Query 002603
Match_columns 902
No_of_seqs 178 out of 629
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05835 Dnmt3b_related The PWW 99.9 7.6E-23 1.6E-27 182.8 5.8 83 162-247 1-86 (87)
2 cd05162 PWWP The PWWP domain, 99.9 1.9E-22 4.1E-27 177.9 8.1 85 162-246 1-86 (87)
3 cd05836 N_Pac_NP60 The PWWP do 99.9 2E-22 4.3E-27 180.3 6.8 82 162-246 1-84 (86)
4 cd05834 HDGF_related The PWWP 99.9 4.6E-22 1E-26 177.0 7.4 80 161-246 2-82 (83)
5 cd05838 WHSC1_related The PWWP 99.8 3.3E-21 7.1E-26 175.1 8.0 87 162-248 1-92 (95)
6 PF00855 PWWP: PWWP domain; I 99.8 4.2E-21 9.1E-26 166.8 3.6 82 162-246 1-85 (86)
7 cd05840 SPBC215_ISWI_like The 99.8 1.2E-19 2.5E-24 164.9 7.2 85 162-246 1-92 (93)
8 smart00293 PWWP domain with co 99.7 2.3E-18 4.9E-23 145.4 6.3 61 162-222 1-63 (63)
9 cd05841 BS69_related The PWWP 99.7 3E-18 6.5E-23 153.6 6.3 74 161-245 6-81 (83)
10 cd05837 MSH6_like The PWWP dom 99.7 9.1E-18 2E-22 156.2 8.1 86 161-246 2-101 (110)
11 cd06080 MUM1_like Mutated mela 99.7 7.6E-18 1.6E-22 150.1 5.8 76 162-246 1-78 (80)
12 cd05839 BR140_related The PWWP 99.6 3.7E-15 8E-20 140.1 7.6 87 162-248 1-108 (111)
13 KOG1904 Transcription coactiva 99.4 2.4E-13 5.2E-18 153.5 9.1 86 159-248 10-98 (496)
14 KOG1081 Transcription factor N 96.3 0.0019 4E-08 74.3 2.2 61 161-229 135-196 (463)
15 PF08169 RBB1NT: RBB1NT (NUC16 89.4 0.87 1.9E-05 43.2 5.9 81 163-250 7-90 (96)
16 smart00333 TUDOR Tudor domain. 89.3 0.38 8.2E-06 39.3 3.1 53 161-223 2-55 (57)
17 smart00743 Agenet Tudor-like d 89.0 0.35 7.5E-06 40.5 2.7 51 161-221 2-56 (61)
18 PF15057 DUF4537: Domain of un 84.7 1.3 2.8E-05 43.1 4.4 60 159-223 53-114 (124)
19 cd04508 TUDOR Tudor domains ar 83.7 0.91 2E-05 35.9 2.4 46 165-220 1-48 (48)
20 KOG0955 PHD finger protein BR1 78.0 1.6 3.5E-05 55.3 3.0 62 161-222 942-1025(1051)
21 PF11717 Tudor-knot: RNA bindi 71.1 2.8 6.2E-05 35.2 2.0 51 162-219 1-54 (55)
22 KOG1080 Histone H3 (Lys4) meth 65.6 4.1 9E-05 51.7 2.6 90 159-248 189-292 (1005)
23 COG5475 Uncharacterized small 48.0 32 0.00069 30.4 4.3 51 160-223 3-56 (60)
24 PF05641 Agenet: Agenet domain 37.0 19 0.0004 31.4 1.3 52 162-223 1-65 (68)
25 cd04370 BAH BAH, or Bromo Adja 36.6 33 0.00071 31.2 2.9 41 160-206 2-46 (123)
26 PF11302 DUF3104: Protein of u 32.4 60 0.0013 30.1 3.8 57 161-220 5-69 (75)
27 PF09465 LBR_tudor: Lamin-B re 23.2 1.2E+02 0.0025 26.8 3.7 50 160-218 4-54 (55)
28 PRK13183 psbN photosystem II r 21.8 41 0.00089 28.6 0.8 13 855-867 23-35 (46)
29 KOG3038 Histone acetyltransfer 21.7 1.2E+02 0.0027 33.7 4.5 51 158-216 195-248 (264)
No 1
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.87 E-value=7.6e-23 Score=182.80 Aligned_cols=83 Identities=33% Similarity=0.673 Sum_probs=72.6
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhh--hcccChHHHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDM--SRQSSSKSFV 238 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~--sKqsKsk~F~ 238 (902)
|.+||||||||+|||||||+|+++...... ....+.++|+|| +++|+||.+.+|+||.++++.+ .+.++...|+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~---~~~~~~~~V~fFGs~~~a~v~~~~l~pf~e~~~~f~~~~~~k~~~f~ 77 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKR---PPVVGMRWVTWFGSGTFSEVSVDKLSPFSEFFKAFSRYNRKKKGLYK 77 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccc---cCCCCeEEEEEeCCCCEeEECHHHCcChhHhHHHHhhhhhhhhHHHH
Confidence 789999999999999999999999876432 335678999999 9999999999999999999885 3556789999
Q ss_pred HHHHHHHHH
Q 002603 239 NAVQNAVHE 247 (902)
Q Consensus 239 eAVeEALeE 247 (902)
+||.+|+++
T Consensus 78 ~Ai~eA~e~ 86 (87)
T cd05835 78 KAIYEALEV 86 (87)
T ss_pred HHHHHHHHc
Confidence 999999985
No 2
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=99.87 E-value=1.9e-22 Score=177.86 Aligned_cols=85 Identities=41% Similarity=0.806 Sum_probs=77.7
