123456678888899999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceeeeeeeccC-------------CCCccEEEEeecCCcc---eee---eeCCeEEEeccCCCCCCC
Q 002602 376 IHNLGLLGQVSEISHWIPRKVSGQ-------------MEGLQISSICCGPWHT---AAI---TSAGKLFTFGDGTFGALG 436 (902)
Q Consensus 376 ~~~~GqLG~g~~~~~~~P~~v~~~-------------l~~~~I~~VscG~~hs---~aL---t~~G~Vy~wG~n~~GQLG 436 (902)
+.+|.|.-.........+..+. +....-+-..||.-.. ... .-.|.+..+|.+..+-+-
T Consensus 641 --N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~ 718 (3738)
T KOG1428|consen 641 --NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLR 718 (3738)
T ss_pred --CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCccccee
Confidence 8899997544332211111110 0011111111222111 111 113555556655433321
Q ss_pred CC--------------------C-------CCCCccccccc---ccccCeEEEEEecCceeEEEEeecccccCCcccCCC
Q 002602 437 HG--------------------D-------RSSTSVPREVE---TLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSK 486 (902)
Q Consensus 437 ~g--------------------~-------~~~~~~P~~V~---~l~~~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G 486 (902)
-| . ......|..|. ..-++++.+|+||..|++.|. .++
T Consensus 719 CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~------------sd~ 786 (3738)
T KOG1428|consen 719 CGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA------------SDR 786 (3738)
T ss_pred ccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe------------cCC
Confidence 11 0 01222344443 233568999999999999998 699
Q ss_pred cEEEecCCCCCCCCCCCCCCeeeeEEeeecCCCCeEEeecCccEEEEEecCCcEEEEecCCCCCCCCCCCCCc----cce
Q 002602 487 KLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK----FPT 562 (902)
Q Consensus 487 ~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~----~P~ 562 (902)
+||++|.|.+||||+||...+..|+.|..+.+..+++|++|.+||+++..||.||+||.-..||||.|--+.. .|.
T Consensus 787 ~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe 866 (3738)
T KOG1428|consen 787 RVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPE 866 (3738)
T ss_pred cEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765432 455
Q ss_pred eeecCC--CCCCEEEEEecCC
Q 002602 563 RIEGNI--KHRYIEDIACGSY 581 (902)
Q Consensus 563 ~v~~~l--~~~~V~~Ia~G~~ 581 (902)
++.+.- .+.+...|.+-++
T Consensus 867 ~v~~~G~~f~~~A~WIGAdGD 887 (3738)
T KOG1428|consen 867 KVSGFGPGFNAFAGWIGADGD 887 (3738)
T ss_pred cCCCCCccccccceeeccCCC
Confidence 554321 2234445554433
No 10
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.72 E-value=3.4e-17 Score=156.62 Aligned_cols=107 Identities=28% Similarity=0.518 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCceEEEEecCC------CceeEEEEEeCCCCeEEEecCC---------cceeEecceeeeeecccCChhh
Q 002602 14 TEQAVRVLKKGTYLLKYGRRG------KPKFCPFRLSSDEKLLIWYAGK---------EEKQLKLSHVSRIIPGQRTAVF 78 (902)
Q Consensus 14 ~~~~l~~L~~Gt~l~K~~r~~------kp~~r~f~l~~d~~~l~W~~~~---------~~~~i~l~~I~eIr~G~~t~~f 78 (902)
+++||..|+.|+.|+||.|++ +||.|+|+|++++..|.|.+.+ +.+.+.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 688999999999999999988 9999999999999999999833 2356999999999999999888
Q ss_pred hcCCCCCCCCCeEEEEEcCceeeEEeCCHHHHHHHHHHHHHHHHc
Q 002602 79 QRYPQPEKEYQSFSLIYRNRSLDLICKDKDEAELWFTALRALISE 123 (902)
Q Consensus 79 ~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~ 123 (902)
. .+.....||.|+.++|+|||+|++.+++++|+.||++|+.+
T Consensus 82 ~---~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~~ 123 (123)
T PF12814_consen 82 L---KKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQK 123 (123)
T ss_pred c---cccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhhC
Confidence 7 22224556666667899999999999999999999999864
No 11
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.23 E-value=2.7e-12 Score=149.81 Aligned_cols=117 Identities=24% Similarity=0.489 Sum_probs=104.8
Q ss_pred ccHHHHHHHHhcCceEEEEecCCCceeEEEEEeCCCCeEEEecCC---cceeEecceeeeeecccCChhhhcCCCCCCCC
Q 002602 12 RDTEQAVRVLKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGK---EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEY 88 (902)
Q Consensus 12 ~~~~~~l~~L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~ 88 (902)
-..++++..|++|+.|.|++..++.+.|+|.|+.|...+.|.... .+..+.|++|.+||.|++|+.+++..+...++
T Consensus 8 ~~~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~ 87 (746)
T KOG0169|consen 8 SNDDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPED 87 (746)
T ss_pred cccHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcc
Confidence 356889999999999999999999999999999997777776522 23349999999999999999999988889999
Q ss_pred CeEEEEEcC--ceeeEEeCCHHHHHHHHHHHHHHHHcccccC
Q 002602 89 QSFSLIYRN--RSLDLICKDKDEAELWFTALRALISEDNRCK 128 (902)
Q Consensus 89 ~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~~ 128 (902)
+||||+|++ ++|||+|.++++++.||+||++|++...+.+
T Consensus 88 ~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~ 129 (746)
T KOG0169|consen 88 RCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMR 129 (746)
T ss_pred eeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhh
Confidence 999999987 7999999999999999999999999887554
No 12
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.17 E-value=3.6e-12 Score=146.68 Aligned_cols=127 Identities=21% Similarity=0.456 Sum_probs=114.7
Q ss_pred CccccccccccccHHHHHHHHhcCceEEEE-ecCCCceeEEEEEeCCCCeEEEec--CCcceeEecceeeeeecccCChh
Q 002602 1 MASFQQNILVERDTEQAVRVLKKGTYLLKY-GRRGKPKFCPFRLSSDEKLLIWYA--GKEEKQLKLSHVSRIIPGQRTAV 77 (902)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~L~~Gt~l~K~-~r~~kp~~r~f~l~~d~~~l~W~~--~~~~~~i~l~~I~eIr~G~~t~~ 77 (902)
|.++++.+|.+.+..+.+.+|..|+.|.++ +++.+|.+|.|.+-.+++++.|.. .+-++.|+|.+|+|||+|+.+..
T Consensus 1 ~~~~n~~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skd 80 (1267)
T KOG1264|consen 1 STCVNVDAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKD 80 (1267)
T ss_pred CCcccCCCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchh
Confidence 566777789999999999999999999999 555789999999999999999987 56789999999999999999999
Q ss_pred hhcCCCC--CCCCCeEEEEEcC----ceeeEEeCCHHHHHHHHHHHHHHHHccccc
Q 002602 78 FQRYPQP--EKEYQSFSLIYRN----RSLDLICKDKDEAELWFTALRALISEDNRC 127 (902)
Q Consensus 78 f~~~~~~--~~~~~~FSiiy~~----rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~ 127 (902)
|+||++. .++++||.|.|+. |||.|+|.+.+|++.|+.||+.|+...-..
T Consensus 81 fdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl~a 136 (1267)
T KOG1264|consen 81 FDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTLNA 136 (1267)
T ss_pred HHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhccC
Confidence 9999764 8889999999988 999999999999999999999999876443
No 13
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.16 E-value=2.9e-11 Score=97.19 Aligned_cols=50 Identities=44% Similarity=0.780 Sum_probs=47.8
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCceeeEEeccccCccEEEEecCCCcceee
Q 002602 589 KSEVYTWGKGANGQLG-HGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638 (902)
Q Consensus 589 ~G~VytWG~n~~GQLG-~g~~~~~~~P~~V~~l~~~~V~~VacG~~hT~aI 638 (902)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888999999999999999999999999999986
No 14
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.13 E-value=2e-11 Score=104.88 Aligned_cols=67 Identities=39% Similarity=0.763 Sum_probs=47.0
Q ss_pred ccccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhc
Q 002602 642 KGVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLN 708 (902)
Q Consensus 642 ~~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~ 708 (902)
.|+...+...|+.|+..|++.+++|||+.||.+||..|+..+..++.......+++|||+.||..|+
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 4778888999999999999999999999999999999999988777333345689999999999875
No 15
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.2e-12 Score=148.75 Aligned_cols=153 Identities=30% Similarity=0.554 Sum_probs=135.9
Q ss_pred CceEecccCCCCeEEEEecCCEEEEEEcCCcEEEEeCCCCCCCCCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEc
Q 002602 286 LPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTL 365 (902)
Q Consensus 286 ~P~~l~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~ 365 (902)
.|+.+..+...+|.+++||.+|.++++..|++|.||.|.+||+|++....-..|.+++.+.+....+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 35555555566899999999999999999999999999999999995444444999999999999999999999998874
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCcceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCCCCcc
Q 002602 366 SGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSV 445 (902)
Q Consensus 366 dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~ 445 (902)
|+++++.+|.++++|....||+|++-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999987788888
Q ss_pred cccccccccCeEEEEEecCceeEEEEeecccccCCcccCCCcEEEecCCCCC
Q 002602 446 PREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEG 497 (902)
Q Consensus 446 P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~G 497 (902)
|..+..+.+..+..|+||..|+.++.. .-|+.|..|.+..|
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG 156 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC
Confidence 999988888899999999999999975 67899999998877
No 16
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.02 E-value=3.5e-10 Score=90.89 Aligned_cols=50 Identities=42% Similarity=0.759 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCCCCC-CCCCcccccceEeecCCCCCEEEEEecCcEEEEE
Q 002602 314 QGQIFSWGEGSGGKLG-HGVEADVSYPKLIDALNGSNIHMVACGEFHTCAV 363 (902)
Q Consensus 314 dG~Vy~wG~N~~GQLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 363 (902)
||+||+||.|.+|||| .+.......|++|..+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999987
No 17
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=9.8e-11 Score=135.76 Aligned_cols=70 Identities=40% Similarity=0.806 Sum_probs=63.2
Q ss_pred ccccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhccCCCC
Q 002602 642 KGVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNTTSES 713 (902)
Q Consensus 642 ~~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~~~~~ 713 (902)
+.-.|.|...|..|+..|+++.++|||++||.+||..|+++-+.++.++ +.+|+|||+.||+.+.+...+
T Consensus 158 ~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~G--i~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLG--IEKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCcccccccccceeeeeeeeccccccccccchhhccCccccccCccccc--ccccceehhhhHHHhhhcccc
Confidence 4455678899999999999999999999999999999999999999999 669999999999999876654
No 18
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.9e-11 Score=138.28 Aligned_cols=180 Identities=29% Similarity=0.368 Sum_probs=140.1
Q ss_pred CccEEEEeecCCcceeeeeCCeEEEeccCCCCCCCCCCCCCCcccccccccccCeEEEEEecCceeEEEEeecccccCCc
Q 002602 402 GLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSN 481 (902)
Q Consensus 402 ~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~~ 481 (902)
-.+|.+++||.+|+++++..|++|.||.|.+||+|++.......|..++.+.+.+..+|++|..|++++.- ....
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~-----~~~~ 87 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS-----HTVL 87 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-----chhh
Confidence 34689999999999999999999999999999999995544445999999999999999999999999862 2345
Q ss_pred ccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeeecCCCCeEEeecCccEEEEE-ecCCcEEEEecCCCC--CCCCCCCCC
Q 002602 482 GLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIAL-TATGQVFSMGSADYG--QLGSPGSTG 558 (902)
Q Consensus 482 ~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~htlaL-t~~G~Vy~wG~n~~G--QLG~~~~~~ 558 (902)
.+..|.+|++|....||+|+.-......|..+..+.+..+.+|+||..|+++. ..-|++|.+|.+..| ++-...
T Consensus 88 lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s--- 164 (850)
T KOG0941|consen 88 LTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLS--- 164 (850)
T ss_pred cchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccc---
Confidence 55799999999999999999877788888888888889999999999998876 567899999988877 111000
Q ss_pred ccceeee--cCCCCCCEEEEEecCCEEEEEEcCC
Q 002602 559 KFPTRIE--GNIKHRYIEDIACGSYHIAVVSSKS 590 (902)
Q Consensus 559 ~~P~~v~--~~l~~~~V~~Ia~G~~hs~aLT~~G 590 (902)
.+.... +.-....+..+..|.+.+..|...+
T Consensus 165 -~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 165 -GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred -hhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 000000 0011123455778888888776544
No 20
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.77 E-value=3.3e-09 Score=122.01 Aligned_cols=68 Identities=24% Similarity=0.582 Sum_probs=49.6
Q ss_pred cccccccc-cccccCCccccccc-----ccccccccCCceeecCCCCcccccc--cc---C-CCCCCCeeechhhhhhhc
Q 002602 641 HKGVSIAD-HSICSGCRNQFNFR-----RRRHNCYNCGLVYCKLCSSKKSMKT--AL---A-PEINKPYRVCDDCFIKLN 708 (902)
Q Consensus 641 ~~~v~~~d-~s~C~~C~~~F~~~-----r~rh~C~~CG~v~C~~Css~~~~~~--~~---~-p~~~~p~RVC~~C~~~l~ 708 (902)
..|..+.+ ...|+.|++.|.+. .++||||+||.+||..||+++..++ .+ + ++...|+|||+.||+++.
T Consensus 451 PvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~E 530 (1374)
T PTZ00303 451 PSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYE 530 (1374)
T ss_pred CCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHH
Confidence 34555555 46799999999754 4899999999999999999876321 11 1 222246799999997664
No 21
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.77 E-value=1.7e-09 Score=116.60 Aligned_cols=67 Identities=34% Similarity=0.718 Sum_probs=58.9
Q ss_pred ecccccccccccccCCcc-cccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhcc
Q 002602 640 LHKGVSIADHSICSGCRN-QFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNT 709 (902)
Q Consensus 640 ~~~~v~~~d~s~C~~C~~-~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~ 709 (902)
.+-|+++.+...|+.|.. .|++..+||||++||.+||..|+.++.+++.+ ..+|.|||+.||..|.+
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~---~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL---STKPIRVCDICFEELEK 226 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc---CCCCceecHHHHHHHhc
Confidence 345888899999999999 89999999999999999999999998555443 45899999999999976
No 22
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=98.76 E-value=1.2e-09 Score=81.07 Aligned_cols=26 Identities=58% Similarity=0.593 Sum_probs=24.4
Q ss_pred HHHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 872 QEEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
+|||+|||||||||||||+|||+|..
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~mae 26 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAE 26 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999974
No 23
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.75 E-value=1.3e-08 Score=72.56 Aligned_cols=30 Identities=47% Similarity=1.008 Sum_probs=26.1
Q ss_pred EEEEEecCCEEEEEEcCCcEEEEeCCCCCC
Q 002602 573 IEDIACGSYHIAVVSSKSEVYTWGKGANGQ 602 (902)
Q Consensus 573 V~~Ia~G~~hs~aLT~~G~VytWG~n~~GQ 602 (902)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 24
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.71 E-value=4.2e-09 Score=116.05 Aligned_cols=72 Identities=32% Similarity=0.650 Sum_probs=63.5
Q ss_pred CcceeeeecccccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeech-----hhhhh
Q 002602 633 NFTAAICLHKGVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCD-----DCFIK 706 (902)
Q Consensus 633 ~hT~aI~~~~~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~-----~C~~~ 706 (902)
..++-|....|++..+...|+.|..+|.+.|+||||++||.+||+.||....++|..+. .+..|||. +||.-
T Consensus 885 stsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 885 STSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred ccccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceee
Confidence 34556677889999999999999999999999999999999999999999888888874 48899999 78754
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.70 E-value=2.4e-08 Score=71.11 Aligned_cols=30 Identities=33% Similarity=0.864 Sum_probs=26.0
Q ss_pred eEEEEecCCEEEEEEcCCcEEEEeCCCCCC
Q 002602 298 AQSIACGSKHAVLVTKQGQIFSWGEGSGGK 327 (902)
Q Consensus 298 I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GQ 327 (902)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 26
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.59 E-value=2.7e-08 Score=82.01 Aligned_cols=55 Identities=44% Similarity=1.003 Sum_probs=48.2
Q ss_pred cccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhh
Q 002602 649 HSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFI 705 (902)
Q Consensus 649 ~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~ 705 (902)
...|..|+..|++..++|||+.||.+||..|+..+...+.. ...+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35699999999999999999999999999999998776653 25689999999996
No 27
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=98.33 E-value=6.7e-08 Score=109.06 Aligned_cols=110 Identities=26% Similarity=0.459 Sum_probs=91.9
Q ss_pred HHHHHHHhcCceEEEE-ecCCCceeEEEEEeCCCCeEEEecCCc------------ceeEecceeeeeecccCChhhhcC
Q 002602 15 EQAVRVLKKGTYLLKY-GRRGKPKFCPFRLSSDEKLLIWYAGKE------------EKQLKLSHVSRIIPGQRTAVFQRY 81 (902)
Q Consensus 15 ~~~l~~L~~Gt~l~K~-~r~~kp~~r~f~l~~d~~~l~W~~~~~------------~~~i~l~~I~eIr~G~~t~~f~~~ 81 (902)
.|-|.+|..||.|.|. +|+.+-++.+.+|+++ .+++.|.+-. .+.++++||+.|..|++++..+..
T Consensus 534 qqrLnrL~eGt~FRKl~~rrrqdkFWycrLspn-hKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek 612 (713)
T KOG2999|consen 534 QQRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPN-HKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEK 612 (713)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhheeeeecCC-cceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhc
Confidence 5789999999999999 5567889999999999 6666666321 245999999999999999988765
Q ss_pred C----CCCCCCCeEEEEEc--C-ceeeEEeCCHHHHHHHHHHHHHHHHccc
Q 002602 82 P----QPEKEYQSFSLIYR--N-RSLDLICKDKDEAELWFTALRALISEDN 125 (902)
Q Consensus 82 ~----~~~~~~~~FSiiy~--~-rtLDLva~~~~e~~~Wv~gL~~Li~~~~ 125 (902)
. ..+.-++.|||.|. + .+|++||+|+.|+..|.+||.+|+.+.-
T Consensus 613 ~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~m 663 (713)
T KOG2999|consen 613 SALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSDM 663 (713)
T ss_pred chhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCChh
Confidence 2 23666899999995 3 8999999999999999999999997643
No 28
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.12 E-value=2.6e-05 Score=71.61 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=64.1
Q ss_pred CceEEEEecCCC-----ceeEEEEEeCCCCeEEEecC---CcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEE
Q 002602 24 GTYLLKYGRRGK-----PKFCPFRLSSDEKLLIWYAG---KEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIY 95 (902)
Q Consensus 24 Gt~l~K~~r~~k-----p~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy 95 (902)
|..|+|-.+.|+ -|.|+|.|+.. .|.|+.. ++..+|+|++|+.|..-.+. .| ....+|.|++
T Consensus 4 ~~~~~kr~~~~~~~~~n~KkRwF~Lt~~--~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~-~~-------~~~~~fqivt 73 (98)
T cd01244 4 NLQQVDRSRLAWKKVLHFKKRYFQLTTT--HLSWAKDVQCKKSALIKLAAIKGTEPLSDK-SF-------VNVDIITIVC 73 (98)
T ss_pred ccEEEEcccCCCccCcCCceeEEEECCC--EEEEECCCCCceeeeEEccceEEEEEcCCc-cc-------CCCceEEEEe
Confidence 445566543433 37799999954 7888763 34668999999988654432 12 1246999999
Q ss_pred cCceeeEEeCCHHHHHHHHHHHHH
Q 002602 96 RNRSLDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 96 ~~rtLDLva~~~~e~~~Wv~gL~~ 119 (902)
.+|+|-|.|++++|++.|+..|+.
T Consensus 74 ~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 74 EDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 29
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.73 E-value=0.00032 Score=64.52 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=66.3
Q ss_pred eEEEEecC-CCceeEEEEEeCCCCeEEEecC----CcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCcee
Q 002602 26 YLLKYGRR-GKPKFCPFRLSSDEKLLIWYAG----KEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSL 100 (902)
Q Consensus 26 ~l~K~~r~-~kp~~r~f~l~~d~~~l~W~~~----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtL 100 (902)
.|.|-+.. +.=+.|+|.|..+...|.++.+ +....|+|+++..|....... .-+.......+|.|...+|++
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~~~~~~~~~f~i~t~~r~~ 80 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAPKHTSRKGFFDLKTSKRTY 80 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCCCCCCCceEEEEEeCCceE
Confidence 35555433 4457789999987678888873 345679999988887643221 001112344678887788999
Q ss_pred eEEeCCHHHHHHHHHHHHHHH
Q 002602 101 DLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 101 DLva~~~~e~~~Wv~gL~~Li 121 (902)
.|.|++++|++.|+..|+.+|
T Consensus 81 ~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 81 NFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999998764
No 30
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.71 E-value=1.5e-05 Score=86.03 Aligned_cols=84 Identities=26% Similarity=0.574 Sum_probs=66.1
Q ss_pred EEecCCCcceeeee-----cccccccccccccCCcccccc-----------cccccccccCCceeecCCCCccccccccC
Q 002602 627 SVVCGSNFTAAICL-----HKGVSIADHSICSGCRNQFNF-----------RRRRHNCYNCGLVYCKLCSSKKSMKTALA 690 (902)
Q Consensus 627 ~VacG~~hT~aI~~-----~~~v~~~d~s~C~~C~~~F~~-----------~r~rh~C~~CG~v~C~~Css~~~~~~~~~ 690 (902)
-++||.+--+++-+ .....+.+...|..|+++|-| +-+.|||+.||..+|..|++++...|.++
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 47787776666532 123445677889999999843 44589999999999999999999999998
Q ss_pred CCCCCCeeechhhhhhhccCCC
Q 002602 691 PEINKPYRVCDDCFIKLNTTSE 712 (902)
Q Consensus 691 p~~~~p~RVC~~C~~~l~~~~~ 712 (902)
.. ..+|+|++||..++..+.
T Consensus 335 ~e--~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 335 FE--FSVRVCDSCYPTIKDEER 354 (404)
T ss_pred ce--eEEEEecccchhhhcCCC
Confidence 55 789999999999975444
No 31
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.69 E-value=0.00026 Score=66.11 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=58.2
Q ss_pred ceeEEEEEeCCCCeEEEecCC------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHH
Q 002602 36 PKFCPFRLSSDEKLLIWYAGK------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDE 109 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e 109 (902)
-+.|.|.|+. ..|.|+... ....|+|.++..|..-..... .........||.|+..+|++-|.|+|++|
T Consensus 21 wKkRwFvL~~--~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~---~~~~~~~~~~F~i~t~~r~~yl~A~s~~e 95 (106)
T cd01238 21 YKERLFVLTK--SKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN---PPIPERFKYPFQVVHDEGTLYVFAPTEEL 95 (106)
T ss_pred ceeEEEEEcC--CEEEEECCCcccccCcceeEECCcceEEEEecCCcC---cccccccCccEEEEeCCCeEEEEcCCHHH
Confidence 4679999964 488888743 346799999877665332210 00112345799999999999999999999
Q ss_pred HHHHHHHHHH
Q 002602 110 AELWFTALRA 119 (902)
Q Consensus 110 ~~~Wv~gL~~ 119 (902)
++.||..|+.
T Consensus 96 r~~WI~ai~~ 105 (106)
T cd01238 96 RKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 32
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.61 E-value=6.9e-06 Score=90.95 Aligned_cols=67 Identities=33% Similarity=0.680 Sum_probs=50.3
Q ss_pred cccccccccccCCcccccccccccccccCCceeecCCCCcccc------------cccc--------CCCCCCCeeechh
Q 002602 643 GVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSM------------KTAL--------APEINKPYRVCDD 702 (902)
Q Consensus 643 ~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~------------~~~~--------~p~~~~p~RVC~~ 702 (902)
|..+.+...|..|.+.|+..++|||||-||.|.|..|+.--.+ .... .+....+.|+|..
T Consensus 174 W~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~h 253 (505)
T KOG1842|consen 174 WLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCMH 253 (505)
T ss_pred ccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHHH
Confidence 6666777899999999999999999999999999999743220 0011 1222356899999
Q ss_pred hhhhhcc
Q 002602 703 CFIKLNT 709 (902)
Q Consensus 703 C~~~l~~ 709 (902)
|-..|-.
T Consensus 254 Cl~~L~~ 260 (505)
T KOG1842|consen 254 CLDNLFR 260 (505)
T ss_pred HHHHHHH
Confidence 9887643
No 33
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.57 E-value=0.00043 Score=63.81 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=59.8
Q ss_pred ceeEEEEEeCCCCeEEEecCC----cc-eeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHHH
Q 002602 36 PKFCPFRLSSDEKLLIWYAGK----EE-KQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDEA 110 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~----~~-~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~ 110 (902)
=+.|+|.|... .|.|+... +. ..|+|+++..|+...+.. +......||.|++.+||.-|.|+|++|+
T Consensus 19 WkrRwF~L~~~--~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~rt~~l~A~se~e~ 90 (101)
T cd01264 19 WKTRYFTLSGA--QLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTADKTYILKAKDEKNA 90 (101)
T ss_pred ceeEEEEEeCC--EEEEEeccCccCCCCceEEcccceEEeeccccc------cccccCcEEEEEcCCceEEEEeCCHHHH
Confidence 35688999954 78888743 23 689999999999875441 1112257999999999999999999999
Q ss_pred HHHHHHHHH
Q 002602 111 ELWFTALRA 119 (902)
Q Consensus 111 ~~Wv~gL~~ 119 (902)
+.|+..|+.
T Consensus 91 e~WI~~i~~ 99 (101)
T cd01264 91 EEWLQCLNI 99 (101)
T ss_pred HHHHHHHHh
Confidence 999998864
No 34
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.55 E-value=0.00055 Score=63.19 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=63.2
Q ss_pred HhcCceEEEEecCCCceeEEEEEeCCCCeEEEecCC----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEc
Q 002602 21 LKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYR 96 (902)
Q Consensus 21 L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 96 (902)
|++|-...|-+..+.=+.|+|.|... .|.++... ....|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRP--YLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECC--EEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 45555544444445567899999975 78777743 345677776532211111111 112469999999
Q ss_pred CceeeEEeCCHHHHHHHHHHHHHHHH
Q 002602 97 NRSLDLICKDKDEAELWFTALRALIS 122 (902)
Q Consensus 97 ~rtLDLva~~~~e~~~Wv~gL~~Li~ 122 (902)
+|++-|.|+|++|++.|+..|+.++.
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999999998875
No 35
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.00083 Score=61.46 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=61.7
Q ss_pred ceEEEEecC----CCceeEEEEEeCCCCeEEEecCC----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEc
Q 002602 25 TYLLKYGRR----GKPKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYR 96 (902)
Q Consensus 25 t~l~K~~r~----~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 96 (902)
..|.|.+.+ +| +.|.|.|..+...|.++... +...|+|.++..+.. +.....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEcC
Confidence 357787543 34 77899998776788888743 345688877544321 1112568999999
Q ss_pred CceeeEEeCCHHHHHHHHHHHHHH
Q 002602 97 NRSLDLICKDKDEAELWFTALRAL 120 (902)
Q Consensus 97 ~rtLDLva~~~~e~~~Wv~gL~~L 120 (902)
+|+..|.|+|++|++.||..|+..
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 999999999999999999998864
No 36
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.52 E-value=0.00054 Score=63.66 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=62.1
Q ss_pred EecCCCceeEEEEEeCCCCeEEEec-----CCcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEe
Q 002602 30 YGRRGKPKFCPFRLSSDEKLLIWYA-----GKEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLIC 104 (902)
Q Consensus 30 ~~r~~kp~~r~f~l~~d~~~l~W~~-----~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva 104 (902)
+++|+| +.|.|.|..+ ..|.|+. .++...|+|++..+|..|.... ....||.|+..+|+.-|+|
T Consensus 19 ~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~A 87 (104)
T cd01236 19 HRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIKA 87 (104)
T ss_pred eeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCCceEEEEe
Confidence 344544 6688999866 5677753 2356789999999999887431 1267999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 002602 105 KDKDEAELWFTALRA 119 (902)
Q Consensus 105 ~~~~e~~~Wv~gL~~ 119 (902)
++++|++.|+..|..
T Consensus 88 ete~E~~~Wi~~l~~ 102 (104)
T cd01236 88 ETKEEISWWLNMLMV 102 (104)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999864
No 37
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.41 E-value=0.0022 Score=57.93 Aligned_cols=89 Identities=22% Similarity=0.357 Sum_probs=69.0
Q ss_pred eEEEEe-cCCCceeEEEEEeCCCCeEEEecCC-------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC
Q 002602 26 YLLKYG-RRGKPKFCPFRLSSDEKLLIWYAGK-------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN 97 (902)
Q Consensus 26 ~l~K~~-r~~kp~~r~f~l~~d~~~l~W~~~~-------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 97 (902)
.|.|.+ ..++.+.|+|.|..+ .|.++... ....|+|.++ +|+.....+. ........||.|.+.+
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~--~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDS--YLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETT--EEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETT
T ss_pred EEEEECCCCCCeEEEEEEEECC--EEEEEecCccccceeeeEEEEecCc-eEEEcCcccc----ccccCCCcEEEEEeCC
Confidence 345554 567788999999886 56555532 2456999999 8888777643 1446678999999988
Q ss_pred c-eeeEEeCCHHHHHHHHHHHHHHH
Q 002602 98 R-SLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 98 r-tLDLva~~~~e~~~Wv~gL~~Li 121 (902)
+ ++-|.|+|+++++.|+..|+..+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999876
No 38
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.38 E-value=0.0015 Score=58.09 Aligned_cols=90 Identities=26% Similarity=0.358 Sum_probs=67.0
Q ss_pred hcCceEEEEe-cCCCceeEEEEEeCCCCeEEEecCC-------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEE
Q 002602 22 KKGTYLLKYG-RRGKPKFCPFRLSSDEKLLIWYAGK-------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSL 93 (902)
Q Consensus 22 ~~Gt~l~K~~-r~~kp~~r~f~l~~d~~~l~W~~~~-------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSi 93 (902)
+.|....+.. ..++.+.|++.|..+ .|.++... ....|+|+++ .|..+...+. .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3454444443 367888899999986 56555522 3456889888 7777766533 344689999
Q ss_pred EEcCc-eeeEEeCCHHHHHHHHHHHHHHH
Q 002602 94 IYRNR-SLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 94 iy~~r-tLDLva~~~~e~~~Wv~gL~~Li 121 (902)
..+++ ++-|.|++.+|++.|+..|+.++
T Consensus 73 ~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99886 99999999999999999998875
No 39
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.29 E-value=0.0017 Score=60.77 Aligned_cols=81 Identities=25% Similarity=0.280 Sum_probs=58.7
Q ss_pred CceeEEEEEeCCCC-----eEEEecC----CcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeC
Q 002602 35 KPKFCPFRLSSDEK-----LLIWYAG----KEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICK 105 (902)
Q Consensus 35 kp~~r~f~l~~d~~-----~l~W~~~----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~ 105 (902)
.=+.|+|.|..+.. .|.+|.. +..+.|+|.++..|..+.... .....-...|.|....|++-|+|+
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~ 92 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAK 92 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEEC
Confidence 34789999987632 4677763 346789999988876653221 011122356999988899999999
Q ss_pred CHHHHHHHHHHHHHH
Q 002602 106 DKDEAELWFTALRAL 120 (902)
Q Consensus 106 ~~~e~~~Wv~gL~~L 120 (902)
+++|++.||..|+.|
T Consensus 93 s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 93 NEEEMTLWVNCICKL 107 (108)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999764
No 40
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.29 E-value=0.00013 Score=88.81 Aligned_cols=61 Identities=30% Similarity=0.532 Sum_probs=49.9
Q ss_pred ecccccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhh
Q 002602 640 LHKGVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDC 703 (902)
Q Consensus 640 ~~~~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C 703 (902)
..-|+.......||.|.+.|.+..+|||||+||.|+|..|+..|..+.-+. .+..|||.-|
T Consensus 548 qP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~---e~~~rv~nV~ 608 (1287)
T KOG1841|consen 548 QPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS---ESEGRVSNVD 608 (1287)
T ss_pred CCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC---cccccccccc
Confidence 456888888999999999999999999999999999999999886665443 3455666544
No 41
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=7.7e-05 Score=82.08 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=54.4
Q ss_pred ccccccccccccCCccccc-ccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhc
Q 002602 642 KGVSIADHSICSGCRNQFN-FRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLN 708 (902)
Q Consensus 642 ~~v~~~d~s~C~~C~~~F~-~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~ 708 (902)
.|.+.....+|++|...|+ ..-+|||||.|+.+||..|+.-+...+... ....++|||++|+..|.
