Query 002605
Match_columns 901
No_of_seqs 166 out of 251
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 03:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00422 glideosome-associated 99.9 5.3E-25 1.2E-29 243.4 17.6 228 377-649 22-289 (394)
2 cd07378 MPP_ACP5 Homo sapiens 99.9 6E-25 1.3E-29 227.5 16.9 216 382-644 1-238 (277)
3 cd00839 MPP_PAPs purple acid p 99.9 8.9E-25 1.9E-29 227.6 17.6 222 379-643 2-243 (294)
4 PLN02533 probable purple acid 99.9 4.6E-24 9.9E-29 238.4 19.0 210 377-640 135-361 (427)
5 KOG1378 Purple acid phosphatas 99.9 5.2E-21 1.1E-25 213.5 19.0 215 378-645 144-388 (452)
6 KOG2679 Purple (tartrate-resis 99.8 5E-19 1.1E-23 186.9 12.0 224 377-649 39-285 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 99.7 4.9E-16 1.1E-20 160.9 18.5 178 420-640 47-237 (262)
8 cd07396 MPP_Nbla03831 Homo sap 99.7 2.9E-15 6.3E-20 156.9 17.8 169 422-639 40-246 (267)
9 cd07402 MPP_GpdQ Enterobacter 99.6 3.2E-15 6.9E-20 151.4 16.2 168 421-639 39-212 (240)
10 PRK11148 cyclic 3',5'-adenosin 99.6 2.9E-14 6.3E-19 149.8 16.5 199 378-639 11-225 (275)
11 cd07401 MPP_TMEM62_N Homo sapi 99.6 2.3E-14 4.9E-19 150.1 14.5 130 486-624 78-220 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.5 6.6E-14 1.4E-18 143.0 14.0 160 382-619 1-166 (214)
13 cd00842 MPP_ASMase acid sphing 99.5 9E-14 2E-18 146.7 12.7 164 421-615 67-262 (296)
14 PF00149 Metallophos: Calcineu 99.5 3.7E-14 8E-19 126.2 7.1 193 382-614 1-200 (200)
15 cd07393 MPP_DR1119 Deinococcus 99.4 2.1E-12 4.6E-17 133.3 12.8 121 483-620 71-211 (232)
16 cd08163 MPP_Cdc1 Saccharomyces 99.3 2.6E-11 5.7E-16 128.3 14.8 117 486-620 86-234 (257)
17 COG1409 Icc Predicted phosphoh 99.3 7.5E-11 1.6E-15 120.6 15.2 151 421-614 32-193 (301)
18 cd07383 MPP_Dcr2 Saccharomyces 99.3 3.5E-11 7.6E-16 120.6 11.6 152 381-618 2-180 (199)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.2 9.8E-11 2.1E-15 113.5 13.3 141 422-614 23-173 (188)
20 PRK11340 phosphodiesterase Yae 99.2 3.3E-10 7.2E-15 119.9 16.9 197 379-649 47-262 (271)
21 cd07385 MPP_YkuE_C Bacillus su 99.1 8.3E-10 1.8E-14 111.0 15.4 198 381-649 1-215 (223)
22 TIGR03767 P_acnes_RR metalloph 99.1 1.9E-09 4.1E-14 123.0 19.9 126 522-650 291-430 (496)
23 TIGR03729 acc_ester putative p 99.0 1.2E-09 2.5E-14 112.9 10.1 63 548-615 149-222 (239)
24 cd07388 MPP_Tt1561 Thermus the 98.9 3.7E-08 8E-13 103.1 17.0 174 382-613 5-190 (224)
25 cd07400 MPP_YydB Bacillus subt 98.8 1.1E-08 2.3E-13 96.8 8.8 49 569-618 81-129 (144)
26 cd07404 MPP_MS158 Microscilla 98.7 6E-08 1.3E-12 94.3 10.2 52 566-617 97-152 (166)
27 cd00838 MPP_superfamily metall 98.7 8.5E-08 1.9E-12 85.3 9.3 51 569-619 70-120 (131)
28 COG1408 Predicted phosphohydro 98.6 7.7E-08 1.7E-12 103.9 9.3 143 487-649 108-273 (284)
29 TIGR03768 RPA4764 metallophosp 98.6 2.3E-07 5E-12 105.8 13.1 86 524-612 294-409 (492)
30 cd00840 MPP_Mre11_N Mre11 nucl 98.6 9.6E-08 2.1E-12 95.3 8.2 123 485-617 77-204 (223)
31 cd07379 MPP_239FB Homo sapiens 98.5 5.1E-07 1.1E-11 85.5 8.8 47 565-614 67-116 (135)