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcccChHHHHHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVNA 240 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKqsKsk~F~eA 240 (902)
|.+|||||||++|||||||+|+++...+..+......++++|+|| +++|+||.+++|.||..++....++++.+.|++|
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~~~~~~k~~~f~~A 80 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKESEAKQSKRKGFKKA 80 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchHHhhccCCccHHHHHH
Confidence 789999999999999999999999998776655556678999999 9999999999999999999887788899999999
Q ss_pred HHHHHH
Q 002603 241 VQNAVH 246 (902)
Q Consensus 241 VeEALe 246 (902)
|++|++
T Consensus 81 ~~eA~~ 86 (87)
T cd05162 81 YDEALE 86 (87)
T ss_pred HHHHHh
Confidence 999986
No 3
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=2e-22 Score=180.28 Aligned_cols=82 Identities=28% Similarity=0.636 Sum_probs=71.6
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcC-CCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcccChHHHHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVK-PRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVN 239 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~k-kkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKqsKsk~F~e 239 (902)
|.+||||||||+|||||||+|+++..... ..+ ..++++|+|| +++|+||.+.+|+||.++++.+.++++.+.|++
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~---~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF~~~~~~~~~~~k~~~F~~ 77 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLK---KPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHKEEMIKLNKGARFQQ 77 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcc---cccCCCCeEEEEEeCCCCEEEECHHhCeechhhHHHHhcccchHHHHH
Confidence 78999999999999999999999865422 222 2478999999 999999999999999999999998899999999
Q ss_pred HHHHHHH
Q 002603 240 AVQNAVH 246 (902)
Q Consensus 240 AVeEALe 246 (902)
||+++.+
T Consensus 78 Av~~ie~ 84 (86)
T cd05836 78 AVDAIEE 84 (86)
T ss_pred HHHHHHH
Confidence 9997754
No 4
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.86 E-value=4.6e-22 Score=177.01 Aligned_cols=80 Identities=29% Similarity=0.576 Sum_probs=72.8
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcccChHHHHH
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVN 239 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKqsKsk~F~e 239 (902)
.|.+|||||||++|||||||+|+++.+. ....+.|+|+|| +++++||.+.+|.||.+++..+.++++.+.|++
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~------~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~~~~~~~~k~k~F~~ 75 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDW------KPPGKKYPVYFFGTHETAFLKPEDLFPYTENKKKFGKPKKRKGFNE 75 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEeccccc------CCCCCEEEEEEeCCCCEeEECHHHceecccchhhhccccchHHHHH
Confidence 6999999999999999999999999875 224578999999 999999999999999999999988899999999
Q ss_pred HHHHHHH
Q 002603 240 AVQNAVH 246 (902)
Q Consensus 240 AVeEALe 246 (902)
||+|+.+
T Consensus 76 Av~eie~ 82 (83)
T cd05834 76 AVWEIEK 82 (83)
T ss_pred HHHHHhh
Confidence 9998754
No 5
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.84 E-value=3.3e-21 Score=175.13 Aligned_cols=87 Identities=23% Similarity=0.518 Sum_probs=71.7
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhh-cCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcc---cChHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALK-VKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQ---SSSKS 236 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK-~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKq---sKsk~ 236 (902)
+.+|||||||++|||||||+|+++...+.+... ....+.++|+|| +++|+|+.+.+|+||.+++..+..+ ++.+.
