BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002603
(902 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM
PE=2 SV=1
Length = 3856
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 19/190 (10%)
Query: 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYD-SSDASDYALKVKPRDRLLVAYFDGTFAWCHP 215
D EF VG+ VW K WWPG++ D +DA + + LV++F
Sbjct: 101 DETQEFLVGNLVWVMTKYKKWWPGEVVDFKADAKESFMVRSIGQSHLVSWFAS------- 153
Query: 216 SQLKPFEKNFEDMSRQSSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLAA 275
S+LKPF+++FE + Q + F +A+Q A+ + ++L MTCSC+ DG A
Sbjct: 154 SKLKPFKESFEQVLNQRNDNGFFDALQKAMSLLSNSLKLDMTCSCIA----DGNGIVSAQ 209
Query: 276 NSGVRPG--VLVPEGGIAKLWNYLFGPSECLAELKHVAQVISIDNMLEFTELKCWLSAFY 333
N R +++ E + +L P E + +LK++A+ + +LE T ++ LSAFY
Sbjct: 210 NITTRKNKPLILREFSVDRL-----EPKEFVTQLKNIAKCVLNAGVLESTVMQSQLSAFY 264
Query: 334 RLRGGYQLAL 343
L G Q+ +
Sbjct: 265 TLFGHKQIPM 274
>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1
Length = 546
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHAHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2
Length = 553
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHAHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1
Length = 553
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHAHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2
SV=1
Length = 552
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHAHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3
Length = 553
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHAHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|Q96N64|PWP2A_HUMAN PWWP domain-containing protein 2A OS=Homo sapiens GN=PWWP2A PE=1
SV=2
Length = 755
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 162 FCVGDFVWGKIKSYPWWPGQIYD-SSDASDYALKVKPRDRLLVAYFDG-TFAWCHPSQLK 219
CVGD VW KI +PWWP +I + D L V+ R +++F T ++ SQL
Sbjct: 653 ICVGDIVWAKIYGFPWWPARILTITVSRKDNGLLVRQEAR--ISWFGSPTTSFLALSQLS 710
Query: 220 PFEKNFE 226
PF +NF+
Sbjct: 711 PFLENFQ 717
>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1
Length = 553
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG+I + LK KPR + V +F GT AW QLK
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHEIGR 250
P+ + E+M + + K F AV +AV E R
Sbjct: 62 PYHLHKEEMIKINKGKRFQQAV-DAVEEFLR 91
>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2
SV=1
Length = 534
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 165 GDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLKP 220
GD VWGK+ YP WPG+I + LK KPR + L V +F GT AW QLKP
Sbjct: 9 GDLVWGKLGRYPPWPGKIVNPPK----DLK-KPRGKKCLFVKFF-GTEDHAWIKVEQLKP 62
Query: 221 FEKNFEDMSRQSSSKSFVNAVQNAVHEI 248
+ + E+M + + K F AV +AV E
Sbjct: 63 YHAHKEEMIKANKGKRFQQAV-DAVEEF 89
>sp|Q5XXA7|HDGR2_DANRE Hepatoma-derived growth factor-related protein 2 OS=Danio rerio
GN=hdgfrp2 PE=2 SV=2
Length = 662
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 160 YEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTF--AWCHPSQ 217
+ F GD V+ K+K YP WP +I D +D + VKP + +F GT A+ P
Sbjct: 3 HNFRPGDLVFAKMKGYPHWPARIEDVADGA-----VKPPPNKIPIFFFGTHETAFLAPKD 57
Query: 218 LKPFEKNFEDMSRQSSSKSFVNA---VQNAVH 246
L +EKN E + + K F +QN H
Sbjct: 58 LFAYEKNQERFGKPNKRKGFNEGLWEIQNNPH 89
>sp|Q69Z61|PWP2A_MOUSE PWWP domain-containing protein 2A OS=Mus musculus GN=Pwwp2a PE=2
SV=2
Length = 730
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAW-CHP----- 215
CVGD VW KI +PWWP +I + V +D L+A + +W P
Sbjct: 628 ICVGDIVWAKIYGFPWWPARI--------LTITVSRKDNGLLARQEARISWFASPTTSSL 679
Query: 216 --SQLKPFEKNFE 226
SQL PF +NF+
Sbjct: 680 ALSQLSPFLENFQ 692
>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1
