Query 002604
Match_columns 901
No_of_seqs 335 out of 1971
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 16:06:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002604.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1323-1327//hhsearch_pdb/002604hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 1.0 1 1 322.4 21.5 210 344-609 5-214 (226)
2 2abk_A Endonuclease III; DNA-r 1.0 1 1 317.6 16.3 208 344-608 1-208 (211)
3 3fsp_A A/G-specific adenine gl 1.0 1 1 311.5 18.3 217 351-624 15-235 (369)
4 3n5n_X A/G-specific adenine DN 1.0 1 1 308.8 18.4 210 347-610 13-235 (287)
5 1kea_A Possible G-T mismatches 1.0 1 1 305.6 17.7 214 343-609 3-219 (221)
6 1kg2_A A/G-specific adenine gl 1.0 1 1 299.7 21.1 197 376-622 24-224 (225)
7 1pu6_A 3-methyladenine DNA gly 1.0 1 1 253.1 14.0 199 348-585 3-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 1.0 1 1 207.9 11.9 148 380-589 42-196 (214)
9 2h56_A DNA-3-methyladenine gly 1.0 1 1 205.9 14.2 188 350-587 30-219 (233)
10 3n0u_A Probable N-glycosylase/ 1.0 1 1 203.4 5.3 167 347-549 18-194 (219)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=322.39 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 74999999998677414788554579970234410246530145774202333423323334586899999985137544
Q 002604 344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423 (901)
Q Consensus 344 ~~~~~~~~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~ 423 (901)
+.+++..+|+++|...|+.+... +.+ .++|+.||++|||+|+++..+++ .|.+|+..
T Consensus 5 ~~~~~~~~i~~~L~~~y~~~~~~---l~~-------~~pfe~Lv~~IlsQqts~~~v~~----~~~~l~~~--------- 61 (226)
T 1orn_A 5 LTKQQIRYCLDEMAKMFPDAHCE---LVH-------RNPFELLIAVVLSAQCTDALVNK----VTKRLFEK--------- 61 (226)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCCC---SCC-------SSHHHHHHHHHHHTTSCHHHHHH----HHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHHHCCCCCCC---CCC-------CCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH---------
T ss_conf 06789999999999876766777---877-------99899999999958786999999----99999998---------
Q ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHHH
Q ss_conf 33586999989999719999999999832991899999999999998760997803431499557999988077776767
Q 002604 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503 (901)
Q Consensus 424 r~~~~~~~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrKT 503 (901)
+|||++|+++++++|+++|+++||+++||++|+++++.+.++|+| .+|.. +++|++|||||+||
T Consensus 62 -------fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~T 125 (226)
T 1orn_A 62 -------YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRD--RDELMKLPGVGRKT 125 (226)
T ss_dssp -------CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT-------SCCSC--HHHHTTSTTCCHHH
T ss_pred -------CCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHHCCCCCHHH
T ss_conf -------789999985999999999997699199999999999999998089-------81899--99999879964899
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999982499134112389999988278899999899999999746844777775322210278251999999999994
Q 002604 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583 (901)
Q Consensus 504 AdvILlfalgrpaiPVDTHV~RIa~RLGlv~~k~tpeevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fG 583 (901)
|++||+|+||+++||||+||.|++.|+||++...++.+++..+++++|. ..+.++|++||.||
T Consensus 126 A~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~-----------------~~~~~~~~~lv~~G 188 (226)
T 1orn_A 126 ANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK-----------------EEWSITHHRMIFFG 188 (226)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCG-----------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCH-----------------HHHHHHHHHHHHHH
T ss_conf 9999999779954000799999999928877899999999999883674-----------------11999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCHHHHHH
Q ss_conf 85544689888889980110446632
Q 002604 584 KVFCTKSKPNCNACPMRGECRHFASA 609 (901)
Q Consensus 584 R~iC~arkP~C~~CPLrdlC~~~~~~ 609 (901)
|.+|++++|+|+.|||++.|+++.+.