T Consensus 1 ~~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf~e~~~~~~~~~~~~~~~~ 80 (95)
T cd05838 1 PLYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPYQEGDKGFKEQTKSYLAKR 80 (95)
T ss_pred CCcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCEEEeccccccchhhhhhhhhhhhhhhhHHH
Confidence 468999999999999999999999877664322 224478999999 9999999999999999987765433 35789
Q ss_pred HHHHHHHHHHHH
Q 002603 237 FVNAVQNAVHEI 248 (902)
Q Consensus 237 F~eAVeEALeEa 248 (902)
|++||+||.+.+
T Consensus 81 f~~AleEA~~~~ 92 (95)
T cd05838 81 FRKALEEASLAF 92 (95)
T ss_pred HHHHHHHHHHHh
Confidence 999999997754
No 6
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=99.82 E-value=4.2e-21 Score=166.75 Aligned_cols=82 Identities=39% Similarity=0.895 Sum_probs=69.5
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcc--cChHHHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQ--SSSKSFV 238 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKq--sKsk~F~ 238 (902)
|.+|||||||++|||||||+|+++..... .....+.++|+|| +++|+||++++|.||.++.+.+... ++.+.|+
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~---~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~~~~~~~~~~~~k~~~~~ 77 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSK---KKRKDGHVLVRFFGDNDYAWVKPSNIKPFSEFKEKLKKKKKKKRKSFR 77 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTS---CSSSSTEEEEEETTTTEEEEEEGGGEEECCHHHHHHHHHHHHHSHHHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccc---cCCCCCEEEEEecCCCCEEEECHHHhhChhhhHHHHHHhhccchHHHH
Confidence 78999999999999999999999986543 2345678999999 9999999999999999777666543 5678999
Q ss_pred HHHHHHHH
Q 002603 239 NAVQNAVH 246 (902)
Q Consensus 239 eAVeEALe 246 (902)
.||++|++
T Consensus 78 ~Ai~eA~~ 85 (86)
T PF00855_consen 78 KAIEEAEE 85 (86)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999976
No 7
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.79 E-value=1.2e-19 Score=164.86 Aligned_cols=85 Identities=28% Similarity=0.555 Sum_probs=69.6
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhh---cCCCCcEEEEEe-eCCeeeecCCCcccCch-hhhhhhc--ccCh
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALK---VKPRDRLLVAYF-DGTFAWCHPSQLKPFEK-NFEDMSR--QSSS 234 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK---~kkkg~~LVaFF-D~tfAWV~psqLkPF~e-nFee~sK--qsKs 234 (902)
|.+||||||||+|||||||+|+++...+..+++ .+..+.|+|+|| +++|+|+.+.+|+||.+ ....+.. ..++
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~~~~~~~~l~~~~~k~ 80 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLTEEKIAKFLKKPKRKD 80 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCCHHHHHHHhhcCCCCC
Confidence 789999999999999999999999888776652 234578999999 99999999999999995 3444443 3467
Q ss_pred HHHHHHHHHHHH
Q 002603 235 KSFVNAVQNAVH 246 (902)
Q Consensus 235 k~F~eAVeEALe 246 (902)
+.+..|.+.|++
T Consensus 81 k~l~~ay~~A~~ 92 (93)
T cd05840 81 KELIKAYKAAKD 92 (93)
T ss_pred HHHHHHHHHhcC
Confidence 788888887753
No 8
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=99.74 E-value=2.3e-18 Score=145.43 Aligned_cols=61 Identities=34% Similarity=0.773 Sum_probs=53.9
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhh-cCCCCcEEEEEe-eCCeeeecCCCcccCc
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALK-VKPRDRLLVAYF-DGTFAWCHPSQLKPFE 222 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK-~kkkg~~LVaFF-D~tfAWV~psqLkPF~ 222 (902)
|.+|||||||++|||||||+|+++...+..+++ .+..+.|+|+|| +++|+|+.+.+|+||.
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceeeCC
Confidence 689999999999999999999999987765543 345678999999 9999999999999984
No 9
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.73 E-value=3e-18 Score=153.61 Aligned_cols=74 Identities=22% Similarity=0.548 Sum_probs=67.3
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe--eCCeeeecCCCcccCchhhhhhhcccChHHHH
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF--DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFV 238 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF--D~tfAWV~psqLkPF~enFee~sKqsKsk~F~ 238 (902)
.+.+|||||||++|||||||+|+.+.+ +.|.|+|| ++++|||.+.+|+||..++.++.+.++.+.|+
T Consensus 6 c~~p~dLVwAK~kGyp~WPAkV~~~~~-----------~~~~V~FFG~t~~~a~v~~~~i~~~~~~~~~~~~~~k~~~f~ 74 (83)
T cd05841 6 CRPPHELVWAKLKGFPYWPAKVMRVED-----------NQVDVRFFGGQHDRAWIPSNNIQPISTEIPQQLVKKRSRGFN 74 (83)
T ss_pred cCCCCCEEEEeCCCCCCCCEEEeecCC-----------CeEEEEEcCCCCCeEEEehHHeeehhhhhhhhccccccHHHH
Confidence 578999999999999999999998754 47999999 89999999999999999998888888899999
Q ss_pred HHHHHHH
Q 002603 239 NAVQNAV 245 (902)
Q Consensus 239 eAVeEAL 245 (902)
+||+||.