32 cd07384 MPP_Cdc1_like Saccharo 98.1 1E-05 2.2E-10 81.1 8.3 35 569-621 119-153 (171)
33 cd08166 MPP_Cdc1_like_1 unchar 98.1 1.1E-05 2.4E-10 83.4 8.7 42 569-620 112-153 (195)
34 PF09423 PhoD: PhoD-like phosp 98.0 4.9E-05 1.1E-09 86.2 11.8 90 521-613 252-376 (453)
35 cd08164 MPP_Ted1 Saccharomyces 97.7 5.6E-05 1.2E-09 78.2 6.8 32 569-618 129-160 (193)
36 cd08165 MPP_MPPE1 human MPPE1 97.7 8.1E-05 1.8E-09 73.6 7.4 34 569-620 107-140 (156)
37 cd07397 MPP_DevT Myxococcus xa 97.6 0.0011 2.4E-08 70.8 13.9 58 561-618 142-212 (238)
38 cd07403 MPP_TTHA0053 Thermus t 97.6 0.00025 5.3E-09 67.9 7.9 49 567-618 57-107 (129)
39 cd07406 MPP_CG11883_N Drosophi 97.5 0.0019 4.1E-08 68.5 14.3 133 487-642 73-228 (257)
40 COG2129 Predicted phosphoester 97.4 0.0038 8.3E-08 66.3 15.3 177 381-618 3-191 (226)
41 cd00845 MPP_UshA_N_like Escher 97.4 0.0063 1.4E-07 63.2 16.2 117 487-617 72-209 (252)
42 cd00841 MPP_YfcE Escherichia c 97.3 0.00092 2E-08 64.3 8.4 59 565-639 74-132 (155)
43 PRK05340 UDP-2,3-diacylglucosa 97.3 0.002 4.3E-08 67.4 11.0 18 600-617 185-202 (241)
44 PF12850 Metallophos_2: Calcin 97.3 0.00068 1.5E-08 64.1 7.0 60 565-639 80-139 (156)
45 PF14582 Metallophos_3: Metall 97.2 0.0013 2.8E-08 70.2 9.0 164 422-613 32-217 (255)
46 TIGR01854 lipid_A_lpxH UDP-2,3 97.2 0.0041 9E-08 64.7 12.1 34 600-636 183-216 (231)
47 cd07389 MPP_PhoD Bacillus subt 97.1 0.0026 5.6E-08 65.1 9.2 25 520-544 145-169 (228)
48 cd07411 MPP_SoxB_N Thermus the 97.0 0.0091 2E-07 63.4 13.4 112 489-614 87-219 (264)
49 KOG1432 Predicted DNA repair e 97.0 0.019 4.2E-07 64.3 16.1 194 377-613 49-310 (379)
50 TIGR00040 yfcE phosphoesterase 97.0 0.0027 5.8E-08 61.9 8.5 14 600-613 104-117 (158)
51 cd07410 MPP_CpdB_N Escherichia 97.0 0.014 3E-07 62.2 14.5 123 488-616 86-232 (277)
52 COG1768 Predicted phosphohydro 97.0 0.0085 1.8E-07 62.3 12.0 63 564-635 157-219 (230)
53 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.9 0.013 2.9E-07 63.2 13.7 51 565-618 164-233 (262)
54 KOG3770 Acid sphingomyelinase 96.9 0.007 1.5E-07 71.4 11.6 129 485-617 251-408 (577)
55 cd07409 MPP_CD73_N CD73 ecto-5 96.3 0.097 2.1E-06 56.5 14.9 117 484-615 82-219 (281)
56 TIGR00619 sbcd exonuclease Sbc 96.0 0.015 3.2E-07 62.0 6.8 16 486-501 77-92 (253)
57 cd07386 MPP_DNA_pol_II_small_a 96.0 0.072 1.6E-06 55.8 11.8 18 601-618 190-207 (243)
58 cd07394 MPP_Vps29 Homo sapiens 95.9 0.049 1.1E-06 55.3 9.6 16 600-615 104-119 (178)
59 cd07408 MPP_SA0022_N Staphyloc 95.9 0.17 3.8E-06 53.6 14.2 122 484-616 70-215 (257)
60 COG2908 Uncharacterized protei 95.6 0.028 6.1E-07 60.3 6.9 30 600-636 185-214 (237)
61 PHA02546 47 endonuclease subun 95.5 0.11 2.3E-06 57.8 11.3 13 485-497 77-89 (340)
62 TIGR00583 mre11 DNA repair pro 95.4 0.19 4.1E-06 57.8 13.3 41 566-615 201-241 (405)
63 cd07398 MPP_YbbF-LpxH Escheric 95.3 0.014 3E-07 58.9 3.2 30 600-636 187-216 (217)
64 PRK10966 exonuclease subunit S 95.1 0.017 3.6E-07 65.9 3.7 22 486-507 76-97 (407)
65 cd07382 MPP_DR1281 Deinococcus 94.9 0.95 2.1E-05 49.1 16.1 171 384-614 2-178 (255)