T Consensus 189 ~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 189 RYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 99858999999999776542667624
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=317.60 Aligned_cols=208 Identities=21% Similarity=0.273 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 74999999998677414788554579970234410246530145774202333423323334586899999985137544
Q 002604 344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423 (901)
Q Consensus 344 ~~~~~~~~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~ 423 (901)
|.+++..+|+++|...|+.+... +.. .++|+.||++|||+|+++..+++ .|.+|+
T Consensus 1 ~~~~~~~~i~~~L~~~~~~~~~~---~~~-------~~pfe~lv~~Il~qqts~~~v~~----~~~~l~----------- 55 (211)
T 2abk_A 1 MNKAKRLEILTRLRENNPHPTTE---LNF-------SSPFELLIAVLLSAQATDVSVNK----ATAKLY----------- 55 (211)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCCS---SCC-------SSHHHHHHHHHHTTTSCHHHHHH----HHHHHT-----------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCC---CCC-------CCHHHHHHHHHHHCCCCHHHHHH----HHHHHH-----------
T ss_conf 97568999999999885777767---777-------99899999999967788999999----999999-----------
Q ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHHH
Q ss_conf 33586999989999719999999999832991899999999999998760997803431499557999988077776767
Q 002604 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503 (901)
Q Consensus 424 r~~~~~~~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrKT 503 (901)
..+|||++|+++++++|+++|+++||+++||++|+++++.+.+.|+| .+|.. +++|++|||||+||
T Consensus 56 -----~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g-------~~~~~--~~~L~~l~GIG~~t 121 (211)
T 2abk_A 56 -----PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPED--RAALEALPGVGRKT 121 (211)
T ss_dssp -----TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT-------SCCSC--HHHHHHSTTCCHHH
T ss_pred -----HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-------CCHHH--HHHHHHCCCCCHHH
T ss_conf -----98789999987799999999998699769999999999999998499-------84689--99998489997699
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999982499134112389999988278899999899999999746844777775322210278251999999999994
Q 002604 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583 (901)
Q Consensus 504 AdvILlfalgrpaiPVDTHV~RIa~RLGlv~~k~tpeevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fG 583 (901)
|++||+|+||+++||||+||.|++.|+||.. .+++.+++..+++++|. ..+.+||++||.||
T Consensus 122 A~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p~-----------------~~~~~~~~~l~~~G 183 (211)
T 2abk_A 122 ANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPA-----------------EFKVDCHHWLILHG 183 (211)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSCG-----------------GGTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCH-----------------HHHHHHHHHHHHHH
T ss_conf 9999999779973776789999999948888-99999999999985574-----------------21999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHCHHHHH
Q ss_conf 8554468988888998011044663
Q 002604 584 KVFCTKSKPNCNACPMRGECRHFAS 608 (901)
Q Consensus 584 R~iC~arkP~C~~CPLrdlC~~~~~ 608 (901)
|.+|++++|+|+.|||++.|+|+.+
T Consensus 184 ~~~C~~~~P~C~~Cpl~~~C~~~~~ 208 (211)
T 2abk_A 184 RYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp HHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred HHHCCCCCCCCCCCCCHHHCCCCCC
T ss_conf 9977899999999999232788674
No 3
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=1.00 E-value=1 Score=311.45 Aligned_cols=217 Identities=21% Similarity=0.248 Sum_probs=180.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99986774147885545799702344102465301457742023334233233345868999999851375443358699
Q 002604 351 NLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMD 430 (901)
Q Consensus 351 ~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~~~~~ 430 (901)
++.++|..+|+..... + ++....++|+.||++||++|++...+. ..|.+|+..