T Consensus 153 ~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~-a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 153 VFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPF-AADPLQRVLDSCAFNLE 219 (473)
T ss_pred cccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCc-ccCCHHHHHhhHhhccC
Confidence 4556667889999999998 788999999999999999987776665543 23478999999999983
No 42
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.24 E-value=0.0027 Score=58.60 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=63.5
Q ss_pred HhcCceEEEEecCCCceeEEEEEeCCCCeEEEecCC--------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEE
Q 002602 21 LKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGK--------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFS 92 (902)
Q Consensus 21 L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~--------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FS 92 (902)
+++|. |+|++|++ ++.|+|.|=.| .|+++... ....|+|+++. |+...+. .....||.
T Consensus 3 ikEG~-L~K~~~k~-~~~R~~FLFnD--~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~---------~~~~~~F~ 68 (99)
T cd01220 3 IRQGC-LLKLSKKG-LQQRMFFLFSD--LLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE---------WGVPHCFT 68 (99)
T ss_pred eeEEE-EEEEeCCC-CceEEEEEccc--eEEEEEeecCCCceEEEEEEEEcCceE-EeeccCC---------cCCceeEE
Confidence 45554 57887774 88899999998 56666521 13447777664 5443321 12246999
Q ss_pred EEEcCceeeEEeCCHHHHHHHHHHHHHHHH
Q 002602 93 LIYRNRSLDLICKDKDEAELWFTALRALIS 122 (902)
Q Consensus 93 iiy~~rtLDLva~~~~e~~~Wv~gL~~Li~ 122 (902)
|.-..+++-|.|++++|.+.|+..|+.-|+
T Consensus 69 I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 69 IFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 998889999999999999999999987764
No 43
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.16 E-value=0.0043 Score=57.64 Aligned_cols=90 Identities=16% Similarity=0.351 Sum_probs=61.6
Q ss_pred eEEEEecC--CCceeEEEEEeCCCCeEEEecCC----cceeEecceee---eeecccCChhhhcCCCCCCCCCeEEEEEc
Q 002602 26 YLLKYGRR--GKPKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVS---RIIPGQRTAVFQRYPQPEKEYQSFSLIYR 96 (902)
Q Consensus 26 ~l~K~~r~--~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~---eIr~G~~t~~f~~~~~~~~~~~~FSiiy~ 96 (902)
.|.|-+.+ ..-+.|.|.|.. ..|.++..+ ....|+|.++. +|..+..... ......||.|+..
T Consensus 4 ~L~K~g~~~~k~wkkRwFvL~~--~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t~ 75 (103)
T cd01251 4 FMEKTGPKHTEGFKKRWFTLDD--RRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVTP 75 (103)
T ss_pred eEEecCCCCCCCceeEEEEEeC--CEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEeC
Confidence 35665432 224889999984 478888743 34458887654 3443321110 0111249999999
Q ss_pred CceeeEEeCCHHHHHHHHHHHHHHHHc
Q 002602 97 NRSLDLICKDKDEAELWFTALRALISE 123 (902)
Q Consensus 97 ~rtLDLva~~~~e~~~Wv~gL~~Li~~ 123 (902)
+|+.-|.|++++|++.|+..|+..|..
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999998864
No 44
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.04 E-value=0.0053 Score=56.78 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=61.2
Q ss_pred HhcCceEEEEecC-CCceeEEEEEeCCCCeEEEecCC----c-----ceeEecceeeeeecccCChhhhcCCCCCCCCCe
Q 002602 21 LKKGTYLLKYGRR-GKPKFCPFRLSSDEKLLIWYAGK----E-----EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQS 90 (902)
Q Consensus 21 L~~Gt~l~K~~r~-~kp~~r~f~l~~d~~~l~W~~~~----~-----~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~ 90 (902)
++.|. |+|.+++ .+++.|+|.|-.| .|+.+..+ . ...|+|+++. |.... ......+
T Consensus 3 ikeG~-L~K~~~~~~~~k~RyffLFnd--~Ll~~~~~~~~~~~~y~~~~~i~l~~~~-v~~~~----------~~~~~~~ 68 (101)
T cd01219 3 LKEGS-VLKISSTTEKTEERYLFLFND--LLLYCVPRKMIGGSKFKVRARIDVSGMQ-VCEGD----------NLERPHS 68 (101)
T ss_pred ccceE-EEEEecCCCCceeEEEEEeCC--EEEEEEcccccCCCcEEEEEEEecccEE-EEeCC----------CCCcCce
Confidence 45565 4677665 6789999999998 45554422 1 1225555432 22211 1223578
Q ss_pred EEEEEcCceeeEEeCCHHHHHHHHHHHHHHHH
Q 002602 91 FSLIYRNRSLDLICKDKDEAELWFTALRALIS 122 (902)
Q Consensus 91 FSiiy~~rtLDLva~~~~e~~~Wv~gL~~Li~ 122 (902)
|.|....|++.|.|++++|.+.|+..|+..++
T Consensus 69 F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 69 FLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 99999899999999999999999999998876
No 45
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.0043 Score=55.89 Aligned_cols=71 Identities=30% Similarity=0.554 Sum_probs=51.8
Q ss_pred CCCceeEEEEEeCCCCeEEEecCCc----ceeEeccee--eeeecccCChhhhcCCCCCCCCCeEEEEE-------cC-c
Q 002602 33 RGKPKFCPFRLSSDEKLLIWYAGKE----EKQLKLSHV--SRIIPGQRTAVFQRYPQPEKEYQSFSLIY-------RN-R 98 (902)
Q Consensus 33 ~~kp~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I--~eIr~G~~t~~f~~~~~~~~~~~~FSiiy-------~~-r 98 (902)
+|-.|.|.|.|..+ +|.|+.... +.-|+|+++ ++|-.|.-+ ...||.|++ ++ |
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~s-----------k~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMS-----------RNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccC-----------CCcEEEEEcCcccccccchh
Confidence 45678899999988 899998443 234888765 344444222 137899986 33 8
Q ss_pred eeeEEeCCHHHHHHHHHH
Q 002602 99 SLDLICKDKDEAELWFTA 116 (902)
Q Consensus 99 tLDLva~~~~e~~~Wv~g 116 (902)
+|+|.|++.||.+.|...
T Consensus 83 ~lel~~~~~e~vdswkas 100 (110)
T cd01256 83 QLELGCETLEEVDSWKAS 100 (110)
T ss_pred eeeecCCCHHHHHHHHHH
Confidence 999999999999999764
No 46
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.81 E-value=0.012 Score=53.29 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=55.4
Q ss_pred eEEEEecC-CCceeEEEEEeCCCCeEEEecCCc------ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-
Q 002602 26 YLLKYGRR-GKPKFCPFRLSSDEKLLIWYAGKE------EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN- 97 (902)
Q Consensus 26 ~l~K~~r~-~kp~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~- 97 (902)
.|.|.+.. ..=+.|+|.|. + ..|.++..+. ...|+|+...-+. ...+..+|.|+..+
T Consensus 4 ~L~K~~~~~k~Wk~RwFvL~-~-g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~-------------~~~~~~~F~i~~~~~ 68 (91)
T cd01247 4 VLSKWTNYINGWQDRYFVLK-E-GNLSYYKSEAEKSHGCRGSIFLKKAIIAA-------------HEFDENRFDISVNEN 68 (91)
T ss_pred EEEEeccccCCCceEEEEEE-C-CEEEEEecCccCcCCCcEEEECcccEEEc-------------CCCCCCEEEEEeCCC
Confidence 46677554 22466889995 3 6888887432 3567776532111 12235789998866
Q ss_pred ceeeEEeCCHHHHHHHHHHHHH
Q 002602 98 RSLDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 98 rtLDLva~~~~e~~~Wv~gL~~ 119 (902)
|++.|.|.+++|++.|+..|+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999863
No 47
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.74 E-value=0.0086 Score=52.50 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=55.5
Q ss_pred CCceeEEEEEeCCCCeEEEecCC------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-ceeeEEeCC
Q 002602 34 GKPKFCPFRLSSDEKLLIWYAGK------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN-RSLDLICKD 106 (902)
Q Consensus 34 ~kp~~r~f~l~~d~~~l~W~~~~------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~ 106 (902)
+..+.|++.|..+ ...++.... ....|+|.+ ..|....... ....+|.|+... +.+.|.|++
T Consensus 14 ~~w~~~~~~L~~~-~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~~~~~~~~~s 82 (96)
T cd00821 14 KGWKRRWFVLFND-LLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTPDGRSYLLQAES 82 (96)
T ss_pred CCccEEEEEEECC-EEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecCCCcEEEEEeCC
Confidence 5567888899876 334444422 234577776 5666555443 467899999987 999999999
Q ss_pred HHHHHHHHHHHHH
Q 002602 107 KDEAELWFTALRA 119 (902)
Q Consensus 107 ~~e~~~Wv~gL~~ 119 (902)
.+|++.|+..|+.
T Consensus 83 ~~~~~~W~~~l~~ 95 (96)
T cd00821 83 EEEREEWIEALQS 95 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999975
No 48
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.52 E-value=0.024 Score=50.60 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=54.6
Q ss_pred EEEEe-cCCCceeEEEEEeCCCCeEEEecCCc------ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-c
Q 002602 27 LLKYG-RRGKPKFCPFRLSSDEKLLIWYAGKE------EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN-R 98 (902)
Q Consensus 27 l~K~~-r~~kp~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-r 98 (902)
|.|.+ ..+..+.|+|.|.. ..|.++.+.. ...|.|.... |... .....+|.|...+ +
T Consensus 5 L~k~~~~~~~W~~r~~vl~~--~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~------------~~~~~~F~i~~~~~~ 69 (91)
T cd01246 5 LLKWTNYLKGWQKRWFVLDN--GLLSYYKNKSSMRGKPRGTILLSGAV-ISED------------DSDDKCFTIDTGGDK 69 (91)
T ss_pred EEEecccCCCceeeEEEEEC--CEEEEEecCccCCCCceEEEEeceEE-EEEC------------CCCCcEEEEEcCCCC
Confidence 44543 33557889999984 4787777432 3456666543 2221 1125799999977 9
Q ss_pred eeeEEeCCHHHHHHHHHHHHH
Q 002602 99 SLDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 99 tLDLva~~~~e~~~Wv~gL~~ 119 (902)
++-|.|++.+|++.|+..|+.
T Consensus 70 ~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 70 TLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred EEEEECCCHHHHHHHHHHHHh
Confidence 999999999999999999874
No 49
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.36 E-value=0.034 Score=49.90 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCCceeEEEEEeCCCCeEEEecCCc------ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCC
Q 002602 33 RGKPKFCPFRLSSDEKLLIWYAGKE------EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKD 106 (902)
Q Consensus 33 ~~kp~~r~f~l~~d~~~l~W~~~~~------~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~ 106 (902)
.+.-+.|+|.|.. ..|.++.... ...|+|..+. |..-... .....||.|+..++++-|.|++
T Consensus 13 ~~~W~kr~~~L~~--~~l~~y~~~~~~~~~~~~~i~l~~~~-v~~~~~~---------~~~~~~f~i~~~~~~~~f~a~s 80 (94)
T cd01250 13 NKEWKKRWFVLKN--GQLTYHHRLKDYDNAHVKEIDLRRCT-VRHNGKQ---------PDRRFCFEVISPTKTWHFQADS 80 (94)
T ss_pred CCCceEEEEEEeC--CeEEEEcCCcccccccceEEeccceE-EecCccc---------cCCceEEEEEcCCcEEEEECCC
Confidence 3456788899984 4676665332 2345554331 1111111 1235799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002602 107 KDEAELWFTALR 118 (902)
Q Consensus 107 ~~e~~~Wv~gL~ 118 (902)
.++++.|+..|+
T Consensus 81 ~~~~~~Wi~al~ 92 (94)
T cd01250 81 EEERDDWISAIQ 92 (94)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 50
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.34 E-value=0.028 Score=51.18 Aligned_cols=72 Identities=24% Similarity=0.281 Sum_probs=52.2
Q ss_pred CceeEEEEEeCCCCeEEEecCC----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-ceeeEEeCCHHH
Q 002602 35 KPKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN-RSLDLICKDKDE 109 (902)
Q Consensus 35 kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~~~e 109 (902)
.=+.|+|.|..+ .|.++.+. ....|+|... .|..-. +.....||.|...+ +++-|.|++++|
T Consensus 19 ~WkkrwfvL~~~--~L~yyk~~~~~~~~~~I~L~~~-~v~~~~----------~~~k~~~F~I~~~~~~~~~f~a~s~~e 85 (96)
T cd01260 19 KWARRWFVLKGT--TLYWYRSKQDEKAEGLIFLSGF-TIESAK----------EVKKKYAFKVCHPVYKSFYFAAETLDD 85 (96)
T ss_pred CceeEEEEEECC--EEEEECCCCCCccceEEEccCC-EEEEch----------hcCCceEEEECCCCCcEEEEEeCCHHH
Confidence 467788999854 78887633 3456888754 222211 11235799999877 999999999999
Q ss_pred HHHHHHHHHH
Q 002602 110 AELWFTALRA 119 (902)
Q Consensus 110 ~~~Wv~gL~~ 119 (902)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 51
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.22 E-value=0.048 Score=50.51 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=57.1
Q ss_pred CceeEEEEEeCCC----CeEEEecCC---------cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceee
Q 002602 35 KPKFCPFRLSSDE----KLLIWYAGK---------EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLD 101 (902)
Q Consensus 35 kp~~r~f~l~~d~----~~l~W~~~~---------~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLD 101 (902)
.-+.|+|.|..+. ..|.||.+. +.+.|+|+++..|..-.+ .....+|.|+..+++.-
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d----------~k~~~~f~i~t~dr~f~ 82 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD----------AKHRHLIALYTRDEYFA 82 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc----------cccCeEEEEEeCCceEE
Confidence 3456899998662 378888742 346799999988863111 12247999999999999
Q ss_pred EEeCCHHHHHHHHHHHHH
Q 002602 102 LICKDKDEAELWFTALRA 119 (902)
Q Consensus 102 Lva~~~~e~~~Wv~gL~~ 119 (902)
|+|++++|.+.|+..|.-
T Consensus 83 l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 83 VAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEeCCHHHHHHHHHHHhh
Confidence 999999999999998864
No 52
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.06 E-value=0.062 Score=47.34 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=56.9
Q ss_pred CCceeEEEEEeCCCCeEEEecCC---cc--eeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEc---CceeeEEeC
Q 002602 34 GKPKFCPFRLSSDEKLLIWYAGK---EE--KQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYR---NRSLDLICK 105 (902)
Q Consensus 34 ~kp~~r~f~l~~d~~~l~W~~~~---~~--~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~---~rtLDLva~ 105 (902)
+..+.|+|.|..+ .|..+..+ .. ..+++..+. |..+.... ....+|.|++. .+.+-|.|+
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 5788899999865 66666632 22 268888887 77766543 24579999998 689999999
Q ss_pred CHHHHHHHHHHHHH
Q 002602 106 DKDEAELWFTALRA 119 (902)
Q Consensus 106 ~~~e~~~Wv~gL~~ 119 (902)
+.+|++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998864
No 53
>PF15409 PH_8: Pleckstrin homology domain
Probab=95.94 E-value=0.059 Score=48.54 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=55.6
Q ss_pred eEEEEec-CCCc-eeEEEEEeCCCCeEEEecCCcc----eeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCce
Q 002602 26 YLLKYGR-RGKP-KFCPFRLSSDEKLLIWYAGKEE----KQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRS 99 (902)
Q Consensus 26 ~l~K~~r-~~kp-~~r~f~l~~d~~~l~W~~~~~~----~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rt 99 (902)
.|+|-++ +.+- +.|+|.|+.+...|.++....+ .+|+|.. ..-+ ..++.++|.|--+++.
T Consensus 2 ~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~------a~is--------~~~~~~~I~idsg~~i 67 (89)
T PF15409_consen 2 WLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL------AVIS--------ANKKSRRIDIDSGDEI 67 (89)
T ss_pred cceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc------eEEE--------ecCCCCEEEEEcCCeE
Confidence 3555533 3333 7899999888789998873332 2344421 1000 1234688999889999
Q ss_pred eeEEeCCHHHHHHHHHHHHH
Q 002602 100 LDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 100 LDLva~~~~e~~~Wv~gL~~ 119 (902)
-+|-|.++++++.|+..|+.
T Consensus 68 ~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 68 WHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEEcCCHHHHHHHHHHHHh
Confidence 99999999999999999985
No 54
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.91 E-value=0.081 Score=49.23 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=61.0
Q ss_pred eEEEEecCCCceeEEEEEeCCCCeEEEecC----C---cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCc
Q 002602 26 YLLKYGRRGKPKFCPFRLSSDEKLLIWYAG----K---EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNR 98 (902)
Q Consensus 26 ~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~----~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~r 98 (902)
.|+|+.|+ +|+.|+|.|=.| .|++.+. + ....++|.++. |..-.+. ..-..+|.|....|
T Consensus 9 ~L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~~~~k 75 (104)
T cd01218 9 VLTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIKTPTK 75 (104)
T ss_pred cEEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEecCCe
Confidence 46888866 688899999999 6667541 1 12346776652 2211111 12247899999999
Q ss_pred eeeEEeCCHHHHHHHHHHHHHHHHcc
Q 002602 99 SLDLICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 99 tLDLva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
++=+.|++++|-+.|+..|+.-++..
T Consensus 76 Sf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 76 SFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877653
No 55
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.79 E-value=0.082 Score=50.79 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=56.4
Q ss_pred eEEEEec-CCCceeEEEEEeCCCCeEEEecCC----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC---
Q 002602 26 YLLKYGR-RGKPKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN--- 97 (902)
Q Consensus 26 ~l~K~~r-~~kp~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~--- 97 (902)
.|.|-+. .+.-+.|+|.|... .|.++... ....|+|+++. |..... .....||.|+..+
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~~--~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEECC--EEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 3455543 24457899999754 78888742 35668888653 332211 1123567665522
Q ss_pred ------------------ceeeEEeCCHHHHHHHHHHHHHHHHcc
Q 002602 98 ------------------RSLDLICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 98 ------------------rtLDLva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
++.-|.|++.+|++.|+..|+..+...
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 466699999999999999999988754
No 56
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.72 E-value=0.017 Score=68.31 Aligned_cols=97 Identities=25% Similarity=0.305 Sum_probs=73.0
Q ss_pred HhcCceEEEE--ecC--CC--ceeEEEEEeCCCCeEEEecCC---cceeEecceeeeeecccCChhhhcCCCCCCCCCeE
Q 002602 21 LKKGTYLLKY--GRR--GK--PKFCPFRLSSDEKLLIWYAGK---EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSF 91 (902)
Q Consensus 21 L~~Gt~l~K~--~r~--~k--p~~r~f~l~~d~~~l~W~~~~---~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~F 91 (902)
+++|-.|+|+ +|+ |+ -|.|+|+|... .|.|.+++ +...|+|++|+.|-.=. ...+.-..+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~--~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTE--ELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccc--eeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceE
Confidence 4677888888 332 22 35699999887 78898743 34569999887653211 1125667899
Q ss_pred EEEEcCceeeEEeCCHHHHHHHHHHHHHHHHccccc
Q 002602 92 SLIYRNRSLDLICKDKDEAELWFTALRALISEDNRC 127 (902)
Q Consensus 92 Siiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~ 127 (902)
.|||.+|+|-|.|++-.|++.|+..|+......++.
T Consensus 635 qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~r 670 (800)
T KOG2059|consen 635 QVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQNR 670 (800)
T ss_pred EEEecCcceeEecCCchHHHHHHHHHHHHhccCcch
Confidence 999999999999999999999999999887766654
No 57
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.34 E-value=0.16 Score=47.96 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=62.5
Q ss_pred HHhcCceEEEEe-cCCCceeEEEEEeCCCCeEEEecCCcce---------eEeccee-----eeeecccCChhhhcCCCC
Q 002602 20 VLKKGTYLLKYG-RRGKPKFCPFRLSSDEKLLIWYAGKEEK---------QLKLSHV-----SRIIPGQRTAVFQRYPQP 84 (902)
Q Consensus 20 ~L~~Gt~l~K~~-r~~kp~~r~f~l~~d~~~l~W~~~~~~~---------~i~l~~I-----~eIr~G~~t~~f~~~~~~ 84 (902)
.++.|.. .|+. ++++++.|+|.|=.| .|+.+..+..+ .+.+.+. .+|.--.++
T Consensus 4 lI~EG~L-~ki~~~~~~~q~R~~FLFd~--~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~--------- 71 (112)
T cd01261 4 FIMEGTL-TRVGPSKKAKHERHVFLFDG--LMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDS--------- 71 (112)
T ss_pred ccccCcE-EEEecccCCcceEEEEEecC--eEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCC---------
Confidence 4556665 5665 457899999999888 56666532211 2333333 334333333
Q ss_pred CCCCCeEEEEEc-CceeeEEeCCHHHHHHHHHHHHHHHHc
Q 002602 85 EKEYQSFSLIYR-NRSLDLICKDKDEAELWFTALRALISE 123 (902)
Q Consensus 85 ~~~~~~FSiiy~-~rtLDLva~~~~e~~~Wv~gL~~Li~~ 123 (902)
+.....|-|+-. .+++-|.|++++|-+.|+..|..++.+
T Consensus 72 ~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 72 SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 223578999986 589999999999999999999988764
No 58
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.15 E-value=0.0074 Score=69.80 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=54.4
Q ss_pred ccccccccCCccccc-ccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhccCCCCC
Q 002602 646 IADHSICSGCRNQFN-FRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNTTSESG 714 (902)
Q Consensus 646 ~~d~s~C~~C~~~F~-~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~~~~~~ 714 (902)
......|+.|+..|. .+.+||||..||.++|..|+... +.+..+..+..|||-.||.....+..+.
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~---~~l~~~~s~ssrv~~~~~~~~~~a~~s~ 478 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFM---AKLSYDNSRSSRVCMDRYLTPSGAPGSP 478 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchh---hhhcccccchhhhhhhhccCCCCCCCCc
Confidence 345667999999987 78899999999999999999986 4445567789999999999987766644
No 59
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.79 E-value=0.2 Score=46.16 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=52.4
Q ss_pred ceeEEEEEeC--CCCeEEEecCC----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCc-eeeEEeCCHH
Q 002602 36 PKFCPFRLSS--DEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNR-SLDLICKDKD 108 (902)
Q Consensus 36 p~~r~f~l~~--d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~r-tLDLva~~~~ 108 (902)
-+.|.|.|.. ...+|.+++.. +...|+|.++ .|++-++.. .....||.|+...+ +.-.+|.+.+
T Consensus 16 wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~ 86 (98)
T cd01245 16 WKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSE 86 (98)
T ss_pred cceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHH
Confidence 3557888863 33677666532 2234777777 787776641 12248999999776 7777777779
Q ss_pred HHHHHHHHHHH
Q 002602 109 EAELWFTALRA 119 (902)
Q Consensus 109 e~~~Wv~gL~~ 119 (902)
|++.|+..|++
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 60
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.74 E-value=0.19 Score=46.60 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred hcCceEEEEecCCCceeEEEEEeCCCCeEEEecCCc---c-eeEecceee----eeecccCChhhhcCCCCCCCCCeEEE
Q 002602 22 KKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGKE---E-KQLKLSHVS----RIIPGQRTAVFQRYPQPEKEYQSFSL 93 (902)
Q Consensus 22 ~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~~---~-~~i~l~~I~----eIr~G~~t~~f~~~~~~~~~~~~FSi 93 (902)
+.|-..-+-...+.=+.|+|.|..| ..|.+|..++ + ..++|..+. .|..+. .....+|.|
T Consensus 3 k~G~L~K~g~~~~~Wk~R~f~L~~~-~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~-----------~~~~~~F~i 70 (102)
T cd01241 3 KEGWLHKRGEYIKTWRPRYFLLKSD-GSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTE-----------RPRPNTFII 70 (102)
T ss_pred EEEEEEeecCCCCCCeeEEEEEeCC-CeEEEEecCCCccCccccccCCeEEeeeeeeecc-----------CCCcceEEE
Confidence 4454443333345567899999987 5666554322 1 145555442 122221 122358999
Q ss_pred EEcC--cee--eEEeCCHHHHHHHHHHHHHH
Q 002602 94 IYRN--RSL--DLICKDKDEAELWFTALRAL 120 (902)
Q Consensus 94 iy~~--rtL--DLva~~~~e~~~Wv~gL~~L 120 (902)
.+-+ .++ .+.|++.+|++.|+..|+.+
T Consensus 71 ~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 71 RCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 8522 233 56799999999999999865
No 61
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=94.51 E-value=0.0041 Score=71.58 Aligned_cols=64 Identities=31% Similarity=0.678 Sum_probs=50.7
Q ss_pred ccccccc----ccccccCC-cccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhh
Q 002602 641 HKGVSIA----DHSICSGC-RNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIK 706 (902)
Q Consensus 641 ~~~v~~~----d~s~C~~C-~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~ 706 (902)
|+|.... ....|+.| +.-|....++|||+.||...|.+|..++.....-+ ...|.++||.|+..
T Consensus 314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g--se~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG--SENPADGCDQCPSV 382 (1141)
T ss_pred hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc--ccCcccccccccch
Confidence 4555444 45677775 55588778899999999999999999998887766 45899999999954
No 62
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=94.17 E-value=0.32 Score=45.88 Aligned_cols=93 Identities=26% Similarity=0.417 Sum_probs=47.9
Q ss_pred eEEEEecC-CCc-eeEEEEEeCCCCeEEEecCC-c--ceeEecceee-eeeccc---CChhhhc------CCCCCCCCCe
Q 002602 26 YLLKYGRR-GKP-KFCPFRLSSDEKLLIWYAGK-E--EKQLKLSHVS-RIIPGQ---RTAVFQR------YPQPEKEYQS 90 (902)
Q Consensus 26 ~l~K~~r~-~kp-~~r~f~l~~d~~~l~W~~~~-~--~~~i~l~~I~-eIr~G~---~t~~f~~------~~~~~~~~~~ 90 (902)
.|.|-+.+ +++ +.|+|-|..| ..|.++... . ...|..+... -++.|. ..+.+.. ..........
T Consensus 4 ~l~K~~~~~~kgWk~RwFiL~k~-~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (112)
T PF15413_consen 4 YLYKWGNKFGKGWKKRWFILRKD-GVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKV 82 (112)
T ss_dssp EEEE--TTS-S--EEEEEEEE-T-TEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEE
T ss_pred eEEEecCCCCcCccccEEEEEeC-CEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCC
Confidence 45566555 454 5588888874 788888751 1 1111111111 111111 1111111 1223555678
Q ss_pred EEEEEcCceeeEEeCCHHHHHHHHHHHHH
Q 002602 91 FSLIYRNRSLDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 91 FSiiy~~rtLDLva~~~~e~~~Wv~gL~~ 119 (902)
|+|..+.|+|.|.|++.+|...|+..|++
T Consensus 83 ~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 83 FSIFTPTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEE-SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred cEEECCCcEEEEEECCHHHHHHHHHHHHh
Confidence 88888899999999999999999999875
No 63
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.05 E-value=1.5 Score=57.15 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=64.0
Q ss_pred CCeEEee-cCccEEEEEecCCcEEEEecCCCCCCCCCCCCCccceeeecCCCCCCEEEEEecCCE-EEEEEcCCcEEE--
Q 002602 519 ISFCKVA-CGHSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYH-IAVVSSKSEVYT-- 594 (902)
Q Consensus 519 ~~I~~Ia-~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~h-s~aLT~~G~Vyt-- 594 (902)
..|..++ .+.++.++|++.|++-..= .-| .|..+...--...|.+|++-..| .+++|.+|++|.
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~-----k~g-------~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQ-----KPG-------RPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCcccccc-----CCC-------CCccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 3344443 4556777777777665422 111 14333322224679999998765 579999999998
Q ss_pred ---EeCCCCCCcCCCCCCCceeeEEeccccCccEEEEecCCCcceeeeecc
Q 002602 595 ---WGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAICLHK 642 (902)
Q Consensus 595 ---WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~VacG~~hT~aI~~~~ 642 (902)
|=.+..|- .......|+.+ ..+..|..+....+|.+.+....
T Consensus 771 k~~WQ~~~~~~----~~~~~W~~v~l--P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 771 KEAWQGNAEGD----QMAAKWQKVAL--PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred HHHhhCcccCC----ccccCceeccC--CCCCchhhhhcCCCCceEEEecC
Confidence 43333220 11233444444 46678999999999998887654
No 64
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.23 E-value=0.64 Score=44.47 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=57.5
Q ss_pred ceeEEEEEeCCCCeEEEecCC----cceeEecceeeeeecccCChhhhcC--CCCCCCCCeEEEEEcCceeeEEeCCHHH
Q 002602 36 PKFCPFRLSSDEKLLIWYAGK----EEKQLKLSHVSRIIPGQRTAVFQRY--PQPEKEYQSFSLIYRNRSLDLICKDKDE 109 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~----~~~~i~l~~I~eIr~G~~t~~f~~~--~~~~~~~~~FSiiy~~rtLDLva~~~~e 109 (902)
-+.|.|.|.+ +.|.++.+. ....|.++.--.|..|.....-... .........|.|...+|+|-|.|+|..+
T Consensus 33 w~kRWFvlr~--s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~ 110 (121)
T cd01254 33 WQKRWFIVKE--SFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRK 110 (121)
T ss_pred CcceeEEEeC--CEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHH
Confidence 4667888885 478777633 2344777777777777664322111 1113345789998899999999999999
Q ss_pred HHHHHHHHHH
Q 002602 110 AELWFTALRA 119 (902)
Q Consensus 110 ~~~Wv~gL~~ 119 (902)
++.|+..|+.
T Consensus 111 ~~~Wi~~i~~ 120 (121)
T cd01254 111 LKQWMASIED 120 (121)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 65
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.10 E-value=0.34 Score=58.83 Aligned_cols=107 Identities=19% Similarity=0.378 Sum_probs=81.9
Q ss_pred HHHHhcCceEEEEecC---CCceeEEEEEeCCCCeEEEecC-CcceeEecceeeeeecccCChh---------hhcC-CC
Q 002602 18 VRVLKKGTYLLKYGRR---GKPKFCPFRLSSDEKLLIWYAG-KEEKQLKLSHVSRIIPGQRTAV---------FQRY-PQ 83 (902)
Q Consensus 18 l~~L~~Gt~l~K~~r~---~kp~~r~f~l~~d~~~l~W~~~-~~~~~i~l~~I~eIr~G~~t~~---------f~~~-~~ 83 (902)
...|+.|+.|+|+--- +.| ..+++++..-.|.|.-. ++.-.+++..|.+.|.|+.... |..- ..
T Consensus 14 ~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~d 91 (1189)
T KOG1265|consen 14 TDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPPD 91 (1189)
T ss_pred cHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCcc
Confidence 4679999999999333 344 77899999888899874 4556799999999999965522 1111 12
Q ss_pred CCCCCCeEEEEEcC-----ceeeEEeCCHHHHHHHHHHHHHHHHcccc
Q 002602 84 PEKEYQSFSLIYRN-----RSLDLICKDKDEAELWFTALRALISEDNR 126 (902)
Q Consensus 84 ~~~~~~~FSiiy~~-----rtLDLva~~~~e~~~Wv~gL~~Li~~~~~ 126 (902)
...+..-.+|++|. ..++|||...+++..|..||-.|+-....
T Consensus 92 ~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~~~~~~ 139 (1189)
T KOG1265|consen 92 RSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLAKSLLA 139 (1189)
T ss_pred cccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHHHHHHH
Confidence 25567889999976 78999999999999999999888765543
No 66
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=92.67 E-value=1.6 Score=40.89 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=57.0
Q ss_pred eEEEEecCCCceeEEEEE--eCCCCeEEEec---------CCcceeEecceeeeeecccCChhhh-cCC-CCCCCCCeEE
Q 002602 26 YLLKYGRRGKPKFCPFRL--SSDEKLLIWYA---------GKEEKQLKLSHVSRIIPGQRTAVFQ-RYP-QPEKEYQSFS 92 (902)
Q Consensus 26 ~l~K~~r~~kp~~r~f~l--~~d~~~l~W~~---------~~~~~~i~l~~I~eIr~G~~t~~f~-~~~-~~~~~~~~FS 92 (902)
.|+|..|+|.-|.|.+.+ +.. .+++=.- ++++++|-+ .|...- +.+- +.. ....+.+.|-
T Consensus 2 eLlk~tr~G~l~~k~Vsvyink~-~qVilKmKskhv~Gafskkkk~VV~----~V~~~~--~awpgr~~~e~~~~~~yfg 74 (110)
T PF08458_consen 2 ELLKRTRKGDLHWKTVSVYINKK-GQVILKMKSKHVGGAFSKKKKSVVL----DVCSEI--PAWPGRELREDGEERRYFG 74 (110)
T ss_pred cceEecCCCceEEEEEEEEECCC-cEEEEEeecchhhhhhhcCCceEEE----EEccCc--ccCCCcccccCCceEEEEE
Confidence 588999999888877544 444 4554332 223333322 222210 0110 111 1122345566
Q ss_pred EEEcCceeeEEeCCHHHHHHHHHHHHHHHHcccc
Q 002602 93 LIYRNRSLDLICKDKDEAELWFTALRALISEDNR 126 (902)
Q Consensus 93 iiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~~ 126 (902)
|-...+.+.|.|.|..+.+.|+.|+++||.....
