Query 002602
Match_columns 902
No_of_seqs 564 out of 2988
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 16:50:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002602.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1319-1322//hhsearch_pdb/002602hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 569.0 37.0 373 244-642 11-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 549.9 43.7 359 237-621 18-379 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 545.7 40.8 370 247-642 23-451 (473)
4 1a12_A RCC1, regulator of chro 1.0 1 1 538.3 43.2 368 245-643 19-411 (413)
5 3mvd_K Regulator of chromosome 1.0 1 1 537.6 45.3 372 239-642 28-419 (423)
6 4d9s_A UVB-resistance protein 1.0 1 1 513.9 44.2 349 295-673 15-365 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 487.5 32.7 345 299-672 4-352 (389)
8 3mvd_K Regulator of chromosome 1.0 1 1 471.8 32.9 338 295-672 23-381 (423)
9 3of7_A Regulator of chromosome 1.0 1 1 471.6 27.5 323 298-640 12-394 (473)
10 1a12_A RCC1, regulator of chro 1.0 1 1 459.3 36.6 329 236-592 60-412 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=568.99 Aligned_cols=373 Identities=33% Similarity=0.627 Sum_probs=345.7
Q ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC
Q ss_conf 62375526993999808999973489889842146676676673573235789949999149879999819919999589
Q 002602 244 SCHEDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEG 323 (902)
Q Consensus 244 ~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N 323 (902)
..+.+++++|.||+||.|. +||||.++. .....|++++.+...+|++|+||..|+++|+++|+||+||.|
T Consensus 11 ~~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n 80 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80 (389)
T ss_dssp ----------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCCEEECCCCEEEEEECCC-CCCCCCCCC---------CCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 3226688998699703899-751898968---------664277760134678659998477739999589819998899
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCE--EEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 999878898865336548603899978--999956857999981893999918888997779888842233123314778
Q 002602 324 SGGKLGHGVEADVSYPKLIDALNGSNI--HMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRKVSGQME 401 (902)
Q Consensus 324 ~~GqLG~g~~~~~~~P~~V~~l~~~~I--~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l~ 401 (902)
.+||||++.......|+++..+....+ ++|+||.+|++||+++|+||+||.| .+||||.+.......|..+.. +.
T Consensus 81 ~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~ 157 (389)
T 3kci_A 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LR 157 (389)
T ss_dssp GGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CC
T ss_conf 998889899677337777110157732599987687749999489979997299--898678998756758768436-68
Q ss_pred CCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC--CEEEEEEEECCCCCC
Q ss_conf 960899861687304563288299930699998899999897545301113568099999347--436999950356668
Q 002602 402 GLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGV--WHTAAIVEVAGKTSG 479 (902)
Q Consensus 402 ~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~~~~P~~V~~l~~~~i~~VacG~--~ht~aite~~~~~~~ 479 (902)
+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.++++|+||. .|+++++
T Consensus 158 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~-------- 229 (389)
T 3kci_A 158 GIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT-------- 229 (389)
T ss_dssp TSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE--------
T ss_pred CCEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC--------
T ss_conf 973999971758589994898089948998887689998660455685045898399999768985899990--------
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 76568993898328999878999999803217954259997688413765899990399199995699999899999995
Q 002602 480 SNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTGK 559 (902)
Q Consensus 480 ~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~htvaLt~dG~Vy~wGsn~~GqLG~~~~~~~ 559 (902)
.+|+||+||.|.+||||.++......|+.+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.....
T Consensus 230 ----~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~ 305 (389)
T 3kci_A 230 ----DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHV 305 (389)
T ss_dssp ----TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred ----CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
T ss_conf ----5997999739988877989988854467954668996799947998799995899399985899988889998662
Q ss_pred -CCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCEEE
Q ss_conf -4424305778887899995597799997299399993999997689999983121996043586078871189853015
Q 002602 560 -FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALRDKQVKSVVCGSNFTAAI 638 (902)
Q Consensus 560 -~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~V~~IacG~~hT~ai 638 (902)
.|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|++|+.+.+.+|++|+||.+||+||
T Consensus 306 ~~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al 384 (389)
T 3kci_A 306 RRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAW 384 (389)
T ss_dssp EEEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEE
T ss_pred CCCEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEE
T ss_conf 08758514-79998899994457099998999899803899886889898774676791135899879999667828999
Q ss_pred EECC
Q ss_conf 3024
Q 002602 639 CLHK 642 (902)
Q Consensus 639 ~~~k 642 (902)
+..+
T Consensus 385 ~~~~ 388 (389)
T 3kci_A 385 STSK 388 (389)
T ss_dssp CC--
T ss_pred ECCC
T ss_conf 4699
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=549.94 Aligned_cols=359 Identities=34% Similarity=0.626 Sum_probs=332.5
Q ss_pred CCCCCCCCCE-EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 2002789623-755269939998089999734898898421466766766735732357899499991498799998199
Q 002602 237 VSSSSQGSCH-EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQG 315 (902)
Q Consensus 237 ~s~~s~g~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~dG 315 (902)
+..++.|..| ++++.+|.||+||.|. +||||.+.. .+...|+++..+...+|++|+||..|+++|+++|
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTT
T ss_pred EEEEECCCCEEEEEEECCEEEEEECCC-CCCCCCCCC---------CCCCCCEEECCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 699961879099998299899986999-988897986---------5573887822468997899982845089998889
Q ss_pred -CEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf -1999958999987889886533654860389997899995685799998189399991888899777988884223312
Q 002602 316 -QIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPR 394 (902)
Q Consensus 316 -~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~ 394 (902)
+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++|+||+||.| .+||||.+.......|.