T Consensus 15 ~~~~~l~~w~~~~~r~---l----pw~~~~~p~~~lv~~il~qqt~~~~~~----~~~~~l~~~---------------- 67 (369)
T 3fsp_A 15 EFQRDLLDWFARERRD---L----PWRKDRDPYKVWVSEVMLQQTRVETVI----PYFEQFIDR---------------- 67 (369)
T ss_dssp HHHHHHHHHHHHHCCC---C----GGGSCCCHHHHHHHHHHTTTSCHHHHH----HHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHCCC---C----CCCCCCCHHHHHHHHHHHCCCCHHHHH----HHHHHHHHH----------------
T ss_conf 9999999999983899---9----999899869999999996507599999----999999997----------------
Q ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99899997199999999998329918999999999999987609978034314995579999880777767679999998
Q 002604 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (901)
Q Consensus 431 ~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrKTAdvILlf 510 (901)
++||++|++++.++|.++|+++|||+ ||++|+++|+.++++|+| .+|.. +++|++|||||+|||++||+|
T Consensus 68 ~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g-------~~p~~--~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 68 FPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGG-------KVPDD--PDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp CCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTT-------CCCCS--HHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCCC-------CCHHH--HHHHHCCCCCCHHHHHHHHHH
T ss_conf 77999997789999999998668499-999999999999998299-------98368--999855998677999999999
Q ss_pred HCCCCEEECCHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 249913411238999998827889999----9899999999746844777775322210278251999999999994855
Q 002604 511 TLHHLAFPVDTNVGRIAVRLGWVPLQP----LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586 (901)
Q Consensus 511 algrpaiPVDTHV~RIa~RLGlv~~k~----tpeevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fGR~i 586 (901)
+||+++|+||+||+|++.|+|+++... ++.+++..+..++|. ..+.+||++||+|||.+
T Consensus 138 ~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~~~~~~l~~~G~~~ 200 (369)
T 3fsp_A 138 AYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY-----------------ENPGAFNEALIELGALV 200 (369)
T ss_dssp HHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCS-----------------SSHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCH-----------------HHHHHHHHHHHHHHHHH
T ss_conf 7799813333899999999727666755432499999999984794-----------------13999999999998876
Q ss_pred CCCCCCCCCCCCCCHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 44689888889980110446632000112368976555
Q 002604 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKS 624 (901)
Q Consensus 587 C~arkP~C~~CPLrdlC~~~~~~~asa~~alp~~~~~~ 624 (901)
|++++|+|+.|||++.|+++... ....+|.+..+.
T Consensus 201 C~~~~P~C~~Cpl~~~C~~~~~~---~~~~~PvK~~kk 235 (369)
T 3fsp_A 201 CTPRRPSCLLCPVQAYCQAFAEG---VAEELPVKMKKT 235 (369)
T ss_dssp SCSSSCCTTTCTTGGGCHHHHHT---CGGGCSCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHCC---CCCCCCCCCCCC
T ss_conf 38999989888784444898669---866588655556
No 4
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=308.75 Aligned_cols=210 Identities=15% Similarity=0.250 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHC--------CCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99999998677414788554579970234410--------2465301457742023334233233345868999999851
Q 002604 347 EKTRNLGDDISVANKLSDNKLIEPNSVEQVLS--------AHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRN 418 (901)
Q Consensus 347 ~~~~~i~~rl~~~~~~p~~~~~~~~~~~~~~~--------~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~ 418 (901)
+....+.++|..+|..-... -+++. ..++|+.||+.||++|+++..+.+ .|.+|+..
T Consensus 13 ~~~~~~~~~ll~Wy~~~~R~-------lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~----~~~rL~~~---- 77 (287)
T 3n5n_X 13 AEVTAFRGSLLSWYDQEKRD-------LPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVIN----YYTGWMQK---- 77 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHH----HHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH----
T ss_conf 89999999999999974999-------9885767655677799899999999967785999999----99999998----
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHH-CC
Q ss_conf 37544335869999899997199999999998329918999999999999987609978034314995579999880-77
Q 002604 419 SGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS-IR 497 (901)
Q Consensus 419 glk~~r~~~~~~~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~Lls-Lp 497 (901)
++||++|++++.++|+++|+++|||+ ||++|+++++.++++||| .+|.+ +++|++ ||
T Consensus 78 ------------fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g-------~~p~~--~~~Ll~~Lp 135 (287)
T 3n5n_X 78 ------------WPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGG-------HMPRT--AETLQQLLP 135 (287)
T ss_dssp ------------CCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTT-------CCCSS--HHHHHHHST
T ss_pred ------------CCCHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHCC-------CCCHH--HHHHHHHCC
T ss_conf ------------78999998499999999999868799-999999999999998089-------97189--999998767
Q ss_pred CCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHH----HHCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 77676799999982499134112389999988278899999899999999----74684477777532221027825199
Q 002604 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLL----ELYPVLESIQKYLWPRLCKLDQRTLY 573 (901)
Q Consensus 498 GVGrKTAdvILlfalgrpaiPVDTHV~RIa~RLGlv~~k~tpeevE~~L~----~llP~le~IQk~lW~rl~~ld~e~~~ 573 (901)
|||+|||++||+|+||+++|+||+||+||+.|+|++....++.++++.+. .++| ...+.