T Consensus 75 L~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~~~ 108 (110)
T PF08458_consen 75 LKTAQGVVEFECDSQREYKRWVQGIQHMLSQVAE 108 (110)
T ss_pred EEecCcEEEEEeCChhhHHHHHHHHHHHHHHhhc
Confidence 6666789999999999999999999999987553
No 67
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.00 E-value=1.2 Score=40.97 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=31.5
Q ss_pred CCCeEEEEEcC---ceeeEEeCCHHHHHHHHHHHHHHH
Q 002602 87 EYQSFSLIYRN---RSLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 87 ~~~~FSiiy~~---rtLDLva~~~~e~~~Wv~gL~~Li 121 (902)
+.++|.|+-.+ +++.|-|+++++-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 46999998864 699999999999999999999886
No 68
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=91.43 E-value=22 Score=38.39 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCcEEEEcCCCCCCCCCCCC----CCcceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEec
Q 002602 357 EFHTCAVTLSGDLYTWGDGIHNLGLLGQV----SEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFG 428 (902)
Q Consensus 357 ~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g----~~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG 428 (902)
..|+++.- ++++|.||.-.+.+|.+..- .....|.-.+|.+.+.+ +-+.|++++-. .+.|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~g-n~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWG-NQMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEEC-cEEEEec
Confidence 45776655 78999999654445555432 22345555556555444 34568877764 4788888
No 69
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.039 Score=67.76 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCCeEEEEecCCEEEEEEcCCcEEEEeCCCCCCCCCC--CCcccccceEe-ecCCCCCEEEEEecCcEEEEEEcCCcEEE
Q 002602 295 VLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHG--VEADVSYPKLI-DALNGSNIHMVACGEFHTCAVTLSGDLYT 371 (902)
Q Consensus 295 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g--~~~~~~~P~~V-~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~ 371 (902)
..+++.|.+-.+..++|..+|++|.|-....--|... .......|..- -.+.+.+|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3467778777888899999999999987654333321 12223334322 25677899999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCc--ceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCC
Q 002602 372 WGDGIHNLGLLGQVSEI--SHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTF 432 (902)
Q Consensus 372 WG~n~~~~GqLG~g~~~--~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~ 432 (902)
|=+- .|.+-.. .+..-+++ ...+..+++.-|...|+++..++.-||-||---+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9433 1111111 11111222 2456778888888999999999999999995443
No 70
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=91.30 E-value=0.17 Score=48.29 Aligned_cols=50 Identities=26% Similarity=0.663 Sum_probs=40.5
Q ss_pred ccccccCCccccccc-ccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhh
Q 002602 648 DHSICSGCRNQFNFR-RRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIK 706 (902)
Q Consensus 648 d~s~C~~C~~~F~~~-r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~ 706 (902)
+...|..|..+|+|. ...+.|..|...+|..|... ....+.++|.-|+..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHH
Confidence 456899999999966 46899999999999999875 245889999999876
No 71
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.06 E-value=1.9 Score=40.85 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=57.8
Q ss_pred HhcCceEEEEec---CCCceeEEEEEeCCCCeEEEecCCcc------------eeEeccee--eeeecccCChhhhcCCC
Q 002602 21 LKKGTYLLKYGR---RGKPKFCPFRLSSDEKLLIWYAGKEE------------KQLKLSHV--SRIIPGQRTAVFQRYPQ 83 (902)
Q Consensus 21 L~~Gt~l~K~~r---~~kp~~r~f~l~~d~~~l~W~~~~~~------------~~i~l~~I--~eIr~G~~t~~f~~~~~ 83 (902)
|..|+.++=.++ +.|++.|++.|=++ .|+.....++ .+|.+++| .|.
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~--~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~-------------- 69 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQ--SIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH-------------- 69 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeec--eEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc--------------
Confidence 456666555554 35899999999988 4555432111 12333333 111
Q ss_pred CCCCCCeEEEEEcC-----ceeeEEeCCHHHHHHHHHHHHHHHH
Q 002602 84 PEKEYQSFSLIYRN-----RSLDLICKDKDEAELWFTALRALIS 122 (902)
Q Consensus 84 ~~~~~~~FSiiy~~-----rtLDLva~~~~e~~~Wv~gL~~Li~ 122 (902)
...+.++|.|.+++ .+--|.|.|.++-+.|+.-|+.+++
T Consensus 70 v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 70 VEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred cCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 23457899999965 3567999999999999999999986
No 72
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=88.86 E-value=1.8 Score=45.26 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHH-------HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 833 NQEPDVLRAQLE-------DLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 833 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
|+|+++|+.|.+ ++.++.+.+++++++...++++|..--..=+. ++.+++++.|...|+..
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 445666655543 55667777777788888888887766555543 56777877777776654
No 73
>PRK15396 murein lipoprotein; Provisional
Probab=86.76 E-value=1.9 Score=37.89 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+|.+|++||..|..|-++...+++..+..++. |.|||++-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~ra 65 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAARA 65 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 78899999999999988888888877765555 67888753
No 74
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=86.50 E-value=4 Score=47.98 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=65.2
Q ss_pred ecCCEEEEEEcCCcEEEEeCCCCCCCCCCCCccccc---ceEeecCCCCCEEEEEecC-cEEEEEEcCCcEEE-EcCCCC
Q 002602 303 CGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSY---PKLIDALNGSNIHMVACGE-FHTCAVTLSGDLYT-WGDGIH 377 (902)
Q Consensus 303 ~G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~---P~~V~~l~~~~I~~Va~G~-~hs~aLT~dG~Vy~-WG~n~~ 377 (902)
.|.....+|+.+|++|.= +|...+... -+.|... ..+.+|++|. ....+||.+|.||. -|-.
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~nG~vf~R~GVs-- 256 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTENGAVFYREGVS-- 256 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCC--CccceEeecCcceEEEEeeCCcEEEEeccc--
Confidence 455666778888888742 222222111 1222211 2588999998 77889999999854 4544
Q ss_pred CCCCCCCCCCcceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEE
Q 002602 378 NLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFT 426 (902)
Q Consensus 378 ~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~ 426 (902)
.+.+.|..-. ....|+.. ..++.|+.|....-+||.+|.||.
T Consensus 257 RqNp~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 257 RQNPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccCCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEE
Confidence 3444443222 22333332 239999999999999999999974
No 75
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=86.36 E-value=0.65 Score=59.79 Aligned_cols=46 Identities=33% Similarity=0.864 Sum_probs=36.2
Q ss_pred ccccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhc
Q 002602 650 SICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLN 708 (902)
Q Consensus 650 s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~ 708 (902)
..|..|. .-..++|||+.||.+||..|... ..+..|||..|+....
T Consensus 6 ~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~----------~~~~i~~~~~~~~~~~ 51 (1598)
T KOG0230|consen 6 NVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS----------PETSIRVCNECRGQWE 51 (1598)
T ss_pred cchhccc---cccccCCCCcccCceeccccCCC----------Cccceeehhhhhhhcc
Confidence 4577777 44568899999999999999943 2248999999998754
No 76
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.30 E-value=6.6 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCCeEEEEEcC-ceeeEEeCCHHHHHHHHHHHHH
Q 002602 87 EYQSFSLIYRN-RSLDLICKDKDEAELWFTALRA 119 (902)
Q Consensus 87 ~~~~FSiiy~~-rtLDLva~~~~e~~~Wv~gL~~ 119 (902)
...+|.|...+ +++=|.|++.++++.|+..|+.
T Consensus 70 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 35789998744 8999999999999999999874
No 77
>PHA01750 hypothetical protein
Probab=86.04 E-value=1.5 Score=36.55 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=33.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
.++.++|...|+-|+++++.|-+..+.++.+.++|++
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999875
No 78
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.99 E-value=2 Score=36.26 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=31.4
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
-+++||..|..|.||++.+|.+.+.|.++-+++..|-.--+.
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888888877766655444333
No 79
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.75 E-value=8.9 Score=32.55 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 836 PDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
++.|..+|+.|=+.|+.+..|=..+.+++.....-=+-=.+|..+|..=|+++..+||.|-.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45566666666666666666666665555444333333345677778888999999998753
No 80
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.35 E-value=11 Score=35.39 Aligned_cols=84 Identities=20% Similarity=0.367 Sum_probs=51.2
Q ss_pred eeEEEEEeCCCCeEEEecCCcc------eeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC--ceeeEEeCCHH
Q 002602 37 KFCPFRLSSDEKLLIWYAGKEE------KQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN--RSLDLICKDKD 108 (902)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~~~~~------~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~--rtLDLva~~~~ 108 (902)
-.|.|-+=.|.+-+++.....+ ..|++++.-.|+.=..+++. ++...+-.+-|=|.|.+ ++|-|.|++.+
T Consensus 20 W~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi--~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ 97 (112)
T cd01242 20 WKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVY--RADAKEIPKIFQILYANEARDLLLLAPQTD 97 (112)
T ss_pred ceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHee--ecCcccCCeEEEEEeCCccceEEEEeCCch
Confidence 3444555455244455432211 23555443333333333332 34445556889999966 89999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002602 109 EAELWFTALRALIS 122 (902)
Q Consensus 109 e~~~Wv~gL~~Li~ 122 (902)
|.+.||..|..-|.
T Consensus 98 ek~kWV~~L~~~~~ 111 (112)
T cd01242 98 EQNKWVSRLVKKIP 111 (112)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 81
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=82.98 E-value=3.9 Score=37.24 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=52.9
Q ss_pred HhcCceEEEEecCCCceeEEEEEeCCCCeEEEec------CCcce-----eEecceeeeeecccCChhhhcCCCCCCCCC
Q 002602 21 LKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYA------GKEEK-----QLKLSHVSRIIPGQRTAVFQRYPQPEKEYQ 89 (902)
Q Consensus 21 L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~------~~~~~-----~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~ 89 (902)
|.+-..|+|+. +|+||.|.|.|=.| .|+... .+..+ .|+|++|.-... .|+-.. .
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnD--lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~~~~---~--- 68 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTD--VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFRIHN---K--- 68 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeecc--EEEEEEeeeccCccccccceeEEEEhHHheecch-----hhhccc---c---
Confidence 44556788998 45899999999999 444443 11122 488877743222 122210 0
Q ss_pred eEEEEEcCceeeEEeCCHHHHHHHHHHHHHHH
Q 002602 90 SFSLIYRNRSLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 90 ~FSiiy~~rtLDLva~~~~e~~~Wv~gL~~Li 121 (902)
.++|.-+.|.+..|...|+.-++.|-
T Consensus 69 ------~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 69 ------NGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ------CCceEEEEecCHHHHHHHHHHHHHHh
Confidence 23677778999999999999987764
No 82
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=82.30 E-value=36 Score=40.49 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=69.2
Q ss_pred ecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCcceeeeeeeccCCCCccEEEEeecC-CcceeeeeCCeE-EEeccCCC
Q 002602 355 CGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGP-WHTAAITSAGKL-FTFGDGTF 432 (902)
Q Consensus 355 ~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~VscG~-~hs~aLt~~G~V-y~wG~n~~ 432 (902)
.|.....||+.+|++|.= .|..-.......+. .+. + ...+.+|++|. .-..+|+.+|.| |-.|-..+
T Consensus 190 ~g~~~awAI~s~Gd~y~R------tGvs~~~P~GraW~--~i~-~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR------TGVSVDRPCGRAWK--VIC-P--YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe------ccccCCCCCCceee--ecC-C--CCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence 667778899999999863 11111111111111 111 1 11588999999 667899999987 56787777
Q ss_pred CCCCCCCCCCCcccccccccccCeEEEEEecCceeEEEEeecccccCCcccCCCcEEE
Q 002602 433 GALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFT 490 (902)
Q Consensus 433 GQLG~g~~~~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~ 490 (902)
.+.|..-. .+..|+... .++.|+.|.....+|+ .+|.||.
T Consensus 259 Np~GdsWk-dI~tP~~a~-----~~v~iSvGt~t~Wald------------ndg~lwf 298 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQAL-----EPVCISVGTQTLWALD------------NDGNLWF 298 (705)
T ss_pred CCCCchhh-hccCccccc-----ceEEEEeccceEEEEe------------cCCcEEE
Confidence 77766533 344444432 2889999988888888 7888875
No 83
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.91 E-value=6.2 Score=43.68 Aligned_cols=49 Identities=24% Similarity=0.252 Sum_probs=38.5
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
.++||++.|.|+.-.++|++.++.|+++.+..++.+.-+++|.+||..-
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3567788888888888888888888888888888888888888885443
No 84
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.65 E-value=11 Score=35.16 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=43.0
Q ss_pred ceeEEEEEeCCCCeEEEecCCc----ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEE--cC----ceeeEEeC
Q 002602 36 PKFCPFRLSSDEKLLIWYAGKE----EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIY--RN----RSLDLICK 105 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~~----~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy--~~----rtLDLva~ 105 (902)
-|.|+|.|. | ..|.++..+. +..+.|....-++. ++...+...|+|-. .. ++.-|-|+
T Consensus 20 ~KrrwF~lk-~-~~L~YyK~kee~~~~p~i~lnl~gcev~----------~dv~~~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 20 YKQYWFTFR-D-TSISYYKSKEDSNGAPIGQLNLKGCEVT----------PDVNVAQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred heeEEEEEe-C-CEEEEEccchhcCCCCeEEEecCceEEc----------ccccccccceEEEEecCCccCCeEEEEECC
Confidence 567778887 4 5787776443 33344422211111 11111233455555 22 89999999
Q ss_pred CHHHHHHHHHHHHH
Q 002602 106 DKDEAELWFTALRA 119 (902)
Q Consensus 106 ~~~e~~~Wv~gL~~ 119 (902)
|++|++.|+..++.
T Consensus 88 sEeqya~Wmaa~rl 101 (106)
T cd01237 88 NEKQYAKWMAACRL 101 (106)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999874
No 85
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=81.29 E-value=38 Score=36.67 Aligned_cols=62 Identities=21% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCcEEEEe-CCC-CCCCCCCCCc----c-cccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCC
Q 002602 305 SKHAVLVTKQGQIFSWG-EGS-GGKLGHGVEA----D-VSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 305 ~~hs~~Lt~dG~Vy~wG-~N~-~GQLG~g~~~----~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n 375 (902)
..|+++. -++++|.|| .|+ .|.+..-..- . -..|..--.+++ +-..|++++- ....|.+|.-
T Consensus 80 YGHtvV~-y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~-gn~MyiFGGy 148 (392)
T KOG4693|consen 80 YGHTVVE-YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVW-GNQMYIFGGY 148 (392)
T ss_pred cCceEEE-EcceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEE-CcEEEEecCh
Confidence 4677666 467899998 333 3433321111 1 112222112221 2356776665 5678988853
No 86
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=80.40 E-value=3 Score=38.76 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=60.0
Q ss_pred eeEEEEEeCCCCeEEEecC---CcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-ceeeEEeCCHHHHHH
Q 002602 37 KFCPFRLSSDEKLLIWYAG---KEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN-RSLDLICKDKDEAEL 112 (902)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~~---~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLva~~~~e~~~ 112 (902)
+.|+|+|=|+ .|-|+.. ++..-|.+.+|.+|..- |.+ .+.+.|..|..++ +-+=|-|.|+-++..
T Consensus 21 Q~Ry~~LfPN--RLE~~~~~~~~~~eLi~M~~i~~V~~e-----~~~----iK~~~CI~ik~k~~~k~vlt~~d~i~l~q 89 (116)
T cd01240 21 QTRYFKLYPN--RLELYGESEANKPELITMDQIEDVSVE-----FQQ----IKEENCILLKIRDEKKIVLTNSDEIELKQ 89 (116)
T ss_pred HHHHheeCcc--eeeecccccccCCcEEEeehhhhcchh-----hee----eccCceEEEEEcCCceEEEecCCcHHHHH
Confidence 4588999998 7889873 23345888999998754 222 4678899999965 779999999999999
Q ss_pred HHHHHHHHHHccc
Q 002602 113 WFTALRALISEDN 125 (902)
Q Consensus 113 Wv~gL~~Li~~~~ 125 (902)
|..-|+.....++
T Consensus 90 W~~elr~a~r~Sq 102 (116)
T cd01240 90 WKKELRDAHRESQ 102 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887655443
No 87
>PRK14161 heat shock protein GrpE; Provisional
Probab=80.24 E-value=10 Score=38.80 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=54.6
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
...+.+-+.+.-+.+.+|+..|+.++++|+.+......+++.++|+.+.-..-+.+-+. -+.+++++-.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~-~~~~~~LLpv~Dn 81 (178)
T PRK14161 10 EQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAI-ATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 34566777777788888999999999999999999999999988888877666555443 4666666655554
No 88
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.21 E-value=2.1 Score=33.59 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=25.8
Q ss_pred hhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHh
Q 002602 820 VIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQ 851 (902)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (902)
.--|.|+.-|+.|.+|.++|++||..|+.+.+
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578888888888899999988888887754
No 89
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=80.03 E-value=8 Score=31.77 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
.|.+|-+||..|..|-.++..++.-++..+ ..|++||++-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v----~~ak~EAaRA 43 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV----QAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 466677777777777777777777666533 4677888754
No 90
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=79.89 E-value=4.2 Score=45.57 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=70.5
Q ss_pred cccHHHHHHHHhcCc--e--EEEEecCCCceeEEEEEeCCCCeEEEecCCcc-------------eeEecceeeeeeccc
Q 002602 11 ERDTEQAVRVLKKGT--Y--LLKYGRRGKPKFCPFRLSSDEKLLIWYAGKEE-------------KQLKLSHVSRIIPGQ 73 (902)
Q Consensus 11 ~~~~~~~l~~L~~Gt--~--l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~~~-------------~~i~l~~I~eIr~G~ 73 (902)
+-..|||+++||+-- + =+||-|.-.|+++.=.+-.+ +-|...... +++..+.=.+.++=+
T Consensus 145 ~AtHdeAVqaLKraGkeV~levKy~REvtPy~kk~sivs~---vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k~IpLK 221 (506)
T KOG3551|consen 145 DATHDEAVQALKRAGKEVLLEVKYMREVTPYFKKESIVSE---VGWEDPAPQSPSLGGSEDSPSPKHINFRKDRKTIPLK 221 (506)
T ss_pred hcchHHHHHHHHhhCceeeeeeeeehhcchhhccCccccc---cCcCCCCccCcccCCCCCCCCCCcccccccccccchh
Confidence 335789999998753 2 35777777787775444433 678763211 112221111111112
Q ss_pred CChhhhcCCCCCCCCCeEEEEEcC--ceeeEEeCCHHHHHHHHHHHHHHHHcc
Q 002602 74 RTAVFQRYPQPEKEYQSFSLIYRN--RSLDLICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 74 ~t~~f~~~~~~~~~~~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
-+-+-|+.....+|.+||-|--.+ .||=|-|+|.+||+.|+..|.+-+...
T Consensus 222 m~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~l 274 (506)
T KOG3551|consen 222 MAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTL 274 (506)
T ss_pred hHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhH
Confidence 222334445568899999998855 899999999999999999987755443
No 91
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.22 E-value=10 Score=44.16 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh--------hhHHHHHHHHHHHhcCcCcc
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK--------NKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 897 (902)
....|.+|+.+|.+|.+.|+++-+.+.+..+...+++++|+.-++.|..+ ....+..|..|+.||+.+..
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33445666666666666676666666666666667777777665544442 22355667777888866654
No 92
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=78.03 E-value=5.9 Score=52.09 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=45.7
Q ss_pred CCCeEEeecCccEE-EEEecCCcEEEEecCCCCCCCCCCCCCccceeeecCCCCCCEEEEEecCCEEEEEEcCC
Q 002602 518 DISFCKVACGHSIT-IALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKS 590 (902)
Q Consensus 518 ~~~I~~Ia~G~~ht-laLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G 590 (902)
...|+.|++-..|. +|||.+|++|..=.-.+-..-.+.......++|..+ .+..|..+....+|.+.++-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 35789999988865 689999999986433222221121112233444432 5678999999988888776444
No 93
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=77.30 E-value=6.2 Score=46.74 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=59.0
Q ss_pred CceEEEEecCCCceeEEEEEeCCCCeEEEec-------CCcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEE-
Q 002602 24 GTYLLKYGRRGKPKFCPFRLSSDEKLLIWYA-------GKEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIY- 95 (902)
Q Consensus 24 Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~-------~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy- 95 (902)
...+.|+....+-+.|+|.+..+ .+.|.- ....+.+.+.+|..|.+- ... .......||.|-.
T Consensus 380 ~G~l~k~~~~~~wk~ry~~l~~~--~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv-----~~~--~~~~~~~~~~i~~~ 450 (478)
T PTZ00267 380 GGYLYKYSSDMRWKKRYFYIGNG--QLRISLSENPENDGVAPKSVNLETVNDVFPV-----PEV--YSQKHPNQLVLWFN 450 (478)
T ss_pred ceEEeccCCCcchhhheEEecCC--ceEEEeccccccCCCCCccccHHHhcccccc-----cHH--hcCCCCceEEEEec
Confidence 34577887766678889999766 444432 112345666666555322 111 1123477899977
Q ss_pred cCceeeEEeCCHHHHHHHHHHHHHHH
Q 002602 96 RNRSLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 96 ~~rtLDLva~~~~e~~~Wv~gL~~Li 121 (902)
.++.+-++|++++|++.|+..|+..+
T Consensus 451 ~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 451 NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 44888899999999999999998765
No 94
>PRK14153 heat shock protein GrpE; Provisional
Probab=77.27 E-value=15 Score=38.16 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=51.7
Q ss_pred hhhhhHhh--hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 821 IFEYSKQT--NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 821 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
-.++||.- ++.+.+|+.+|++|+++|+.+......+++.++|+.+.-..-+.+-+. -+.+++++-.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 95 (194)
T PRK14153 25 EAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTDN 95 (194)
T ss_pred HHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 34556544 457889999999999999999999999999999888876665555444 3666766666554
No 95
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.18 E-value=5.7 Score=34.51 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=32.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQE 873 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
...+++|+..|++|++.|+++-+.++.+++++++..+.--.+|++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~ 63 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVARE 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345678888888888888888888888888885544444344443
No 96
>PF15406 PH_6: Pleckstrin homology domain
Probab=76.76 E-value=6 Score=36.87 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=47.6
Q ss_pred EEeCCCCeEEEecC-----CcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHHHHHHHHH
Q 002602 42 RLSSDEKLLIWYAG-----KEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDEAELWFTA 116 (902)
Q Consensus 42 ~l~~d~~~l~W~~~-----~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~Wv~g 116 (902)
+-+....-|+.++. .+...|.|.|+.+|...-.. -|++-.+++..-+.|.+.+|++.||..
T Consensus 43 wAsqTGKGLLF~~K~~dka~P~GiinLadase~~~~g~~--------------kF~f~~~G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 43 WASQTGKGLLFFSKAEDKASPSGIINLADASEPEKDGSN--------------KFHFKIKGHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhccCceEEEEeccccccCCcceEehhhccccccCCCc--------------eEEEEeCCceeeeecCCHHHhccHHHH
Confidence 33445455555552 23455999999999876655 377777888999999999999999998
Q ss_pred HHH
Q 002602 117 LRA 119 (902)
Q Consensus 117 L~~ 119 (902)
|++
T Consensus 109 lk~ 111 (112)
T PF15406_consen 109 LKA 111 (112)
T ss_pred hhc
Confidence 863
No 97
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.10 E-value=19 Score=35.13 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=34.4
Q ss_pred CCCCCeEEEEEcC--ceeeEEeCCHHHHHHHHHHHHHHHHcc
Q 002602 85 EKEYQSFSLIYRN--RSLDLICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 85 ~~~~~~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
..+.+.|.|-+++ .+..|-|++++..+.|+.-|+.||.+-
T Consensus 77 ~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 77 KGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred CCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 3457899998855 688899999999999999999999764
No 98
>PRK14160 heat shock protein GrpE; Provisional
Probab=75.92 E-value=16 Score=38.40 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=53.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
....|++.++.|.+++.+|+.+++.|+.+......+++-++|+.+.-...+..-+ ..+.+++++-.+.+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlDn 123 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLDN 123 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3566777888899999999999999999999999999999888887776666544 35666666655543
No 99
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.90 E-value=19 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=25.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIR 886 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (902)
..-|..|+.+|+.+++.|+.+.+..+.++...+.+...+-.-.+.+..+.|..||=+.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555444444444444433333334444444444444333
No 100
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.65 E-value=15 Score=36.21 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=23.8
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
.+.....-|+++..++-.+|.+|.+|...++.+|.++..++.++-..
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555554443
No 101
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.60 E-value=18 Score=37.42 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH----HHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI----AQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
.|.+++..|..+.+.|+.+...+..+++..+++.++.... -.+|.. .-|.-.+.|.+||+.|
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~---~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEID---FLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 3444555555555555555555544555544444443322 233333 3444466777777754
No 102
>PRK14155 heat shock protein GrpE; Provisional
Probab=75.39 E-value=12 Score=39.23 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=39.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
+.|.+++.+|++++++|+.+......+++.++|+.++-...+.+-+. -+.+++++..+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~ 73 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAI-QKFARDLLGAA 73 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHH
Confidence 56677888888888888888888888888887777765555544433 34444444433
No 103
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.30 E-value=20 Score=33.19 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 836 PDVLRAQLEDLTRKSQFLEVELERTSRKL-KETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
+..-+++...+.+.....+.||+.+...| +||-.|+++|---+-+++.=...|..||++
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778888888999999999999 999999988875444444444555555554
No 104
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=75.16 E-value=17 Score=34.73 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCc
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGS 896 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (902)
+...+..+.+.++-..|+..-..|+......+.=|+....+...|...|.+|......-..-|+-|+++|..|-
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777788888888888889999999999999999999999888888999999876653
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.50 E-value=6.6 Score=47.61 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=56.2
Q ss_pred cCCCchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH------HHhhhhHHHH-HHH
Q 002602 814 DLANSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQE------EAEKNKAAQE-VIR 886 (902)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~ 886 (902)
+++.-+..++.+.+.-+...-|+.+|+++++++.++...+--|-|++.-+++..-+--.+ |-.+..++|| |++
T Consensus 466 ~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq 545 (1118)
T KOG1029|consen 466 DITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQ 545 (1118)
T ss_pred ccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999998887777777766666543322222 2222333444 345
Q ss_pred HHHHhcCcCc
Q 002602 887 SLTAQARPGS 896 (902)
Q Consensus 887 ~~~~~~~~~~ 896 (902)
.|.+||.+++
T Consensus 546 ~ikdqldels 555 (1118)
T KOG1029|consen 546 AIKDQLDELS 555 (1118)
T ss_pred HHHHHHHHHH
Confidence 5666665544
No 106
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=73.32 E-value=1.8 Score=50.51 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred ceeEEEEEeCCCCeEEEec-CCc----ceeEecceeeeee-cccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHH
Q 002602 36 PKFCPFRLSSDEKLLIWYA-GKE----EKQLKLSHVSRII-PGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDE 109 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~-~~~----~~~i~l~~I~eIr-~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e 109 (902)
-+-|+|.|+.- .|.+.. +.+ .-.|+|+.|+.|+ .|++- ..-.....|-|+..++|+=|-|+|..-
T Consensus 754 W~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr-------~~rslpKAFEIFTAD~T~ILKaKDeKN 824 (851)
T KOG3723|consen 754 WKTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR-------RDRSLPKAFEIFTADKTYILKAKDEKN 824 (851)
T ss_pred hccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh-------hhcccchhhheeecCceEEeecccccC
Confidence 35578999876 455533 222 2349999999998 55411 111223568899999999999999999
Q ss_pred HHHHHHHHHHHHHccccc
Q 002602 110 AELWFTALRALISEDNRC 127 (902)
Q Consensus 110 ~~~Wv~gL~~Li~~~~~~ 127 (902)
|+.|+..|+-.|++++++
T Consensus 825 AEEWlqCL~IavAHa~~r 842 (851)
T KOG3723|consen 825 AEEWLQCLNIAVAHAKER 842 (851)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998866
No 107
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.91 E-value=1.1e+02 Score=33.51 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=75.7
Q ss_pred EeeccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccCCCCeEEEEecC---CEEEEEEcCCcEEEEeCC
Q 002602 247 EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGS---KHAVLVTKQGQIFSWGEG 323 (902)
Q Consensus 247 ~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~~~~I~~Ia~G~---~hs~~Lt~dG~Vy~wG~N 323 (902)
.+.+.||.||.=++.. |.+|+-+.. . -.+..+..|. -|.+++..||..|.+-..
T Consensus 67 vapapdG~VWft~qg~--gaiGhLdP~--------t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~ 123 (353)
T COG4257 67 VAPAPDGAVWFTAQGT--GAIGHLDPA--------T-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTG 123 (353)
T ss_pred cccCCCCceEEecCcc--ccceecCCC--------C-------------CceEEEecCCCCCCceEEECCCCCeeEecCc
Confidence 5678999999877664 667665421 1 1233333332 477788888888877544
Q ss_pred -CCCCCCCCCCcccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCCCcceeeeeeeccCCCC
Q 002602 324 -SGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQMEG 402 (902)
Q Consensus 324 -~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~ 402 (902)
.-++++.........|.. .+.+-+.-.+.+++..|.||.-|.+. .+|.|.-........|...
T Consensus 124 ~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaPq------ 187 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAPQ------ 187 (353)
T ss_pred ceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccCC------
Confidence 333443322211111211 22334456678899999999988763 2344332222222222211
Q ss_pred ccEEEEeecCCcceeeeeCCeEEEe
Q 002602 403 LQISSICCGPWHTAAITSAGKLFTF 427 (902)
Q Consensus 403 ~~I~~VscG~~hs~aLt~~G~Vy~w 427 (902)
-+.-.-+++|-+|.||.-
T Consensus 188 -------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 -------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred -------CCCCcceEECCCCcEEEE
Confidence 133466788999999875
No 108
>PRK14148 heat shock protein GrpE; Provisional
Probab=72.90 E-value=20 Score=37.31 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=49.3
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.+.++.|.+++..|+++++.|+.+......+++.++|+++.-...+.+-+. .+.+++++-.+.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~-~~~~~~LLpV~Dn 102 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGI-EKFAKELLPVIDS 102 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 444667889999999999999999999999999998888877766665443 5667776665554
No 109
>PRK14154 heat shock protein GrpE; Provisional
Probab=72.52 E-value=18 Score=37.89 Aligned_cols=57 Identities=2% Similarity=0.116 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
|.+++..|+++++.|+.+......+++.++|+.+.-..-+.+-+. .+.+++++-.+.
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~-e~~~~~LLpVlD 113 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS-KQLITDLLPVAD 113 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 345566666666666666666666666666665554444433332 344444444433
No 110
>PRK14162 heat shock protein GrpE; Provisional
Probab=72.39 E-value=19 Score=37.44 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=45.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.-.+.|.+++..|+.++++|+.+......+++.++|+.+.-..-+.+.+. .+.+++++-.+.+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 101 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYES-QSLAKDVLPAMDN 101 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 33445677888888888888888888888888888888777666665543 4666666655554
No 111
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=72.21 E-value=12 Score=33.45 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNK 879 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+|.+|++||..|..|-++.+.+++..+..++ -|.|||++-.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~----aAk~EA~RAN 65 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIY----AAKSEANRAN 65 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999999999999988888887766444 4566776533
No 112
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.03 E-value=34 Score=32.39 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=39.8
Q ss_pred eEEEEecCCC-ceeEEEEEeCCCCeEEEec----CCcceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC
Q 002602 26 YLLKYGRRGK-PKFCPFRLSSDEKLLIWYA----GKEEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN 97 (902)
Q Consensus 26 ~l~K~~r~~k-p~~r~f~l~~d~~~l~W~~----~~~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~ 97 (902)
.|+-|..+-+ .|+++++|+.. .|.-+. .+--|.|+|++|..|..-... . ......+.||-|+...
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK--~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~---~--~~~~~~~hcFEi~T~~ 74 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSK--AITLYQEESGSRYYKEIPLAEILSVSSNNGD---S--VLAKHPPHCFEIRTTT 74 (117)
T ss_pred eEEEEecCccceeeeEEEecCC--eEEEEEcCCCCeeeEEeehHHheEEeccCCC---c--CCCCCCCcEEEEEecC
Confidence 3555655433 44556677665 554444 345678999999999853222 1 1225568899998844
No 113
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=71.85 E-value=11 Score=37.69 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=48.2
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
..+....+.|.+++..|+.++++|+.+...+..+++.+.+++++-..-+...+ .-+.++++|..+.