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~ 165 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQ 165 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCCCE
T ss_conf 9899975998868998998764610684146899889999770465897389859990799--87547798987755235
Q ss_pred EECCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEC
Q ss_conf 33147789608998616873045632882999306999988999998975453011135680999993474369999503
Q 002602 395 KVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKTVMASCGVWHTAAIVEVA 474 (902)
Q Consensus 395 ~v~~~l~~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~~~~P~~V~~l~~~~i~~VacG~~ht~aite~~ 474 (902)
++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||.+|+++|+
T Consensus 166 ~v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~--- 241 (406)
T 4d9s_A 166 KIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS--- 241 (406)
T ss_dssp ECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE---
T ss_pred EECC-CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEC---
T ss_conf 7435-689738999647873999947998898417988877889987768627840368962999997898189994---
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 56668765689938983289998789999998032179542599976884137658999903991999956999998999
Q 002602 475 GKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSP 554 (902)
Q Consensus 475 ~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~htvaLt~dG~Vy~wGsn~~GqLG~~ 554 (902)
.+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 242 ---------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 242 ---------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp ---------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred ---------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf ---------89988996389988789998767505678232589988999846787999959990999338998888789
Q ss_pred CCCCC-CCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 99995-44243057788878999955977999972993999939999976899999831219960435
Q 002602 555 GSTGK-FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEALR 621 (902)
Q Consensus 555 ~~~~~-~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~ 621 (902)
..... .|..+. .+....|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 313 ~~~~~~~p~~v~-~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 313 NNLDQCSPVQVR-FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp SSSCEEEEEEEC-CGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCCCCCCEEEE-CCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 987774677973-2679858999928994999948997899659988866899987773887850026
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=545.70 Aligned_cols=370 Identities=25% Similarity=0.419 Sum_probs=317.7
Q ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 75526993999808999973489889842146676676673573235--7899499991498799998199199995899
Q 002602 247 EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLEST--VVLDAQSIACGSKHAVLVTKQGQIFSWGEGS 324 (902)
Q Consensus 247 ~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 324 (902)
+++..+|+||+||.|. .||||.|... ...+...|++++.+ ...+|++|+||..|+++|+++|+||+||.|.
T Consensus 23 ~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~ 95 (473)
T 3of7_A 23 YLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND 95 (473)
T ss_dssp HCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCCCEEEECCCC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCC
T ss_conf 2678876589981898-8736989776------66445576215545557787899970787699991698499968998
Q ss_pred CCCCCCCCCCC-----------------------CCCCEEEEC--C----CCCCEEEEEECCCEEEEEECCCCEEEECCC
Q ss_conf 99878898865-----------------------336548603--8----999789999568579999818939999188
Q 002602 325 GGKLGHGVEAD-----------------------VSYPKLIDA--L----NGSNIHMVACGEFHTCAVTLSGDLYTWGDG 375 (902)
Q Consensus 325 ~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n 375 (902)
+||||++.... ...|.+|.. + .+.+|++|+||.+|++||+++|+||+||.|
T Consensus 96 ~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n 175 (473)
T 3of7_A 96 VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTF 175 (473)
T ss_dssp TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 88899988653333234565556754334446334675013434577545898189998268879999489849994699
Q ss_pred CCCCCCCCCCCC--CCEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf 889977798888--4223312331477896089986168730456328829993069999889999989----7545301
Q 002602 376 IHNLGLLGQVSE--ISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSS----TSVPREV 449 (902)
Q Consensus 376 ~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~----~~~P~~V 449 (902)
.+..||||.+.. .....|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ...|..+
T Consensus 176 ~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~ 254 (473)
T 3of7_A 176 RCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254 (473)
T ss_dssp EETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 6898754888877741447677552-478887999963783899917992999769988888988445433354375212
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC----CEEEEEEEEECCCCCEEEEE
Q ss_conf 11356809999934743699995035666876568993898328999878999999----80321795425999768841
Q 002602 450 ETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAE----PRVVPLCVKVSDDISFCKVA 525 (902)
Q Consensus 450 ~~l~~~~i~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~----~~~~P~~V~~l~~~~V~~Ia 525 (902)
.. .+|++|+||.+|+++|+ .+|+||+||.|.+||||+++.. ....|+.+..+.+.+|++|+
T Consensus 255 ~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 255 GL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp SC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE
T ss_pred CC---CCEEEEECCCCEEEEEE------------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEE
T ss_conf 77---66389954897589991------------6998899378989885888765688445413212556786389998
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCC----------C-----CCCEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 37658999903991999956999998999999----------9-----54424305778887899995597799997299
Q 002602 526 CGHSITIALTATGQVFSMGSADYGQLGSPGST----------G-----KFPTRIEGNIKHRYIEDIACGSYHIAVVSSKS 590 (902)
Q Consensus 526 ~G~~htvaLt~dG~Vy~wGsn~~GqLG~~~~~----------~-----~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G 590 (902)
||.+|+++|+++|+||+||.|.+||||.+... . ..|..+.. ...|++|+||.+|+++|+++|
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G 396 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNG 396 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTS
T ss_pred ECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCEEEEEECCCEEEEEECCC
T ss_conf 67886999938982999878998741888444665310045786026216700478---775379985787699996898
Q ss_pred CEEEEECCCCCCCCCCC-CCCCEEEEEEC--CCCCCCEEEEECCCCCCEEEEECC
Q ss_conf 39999399999768999-99831219960--435860788711898530153024
Q 002602 591 EVYTWGKGANGQLGHGD-NENKQTPTLVE--ALRDKQVKSVVCGSNFTAAICLHK 642 (902)
Q Consensus 591 ~Vy~WG~n~~GQLG~g~-~~~~~~P~~V~--~l~~~~V~~IacG~~hT~ai~~~k 642 (902)
+||+||.|.+||||+|+ .++...|++|+ .+.+++|++|+||..||+++....
T Consensus 397 ~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 397 IAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKL 451 (473)
T ss_dssp CEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEECC
T ss_conf 4899628989888799977656378482256668972899951888599997447
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=538.34 Aligned_cols=368 Identities=27% Similarity=0.445 Sum_probs=318.9
Q ss_pred CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCC
Q ss_conf 23755269939998089999734898898421466766766735732357899499991498799998199199995899
Q 002602 245 CHEDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQIFSWGEGS 324 (902)
Q Consensus 245 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 324 (902)
+.++++.+|.||+||.|. .||||.+... .....|++++. ..+|++|+||..|+++|+++|+||+||.|.
T Consensus 19 h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~ 87 (413)
T 1a12_A 19 HRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCND 87 (413)
T ss_dssp CTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred CCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCC--CCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 204006898689977898-9837989986--------43046567168--898699986777589994799899988999
Q ss_pred CCCCCCCCCC--CCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCE-EEEEEECCCCC
Q ss_conf 9987889886--53365486038999789999568579999818939999188889977798888422-33123314778
Q 002602 325 GGKLGHGVEA--DVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISH-WIPRKVSGQME 401 (902)
Q Consensus 325 ~GqLG~g~~~--~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~~GqLG~g~~~~~-~~P~~v~~~l~ 401 (902)
+||||++... ....|.+|. +. .+|++|+||.+|++||+++|+||+||.+.+.+||||.+..... ..|.++. .
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~-l~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~---~ 162 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVE-LQ-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ---L 162 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECC-CC-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---C
T ss_pred CCCCCCCCCCCCCCCCCEEEC-CC-CCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEC---C
T ss_conf 887798888875345874753-88-758999668873799848994899437768998637678664466787961---8
Q ss_pred CCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCC-----------CCCCCCCCCC-----CCCEEEEEEECCC
Q ss_conf 96089986168730456328829993069999889999989-----------7545301113-----5680999993474
Q 002602 402 GLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSS-----------TSVPREVETL-----KELKTVMASCGVW 465 (902)
Q Consensus 402 ~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~-----------~~~P~~V~~l-----~~~~i~~VacG~~ 465 (902)
..+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|+.|... ...+|++|+||.+
T Consensus 163 ~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~ 242 (413)
T 1a12_A 163 DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 242 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT
T ss_pred CCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCC
T ss_conf 99779998467618998589988983389888668875333455554553224467457631456667854899970788
Q ss_pred EEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCC--CCEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 36999950356668765689938983289998789999998032179542599--9768841376589999039919999
Q 002602 466 HTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDD--ISFCKVACGHSITIALTATGQVFSM 543 (902)
Q Consensus 466 ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~--~~V~~Ia~G~~htvaLt~dG~Vy~w 543 (902)
|+++|+ .+|+||+||.|.+||||+++......|+.+..+.+ .+|++|+||.+|+++|+++|+||+|
T Consensus 243 hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~w 310 (413)
T 1a12_A 243 FTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 310 (413)
T ss_dssp EEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 799996------------89979998499876777999876356677010158873299995052458999079989986
Q ss_pred ECCCCCCCCCCCCC--CCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECC--
Q ss_conf 56999998999999--95442430577888789999559779999729939999399999768999998312199604--
Q 002602 544 GSADYGQLGSPGST--GKFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEA-- 619 (902)
Q Consensus 544 Gsn~~GqLG~~~~~--~~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~-- 619 (902)
|.|.+||||.+... ...|..+... ..|++|+||.+|+++|+++|+||+||.|.+||||+++.++...|++|..