T Consensus 136 GIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp-----------------~~~~~ 198 (287)
T 3n5n_X 136 GVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVD-----------------PARPG 198 (287)
T ss_dssp TCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSC-----------------SSCHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-----------------HHHHH
T ss_conf 9888999999998527997602599999999947888999859999999999997489-----------------88899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHHHH
Q ss_conf 9999999994855446898888899801104466320
Q 002604 574 ELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAF 610 (901)
Q Consensus 574 elH~~LI~fGR~iC~arkP~C~~CPLrdlC~~~~~~~ 610 (901)
+||++||+|||.+|++++|+|+.|||++.|+++.+..
T Consensus 199 ~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~ 235 (287)
T 3n5n_X 199 DFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVE 235 (287)
T ss_dssp HHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9999999981997489999998897765538887165
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=1.00 E-value=1 Score=305.59 Aligned_cols=214 Identities=20% Similarity=0.277 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 67499999999867741478855457997023441024653014577420233342332333458689999998513754
Q 002604 343 SMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQ 422 (901)
Q Consensus 343 ~~~~~~~~~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~ 422 (901)
-|+.++...+.++|..++..-....+ +....++|+.||+.|||+|+++..+++ .|.+|++.
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~p-------w~~~~~pfe~lv~~IlsQqts~~~~~~----~~~~l~~~-------- 63 (221)
T 1kea_A 3 DATNKKRKVFVSTILTFWNTDRRDFP-------WRHTRDPYVILITEILLRRTTAGHVKK----IYDKFFVK-------- 63 (221)
T ss_dssp CTHHHHHHHHHHHHHHHHHHSCCCCG-------GGGCCCHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH--------
T ss_conf 33399999999999999998512376-------877899899999999976487999999----99999998--------
Q ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHH
Q ss_conf 43358699998999971999999999983299189999999999999876099780343149955799998807777676
Q 002604 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502 (901)
Q Consensus 423 ~r~~~~~~~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrK 502 (901)
+|||++|+++++++|+++|+++||+++||++|+++++.+++.|+| .+|.. +++|++|||||+|
T Consensus 64 --------fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~ 126 (221)
T 1kea_A 64 --------YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVPRN--RKAILDLPGVGKY 126 (221)
T ss_dssp --------CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT-------SCCSC--HHHHHTSTTCCHH
T ss_pred --------CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHHCCCCCHH
T ss_conf --------789999977899999999987799779999999999999998089-------96599--9999847997299
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHHH-CCCCCCCC--HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7999999824991341123899999882-78899999--89999999974684477777532221027825199999999
Q 002604 503 SVECVRLLTLHHLAFPVDTNVGRIAVRL-GWVPLQPL--PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQL 579 (901)
Q Consensus 503 TAdvILlfalgrpaiPVDTHV~RIa~RL-Glv~~k~t--peevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~L 579 (901)
||++||+|+||+++||||+||+|++.|+ ||...... ...+....+.++|. ..+.++|++|
T Consensus 127 TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~-----------------~~~~~~~~~l 189 (221)
T 1kea_A 127 TCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPG-----------------GKCRDFNLGL 189 (221)
T ss_dssp HHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCT-----------------TCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH-----------------HHHHHHHHHH
T ss_conf 99999998669980224499999999971887789827899999999986885-----------------2199999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHCHHHHHH
Q ss_conf 999485544689888889980110446632
Q 002604 580 ITFGKVFCTKSKPNCNACPMRGECRHFASA 609 (901)
Q Consensus 580 I~fGR~iC~arkP~C~~CPLrdlC~~~~~~ 609 (901)
|+|||.+|++++|+|+.|||++.|+++...