T Consensus 75 ~A~~Eie 81 (83)
T cd05841 75 KAMDELE 81 (83)
T ss_pred HHHHHHH
Confidence 9999874
No 10
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=99.72 E-value=9.1e-18 Score=156.18 Aligned_cols=86 Identities=27% Similarity=0.577 Sum_probs=64.0
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhh---hhcCCCCcEEEEEe-e-CCeeeecCCCcccCchhhhh--------
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYA---LKVKPRDRLLVAYF-D-GTFAWCHPSQLKPFEKNFED-------- 227 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~a---lK~kkkg~~LVaFF-D-~tfAWV~psqLkPF~enFee-------- 227 (902)
.|.+|||||||++|||||||+|++.+..+..+ ...+..+.|+|+|| + ++|+||.+++|.||...-+.
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~~~~~~~~~~~~~ 81 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKGSKQFESEKGEKF 81 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCCchhhhhhhhhhh
Confidence 69999999999999999999999876655433 22334568999999 6 59999999999999875321
Q ss_pred -hhcccChHHHHHHHHHHHH
Q 002603 228 -MSRQSSSKSFVNAVQNAVH 246 (902)
Q Consensus 228 -~sKqsKsk~F~eAVeEALe 246 (902)
..+++..+.++.|..+++.
T Consensus 82 ~~~K~~~~~~~~~a~~~~~~ 101 (110)
T cd05837 82 KVRKPNIKKARQKADIAIMQ 101 (110)
T ss_pred hccCCcchhHHHHHHHHHHH
Confidence 1133345566666665554
No 11
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=99.71 E-value=7.6e-18 Score=150.10 Aligned_cols=76 Identities=26% Similarity=0.521 Sum_probs=66.7
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eC-CeeeecCCCcccCchhhhhhhcccChHHHHH
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DG-TFAWCHPSQLKPFEKNFEDMSRQSSSKSFVN 239 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~-tfAWV~psqLkPF~enFee~sKqsKsk~F~e 239 (902)
|.+|||||||++|||||||+|.++... .+.|+|.|| ++ +++|+..++|+||.++|+.+.++...+..++
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~---------~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke 71 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRK---------KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKE 71 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCC---------CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHH
Confidence 689999999999999999999988653 457999999 98 9999999999999999999988877777777
Q ss_pred HHHHHHH
Q 002603 240 AVQNAVH 246 (902)
Q Consensus 240 AVeEALe 246 (902)
++++|.+
T Consensus 72 ~~~~ai~ 78 (80)
T cd06080 72 SYEQAIQ 78 (80)
T ss_pred HHHHHhc
Confidence 7777653
No 12
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=99.57 E-value=3.7e-15 Score=140.09 Aligned_cols=87 Identities=24% Similarity=0.445 Sum_probs=60.3
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcch---------hh-------hhcCCCCcEEEEEe-e-CCeeeecCCCcccCch
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASD---------YA-------LKVKPRDRLLVAYF-D-GTFAWCHPSQLKPFEK 223 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~---------~a-------lK~kkkg~~LVaFF-D-~tfAWV~psqLkPF~e 223 (902)
+.+|||||||++|||||||.|+++..... .+ ........++|.|| + .+|+|+++..|.||..