T Consensus 7 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~-~~~~~~~ll~v~D 72 (165)
T PF01025_consen 7 EEEDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYA-LEKFLKDLLPVLD 72 (165)
T ss_dssp TCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44566777888999999999999999999999999999888876665554432 2344555555444
No 114
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.47 E-value=27 Score=34.60 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=17.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
.++.|+.++.+|++++..|+...+.++.++..+++++.
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 115
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.43 E-value=14 Score=39.06 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCEEEEEecCcEEEEEEcCCcEEEEcCC
Q 002602 348 SNIHMVACGEFHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 348 ~~I~~Va~G~~hs~aLT~dG~Vy~WG~n 375 (902)
.++..+.|-..+.++||.+|.+|+|--.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4788899999999999999999999543
No 116
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.15 E-value=65 Score=36.01 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=41.8
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQ 891 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (902)
...|+-.-+.+|+.+|++..++|++..| ||.+-++++++-..--..|..+.++.-||.++=..+
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~E----eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTEE----ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3456667788999999998888888655 444444444444444455666666776776665543
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.13 E-value=7.5 Score=40.21 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
++..+++.+++.|+.+.+..+.++.+++.+++++
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555544444
No 118
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.10 E-value=85 Score=41.03 Aligned_cols=217 Identities=15% Similarity=0.103 Sum_probs=110.5
Q ss_pred EEEEcCCcEEEEeCCCCCCCCCCCC--cccccceEeecCCCCCEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCCCCCCC
Q 002602 309 VLVTKQGQIFSWGEGSGGKLGHGVE--ADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVS 386 (902)
Q Consensus 309 ~~Lt~dG~Vy~wG~N~~GQLG~g~~--~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vy~WG~n~~~~GqLG~g~ 386 (902)
+-+|-|.++|.|-.|..+++--=++ ..+..-.++..-+|.-+-.| .|.++|...-+|+..|-..+ ....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~-~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFD-EFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEec-cccCcccc
Confidence 5689999999999988776643221 12222233332233333333 68899999999999885421 12222211
Q ss_pred CcceeeeeeeccCCCCccEEEEeecCCcceeee-eCCeEEEe----ccCCCCC-CCCC----CCCCCcccccccc--ccc
Q 002602 387 EISHWIPRKVSGQMEGLQISSICCGPWHTAAIT-SAGKLFTF----GDGTFGA-LGHG----DRSSTSVPREVET--LKE 454 (902)
Q Consensus 387 ~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt-~~G~Vy~w----G~n~~GQ-LG~g----~~~~~~~P~~V~~--l~~ 454 (902)
-... +..+.+|..|..|.+-.+-=++++ .+|.||-. +++-|++ +-.- ..-....|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222345667777776555445554 55655433 3344444 1110 1112223442221 224
Q ss_pred CeEEEEEecCceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCCCCCCC---------eeeeEEeeecCCCCeEEee
Q 002602 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEP---------RVVPLCVKVSDDISFCKVA 525 (902)
Q Consensus 455 ~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~---------~~~P~~v~~l~~~~I~~Ia 525 (902)
..|.+++.+....+..+- ...|.+-+|--+..|+-+.-.... ...-..+....-..|++|+
T Consensus 243 dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred CcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 578999998888777652 246777777555555433211000 0000001111112345543
Q ss_pred ------cCccEEEEEecCCc-EEEEec
Q 002602 526 ------CGHSITIALTATGQ-VFSMGS 545 (902)
Q Consensus 526 ------~G~~htlaLt~~G~-Vy~wG~ 545 (902)
.-+-|.+|+|..|. +|.=|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 33568999999995 666553
No 119
>PRK14143 heat shock protein GrpE; Provisional
Probab=71.10 E-value=22 Score=38.24 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=47.6
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
..+....|.+++..|+.+++.|+.+......+++.++|+.+.-..-+.. .+..+.++++|-.+.+
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 3444456778888888888888888888888888888888776666555 3446777777766654
No 120
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=70.58 E-value=6.5 Score=46.44 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=68.4
Q ss_pred HHHHHHHhcCceEEEEe-cCCCceeEEEEEeCCCCeEEEecCCcceeEecceeeeeecccCChhhhcCCC-CCCCCCeEE
Q 002602 15 EQAVRVLKKGTYLLKYG-RRGKPKFCPFRLSSDEKLLIWYAGKEEKQLKLSHVSRIIPGQRTAVFQRYPQ-PEKEYQSFS 92 (902)
Q Consensus 15 ~~~l~~L~~Gt~l~K~~-r~~kp~~r~f~l~~d~~~l~W~~~~~~~~i~l~~I~eIr~G~~t~~f~~~~~-~~~~~~~FS 92 (902)
+-.-+.||.| +++|+. ++|.+..|++.|=.| .+++...++ .+.. ..-++|.--.......... .+.-...|-
T Consensus 267 ~PsreLiKEG-~l~Kis~k~~~~qeRylfLFNd--~~lyc~~r~--~~~~-~k~~~r~~~s~~~~~v~~~~~~~~~~tF~ 340 (623)
T KOG4424|consen 267 SPSRELIKEG-QLQKISAKNGTTQERYLFLFND--ILLYCKPRK--RLPG-SKYEVRARCSISHMQVQEDDNEELPHTFI 340 (623)
T ss_pred CcHHHHhhcc-ceeeeeccCCCcceeEEEEehh--HHHhhhhhh--hccc-ceeccceeeccCcchhcccccccCCceEE
Confidence 3344566666 456774 459999999999888 344544332 1111 1122222222222221111 133356776
Q ss_pred EEEcCceeeEEeCCHHHHHHHHHHHHHHHHcccccC
Q 002602 93 LIYRNRSLDLICKDKDEAELWFTALRALISEDNRCK 128 (902)
Q Consensus 93 iiy~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~~~~ 128 (902)
+-..+|+|+|-|.+.++-+.||..++..|..+...+
T Consensus 341 ~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 341 LTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCR 376 (623)
T ss_pred EecccceEEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999887775
No 121
>PRK14156 heat shock protein GrpE; Provisional
Probab=70.42 E-value=20 Score=36.71 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.+.+++..|+++++.|+.+......+++.++|+.+.-...+..-+. -+.+++++-.+.+
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~-~~~~~~LLpVlDn 89 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRS-QDLAKAILPSLDN 89 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4677788899999999999999999999988888877766655443 5667776666554
No 122
>PRK14139 heat shock protein GrpE; Provisional
Probab=70.12 E-value=23 Score=36.55 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=40.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
+.|.+++..|+.++++|+.+......+++.++|++++-..-+...+. -+.+++++-.+.
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~D 93 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI-ESFAESLLPVKD 93 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 44667788888888888888888888888888877766655554443 345555554443
No 123
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=70.01 E-value=23 Score=36.84 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
..+.+++..|++|+++|+.+......+++.++|+++.-..-|. ..+.-+.|++++-++.+
T Consensus 39 ~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 39 EEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445899999999999999999999999888888877666665 44445777777666654
No 124
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=69.99 E-value=3.2 Score=51.44 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=58.4
Q ss_pred eeEEEEEeCCCCeEEEecC----CcceeEecceeeeeecc-cCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHHHH
Q 002602 37 KFCPFRLSSDEKLLIWYAG----KEEKQLKLSHVSRIIPG-QRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDEAE 111 (902)
Q Consensus 37 ~~r~f~l~~d~~~l~W~~~----~~~~~i~l~~I~eIr~G-~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~ 111 (902)
+.|+|.|+++..+|.+|.. +.+..|+|.+|+.|-.+ .++ .++.--|-+=...|+-.|.|.|..+|.
T Consensus 1651 k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~---------vdekgffdlktt~rvynf~a~nin~Aq 1721 (1732)
T KOG1090|consen 1651 KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT---------VDEKGFFDLKTTNRVYNFCAQNINLAQ 1721 (1732)
T ss_pred ccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc---------cCccceeeeehhhHHHHHHhccchHHH
Confidence 5689999999999999983 45778999999888772 122 222223444446688999999999999
Q ss_pred HHHHHHHHHH
Q 002602 112 LWFTALRALI 121 (902)
Q Consensus 112 ~Wv~gL~~Li 121 (902)
.|+.+|+..|
T Consensus 1722 qWve~iqscl 1731 (1732)
T KOG1090|consen 1722 QWVECIQSCL 1731 (1732)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 125
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.92 E-value=45 Score=31.80 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=32.3
Q ss_pred CCCCCeEEEEEcC-ceeeEEeCCHHHHHHHHHHHHHHHHc
Q 002602 85 EKEYQSFSLIYRN-RSLDLICKDKDEAELWFTALRALISE 123 (902)
Q Consensus 85 ~~~~~~FSiiy~~-rtLDLva~~~~e~~~Wv~gL~~Li~~ 123 (902)
.+-..-|.|...+ +..=|.|+|.+|++.||..|+...+.
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3445668888865 88999999999999999999987764
No 126
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.48 E-value=49 Score=30.90 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=35.3
Q ss_pred CchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 817 NSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
......+..|..++.|.+|-..|++.+.+|..+-..+..-+.+++.++.||..
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777776666666666666666666666666543
No 127
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.70 E-value=13 Score=32.68 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=27.9
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
-+++||..|..|.+|+..++++-+.|.++-+++..|.+--+.+
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777777776666666666655554444433
No 128
>PRK14141 heat shock protein GrpE; Provisional
Probab=68.64 E-value=20 Score=37.68 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
.|.+++..|+.+++.|+.+......+++.++|+++.-...+.+-+. .+.+++++..+.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~-~~~~~dLLpViD 92 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGI-AGFARDMLSVSD 92 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHh
Confidence 3455666666666666666666666666666666555544444332 345555544443
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=68.54 E-value=22 Score=35.11 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=11.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQ 842 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~ 842 (902)
+.+|.+.|..|-.||.+++.+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~ 57 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQ 57 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 130
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.33 E-value=14 Score=40.88 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=44.0
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQE 873 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 (902)
.+.|..+-..+.||-.+|+.|+++|.++|...++|-|.+.+.+.||.+.-.+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667889999999999999999999999999999999999876443
No 131
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.68 E-value=26 Score=30.42 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=32.6
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
+-.+...|..|+..|+.+...|+..-+.+..+.++++ ..+.+.++=|++|-.+|++
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~--------------~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLK--------------QERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhc
Confidence 3345556666666666666666655555555555544 2356677777777766654
No 132
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.52 E-value=37 Score=32.28 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=55.4
Q ss_pred HhcCceEEEEecCCCceeEEEEEeCCCCeEEEecCCcce----eEecceeee-----eeccc--CChhhhcCCCCCCCCC
Q 002602 21 LKKGTYLLKYGRRGKPKFCPFRLSSDEKLLIWYAGKEEK----QLKLSHVSR-----IIPGQ--RTAVFQRYPQPEKEYQ 89 (902)
Q Consensus 21 L~~Gt~l~K~~r~~kp~~r~f~l~~d~~~l~W~~~~~~~----~i~l~~I~e-----Ir~G~--~t~~f~~~~~~~~~~~ 89 (902)
+..|..=+|---+++|+.|+..|=+- .|+-+..+.+. ...+.+... |..-. +++. ..-.-..
T Consensus 5 ~~DGelk~k~~~~~k~k~RyiFLFDk--~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~-----~~~~~~~ 77 (116)
T cd01223 5 LLDGEVRIKASEDQKTKLRYIFLFDK--AVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEG-----RDTRWKY 77 (116)
T ss_pred ccCCceEEeEeccCCCceeEEEEecc--eEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCccc-----CCcceEE
Confidence 34566444444457899999888665 45555432221 122222211 11111 1100 0011234
Q ss_pred eEEEEEcC--ceeeEEeCCHHHHHHHHHHHHHHHHc
Q 002602 90 SFSLIYRN--RSLDLICKDKDEAELWFTALRALISE 123 (902)
Q Consensus 90 ~FSiiy~~--rtLDLva~~~~e~~~Wv~gL~~Li~~ 123 (902)
+|-|+..+ ..+.|.|+++|+.+.|+..|..-++.
T Consensus 78 ~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 78 GFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 78888855 67999999999999999999877764
No 133
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=67.19 E-value=5.1 Score=50.49 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=62.2
Q ss_pred CCCeEEeecCccEEEEEecCCcEEEEecCCCCCCCCCCCCCc---cceeeecCCCCCCEEEEEecCCEEEEEEcCCcEEE
Q 002602 518 DISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK---FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYT 594 (902)
Q Consensus 518 ~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~---~P~~v~~~l~~~~V~~Ia~G~~hs~aLT~~G~Vyt 594 (902)
..+|+.|.+-++..+||..+|++|.|-+.+.--|-.+-...+ .|.....-+.+++|+.+++..-..-++|++|.|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 456888988899999999999999999988776665433221 23333334578899999999999999999999999
Q ss_pred Ee
Q 002602 595 WG 596 (902)
Q Consensus 595 WG 596 (902)
|=
T Consensus 453 Wl 454 (3015)
T KOG0943|consen 453 WL 454 (3015)
T ss_pred HH
Confidence 93
No 134
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.00 E-value=34 Score=33.06 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=48.5
Q ss_pred ecCCCceeEEEEEeCCCCeEEEecCCcceeEec-----ceeeeeecccCChhhhcC--CCCCCCCCeEEEEEc----C--
Q 002602 31 GRRGKPKFCPFRLSSDEKLLIWYAGKEEKQLKL-----SHVSRIIPGQRTAVFQRY--PQPEKEYQSFSLIYR----N-- 97 (902)
Q Consensus 31 ~r~~kp~~r~f~l~~d~~~l~W~~~~~~~~i~l-----~~I~eIr~G~~t~~f~~~--~~~~~~~~~FSiiy~----~-- 97 (902)
++|-..+.+++.|=.| .|+...++.+..+.+ .+-.+|..+..... .-- .........|.|..- +
T Consensus 22 ~~k~~~~~vylfLFnD--lLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~-~~~~~~~~~~~~~~F~ltLl~N~~gk~ 98 (125)
T cd01221 22 RKKLKARTIYLFLFND--LLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQ-KIPLGSNLVGRPNLFLLTLLRNADDKQ 98 (125)
T ss_pred cccccCCcEEEEEecc--eEEEEEecCCCeEEEEeeccccceEEeecccccc-cccccccccCCCceEEEEeeccCCCCE
Confidence 4444556688888888 566655444444333 22222222211100 000 001134678988761 1
Q ss_pred ceeeEEeCCHHHHHHHHHHHH
Q 002602 98 RSLDLICKDKDEAELWFTALR 118 (902)
Q Consensus 98 rtLDLva~~~~e~~~Wv~gL~ 118 (902)
+.|-|.|+++.|.+.|+..|.
T Consensus 99 ~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 99 AELLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEEEECCCHHHHHHHHHhcC
Confidence 679999999999999999874
No 135
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=66.41 E-value=15 Score=36.72 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=37.7
Q ss_pred hhhHhhhhhhhhhHHHHHHH--HHHHHHHHhHHHHHHHHHHHhHHHHHHHHH---HHHhhhhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQ--LEDLTRKSQFLEVELERTSRKLKETTQIAQ---EEAEKNKAAQEVI 885 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 885 (902)
.+-.|-|--+++|++|--.+ .++|+.|...-++..++....+-||=.+|. .||.||.++.|--
T Consensus 69 ~DC~k~dPe~~eEmeK~~~~LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTC 136 (176)
T PF06364_consen 69 TDCGKHDPEVSEEMEKNFVDLLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETC 136 (176)
T ss_pred HhhccCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 44455555667777665532 344555555555555555555556655554 7999998877643
No 136
>PRK14158 heat shock protein GrpE; Provisional
Probab=66.25 E-value=34 Score=35.59 Aligned_cols=63 Identities=8% Similarity=0.070 Sum_probs=44.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
...+.|.+++..|+.++++|+.+......+++.++|+.+.-...+.+-+. .+.+++++-.+.+
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~-~~~~~~lLpV~Dn 102 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGN-ESLILEILPAVDN 102 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 34456778888888888888888888888888888877766665555433 4556665555443
No 137
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.19 E-value=15 Score=34.01 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
..+||+-|+.||++|..+-..++.|-..++. -+.-|.++.|.+||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~----------------~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT----------------LASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hCCHHHHHHHHHhcc
Confidence 3699999999999999998888777655543 566778888887764
No 138
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.10 E-value=23 Score=42.22 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=34.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
.++|.+.|..|.+|+.+|+.+|+.|+...+....+..+++++.++.
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888888888877777776666666555443
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.94 E-value=26 Score=38.36 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=35.3
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
+..++.++..++.|.+++++++.+++.++++.+.+..+|+...+.++
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777788888888888888888888877777777776665
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.66 E-value=28 Score=37.64 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=14.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
...|.+|+..|++|++.|+.+.++++..+...++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~ 84 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQ 84 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333
No 141
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=65.44 E-value=2.1e+02 Score=35.03 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=31.1
Q ss_pred EEecCCcEEEEecCCCCCCCCCCCCCccceeeecCC--CCCCEEEEEecCCEEEEEEcCCcEEEEeC
Q 002602 533 ALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNI--KHRYIEDIACGSYHIAVVSSKSEVYTWGK 597 (902)
Q Consensus 533 aLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l--~~~~V~~Ia~G~~hs~aLT~~G~VytWG~ 597 (902)
+..-+|.||+.|.... .... .. ...-++. ....+..+..+..+..+..-+|++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~----~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL----SS--VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc----ce--EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445899999995432 1110 00 1111111 11123334456677777778999999985
No 142
>PHA02713 hypothetical protein; Provisional
Probab=65.02 E-value=1.9e+02 Score=35.16 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=13.6
Q ss_pred cCcEEEEEEcCCcEEEEcCC
Q 002602 356 GEFHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 356 G~~hs~aLT~dG~Vy~WG~n 375 (902)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344455568999999865
No 143
>PRK14151 heat shock protein GrpE; Provisional
Probab=64.40 E-value=32 Score=35.23 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
.|.+++..|+.++++|+.+......+++.++|+.+.-...+.+-+. .+.+++++-.+.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~-~~~~~~LLpv~D 81 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFAL-EKFAGDLLPVVD 81 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 4456667777777777777777777777777666655554444333 344555544443
No 144
>PLN02153 epithiospecifier protein
Probab=64.35 E-value=2.4e+02 Score=31.55 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=12.4
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 002602 358 FHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 358 ~hs~aLT~dG~Vy~WG~n 375 (902)
.|++++ .++++|++|..
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566555 57899999864
No 145
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.21 E-value=14 Score=40.94 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
..+||.+|.+||-+|.+||++.-.|-+++++.+.++
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 356899999999999999999988888888876543
No 146
>PHA03098 kelch-like protein; Provisional
Probab=63.90 E-value=1.8e+02 Score=34.85 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=11.9
Q ss_pred cEEEEEEcCCcEEEEcCC
Q 002602 358 FHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 358 ~hs~aLT~dG~Vy~WG~n 375 (902)
.|+++ .-+|+||++|..
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 34444 448999999865
No 147
>PRK14147 heat shock protein GrpE; Provisional
Probab=63.53 E-value=34 Score=34.95 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
|.+++..|+++++.|+.+......+++.++|+.+.-..-+.+-+. .+.+++++-.+
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~-~~~~~~lLpv~ 78 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN-EKLLGELLPVF 78 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 556667777777777777766667776666665544444333322 34444444333
No 148
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.23 E-value=24 Score=32.82 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=45.0
Q ss_pred chhhhhhhHhhh--hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH---HHHHHhhhhHHHHHHHHHHHhc
Q 002602 818 SEVIFEYSKQTN--DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI---AQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 818 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
+..+.+.+++.+ ..+.+++..|-.+.+.|..+.+.+..+-.+..+++.+++.- +.+--++.+.-|+-|+.|..++
T Consensus 11 ~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 11 PEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666553 45666666666666666666666666666666666655542 3333334455566666666655
Q ss_pred Cc
Q 002602 893 RP 894 (902)
Q Consensus 893 ~~ 894 (902)
++
T Consensus 91 ~~ 92 (108)
T PF02403_consen 91 KE 92 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 149
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.02 E-value=31 Score=39.44 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=56.1
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh--------------hhhHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAE--------------KNKAAQEVIRS 887 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 887 (902)
++.+...-..|-.|+..||+-+..|+-.|+.++.+.|++..+|+.+-..-.+|-. ..+|..|+|.-
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5667777778889999999999999999999999999999999877766655542 34667777776
Q ss_pred HHHhc
Q 002602 888 LTAQA 892 (902)
Q Consensus 888 ~~~~~ 892 (902)
|..+|
T Consensus 379 lrkel 383 (502)
T KOG0982|consen 379 LRKEL 383 (502)
T ss_pred HHHHH
Confidence 66544
No 150
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.88 E-value=71 Score=35.60 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=37.4
Q ss_pred CchhhhhhhHhhhhhh----------hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 817 NSEVIFEYSKQTNDNF----------NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
..+.+.+.|+...+-. --|-..|.=||+.|+.+++.++..+-.++++++|-
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK 138 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREK 138 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677776655443 34445566699999999999999999998888654
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.85 E-value=46 Score=37.31 Aligned_cols=44 Identities=27% Similarity=0.281 Sum_probs=19.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
+++-.+.|.+|+.+|+.+.+.|.++.+.++.|+++++++-++.|
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~ 98 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW 98 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 152
>PRK11637 AmiB activator; Provisional
Probab=62.72 E-value=30 Score=40.43 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
.+++..++.+++++..+.+..+.+|+..++++.
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333443444444444444444443333
No 153
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.68 E-value=57 Score=28.11 Aligned_cols=61 Identities=30% Similarity=0.355 Sum_probs=44.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH---HHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT---QIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
-|..|+.-||.+...+.+|.+..+.++..+.+.=+.|+ ..|-+|..|.|+-. .+|..+|++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~---e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEEN---EALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 36788999999999999999999999988888666554 44556666665544 444445443
No 154
>PRK11637 AmiB activator; Provisional
Probab=62.37 E-value=32 Score=40.28 Aligned_cols=46 Identities=7% Similarity=0.174 Sum_probs=20.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
+++.-+.+.+++++++.++++++.+....+.+|..+.++++++-.-
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~ 90 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRK 90 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444433
No 155
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.26 E-value=19 Score=33.58 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
...|.+|+..++++++.|+++-+.++.||++++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456778888888888888888888888887775
No 156
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=62.06 E-value=3.3 Score=53.67 Aligned_cols=34 Identities=32% Similarity=0.978 Sum_probs=29.8
Q ss_pred ccccccccccCCcccccccccccccccCCceeecCC
Q 002602 644 VSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLC 679 (902)
Q Consensus 644 v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~C 679 (902)
..+.....|..|++.|.-.|++||| ||++||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 3445566899999999999999999 999999999
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.06 E-value=45 Score=41.71 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=52.0
Q ss_pred hhhhhhhHhhhhhhhhh-HHH-------HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 819 EVIFEYSKQTNDNFNQE-PDV-------LRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
....+-|.++=+.|.+| +.+ ++..|+.|+.+.++|-.+|++++++.++.-..|..=++|.+.|+|-=+.|..
T Consensus 535 ~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 535 QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666 232 3335677888888888899888888888777777667788887776666665
Q ss_pred hcCc
Q 002602 891 QARP 894 (902)
Q Consensus 891 ~~~~ 894 (902)
.++.
T Consensus 615 R~~~ 618 (717)
T PF10168_consen 615 RVDR 618 (717)
T ss_pred HHHH
Confidence 4443
No 158
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.86 E-value=51 Score=31.08 Aligned_cols=84 Identities=13% Similarity=0.187 Sum_probs=52.9
Q ss_pred EEEEec-CCCceeEEEEEeCCCCeEEEecCC--c------ceeEecce--eeeeecccCChhhhcCCCCCCCCCeEEEEE
Q 002602 27 LLKYGR-RGKPKFCPFRLSSDEKLLIWYAGK--E------EKQLKLSH--VSRIIPGQRTAVFQRYPQPEKEYQSFSLIY 95 (902)
Q Consensus 27 l~K~~r-~~kp~~r~f~l~~d~~~l~W~~~~--~------~~~i~l~~--I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy 95 (902)
|.+++. +||.+.|+|.|=.. .|+.+... + +..|.++. |..+.-|.. +. ....-..+|-|+.
T Consensus 8 l~~~s~~~g~~q~R~~FLFD~--~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~---~~---~~~~~knafkl~~ 79 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLFDH--QMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKM---FS---SGHTIKNSLKIYS 79 (109)
T ss_pred EEEEecccCCcccEEEEEecc--eEEEEecccccCCcEEEEEEEEcccEEEEECCCCcc---cc---CCceeEEEEEEEE
Confidence 345543 58999999999765 77777631 1 12244432 233333321 10 0112345788888
Q ss_pred cC--ceeeEEeCCHHHHHHHHHHHH
Q 002602 96 RN--RSLDLICKDKDEAELWFTALR 118 (902)
Q Consensus 96 ~~--rtLDLva~~~~e~~~Wv~gL~ 118 (902)
.+ +.+.+.|+++|+-..|+..|.
T Consensus 80 ~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 80 ESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHH
Confidence 44 789999999999999998874
No 159
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.78 E-value=29 Score=28.46 Aligned_cols=40 Identities=8% Similarity=0.286 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
-|-.|+.++.+.+.+++.+-++...++++.++.+++-+.|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888899999999999999999998888777665
No 160
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.40 E-value=23 Score=39.91 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
++..|+.|++.|+.+.+....+++++..++.+|
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 161
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=61.31 E-value=17 Score=34.89 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=18.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELE 858 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (902)
++|.+-|..|.|||++|+.++..+.++.+.+..+.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554444443333
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.93 E-value=39 Score=32.38 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVEL 857 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (902)
-+--|+..||.++..|..+-+....||
T Consensus 27 ~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 27 RLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 163
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=60.86 E-value=1.1e+02 Score=38.53 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=42.0
Q ss_pred ecCcEEEEEEcCCc-EEEEcCCCCCCCCCCCCCCcce-eeeeeeccCCCCccEEEEeecCCcceeeeeCCe--EEEeccC
Q 002602 355 CGEFHTCAVTLSGD-LYTWGDGIHNLGLLGQVSEISH-WIPRKVSGQMEGLQISSICCGPWHTAAITSAGK--LFTFGDG 430 (902)
Q Consensus 355 ~G~~hs~aLT~dG~-Vy~WG~n~~~~GqLG~g~~~~~-~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~--Vy~wG~n 430 (902)
.++...++++.+|+ |+++|.+ |-+-.-...+. ..|..+. ..+..|..|+|-..|.+.-++++. +|.++..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 34455666666665 4566655 11111111111 3444443 146789999999999888888885 5777665
Q ss_pred CC
Q 002602 431 TF 432 (902)
Q Consensus 431 ~~ 432 (902)
..
T Consensus 87 ~~ 88 (933)
T KOG1274|consen 87 EE 88 (933)
T ss_pred Cc
Confidence 44
No 164
>PRK09039 hypothetical protein; Validated
Probab=60.55 E-value=43 Score=38.03 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
..+|..|++||+.|+.|+...+.+|...+++.+++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~ 170 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRES 170 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444333
No 165
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.18 E-value=46 Score=31.03 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=50.8
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
-+...+.|.+-++-|.--+..|++|-.++.+++..++.+|-+.-+.++. .-+|+.|..
T Consensus 28 ~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 28 EKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566788888899999999999999999999999999999999999988 888885443
No 166
>PRK14144 heat shock protein GrpE; Provisional
Probab=59.64 E-value=45 Score=34.80 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
|.+++..|++++++|+.+......+++.++|+++.-...+.+.+. -+.+++++-.+.+
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 566778888888888888888888888888887777666666554 4566666555544
No 167
>PRK14145 heat shock protein GrpE; Provisional
Probab=59.55 E-value=53 Score=34.24 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=43.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.+.|.+++.+|+.++++|+.+......+++.++|+++.-..-+.+.+. -+.+++++-.+.+
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-e~~~~~LLpV~Dn 107 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGK-EQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 445777888888888888888888888888888877766665555444 3566666555544
No 168
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.46 E-value=21 Score=44.54 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=45.3
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHH-HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLED-LTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
|.--+++..|.+||++|+.|++. -..|...++..++++.|=++|-. .- =-+|.++..++-+.+.+||..|
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~-~t--wEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEIT-VT--WEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH-hH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788899999999998887 44455555555555555444321 11 1246777777777777777765
No 169
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.06 E-value=37 Score=42.99 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHH
Q 002602 106 DKDEAELWFTALRAL 120 (902)
Q Consensus 106 ~~~e~~~Wv~gL~~L 120 (902)
|.++.+.|..-...+
T Consensus 39 ~~~~i~~~l~~~~e~ 53 (782)
T PRK00409 39 DFEEVEELLEETDEA 53 (782)
T ss_pred CHHHHHHHHHHHHHH
Confidence 444445544444433
No 170
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.94 E-value=23 Score=42.29 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=64.6
Q ss_pred CchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 817 NSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
..+.++|+..+.-.-|..|+.+|+.|+++|+.+.+..+..+.....++.+......+=-|+..-+|--||.|..+++.+
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777889999999999999999999999999999999999877777766666777777788887766554
No 171
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=58.91 E-value=6.7 Score=43.59 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=41.6
Q ss_pred ecCCCcceeeeeccc-ccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCC-CCCCee--echhhh
Q 002602 629 VCGSNFTAAICLHKG-VSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPE-INKPYR--VCDDCF 704 (902)
Q Consensus 629 acG~~hT~aI~~~~~-v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~-~~~p~R--VC~~C~ 704 (902)
.||+...+.+..... ....---.|.-|...|.+. |..|.+||.- ++.-...+..+ ....+| +|+.|.
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~r~e~C~~C~ 259 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES-------KHLAYLSLEHDAEKAVLKAETCDSCQ 259 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC-------CceeeEeecCCCCCcceEEeeccccc
Confidence 466666554432211 1222334688888776554 7888888852 23222222221 123566 999999
Q ss_pred hhhccCCC
Q 002602 705 IKLNTTSE 712 (902)
Q Consensus 705 ~~l~~~~~ 712 (902)
.-++-+..
T Consensus 260 ~YlK~~~~ 267 (305)
T TIGR01562 260 GYLKILYQ 267 (305)
T ss_pred cchhhhcc
Confidence 98876543
No 172
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=58.87 E-value=23 Score=40.39 Aligned_cols=51 Identities=31% Similarity=0.347 Sum_probs=32.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHH-----------------HHHHHHHHHh---HHHHHHHHHHHHhhhh
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFL-----------------EVELERTSRK---LKETTQIAQEEAEKNK 879 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~ 879 (902)
|+.+.+|+++||.+++.-+.+.+.. |.|.|-+++| ++.-+..|+|+++|.|
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455578999998887655555433 4555555544 3444677888888866
No 173
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.73 E-value=38 Score=34.25 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH--HHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKL--KETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
..|+..|+.|+..|+..+..++.||..+.+.+ +|......+-.++++...+=+..|
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666544 333333333333344444333333
No 174
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=57.76 E-value=18 Score=34.52 Aligned_cols=47 Identities=15% Similarity=0.372 Sum_probs=29.0
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
.--.++.|-.+.+.|..++..|+.+++.+.++++....++++.+.++
T Consensus 64 aQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666677777777777776666666666666655555554433
No 175
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.46 E-value=38 Score=34.58 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=36.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHH--------HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLE--------DLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
..++.+.+.-|++|+.+|++.++ ..+.....++.+|+++..+++.-++-.+-|-+..| .++||.+.
T Consensus 86 ~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K--~~~lr~~~ 159 (177)
T PF07798_consen 86 QREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK--WDTLRWLV 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 34444555555555666555333 34445556667777777777766665555544333 24555543
No 176
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.45 E-value=34 Score=28.18 Aligned_cols=37 Identities=8% Similarity=0.298 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
-|..+|+.|.++|..|...-.....+++..+..+..|
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666665555444433
No 177
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=57.45 E-value=2.8e+02 Score=30.07 Aligned_cols=186 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCccEEEEeecCCcceeeeeC--CeEEEeccCCCCCCCCCCCCCCcccccccccccCeEEEEEecCceeEEEEeeccc
Q 002602 399 QMEGLQISSICCGPWHTAAITSA--GKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGK 476 (902)
Q Consensus 399 ~l~~~~I~~VscG~~hs~aLt~~--G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~ 476 (902)
+.....|.-+++|..|++=+=+- |..+.-=.-..+|...=...+...--....-..+++-+|..+..+-++-.|-...