T Consensus 311 G~n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~ 387 (413)
T 1a12_A 311 GRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 387 (413)
T ss_dssp ECCGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred ECCCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 48988866899988636677792266---762599977564799948997899228989878799988755374854556
Q ss_pred CCCCCEEEEECCCCCCEEEEECCC
Q ss_conf 358607887118985301530244
Q 002602 620 LRDKQVKSVVCGSNFTAAICLHKG 643 (902)
Q Consensus 620 l~~~~V~~IacG~~hT~ai~~~k~ 643 (902)
+.+..|++|+||.+||++|+.++.
T Consensus 388 ~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 388 LENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp TTTEEEEEEEECSSEEEEEEEECS
T ss_pred CCCCEEEEEEECCCCEEEEEECCC
T ss_conf 589869999557882899981688
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=537.57 Aligned_cols=372 Identities=24% Similarity=0.362 Sum_probs=322.2
Q ss_pred CCCCCCCE-EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 02789623-75526993999808999973489889842146676676673573235789949999149879999819919
Q 002602 239 SSSQGSCH-EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQGQI 317 (902)
Q Consensus 239 ~~s~g~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~dG~V 317 (902)
.++.|..| ++++.+|.||+||.|. .||||.+... .....|.+++.+ .+|++|+||..|+++|+++|+|
T Consensus 28 ~ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v 96 (423)
T 3mvd_K 28 RIAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDI 96 (423)
T ss_dssp -CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCE
T ss_pred EEECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCC--CCCEEEEECCCEEEEEECCCEE
T ss_conf 8863776533166997199986998-7778999987--------567687675688--9844995078948999579949
Q ss_pred EEEECCCCCCCCCCCCCC--CCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 999589999878898865--336548603899978999956857999981893999918888997779888842233123
Q 002602 318 FSWGEGSGGKLGHGVEAD--VSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEISHWIPRK 395 (902)
Q Consensus 318 y~wG~N~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~ 395 (902)
|+||.|.+||||++...+ ...|.+|... .+|++|+||.+|++||+++|+||+||.+.+.+||||.+.......|.+
T Consensus 97 ~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~ 174 (423)
T 3mvd_K 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID 174 (423)
T ss_dssp EEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 986789985899987678656577597479--978999848682899917996999769889899867477888723469
Q ss_pred ECCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 3147789608998616873045632882999306999988999998-----------97545301113568099999347
Q 002602 396 VSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRS-----------STSVPREVETLKELKTVMASCGV 464 (902)
Q Consensus 396 v~~~l~~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~-----------~~~~P~~V~~l~~~~i~~VacG~ 464 (902)
+ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|..+......+|.+|+||.
T Consensus 175 ~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~ 251 (423)
T 3mvd_K 175 L---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN 251 (423)
T ss_dssp S---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET
T ss_pred E---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 6---6998589995389749999269809996278678547776434454333453335687688406886279999799
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--EEEEEEEEECCCCCEEEEECCCCEEEEEECCCCEEE
Q ss_conf 436999950356668765689938983289998789999998--032179542599976884137658999903991999
Q 002602 465 WHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEP--RVVPLCVKVSDDISFCKVACGHSITIALTATGQVFS 542 (902)
Q Consensus 465 ~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~V~~Ia~G~~htvaLt~dG~Vy~ 542 (902)
+|++++.. .+|.||+||.|.+||||.+.... ...|..+. ..+|++|+||.+|+++|+++|+||+
T Consensus 252 ~~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 252 YCTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp TEEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEE
T ss_pred CEEEEEEC-----------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCEEE
T ss_conf 67999988-----------999499974999876799998874146448707---8874899724676999958993999
Q ss_pred EECCCCCCCCCCCCCCC--CCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECC-
Q ss_conf 95699999899999995--442430577888789999559779999729939999399999768999998312199604-
Q 002602 543 MGSADYGQLGSPGSTGK--FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTPTLVEA- 619 (902)
Q Consensus 543 wGsn~~GqLG~~~~~~~--~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~- 619 (902)
||.|.+||||.+..... .|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 318 wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~ 395 (423)
T 3mvd_K 318 VGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSK 395 (423)
T ss_dssp EECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCST
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 97998888798986665468667214-799-7799976898699995899889979997989879999786057697376
Q ss_pred -CCCCCEEEEECCCCCCEEEEECC
Q ss_conf -35860788711898530153024
Q 002602 620 -LRDKQVKSVVCGSNFTAAICLHK 642 (902)
Q Consensus 620 -l~~~~V~~IacG~~hT~ai~~~k 642 (902)
+.+..|.+|+||.+||++|+...