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~~Wv~~~~l~pl~~ 80 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTWQWLPGDKLEPLGV 80 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcceecCHHHCccccc
Confidence 46899999999999999999999874221 01 11224457999999 5 7999999999999986
Q ss_pred h--hhh-hhcccChHHHHHHHHHHHHHH
Q 002603 224 N--FED-MSRQSSSKSFVNAVQNAVHEI 248 (902)
Q Consensus 224 n--Fee-~sKqsKsk~F~eAVeEALeEa 248 (902)
. ++. +....+....++||+.|.+.+
T Consensus 81 ~~~~D~~kl~~~rk~~~rk~~~~Ay~~A 108 (111)
T cd05839 81 DETLDKLKLKEGRKPSIRKAVQKAYDDA 108 (111)
T ss_pred chhhhhhhhhhccCHHHHHHHHHHHHHH
Confidence 4 222 122333444555555555543
No 13
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=99.43 E-value=2.4e-13 Score=153.46 Aligned_cols=86 Identities=31% Similarity=0.622 Sum_probs=75.4
Q ss_pred CCCcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcccCh--H
Q 002603 159 NYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSS--K 235 (902)
Q Consensus 159 g~kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKqsKs--k 235 (902)
.+.|.+||||||||+|||.|||+|.++.+. +.++ ...+|.|+|| ++.+||+.+.+|+||..+...+.+.++. +
T Consensus 10 ~~~~~~GDLV~AKlkgyp~WParI~~~~~~---~~kp-~pkky~V~FfGT~e~Afl~p~dlqpy~~~k~~~g~~~k~~~k 85 (496)
T KOG1904|consen 10 AGNFKCGDLVFAKLKGYPPWPARIRNGPDG---AVKP-PPKKYTVFFFGTKETAFLKPKDLQPYMLNKEKLGKPNKRVWK 85 (496)
T ss_pred cCCCCCCceeeecccCCCCCcccccCcccc---cccC-CCceeEEEEeccCcccccchhhccchhhhhhhcccchhhhhH
Confidence 457999999999999999999999999886 2333 5568999999 9999999999999999999998877777 9
Q ss_pred HHHHHHHHHHHHH
Q 002603 236 SFVNAVQNAVHEI 248 (902)
Q Consensus 236 ~F~eAVeEALeEa 248 (902)
.|.+||+++-+.+
T Consensus 86 ~F~~av~eI~~a~ 98 (496)
T KOG1904|consen 86 GFIEAVEEIREAF 98 (496)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999776655
No 14
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=96.31 E-value=0.0019 Score=74.26 Aligned_cols=61 Identities=31% Similarity=0.715 Sum_probs=48.6
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhh
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMS 229 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~s 229 (902)
.+.+||+||-++..|+|||+.|+.+...+ +.... .+|+|| . ++|.....+.+|...+..+.
T Consensus 135 ~~~~~~~vw~~vg~~~~~~c~vc~~~~~~---~~~~~---~~~~f~~~--~~~~~~~~~~~~~g~~~~~l 196 (463)
T KOG1081|consen 135 KREVGDLVWSKVGEYPWWPCMVCHDPLLP---KGMKH---DHVNFFGC--YAWTHEKRVFPYEGQSSKLI 196 (463)
T ss_pred cccceeEEeEEcCcccccccceecCcccc---hhhcc---ccceeccc--hhhHHHhhhhhccchHHHhh
Confidence 78999999999999999999999887765 11111 189999 7 99999999999954454443
No 15
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=89.44 E-value=0.87 Score=43.23 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=45.0
Q ss_pred ccCcEEEEecC--CCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCchhhhhhhcccChHHHHH
Q 002603 163 CVGDFVWGKIK--SYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFVN 239 (902)
Q Consensus 163 ~VGDLVWAKVK--GYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~enFee~sKqsKsk~F~e 239 (902)
.+|-+|-+... .-.|.||.|+.|+-.-. + . -++.+++|+=| |..|.-|...+|..|..+-... .......
T Consensus 7 llGkVV~V~~~~~k~~W~PALVVsPsc~dd-v-~-VkKD~~lVRSFkD~KfysV~rkd~~e~~~~~~~k----~e~s~k~ 79 (96)
T PF08169_consen 7 LLGKVVCVESTKKKTSWFPALVVSPSCNDD-V-T-VKKDQCLVRSFKDGKFYSVARKDVREFDIDSLPK----SESSLKP 79 (96)
T ss_dssp STTSEEEEE-SS-SS-EEEEEEE--SS-SS-------TT-EEEEESSS--EEEE-TTTEE---STTS-H----HHHHH-H
T ss_pred hcCcEEEEEcCCCCCceeeEEEEcCCccce-e-e-eccceEEEEEeccCceEEEEhhhhhhcccccCCc----ccchhhH
Confidence 37888888653 45799999999865432 2 1 23568999999 9999999999999988642211 1124567
Q ss_pred HHHHHHHHHHH
Q 002603 240 AVQNAVHEIGR 250 (902)
Q Consensus 240 AVeEALeEasR 250 (902)
||+.|+.-+..