T Consensus 5 ~~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 5 PPTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC
Q ss_pred ccCCcccCCCcEEEecCCCCCCCCCCCCCCeeeeEEeeecCCCCeEEeecCccEEEEEecCCcEEEEecCCCCCCCCCCC
Q 002602 477 TSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGS 556 (902)
Q Consensus 477 ~s~~~~~~~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~ 556 (902)
+-....+.-.--|..-.++.|-.-.-+......+.........+-+-+.--..+-+.-+.+|.|++|--..+--.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~----- 159 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT----- 159 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc-----
Q ss_pred CCccceeeecCCCCCCEEEEEec--CCEEEEEEcCCcEEEE
Q 002602 557 TGKFPTRIEGNIKHRYIEDIACG--SYHIAVVSSKSEVYTW 595 (902)
Q Consensus 557 ~~~~P~~v~~~l~~~~V~~Ia~G--~~hs~aLT~~G~VytW 595 (902)
....+-....|.+++.. +.-.++.++.|..|+|
T Consensus 160 ------~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW 194 (311)
T KOG0315|consen 160 ------HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVW 194 (311)
T ss_pred ------cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEE
No 178
>PRK14146 heat shock protein GrpE; Provisional
Probab=57.04 E-value=48 Score=35.06 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=39.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
..|.+++..|+++++.|+.+......+++.++|+.+.-..-+...+. .+.+++++-.|.+
T Consensus 57 ~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~-e~~~~~lLpv~Dn 116 (215)
T PRK14146 57 TSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAV-KSLVSGFLNPIDN 116 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 34556777788888888888777778887777777766666555443 3555555554443
No 179
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=57.00 E-value=2.4 Score=40.79 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhh
Q 002602 857 LERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~ 877 (902)
|...++..++....|.+||++
T Consensus 69 l~~aq~~a~~~~~~A~~eA~~ 89 (131)
T PF05103_consen 69 LIQAQETADEIKAEAEEEAEE 89 (131)
T ss_dssp ---------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 333444444444555554443
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.68 E-value=28 Score=39.04 Aligned_cols=45 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 845 DLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
.++.+......+|++.++.+++-=..-..|..+.|+--+.+..++
T Consensus 243 ~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 243 DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333344556666666666666555
No 181
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.61 E-value=45 Score=42.10 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHHH
Q 002602 106 DKDEAELWFTALRALI 121 (902)
Q Consensus 106 ~~~e~~~Wv~gL~~Li 121 (902)
+.++.+.|..-+...+
T Consensus 39 ~~~~i~~~l~~~~e~~ 54 (771)
T TIGR01069 39 SVEESKEIIIKLTALG 54 (771)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4555555555444443
No 182
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=56.60 E-value=31 Score=44.43 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHhHHH-HHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 835 EPDVLRAQLEDLTRKSQFLE-VELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
+..+|+.+++.|+.+...+. .+...++++.+++...+.+|.+|.+-++.-++.|..+|+..
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433222222 55666888899999999999999999999998888887654
No 183
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.38 E-value=19 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
..+||+-|+.+|.+|..+-.+++.|=..+++
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999998888888777665
No 184
>PRK14140 heat shock protein GrpE; Provisional
Probab=56.35 E-value=69 Score=33.26 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
|.+++.+|+.++..|+.+......+++.++|+.+.-..-+.+ .+.-+.+++++-.+.+
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~-~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEK-YRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888887776655443 3345667776666554
No 185
>PRK14163 heat shock protein GrpE; Provisional
Probab=56.23 E-value=54 Score=34.63 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=39.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
.+.|.+++..|+.+++.|+.+......+.+.++|+.+.-...+.+-+- -+.+++++-.|.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-~~~~~~LLpVlD 101 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAV-ANLLSELLPVLD 101 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHh
Confidence 355777888888888888888888888888887777665554444332 345555544443
No 186
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.80 E-value=34 Score=34.27 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=18.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
+.+-|+-|.+|+.+|+.+++.|+.+.+.+..+++.++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544444444444443
No 187
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=55.55 E-value=73 Score=30.63 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=15.1
Q ss_pred EEeCCHHHHHHHHHHHH
Q 002602 102 LICKDKDEAELWFTALR 118 (902)
Q Consensus 102 Lva~~~~e~~~Wv~gL~ 118 (902)
|.|++++|++.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 56899999999999886
No 188
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=55.31 E-value=31 Score=36.43 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=53.4
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------hHHHHHHHHHHHHhhhhHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR---------------KLKETTQIAQEEAEKNKAAQ 882 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 882 (902)
...-.++|++-|+++..++..++.+-+..+++-+..-..|+++++ .+++...-+..|--|.++-+
T Consensus 41 ~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ 120 (230)
T PF03904_consen 41 ENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQN 120 (230)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 334568999999999999999998877777777777777766443 34444444444555555556
Q ss_pred HHHHHHHHhcCcCc
Q 002602 883 EVIRSLTAQARPGS 896 (902)
Q Consensus 883 ~~~~~~~~~~~~~~ 896 (902)
| |+-+.++++.|.
T Consensus 121 e-i~k~r~e~~~ml 133 (230)
T PF03904_consen 121 E-IKKVREENKSML 133 (230)
T ss_pred H-HHHHHHHHHHHH
Confidence 6 666666666554
No 189
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.88 E-value=45 Score=29.11 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
+.|.....++...|+.|+.+....+.++..++++++++-
T Consensus 22 ekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 22 EKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555666666666666666665555443
No 190
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.56 E-value=70 Score=34.99 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=18.8
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELE 858 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (902)
.+.++...+.+.+++.+++..++.++++.+.....+.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555554444444
No 191
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=54.22 E-value=1.8e+02 Score=29.55 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=40.0
Q ss_pred cCCCchhhhhhhHhhhhhhhhhHHHHHHHHHHHH--HHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 814 DLANSEVIFEYSKQTNDNFNQEPDVLRAQLEDLT--RKSQFLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
|-........+-.=.+|+..+|+..|+.++...+ ..-+.+..+|++++.++..--..-.++..
T Consensus 43 G~~~~~~f~k~Y~FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~ 107 (168)
T PF06102_consen 43 GEFNEDLFRKNYGFLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARKRKDREREV 107 (168)
T ss_pred cccCHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434444445555568888999999999988875 44556667777777666544443333333
No 192
>PRK14157 heat shock protein GrpE; Provisional
Probab=54.16 E-value=55 Score=34.85 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
.-|..++.+|++++..|+.+......|.+.++|+.+.=...+.+.+- -+.+++++-.|
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~-~~~~~dLLpvl 137 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGI-IDVLTALLPAL 137 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 34666777777777777777777777777777776655555544432 34444444444
No 193
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=54.14 E-value=24 Score=30.49 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=31.7
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
..+|.++-..-.+|-..|++||.+|.++.+.+..+++++.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777778888888888888888888888888764
No 194
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.11 E-value=13 Score=41.51 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=42.6
Q ss_pred ecCCCcceeeeecccccccccccccCCcccccccccccccccCCceeecCCCCccccccccCCC-CCCCeeechhhhhhh
Q 002602 629 VCGSNFTAAICLHKGVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPE-INKPYRVCDDCFIKL 707 (902)
Q Consensus 629 acG~~hT~aI~~~~~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~-~~~p~RVC~~C~~~l 707 (902)
.||+...+.+...+.....---.|.-|...|.|. |..|.+||. +.+.....+..+ ..-..-+|+.|..-+
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 4777765554322222233344688888776654 788999985 222222222211 112346899999988
Q ss_pred ccCCC
Q 002602 708 NTTSE 712 (902)
Q Consensus 708 ~~~~~ 712 (902)
+-+..
T Consensus 263 K~~~~ 267 (309)
T PRK03564 263 KILYQ 267 (309)
T ss_pred eeccc
Confidence 76543
No 195
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=53.94 E-value=72 Score=33.08 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
-.|..|....++.|+.+.|.++.+||.++|++++|-.+
T Consensus 66 a~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~i 103 (272)
T KOG4552|consen 66 APEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVI 103 (272)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555567788889999999999999999987543
No 196
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.81 E-value=15 Score=24.63 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 002602 834 QEPDVLRAQLEDLTRKS 850 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~ 850 (902)
+||.+||..|.+|+++.
T Consensus 1 ~E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 1 REMNRLRNRISDLERQL 17 (23)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 58889999888888774
No 197
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.79 E-value=47 Score=34.06 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhc
Q 002602 870 IAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
.-++..+|.++.++.++.+..++
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 198
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=53.24 E-value=18 Score=30.62 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHH-------HHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 842 QLEDLTRKSQFLEVELERTSRKLKE-------TTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
+++.|..+.+..+.+|+++++++.. --.++..|-+|....++-|..|..+|..|
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555556666665542 12456778888888888888888877654
No 199
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.95 E-value=79 Score=30.33 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=38.1
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHH---HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQL---EDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNK 879 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+.-...|...-+.|.+|+.+|-..+ +.+..+...++.+++.++++.+-+..|-+|=++...
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3344555666666777777766644 344455566667777777777777777766555443
No 200
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=52.74 E-value=55 Score=31.25 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=15.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHh
Q 002602 871 AQEEAEKNKAAQEVIRSLTAQ 891 (902)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~ 891 (902)
..++-.||.-+||++..|..|
T Consensus 50 isdkIdkCeC~Kelle~Lk~q 70 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQ 70 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT--
T ss_pred HHHHHHhchhhHHHHHHHhcC
Confidence 567888999999999999874
No 201
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=52.72 E-value=12 Score=44.06 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+.+|+..|| ||+.|++|.+.+++|++++++++++
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 345555666 6666666666666666666555543
No 202
>PHA02047 phage lambda Rz1-like protein
Probab=52.58 E-value=61 Score=29.55 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
+|.+.|.+|.+.++.+....++.+++.++|.+
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae 65 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTN 65 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666655555555555533
No 203
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=52.30 E-value=23 Score=41.51 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=9.9
Q ss_pred HhhhhHHHHHHHHHHHhcC
Q 002602 875 AEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~ 893 (902)
.+|.+.-.+-|+.|.+|++
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555553
No 204
>PF15404 PH_4: Pleckstrin homology domain
Probab=51.98 E-value=93 Score=32.15 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=18.0
Q ss_pred cCceEEEEecCCCceeEEEEEeCC
Q 002602 23 KGTYLLKYGRRGKPKFCPFRLSSD 46 (902)
Q Consensus 23 ~Gt~l~K~~r~~kp~~r~f~l~~d 46 (902)
.|-...|-++.+.=+.+++-|.+.
T Consensus 2 sG~LY~K~~khs~F~~~~vvL~~G 25 (185)
T PF15404_consen 2 SGYLYQKPRKHSTFKKYFVVLIPG 25 (185)
T ss_pred CceeeecCCCCCCceEEEEEEeCC
Confidence 567777777777777788888876
No 205
>PRK09343 prefoldin subunit beta; Provisional
Probab=51.27 E-value=43 Score=32.09 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=35.9
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
.......|+..++-+...++.|+.+.+.++.++++++++++++..
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678888888888889999999999999999998888764
No 206
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=51.07 E-value=45 Score=34.34 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=54.2
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH----------------HHhHHHHHHHHHHHHhhhhHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERT----------------SRKLKETTQIAQEEAEKNKAAQEVIR 886 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (902)
+....-+.-..+-|.+||+.|...+++|...+.++... ...+++|...-.||--||..--+|.-
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566667778899999999999999999999988432 35688888888888888887555555
Q ss_pred HHHHhcC
Q 002602 887 SLTAQAR 893 (902)
Q Consensus 887 ~~~~~~~ 893 (902)
-|-.||.
T Consensus 85 lLReQLE 91 (182)
T PF15035_consen 85 LLREQLE 91 (182)
T ss_pred HHHHHHH
Confidence 5554443
No 207
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=50.77 E-value=39 Score=39.54 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=46.4
Q ss_pred CchhhhhhhHhhhh-hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH---HHHHhhhhHHHHHHHHHHHhc
Q 002602 817 NSEVIFEYSKQTND-NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIA---QEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 817 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 892 (902)
.+..+.+++++.|. ....++.+|-.+-++|..+.+.+..|..+.+|++.+...-. .+--++.|+.|+=|+.|.+++
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777752 22466777777777777777777777777777776532211 111123344555566665555
Q ss_pred Cc
Q 002602 893 RP 894 (902)
Q Consensus 893 ~~ 894 (902)
++
T Consensus 90 ~~ 91 (425)
T PRK05431 90 DE 91 (425)
T ss_pred HH
Confidence 44
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.77 E-value=55 Score=34.90 Aligned_cols=58 Identities=24% Similarity=0.198 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
+.+.++.+..+.|+.+.+....+.++++.+++.|+....|+-| +.|-+-+.+|..+++
T Consensus 45 ~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~~~~ 102 (225)
T COG1842 45 QALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLEDLAK 102 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHH
Confidence 3444455556688888999999999999999999988777766 445555666665443
No 209
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.59 E-value=62 Score=38.77 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=38.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
+...+-++-|.++...|+.+++.|+.+.+.++.+|+..+++.++--....+-.....++++=+..|..|+
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666776777777777777766666666555544444443344444444444444433
No 210
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=50.56 E-value=38 Score=37.42 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=14.8
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDL 846 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~ 846 (902)
.|++-|+.|.+|.++|+.+|+.|
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666655
No 211
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=50.54 E-value=86 Score=31.71 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=38.5
Q ss_pred hhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 820 VIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
-+.+-|.+..+.+.+++......-++..+..+..+.+|++.+++.++-+.-|++|+.+-
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666555554555555555677777777777777777777777654
No 212
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=50.48 E-value=40 Score=32.06 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=20.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
-+=+-|..-.+.|..+++.|+.+.+....+++++++++
T Consensus 66 l~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 66 LSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666555555555543
No 213
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=50.41 E-value=56 Score=29.49 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.+|+.+|+++.+.|+.+-...+.|++..+-+- =.||...+-....||..|-.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq------knee~~~~~sr~~V~d~L~q 80 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ------KNEENTRRLSRDSVIDQLQQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHhhccCCHHHHHHHHHH
Confidence 34455555555555555555555555443322 24677777778888887753
No 214
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.17 E-value=56 Score=32.76 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 845 DLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
.|..|...-+.|..+..+.++|...---.+|.|.|.|-++|-+|....|.
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56677777788888888888888888888899999999999999886554
No 215
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=50.16 E-value=5.1e+02 Score=30.84 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=33.3
Q ss_pred EEEEecCCEEEEEEcCCcEEEEeCCCCCCCCCCCCcccccceEeecCCCCCEEEEEecCcEEE-EEEcCCcEEEEcCC
Q 002602 299 QSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTC-AVTLSGDLYTWGDG 375 (902)
Q Consensus 299 ~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~-aLT~dG~Vy~WG~n 375 (902)
.-|.||..|.++.+..|..+.=-...+ +..+...|..|..+++--+ -=+.+|.++.|+.+
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~~f-----------------ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQGIF-----------------EKREKKFVLCVTFLENGDVITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEeecc-----------------ccccceEEEEEEEcCCCCEEeecCCceEEEEeCC
Confidence 347899999998887775553322111 1111123444444433322 23467889999875
No 216
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=49.92 E-value=39 Score=34.82 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=27.2
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
|..++.|+.|..|+.+|..+++.|..+.+..+.+.++-++...
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~ 133 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFN 133 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666667777777777777666666666666665555443
No 217
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=49.84 E-value=2.1e+02 Score=30.94 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=25.2
Q ss_pred ccceEeecCCCCCEEE-EEecCcEEEEE-EcCCcEEEEcCC
Q 002602 337 SYPKLIDALNGSNIHM-VACGEFHTCAV-TLSGDLYTWGDG 375 (902)
Q Consensus 337 ~~P~~V~~l~~~~I~~-Va~G~~hs~aL-T~dG~Vy~WG~n 375 (902)
..|+.+..-.+ .|+. +-|-+.|+++- ++++.|-.|-.-
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 44566654443 3444 46888888776 788999999543
No 218
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.60 E-value=1.2e+02 Score=31.31 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.6
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
-+++|.-.|.-|..|..+|+..|+....-...+-.++..+.++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998886655555555544444443
No 219
>PLN02153 epithiospecifier protein
Probab=49.45 E-value=4.2e+02 Score=29.64 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=11.5
Q ss_pred EEEEEEcCCcEEEEeC
Q 002602 582 HIAVVSSKSEVYTWGK 597 (902)
Q Consensus 582 hs~aLT~~G~VytWG~ 597 (902)
+++.+..++++|.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 3555566778999985
No 220
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.44 E-value=42 Score=31.13 Aligned_cols=44 Identities=11% Similarity=0.318 Sum_probs=31.8
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
+.....+.|.+.++.|...++.|+.+.+..+.+++++++++.|.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777778888877777663
No 221
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=49.28 E-value=63 Score=33.65 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH----HHHHHhhhhHHHHHHHHHHHhcC
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI----AQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
|..+|+.++..++.+.+..+.+|+.+.++++-+-.. ..-|-.|.++|.+-++.|..++.
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~ 181 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQ 181 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999998866544 44566777788777777766543
No 222
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=49.16 E-value=88 Score=30.70 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRK--SQFLEVELERTSRKLKETTQIA-QEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 890 (902)
-|..|++.++..++.|++. +......++++..+|+.|-... .+...+..++..+|.-+..
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ 133 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4667777777777777766 6666777777777777777666 4555555666666655543
No 223
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=48.75 E-value=45 Score=38.98 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred CchhhhhhhHhhhh--h-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH----HHHhhhhHHHHHHHHHH
Q 002602 817 NSEVIFEYSKQTND--N-FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQ----EEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 817 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 889 (902)
.+..+.+.+++.+- . +..++..|-.+-+.|..+.+.+..|..+..|++.+...-.. +=-++.|..|+-|+.|.
T Consensus 10 n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 89 (418)
T TIGR00414 10 NPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89 (418)
T ss_pred CHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 45566777777762 1 34667777777777777777777777777777765332211 11123345556666666
Q ss_pred HhcCcC
Q 002602 890 AQARPG 895 (902)
Q Consensus 890 ~~~~~~ 895 (902)
.+++++
T Consensus 90 ~~~~~~ 95 (418)
T TIGR00414 90 AALKAL 95 (418)
T ss_pred HHHHHH
Confidence 655543
No 224
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=48.73 E-value=1.7e+02 Score=27.42 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=47.3
Q ss_pred ceeEEEEEeCCCCeEEEecCCc---ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcCceeeEEeCCHHHHHH
Q 002602 36 PKFCPFRLSSDEKLLIWYAGKE---EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRNRSLDLICKDKDEAEL 112 (902)
Q Consensus 36 p~~r~f~l~~d~~~l~W~~~~~---~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~rtLDLva~~~~e~~~ 112 (902)
.+.|.|-|... -+|++..+.. +..|+++.-..|. ......|-|...+|+-.|..++ ..|..
T Consensus 27 ~kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~~l~v~--------------~k~~~~F~I~tp~RtY~l~d~~-~~A~~ 90 (104)
T PF14593_consen 27 AKKRQLILTDG-PRLFYVDPKKMVLKGEIPWSKELSVE--------------VKSFKTFFIHTPKRTYYLEDPE-GNAQQ 90 (104)
T ss_dssp EEEEEEEEETT-TEEEEEETTTTEEEEEE--STT-EEE--------------ECSSSEEEEEETTEEEEEE-TT-S-HHH
T ss_pred EEEEEEEEccC-CEEEEEECCCCeECcEEecCCceEEE--------------EccCCEEEEECCCcEEEEECCC-CCHHH
Confidence 57788888866 6888877432 4557775322222 2224579999999999988754 45889
Q ss_pred HHHHHHHHHHc
Q 002602 113 WFTALRALISE 123 (902)
Q Consensus 113 Wv~gL~~Li~~ 123 (902)
|++.++.++..
T Consensus 91 W~~~I~~~~~~ 101 (104)
T PF14593_consen 91 WVEAIEEVKKQ 101 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 225
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=48.54 E-value=1.1e+02 Score=27.73 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=40.7
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
++.+.+.|..++..|.+|+++-..-.+.|.+..+..+. ...+.+. =....+.++.+|+.|..
T Consensus 3 s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~-------~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDG-------QSSLLKKSRKLLKKLER 64 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 56788999999999999999988877777766544432 2222221 12234556666666654
No 226
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.43 E-value=1e+02 Score=32.47 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHHH
Q 002602 833 NQEPDVLRAQLEDL 846 (902)
Q Consensus 833 ~~~~~~~~~~~~~~ 846 (902)
.+|+++|+++..++
T Consensus 99 e~el~~l~~~l~~~ 112 (206)
T PRK10884 99 ENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 227
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=50 Score=32.71 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=39.8
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
...++.|++.-+-|...+++|+..++.|.++.+..+.++|..+++...+
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457778888888888888888888889998888888888888866544
No 228
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.25 E-value=1e+02 Score=31.96 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH-HhhhhHHHHHHHHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEE-AEKNKAAQEVIRSLTA 890 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 890 (902)
....|+.++..|+.+.+.++.++++++.+.+.+-.-..+. +..-|.-++-|+.|..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888999999999999998888877765544442 2223444555555554
No 229
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.24 E-value=7.9 Score=37.11 Aligned_cols=53 Identities=30% Similarity=0.653 Sum_probs=37.5
Q ss_pred cccccccCCccc-ccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhh
Q 002602 647 ADHSICSGCRNQ-FNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIK 706 (902)
Q Consensus 647 ~d~s~C~~C~~~-F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~ 706 (902)
.|...|..|.+. |..+ --|+|..|-.-+|..|...- .+- .++..+||..|-..
T Consensus 63 ~ddatC~IC~KTKFADG-~GH~C~YCq~r~CARCGGrv----~lr--sNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG-CGHNCSYCQTRFCARCGGRV----SLR--SNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccc-cCcccchhhhhHHHhcCCee----eec--cCceEEeccCCcHH
Confidence 444566677654 5432 35999999999999998753 222 45889999999543
No 230
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.22 E-value=80 Score=38.05 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=13.9
Q ss_pred EEEEEecCCEE-EEEEcCCcEEEE
Q 002602 573 IEDIACGSYHI-AVVSSKSEVYTW 595 (902)
Q Consensus 573 V~~Ia~G~~hs-~aLT~~G~VytW 595 (902)
|+.|.-|-... ++|+-||+|.--
T Consensus 246 IVGIDPGiTtgiAvldldGevl~~ 269 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLDL 269 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEee
Confidence 66666665443 456777776543
No 231
>PHA02713 hypothetical protein; Provisional
Probab=48.14 E-value=3.7e+02 Score=32.62 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=13.2
Q ss_pred CCcceeeeeCCeEEEeccC
Q 002602 412 PWHTAAITSAGKLFTFGDG 430 (902)
Q Consensus 412 ~~hs~aLt~~G~Vy~wG~n 430 (902)
..+..+..-+|+||.+|-.
T Consensus 342 R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhceeEEEECCEEEEECCc
Confidence 3344555668999999953
No 232
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.92 E-value=65 Score=33.94 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH---HHHHHHHHhhhhH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET---TQIAQEEAEKNKA 880 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 880 (902)
.||+.-+|+.++-|+...+.++.|+..++.-+.++ .+-|.|++.|+|-
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQ 142 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQ 142 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555554444333 3566777776643
No 233
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=47.35 E-value=28 Score=32.41 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEEEEcCc--eeeEEeCCHHHHHHHHHHHH
Q 002602 82 PQPEKEYQSFSLIYRNR--SLDLICKDKDEAELWFTALR 118 (902)
Q Consensus 82 ~~~~~~~~~FSiiy~~r--tLDLva~~~~e~~~Wv~gL~ 118 (902)
...++-..||-|+..++ ++=|.|.++++++.|+..+.
T Consensus 64 ~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 64 TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 33455667999999775 89999999999999998764
No 234
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.29 E-value=45 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=35.0
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
...-..|+..++.+...++.|+.+.+..+.+++++++++++++
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567778888888888999999999999999999988875
No 235
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.22 E-value=73 Score=38.34 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=12.4
Q ss_pred eEEeecCccEEEE-EecCCcEEEEe
Q 002602 521 FCKVACGHSITIA-LTATGQVFSMG 544 (902)
Q Consensus 521 I~~Ia~G~~htla-Lt~~G~Vy~wG 544 (902)
|+-|.-|-...+| |+-+|+|...-
T Consensus 246 IVGIDPGiTtgiAvldldGevl~~~ 270 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLDLE 270 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEeee
Confidence 5555555554443 45566655443
No 236
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.12 E-value=60 Score=28.24 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=11.4
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQF 852 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (902)
.|+..|..|.+|...|+.+.+.|++.-+.
T Consensus 29 eLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 29 ELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433333
No 237
>PRK14164 heat shock protein GrpE; Provisional
Probab=46.89 E-value=86 Score=33.26 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
++..|+.|+++|+.+......|.+.++|+.+.-...
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~ 113 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERERQA 113 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554444333
No 238
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.68 E-value=1e+02 Score=26.92 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=17.9
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
|-+.+--++.-|.+||+++..+......+..++.+..++++
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544444444444444444444444333
No 239
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=46.44 E-value=5.5 Score=32.12 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=17.5
Q ss_pred ccCCccccccc------ccccccccCCceeecCCC
Q 002602 652 CSGCRNQFNFR------RRRHNCYNCGLVYCKLCS 680 (902)
Q Consensus 652 C~~C~~~F~~~------r~rh~C~~CG~v~C~~Cs 680 (902)
|.+|..+|.-. ..+..|..|...||..|=
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 77888888754 367899999999998883
No 240
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.20 E-value=1.1e+02 Score=30.88 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
.|..++.+|++++.+|++.|..-+.||..+++
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999888888776654
No 241
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.19 E-value=91 Score=33.04 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCEEEEEecCCEEEEEEcCCcEEEEeCCC
Q 002602 570 HRYIEDIACGSYHIAVVSSKSEVYTWGKGA 599 (902)
Q Consensus 570 ~~~V~~Ia~G~~hs~aLT~~G~VytWG~n~ 599 (902)
+..+..+.|-..+.++||.+|.+|+|=-..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457888999999999999999999996543
No 242
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.03 E-value=66 Score=37.82 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 841 AQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
++.+++++|.+.++.|++++++++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666555
No 243
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=46.00 E-value=91 Score=30.40 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHH----HHHH----HHHHHHhhhhHHHHHHHHHHHhcCcCccC
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERTSRKLK----ETTQ----IAQEEAEKNKAAQEVIRSLTAQARPGSAL 898 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (902)
..|++|+..+..+|++++.+.++.-+.++ +... -...|-++... -++-|..||..+-.|
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e---~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLE---QKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 56788999999999999999998877765 3333 33444444444 445556665554433
No 244
>PRK14159 heat shock protein GrpE; Provisional
Probab=45.92 E-value=99 Score=31.71 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
-+|+..|+.++++|+.+......+++.++|+.+.-..-+.+.+. -+.+++++-.+.+
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~-~~~~~~LLpV~Dn 85 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYAN-ESFAKDLLDVLDA 85 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 45666777777777777777777777777776665555544433 3555555544443
No 245
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.71 E-value=1e+02 Score=33.60 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=54.4
Q ss_pred ceEEEEec-CCC-ceeEEEEEeCCCCeEEEec---CC-cceeEeccee--eeeecccCChhhhcCCCCCCCCCeEEEEE-
Q 002602 25 TYLLKYGR-RGK-PKFCPFRLSSDEKLLIWYA---GK-EEKQLKLSHV--SRIIPGQRTAVFQRYPQPEKEYQSFSLIY- 95 (902)
Q Consensus 25 t~l~K~~r-~~k-p~~r~f~l~~d~~~l~W~~---~~-~~~~i~l~~I--~eIr~G~~t~~f~~~~~~~~~~~~FSiiy- 95 (902)
..|+|.+. +-+ -|.|.|-|+.+ +|.++. .+ +...|+|.++ ++|---. ...||-|.-
T Consensus 264 GWLlKlgg~rvktWKrRWFiLtdN--CLYYFe~tTDKEPrGIIpLeNlsir~VedP~-------------kP~cfEly~p 328 (395)
T KOG0930|consen 264 GWLLKLGGNRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVEDPK-------------KPNCFELYIP 328 (395)
T ss_pred ceeeeecCCcccchhheeEEeecc--eeeeeeeccCCCCCcceeccccceeeccCCC-------------CCCeEEEecC
Confidence 46888855 322 35678888877 677766 22 3456887654 3333222 234555544
Q ss_pred --------------------cCc-eeeEEeCCHHHHHHHHHHHHHHHHcc
Q 002602 96 --------------------RNR-SLDLICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 96 --------------------~~r-tLDLva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
|.+ .--+.|.++||.+.|+..+++.|++.
T Consensus 329 s~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 329 SNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 122 34588999999999999999999853
No 246
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=45.71 E-value=46 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
.-|+.||+.|+.|.+.++.-+-.++|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555555555544
No 247
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.52 E-value=53 Score=34.55 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+++...|+..++.++++...++.|.+++++++++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333333333333333333333
No 248
>smart00338 BRLZ basic region leucin zipper.
Probab=45.50 E-value=43 Score=28.11 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
+.|..++..|.++...|..+...+..|++.++.++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777777777777776666544
No 249
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.02 E-value=92 Score=32.62 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=35.9
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
+.++++..+...+++..+..+.+.|++-.+..+.|+.++++++..- ..+-...+.+|.-++.+..+|+.
T Consensus 36 i~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y----~kdK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 36 IAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY----EKDKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555566666666666666666555431 11222234456666666655543
No 250
>PLN02320 seryl-tRNA synthetase
Probab=44.76 E-value=36 Score=40.49 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCchhhhhhhHhhhhhh-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH----hhhhHHHHHHHHHHH
Q 002602 816 ANSEVIFEYSKQTNDNF-NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEA----EKNKAAQEVIRSLTA 890 (902)
Q Consensus 816 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 890 (902)
..++.+.+.+++.+-.+ .+++..|-.+.+.|..+.+.+..|..+..|++.+. ...+|. ++.|..|+-|+.|.+
T Consensus 74 ~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~--~~~~~~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 74 DNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGK--LEPSERQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred hCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888776322 46677777777777777777777777777776551 111111 233455555666655
Q ss_pred hcCc
Q 002602 891 QARP 894 (902)
Q Consensus 891 ~~~~ 894 (902)
++++
T Consensus 152 ~~~~ 155 (502)
T PLN02320 152 DLVK 155 (502)
T ss_pred HHHH
Confidence 5544
No 251
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.71 E-value=4.4e+02 Score=28.56 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred eEeeccCCcEEEEcCCCCCCccCCCCCCccccccCccCccCceEecccCCCCeEEEEecCCEEEEEEcCCcEEEEeCCCC
Q 002602 246 HEDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGSG 325 (902)
Q Consensus 246 ~~~l~~~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~l~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~ 325 (902)
..+-..+|++.+.--+. |-.+. ....-..|..-+-..+.+|-.++.-+.|. +.--||+||.|=.|..
T Consensus 25 l~agn~~G~iav~sl~s----l~s~s--------a~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKS----LDSGS--------AEPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEE 91 (325)
T ss_pred EEEecCCCeEEEEEehh----hhccc--------cCCCCCcceeeccccCCCeeeeeeehhhe-eeccCceEEEeeehhh
Confidence 44556677777776554 11111 11223333333334456788888776664 4456799999998876
Q ss_pred CC-CCCCCCcccccceEeecC
Q 002602 326 GK-LGHGVEADVSYPKLIDAL 345 (902)
Q Consensus 326 GQ-LG~g~~~~~~~P~~V~~l 345 (902)
-. ++....-.+..|..+..+
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~ 112 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAV 112 (325)
T ss_pred hhhccchhhhhhcCccccCcc
Confidence 54 554444455667666543
No 252
>PRK02119 hypothetical protein; Provisional
Probab=44.34 E-value=1.3e+02 Score=26.26 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
+|+..+.+.+.+|+.|.-.|+.-|+.+.+-+-
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~ 33 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALI 33 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666555433
No 253
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=44.06 E-value=18 Score=28.62 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=34.3
Q ss_pred ccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhh
Q 002602 652 CSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFI 705 (902)
Q Consensus 652 C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~ 705 (902)
|..|+. ........-|..|+..|+..|........... ...++|+.|-.
T Consensus 2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~----~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP----SGDWYCPNCRP 50 (51)
T ss_dssp BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH----SSSBSSHHHHH
T ss_pred CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCC----CCcEECcCCcC
Confidence 556666 34456678899999999999998754332222 22899999964
No 254
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=44.00 E-value=1.3e+02 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=28.6
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
+.+.-+-+.+.+.++..++..|+++-...+.|+.+..++.-.||.
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr 52 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMR 52 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666777777777777777777766655553
No 255
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.95 E-value=42 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=38.7
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
-..+.+.|++.-+.|..++.+|..+++.+..+......+|++++|
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888888899999999999999999999999999988864
No 256
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=43.87 E-value=62 Score=33.60 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=25.6
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
++.|+....-|.+||.|+..|+++-..++.+|++...++
T Consensus 19 ~~~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~A 57 (191)
T PTZ00446 19 KKNNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEA 57 (191)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566677777777777777777777776655543
No 257
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=43.40 E-value=1.3e+02 Score=30.27 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=34.1
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+.+.+...++...+++.+-+..-+....-.+..+.+|.+.+++..+-..-|++|+.