T Consensus 190 v~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 190 MDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp HHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHCHHHHCC
T ss_conf 999899869999999989981316445317
No 6
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=1.00 E-value=1 Score=299.72 Aligned_cols=197 Identities=18% Similarity=0.257 Sum_probs=163.9
Q ss_pred HHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 41024653014577420233342332333458689999998513754433586999989999719999999999832991
Q 002604 376 VLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMN 455 (901)
Q Consensus 376 ~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~~~~~~ptpEaLa~A~~EELeelIK~~Gf~ 455 (901)
+....++|+.||++|||+|+++..+.+ .|.+|+.. ++||++|+++++++|+++|+++||+
T Consensus 24 w~~~~~pfe~lv~~IlsQqt~~~~v~~----~~~~l~~~----------------~pt~~~la~~~~~~l~~~i~~~G~~ 83 (225)
T 1kg2_A 24 WQIDKTPYKVWLSEVMLQQTQVATVIP----YFERFMAR----------------FPTVTDLANAPLDEVLHLWTGLGYY 83 (225)
T ss_dssp GGSSCCHHHHHHHHHHHTSSCHHHHHH----HHHHHHHH----------------CSSHHHHHHSCHHHHHHHHTTSCCT
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHHHH----------------CCCHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 998899899999999977687999999----99999997----------------8799999877999999999867809
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCC
Q ss_conf 89999999999999876099780343149955799998807777676799999982499134112389999988278899
Q 002604 456 NMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPL 535 (901)
Q Consensus 456 n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrKTAdvILlfalgrpaiPVDTHV~RIa~RLGlv~~ 535 (901)
+||++|+++++.++++|+| .+|.. +++|++|||||+|||++||+|+||+++|+||+||.|++.|+|+...
T Consensus 84 -~kA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~ 153 (225)
T 1kg2_A 84 -ARARNLHKAAQQVATLHGG-------KFPET--FEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG 153 (225)
T ss_dssp -HHHHHHHHHHHHHHHHSTT-------SCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCS
T ss_pred -HHHHHHHHHHHHHHHHHCC-------CCHHH--HHHHHCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCC
T ss_conf -9999999999999998389-------96489--9998658998499999999995799811267999999999748877
Q ss_pred CCCHHHHHHH----HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHC
Q ss_conf 9998999999----997468447777753222102782519999999999948554468988888998011044663200
Q 002604 536 QPLPESLQLH----LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFA 611 (901)
Q Consensus 536 k~tpeevE~~----L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fGR~iC~arkP~C~~CPLrdlC~~~~~~~a 611 (901)
..++..+++. .+.++|. ..+.+||++||.|||.+|++++|+|+.|||++.|+++...
T Consensus 154 ~~~~~~~~~~l~~~~~~~~p~-----------------~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~-- 214 (225)
T 1kg2_A 154 WPGKKEVENKLWSLSEQVTPA-----------------VGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANN-- 214 (225)
T ss_dssp CTTSHHHHHHHHHHHHHHCCS-----------------TTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHT--
T ss_pred CCCCCCHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCC--
T ss_conf 777310399999999987893-----------------4199999999999888768999999999983437897759--
Q ss_pred CCCCCCCCCCC
Q ss_conf 01123689765
Q 002604 612 SARLALPGPEE 622 (901)
Q Consensus 612 sa~~alp~~~~ 622 (901)
....+|.+..
