Query 002603
Match_columns 902
No_of_seqs 175 out of 629
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 15:46:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1323-1327//hhsearch_pdb/002603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llr_A DNA (cytosine-5)-methyl 1.0 1 1 177.5 6.2 97 157-256 12-111 (154)
2 1khc_A DNA cytosine-5 methyltr 1.0 1 1 171.3 4.0 120 157-281 7-131 (147)
3 4fu6_A PC4 and SFRS1-interacti 1.0 1 1 168.1 6.0 85 158-246 19-104 (153)
4 2daq_A WHSC1L1 protein, isofor 1.0 1 1 163.0 8.7 96 156-251 3-102 (110)
5 2gfu_A DNA mismatch repair pro 1.0 1 1 161.7 9.0 99 157-255 18-127 (134)
6 3qby_A Hepatoma-derived growth 1.0 1 1 159.8 6.6 83 160-246 4-87 (94)
7 1ri0_A Hepatoma-derived growth 1.0 1 1 158.5 6.3 85 157-245 15-100 (110)
8 2l89_A PWWP domain-containing 1.0 1 1 156.2 2.6 89 158-246 2-95 (108)
9 1h3z_A Hypothetical 62.8 kDa p 1.0 1 1 149.5 6.2 89 158-246 3-98 (109)
10 3pfs_A Bromodomain and PHD fin 1.0 1 1 143.5 7.7 94 158-251 33-152 (158)
No 1
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=1.00 E-value=1 Score=177.47 Aligned_cols=97 Identities=20% Similarity=0.469 Sum_probs=82.6
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHCC--CC
Q ss_conf 99988612939997048988777112389986145430499990899996-0983333199832472012332115--68
Q 002603 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQ--SS 233 (902)
Q Consensus 157 ~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaKq--sK 233 (902)
.+++.|.+|||||||++|||||||+|+++..... .....++|+|+|| +++|+||.+.+|+||.++++.|.++ ++
T Consensus 12 ~dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k---~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~~e~f~~~~~~K 88 (154)
T 3llr_A 12 EDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGR---SRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQATYNK 88 (154)
T ss_dssp CSSCCCCTTCEEEECCTTSCCEEEEEECGGGTTS---CCCCTTEEEEEETTTCCEEEEEGGGEEEGGGHHHHCCHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCC---CCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHHHHHHHHCCC
T ss_conf 5689886688899966888879978743101023---3688997999995799779976898746321289985650246
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 17899999999999988442036
Q 002603 234 SKSFVNAVQNAVHEIGRLVELKM 256 (902)
Q Consensus 234 sKsF~eAVeEALeEisRRve~gL 256 (902)
...|++||++|++++.+|+..-.
T Consensus 89 ~~~fr~AV~eAle~a~~R~gk~~ 111 (154)
T 3llr_A 89 QPMYRKAIYEVLQVASSRAGKLF 111 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 39999999999999998716899
No 2
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=1.00 E-value=1 Score=171.29 Aligned_cols=120 Identities=24% Similarity=0.446 Sum_probs=90.2
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHC--CCC
Q ss_conf 99988612939997048988777112389986145430499990899996-098333319983247201233211--568
Q 002603 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSR--QSS 233 (902)
Q Consensus 157 ~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaK--qsK 233 (902)
.++..|.+|||||||++|||||||+|+++.... .+....+.|+|+|| +++|+|+.+.+|+||.++.+.+.. .++
T Consensus 7 ~~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~---~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~~~e~f~~~~~~K 83 (147)
T 1khc_A 7 QDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATS---KRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLATFNK 83 (147)
T ss_dssp CSSSSCCTTCEEEEEETTTEEEEEEEECGGGTT---SCCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHHHCCHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEECCCHHHH---CCCCCCCEEEEEEECCCCEEEECHHHCCCCHHHHHHHHHHCCCC
T ss_conf 788667679999983577388997853640111---03577881899994699889976898813447899876403110
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 17899999999999988442036668899445355678655--6899878
Q 002603 234 SKSFVNAVQNAVHEIGRLVELKMTCSCVPKESLDGLARPLA--ANSGVRP 281 (902)
Q Consensus 234 sKsF~eAVeEALeEisRRve~gLsCsC~p~e~~~~~~~q~~--~NsGire 281 (902)
.+.|++||.+|++++.+++... -++|... ..+...++|+ +..|+++
T Consensus 84 ~~~f~kAv~eA~e~A~~r~~~~-~~~~~~~-~~~~~~k~m~~wa~~gf~p 131 (147)
T 1khc_A 84 LVSYRKAMYHTLEKARVRAGKT-FSSSPGE-SLEDQLKPMLEWAHGGFKP 131 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC-CCCCTTC-CHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCCCCCC-CHHHHHHHHHHHHHCCCCC
T ss_conf 7899999999999999983888-7888641-1799999998876316235
No 3
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=168.08 Aligned_cols=85 Identities=24% Similarity=0.538 Sum_probs=74.2
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHCCCCHHH
Q ss_conf 9988612939997048988777112389986145430499990899996-098333319983247201233211568178
Q 002603 158 GNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKS 236 (902)
Q Consensus 158 dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaKqsKsKs 236 (902)
-...|.+|||||||++|||||||+|+++.+.. .....+.|+|+|| +++|+||.+.+|+||.+++.++.++++.+.