66 COG0420 SbcD DNA repair exonuc 94.9 0.018 3.8E-07 64.4 3.0 52 422-501 40-92 (390)
67 cd07407 MPP_YHR202W_N Saccharo 94.2 1.5 3.2E-05 48.0 15.7 84 523-614 137-231 (282)
68 PRK09419 bifunctional 2',3'-cy 94.1 0.9 1.9E-05 58.4 15.7 46 564-615 838-883 (1163)
69 PRK04036 DNA polymerase II sma 93.6 0.071 1.5E-06 62.5 4.5 55 379-433 241-295 (504)
70 cd07425 MPP_Shelphs Shewanella 93.6 0.028 6.1E-07 58.3 1.0 27 420-446 30-56 (208)
71 cd07390 MPP_AQ1575 Aquifex aeo 93.4 0.07 1.5E-06 53.1 3.5 35 565-617 106-140 (168)
72 cd07391 MPP_PF1019 Pyrococcus 93.4 0.067 1.4E-06 53.4 3.3 15 422-436 41-55 (172)
73 cd07412 MPP_YhcR_N Bacillus su 92.9 2.7 5.8E-05 45.8 14.9 52 564-616 191-243 (288)
74 cd07405 MPP_UshA_N Escherichia 92.7 2.9 6.4E-05 45.5 14.9 50 564-615 173-222 (285)
75 cd07380 MPP_CWF19_N Schizosacc 91.8 0.58 1.3E-05 47.0 7.5 49 566-617 69-126 (150)
76 COG0737 UshA 5'-nucleotidase/2 91.3 3.6 7.7E-05 48.3 14.4 119 489-614 107-247 (517)
77 PRK09453 phosphodiesterase; Pr 91.2 0.29 6.3E-06 49.1 4.8 14 422-435 27-40 (182)
78 PRK09558 ushA bifunctional UDP 90.9 2.9 6.4E-05 49.5 13.4 50 564-615 209-258 (551)
79 TIGR01530 nadN NAD pyrophospha 90.3 3.1 6.8E-05 49.5 13.0 112 487-615 84-219 (550)
80 COG4186 Predicted phosphoester 89.5 1.1 2.5E-05 46.2 7.2 43 563-613 105-147 (186)
81 cd08162 MPP_PhoA_N Synechococc 88.6 5.7 0.00012 44.2 12.6 38 565-615 208-245 (313)
82 cd07381 MPP_CapA CapA and rela 87.7 8.7 0.00019 40.3 12.7 133 483-620 76-225 (239)
83 COG0622 Predicted phosphoester 87.3 2.8 6E-05 43.2 8.5 43 563-613 78-120 (172)
84 smart00854 PGA_cap Bacterial c 85.6 21 0.00046 37.7 14.3 53 564-621 172-224 (239)
85 TIGR01390 CycNucDiestase 2',3' 84.9 13 0.00027 45.4 13.7 45 565-614 196-240 (626)
86 cd07424 MPP_PrpA_PrpB PrpA and 83.9 0.94 2E-05 46.6 3.3 18 421-438 27-44 (207)
87 COG3540 PhoD Phosphodiesterase 83.0 4.5 9.8E-05 47.8 8.5 46 380-439 138-185 (522)
88 TIGR00282 metallophosphoestera 82.9 31 0.00067 38.1 14.5 49 553-613 132-180 (266)
89 TIGR00024 SbcD_rel_arch putati 81.8 1.2 2.7E-05 47.2 3.3 16 422-437 58-73 (225)
90 KOG3662 Cell division control 81.0 2.5 5.4E-05 49.0 5.6 50 422-497 93-144 (410)
91 PRK09420 cpdB bifunctional 2', 79.1 21 0.00045 43.8 12.7 45 565-614 219-263 (649)
92 PHA02239 putative protein phos 77.4 1.7 3.6E-05 46.5 2.6 17 423-439 30-46 (235)
93 PRK00166 apaH diadenosine tetr 75.2 2.4 5.2E-05 46.5 3.2 19 421-439 27-45 (275)
94 COG1311 HYS2 Archaeal DNA poly 73.1 2.4 5.2E-05 49.9 2.6 57 419-496 259-320 (481)
95 PRK09968 serine/threonine-spec 72.4 2.5 5.5E-05 44.3 2.4 43 383-439 16-59 (218)
96 PRK09418 bifunctional 2',3'-cy 72.0 56 0.0012 41.2 14.0 47 565-616 245-291 (780)
97 COG1407 Predicted ICC-like pho 70.4 3.2 6.9E-05 45.0 2.6 79 383-496 21-109 (235)
98 cd07422 MPP_ApaH Escherichia c 66.8 5.1 0.00011 43.6 3.3 19 421-439 25-43 (257)
99 PF09587 PGA_cap: Bacterial ca 62.4 1.4E+02 0.003 31.9 12.9 134 483-621 74-235 (250)