T Consensus 80 al~~A~~Fl~~ 90 (96)
T PF08169_consen 80 ALDKASTFLKT 90 (96)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 78877765543
No 16
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=89.29 E-value=0.38 Score=39.29 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=43.8
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCcccCch
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEK 223 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkPF~e 223 (902)
.|.+|++|-|+...--|++|+|...... +.+.|.|. .+...|++..+|++...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~----------~~~~V~f~D~G~~~~v~~~~l~~l~~ 55 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE----------QLYEVFFIDYGNEEVVPPSDLRPLPE 55 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC----------CEEEEEEECCCccEEEeHHHeecCCC
Confidence 5789999999995557999999987542 46888888 69999999999988654
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=88.96 E-value=0.35 Score=40.50 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=34.6
Q ss_pred CcccCcEEEEecC-CCCCCCceecCCCCcchhhhhcCCCCcEEEEEee--C-CeeeecCCCcccC
Q 002603 161 EFCVGDFVWGKIK-SYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFD--G-TFAWCHPSQLKPF 221 (902)
Q Consensus 161 kF~VGDLVWAKVK-GYPWWPArVidpsdas~~alK~kkkg~~LVaFFD--~-tfAWV~psqLkPF 221 (902)
.|.+||+|-|... ...||||.|..... .+.|.|.|.+ . ..--++.++|+|-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~----------~~~~~V~~~~~~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG----------DGKYLVRYLTESEPLKETVDWSDLRPH 56 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC----------CCEEEEEECCCCcccEEEEeHHHcccC
Confidence 5899999999983 46799999997644 2457777764 2 2333445555553
No 18
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=84.73 E-value=1.3 Score=43.14 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCcccCcEEEEecC--CCCCCCceecCCCCcchhhhhcCCCCcEEEEEeeCCeeeecCCCcccCch
Q 002603 159 NYEFCVGDFVWGKIK--SYPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQLKPFEK 223 (902)
Q Consensus 159 g~kF~VGDLVWAKVK--GYPWWPArVidpsdas~~alK~kkkg~~LVaFFD~tfAWV~psqLkPF~e 223 (902)
.+.+.+||-|.|+.. ++.|=||.|+.-.+.. ......+.|.||++..++|+...+.....
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~-----~~~~~~~~V~f~ng~~~~vp~~~~~~I~~ 114 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERR-----ASEDKEYTVRFYNGKTAKVPRGEVIWISP 114 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECcccc-----ccCCceEEEEEECCCCCccchhhEEECCH
Confidence 668999999999974 7889999999755432 12345799999988888888887766554
No 19
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=83.75 E-value=0.91 Score=35.91 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=36.6
Q ss_pred CcEEEEecCC-CCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCccc
Q 002603 165 GDFVWGKIKS-YPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKP 220 (902)
Q Consensus 165 GDLVWAKVKG-YPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkP 220 (902)
|++|.|+... -.|.||+|..... .+.+.|.|. -+....++..+|+|
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~----------~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS----------DGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC----------CCcEEEEEEcCCCcEEEeHHHcCC
Confidence 7899999885 7899999998753 246888888 58888888877764
No 20
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=77.97 E-value=1.6 Score=55.31 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=44.5
Q ss_pred CcccCcEEEEecCCCCCCCceecCCCCcchhh-------------h------hc-CCCCcEEEEEe--eCCeeeecCCCc
Q 002603 161 EFCVGDFVWGKIKSYPWWPGQIYDSSDASDYA-------------L------KV-KPRDRLLVAYF--DGTFAWCHPSQL 218 (902)
Q Consensus 161 kF~VGDLVWAKVKGYPWWPArVidpsdas~~a-------------l------K~-kkkg~~LVaFF--D~tfAWV~psqL 218 (902)
.+..=++||||++||||.|++|++|....... + .. ..+.-++|.|| .....|++.+.+
T Consensus 942 ~l~~~~~~~akc~g~~s~~~l~l~p~~~~~~~~~~g~~~~p~~dv~~l~eq~~~~~~~~l~~~L~~~n~~~~~~~~~s~~ 1021 (1051)
T KOG0955|consen 942 KLEELKLVWAKCRGYPSYPALILDPKMPREGNFHNGPDPAPPTDVLALPEQRTNKAPETLFLVLFFDNKRCWQWLPRSKV 1021 (1051)
T ss_pred ceeehhceeehhcCCccchhhhcccccccccCccCCCCCCCCcccccchHHHhcccChhheEEEeecccccccccCCCCc
Confidence 37777899999999999999999998743210 0 01 11224789999 567889999887
Q ss_pred ccCc
Q 002603 219 KPFE 222 (902)
Q Consensus 219 kPF~ 222 (902)
.+..