T Consensus 215 -~~~~~p~~~~ 224 (225)
T 1kg2_A 215 -SWALYPGKKP 224 (225)
T ss_dssp -CGGGSSCCCC
T ss_pred -CCCCCCCCCC
T ss_conf -9323789889
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=1.00 E-value=1 Score=253.14 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999867741-4788554579970234410246530145774202333423323334586899999985137544335
Q 002604 348 KTRNLGDDISVA-NKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSR 426 (901)
Q Consensus 348 ~~~~i~~rl~~~-~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~ 426 (901)
...+|+++|... |+.+... + +....++|+.||++|||+|+++..+++ .|.+|+..
T Consensus 3 ~~~~i~~~L~~~~~~~~~~~---~-----~~~~~dpfe~Lv~~ILsQqts~~~v~~----~~~~L~~~------------ 58 (218)
T 1pu6_A 3 DSFEILKALKSLDLLKNAPA---W-----WWPNALKFEALLGAVLTQNTKFEAVLK----SLENLKNA------------ 58 (218)
T ss_dssp CHHHHHHHHHTTTTTTTSCT---T-----SSTTTTSHHHHHHHHHTTTSCHHHHHH----HHHHHHHT------------
T ss_pred CHHHHHHHHHHCCCCCCCCC---C-----CCCCCCHHHHHHHHHHCCCCCHHHHHH----HHHHHHHC------------
T ss_conf 48999999997047655887---6-----888999899999999938887999999----99999970------------
Q ss_pred CCCCCCC------HHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 8699998------9999719999999999832991899999999999998760997803431499557999988077776
Q 002604 427 DRMDSLD------YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG 500 (901)
Q Consensus 427 ~~~~~pt------pEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVG 500 (901)
++++ |++|++++.++|+++|+++||+++||++|+++++.+.+.++++ +.+ +..+++++|++|||||
T Consensus 59 ---~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l--~~~---~~~~~~~~L~~lpGIG 130 (218)
T 1pu6_A 59 ---FILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSF--ENF---KQEVTREWLLDQKGIG 130 (218)
T ss_dssp ---TSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSH--HHH---HHHCCHHHHHTSTTCC
T ss_pred ---CCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH--HHC---CCHHHHHHHHCCCCCC
T ss_conf ---49995433659999809999999999977993999999999999999854986--526---4357999997589927
Q ss_pred HHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 7679999998249913411238999998827889999989999999974----684477777532221027825199999
Q 002604 501 LKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEL----YPVLESIQKYLWPRLCKLDQRTLYELH 576 (901)
Q Consensus 501 rKTAdvILlfalgrpaiPVDTHV~RIa~RLGlv~~k~tpeevE~~L~~l----lP~le~IQk~lW~rl~~ld~e~~~elH 576 (901)
+|||++||+|+||+++||||+||+|++.|+||.. ++|.+++..+++. +|.+-.+....|. +.+.+++||
T Consensus 131 ~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~~--~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~-----~~~~~~~~h 203 (218)
T 1pu6_A 131 KESADAILCYACAKEVMVVDKYSYLFLKKLGIEI--EDYDELQHFFEKGVQENLNSALALYENTIS-----LAQLYARFH 203 (218)
T ss_dssp HHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHTTHHHHHHTTTTCSC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHCCCCHHHHCCCCCC-----HHHHHHHHH
T ss_conf 9999999999779995501799999999849999--999999999997534307603210012334-----399999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999485
Q 002604 577 YQLITFGKV 585 (901)
Q Consensus 577 ~~LI~fGR~ 585 (901)
++||.|||.