100 cd00144 MPP_PPP_family phospho 58.5 8.2 0.00018 39.4 2.9 18 421-438 23-40 (225)
101 PF10230 DUF2305: Uncharacteri 57.5 21 0.00045 38.7 5.9 21 485-509 3-23 (266)
102 PRK13625 bis(5'-nucleosyl)-tet 56.8 8.5 0.00018 41.1 2.8 50 384-439 3-53 (245)
103 PRK09419 bifunctional 2',3'-cy 56.7 61 0.0013 42.4 10.7 48 565-616 235-282 (1163)
104 PRK11439 pphA serine/threonine 55.6 7.4 0.00016 40.7 2.1 43 383-439 18-61 (218)
105 cd07423 MPP_PrpE Bacillus subt 55.2 9.4 0.0002 40.2 2.8 19 421-439 36-54 (234)
106 KOG4419 5' nucleotidase [Nucle 52.1 49 0.0011 40.5 8.1 126 479-617 120-274 (602)
107 cd07387 MPP_PolD2_C PolD2 (DNA 51.0 20 0.00043 39.3 4.5 55 384-438 2-58 (257)
108 cd07413 MPP_PA3087 Pseudomonas 43.0 22 0.00047 37.6 3.2 12 422-433 33-44 (222)
109 TIGR00668 apaH bis(5'-nucleosy 42.4 19 0.00041 40.1 2.8 19 421-439 27-45 (279)
110 PRK11907 bifunctional 2',3'-cy 41.0 1.3E+02 0.0028 38.3 9.8 45 565-614 310-354 (814)
111 PF14362 DUF4407: Domain of un 38.1 47 0.001 36.5 4.9 99 29-145 8-107 (301)
112 cd03231 ABC_CcmA_heme_exporter 27.6 1.2E+02 0.0025 31.1 5.4 41 535-576 146-186 (201)
113 PF07819 PGAP1: PGAP1-like pro 25.5 2.2E+02 0.0048 30.3 7.3 82 483-574 3-93 (225)
114 cd07421 MPP_Rhilphs Rhilph pho 25.5 60 0.0013 36.8 3.2 23 422-444 34-56 (304)
115 cd03232 ABC_PDR_domain2 The pl 24.4 1.4E+02 0.0031 30.3 5.4 41 535-576 129-169 (192)
116 TIGR02673 FtsE cell division A 24.0 1.2E+02 0.0027 30.9 4.9 25 379-406 26-50 (214)
117 TIGR01189 ccmA heme ABC export 23.2 1.6E+02 0.0034 30.0 5.4 41 535-576 148-188 (198)
118 cd07390 MPP_AQ1575 Aquifex aeo 22.2 85 0.0018 31.4 3.3 18 420-437 40-57 (168)
119 COG2843 PgsA Putative enzyme o 21.9 2.6E+02 0.0055 32.8 7.3 68 562-642 221-289 (372)
120 PF07717 OB_NTP_bind: Oligonuc 21.7 32 0.0007 32.0 0.1 32 250-281 80-111 (114)
121 PRK13543 cytochrome c biogenes 21.5 1.6E+02 0.0035 30.4 5.2 44 535-579 158-201 (214)
122 TIGR02106 cyd_oper_ybgT cyd op 21.4 57 0.0012 25.5 1.4 10 99-108 1-10 (30)
123 TIGR01166 cbiO cobalt transpor 21.2 1.7E+02 0.0036 29.5 5.1 41 535-576 148-188 (190)
124 COG1292 BetT Choline-glycine b 20.7 81 0.0017 38.3 3.1 58 41-98 23-92 (537)
125 PF08173 YbgT_YccB: Membrane b 20.5 61 0.0013 24.9 1.4 10 99-108 1-10 (28)
126 cd03262 ABC_HisP_GlnQ_permease 20.2 1.7E+02 0.0036 29.8 4.9 42 535-577 156-197 (213)
No 1
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.93 E-value=5.3e-25 Score=243.41 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=161.5
Q ss_pred CCCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCC
Q 002605 377 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQP 456 (901)
Q Consensus 377 ~~d~~~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~ 456 (901)
..++.+.|..+||.|.|...|++||++|++...+ -++||++.+||+. ++|-....+.||.+-||..+.+
T Consensus 22 ~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~----------~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~ 90 (394)
T PTZ00422 22 SVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKN----------ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSE 90 (394)