T Consensus 19 ~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~----~~~~~~~~~V~FfG~~~~awv~~~~l~~f~e~~~~~~k~~k~k~ 94 (153)
T 4fu6_A 19 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGA----VKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGKPNKRKG 94 (153)
T ss_dssp SGGGCCTTCEEEECCTTSCCEEEEECCCC-------CCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHHHHCSCCSSTT
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEEEECHHHC----CCCCCCEEEEEECCCCCEEEECHHHCCCHHHHHHHHHCCCCHHH
T ss_conf 14689999999882799799997971722421----58988989889668998687578773475767888743104699
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 002603 237 FVNAVQNAVH 246 (902)
Q Consensus 237 F~eAVeEALe 246 (902)
|++||+||..
T Consensus 95 f~~Av~Eie~ 104 (153)
T 4fu6_A 95 FNEGLWEIDN 104 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 4
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=163.03 Aligned_cols=96 Identities=22% Similarity=0.492 Sum_probs=81.0
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCC-CCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHH--HCC
Q ss_conf 89998861293999704898877711238998614543049-9990899996-0983333199832472012332--115
Q 002603 156 SDGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVK-PRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDM--SRQ 231 (902)
Q Consensus 156 ~~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~k-kkg~vLV~FF-D~tyAWV~psqLkPF~enFeem--aKq 231 (902)
...+..|.+|||||||++|||||||+|+++...+..++..+ ..+.|+|+|| +++|+|+++.+|+||.+++..+ .++
T Consensus 3 ~~~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~~~~~~~~ 82 (110)
T 2daq_A 3 SGSSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAEGQT 82 (110)
T ss_dssp SSCCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCCSSSCSSC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHCCCCCCCEEEEEECCCCEEEECHHHCCCCCHHHHHHHHHCC
T ss_conf 77788787998999980798999655389456987776416789838999956898899868987273002477766242
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 68178999999999999884
Q 002603 232 SSSKSFVNAVQNAVHEIGRL 251 (902)
Q Consensus 232 sKsKsF~eAVeEALeEisRR 251 (902)
++.+.|+.||++|.+.+...
T Consensus 83 ~~~k~f~~Al~eA~~~~~~~ 102 (110)
T 2daq_A 83 SINKTFKKALEEAAKRFQEL 102 (110)
T ss_dssp CCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 14399999999999999998
No 5
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=161.74 Aligned_cols=99 Identities=27% Similarity=0.576 Sum_probs=77.8
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-E-CCEEEECCCCCCCCCHHHHHHHC----
Q ss_conf 99988612939997048988777112389986145430499990899996-0-98333319983247201233211----
Q 002603 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-D-GTFAWCHPSQLKPFEKNFEDMSR---- 230 (902)
Q Consensus 157 ~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D-~tyAWV~psqLkPF~enFeemaK---- 230 (902)
+.+..|.+|||||||++|||||||+|++++............+.|+|+|| + ++|+||++.+|+||.+++.....