T Consensus 1022 ~~l~ 1025 (1051)
T KOG0955|consen 1022 LELG 1025 (1051)
T ss_pred cccc
Confidence 6644
No 21
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=71.08 E-value=2.8 Score=35.23 Aligned_cols=51 Identities=25% Similarity=0.454 Sum_probs=37.8
Q ss_pred cccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe--e-CCeeeecCCCcc
Q 002603 162 FCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF--D-GTFAWCHPSQLK 219 (902)
Q Consensus 162 F~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF--D-~tfAWV~psqLk 219 (902)
|.+|+.||++...-.|.||.|++..... ....|.|.|. + .--.||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~-------~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKN-------GEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECT-------TCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecC-------CCEEEEEEcCCCCCCceeeecHHHcc
Confidence 6799999999977789999999876531 2247999999 3 345699998874
No 22
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=65.57 E-value=4.1 Score=51.66 Aligned_cols=90 Identities=28% Similarity=0.482 Sum_probs=61.3
Q ss_pred CCCcccCcEEEEec-CCCCCCCceecCCCC-cchhhhhcCCCCcEEEEEe--e-----CCeeeecCCCcccCchhhhhhh
Q 002603 159 NYEFCVGDFVWGKI-KSYPWWPGQIYDSSD-ASDYALKVKPRDRLLVAYF--D-----GTFAWCHPSQLKPFEKNFEDMS 229 (902)
Q Consensus 159 g~kF~VGDLVWAKV-KGYPWWPArVidpsd-as~~alK~kkkg~~LVaFF--D-----~tfAWV~psqLkPF~enFee~s 229 (902)
...|..|++||++. ++.+.|||.++++.. +...++.........|.|| + ..++|+....+.+|........
T Consensus 189 ~~~~~~e~~~~~~~~~~~~~~~a~~~d~~~~~~~~v~as~~~~~~~~~~~~~s~~~~~~~~~~~r~~m~~~~~~~~~~~~ 268 (1005)
T KOG1080|consen 189 PEEFTVGDLVWAKSGRNEPPWPAIVIDPIRQAPRGVLASCLPVAACVMFFGNSGVPTERDYAWVRRGMERPFSRPVRPFQ 268 (1005)
T ss_pred CcccccchhhhcccccCCcccccceeehhhcchhhhhccCcchhhhheeeeccCCccccchhhhhhccccccchhhhhcc
Confidence 34689999999996 567766666666554 4445555544555778888 3 2588999999999876544333
Q ss_pred cc-----cChHHHHHHHHHHHHHH
Q 002603 230 RQ-----SSSKSFVNAVQNAVHEI 248 (902)
Q Consensus 230 Kq-----sKsk~F~eAVeEALeEa 248 (902)
++ .+...|..++.+|.+..
T Consensus 269 ~~~~~~~~~~~~~e~~~~~~~~~e 292 (1005)
T KOG1080|consen 269 DQTELKREKARSFEQALEEAGLAE 292 (1005)
T ss_pred ccccccccCccchhHHHHHhhccc
Confidence 22 24567888888776543
No 23
>COG5475 Uncharacterized small protein [Function unknown]
Probab=47.97 E-value=32 Score=30.45 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCcccCcEEEEecCCCCCCCceecCCCCcchhhhhcCCCCcEEEEEe---eCCeeeecCCCcccCch
Q 002603 160 YEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF---DGTFAWCHPSQLKPFEK 223 (902)
Q Consensus 160 ~kF~VGDLVWAKVKGYPWWPArVidpsdas~~alK~kkkg~~LVaFF---D~tfAWV~psqLkPF~e 223 (902)
-.|.+||+|=.|-.| |..++..-. ..+.|...|| ....+=+++.+|.|+..
T Consensus 3 ~~FstgdvV~lKsGG----P~Mtvs~~s---------s~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~a 56 (60)
T COG5475 3 MSFSTGDVVTLKSGG----PRMTVSGYS---------SDGMYECRWFDGYGVKREAFHEDELVPGEA 56 (60)
T ss_pred ceeecCcEEEeecCC----ceEEEeccc---------cCCeEEEEEecCCCcccccccccceecccc
Confidence 369999999999888 778776533 2378999999 56788889999999875
No 24
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=36.97 E-value=19 Score=31.44 Aligned_cols=52 Identities=23% Similarity=0.514 Sum_probs=32.0
Q ss_pred cccCcEEEEec--CCC--CCCCceecCCCCcchhhhhcCCCCcEEEEEe--e-C------CeeeecCCCcccCch
Q 002603 162 FCVGDFVWGKI--KSY--PWWPGQIYDSSDASDYALKVKPRDRLLVAYF--D-G------TFAWCHPSQLKPFEK 223 (902)
Q Consensus 162 F~VGDLVWAKV--KGY--PWWPArVidpsdas~~alK~kkkg~~LVaFF--D-~------tfAWV~psqLkPF~e 223 (902)
|.+|+.|=+.. .|| .||||.|+..... ..|+|.|- . . -.-||...+|+|-..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~----------~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP 65 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGD----------DKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPP 65 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-----------EEEEEETT-SS--------EEEEEGGGEEE---