T ss_pred ccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHh----------CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccC
Confidence 4578999999999999999999999999976533 2589999999997 7776655666666666665432
Q ss_pred CCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcc----------------cCCCccccCC
Q 002605 457 PPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHK----------------SWLGGWFMPQ 520 (901)
Q Consensus 457 ~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r----------------~~lgGW~mpQ 520 (901)
+ . ..++.| +|+++|||||..+.++++....+. ..-.+|.||.
T Consensus 91 ~-------------s--------~~L~~P-wy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~ 148 (394)
T PTZ00422 91 E-------------S--------GDMQIP-FFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN 148 (394)
T ss_pred c-------------c--------hhhCCC-eEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc
Confidence 1 1 012345 999999999998899988421110 1135799995
Q ss_pred CcceEEEE----C------------CCeEEEEEEecCCCC------CCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCc
Q 002605 521 KKSYFALQ----L------------PKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWL 578 (901)
Q Consensus 521 ~~SYFAlr----L------------P~~wWLlGLDsql~g------dID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~ 578 (901)
+ ||.+. . ....-++.+||.... +....|.+|+++.++.+....+|+||+.|||.|+
T Consensus 149 ~--yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIyS 226 (394)
T PTZ00422 149 Y--WYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYS 226 (394)
T ss_pred h--hheeeeeeecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceee
Confidence 5 77652 1 122678999997432 2346789999998863344468999999999999
Q ss_pred cccccCccchhhHHHHHhhhh-CCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCCCCC-cccccCC
Q 002605 579 LDWYFNNVSGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLH-PTHVFSN 649 (901)
Q Consensus 579 ~d~~~~~~t~d~l~~Lie~~l-~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGAfLH-PTH~~~~ 649 (901)
.+.++++. .+...+++++ +++|+++||||.|+|||.+.. +.++|||||||+... +++..+.
T Consensus 227 sG~hg~~~---~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~-------gt~yIvSGaGs~~~~~~~~~~~~ 289 (394)
T PTZ00422 227 SGSSKGDS---YLSYYLLPLLKDAQVDLYISGYDRNMEVLTDE-------GTAHINCGSGGNSGRKSIMKNSK 289 (394)
T ss_pred cCCCCCCH---HHHHHHHHHHHHcCcCEEEEccccceEEecCC-------CceEEEeCccccccCCCCCCCCC
Confidence 98765432 2332334544 579999999999999997632 247999999996433 4444343
No 2
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.93 E-value=6e-25 Score=227.53 Aligned_cols=216 Identities=19% Similarity=0.217 Sum_probs=149.8
Q ss_pred eEEEEEeecCCC-CCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCC
Q 002605 382 LWFDFMADTGDG-GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWY 460 (901)
Q Consensus 382 ~wFd~VaDtGDG-~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~ 460 (901)
+.|.++||+|.+ .+.+.++++.|++... .+++||+|++||++|++|...+...++.+.|+..+..