T Consensus 18 ~~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~~~~k~~~ 97 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGH 97 (134)
T ss_dssp CSSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTSTTTSTTCT
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHCCC
T ss_conf 76777878989999626878778664131010455521478861899989999836887789820075346788763031
Q ss_pred -CCCHHHHHHHHHHHHHHH----HHHHHCC
Q ss_conf -568178999999999999----8844203
Q 002603 231 -QSSSKSFVNAVQNAVHEI----GRLVELK 255 (902)
Q Consensus 231 -qsKsKsF~eAVeEALeEi----sRRve~g 255 (902)
+.+...|+.||++|.+++ .+|++..
T Consensus 98 ~~~~~~~~~~Ai~~A~~a~~~~~eeR~~~~ 127 (134)
T 2gfu_A 98 FYSAKPEILRAMQRADEALNKDKIKRLELA 127 (134)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCHHHHHTTT
T ss_pred CHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 002129999999999998628999999861
No 6
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=1.00 E-value=1 Score=159.80 Aligned_cols=83 Identities=28% Similarity=0.580 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHCCCCHHHHH
Q ss_conf 88612939997048988777112389986145430499990899996-09833331998324720123321156817899
Q 002603 160 YEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSKSFV 238 (902)
Q Consensus 160 ~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaKqsKsKsF~ 238 (902)
..|.+|||||||++|||||||+|+++.+.. ++ ...++|+|+|| +++|||+.+++|+||.++++++.++++.+.|+
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~---~k-~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~~~~k~~k~k~F~ 79 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGA---VK-PPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPNKRKGFN 79 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCTTS---BC-CCTTCEEEEETTTCCEEEECGGGEEEHHHHHHHHCSCCSSTTHH
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEECCCCC---CC-CCCCEEEEEEECCCCCCEECHHHEEEHHHHHHHHCCCCCHHHHH
T ss_conf 737668999995578798997985243015---46-78988999997389833684667567788799874674679999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002603 239 NAVQNAVH 246 (902)
Q Consensus 239 eAVeEALe 246 (902)
+||+||.+
T Consensus 80 ~Al~Eien 87 (94)
T 3qby_A 80 EGLWEIQN 87 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999721
No 7
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=158.53 Aligned_cols=85 Identities=27% Similarity=0.573 Sum_probs=72.6
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCCCCCEEEEEE-ECCEEEECCCCCCCCCHHHHHHHCCCCHH
Q ss_conf 99988612939997048988777112389986145430499990899996-09833331998324720123321156817
Q 002603 157 DGNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKPRDRLLVAYF-DGTFAWCHPSQLKPFEKNFEDMSRQSSSK 235 (902)
Q Consensus 157 ~dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kkkg~vLV~FF-D~tyAWV~psqLkPF~enFeemaKqsKsK 235 (902)
..+..|.+|||||||++|||||||+|++++... ++ ...+.|+|+|| +++|+|+.+.+|+||.++++.+.++++.+
T Consensus 15 ~~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~---~k-~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~k~~~~~K~k 90 (110)
T 1ri0_A 15 NRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAA---VK-STANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRK 90 (110)
T ss_dssp CCSSSCCTTCEEEEEETTEEEEEEEEECCCSSS---SC-CCSSCEEEEETTTTEEEEECSTTEECHHHHHHHCCCCCCCH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEECCCHHH---CC-CCCCEEEEEEECCCCEEEECHHHCCCHHHHHHHHCCCCCCH
T ss_conf 556779889999997689798899983255765---47-89997999992489879987888232156478874542639
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q 002603 236 SFVNAVQNAV 245 (902)
Q Consensus 236 sF~eAVeEAL 245 (902)
.|++||+||.
T Consensus 91 ~f~~Al~Eie 100 (110)
T 1ri0_A 91 GFSEGLWEIE 100 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 8
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=156.23 Aligned_cols=89 Identities=22% Similarity=0.443 Sum_probs=70.1
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCC-CCCEEEEEE-ECCEEEECCCCCCCCCHHH-HHHHC--CC
Q ss_conf 9988612939997048988777112389986145430499-990899996-0983333199832472012-33211--56
Q 002603 158 GNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKP-RDRLLVAYF-DGTFAWCHPSQLKPFEKNF-EDMSR--QS 232 (902)
Q Consensus 158 dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kk-kg~vLV~FF-D~tyAWV~psqLkPF~enF-eemaK--qs 232 (902)
.+..|.+||||||||+|||||||+|+++...+..+++.+. .+.|+|+|| +++|+|+.+.+|+||..+. ..+.. +.