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCC----------cEEEEEECCcccccccccccEEEechheEECcCc
Confidence 66788776664 343 7999999986442 27999995 2 1 256888888887543
No 25
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=36.65 E-value=33 Score=31.18 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCcccCcEEEEecCC----CCCCCceecCCCCcchhhhhcCCCCcEEEEEe
Q 002603 160 YEFCVGDFVWGKIKS----YPWWPGQIYDSSDASDYALKVKPRDRLLVAYF 206 (902)
Q Consensus 160 ~kF~VGDLVWAKVKG----YPWWPArVidpsdas~~alK~kkkg~~LVaFF 206 (902)
..|.+||.|..+-.. -|.|.|+|........ ....+.|+||
T Consensus 2 ~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~------~~~~~~v~wf 46 (123)
T cd04370 2 ITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTN------GSKQVKVRWF 46 (123)
T ss_pred CEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCC------CCEEEEEEEE
Confidence 468999999999765 6899999998766421 2236889999
No 26
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.40 E-value=60 Score=30.08 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=42.9
Q ss_pred CcccCcEEEEecCC-------CCCCCceecCCCCcchhhhhcCCCCcEEEEEe-eCCeeeecCCCccc
Q 002603 161 EFCVGDFVWGKIKS-------YPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKP 220 (902)
Q Consensus 161 kF~VGDLVWAKVKG-------YPWWPArVidpsdas~~alK~kkkg~~LVaFF-D~tfAWV~psqLkP 220 (902)
.+++||.|-.+-.. .-||=|+|+.-... ++.++...-+.|+-- ++...||....+..
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg---aR~P~~~tlFQVadVDtG~I~wVnaD~Vt~ 69 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG---ARDPKVPTLFQVADVDTGVIRWVNADEVTH 69 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEecc---ccCCCCCceEEEEEccCCeEEEEEchheee
Confidence 46789999888655 78999999987664 233334445889988 89999999876543
No 27
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=23.21 E-value=1.2e+02 Score=26.82 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=30.2
Q ss_pred CCcccCcEEEEecCCC-CCCCceecCCCCcchhhhhcCCCCcEEEEEeeCCeeeecCCCc
Q 002603 160 YEFCVGDFVWGKIKSY-PWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFAWCHPSQL 218 (902)
Q Consensus 160 ~kF~VGDLVWAKVKGY-PWWPArVidpsdas~~alK~kkkg~~LVaFFD~tfAWV~psqL 218 (902)
.+|..|+.|-++..+- -|.+|+|.+-... ...|.|.|=|++---++..+|
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~---------~~~y~V~Y~DGtel~lke~di 54 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSK---------SDRYTVLYEDGTELELKENDI 54 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETT---------TTEEEEEETTS-EEEEECCCE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEeccc---------CceEEEEEcCCCEEEeccccc
Confidence 6899999999998765 4559999874432 135677655666555555544
No 28
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.83 E-value=41 Score=28.61 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=10.6
Q ss_pred CceEEEEecCCCC
Q 002603 855 PASLYVTFGPTSS 867 (902)
Q Consensus 855 ~a~l~~~f~p~ss 867 (902)
|=++|.+|||.|.
T Consensus 23 gyaiYtaFGppSk 35 (46)
T PRK13183 23 GFGIYTAFGPPSK 35 (46)
T ss_pred hheeeeccCCccc
Confidence 5689999999763
No 29
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=21.65 E-value=1.2e+02 Score=33.73 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=39.0
Q ss_pred CCCCcccCcEEEEecCC-CCCCCceecCCCCcchhhhhcCCCCcEEEEEeeCCee--eecCC
Q 002603 158 GNYEFCVGDFVWGKIKS-YPWWPGQIYDSSDASDYALKVKPRDRLLVAYFDGTFA--WCHPS 216 (902)
Q Consensus 158 ~g~kF~VGDLVWAKVKG-YPWWPArVidpsdas~~alK~kkkg~~LVaFFD~tfA--WV~ps 216 (902)
.-..|.+|-+|.|...+ -.+++|.|+.++.. ....|.|.|||++++ ..++-
T Consensus 195 p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d--------~s~~y~vlffD~~ee~g~~pp~ 248 (264)
T KOG3038|consen 195 PTALFPPGTIVLAVYPGTTCFYKAIVHSTPRD--------GSCDYYVLFFDDEEEDGVSPPT 248 (264)
T ss_pred CccCCCCCCEEEEEcCCcceeeeeEeecCCCC--------CCCcceeeeecCcccccCCCCc
Confidence 44579999999999976 68999999988654 224689999966665 55553
Done!