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~----------~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~---- 66 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAA----------ELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA---- 66 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc----
Confidence 479999999987 6888889998886532 1458999999999999987655555555555544321
Q ss_pred cccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEECCC-----eEEE
Q 002605 461 KKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPK-----GWWV 535 (901)
Q Consensus 461 ~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~-----~wWL 535 (901)
++ .+.| +++||||||+.++..+...+.... ....|.+| ..||+++.+. +++|
T Consensus 67 ------------------~~-~~~P-~~~v~GNHD~~~~~~~~~~~~~~~-~~~~~~~~--~~~y~~~~~~~~~~~~~~~ 123 (277)
T cd07378 67 ------------------PS-LQVP-WYLVLGNHDYSGNVSAQIDYTKRP-NSPRWTMP--AYYYRVSFPFPSSDTTVEF 123 (277)
T ss_pred ------------------hh-hcCC-eEEecCCcccCCCchheeehhccC-CCCCccCc--chheEEEeecCCCCCEEEE
Confidence 11 2345 999999999987755443332110 12335554 4588999874 6999
Q ss_pred EEEecCCC---------------CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCcc-chhhHHHHHhhhh
Q 002605 536 FGLDLALH---------------CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL 599 (901)
Q Consensus 536 lGLDsql~---------------gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~-t~d~l~~Lie~~l 599 (901)
++|||+.. +.+...|++||++.+++ . +++++||++|||.+..+...... ..+.+..+++
T Consensus 124 i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~-~-~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~--- 198 (277)
T cd07378 124 IMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAA-S-TADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLK--- 198 (277)
T ss_pred EEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHh-c-CCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHH---
Confidence 99999853 22456899999999974 2 34899999999999775433211 1122233333
Q ss_pred CCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCCCCCcc
Q 002605 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPT 644 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGAfLHPT 644 (901)
+++|+++|+||+|.|++..+.. .+.++||+|+||+.....
T Consensus 199 ~~~v~~vl~GH~H~~~~~~~~~-----~~~~~i~~G~~~~~~~~~ 238 (277)
T cd07378 199 KYKVDAYLSGHDHNLQHIKDDG-----SGTSFVVSGAGSKARPSV 238 (277)
T ss_pred HcCCCEEEeCCcccceeeecCC-----CCcEEEEeCCCcccCCCC
Confidence 4679999999999999987653 234789999888744433
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.92 E-value=8.9e-25 Score=227.65 Aligned_cols=222 Identities=18% Similarity=0.238 Sum_probs=144.9
Q ss_pred CCCeEEEEEeecCC-CCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCCh--hhhhhccccchhhhcC
Q 002605 379 KEDLWFDFMADTGD-GGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQ 455 (901)
Q Consensus 379 d~~~wFd~VaDtGD-G~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~--e~Y~~Rfv~PYe~Al~ 455 (901)
++++.|.++||+|. +.++..++..+.++ .+++|+++++||++|..+.. ++++ .|.+..+...
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~-------------~~~~d~vl~~GDl~~~~~~~~~~~~~-~~~~~~~~~~- 66 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKE-------------LGNYDAILHVGDLAYADGYNNGSRWD-TFMRQIEPLA- 66 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhc-------------cCCccEEEEcCchhhhcCCccchhHH-HHHHHHHHHH-
Confidence 57899999999997 45555556665543 13589999999999998764 3333 2333332111
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHH-HHhhcccC-CCccccCCCcceEEEECCCeE
Q 002605 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFM-RFICHKSW-LGGWFMPQKKSYFALQLPKGW 533 (901)
Q Consensus 456 ~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~-R~Fc~r~~-lgGW~mpQ~~SYFAlrLP~~w 533 (901)
...| ++++|||||......... +.+..+.. ...-....+..||+++.++ +
T Consensus 67 --------------------------~~~P-~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~-v 118 (294)