T Consensus 396 ~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 396 NTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp TTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCEEEEEEECCCCEEEEECCC
T ss_conf 647978999977888289997166
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=513.88 Aligned_cols=349 Identities=32% Similarity=0.608 Sum_probs=320.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCC-CEEEEC
Q ss_conf 8994999914987999981991999958999987889886533654860389997899995685799998189-399991
Q 002602 295 VLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSG-DLYTWG 373 (902)
Q Consensus 295 ~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG-~Vy~WG 373 (902)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|+++..+.+.+|++|+||.+|++||+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88889977798888422331233147789608998616873045632882999306999988999998975453011135
Q 002602 374 DGIHNLGLLGQVSEISHWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLK 453 (902)
Q Consensus 374 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~~~~P~~V~~l~ 453 (902)
.| .+||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--886899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 68099999347436999950356668765689938983289998789999998032179542599976884137658999
Q 002602 454 ELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGHSITIA 533 (902)
Q Consensus 454 ~~~i~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~~htva 533 (902)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|..+..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCCEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEE
T ss_conf 973899964787399994------------79988984179888778899877686278403689629999978981899
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCCC-CCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCE
Q ss_conf 90399199995699999899999995-44243057788878999955977999972993999939999976899999831
Q 002602 534 LTATGQVFSMGSADYGQLGSPGSTGK-FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQ 612 (902)
Q Consensus 534 Lt~dG~Vy~wGsn~~GqLG~~~~~~~-~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~ 612 (902)
|+.+|+||+||.|.+||||.+..... .|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 9489988996389988789998767505678232-589988999846787999959990999338998888789987774
Q ss_pred EEEEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2199604358607887118985301530244222356644677653222234544446776
Q 002602 613 TPTLVEALRDKQVKSVVCGSNFTAAICLHKGVSIADHSICSGCRNQFNFRRRRHNCYNCGL 673 (902)
Q Consensus 613 ~P~~V~~l~~~~V~~IacG~~hT~ai~~~k~v~~~d~~~C~~C~~~Fgf~rkrh~C~~CG~ 673 (902)
.|++|..+.+.+|++|+||.+|++||+.+ ...|.|.+..+.+..-|.
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTER--------------NNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSSS
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEECC--------------CCEEEECCCCCCCCCCCC
T ss_conf 67797326798589999289949999489--------------978996599888668999
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=487.55 Aligned_cols=345 Identities=30% Similarity=0.527 Sum_probs=275.2
Q ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCC
Q ss_conf 99991498799998199199995899998788988653365486038999789999568579999818939999188889
Q 002602 299 QSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVEADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHN 378 (902)
Q Consensus 299 ~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~ 378 (902)
+++..-..++++|+.+|+||+||.|.+||||.+...+...|+++..+...+|++|+||.+|+++|+++|+||+||.| .
T Consensus 4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~ 81 (389)
T 3kci_A 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--A 81 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--G
T ss_pred CCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--C
T ss_conf 44465743226688998699703899751898968664277760134678659998477739999589819998899--9
Q ss_pred CCCCCCCCCCCEEEEEEECCCCC-CCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 97779888842233123314778-96089986168730456328829993069999889999989754530111356809
Q 002602 379 LGLLGQVSEISHWIPRKVSGQME-GLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKELKT 457 (902)
Q Consensus 379 ~GqLG~g~~~~~~~P~~v~~~l~-~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~~~~P~~V~~l~~~~i 457 (902)
.||||.+.......|..+..... ..++++|+||..|+++|+++|+||+||.|.+||||+++......|+.|..+.+.+|
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i 161 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEV 161 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEE
T ss_conf 98889899677337777110157732599987687749999489979997299898678998756758768436689739
Q ss_pred EEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCC--CEEEEEE
Q ss_conf 99993474369999503566687656899389832899987899999980321795425999768841376--5899990
Q 002602 458 VMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDAEPRVVPLCVKVSDDISFCKVACGH--SITIALT 535 (902)
Q Consensus 458 ~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~V~~Ia~G~--~htvaLt 535 (902)
++|+||..|+++|+ .+|+||+||.|.+||||+++......|..+..+.+.+|++|+||. .|+++|+