T Consensus 31 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~ 86 (161)
T COG0711 31 ILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAE 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555544444454555667777777777777766666665
No 258
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.22 E-value=54 Score=40.87 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh----HHHHHHHHHHHHhhhhHHHHHHHHHHH----hcCc
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRK----LKETTQIAQEEAEKNKAAQEVIRSLTA----QARP 894 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 894 (902)
|.++..-.-|..|+.+||.+++..++++...+.|++++.+. -+|+-.|-..=++=..-+...=++|.+ .|.=
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL 620 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDL 620 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred CccCC
Q 002602 895 GSALG 899 (902)
Q Consensus 895 ~~~~~ 899 (902)
++|||
T Consensus 621 fsaLg 625 (697)
T PF09726_consen 621 FSALG 625 (697)
T ss_pred HHHHH
No 259
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=43.20 E-value=93 Score=34.40 Aligned_cols=25 Identities=36% Similarity=0.326 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHhhhhHHHHH
Q 002602 860 TSRKLKETTQIAQEEAEKNKAAQEV 884 (902)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (902)
-+++.+++.+-+.+|++|.||+-|-
T Consensus 145 ~kk~aE~a~aka~aEA~k~Ka~aeA 169 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAKLKAAAEA 169 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3455666667788888887666554
No 260
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.11 E-value=1.6e+02 Score=30.09 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 002602 833 NQEPDVLRA 841 (902)
Q Consensus 833 ~~~~~~~~~ 841 (902)
.+|+.+++.
T Consensus 94 ~~el~~l~~ 102 (191)
T PF04156_consen 94 QEELDQLQE 102 (191)
T ss_pred HHHHHHHHH
Confidence 334433333
No 261
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.01 E-value=81 Score=36.16 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=51.6
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHH----------HHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLT----------RKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRS 887 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (902)
-+.....|++-|..|++|-.++++..+.|+ -+..+...|+++-+-..++|+..-.|+-.|.+-+..+-+.
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~ 132 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEA 132 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 355667889999999999888777554443 3444444555555556678888889999999888777665
Q ss_pred HHH
Q 002602 888 LTA 890 (902)
Q Consensus 888 ~~~ 890 (902)
+.+
T Consensus 133 ~~~ 135 (459)
T KOG0288|consen 133 LKD 135 (459)
T ss_pred hhh
Confidence 544
No 262
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.98 E-value=2.3e+02 Score=32.80 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=9.8
Q ss_pred hhhHhhhhhhhhhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRA 841 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~ 841 (902)
.++++....|.+++++|+.
T Consensus 222 ~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555
No 263
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.93 E-value=49 Score=31.61 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
.|.+..+-|.-+|+.|+.+.+..+.++++++.++..+..
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555555566666666555543
No 264
>PRK14161 heat shock protein GrpE; Provisional
Probab=42.87 E-value=1.3e+02 Score=30.84 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=16.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVEL 857 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (902)
+.|++-.+.|.....+++|+.++++++.+....++
T Consensus 29 ~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 29 TALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555544433333
No 265
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=42.87 E-value=1.6e+02 Score=27.68 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=46.4
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCc
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQF-------LEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGS 896 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (902)
.+...-..|++||++||..++.-+.|... +--||++--..+|.++...++.-+--|+..+=+| .-||..|-
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~--rwklmG~G 82 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK--RWKLMGMG 82 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH--HHHHhccc
Confidence 34555667899999999888766555432 2234444444556666666665555555444444 33788888
Q ss_pred cCCc
Q 002602 897 ALGI 900 (902)
Q Consensus 897 ~~~~ 900 (902)
|||.
T Consensus 83 aLgv 86 (112)
T PF07439_consen 83 ALGV 86 (112)
T ss_pred hhhh
Confidence 8874
No 266
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=42.87 E-value=8.3e+02 Score=31.22 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=64.3
Q ss_pred EEecCCEEEEEEcCCcEEEEeCCC---CCCCCCCCCcccccceEeecCCCCCEEEEEec-----CcEEEEEEcCCcEEEE
Q 002602 301 IACGSKHAVLVTKQGQIFSWGEGS---GGKLGHGVEADVSYPKLIDALNGSNIHMVACG-----EFHTCAVTLSGDLYTW 372 (902)
Q Consensus 301 Ia~G~~hs~~Lt~dG~Vy~wG~N~---~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~Vy~W 372 (902)
++....+.+++|+.|++|..-... .+..+.|. .....+....+.+|+.+.+- ....+++|.+|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK----PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc----CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 345566788899999999983321 11111111 11112333456677776652 2357788899977655
Q ss_pred cCCCCCC-CCCCCCCCcceeeeeeeccCCCCccEEEEee--cCCcceeeeeCCeEEEeccCCCCCCC
Q 002602 373 GDGIHNL-GLLGQVSEISHWIPRKVSGQMEGLQISSICC--GPWHTAAITSAGKLFTFGDGTFGALG 436 (902)
Q Consensus 373 G~n~~~~-GqLG~g~~~~~~~P~~v~~~l~~~~I~~Vsc--G~~hs~aLt~~G~Vy~wG~n~~GQLG 436 (902)
-.+.+.. ...| ......-++..++.+.. ...+.+++|++|++|.+-....-..|
T Consensus 618 ~l~~~~~~~r~G----------~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 618 SLTEFSNIRSNG----------IIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred EhHHhhhhccCC----------cccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 3321100 0001 00000112334554433 33468999999999998665544433
No 267
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.86 E-value=1.1e+02 Score=34.99 Aligned_cols=76 Identities=22% Similarity=0.094 Sum_probs=45.4
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHhHH------HHHHHHHHHHhhhhHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDL-----------TRKSQFLEVELERTSRKLK------ETTQIAQEEAEKNKAA 881 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 881 (902)
-....+++..-+.|.-||++||.+...- .++....+.|..++|+||+ ||+-.--+|+++.-.+
T Consensus 245 gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslem 324 (552)
T KOG2129|consen 245 GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEM 324 (552)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3445677888888999999999865432 2222233456666677665 4455555666655444
Q ss_pred HHHHHHHHHhcCcCccCC
Q 002602 882 QEVIRSLTAQARPGSALG 899 (902)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~ 899 (902)
-|- .=+++|++.|
T Consensus 325 dee-----ry~Ne~~~~g 337 (552)
T KOG2129|consen 325 DEE-----RYLNEFVDFG 337 (552)
T ss_pred HHH-----HHHhhhhccC
Confidence 432 1366666655
No 268
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=42.78 E-value=7.6 Score=42.76 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=48.8
Q ss_pred cccccccccccCCcccccccccccccccCCceeecCCCC----ccccccccCCCCCCCeeechhhhhh
Q 002602 643 GVSIADHSICSGCRNQFNFRRRRHNCYNCGLVYCKLCSS----KKSMKTALAPEINKPYRVCDDCFIK 706 (902)
Q Consensus 643 ~v~~~d~s~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css----~~~~~~~~~p~~~~p~RVC~~C~~~ 706 (902)
|....+...|..|...|.|+++.|+|+.||+++|..|.. ++.+.+....-...+.+.|..|...
T Consensus 14 ~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 14 WQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 344556667788888999999999999999999999976 2224444444455778999999887
No 269
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.52 E-value=87 Score=38.81 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=19.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
+.+.+++.++++++..++++.+..+.++++++++++
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555543
No 270
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.52 E-value=1.1e+02 Score=31.41 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 838 VLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
.|.+|.....|+.-.+...++..+.-.+++=..+.|=.-|..++++++++|..+|
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el 139 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWEL 139 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444445555554444444444444556667777777776654
No 271
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.49 E-value=1.2e+02 Score=31.75 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=28.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.+-|.+..+.+..++..-..--+...+..+..+.+|.+.+++.++-+.-|++|+.+
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333332222333333446667777777766666666666543
No 272
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.36 E-value=93 Score=39.39 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=6.2
Q ss_pred HHhHHHHHHHHHHHH
Q 002602 861 SRKLKETTQIAQEEA 875 (902)
Q Consensus 861 ~~~~~~~~~~~~~~~ 875 (902)
+++-++.+.-|++|+
T Consensus 556 ~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 556 KERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444444
No 273
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.32 E-value=78 Score=27.83 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=23.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
....+..|+.+++.|++.|+.+-+.+..|+..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456677777777777777777777777666553
No 274
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=42.17 E-value=1.4e+02 Score=30.43 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=35.1
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+-.+.+..++......-+...+..+..+.+|++.++++++-+.-|.+|+++.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444445555567777777777777777777766644
No 275
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=42.06 E-value=1.5e+02 Score=26.74 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHH-hHHHHHHHHHHHhHHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKS-QFLEVELERTSRKLKETTQIAQEEA 875 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
.|.+|+..|+.++++|.... +.-..++.+...++++...-+++.+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~ 47 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRA 47 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666433 2334455555555555555444433
No 276
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.05 E-value=1.2e+02 Score=30.34 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=28.8
Q ss_pred hhhhHhhhhhhhhhHH-------HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 822 FEYSKQTNDNFNQEPD-------VLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.+.+-+.+..|.+.+. .|+++++......+.-...|++++++++.....-++|..|
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555554444 4454555444444555555555555555555555555444
No 277
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=42.04 E-value=1.7e+02 Score=29.45 Aligned_cols=41 Identities=37% Similarity=0.442 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 856 ELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
+..+-.+.+.++|.-|.++|.+-| .+.=|+.|..+=++.+.
T Consensus 116 ~~~~k~~~l~e~~q~Aqe~A~~~K-q~~R~r~l~~~~hd~s~ 156 (157)
T PF15236_consen 116 EQTRKTQELYEAMQRAQEEAQREK-QEQRIRELEQKGHDVSN 156 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccc
Confidence 333444455678888888888877 44456666665555543
No 278
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.96 E-value=1.2e+02 Score=35.28 Aligned_cols=44 Identities=34% Similarity=0.396 Sum_probs=28.6
Q ss_pred hhhHhhhhhhhhhHHH-------HHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 823 EYSKQTNDNFNQEPDV-------LRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+..+..-+.+.+|+.. +++..+.+++++.+++.++.++++++++
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544 4555667778888888888888887764
No 279
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.84 E-value=1.6e+02 Score=32.70 Aligned_cols=73 Identities=26% Similarity=0.282 Sum_probs=46.3
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQF-------LEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
-+..+|.+.+-+.-|..|+..|+.++++++.|++. .+.+|..+++.+++++..-.+=-.+..+.+|=|.+|..
T Consensus 59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 34556666666777777777777777777666654 44566666777776666555555556666665555543
No 280
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.80 E-value=60 Score=33.54 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=24.3
Q ss_pred hhhhHhhhhhhhhhHHHHH------HHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLR------AQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
.+.|-..++.|.+.++.|+ .+|..|+...+.++.+++.+.++|.++
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443 355566666666666555555555443
No 281
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=41.67 E-value=46 Score=32.49 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=19.3
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
++.|++.-+.|...+.+|+.++..++++.+....++++..+
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455554444444444444444444443
No 282
>smart00030 CLb CLUSTERIN Beta chain.
Probab=41.62 E-value=1.3e+02 Score=31.30 Aligned_cols=57 Identities=28% Similarity=0.277 Sum_probs=41.4
Q ss_pred hhhhhhhHHHHHH---HHHHHHHHHhH----HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 002602 829 NDNFNQEPDVLRA---QLEDLTRKSQF----LEVELERTSRKLKETTQIAQEEAEKNKAAQEVI 885 (902)
Q Consensus 829 ~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (902)
..-+++||++.-. |++.+-.|.+. +-.-|++++++-+||+.+|.|=-.|.+++.+|-
T Consensus 17 ~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 17 SKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776655 45555444333 335688999999999999999999999988875
No 283
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.40 E-value=96 Score=34.39 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=51.9
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
......+..|+..||.+|..+...-...+.++..++..+++.-.-..+|.+.++.+..-|..|-.+|.
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34456678888888888888888878888888888888888777777778888888777777765544
No 284
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=41.32 E-value=1.3e+02 Score=30.91 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=39.5
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNK 879 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
+.+-|.+..+.+.+++.......+..++.....+.+|+..+++.++.+.-|++|+.+.+
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~ 107 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREK 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555545555555566777888888888888888888877653
No 285
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.26 E-value=94 Score=28.76 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh---HHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRK---LKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
|-++..+|+.++++|+.+-.....+|....++ +++..+-+++=..+.++..+-++.+..+|.+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888877788888877773 5555555665556666666666666666544
No 286
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.12 E-value=1.5e+02 Score=27.52 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=23.2
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
.+.++..++-+..-+..|...+..++.+++....+|...-.++
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566666655555555555555554443333
No 287
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.04 E-value=1.2e+02 Score=31.32 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=10.2
Q ss_pred CchhhhhhhHhhhhhhhhhHHHHHHH
Q 002602 817 NSEVIFEYSKQTNDNFNQEPDVLRAQ 842 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (902)
||......++..-+.|.+|+.+++..
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~ 84 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKK 84 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444333
No 288
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=41.01 E-value=1.4e+02 Score=31.38 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=40.9
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+-+.+-|....+.+.+++...+..-++..+..+..+.+|++.++++++-+.-|.+|+.+-
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~ 130 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQL 130 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666665555566666677788888888887777777777644
No 289
>PRK09039 hypothetical protein; Validated
Probab=40.67 E-value=1.6e+02 Score=33.45 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=43.1
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHH-------HHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDL-------TRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
-+....+....=..|++||..||+|+..| +++-..++.+|+.++++|+.|++--..|-++. ..+|+..|.+
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~--~~~~~~~l~~ 205 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY--RSEFFGRLRE 205 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 33444455555678888888888766554 45555566667777777777765533333332 3456655544
Q ss_pred hc
Q 002602 891 QA 892 (902)
Q Consensus 891 ~~ 892 (902)
-|
T Consensus 206 ~~ 207 (343)
T PRK09039 206 IL 207 (343)
T ss_pred Hh
Confidence 33
No 290
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=40.64 E-value=75 Score=37.10 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH--------------HHHHHHHHHHhhhhHHHHHHHHHH---HhcCcC
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK--------------ETTQIAQEEAEKNKAAQEVIRSLT---AQARPG 895 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 895 (902)
..|.++|+...++..+||+..+.|+.+++..|. .|-..+.-|-..+|+|+-=...|. .++++|
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 789999999999999999999999988876544 444455666677777764444443 356666
Q ss_pred ccCCc
Q 002602 896 SALGI 900 (902)
Q Consensus 896 ~~~~~ 900 (902)
-.-||
T Consensus 107 l~~~~ 111 (604)
T KOG3564|consen 107 LKCDI 111 (604)
T ss_pred Hhccc
Confidence 65554
No 291
>PRK10869 recombination and repair protein; Provisional
Probab=40.42 E-value=88 Score=38.00 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-----hhhhHHHHHHHHHHHhcCcCc
Q 002602 855 VELERTSRKLKETTQIAQEEA-----EKNKAAQEVIRSLTAQARPGS 896 (902)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 896 (902)
..+++++++++++..-..+-| .+.+||+++-+.++.+|+++.
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444433333333 234689999999999988764
No 292
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.38 E-value=1.1e+02 Score=37.18 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=24.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 855 VELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
+|+++++++++..-..++......+.+++.++...++||.+..
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccH
Confidence 3444455544454444555445556667777777777766543
No 293
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.34 E-value=49 Score=33.36 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=22.7
Q ss_pred HhhhhhhhhhHHHHHHHHH------------HHHHHHhHHHHHHHHHHHh
Q 002602 826 KQTNDNFNQEPDVLRAQLE------------DLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 863 (902)
.+....|..|+.+|+.|.. .|++|.+..++||+++++.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777776544 4566666666666655553
No 294
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=40.34 E-value=70 Score=37.22 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=27.6
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHH----------HhHHHHHHHHHHHhHHHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRK----------SQFLEVELERTSRKLKETTQIA 871 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 871 (902)
++.-+.|.+++.+|+.+++.|+.+ ....+.+|+..+|+++|+-.+.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666554 5555666666666666665553
No 295
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=40.19 E-value=1.6e+02 Score=31.57 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 863 KLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
+-++|..+|.+=-+..|-+-|=+|.++.+|++|++
T Consensus 172 eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~ 206 (254)
T KOG2196|consen 172 EREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSK 206 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 33455556655556666666777777778887775
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.15 E-value=1.3e+02 Score=31.41 Aligned_cols=73 Identities=23% Similarity=0.198 Sum_probs=52.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH--------hhhhHHHHHHHHHHHhcCc
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEA--------EKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 894 (902)
..++.....+.+++..|+-+.+.|.++++..+.|-.++.++.+.++.-+...+ .|.++..+.+..-.+||.+
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677888888888888888888888888888888888877776665 3555666666666666665
Q ss_pred C
Q 002602 895 G 895 (902)
Q Consensus 895 ~ 895 (902)
+
T Consensus 169 v 169 (201)
T PF13851_consen 169 V 169 (201)
T ss_pred H
Confidence 4
No 297
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.11 E-value=91 Score=37.60 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHH---HHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 834 QEPDVLRAQLEDL---TRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 834 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
+...++++++..| ...++.++.+++++++++.++..--. ..++++|+++=+.++++||++
T Consensus 325 ~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls--~~R~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 325 EYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS--AIRKKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 3334444433333 34455666666666665555432221 356889999999999988764
No 298
>PRK14149 heat shock protein GrpE; Provisional
Probab=40.03 E-value=1.4e+02 Score=31.13 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
.+..|+++++.|+.+......+++.++|+.+.-...+.+-+. -+.+++++-.|
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~-~~~~~~LLpVl 96 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAY-EKIALDLLPVI 96 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHH
Confidence 345556666666666666666665555555443333333222 23444444333
No 299
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=39.91 E-value=1.3e+02 Score=31.27 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEE 874 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (902)
..|++..|++.|+.--+..+++++.|+.++.-+-.|.--|++-
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qK 114 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQK 114 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888877888888888888888777777777653
No 300
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.90 E-value=52 Score=33.94 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=5.6
Q ss_pred HHHHHHHHHhHHH
Q 002602 854 EVELERTSRKLKE 866 (902)
Q Consensus 854 ~~~~~~~~~~~~~ 866 (902)
+.|++++++++++
T Consensus 160 ~~ei~~lk~el~~ 172 (192)
T PF05529_consen 160 SEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 301
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=39.34 E-value=1.1e+02 Score=34.16 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=41.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQ-----------FLEVELERTSRKLKETTQIAQEEAEKNKAAQE 883 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (902)
.|.-|.+|-..|+...+.|..+++ ..+.|+|.+..|++++...+..|.+|++.-++
T Consensus 129 ~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~ 195 (309)
T PF09728_consen 129 RNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKE 195 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344455566666665555555554 55678899999999999999999999998888
No 302
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.25 E-value=1.3e+02 Score=27.26 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
|.+||++|.+.-..|.++.+..+....+++. ..+|=+.+.++|-|-|+++.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~-------~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEE-------ANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444443333332222 23333456677777777664
No 303
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.15 E-value=1.1e+02 Score=35.45 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhhHHH
Q 002602 867 TTQIAQEEAEKNKAAQ 882 (902)
Q Consensus 867 ~~~~~~~~~~~~~~~~ 882 (902)
+++-|+|+++..+||.
T Consensus 246 ~aA~~re~~aa~~aa~ 261 (420)
T COG4942 246 AAAKAREAAAAAEAAA 261 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444344433
No 304
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.14 E-value=6.8e+02 Score=29.11 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=19.1
Q ss_pred CCEEEEEec--CCEEEEEEcCCcEEEE
Q 002602 571 RYIEDIACG--SYHIAVVSSKSEVYTW 595 (902)
Q Consensus 571 ~~V~~Ia~G--~~hs~aLT~~G~VytW 595 (902)
..|.+|+.. +.|.++++.+|.+|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 457777665 5678888999999885
No 305
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.11 E-value=95 Score=31.20 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
.|..|.++|+.+++.|+++-+.++.|++++.+++.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999888888764
No 306
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.99 E-value=72 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=16.3
Q ss_pred HHHhhhhHHHHHHHHHHHhcCcCcc
Q 002602 873 EEAEKNKAAQEVIRSLTAQARPGSA 897 (902)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (902)
||.+..+..++-||....++.+|-+
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 5566666666667776667777654
No 307
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.83 E-value=1.7e+02 Score=29.18 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=43.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCc
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGS 896 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (902)
+.|.++...|..|+....+..+.++.|+.+.+..++.-...-.+=-.+++++...++.....++.+.
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 4556666777777777777777777777776666666655555555666666666666665544443
No 308
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.70 E-value=2.4e+02 Score=27.14 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.2
Q ss_pred ceeeEEeCCHHHHHHHHHHHHHHH
Q 002602 98 RSLDLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 98 rtLDLva~~~~e~~~Wv~gL~~Li 121 (902)
.+|-|.|++..|.+.||..|.-|-
T Consensus 96 ~~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 96 CSTLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred cEEEEEeCCchHHHHHHHHHHHHH
Confidence 789999999999999999998774
No 309
>PRK00736 hypothetical protein; Provisional
Probab=38.62 E-value=61 Score=27.80 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=22.1
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELER 859 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (902)
..++-+.||+.|.+.+.++..|+++++.+..+|+.
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777666555555443
No 310
>PF14282 FlxA: FlxA-like protein
Probab=38.58 E-value=1.6e+02 Score=27.44 Aligned_cols=57 Identities=11% Similarity=0.209 Sum_probs=36.4
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHH----HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRA----QLEDLTRKSQFLEVELERTSRKLKETTQIAQEEA 875 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
...++.|++--..|.+++..|.+ -.+.-+++.+++..+|+.++.+|.+.-.-..++.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666667777766666 2344556666777777777777766555544444
No 311
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.56 E-value=1.1e+02 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=19.2
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
..++.+--..+-.||+.|.+||+++-.|.+..+.++.+++++
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555554444444444444443333
No 312
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.53 E-value=59 Score=29.85 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=44.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHH---------HHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLE---------VELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.-.+.+..|+.+|+.+++.|........ .+|+.+.++++.|+..++. .|-+.-.+-|+.|..
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ 82 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKK 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHH
Confidence 3445678888899988888887765543 6899999999999988875 344455555555544
No 313
>PRK00295 hypothetical protein; Provisional
Probab=38.42 E-value=67 Score=27.54 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=20.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELER 859 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (902)
...+-+.||+.|.+.+.||..|+++++.+..+|+.
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777766666666665555444443
No 314
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.34 E-value=9e+02 Score=30.33 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=65.2
Q ss_pred eEEEEecCCE--EEEEEcCCcEEEEeCCCCCCCCCCCCccc-ccceEeecCCCCCEEEEEecCcEEEEEE--cCCcEEEE
Q 002602 298 AQSIACGSKH--AVLVTKQGQIFSWGEGSGGKLGHGVEADV-SYPKLIDALNGSNIHMVACGEFHTCAVT--LSGDLYTW 372 (902)
Q Consensus 298 I~~Ia~G~~h--s~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~-~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~Vy~W 372 (902)
|.+++.|..- ++.+...|.-.++|...-|||+.=.-... ...++-..+ ..|..++-..+-.++.| +||+|-+|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4455555433 45556668888888888777765221111 111111111 14555555555444443 78999999
Q ss_pred cCCCCCCCCCCCCCCcceeeeeeeccCCCCccEEEEeecCCcceeeeeCCeEEEeccCCC
Q 002602 373 GDGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTF 432 (902)
Q Consensus 373 G~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~VscG~~hs~aLt~~G~Vy~wG~n~~ 432 (902)
-... | +--.....+..+...++++.-.+..+-..=||.|-+|-...|
T Consensus 378 n~~S---g----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---G----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---c----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 4431 1 111122223345556677776666667777899999976554
No 315
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.29 E-value=52 Score=30.03 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=30.0
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
...-+.|.+++..+..+++.|+.+.+..+.++++++.++.+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777778888888888888888887777654
No 316
>PLN02678 seryl-tRNA synthetase
Probab=38.27 E-value=87 Score=36.93 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=47.4
Q ss_pred CchhhhhhhHhhhhh--hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH----HhhhhHHHHHHHHHHH
Q 002602 817 NSEVIFEYSKQTNDN--FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEE----AEKNKAAQEVIRSLTA 890 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 890 (902)
.+..+.+.+++.+-. +..|+.+|-.+-++|..+.+.+..|..+..|++.... ...++ .++.+.-|+=|+.|.+
T Consensus 14 ~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-~~~~~~~~l~~~~~~Lk~ei~~le~ 92 (448)
T PLN02678 14 DPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEA 92 (448)
T ss_pred CHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 456677778877632 3577777777777777777777777777777775422 11122 2334555566666666
Q ss_pred hcCc
Q 002602 891 QARP 894 (902)
Q Consensus 891 ~~~~ 894 (902)
++++
T Consensus 93 ~~~~ 96 (448)
T PLN02678 93 EVQE 96 (448)
T ss_pred HHHH
Confidence 5544
No 317
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.26 E-value=1.5e+02 Score=32.74 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=45.4
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIR 886 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (902)
..+...-+-||.+|..++.++.+|+.+......++++++.+-.+..+-+.+ ..+-+.++.+
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e---L~~~~~~l~e 97 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE---LRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 334445567888888888899999999999999999999888888877766 3444444433
No 318
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.25 E-value=1.8e+02 Score=28.52 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 858 ERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
+..++.++.=+.+.++.-+|.+.=|+-+|.|-..+
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 44555556667777777777777777777765443
No 319
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.23 E-value=82 Score=28.30 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
.|..+|+.|.++|..|.+.-+.....++..+.+++.|-.
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~ 66 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANT 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877777777777776666543
No 320
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.05 E-value=92 Score=38.49 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
++.--.+|......+++|++.|..+|..+|.|+|.+|. ++++-|.-| |.++--|..+++.|++
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~------ti~~~q~d~-ke~etelE~~~srlh~ 152 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD------TIQGAQDDK-KENEIEIENLNSRLHK 152 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHhhHHHHHH
No 321
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.99 E-value=1.5e+02 Score=35.28 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 841 AQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
..+..|+.+-++|-++|+.+.++.+..-.+|..=+.+...|+|==.+|...|+.
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~ 641 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKK 641 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 357788888888888999888888877777777777777777777777765543
No 322
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=37.94 E-value=1.2e+02 Score=35.64 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 002602 844 EDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIR 886 (902)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (902)
+.=.++-+.+-.-|++++++-|||+.+|+|=-+|.+.+.++-.
T Consensus 33 ek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 33 EKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455567899999999999999999999999988755
No 323
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.85 E-value=1.4e+02 Score=38.52 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=55.2
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
.+++..-....-+||+...++++.|+.+.+..+.+.|+.......--.-+..|..|..++++.+|.-...++
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 677777777777788888888888888888888888888777777777778888888888888875554444
No 324
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=37.77 E-value=22 Score=41.93 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
+.|+|++|+.|+++|++|.+.++.++.+.++
T Consensus 29 ~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 29 LLQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 3457788888888888877777777766666
No 325
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=37.56 E-value=24 Score=35.40 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 852 FLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
..+.+.++++.+++.++.-...|+.
T Consensus 85 ev~~qa~~l~e~lQ~~vq~l~~E~q 109 (155)
T PF07464_consen 85 EVEKQANELQEKLQSAVQSLVQESQ 109 (155)
T ss_dssp HHHHT-SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666665
No 326
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.55 E-value=66 Score=27.69 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
.++.+++.|+..|+.+.+.+..+.++++++++.-
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777777777777777777776666554
No 327
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=37.54 E-value=1.6e+02 Score=29.83 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=35.7
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+-+.+-|.+.++.+.+++...+..-+......+..+.+|+..++++++-..-|.+|+++
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666655555444455555556666666666666666666666544
No 328
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.52 E-value=1.1e+02 Score=37.02 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=34.2
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
-+.+.+.++.....+.+++.+|+++++.++.+.+.++..+.+.+++..+...-..+|-.+
T Consensus 165 ~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~ 224 (562)
T PHA02562 165 LSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDE 224 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566677777777777777776666655555555554444444333333
No 329
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=37.51 E-value=2.1e+02 Score=26.85 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
++.+.+|+++.+.+.+..++++..+++++..+++.-
T Consensus 24 s~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r 59 (110)
T PF10828_consen 24 SQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNR 59 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666665555443
No 330
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=37.46 E-value=61 Score=30.08 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.2
Q ss_pred HHHHHHHHHhH----HHHHHHHHHHhHH
Q 002602 842 QLEDLTRKSQF----LEVELERTSRKLK 865 (902)
Q Consensus 842 ~~~~~~~~~~~----~~~~~~~~~~~~~ 865 (902)
|++.|+++.+. ++++|++.+++++
T Consensus 73 qL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 73 QLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66777777766 8888888888764
No 331
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=37.37 E-value=1.9e+02 Score=28.60 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=32.7
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+..+.+.+++......-+...+..+..+.+|...++++.+...-|.+|+.+.
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~ 86 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQI 86 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444444445555566666666666666666666665543
No 332
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.33 E-value=1.7e+02 Score=31.44 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEE 874 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (902)
|..++.+|+.+++.|+.+...++.++-..++.++++++-+.++
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~ 157 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666666666666666553
No 333
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=37.01 E-value=1.5e+02 Score=30.43 Aligned_cols=52 Identities=6% Similarity=0.092 Sum_probs=24.8
Q ss_pred hhhHhhhhhh---hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 823 EYSKQTNDNF---NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 823 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.-|.+..+.+ .++.++++.+++.+..+ .+.+|++.+++.++-+.-|.+|+.+
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e---ye~~L~~Ar~EA~~ii~~A~~ea~~ 112 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKA---YNKALADARAEAQRIVAETRAEIQA 112 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 33444444444444444 5555555555555555555444443
No 334
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.99 E-value=2.3e+02 Score=28.41 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=8.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTR 848 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~ 848 (902)
..+.|..++.....|++.|+.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333
No 335
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=36.99 E-value=1.5e+02 Score=33.73 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 842 QLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
||+.|+.+...++.+|++.++.+++
T Consensus 16 ~V~~m~~~L~~~~~~L~~k~~e~e~ 40 (344)
T PF12777_consen 16 QVEEMQEELEEKQPELEEKQKEAEE 40 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 336
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.94 E-value=1.2e+02 Score=31.50 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=26.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
-...+++.......++..|++++..|+.++..++.+|++..+-++
T Consensus 103 ~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 103 ELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666777778888888888888888888877776544
No 337
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.87 E-value=98 Score=33.34 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
|.+|+.++|+++.+|..+-+.++.++...+
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 338
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=36.81 E-value=70 Score=33.86 Aligned_cols=44 Identities=32% Similarity=0.331 Sum_probs=29.8
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
.+.+|..-|+.|.-|-+.||++-++|--|-+.++.+|++..+.+
T Consensus 98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567778888888888888877776666555555555444433
No 339
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=72 Score=29.86 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=33.3
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
....|.-+-++.|+.++.+|++++.++|+.+...+-++++..+
T Consensus 72 ~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 72 TNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666778888888888888888888888888877777554
No 340
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=36.66 E-value=99 Score=35.11 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhHHHHHHHHHHHh
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT-------QIAQEEAEKNKAAQEVIRSLTAQ 891 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 891 (902)
.+++.+.+++++..+.+....+.+|+.++++.+++. .-+..=..|...|+.+|..|..+
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 333344444444444444444444444444433333 23333345778888888887763
No 341
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=36.64 E-value=1.8e+02 Score=32.16 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
.++..|.+++..|+.+......+|+++..
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELAN 186 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444444444444333
No 342
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=36.60 E-value=1.4e+02 Score=30.91 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH----HhhhhHHHHHHHHHHHhcC
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEE----AEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 893 (902)
.+|-..++..++.|+-+-+.++.+|-.+++|++.+--.-.|| -.|.+.--+++|-.-.|||
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLK 248 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLK 248 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888888888888888888776554444433 2355555566655444555
No 343
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.55 E-value=96 Score=34.36 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh------------hhHHHHHHHHHHHhcCcC
Q 002602 840 RAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK------------NKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 895 (902)
+.++..+..+...++.|+...+++++.+...+..|..= ++.+++.++...++|..+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l 201 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTL 201 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44777788888888888888888888888888888754 778888888777766544
No 344
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=1.8e+02 Score=27.90 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=46.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh---HHHHH----------------HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQ---FLEVE----------------LERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
+.|.+|++..+.|+++|..-|. ..+.+ +.+++-+|+|+-.-+-.|-++..+-+|.|++--+
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666654433 22222 5677788888888888888888888888888888
Q ss_pred hcCcC
Q 002602 891 QARPG 895 (902)
Q Consensus 891 ~~~~~ 895 (902)
+||.|
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 88765
No 345
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.51 E-value=1e+03 Score=30.99 Aligned_cols=203 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCEEEEEecCcE--EEEEEcCCcEEEEcCCCCCCCCCCCCCCcceeeee---eeccCCCCccEEEEeecCCcceeeeeC
Q 002602 347 GSNIHMVACGEFH--TCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR---KVSGQMEGLQISSICCGPWHTAAITSA 421 (902)
Q Consensus 347 ~~~I~~Va~G~~h--s~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~---~v~~~l~~~~I~~VscG~~hs~aLt~~ 421 (902)
...|.+|+.+..+ .++++.+|.|+.|-..................... ..........+.+++.-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CeEEEeccCCCCCCCCCCCCCCcccccccccccCeEEEEEecCceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCC
Q 002602 422 GKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGH 501 (902)
Q Consensus 422 G~Vy~wG~n~~GQLG~g~~~~~~~P~~V~~l~~~~i~~VacG~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~ 501 (902)
.. -..+..-.+...+.........+....+.-.....+...+.+++-. .+|++| .+-.