T Consensus 204 ~liv~~Gk~ 212 (218)
T 1pu6_A 204 GKIVEFSKQ 212 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999998110
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=1.00 E-value=1 Score=207.93 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=121.8
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CCHH
Q ss_conf 46530145774202333423323334586899999985137544335869999899997199999999998329--9189
Q 002604 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNNM 457 (901)
Q Consensus 380 ~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~~~~~~ptpEaLa~A~~EELeelIK~~G--f~n~ 457 (901)
.++|++||++|||||++|..++++ + .+|+ +.|+.+++++|+++|+++| ||++
T Consensus 42 ~~~fe~Lv~~ILsqqt~~~~v~~a--~--~~L~----------------------~~l~~~~~eeL~~~Ir~~G~rf~~~ 95 (214)
T 3fhf_A 42 EEWFKELCFCILTANFTAEGGIRI--Q--KEIG----------------------DGFLTLPREELEEKLKNLGHRFYRK 95 (214)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH--H--HHHT----------------------THHHHSCHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHH--H--HHHH----------------------HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 996999999998277889999999--9--9999----------------------9998799999999999972477999
Q ss_pred HHHHHHHHHH--HHHHHHCCCCCHHHHCC-CCHHHHHHHH-HCCCCCHHHHHHHHHHHCCCCEEE-CCHHHHHHHHHHCC
Q ss_conf 9999999999--99876099780343149-9557999988-077776767999999824991341-12389999988278
Q 002604 458 LAERMKDFLN--RLVREHGSIDLEWLRDV-PPDKAKDYLL-SIRGLGLKSVECVRLLTLHHLAFP-VDTNVGRIAVRLGW 532 (901)
Q Consensus 458 KAk~Ik~lA~--~Lve~yGgiDLe~L~~V-P~deare~Ll-sLpGVGrKTAdvILlfalgrpaiP-VDTHV~RIa~RLGl 532 (901)
||+||+++++ .+.+.+++ + +..++|++|+ +|||||+|||++||+++ ++++|| ||+||+|+++|+||
T Consensus 96 KA~~I~~~a~~~~l~~~~~~--------~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~ 166 (214)
T 3fhf_A 96 RAEYIVLARRFKNIKDIVES--------FENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNY 166 (214)
T ss_dssp HHHHHHHHGGGCCHHHHHHH--------SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHCCC
T ss_conf 99999999976689998636--------478579999999808998799999999974-998832071999999998489
Q ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999899999999746844777775322210278251999999999994855446
Q 002604 533 VPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589 (901)
Q Consensus 533 v~~k~tpeevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fGR~iC~a 589 (901)
++. .+ +. ++...|.++|.+|+.||+.+|.+
T Consensus 167 ~~~--~~--------k~-----------------lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 167 IDE--IP--------KT-----------------LSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp SSS--CC--------SS-----------------CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCC--CC--------CC-----------------CCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888--87--------76-----------------99999999999999999997979
No 9
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=1.00 E-value=1 Score=205.93 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=148.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998677414788554579970234410246530145774202333423323334586899999985137544335869
Q 002604 350 RNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRM 429 (901)
Q Consensus 350 ~~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~~~~ 429 (901)
..++.++...++..... ...++|+.||++|||+|+++..++ ..|.+|+... |.
T Consensus 30 d~~l~~l~~~~~~~~~~-----------~~~dpfe~Lv~~IlsQqts~~~a~----~~~~rL~~~~---G~--------- 82 (233)
T 2h56_A 30 DSRLFQFIEIAGEVQLP-----------TKPNPFQSLVSSIVEQQLSIKAAS----AIYGRVEQLV---GG--------- 82 (233)
T ss_dssp CHHHHHHHHHHCCEEEE-----------CCSCHHHHHHHHHHHTTSCHHHHH----HHHHHHHHHH---TS---------
T ss_pred CHHHHHHHHHCCCCCCC-----------CCCCHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHH---CC---------
T ss_conf 98999999985999788-----------889999999999990977799999----9999999981---89---------
Q ss_pred CCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99989999719999999999832991899999999999998760997803431499557999988077776767999999
Q 002604 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRL 509 (901)
Q Consensus 430 ~~ptpEaLa~A~~EELeelIK~~Gf~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~LlsLpGVGrKTAdvILl 509 (901)