T Consensus 162 ~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~ 229 (389)
T 3kci_A 162 VDVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT 229 (389)
T ss_dssp EEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCEEEEEE------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC
T ss_conf 99971758589994------------898089948998887689998660455685045898399999768985899990
Q ss_pred CCCCEEEEECCCCCCCCCCCCCC-CCCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 39919999569999989999999-54424305778887899995597799997299399993999997689999983121
Q 002602 536 ATGQVFSMGSADYGQLGSPGSTG-KFPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDNENKQTP 614 (902)
Q Consensus 536 ~dG~Vy~wGsn~~GqLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~~~~~~P 614 (902)
++|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++.+....|
T Consensus 230 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P 308 (389)
T 3kci_A 230 DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRP 308 (389)
T ss_dssp TTTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 59979997399888779899888544679546-68996799947998799995899399985899988889998662087
Q ss_pred EEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9960435860788711898530153024422235664467765322223454444677
Q 002602 615 TLVEALRDKQVKSVVCGSNFTAAICLHKGVSIADHSICSGCRNQFNFRRRRHNCYNCG 672 (902)
Q Consensus 615 ~~V~~l~~~~V~~IacG~~hT~ai~~~k~v~~~d~~~C~~C~~~Fgf~rkrh~C~~CG 672 (902)
++|..+.+.+|++|+||.+|++||+.+ ...|.|....+.+...|
T Consensus 309 ~~v~~l~~~~v~~ia~G~~h~~al~~~--------------G~v~~wG~n~~GqLG~g 352 (389)
T 3kci_A 309 RQVQGLQGKKVIAIATGSLHCVCCTED--------------GEVYTWGDNDEGQLGDG 352 (389)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETT--------------CCEEEEECCTTSTTCSS
T ss_pred EEECCCCCCCEEEEEECCCEEEEECCC--------------CCEEEEECCCCCCCCCC
T ss_conf 585147999889999445709999899--------------98998038998868898
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=471.75 Aligned_cols=338 Identities=22% Similarity=0.354 Sum_probs=290.5
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCCCCCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEC
Q ss_conf 899499991498799998199199995899998788988-6533654860389997899995685799998189399991
Q 002602 295 VLDAQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVE-ADVSYPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWG 373 (902)
Q Consensus 295 ~~~V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG 373 (902)
..++++|+||..|+++++++|+||+||.|.+||||++.. .....|.++..+. .|++|+||..|+++|+.+|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEE
T ss_conf 12036886377653316699719998699877789999875676876756889--8449950789489995799499867
Q ss_pred CCCCCCCCCCCCCCCC--EEEEEEECCCCCCCCEEEEEECCCCCEEEEECCEEEEECC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 8888997779888842--2331233147789608998616873045632882999306--99998899999897545301
Q 002602 374 DGIHNLGLLGQVSEIS--HWIPRKVSGQMEGLQISSICCGPWHTAAITSAGKLFTFGD--GTFGALGHGDRSSTSVPREV 449 (902)
Q Consensus 374 ~n~~~~GqLG~g~~~~--~~~P~~v~~~l~~~~I~~IacG~~Hs~aLt~~G~VytwG~--N~~GqLG~g~~~~~~~P~~V 449 (902)
.| .+||||.+.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|..+
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89--98589998767865657759747---99789998486828999179969997698898998674778887234696
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCC-----------CCEEEEEEEEECCC
Q ss_conf 1135680999993474369999503566687656899389832899987899999-----------98032179542599
Q 002602 450 ETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHGDA-----------EPRVVPLCVKVSDD 518 (902)
Q Consensus 450 ~~l~~~~i~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g~~-----------~~~~~P~~V~~l~~ 518 (902)
+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|..+..+..
T Consensus 176 --~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241 (423)
T ss_dssp --STTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC
T ss_pred --CCCCCEEEEECCCCEEEEEE------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf --69985899953897499992------------6980999627867854777643445433345333568768840688
Q ss_pred CCEEEEECCCCEEEEE-ECCCCEEEEECCCCCCCCCCCCCC-C--CCEEEECCCCCCCEEEEEECCCEEEEEECCCCEEE
Q ss_conf 9768841376589999-039919999569999989999999-5--44243057788878999955977999972993999
Q 002602 519 ISFCKVACGHSITIAL-TATGQVFSMGSADYGQLGSPGSTG-K--FPTRIEGNIKHRYIEDIACGSYHIAVVSSKSEVYT 594 (902)
Q Consensus 519 ~~V~~Ia~G~~htvaL-t~dG~Vy~wGsn~~GqLG~~~~~~-~--~P~~v~~~l~~~~V~~Ia~G~~Ht~vLT~~G~Vy~ 594 (902)
.+|++|+||.+|++++ +.+|.||+||.|.+||||.+.... . .|..+. ...|++|+||.+|+++|+++|+||+
T Consensus 242 ~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCEEEEECCCCEEEEEECCCCEEE
T ss_conf 627999979967999988999499974999876799998874146448707----8874899724676999958993999
Q ss_pred EECCCCCCCCCCCCCC-CEEEEEECCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9399999768999998-31219960435860788711898530153024422235664467765322223454444677
Q 002602 595 WGKGANGQLGHGDNEN-KQTPTLVEALRDKQVKSVVCGSNFTAAICLHKGVSIADHSICSGCRNQFNFRRRRHNCYNCG 672 (902)