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----------~~G~v~--------~~~~ 563 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT-----------NDGKVF--------QLSS 563 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE-----------CCCEEE--------Eeec
Q ss_pred CCCCCeeeeEEeeecCCCCeEEeecCcc---EEEEEecCCcEEEEecCCCCCCCCCCCCCccceeeecCCCCCCEEEEEe
Q 002602 502 GDAEPRVVPLCVKVSDDISFCKVACGHS---ITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIAC 578 (902)
Q Consensus 502 g~~~~~~~P~~v~~l~~~~I~~Ia~G~~---htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~ 578 (902)
....... ...+.+-..--+...-+.. +.+.|+.+|++|+=+ .+-...+..+..
T Consensus 564 ~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v 619 (928)
T PF04762_consen 564 DGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAV 619 (928)
T ss_pred CCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEE
Q ss_pred cCCEEEEEEcCCcEEEE
Q 002602 579 GSYHIAVVSSKSEVYTW 595 (902)
Q Consensus 579 G~~hs~aLT~~G~VytW 595 (902)
...|-++.|.+-.+...
T Consensus 620 ~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 620 TDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EcCEEEEEecCceEEEE
No 346
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.26 E-value=1e+02 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=26.8
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
.|.+.+..+.+++.+|+++|++|+.+......+.......+++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 4555666666777777777777777666666555555555544
No 347
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.19 E-value=67 Score=28.16 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHH
Q 002602 845 DLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
+|+...+.+..||++.++.+.+|
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555544
No 348
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=36.08 E-value=94 Score=34.48 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=30.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRS 887 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (902)
+--|.||-.+|+.++++|+.|.+.+|.|..+ +.+.|-+.+. || +-+++-++|.-
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~--s~V~E~vet~-dv--~~d~i~Kimnk 87 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLR--SHVCEDVETN-DV--IYDKIVKIMNK 87 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHH-HH--HHHHHHHHHHH
Confidence 3457777777777777777777777555443 2333334443 22 34444444433
No 349
>PHA03098 kelch-like protein; Provisional
Probab=36.07 E-value=2.3e+02 Score=33.86 Aligned_cols=17 Identities=6% Similarity=0.303 Sum_probs=11.7
Q ss_pred ccEEEEEecCCcEEEEec
Q 002602 528 HSITIALTATGQVFSMGS 545 (902)
Q Consensus 528 ~~htlaLt~~G~Vy~wG~ 545 (902)
..|+++ .-+|++|++|.
T Consensus 381 ~~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGG 397 (534)
T ss_pred ccceEE-EECCEEEEECC
Confidence 344444 45789999995
No 350
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.05 E-value=57 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=17.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERT 860 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (902)
..+-+-||+.|.+.+.+|..|+++++.+..+|+..
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666655555555555555444443
No 351
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.98 E-value=1.9e+02 Score=27.94 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=27.7
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQE 883 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (902)
|..-...+.+++..+.+++..++...+.+....++++++.+.-+.+=++.+....++|+
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~ 66 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLRE 66 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333444445555555555555555555555555555544433333333333333333
No 352
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=35.80 E-value=57 Score=31.63 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
|-+.+|-..|++|..+|+..||....|-.++++.
T Consensus 26 drIKeEf~~lqaq~hslk~E~eKla~EK~emqrh 59 (135)
T PF03920_consen 26 DRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRH 59 (135)
T ss_pred HHHHHHHHHHHHHHHhhhhhcchhhcccchHHHH
Confidence 3467888899999999999999886665555443
No 353
>PRK14011 prefoldin subunit alpha; Provisional
Probab=35.71 E-value=69 Score=31.72 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
|+|++++..+++.+.++.+.+..+|+.++. |. +|...|+|.|+.|.
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~--------a~---~e~~~~ie~L~~l~ 47 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDM--------MK---MELLKSIESMEGLK 47 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHHHHccC
Confidence 678888887777777777777766665443 22 23355666666544
No 354
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=35.57 E-value=2e+02 Score=29.47 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=29.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.+-|.+..+.+..++..-...-+...+..+..+.+|++.+++.++-..-|.+|+.+
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~ 108 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQA 108 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333334444446666777777777666666666653
No 355
>PTZ00464 SNF-7-like protein; Provisional
Probab=35.49 E-value=80 Score=33.36 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
.+|+..++.|..|....+.|+++++++++
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 356
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=35.26 E-value=3.4e+02 Score=33.14 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCcEEEecCCCCCCCCCCCCCCeeeeEEeeecCCCCeEEeecCccEEEEEecCCcEEEEec
Q 002602 485 SKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGS 545 (902)
Q Consensus 485 ~G~ly~WG~n~~GQLG~g~~~~~~~P~~v~~l~~~~I~~Ia~G~~htlaLt~~G~Vy~wG~ 545 (902)
++.||+.|-.+. ... ...-....|..-. ...+........+.-+..-+|++|+-|.
T Consensus 475 ~~~iYvvGG~~~-~~~-~~~VE~ydp~~~~---W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 475 NGKIYVVGGFDG-TSA-LSSVERYDPETNQ---WTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CCEEEEECCccC-CCc-cceEEEEcCCCCc---eeEcccCccccccccEEEECCEEEEEec
Confidence 899999986442 110 0111112221111 1112334456666666777999999995
No 357
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=1.1e+02 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=38.9
Q ss_pred CchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 817 NSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
.-..+.++|++.-+.|.-+|..|+.|-+.|..+.+.+..+|++.-.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778899999999999999999999999999999988887643
No 358
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=34.64 E-value=2.7e+02 Score=32.01 Aligned_cols=82 Identities=23% Similarity=0.245 Sum_probs=53.1
Q ss_pred ccCCCchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHH---HHHHHHHHhHHHHHHHHH---HHHhhh--------
Q 002602 813 TDLANSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLE---VELERTSRKLKETTQIAQ---EEAEKN-------- 878 (902)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~-------- 878 (902)
+||--.|..|.+||..-.-.||-|+.||++-..|.+-.|... .||+.+=-++++-...+. |++++-
T Consensus 118 SGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS 197 (558)
T PF15358_consen 118 SGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNS 197 (558)
T ss_pred ccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccch
Confidence 478888999999999999999999999997665555444333 455555556665544432 344321
Q ss_pred hHHHHHHHHHHHhcCc
Q 002602 879 KAAQEVIRSLTAQARP 894 (902)
Q Consensus 879 ~~~~~~~~~~~~~~~~ 894 (902)
-+-.|=+|.|-.||++
T Consensus 198 ~~LEekLr~lq~qLqd 213 (558)
T PF15358_consen 198 ALLEEKLRYLQQQLQD 213 (558)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 1224556666666654
No 359
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.53 E-value=3e+02 Score=29.47 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 002602 843 LEDLTRKSQFLEVELERTSRKLKETTQIA 871 (902)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (902)
.....++.+..+.+|..+..++++|-..|
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555666666666654444
No 360
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.44 E-value=1.2e+02 Score=25.42 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
.+..|+.+|..|+.+.+.+..+++.++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333333
No 361
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.23 E-value=2.8e+02 Score=29.04 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=48.9
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH--HHHHHHHHHHHhhhhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL--KETTQIAQEEAEKNKAAQEVIR 886 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 886 (902)
.+..++---.|.+|.-.|..||.+++...+.-+..|+.+.||- .-+..+|+|=..-+|+.+.+-.
T Consensus 13 KEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~ 79 (227)
T KOG3229|consen 13 KEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYE 79 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666678899999999999999988888888888888764 3456677777766676665543
No 362
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.17 E-value=20 Score=30.90 Aligned_cols=23 Identities=17% Similarity=0.697 Sum_probs=14.9
Q ss_pred cccCCcccccccccccccccCCc
Q 002602 651 ICSGCRNQFNFRRRRHNCYNCGL 673 (902)
Q Consensus 651 ~C~~C~~~F~~~r~rh~C~~CG~ 673 (902)
.|..|+.+..|.....+|..|+.
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~ 25 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQK 25 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--
T ss_pred cCCCCCCccEEeCCEEECccccc
Confidence 58889998888776777777754
No 363
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.12 E-value=1.8e+02 Score=29.49 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=35.7
Q ss_pred hhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 820 VIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
-+.+-|.+..+.+..++...+..-+..++..+..+.+|+..++++++-+.-|++|+.+.
T Consensus 43 pI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~ 101 (174)
T PRK07352 43 FLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI 101 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444444555566777777777777777777776654
No 364
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.07 E-value=1.7e+02 Score=29.69 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQ 872 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
++|+.++..|..|.+..+.||.+++++...++..-+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~ 80 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILT 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666666666666655554444433
No 365
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.03 E-value=2.1e+02 Score=30.78 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=29.2
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKA 880 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (902)
+++--..|..|+..|...++.|+.+......++.+.++.+-++-..+.+|.++.+-
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555555555555555555555555555555554433
No 366
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.03 E-value=1.8e+02 Score=36.41 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 842 QLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
++..+++.++..+.++..+++.+.-+..+|.|=.++..+|.+-+-++..+|
T Consensus 406 kl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeL 456 (717)
T PF09730_consen 406 KLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEEL 456 (717)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444447788888888888888888888888888887777655
No 367
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=34.03 E-value=76 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCEEEEEecC-cEEEEEEcCCcEEEE
Q 002602 348 SNIHMVACGE-FHTCAVTLSGDLYTW 372 (902)
Q Consensus 348 ~~I~~Va~G~-~hs~aLT~dG~Vy~W 372 (902)
..+++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 889999999999964
No 368
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.89 E-value=1.4e+02 Score=35.27 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTR 848 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~ 848 (902)
.|.+++.+++.+++.|++
T Consensus 338 ~l~~~~~~~~~~l~~l~~ 355 (451)
T PF03961_consen 338 ELEEELEELKEELEKLKK 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444433333333
No 369
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.88 E-value=1.2e+02 Score=31.75 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Q 002602 846 LTRKSQFLEVELERTSRKLKETTQIAQEEA 875 (902)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (902)
|.++.+..+.-++...++|++...|-.|||
T Consensus 122 l~~~~~e~~~~~~~~~~~Le~iAglT~eEA 151 (201)
T PF12072_consen 122 LEEREEELEELIEEQQQELEEIAGLTAEEA 151 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 333333344444444445555555555544
No 370
>PRK10132 hypothetical protein; Provisional
Probab=33.81 E-value=3e+02 Score=25.90 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=36.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHH-HHHhHHHHHHHHHHHhHHHHHHHHHHHHh----hhhHHHHHHHHHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLT-RKSQFLEVELERTSRKLKETTQIAQEEAE----KNKAAQEVIRSLTA 890 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 890 (902)
.--+.|..|+..|-..+++|- .-...-..|++++..+++.....|++-.. ....+|+.+.....
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~ 80 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADT 80 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333566667766666665543 23344456777777777777777664222 23344666655444
No 371
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.69 E-value=1.1e+02 Score=28.66 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=35.6
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
.+...=..|.+|+..|+.++..|-++=..+..|.+.+.+++.+.-.
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444567888889999999988888888888888888877655
No 372
>PF14992 TMCO5: TMCO5 family
Probab=33.52 E-value=1.4e+02 Score=32.72 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=8.7
Q ss_pred hhhHhhhhhhhhhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRA 841 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~ 841 (902)
+-|.+.|+.|.+.|..||.
T Consensus 73 ~~LE~~ne~l~~~~~elq~ 91 (280)
T PF14992_consen 73 AKLEKENEHLSKSVQELQR 91 (280)
T ss_pred HHHhhhhHhhhhhhhhhhh
Confidence 3344445555444444444
No 373
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.52 E-value=1.6e+02 Score=32.06 Aligned_cols=58 Identities=9% Similarity=0.234 Sum_probs=30.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRS 887 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (902)
..+.+++..++++|++|-.+.+....+++..++++.+.=.--++=-.+.+..++=|+.
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555555555555555444333333344444554543
No 374
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.48 E-value=2.3e+02 Score=24.28 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCc
Q 002602 842 QLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGS 896 (902)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (902)
.|.+|+.|.-.++.-|+++.+ .+.+-..+...-++-++.|..+|+++.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~-------~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELND-------VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444433 223333333444556666666777665
No 375
>PRK14154 heat shock protein GrpE; Provisional
Probab=33.37 E-value=1.9e+02 Score=30.47 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=30.1
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
++.+++..+-|.....+|+|+.++++++.+....++.++.
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a 100 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFG 100 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777788888888899999988776666665544
No 376
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.22 E-value=1.9e+02 Score=31.18 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHH
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVEL 857 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~ 857 (902)
+|-..|.++++.|+.+.+.++...
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~ 72 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYN 72 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444333333
No 377
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.19 E-value=3e+02 Score=27.46 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=30.0
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+..-|.+..+.+.+++...+..-+...+..+..+.+|...+++.++-+.-|++++.+.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~ 90 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKM 90 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444443333344444455566666666655555555555443
No 378
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.15 E-value=2.5e+02 Score=26.64 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=50.6
Q ss_pred cCceEEEE-ecCCCceeEEEEEeCCCCeEEEecCCccee-------EecceeeeeecccCChhhhcCCCCCCCCCeEEEE
Q 002602 23 KGTYLLKY-GRRGKPKFCPFRLSSDEKLLIWYAGKEEKQ-------LKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLI 94 (902)
Q Consensus 23 ~Gt~l~K~-~r~~kp~~r~f~l~~d~~~l~W~~~~~~~~-------i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSii 94 (902)
+|-..+|- ++++| |.++|.|-.. -|-..++.+.+. ..+++. .|=.|.. +++ .-..+-+.||.|=
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~S--GLYy~~Kgksk~srdL~cl~~f~~~-nvY~~~~---~kK-k~kAPTd~~F~~K 74 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSS--GLYYFPKEKTKNTRDLACLNLLHGH-NVYTGLG---WRK-KYKSPTDYCFGFK 74 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCC--eeEEccCCCcCCHHHHHHHHhcccC-cEEEEec---hhh-ccCCCCCceEEEe
Confidence 46777786 77776 5566777766 333333222221 222222 1333322 111 1224556788885
Q ss_pred EcC------cee-eEEeCCHHHHHHHHHHHHHHH
Q 002602 95 YRN------RSL-DLICKDKDEAELWFTALRALI 121 (902)
Q Consensus 95 y~~------rtL-DLva~~~~e~~~Wv~gL~~Li 121 (902)
... +.| -|.|+|++.++.|+.+||-.-
T Consensus 75 ~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 75 AVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 521 333 378889999999999999654
No 379
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.04 E-value=1.3e+02 Score=32.69 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.9
Q ss_pred CCCchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 002602 815 LANSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVE 856 (902)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (902)
|..-....|-+++.|..|.+|+.+++.++..|+.+.+.+...
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455678899999999999999988888888888877766
No 380
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.99 E-value=96 Score=37.31 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=6.7
Q ss_pred HHHhHHHHHHHHHHHH
Q 002602 860 TSRKLKETTQIAQEEA 875 (902)
Q Consensus 860 ~~~~~~~~~~~~~~~~ 875 (902)
..++|++...|-.|||
T Consensus 134 ~~~~le~~a~lt~~ea 149 (514)
T TIGR03319 134 QREELERISGLTQEEA 149 (514)
T ss_pred HHHHHHHHhCCCHHHH
Confidence 3334444444444443
No 381
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.93 E-value=1.5e+02 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=38.4
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+.|.++.--+.+.+|...++.|-++++.|...|-.|++..++++-+
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~e 50 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999888889999999998888888888887643
No 382
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=32.89 E-value=1.4e+02 Score=35.48 Aligned_cols=91 Identities=29% Similarity=0.416 Sum_probs=51.2
Q ss_pred cCceEEEE-ecCCCceeEEEEEeCCCCeEEEecCCc----cee------EecceeeeeecccCChhhhcCCCCCCCCCeE
Q 002602 23 KGTYLLKY-GRRGKPKFCPFRLSSDEKLLIWYAGKE----EKQ------LKLSHVSRIIPGQRTAVFQRYPQPEKEYQSF 91 (902)
Q Consensus 23 ~Gt~l~K~-~r~~kp~~r~f~l~~d~~~l~W~~~~~----~~~------i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~F 91 (902)
.|..-+|- +||+|.|.. |.|-.- -| +|+.|. .+. +.=++|.-..-|++ +|+ .+-+.||
T Consensus 320 ~GfL~~K~dgkKsWKk~y-f~LR~S--GL-Yys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rK-----kyk--sPTd~~f 388 (622)
T KOG3751|consen 320 QGFLYLKEDGKKSWKKHY-FVLRRS--GL-YYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRK-----KYK--SPTDYGF 388 (622)
T ss_pred cceeeecccccccceeEE-EEEecC--cc-eEccCCCCCCchhhHHHHhcccCceEEeecchh-----ccC--CCCCceE
Confidence 46777777 888886654 455544 23 444332 222 22233333333321 233 3345566
Q ss_pred EEEEc-----Cceee-EEeCCHHHHHHHHHHHHHHHHcc
Q 002602 92 SLIYR-----NRSLD-LICKDKDEAELWFTALRALISED 124 (902)
Q Consensus 92 Siiy~-----~rtLD-Lva~~~~e~~~Wv~gL~~Li~~~ 124 (902)
.|=-. .|.|- |.|+|...+..|++.||.+--..
T Consensus 389 ~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG~ 427 (622)
T KOG3751|consen 389 CIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYGM 427 (622)
T ss_pred EeeeccccCcccceeeeecccchhHHHHHHHHHHHHHHH
Confidence 66552 26776 46678889999999999875443
No 383
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.88 E-value=1.6e+02 Score=36.52 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=30.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhh---HHHHHHHHHHHhcCc
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNK---AAQEVIRSLTAQARP 894 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 894 (902)
.++-++.|.+++..|++....|+.++.....++|++.+.+.+-.....++..... +-++..|.|-+|+-+
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555555555555555555444444433222222222222 233555566554443
No 384
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=32.85 E-value=2.5e+02 Score=28.00 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=28.6
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-+.+..+...+++..-..--+......+..+.+|++.+++.++-+.-|.+|+.+.
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~ 104 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEI 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333222223333333456666666666666666666666543
No 385
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.75 E-value=2.3e+02 Score=31.81 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=34.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
.+.+.+--+.|.+|...|..+++.|+++++.++.||..+++++++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555678888888889999999999999888888776554
No 386
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=32.74 E-value=8.8e+02 Score=28.55 Aligned_cols=26 Identities=15% Similarity=0.154 Sum_probs=17.7
Q ss_pred CCeEEeecCccEEEEEecCCcEEEEe
Q 002602 519 ISFCKVACGHSITIALTATGQVFSMG 544 (902)
Q Consensus 519 ~~I~~Ia~G~~htlaLt~~G~Vy~wG 544 (902)
..-+-+.-+..+.++=+++|.+|..-
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeee
Confidence 33445556677777778888888753
No 387
>PRK12704 phosphodiesterase; Provisional
Probab=32.71 E-value=97 Score=37.32 Aligned_cols=66 Identities=20% Similarity=0.370 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
+.|.+..+.|.+.-..|..+-++|.++-+..+..+++..++|++...|-.|||. +.+++.+..+++
T Consensus 103 e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~-----~~l~~~~~~~~~ 168 (520)
T PRK12704 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK-----EILLEKVEEEAR 168 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHH
No 388
>PRK14127 cell division protein GpsB; Provisional
Probab=32.70 E-value=72 Score=30.07 Aligned_cols=37 Identities=11% Similarity=0.384 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+.+.++++.|..++..|+.+.+.++.+|.+++.++.+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556666677777777777777777777777776653
No 389
>PRK04406 hypothetical protein; Provisional
Probab=32.58 E-value=92 Score=27.31 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=4.0
Q ss_pred HHHHHhcCcC
Q 002602 886 RSLTAQARPG 895 (902)
Q Consensus 886 ~~~~~~~~~~ 895 (902)
+.|..+|+++
T Consensus 49 ~~L~~rl~~~ 58 (75)
T PRK04406 49 KYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHhh
Confidence 3334444443
No 390
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.53 E-value=84 Score=27.29 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=10.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQF 852 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (902)
+-+.||+.|.+.+.||..|++++..
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 391
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=32.50 E-value=55 Score=42.10 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHH-------HHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 842 QLEDLTRKSQFLEVELERTSRKLKET-------TQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
+++.|+++.+..+.||+++++++... -.+..+|.+|....++-|+.|.++|+.+
T Consensus 812 e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 812 ELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444455555555555432 2466677777778888888887766554
No 392
>PRK14160 heat shock protein GrpE; Provisional
Probab=32.50 E-value=2.2e+02 Score=30.11 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQ 872 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
++..|++++..|+++.+.+..++.+++...+..-..+.
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443333333
No 393
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=32.49 E-value=4e+02 Score=24.47 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=32.7
Q ss_pred chhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 818 SEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
+....+-|.++|+.-..+..+|..-+.+|+...+.++.+-+.++..+
T Consensus 19 t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l 65 (99)
T PF10046_consen 19 TNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL 65 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899999999888888877777777666665544444333
No 394
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.44 E-value=81 Score=37.06 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=12.4
Q ss_pred hhhhHhhhhhhhhhHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRA 841 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~ 841 (902)
.+.|.+-|+.|.+|.++||.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 75 LAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665
No 395
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.30 E-value=2.7e+02 Score=26.91 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
.|..|+..++.+++....+......+|+...+.+.+|=.-=..|--|+-++-+-|..|-.++
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~ 68 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREEL 68 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555556666666655555555444
No 396
>PRK15396 murein lipoprotein; Provisional
Probab=32.15 E-value=1.2e+02 Score=26.87 Aligned_cols=31 Identities=10% Similarity=0.328 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
|..+|+.|.++|..|.+.-+.....++..+.
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444443
No 397
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.12 E-value=1.3e+02 Score=26.68 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=23.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
+..++-|++|+..||..+..|-.+.+....|-.+++
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888877777666555544444443
No 398
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.87 E-value=2.1e+02 Score=28.43 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=29.2
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+..+.+..++......-+...+..+..+.+|...++++++.+.-|.+|+.+.
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~ 87 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENV 87 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444433333334444455566666666555555555555443
No 399
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=31.78 E-value=46 Score=35.57 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=44.2
Q ss_pred CCCchhhhhhhHhhhhhhh-------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 002602 815 LANSEVIFEYSKQTNDNFN-------QEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAA 881 (902)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (902)
|+.-++..++||+.-+-|. ++|+..++-|=-|.++.+..+.+||+++|-++..-..++++-..-.|+
T Consensus 245 LAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a~ 318 (330)
T KOG2991|consen 245 LAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDAI 318 (330)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 4444555566666555554 455555555667888999999999999888877766666654444443
No 400
>PLN02372 violaxanthin de-epoxidase
Probab=31.67 E-value=1.2e+02 Score=35.01 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=23.4
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLK 865 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (902)
+.++.+...+.+.|.+||++++....+|=++. .+...++++++..+
T Consensus 375 ~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 420 (455)
T PLN02372 375 KTIVKEARQIEEELEKEVEKLGKEEESLFKRV-ALEEGLKELEQDEE 420 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34444555555555555666655444443332 45555555555443
No 401
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.65 E-value=2.5e+02 Score=28.41 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=32.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+..+...+++...+.--+...+..+..+.+|+..++++++-..-|.+|+.+.
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~ 98 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKL 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444333333334444456677777777777777777666554
No 402
>PRK10698 phage shock protein PspA; Provisional
Probab=31.62 E-value=3e+02 Score=29.22 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh-----hhHHHHHHHHHHHhc
Q 002602 834 QEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK-----NKAAQEVIRSLTAQA 892 (902)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 892 (902)
+.+.+.-++-+.++++.+..+.++++..++++-|+.--.|+-|| -+.+.+-|..|..|+
T Consensus 45 ~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 45 STSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667889999999999999999999999854444443 233444444544443
No 403
>PRK04325 hypothetical protein; Provisional
Probab=31.56 E-value=88 Score=27.29 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=4.5
Q ss_pred HHHHHHhcCcC
Q 002602 885 IRSLTAQARPG 895 (902)
Q Consensus 885 ~~~~~~~~~~~ 895 (902)
++.|+.+|+++
T Consensus 46 l~~L~~rl~~~ 56 (74)
T PRK04325 46 LRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHh
Confidence 33344444443
No 404
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=31.45 E-value=1.7e+02 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=15.5
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLE 854 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (902)
|++.=+--.+|+.+|...|.+|+.|....-
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt 39 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYT 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344434445556666666666655554433
No 405
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=31.41 E-value=1.9e+02 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
.+..++.++++|+..++.+.+..+.++++.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 92 (322)
T TIGR01730 61 DYQLALQAALAQLAAAEAQLELAQRSFERAER 92 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665555555443
No 406
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=31.38 E-value=2.6e+02 Score=27.06 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=30.1
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+..+.+...+..-+.--+...+.....+.+|+..+++..+...-|.+|+.+.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~ 87 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKL 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333344444466666666666666666666666544
No 407
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=31.24 E-value=2.4e+02 Score=28.19 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=32.9
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+.+-|.+..+.+.+++......-+.........+.+|...++++++.+.-|++|+.+.
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~ 90 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQ 90 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444444444566666666666666666666666543
No 408
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.22 E-value=1.7e+02 Score=29.42 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=9.9
Q ss_pred hhhhHhhhhhhhhhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQ 842 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~ 842 (902)
+..|+.-...|.+++..|+++
T Consensus 81 i~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555443
No 409
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.20 E-value=1.1e+02 Score=33.55 Aligned_cols=61 Identities=25% Similarity=0.259 Sum_probs=36.5
Q ss_pred hhhhhhHhhhhhhhhhHHHHHHHHHHHH-------HHHhHHHHHHHHHHHhHHHHHHH---HHHHHhhhhH
Q 002602 820 VIFEYSKQTNDNFNQEPDVLRAQLEDLT-------RKSQFLEVELERTSRKLKETTQI---AQEEAEKNKA 880 (902)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 880 (902)
.+...++..-..+.+++++++.++.+|+ .|.+....||++.+|+++---++ --||-+|+.+
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4556677777777788777777766554 45555555666666665532221 2366666554
No 410
>PRK14150 heat shock protein GrpE; Provisional
Probab=31.19 E-value=2.5e+02 Score=29.20 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHH----HHHHhHHHHHHHHHHHhHHHHH
Q 002602 832 FNQEPDVLRAQLEDL----TRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
+.+++..|+++++.| +.+......+++.++|+.+.-.
T Consensus 39 ~~~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~ 79 (193)
T PRK14150 39 ADARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDV 79 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 3344444455555555544433
No 411
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=31.01 E-value=73 Score=36.32 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
|.+++++|++|.+.+..+...++.|++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888887754
No 412
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=30.89 E-value=16 Score=38.87 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
.+..|..|...||.||..|+.+++.+-.|.+++++ ++++- .|.-| +|..++|-.|..|..
T Consensus 52 ~~~~~~~E~l~LQrQi~qLt~~lQ~~~~eneklk~-~~K~~-kalle-Skl~~~kk~IdrlK~ 111 (249)
T PF10422_consen 52 QSSKLVDETLLLQRQITQLTSQLQSQKQENEKLKE-LQKTQ-KALLE-SKLSNKKKEIDRLKL 111 (249)
T ss_dssp ---------------------------------------------------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 45567888888999999998888888777666532 22211 11122 456777777776553
No 413
>PRK00846 hypothetical protein; Provisional
Probab=30.85 E-value=91 Score=27.54 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcCccC
Q 002602 840 RAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPGSAL 898 (902)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (902)
.+.+..|+.+.-.|+.-|+.+.+.+-+-+.. ..--++-|+.|+.+||+|.+-
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccc
Confidence 3445555555555555555554433332222 122344556666677766543
No 414
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.83 E-value=1.3e+02 Score=35.88 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=23.1
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
+.++++.-.....|+.+|++.-.+|....++.+.++++++|.+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i 123 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLI 123 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554444444445555555544433
No 415
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.83 E-value=1.6e+02 Score=31.19 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=26.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.-..|..++..++.+|..|+.+.+.++.+|++.+. ++.+.+|+..+++
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~--k~~~l~ar~~~A~ 147 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARA--RQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33445555666666666666666666666666543 3444455555543
No 416
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=30.82 E-value=78 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCEEEEEecC-CEEEEEEcCCcEEEE
Q 002602 571 RYIEDIACGS-YHIAVVSSKSEVYTW 595 (902)
Q Consensus 571 ~~V~~Ia~G~-~hs~aLT~~G~VytW 595 (902)
..+.+|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 889999999999863
No 417
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=30.76 E-value=1.2e+02 Score=21.97 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERT 860 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~ 860 (902)
.+|-++.+.|+.+.|++...|+.+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666555544
No 418
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.52 E-value=90 Score=34.07 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 824 YSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+|..--+.|.+||.+||-||+.+..+.++..+.-+..-..+++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 419
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.45 E-value=79 Score=29.07 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
+....++.+|+++++.|+.+....+.+++-.++++
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888877777777766666544
No 420
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=30.32 E-value=49 Score=33.11 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=14.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQF 852 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (902)
+.|.+.-+.|.++..++++++++++++.+.
T Consensus 21 ~~l~~~~~~l~~~~~r~~ae~en~~~r~~~ 50 (165)
T PF01025_consen 21 EELEKEIEELKERLLRLQAEFENYRKRLEK 50 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555433
No 421
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=30.32 E-value=62 Score=25.21 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
|.++|+.+|.+...+-.+....+.++-++.|++++-+.
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI~ 39 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLIN 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 78899999999998888888888999999999887554
No 422
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=30.27 E-value=1.7e+02 Score=30.93 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=34.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHh-----hhhHHHHHHHHHHHhcCcC
Q 002602 829 NDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE-TTQIAQEEAE-----KNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 895 (902)
=+.+..+..++...++.|+++.+.++.+|+........ ++..|..++. ..+.+.+|||-+.++-+.|
T Consensus 32 LD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~~v 104 (212)
T COG3599 32 LDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQRV 104 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555443221 2333332211 2345677888777654433
No 423
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=30.23 E-value=1.7e+02 Score=30.37 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002602 843 LEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (902)
++.|..+.++.+.++.....+++||-.+|.+=-.|+ .||++.|+
T Consensus 48 ~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~---eEVarkL~ 91 (205)
T KOG1003|consen 48 MKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY---EEVARKLV 91 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 445556666666777777777777777665444344 46777765
No 424
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=29.97 E-value=99 Score=36.09 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=46.5
Q ss_pred hhhHhhhhhhhhhHHHHHH---------HHHHHHHHHhH-HHHHHHHHHHhHHHHHHHHHH--HHhhhhHHHHHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRA---------QLEDLTRKSQF-LEVELERTSRKLKETTQIAQE--EAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 890 (902)
+++.+.+.++.+|+..+.. -|+.|+++.+. .+.||+++.+++.+.-.-.++ |..=...++.++.-.+.
T Consensus 313 ~~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~~ 392 (417)
T TIGR01035 313 EEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPTV 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877755 35677777765 568888887776321111111 22224566666666677
Q ss_pred hcCcCcc
Q 002602 891 QARPGSA 897 (902)
Q Consensus 891 ~~~~~~~ 897 (902)
+||++..
T Consensus 393 ~lk~~~~ 399 (417)
T TIGR01035 393 RLKQLAD 399 (417)
T ss_pred HHHHHhc
Confidence 7887654
No 425
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.93 E-value=1.6e+02 Score=36.18 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQ 872 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
-.+|+..|+.|++.|..+++..+.+++.++..+++...-..
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777766665544433
No 426
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=29.88 E-value=92 Score=36.57 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 830 DNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
|-+++|-+-||+|+.+||.+||.+-.|-.++++
T Consensus 26 dRIKdEfqflqaqyhslkleceKlA~EKteMqR 58 (705)
T KOG0639|consen 26 DRIKEEFQFLQAQYHSLKLECEKLASEKTEMQR 58 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 456789999999999999999988766555443
No 427
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=29.80 E-value=9.4e+02 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCeEEEEe-cCCEEEEEEcCCcEEEEeCCCCCCCCCCCCcccccceEee--cCCCCCEEEEEecCcEEEEEEcCCcEEEE
Q 002602 296 LDAQSIAC-GSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLID--ALNGSNIHMVACGEFHTCAVTLSGDLYTW 372 (902)
Q Consensus 296 ~~I~~Ia~-G~~hs~~Lt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hs~aLT~dG~Vy~W 372 (902)
.+|+.+.- -..+-++|+++|.|+..- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 35555554 346788899999988773 32322 111222221 11122344445666678899999999988
Q ss_pred c
Q 002602 373 G 373 (902)
Q Consensus 373 G 373 (902)
-
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 428
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=29.78 E-value=1.3e+02 Score=38.48 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=26.0
Q ss_pred HhhhhhhhhhHHHHHHH-----------------------HHHHHHHHhHHHHHHHHHHHhH
Q 002602 826 KQTNDNFNQEPDVLRAQ-----------------------LEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
.|.-.-|++||.|||++ +++|.+|.+..|.++.++++.-
T Consensus 360 aKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW 421 (1221)
T KOG0245|consen 360 AKLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETW 421 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688999999984 5566666666666666655433
No 429
>smart00340 HALZ homeobox associated leucin zipper.