T Consensus 2 ~~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~k~ 81 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSEIAKFLGSSKR 81 (108)
T ss_dssp CSCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHHHHHHHHHCSSS
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEECHHHCEECCHHHHHHHHHCCCC
T ss_conf 87756689999997378588866754745384877602689986999987899789986212446788899998760477
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 81789999999999
Q 002603 233 SSKSFVNAVQNAVH 246 (902)
Q Consensus 233 KsKsF~eAVeEALe 246 (902)
+.+.|+.|+++|++
T Consensus 82 k~k~l~~Aye~A~~ 95 (108)
T 2l89_A 82 KSKELIEAYEASKT 95 (108)
T ss_dssp CCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCC
T ss_conf 87999999999705
No 9
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=149.48 Aligned_cols=89 Identities=22% Similarity=0.488 Sum_probs=67.7
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCEECCCCCCCHHHHHCCC---CCCEEEEEE-ECCEEEECCCCCCCCCHH-HHHHHCC-
Q ss_conf 9988612939997048988777112389986145430499---990899996-098333319983247201-2332115-
Q 002603 158 GNYEFCVGDFVWGKIKSYPWWPGQIYDSSDASDYALKVKP---RDRLLVAYF-DGTFAWCHPSQLKPFEKN-FEDMSRQ- 231 (902)
Q Consensus 158 dg~~F~VGDLVWAKVKGYPWWPArVidpsdase~vlk~kk---kg~vLV~FF-D~tyAWV~psqLkPF~en-FeemaKq- 231 (902)
....|.+|||||||++|||||||+|+++......+++.++ .+.|+|+|| +++|+|+.+.+|+||..+ ++.+...
T Consensus 3 ~~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~ 82 (109)
T 1h3z_A 3 ERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEKP 82 (109)
T ss_dssp CCCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCHHHHHHHHHSC
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHEEECCCHHHHHHHHCC
T ss_conf 86558789999998588088998971607776776503777899979999868999899888992417816778875344
Q ss_pred -CCHHHHHHHHHHHHH
Q ss_conf -681789999999999
Q 002603 232 -SSSKSFVNAVQNAVH 246 (902)
Q Consensus 232 -sKsKsF~eAVeEALe 246 (902)
.+++.+++|++.|++
T Consensus 83 ~~k~k~l~~Ay~~A~~ 98 (109)
T 1h3z_A 83 KPKTASLIKAYKMAQS 98 (109)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 6377999999999822
No 10
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=1.00 E-value=1 Score=143.50 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=67.9
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCEECCCCCC--------------CHHHHHC-------CCCCCEEEEEE-E-CCEEEEC
Q ss_conf 9988612939997048988777112389986--------------1454304-------99990899996-0-9833331
Q 002603 158 GNYEFCVGDFVWGKIKSYPWWPGQIYDSSDA--------------SDYALKV-------KPRDRLLVAYF-D-GTFAWCH 214 (902)
Q Consensus 158 dg~~F~VGDLVWAKVKGYPWWPArVidpsda--------------se~vlk~-------kkkg~vLV~FF-D-~tyAWV~ 214 (902)
+.+.|.+|||||||++|||||||+||+|... +..+++. .....|+|+|| + ++|+|+.
T Consensus 33 ~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~ 112 (158)
T 3pfs_A 33 DRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLP 112 (158)
T ss_dssp CCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEEC
T ss_conf 67778889888986477799987871888866452235653678909998522000356799879999768999368636
Q ss_pred CCCCCCCCHHH--HH-HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99832472012--33-211568178999999999999884
Q 002603 215 PSQLKPFEKNF--ED-MSRQSSSKSFVNAVQNAVHEIGRL 251 (902)
Q Consensus 215 psqLkPF~enF--ee-maKqsKsKsF~eAVeEALeEisRR 251 (902)
..+|+||...- +. .....+...+++||.+|.+.+...
T Consensus 113 ~~~L~Pl~~d~~~D~~kl~e~Kks~~rKAl~~AYe~A~~~ 152 (158)
T 3pfs_A 113 RDKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIH 152 (158)
T ss_dssp GGGEEECSSCHHHHHHHHTTTTTSTHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1357345771665244421378789999999999999997
Done!