Q Consensus 595 WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~V~~IacG~~hT~ai~~~k~v~~~d~~~C~~C~~~Fgf~rkrh~C~~CG 672 (902)
||.|.+||||+++..+ ...|++|+.+.+ .|++|+||.+|++||+.+ ...|.|....+.+...|
T Consensus 318 wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g 381 (423)
T 3mvd_K 318 VGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID--------------GKLYSWGSGVNNQLGVG 381 (423)
T ss_dssp EECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT--------------SCEEEEECCTTSCSSSS
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCC--------------CCEEEECCCCCCCCCCC
T ss_conf 97998888798986665468667214799-779997689869999589--------------98899799979898799
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=471.58 Aligned_cols=323 Identities=25% Similarity=0.395 Sum_probs=170.9
Q ss_pred EEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC---CCCCCCEEEECC--CCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 499991498799998199199995899998788988---653365486038--999789999568579999818939999
Q 002602 298 AQSIACGSKHAVLVTKQGQIFSWGEGSGGKLGHGVE---ADVSYPKLIDAL--NGSNIHMVACGEFHTCAVTLSGDLYTW 372 (902)
Q Consensus 298 V~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~Ia~G~~hs~aLt~dG~Vy~W 372 (902)
|....++..|+++++++|+||+||.|.+||||++.. .+...|.+++.+ ...+|++|+||..|++||+.+|+||+|
T Consensus 12 ~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~w 91 (473)
T 3of7_A 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSW 91 (473)
T ss_dssp CCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEE
T ss_conf 65521342010267887658998189887369897766644557621554555778789997078769999169849996
Q ss_pred CCCCCCCCCCCCCCCCC-----------------------EEEEEEECC--CC---CCCCEEEEEECCCCCEEEEECCEE
Q ss_conf 18888997779888842-----------------------233123314--77---896089986168730456328829
Q 002602 373 GDGIHNLGLLGQVSEIS-----------------------HWIPRKVSG--QM---EGLQISSICCGPWHTAAITSAGKL 424 (902)
Q Consensus 373 G~n~~~~GqLG~g~~~~-----------------------~~~P~~v~~--~l---~~~~I~~IacG~~Hs~aLt~~G~V 424 (902)
|.| .+||||.+.... ...|.+|.. .. .+.+|++|+||.+|+++|+++|+|
T Consensus 92 G~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~v 169 (473)
T 3of7_A 92 GCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEV 169 (473)
T ss_dssp ECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCE
T ss_pred ECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEE
T ss_conf 899--888899988653333234565556754334446334675013434577545898189998268879999489849
Q ss_pred EEECC--CCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 99306--99998899999--897545301113568099999347436999950356668765689938983289998789
Q 002602 425 FTFGD--GTFGALGHGDR--SSTSVPREVETLKELKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLG 500 (902)
Q Consensus 425 ytwG~--N~~GqLG~g~~--~~~~~P~~V~~l~~~~i~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG 500 (902)
|+||. |.+||||++.. .....|..|..+.+.+|++|+||..|+++|+ .+|+||+||.|.+||||
T Consensus 170 y~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG 237 (473)
T 3of7_A 170 YAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD------------EEGMVFAWGNGQQNQLG 237 (473)
T ss_dssp EEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEE------------CCCEEEEEECCCCCCCC
T ss_conf 994699689875488887774144767755247888799996378389991------------79929997699888889
Q ss_pred CCCCCC----EEEEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCC-----CCCEEEECCCCCC
Q ss_conf 999998----0321795425999768841376589999039919999569999989999999-----5442430577888
Q 002602 501 HGDAEP----RVVPLCVKVSDDISFCKVACGHSITIALTATGQVFSMGSADYGQLGSPGSTG-----KFPTRIEGNIKHR 571 (902)
Q Consensus 501 ~g~~~~----~~~P~~V~~l~~~~V~~Ia~G~~htvaLt~dG~Vy~wGsn~~GqLG~~~~~~-----~~P~~v~~~l~~~ 571 (902)
.+.... ...|..+.. .+|++|+||.+|++||+.+|+||+||.|.+||||.+.... ..|..+. .+.+.
T Consensus 238 ~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~-~~~~~ 313 (473)
T 3of7_A 238 RKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA-LPDNV 313 (473)
T ss_dssp SCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC-CCTTC
T ss_pred CCCCCCCCCCCCCCEECCC---CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCC
T ss_conf 8844543335437521277---6638995489758999169988993789898858887656884454132125-56786
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC--------------CCCEEEEEECCCCCCCEEEEECCCCCCEE
Q ss_conf 7899995597799997299399993999997689999--------------98312199604358607887118985301
Q 002602 572 YIEDIACGSYHIAVVSSKSEVYTWGKGANGQLGHGDN--------------ENKQTPTLVEALRDKQVKSVVCGSNFTAA 637 (902)
Q Consensus 572 ~V~~Ia~G~~Ht~vLT~~G~Vy~WG~n~~GQLG~g~~--------------~~~~~P~~V~~l~~~~V~~IacG~~hT~a 637 (902)
.|++|+||.+|+++|+++|+||+||.|.+||||++.. .....|++|+.+. .|++|+||.+|++|
T Consensus 314 ~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~a 391 (473)
T 3of7_A 314 VIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVA 391 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEE
T ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CEEEEEECCCEEEE
T ss_conf 3899986788699993898299987899874188844466531004578602621670047877--53799857876999
Q ss_pred EEE
Q ss_conf 530
Q 002602 638 ICL 640 (902)
Q Consensus 638 i~~ 640 (902)
|+.