T cd00839 67 --------------------------SYVP-YMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGP-V 118 (294)
T ss_pred --------------------------hcCC-cEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCC-E
Confidence 0235 999999999876533211 10000000 0000111234699999996 8
Q ss_pred EEEEEecCCCC---CCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCccccccCcc-chhhHHHHHhhhh-CCceeEEE
Q 002605 534 WVFGLDLALHC---DIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRI 607 (901)
Q Consensus 534 WLlGLDsql~g---dID~~Q~~wF~~ll~~~v~-~~d~VIL~tHeP~w~~d~~~~~~-t~d~l~~Lie~~l-~~RV~LvL 607 (901)
++++||++... .+..+|++|+++.+++.-+ ..+|+|+++|+|.|..+...... .....+..+++++ +++|+++|
T Consensus 119 ~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl 198 (294)
T cd00839 119 HFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVL 198 (294)
T ss_pred EEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 99999998654 5778999999999874222 23689999999999876554321 1112222234443 56999999
Q ss_pred cCccCCcceeeecCCC---------CCcccceEEEecCCCCCCCc
Q 002605 608 AGDMHHYMRHSYVPSD---------GPVYVQHLLVNGCGGAFLHP 643 (901)
Q Consensus 608 AGHiHhYqR~~p~~~~---------G~~~~~~lIVsGGGGAfLHP 643 (901)
+||+|.|+|..|..+. ....++.+||+|+||+-+.+
T Consensus 199 ~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~ 243 (294)
T cd00839 199 SGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGL 243 (294)
T ss_pred EccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCc
Confidence 9999999999875321 11246689999999997764
No 4
>PLN02533 probable purple acid phosphatase
Probab=99.92 E-value=4.6e-24 Score=238.37 Aligned_cols=210 Identities=20% Similarity=0.299 Sum_probs=144.2
Q ss_pred CCCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhh--hccccchhhhc
Q 002605 377 SEKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE--RRLFRPFEYAL 454 (901)
Q Consensus 377 ~~d~~~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~--~Rfv~PYe~Al 454 (901)
..+.++.|.++||+|.+.....+++.+.+ .++|+++++||++|.+.....++ .++++|+.
T Consensus 135 p~~~~~~f~v~GDlG~~~~~~~tl~~i~~---------------~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~--- 196 (427)
T PLN02533 135 PSKFPIKFAVSGDLGTSEWTKSTLEHVSK---------------WDYDVFILPGDLSYANFYQPLWDTFGRLVQPLA--- 196 (427)
T ss_pred CCCCCeEEEEEEeCCCCcccHHHHHHHHh---------------cCCCEEEEcCccccccchHHHHHHHHHHhhhHh---
Confidence 33568999999999987655545544321 24799999999999764322221 12223331
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh----HHHHHHhhcccCCCccccCCC------cce
Q 002605 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL----NTFMRFICHKSWLGGWFMPQK------KSY 524 (901)
Q Consensus 455 ~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL----~aF~R~Fc~r~~lgGW~mpQ~------~SY 524 (901)
. ..| ++++|||||..... ..|.. +...|.||.. ..|
T Consensus 197 --------------------------s-~~P-~m~~~GNHE~~~~~~~~~~~f~~------y~~rf~mP~~~~g~~~~~y 242 (427)
T PLN02533 197 --------------------------S-QRP-WMVTHGNHELEKIPILHPEKFTA------YNARWRMPFEESGSTSNLY 242 (427)
T ss_pred --------------------------h-cCc-eEEeCccccccccccccCcCccc------hhhcccCCccccCCCCCce
Confidence 1 235 99999999985321 11111 1234677753 259
Q ss_pred EEEECCCeEEEEEEecCCCCCCCHHHHHHHHHHHHhhcC--CCCeEEEEecCCCCccccccCccc-hhhHHHHHhhhh-C
Q 002605 525 FALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKEQVG--ERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYL-K 600 (901)
Q Consensus 525 FAlrLP~~wWLlGLDsql~gdID~~Q~~wF~~ll~~~v~--~~d~VIL~tHeP~w~~d~~~~~~t-~d~l~~Lie~~l-~ 600 (901)
|+++.+. +++++||++.....+.+|++||++.|++ .+ ..+|+|++.|+|.|..+..+.++. ...++..+++++ +
T Consensus 243 YSfd~g~-vhfI~Lds~~~~~~~~~Q~~WLe~dL~~-~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~ 320 (427)
T PLN02533 243 YSFNVYG-VHIIMLGSYTDFEPGSEQYQWLENNLKK-IDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYK 320 (427)
T ss_pred EEEEECC-EEEEEEeCCccccCchHHHHHHHHHHHh-hcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHH
Confidence 9999987 8999999998777788999999999974 33 347899999999998765443221 122333345544 6