Probab=29.64 E-value=65 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=16.6
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLT 847 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (902)
-+-||+.-+.|.+|-.+||.+|.+|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665554
No 430
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=29.61 E-value=2.1e+02 Score=35.61 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=44.5
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+..+....+...+++..|+.++..|++++...+.+..++.+.++++|....+-...
T Consensus 229 ~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (670)
T KOG0239|consen 229 IKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSD 284 (670)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777888888999999999999999999999999998888776443
No 431
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=29.57 E-value=1.7e+02 Score=36.20 Aligned_cols=94 Identities=21% Similarity=0.427 Sum_probs=55.2
Q ss_pred eEEEEecC--C--CceeEEEEEeCCCCeEEEecCCc-ceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEE--E---
Q 002602 26 YLLKYGRR--G--KPKFCPFRLSSDEKLLIWYAGKE-EKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLI--Y--- 95 (902)
Q Consensus 26 ~l~K~~r~--~--kp~~r~f~l~~d~~~l~W~~~~~-~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSii--y--- 95 (902)
.|.-|+++ | -++.|+|.|... .+..|+.++ ...++ |+....|..+.+=.+ .+.....+-|.++ |
T Consensus 9 W~y~~g~~kig~~~~~~Ry~vl~~~--~~~~yK~~P~~~~~p---irs~~id~~~rVed~-Gr~~~~g~~~yvl~~Yn~~ 82 (719)
T PLN00188 9 WMVRYGRRKIGRSYIHMRYFVLESR--LLAYYKKKPQDNQVP---IKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK 82 (719)
T ss_pred EEEEEcccccccccceeEEEEEecc--hhhhcccCCcccccc---ceeeccCCCceEeec-CceEEcCceEEEEEEecCC
Confidence 45666554 3 367788888876 565555332 22222 333344444422211 1122222333332 2
Q ss_pred -cCceeeEEeCCHHHHHHHHHHHHHHHHccc
Q 002602 96 -RNRSLDLICKDKDEAELWFTALRALISEDN 125 (902)
Q Consensus 96 -~~rtLDLva~~~~e~~~Wv~gL~~Li~~~~ 125 (902)
.++-+-+-|.+.|||..|+..|+..+.+..
T Consensus 83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~ 113 (719)
T PLN00188 83 EKYHRITMAAFNIQEALIWKEKIESVIDQHQ 113 (719)
T ss_pred CccccEEEecCCHHHHHHHHHHHHHHHhhhc
Confidence 237899999999999999999999999653
No 432
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.56 E-value=96 Score=32.78 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=35.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH---HHHHHHHHHhhhhHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE---TTQIAQEEAEKNKAA 881 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 881 (902)
+..-|+.++.|..+|+.++++.+.+.+..+.+...++||.++ =.....||.+|....
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 334456666777777777777777766666666666665553 344556666665543
No 433
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=29.56 E-value=1.9e+02 Score=25.24 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNK 879 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (902)
++.+.+|-++|.+|.-|-++++....-+.. ...-|++|+++-+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~----~~qAAk~eaarAn 66 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRS----DVQAAKDEAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHhHHHHHH
Confidence 455666667777777776666666554433 2334566666544
No 434
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=29.54 E-value=60 Score=42.38 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHH-------HHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 841 AQLEDLTRKSQFLEVELERTSRKLKET-------TQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
++++.|+++.+..+.||+++++++... -.+..+|-+|....++-|..|...|+.+
T Consensus 929 ~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l 990 (995)
T PTZ00419 929 KELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEEL 990 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555321 2455566666666666666666554443
No 435
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.50 E-value=18 Score=45.31 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhhhHhhhhhhh---hhHHHHHHHHHHHHH---HHhHHHHHHHHHHHhHH--------------------HHHHHHHHHH
Q 002602 822 FEYSKQTNDNFN---QEPDVLRAQLEDLTR---KSQFLEVELERTSRKLK--------------------ETTQIAQEEA 875 (902)
Q Consensus 822 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 875 (902)
++.|++.|+.|. +|...||-++..|++ |.+.++.++++|++|++ +...+-.||.
T Consensus 276 i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 276 IDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHhcCcC
Q 002602 876 EKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~ 895 (902)
.|..+.+.-|..+..|+.++
T Consensus 356 ~~~~~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 356 KKARALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------
T ss_pred HHhHHHHHHHHHHHHHHHHH
No 436
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.39 E-value=1.5e+02 Score=34.71 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=36.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh----HHHHHHHHHHHHhhhhHHHHHHHHHHHhcCc
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRK----LKETTQIAQEEAEKNKAAQEVIRSLTAQARP 894 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (902)
|.++..+|+.|+++|+.+-....++|.+.+++ .++..+-+++=.++.++.++-++.+.+++.+
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777664333 2233333444445556666666666665544
No 437
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.33 E-value=4.9e+02 Score=26.69 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=9.0
Q ss_pred HHHhhhhHHHHHHHHHH
Q 002602 873 EEAEKNKAAQEVIRSLT 889 (902)
Q Consensus 873 ~~~~~~~~~~~~~~~~~ 889 (902)
++++-.|++|-=||.|.
T Consensus 101 k~~a~~ke~kAqvkqLI 117 (215)
T COG3122 101 KQAALAKEYKAQVKQLI 117 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444556665666554
No 438
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=29.28 E-value=2.6e+02 Score=27.93 Aligned_cols=29 Identities=34% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhH
Q 002602 836 PDVLRAQLEDLTRKSQFLEVELERTSRKL 864 (902)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (902)
+-.|.+.|++|+++.+.+..+|++.=|+.
T Consensus 17 l~~l~~~Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 17 LYLLRAYIRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667666666665555444433
No 439
>PLN02943 aminoacyl-tRNA ligase
Probab=29.28 E-value=70 Score=41.52 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHH-------HHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 839 LRAQLEDLTRKSQFLEVELERTSRKLKET-------TQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
+.++++.|+++.+..+.||+++++++... -.+..+|-+|.+..++-|+.|...|..+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555422 2456667777777777776666644443
No 440
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.21 E-value=1.1e+02 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
|...-..|+++.+.|.++-+.+..|+++++.+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444433
No 441
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=29.16 E-value=32 Score=25.42 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=11.5
Q ss_pred ccccCCceeecCCCCccccccccCCCCCCCeeechhhhh
Q 002602 667 NCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFI 705 (902)
Q Consensus 667 ~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~ 705 (902)
.|..||..|..+-.. ...-.+||+.|-+
T Consensus 5 ~C~eC~~~f~dSyL~-----------~~F~~~VCD~CRD 32 (34)
T PF01286_consen 5 KCDECGKPFMDSYLL-----------NNFDLPVCDKCRD 32 (34)
T ss_dssp E-TTT--EES-SSCC-----------CCTS-S--TTT-S
T ss_pred hHhHhCCHHHHHHHH-----------HhCCccccccccC
Confidence 455566665444333 2367889999864
No 442
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=29.03 E-value=2.7e+02 Score=26.33 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=35.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIA 871 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (902)
+-..++.++++|..+...|++|+.....-..|-.+.++++.......
T Consensus 6 ~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~ 52 (116)
T PF10552_consen 6 LMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSRVYEL 52 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999888777777777777777555444
No 443
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.00 E-value=2.1e+02 Score=30.11 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 837 DVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.+..++.+.|+++.+..+.++.+..++++.|+.--.|+.|+
T Consensus 47 a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr 87 (221)
T PF04012_consen 47 ARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR 87 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33334555788888888999999999999998776666663
No 444
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.90 E-value=1.3e+02 Score=29.30 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=39.4
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
-++.+.-+.|...+..|..+++.|+++......+++...++++++..
T Consensus 90 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 90 KDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677889999999999999999999999999999888887544
No 445
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.84 E-value=3.1e+02 Score=24.79 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=24.9
Q ss_pred hhhHhhhhhhhhhHHHHHHHHH------HHHHHHhHHHHHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLE------DLTRKSQFLEVELERTSR 862 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 862 (902)
+.+..-|..|.+||+-||.||+ .....-..+..|+++++.
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566889999999999776 333333344455555544
No 446
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.84 E-value=2.4e+02 Score=31.44 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=39.7
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQ 872 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (902)
+.|++.-..|.||-..|+.++..++.+|..+..++..+.+..-..-+-|.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999999999988888887775555444443
No 447
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.78 E-value=3e+02 Score=26.02 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=48.6
Q ss_pred ecCCCceeEEEEEeCCCCeEEEec-CC-----cceeEecceeeeeecccCChhhhcCCCCCCCCCeEEEEEcC-ceeeEE
Q 002602 31 GRRGKPKFCPFRLSSDEKLLIWYA-GK-----EEKQLKLSHVSRIIPGQRTAVFQRYPQPEKEYQSFSLIYRN-RSLDLI 103 (902)
Q Consensus 31 ~r~~kp~~r~f~l~~d~~~l~W~~-~~-----~~~~i~l~~I~eIr~G~~t~~f~~~~~~~~~~~~FSiiy~~-rtLDLv 103 (902)
....-.+.|+|-|=+. ..++-.. ++ -++.++|+.|.=.+.- ++ +.....|-|.-.- ..+-++
T Consensus 23 ~~~qe~~eRyLvLFp~-~LlilS~s~r~sGf~yqGkLPL~~i~v~~lE-d~---------e~~~~aFeI~G~li~~i~v~ 91 (111)
T cd01225 23 GAGEEKRERYLVLFPN-VLLMLSASPRMSGFIYQGKLPLTGIIVTRLE-DT---------EALKNAFEISGPLIERIVVV 91 (111)
T ss_pred CCccccceeEEEEcCc-eEEEEEcCCCccceEEeeeecccccEEechH-hc---------cCccceEEEeccCcCcEEEE
Confidence 3344567788888776 2222211 22 1445777655432211 11 2224567666443 788899
Q ss_pred eCCHHHHHHHHHHHHHHH
Q 002602 104 CKDKDEAELWFTALRALI 121 (902)
Q Consensus 104 a~~~~e~~~Wv~gL~~Li 121 (902)
|.+.+|++.|+.-|+..+
T Consensus 92 C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 92 CNNPQDAQEWVELLNANN 109 (111)
T ss_pred eCCHHHHHHHHHHHHhhc
Confidence 999999999999998754
No 448
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.46 E-value=1.3e+02 Score=31.24 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=4.9
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSR 862 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (902)
..-..++.+.+..|.+.+..+-.+++.|+.+....+..|..++.
T Consensus 80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~ 123 (194)
T PF08614_consen 80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEA 123 (194)
T ss_dssp ----------------------------------HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 33345566666666666666666666555555555555444444
No 450
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=28.35 E-value=1.1e+02 Score=36.49 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=29.3
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQ 869 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (902)
|+|.--|++|.-|.+-.+.--..|++|...+|+||++.++++++|-.
T Consensus 332 DeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 332 DELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444333345677777778888888888877743
No 451
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.22 E-value=4e+02 Score=27.68 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=14.4
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTR 848 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (902)
++.+...|.-|..|+..|+.|.+++.+
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556555555555543
No 452
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=28.17 E-value=2.4e+02 Score=29.68 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=25.3
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
+.+++.+++-.+.|.+.+......|+...++ .+.++..+++=+..|.+|-+.
T Consensus 103 K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqr-------y~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 103 KEVIEGYKKNEETLKKCIEEYEERLKKEEQR-------YQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444 444444444444455555443
No 453
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.07 E-value=1.2e+02 Score=33.20 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=10.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQF 852 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (902)
....|.+-+..++.|++.+++++..
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~ 187 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNN 187 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 454
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.89 E-value=2.8e+02 Score=32.28 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHhHHHHHHHHHHHHhhhhHHHH
Q 002602 861 SRKLKETTQIAQEEAEKNKAAQE 883 (902)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~ 883 (902)
+..|+..++-+..++++-..+.|
T Consensus 233 ~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 233 ESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333
No 455
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.82 E-value=3e+02 Score=27.66 Aligned_cols=55 Identities=5% Similarity=-0.047 Sum_probs=24.7
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
..-|.+..+....++..-...-+.+.+-.+..+.+|++..++.++.+.-|.+++.
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333222233333333555555555555555555555544
No 456
>PHA01754 hypothetical protein
Probab=27.79 E-value=68 Score=26.58 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhh------hhHHHHHHHHHHH
Q 002602 865 KETTQIAQEEAEK------NKAAQEVIRSLTA 890 (902)
Q Consensus 865 ~~~~~~~~~~~~~------~~~~~~~~~~~~~ 890 (902)
+-||++|.||.+- -+.|.||||.+..
T Consensus 24 DLamaLATee~EeVRkSevfqkA~EViKvvke 55 (69)
T PHA01754 24 DLTMALATEDKEEVRKSEVFQKALEVVKVVKE 55 (69)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899888664 3568999998764
No 457
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=27.77 E-value=1.9e+02 Score=34.68 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=42.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
..++-+|.|..+.+.|++||.++-.-..| .+.||++++|.-+|--.+.--.-.|---+|.+=|||.+
T Consensus 220 ts~E~~K~~vs~~e~i~~LQeE~l~tQ~k---YQreLErlEKENkeLr~lll~kd~k~i~~kklKkSLID 286 (980)
T KOG0447|consen 220 TSYEQQKRKVSDKEKIDQLQEELLHTQLK---YQRILERLEKENKELRKLVLQKDDKGIHHRKLKKSLID 286 (980)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 34667888999999999999876555555 34455555555444433333333334456777778776
No 458
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.67 E-value=1.1e+02 Score=29.06 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 828 TNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
.......|+.+|++++..|+.+...++.+|+.++
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666555554
No 459
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=27.66 E-value=24 Score=41.23 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=39.5
Q ss_pred ccCCcc-cccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhccCC
Q 002602 652 CSGCRN-QFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNTTS 711 (902)
Q Consensus 652 C~~C~~-~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~~~ 711 (902)
|..|.. .++-..+...|+.|...|+-.|..+.... .+.- -.+-++.|+.|-.....+.
T Consensus 171 c~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~-~l~~-D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 171 CSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKD-ELAG-DPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred eeeeecCCcCccceeeeecccccHHHHHhccCCCCH-hhcc-CccceEeehhhccchhhcc
Confidence 555543 24433389999999999999998875333 3332 3577999999977654433
No 460
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.64 E-value=1.5e+02 Score=33.46 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=22.6
Q ss_pred hhhhhhHhhhhhhhhhHHHHHH-------HHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 820 VIFEYSKQTNDNFNQEPDVLRA-------QLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
.+.+.|...-+.|.++...|.. .+..|..+-+.++.|+..+++..+|
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555544 3334444444444555555444443
No 461
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.50 E-value=2.9e+02 Score=25.79 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHH--HHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhc
Q 002602 833 NQEPDVLRAQLEDLTRKSQFLEVELERT--SRKLKETTQIAQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
..++.+|++.+....++.+..|.+++.+ ++.+.+--...+|=..+.++-.+=|+.++.|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666555 44443333333333334455555556655543
No 462
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=27.45 E-value=2.4e+02 Score=30.53 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=27.1
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
.+-+++-.+.+.+++..-...-+..++..+..+.+++..+++.++.+.-|++|+.+-
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~ 87 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQ 87 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333332233333333455556666666665555555555543
No 463
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.43 E-value=1.2e+02 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKET 867 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (902)
..++|++|++..+++.++.+.+++.++.+.+.-
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666666666666655543
No 464
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=27.42 E-value=3.6e+02 Score=27.01 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH---HHHHHHHHHhhhhHHHHHHHHHHH
Q 002602 831 NFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE---TTQIAQEEAEKNKAAQEVIRSLTA 890 (902)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 890 (902)
+..+|+.+++.||..|..+...++..+.+..+++++ ++.-+..+...|.-.+|=|.-|..
T Consensus 64 v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~ 126 (152)
T PF07321_consen 64 VSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAE 126 (152)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766666666553 344455555555555555555554
No 465
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.35 E-value=88 Score=29.23 Aligned_cols=29 Identities=7% Similarity=-0.007 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
+..+|++|++.++++.+.++.+-++++++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 466
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.26 E-value=1.2e+02 Score=28.46 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=15.4
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERT 860 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (902)
+++.-+.|.+.+.+|+.+++.++.+.++.+..+++.
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 467
>PRK14139 heat shock protein GrpE; Provisional
Probab=27.24 E-value=3e+02 Score=28.52 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=26.5
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTS 861 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (902)
++.|++-.+-|.....++++..++++++.+....++.++.
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a 80 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFA 80 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777788888888666555555443
No 468
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.16 E-value=20 Score=41.97 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=32.5
Q ss_pred cccCCcccccccccccccccCCceeecCCCCccccccccCCCCCCCeeechhhhhhhcc
Q 002602 651 ICSGCRNQFNFRRRRHNCYNCGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNT 709 (902)
Q Consensus 651 ~C~~C~~~F~~~r~rh~C~~CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~ 709 (902)
.|.-|-....+-. +. +||.+||..|.-...... ..+..+-|..|+..+.-
T Consensus 188 ~CPICL~~~~~p~-~t---~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 188 QCPICLEPPSVPV-RT---NCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITL 237 (513)
T ss_pred cCCcccCCCCccc-cc---ccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccc
Confidence 4555654444322 12 499999999976543322 34677889999998754
No 469
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=27.15 E-value=1.1e+02 Score=33.14 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=15.0
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRK 849 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~ 849 (902)
+..|++|.+|++.|+.++.+|+..
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhch
Confidence 455666666666666666665553
No 470
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.13 E-value=1.8e+02 Score=25.84 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHH-hcCcCcc
Q 002602 843 LEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTA-QARPGSA 897 (902)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 897 (902)
++.+-.+.+.-+.-|..+-+..++++.+++.=..+...|+.=|+.|.. ++++...
T Consensus 16 LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l~~g~~~~~~~ 71 (80)
T PRK14067 16 LQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRLFTEGEVKDFDP 71 (80)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 444455666678888899999999999999999999999988888876 6666544
No 471
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=27.12 E-value=2.8e+02 Score=27.46 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 839 LRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
|+.+.+.|.++...++.++.++.+++++
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~ 33 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAKK 33 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 472
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.10 E-value=1.9e+02 Score=38.04 Aligned_cols=7 Identities=29% Similarity=0.562 Sum_probs=3.9
Q ss_pred eEEEEEc
Q 002602 90 SFSLIYR 96 (902)
Q Consensus 90 ~FSiiy~ 96 (902)
.|++|+|
T Consensus 24 ~~~~i~G 30 (1164)
T TIGR02169 24 GFTVISG 30 (1164)
T ss_pred CeEEEEC
Confidence 4566664
No 473
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=27.08 E-value=3.4e+02 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCcC
Q 002602 838 VLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQARPG 895 (902)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (902)
..+.|.+.+....+.+...++.++++.++.-+|-..-......||.-|..|.+.|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 4 QYKRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 3444555555666666666666666666666666666666777777777777766543
No 474
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.03 E-value=3.1e+02 Score=26.69 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=32.7
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKN 878 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (902)
+..-|.+-.+....++...+..-+...+..+..+.+|+..++++++-..-|.+|+.+.
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~ 77 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEI 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444445555566666666666666665555555443
No 475
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.97 E-value=4.5e+02 Score=23.35 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 835 EPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
-+.+++..++.++++.+....|+..+-++..+...-+.+..++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444445555544444444444443333
No 476
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.80 E-value=1.9e+02 Score=25.30 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 002602 841 AQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRS 887 (902)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (902)
.|++.+-++.+.++.|.+.....+++.++-|+-+-=--|+.+.||+-
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46677778888899999999999999999888877778888888874
No 477
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.80 E-value=3.4e+02 Score=30.47 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=11.4
Q ss_pred hhhhHhhhhhhhhhHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRA 841 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~ 841 (902)
...+....+.|..|+.+|++
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666555
No 478
>PRK02119 hypothetical protein; Provisional
Probab=26.80 E-value=1.3e+02 Score=26.12 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=17.1
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002602 826 KQTNDNFNQEPDVLRAQLEDLTRKSQFLEVEL 857 (902)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (902)
..+-+.||+.|.+.+.++..|+++++.+-.+|
T Consensus 22 E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 22 ENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655555544444433
No 479
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.70 E-value=3.2e+02 Score=28.54 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=25.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELER 859 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (902)
-++.|++..+-|.....+++|..++++++.+....++.+
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~ 85 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIK 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777888887776555444433
No 480
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.67 E-value=71 Score=28.06 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=10.5
Q ss_pred hhhhHhhhhhhhhhHHHHHHH
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQ 842 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~ 842 (902)
++++.+.|.-|.+|+++|.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAE 22 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 481
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.62 E-value=2.3e+02 Score=24.87 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=19.3
Q ss_pred hhhhhhHHHHHH---HHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 830 DNFNQEPDVLRA---QLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 830 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+.|.+.|..|++ .|++|..|.+.+...|...+.++.+
T Consensus 21 daLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 21 DALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 3334555666666666666555544
No 482
>PRK10698 phage shock protein PspA; Provisional
Probab=26.55 E-value=2.1e+02 Score=30.38 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 832 FNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
|..++...+.++..|+.+.+.++.+|++.+.|- -..+|+..+++
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~--~~L~aR~~~A~ 147 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSETRARQ--QALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344444444455555555555555555544422 23455555543
No 483
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=26.54 E-value=2.3e+02 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Q 002602 838 VLRAQLEDLTRKSQFLEVELERTSRK 863 (902)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (902)
.|+.++.+|++..+.....|.+.++.
T Consensus 47 eLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 47 ELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 484
>PRK00846 hypothetical protein; Provisional
Probab=26.48 E-value=3.6e+02 Score=23.89 Aligned_cols=34 Identities=12% Similarity=0.015 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERT 860 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (902)
.+-+.||+.|.+.+.++..|+++.+.+-.+|+..
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666655555544443
No 485
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=26.46 E-value=1.1e+02 Score=32.95 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=23.1
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 002602 825 SKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI 870 (902)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (902)
+.-.|++++=.| .++.|.++.+.++.+|+++.++++++...
T Consensus 193 ve~lnk~~~l~V-----~td~L~keAe~i~~~lekl~eq~~~~~~~ 233 (244)
T COG1938 193 VEALNKMLGLNV-----DTDKLEKEAEEIEEQLEKLAEQLEKEEER 233 (244)
T ss_pred HHHHHHHhcCcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455544443 24555566666666666666666666554
No 486
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.44 E-value=1.5e+02 Score=28.30 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002602 836 PDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSL 888 (902)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (902)
+++|.+|.+.|+++.+..+.++..+...+.+ .+.++++|+.|
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e-----------~~~~~~~L~~l 42 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAE-----------LETAIETLEDL 42 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
No 487
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=26.44 E-value=3.3e+02 Score=28.90 Aligned_cols=66 Identities=29% Similarity=0.331 Sum_probs=42.1
Q ss_pred CchhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHH-------hHHHHHHHHH-------HHhHHHHHHHHHHHHhhhhHHH
Q 002602 817 NSEVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKS-------QFLEVELERT-------SRKLKETTQIAQEEAEKNKAAQ 882 (902)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 882 (902)
.-+...+++|+++..-+.|+.+++ |++.|++|. -+-+.+||+. .+.|+|.+. .=|--|.+--|
T Consensus 105 ~cK~~r~elK~~~~ar~kEikq~~-~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~--~FEkqKl~DlK 181 (219)
T PF06730_consen 105 ICKHARDELKKFNKARNKEIKQLK-QLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETID--NFEKQKLKDLK 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 456778999999999999998886 566666552 2334444443 444444433 23556667777
Q ss_pred HHH
Q 002602 883 EVI 885 (902)
Q Consensus 883 ~~~ 885 (902)
.|+
T Consensus 182 ~i~ 184 (219)
T PF06730_consen 182 KIF 184 (219)
T ss_pred HHH
Confidence 766
No 488
>PRK00106 hypothetical protein; Provisional
Probab=26.42 E-value=1.5e+02 Score=35.78 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHHHHhcC
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEKNKAAQEVIRSLTAQAR 893 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (902)
+.|.+..+.|.+.-..|..+-+.|.++-+..+..+++..++|++...|-.|||. +.+++.+..+++
T Consensus 118 e~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak-----~~l~~~~~~~~~ 183 (535)
T PRK00106 118 ENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAR-----EIILAETENKLT 183 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHH
No 489
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.38 E-value=1.5e+02 Score=28.07 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
.+.+.|.+.+..|+.+++.|+.+......+++..+.++++
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666655555555555555443
No 490
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.32 E-value=5.2e+02 Score=26.31 Aligned_cols=6 Identities=67% Similarity=1.043 Sum_probs=4.0
Q ss_pred cCCccC
Q 002602 897 ALGIET 902 (902)
Q Consensus 897 ~~~~~~ 902 (902)
.+|||+
T Consensus 196 elGIE~ 201 (201)
T KOG4603|consen 196 ELGIEA 201 (201)
T ss_pred HhCcCC
Confidence 467775
No 491
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.26 E-value=1.1e+02 Score=28.62 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=35.3
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHH
Q 002602 823 EYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKE 866 (902)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (902)
+.|...-..|.+|+.-|+.++.+|-+.-..+..|..++.+++-+
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34444445567788888889999988888999999999999888
No 492
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.25 E-value=4.2e+02 Score=27.94 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002602 836 PDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAE 876 (902)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (902)
+.++.++-+.|+++.+..+.++++..++++.|+.--.|+-|
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA 87 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33444456688899999999999999999999875444444
No 493
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.21 E-value=3.7 Score=46.13 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred cccccccccccCCccccccccccccccc--CCceeecCCCCccccccccCCCCCCCeeechhhhhhhcc
Q 002602 643 GVSIADHSICSGCRNQFNFRRRRHNCYN--CGLVYCKLCSSKKSMKTALAPEINKPYRVCDDCFIKLNT 709 (902)
Q Consensus 643 ~v~~~d~s~C~~C~~~F~~~r~rh~C~~--CG~v~C~~Css~~~~~~~~~p~~~~p~RVC~~C~~~l~~ 709 (902)
|-...+...|..|...|.-.+...+|.+ |+.+||-.|+.- .+|.+. ...|..||.-|+..+..
T Consensus 462 ~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Ka--tvp~l~--~e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 462 WQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKA--TVPSLP--NERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHh--hccccc--ccchHHHHHHHHHHhhh
No 494
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.12 E-value=1.6e+02 Score=37.08 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=35.3
Q ss_pred hhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 002602 821 IFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETT 868 (902)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (902)
...-+.|--+.++.|+..|+.+-+.|.++.++.|..|-.++.+++-|+
T Consensus 397 d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 397 DHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555667788888888888888888888888888888877543
No 495
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.12 E-value=2.6e+02 Score=24.04 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=12.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhH
Q 002602 827 QTNDNFNQEPDVLRAQLEDLTRKSQF 852 (902)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (902)
++-+.|......++.+++++..+...
T Consensus 26 e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 26 ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555544333
No 496
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.02 E-value=2.2e+02 Score=35.99 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHhcC
Q 002602 879 KAAQEVIRSLTAQAR 893 (902)
Q Consensus 879 ~~~~~~~~~~~~~~~ 893 (902)
++.++.+++|..+++
T Consensus 655 ~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 655 KAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHhhhhh
Confidence 444555555555443
No 497
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.94 E-value=1.5e+03 Score=29.00 Aligned_cols=212 Identities=10% Similarity=-0.006 Sum_probs=98.6
Q ss_pred ecCcEEEEEEcCCcEEEEcCCCCCCCC---CCCCCCcceeeeeeeccCCCCccEEEEeec-----CCcceeeeeCCeEEE
Q 002602 355 CGEFHTCAVTLSGDLYTWGDGIHNLGL---LGQVSEISHWIPRKVSGQMEGLQISSICCG-----PWHTAAITSAGKLFT 426 (902)
Q Consensus 355 ~G~~hs~aLT~dG~Vy~WG~n~~~~Gq---LG~g~~~~~~~P~~v~~~l~~~~I~~VscG-----~~hs~aLt~~G~Vy~ 426 (902)
....+.+++|+.|++|..-.. .--. .+.|...... + ...++.+|+.+.+- ....+++|.+|.+.-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~--~IP~~~r~~~G~~i~~l----l-~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKR 616 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY--QIPEASRTAKGKPIVNL----L-PLQPDERITAILSVKEFDDGLYLFFATKNGVVKK 616 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh--hCcCCCcCCCCcCHHHh----c-cCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEE
Confidence 455668889999999998322 1111 1112211111 1 12356677776652 224688899998876
Q ss_pred eccCCCCCCCCCCCCCCccccc-ccccccCeEEEEEec--CceeEEEEeecccccCCcccCCCcEEEecCCCCCCCCCCC
Q 002602 427 FGDGTFGALGHGDRSSTSVPRE-VETLKELKTVMASCG--VWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGD 503 (902)
Q Consensus 427 wG~n~~GQLG~g~~~~~~~P~~-V~~l~~~~i~~VacG--~~hs~aLte~~~~~s~~~~~~~G~ly~WG~n~~GQLG~g~ 503 (902)
.-.+.+-..... ... +..-.+..++.+... ..+.++++ +.|++|..-..+--..|...
T Consensus 617 i~l~~~~~~~r~-------G~~aiklke~D~lv~v~~~~~~d~lll~T------------s~Gr~~r~~v~eIp~~gr~~ 677 (800)
T TIGR01063 617 TSLTEFSNIRSN-------GIIAIKLDDGDELISVRLTSGDDEVMLGS------------KNGKAVRFPEEDVRPMGRAA 677 (800)
T ss_pred EEhHHhhhhccC-------CcccccCCCCCEEEEEEEeCCCCEEEEEE------------CCCcEEEEEhhhcCCcCCCC
Confidence 644333211100 000 000012233333222 23345554 68888887554433333222
Q ss_pred CCCeeeeEEeeecCCCCeEEeec--CccEEEEEecCCcEEEEecCCCCCCCCCCCCCccceeeecCCCCCCEEEEE--ec
Q 002602 504 AEPRVVPLCVKVSDDISFCKVAC--GHSITIALTATGQVFSMGSADYGQLGSPGSTGKFPTRIEGNIKHRYIEDIA--CG 579 (902)
Q Consensus 504 ~~~~~~P~~v~~l~~~~I~~Ia~--G~~htlaLt~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia--~G 579 (902)
.... .+....+..|+.+.. ...+.+++|+.|.+.-.=-.++-....+. .--..+...-.+..++.+. -+
T Consensus 678 ~Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~---kGv~~ikl~~~~d~lv~~~~v~~ 750 (800)
T TIGR01063 678 RGVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG---KGVKSIKITDRNGQVVGAIAVDD 750 (800)
T ss_pred CCee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC---cceEEEEccCCCCeEEEEEEecC
Confidence 1111 122224445555543 23356778888877666433322111100 0000111000112333322 24
Q ss_pred CCEEEEEEcCCcEEEEeCCC
Q 002602 580 SYHIAVVSSKSEVYTWGKGA 599 (902)
Q Consensus 580 ~~hs~aLT~~G~VytWG~n~ 599 (902)
.+..+++|.+|.+..+-.++
T Consensus 751 ~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 751 DDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CCeEEEEecCCeEEEeeHhh
Confidence 45688889999888775543
No 498
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=25.93 E-value=2.6e+02 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=26.8
Q ss_pred hhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 002602 822 FEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQIAQEEAEK 877 (902)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (902)
.+-|.+-.+.+.+++......-+.+++.-++++.+|+..+++.++-+.-|++++.+
T Consensus 27 ~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~ 82 (445)
T PRK13428 27 RRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAER 82 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444443333333333334445555555555555555555543
No 499
>smart00338 BRLZ basic region leucin zipper.
Probab=25.83 E-value=1.3e+02 Score=25.17 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVEL 857 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (902)
+.-++.|...-..|.+|...|+++|..|+.+...+..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=25.80 E-value=4e+02 Score=26.81 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHH------HHHHHhhhhHHHHHHHHHHHhc
Q 002602 819 EVIFEYSKQTNDNFNQEPDVLRAQLEDLTRKSQFLEVELERTSRKLKETTQI------AQEEAEKNKAAQEVIRSLTAQA 892 (902)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 892 (902)
+-+..-+.+..+.+...+..-...-+......+..+.+|++.+.++++.-.- |.-++++.+...++++.|....
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~ 112 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNI 112 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CcCc
Q 002602 893 RPGS 896 (902)
Q Consensus 893 ~~~~ 896 (902)
++|.
T Consensus 113 ~~~~ 116 (155)
T PRK06569 113 EDIN 116 (155)
T ss_pred HHHH
Done!