T Consensus 392 l~~ 394 (473)
T 3of7_A 392 VAQ 394 (473)
T ss_dssp EET
T ss_pred EEC
T ss_conf 968
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=459.32 Aligned_cols=329 Identities=27% Similarity=0.456 Sum_probs=215.7
Q ss_pred CCCCCCCCCCE-EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECC
Q ss_conf 32002789623-75526993999808999973489889842146676676673573235789949999149879999819
Q 002602 236 AVSSSSQGSCH-EDFDGLGDVFIWGEGLGNGLLGGAVNGVEISSADRRDALLPKVLESTVVLDAQSIACGSKHAVLVTKQ 314 (902)
Q Consensus 236 ~~s~~s~g~~~-~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~hs~~Lt~d 314 (902)
.+..++.|..| ++++.+|+||+||.|. .||||.+... ......|+++.. ..+|++|+||..|+++|+++
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~-~GqLG~~~~~-------~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~ 129 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCND-EGALGRDTSV-------EGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDD 129 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCT-TSTTCSCCCS-------TTGGGSCEECCC--CSCEEEEEECSSEEEEEETT
T ss_pred CEEEEEECCCEEEEECCCCCEEEEECCC-CCCCCCCCCC-------CCCCCCCEEECC--CCCEEEEECCCCEEEEECCC
T ss_conf 8699986777589994799899988999-8877988888-------753458747538--87589996688737998489
Q ss_pred CCEEEEEC--CCCCCCCCCCCCCCC-CCEEEECCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCC---
Q ss_conf 91999958--999987889886533-654860389997899995685799998189399991888899777988884---
Q 002602 315 GQIFSWGE--GSGGKLGHGVEADVS-YPKLIDALNGSNIHMVACGEFHTCAVTLSGDLYTWGDGIHNLGLLGQVSEI--- 388 (902)
Q Consensus 315 G~Vy~wG~--N~~GqLG~g~~~~~~-~P~~V~~l~~~~I~~Ia~G~~hs~aLt~dG~Vy~WG~n~~~~GqLG~g~~~--- 388 (902)
|+||+||. |.+||||++...... .|.+| +...+|++|+||.+|+++|+++|+||+||.| .+||||.+...
T Consensus 130 G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n--~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 130 GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPELFAN 205 (413)
T ss_dssp SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSCGGGTSS
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCCCEEEEEECCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCC
T ss_conf 9489943776899863767866446678796--1899779998467618998589988983389--88866887533345
Q ss_pred --------CEEEEEEECCCC----CCCCEEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf --------223312331477----896089986168730456328829993069999889999989754530111356--
Q 002602 389 --------SHWIPRKVSGQM----EGLQISSICCGPWHTAAITSAGKLFTFGDGTFGALGHGDRSSTSVPREVETLKE-- 454 (902)
Q Consensus 389 --------~~~~P~~v~~~l----~~~~I~~IacG~~Hs~aLt~~G~VytwG~N~~GqLG~g~~~~~~~P~~V~~l~~-- 454 (902)
....|..+.... ...+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..|..+.+
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNST 285 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCC
T ss_conf 55545532244674576314566678548999707887999968997999849987677799987635667701015887
Q ss_pred CEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEECCCCCEEEEECCCCEEEE
Q ss_conf 809999934743699995035666876568993898328999878999-9998032179542599976884137658999
Q 002602 455 LKTVMASCGVWHTAAIVEVAGKTSGSNGLSSKKLFTWGDGAEGQLGHG-DAEPRVVPLCVKVSDDISFCKVACGHSITIA 533 (902)
Q Consensus 455 ~~i~~VacG~~ht~aite~~~~~~~~~~~~~G~Ly~WG~n~~GqLG~g-~~~~~~~P~~V~~l~~~~V~~Ia~G~~htva 533 (902)
.+|++|+||.+|+++|+ .+|+||+||.|.+||||++ +......|+.|..+. +|++|+||.+|++|
T Consensus 286 ~~v~~ia~G~~hs~al~------------~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~a 351 (413)
T 1a12_A 286 KSWVGFSGGQHHTVCMD------------SEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYA 351 (413)
T ss_dssp CCEEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEE
T ss_pred CEEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEE
T ss_conf 32999950524589990------------79989986489888668999886366777922667--62599977564799
Q ss_pred EECCCCEEEEECCCCCCCCCCCCCC-CCCEEEECC-CCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 9039919999569999989999999-544243057-7888789999559779999729939
Q 002602 534 LTATGQVFSMGSADYGQLGSPGSTG-KFPTRIEGN-IKHRYIEDIACGSYHIAVVSSKSEV 592 (902)
Q Consensus 534 Lt~dG~Vy~wGsn~~GqLG~~~~~~-~~P~~v~~~-l~~~~V~~Ia~G~~Ht~vLT~~G~V 592 (902)
|+++|+||+||.|.+||||.+.... ..|.++... +.+..|++|+||.+|+++|+.+|++
T Consensus 352 lt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 352 VTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp EETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred EECCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 9489978992289898787999887553748545565898699995578828999816889
Done!