Length = 462
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 11/88 (12%)
Query: 164 VGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDR--LLVAYFDGT--FAWCHPSQLK 219
+GD VWGK+ YP WPG++ S D LK KPR + V +F GT AW QLK
Sbjct: 8 IGDLVWGKLGRYPPWPGKVV--SPPKD--LK-KPRGKKCFFVKFF-GTEDHAWIKVEQLK 61
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQNAVHE 247
P+ + E+M + + K F AV +AV E
Sbjct: 62 PYHPHKEEMIKVNKGKRFQQAV-DAVEE 88
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 138 DGEIREMSDSEKGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKP 197
+G +R S S + +S D F GD VW K++ YPWWP +Y+ + K
Sbjct: 70 NGGLRRASSSAQAVPPSSCD----FSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIRKKGK 125
Query: 198 RDRLLVAYFDG--TFAWCHPSQLKPF 221
R+ V +FD T W LKP+
Sbjct: 126 SVRVHVQFFDDSPTRGWVSKRMLKPY 151
>sp|Q6P4K1|HDGR2_XENTR Hepatoma-derived growth factor-related protein 2 OS=Xenopus
tropicalis GN=hdgfrp2 PE=2 SV=1
Length = 643
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTF--AWCHPSQLK 219
F GD V+ K+K YP WP +I D D + VKP +F GT A+ P L
Sbjct: 5 FKPGDLVFAKMKGYPHWPARIDDVKDGA-----VKPPPNKYPIFFYGTHETAFLAPKDLF 59
Query: 220 PFEKNFEDMSRQSSSKSF 237
P+EK + + + K F
Sbjct: 60 PYEKCKDKYGKPNKRKGF 77
>sp|Q175F8|GLYR1_AEDAE Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti
GN=AAEL006684 PE=3 SV=1
Length = 559
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGT--FAWCHPSQLK 219
+ V D VW K+K + WPG+I + A + VK + +F G+ +AW +Q+K
Sbjct: 7 YAVNDLVWAKMKGFSPWPGRISEPP-AELRRITVKKNIPVRCIFFFGSNNYAWIEETQIK 65
Query: 220 PFEKNFEDMSRQSSSKSFVNAVQ 242
P+++ E + S F AVQ
Sbjct: 66 PYQEFKEKLLSSCKSAGFKEAVQ 88
>sp|Q6IR42|ZCPW1_MOUSE Zinc finger CW-type PWWP domain protein 1 OS=Mus musculus GN=Zcwpw1
PE=2 SV=2
Length = 630
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 135 ENPDGEIREMSDSEKGEEDNSSDGNY-EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYAL 193
+NPD E+ SD Y + G +W K YPWWPG I D +Y L
Sbjct: 278 QNPDPNYNRCDIPEESWAGCESDVAYASYVPGSIIWAKQYGYPWWPGMIEADPDLGEYFL 337
Query: 194 KVKPRDRL----LVAYFDGTF--AWCHPSQLKPFEKNFEDMS 229
D L V +F T AW L KNF+++S
Sbjct: 338 FASHLDSLPSKYHVTFFGETVSRAWIPVRML----KNFQELS 375
>sp|Q9UBC3|DNM3B_HUMAN DNA (cytosine-5)-methyltransferase 3B OS=Homo sapiens GN=DNMT3B
PE=1 SV=1
Length = 853
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 SDSEKGEEDNSSDGNYEFCVGDFVWGKIKSYPWWPGQI 182
+DS G+ DG EF +GD VWGKIK + WWP +
Sbjct: 207 ADSGDGDSSEYQDGK-EFGIGDLVWGKIKGFSWWPAMV 243
>sp|O88509|DNM3B_MOUSE DNA (cytosine-5)-methyltransferase 3B OS=Mus musculus GN=Dnmt3b
PE=1 SV=2
Length = 859
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKP 220
EF +GD VWGKIK + WWP + S + P R + + DG F+ +L
Sbjct: 229 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKR--QAMPGMRWVQWFGDGKFSEISADKLVA 286
Query: 221 ---FEKNFEDMSRQ---SSSKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLA 274
F ++F + S K+ + ++ A G+ T S P ESL+ +P+
Sbjct: 287 LGLFSQHFNLATFNKLVSYRKAMYHTLEKARVRAGK------TFSSSPGESLEDQLKPML 340
Query: 275 --ANSGVRP 281
A+ G +P
Sbjct: 341 EWAHGGFKP 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,067,661
Number of Sequences: 539616
Number of extensions: 15678290
Number of successful extensions: 65704
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 1717
Number of HSP's that attempted gapping in prelim test: 56509
Number of HSP's gapped (non-prelim): 7709
length of query: 902
length of database: 191,569,459
effective HSP length: 127
effective length of query: 775
effective length of database: 123,038,227
effective search space: 95354625925
effective search space used: 95354625925
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)