.+|||++|++++.++| +++||+++||++|+++++.+.+ +.++++.+..+|+++++++|++|||||+|||++||+
T Consensus 83 ~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~--~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill 156 (233)
T 2h56_A 83 ALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVES--GRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMM 156 (233)
T ss_dssp CCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--TSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHHHHHHH--CCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999974999999----8869978999999999999994--898989986499999999998289868899999999
Q ss_pred HHCCCC-EEECCHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 824991-34112389999988278899-9998999999997468447777753222102782519999999999948554
Q 002604 510 LTLHHL-AFPVDTNVGRIAVRLGWVPL-QPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFC 587 (901)
Q Consensus 510 falgrp-aiPVDTHV~RIa~RLGlv~~-k~tpeevE~~L~~llP~le~IQk~lW~rl~~ld~e~~~elH~~LI~fGR~iC 587 (901)
|+||++ +||||+|+.|++.|+|+... .+++.+++..++.|.|. ..+..++.|.+..+..-|
T Consensus 157 ~alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~-----------------~~~a~~~lw~~~~~~~~~ 219 (233)
T 2h56_A 157 FSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPY-----------------ETVACLYLWKAAGTFAEE 219 (233)
T ss_dssp HTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTC-----------------HHHHHHHHHHHHTHHHHH
T ss_pred HHCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCH-----------------HHHHHHHHHHCCCCCCCC
T ss_conf 957999965473299999999852677899999999999883869-----------------999999999646655423
No 10
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=203.43 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999998677414788554579970234410246530145774202333423323334586899999985137544335
Q 002604 347 EKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSR 426 (901)
Q Consensus 347 ~~~~~i~~rl~~~~~~p~~~~~~~~~~~~~~~~~~~f~lLia~iLSaq~td~~vnk~q~T~W~~L~k~l~~~glk~~r~~ 426 (901)
++..+|++++.........+...+. ++....++|++||++|||+|+++..++++ |.+|
T Consensus 18 ~~~~~~~~~~~~~i~~r~~ef~~~~---~~~~~~~~fe~Lv~~ILsqqts~~~~~~a----~~~L--------------- 75 (219)
T 3n0u_A 18 KELERIREEAKPLVEQRFEEFKRLG---EEGTEEDLFCELSFCVLTANWSAEGGIRA----QKEI--------------- 75 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTTSCHHHHHHH----HHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHCCCCHHHHHHH----HHHH---------------
T ss_conf 9999999999999999799876410---37888998999999998088879999999----9999---------------
Q ss_pred CCCCCCCHHHHHCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH-HCCCCCHHH
Q ss_conf 869999899997199999999998329--91899999999999998760997803431499557999988-077776767
Q 002604 427 DRMDSLDYEALRCANVKEISEAIKERG--MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL-SIRGLGLKS 503 (901)
Q Consensus 427 ~~~~~ptpEaLa~A~~EELeelIK~~G--f~n~KAk~Ik~lA~~Lve~yGgiDLe~L~~VP~deare~Ll-sLpGVGrKT 503 (901)
|++|+.++.++|+++|+++| |+++||+||+++++.+ | ++..+...+..+++++|+ +|||||+||
T Consensus 76 -------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i----g--~l~~~~~~~~~~~r~~L~~~l~GVG~kT 142 (219)
T 3n0u_A 76 -------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL----G--KLKNLVKGDPFQSREFLVRNAKGIGWKE 142 (219)
T ss_dssp -------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT----T--THHHHHHSCHHHHHHHHHHHSTTCCHHH
T ss_pred -------HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----H--HHHHHHCCCCHHHHHHHHHHCCCCCHHH
T ss_conf -------99998599999999999844437799999999999999----9--9999866992899999998089978999
Q ss_pred HHHHHHHHCCC-CEEECCHHHHHHHHHHCCCCCC------CCHHHHHHHHHHH
Q ss_conf 99999982499-1341123899999882788999------9989999999974
Q 002604 504 VECVRLLTLHH-LAFPVDTNVGRIAVRLGWVPLQ------PLPESLQLHLLEL 549 (901)
Q Consensus 504 AdvILlfalgr-paiPVDTHV~RIa~RLGlv~~k------~tpeevE~~L~~l 549 (901)
|+|||++ +|+ ++||||+||.|++.|+||++.. +.|.+++..+.++
T Consensus 143 A~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~ 194 (219)
T 3n0u_A 143 ASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKV 194 (219)
T ss_dssp HHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999998-499995112699999999858977676768888999999999999
Done!