Q ss_pred CceeEEEcCccCCcceeeecCCCC-CcccceEEEecCCCCC
Q 002605 601 GRCKLRIAGDMHHYMRHSYVPSDG-PVYVQHLLVNGCGGAF 640 (901)
Q Consensus 601 ~RV~LvLAGHiHhYqR~~p~~~~G-~~~~~~lIVsGGGGAf 640 (901)
++|+|+|+||+|.|+|..|..... ..+++.+||+|+||.-
T Consensus 321 ~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~ 361 (427)
T PLN02533 321 ARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNR 361 (427)
T ss_pred hCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccc
Confidence 799999999999999998875321 1346799999999964
No 5
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.2e-21 Score=213.50 Aligned_cols=215 Identities=17% Similarity=0.239 Sum_probs=157.4
Q ss_pred CCCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChh-hhh--hccccchhhhc
Q 002605 378 EKEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAF-TYE--RRLFRPFEYAL 454 (901)
Q Consensus 378 ~d~~~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e-~Y~--~Rfv~PYe~Al 454 (901)
++.+..|.+.||+|....++-+...+++.+ .+|++++.||++|..+..+ ..+ .|+++|.++
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~--------------k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As-- 207 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTSTLRNQEENL--------------KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIAS-- 207 (452)
T ss_pred ccCceeEEEEccccccccccchHhHHhccc--------------CCcEEEEecchhhcCCCCccchHHHHhhhhhhhc--
Confidence 458899999999999988887777766543 4799999999999987552 332 577788843
Q ss_pred CCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChH-HHHHHhhcccCCCccccCCCcc------eEEE
Q 002605 455 QPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN-TFMRFICHKSWLGGWFMPQKKS------YFAL 527 (901)
Q Consensus 455 ~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~-aF~R~Fc~r~~lgGW~mpQ~~S------YFAl 527 (901)
..| .+++.||||.---.+ .|. .....|.||-+.| ||++
T Consensus 208 ----------------------------~vP-ymv~~GNHE~d~~~~~~F~------~y~~Rf~mP~~~s~s~~~l~YSf 252 (452)
T KOG1378|consen 208 ----------------------------YVP-YMVCSGNHEIDWPPQPCFV------PYSARFNMPGNSSESDSNLYYSF 252 (452)
T ss_pred ----------------------------cCc-eEEecccccccCCCccccc------ccceeeccCCCcCCCCCceeEEE
Confidence 235 999999998621111 232 2345578886554 9999
Q ss_pred ECCCeEEEEEEecCCCCC--CCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCccccc-cCccch-hhHHHHHhhhh-C
Q 002605 528 QLPKGWWVFGLDLALHCD--IDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWY-FNNVSG-KNVKHLICDYL-K 600 (901)
Q Consensus 528 rLP~~wWLlGLDsql~gd--ID~~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~d~~-~~~~t~-d~l~~Lie~~l-~ 600 (901)
+++. .++++|+|..... ...+|++||++.|+ +++. .+|+|++.|.|.|.++.. +..+.. ...+.-+|+++ +
T Consensus 253 d~G~-vhfv~lsse~~~~~~~~~~QY~WL~~dL~-~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~ 330 (452)
T KOG1378|consen 253 DVGG-VHFVVLSTETYYNFLKGTAQYQWLERDLA-SVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVK 330 (452)
T ss_pred eecc-EEEEEEeccccccccccchHHHHHHHHHH-HhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHH
Confidence 9997 7999999987643 34589999999997 4655 699999999999999773 222221 12223335554 8
Q ss_pred CceeEEEcCccCCcceeeecCCC------C-----CcccceEEEecCCCC--CCCccc
Q 002605 601 GRCKLRIAGDMHHYMRHSYVPSD------G-----PVYVQHLLVNGCGGA--FLHPTH 645 (901)
Q Consensus 601 ~RV~LvLAGHiHhYqR~~p~~~~------G-----~~~~~~lIVsGGGGA--fLHPTH 645 (901)
++|+++|+||.|.|+|..|.... | ...+|.+|+.|+||+ -+.|-.
T Consensus 331 ~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~ 388 (452)
T KOG1378|consen 331 YKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFS 388 (452)
T ss_pred hceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCccc
Confidence 89999999999999999887541 2 245789999999994 444444
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5e-19 Score=186.86 Aligned_cols=224 Identities=19% Similarity=0.209 Sum_probs=155.7
Q ss_pred CCCCCeEEEEEeecC-CCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcC
Q 002605 377 SEKEDLWFDFMADTG-DGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQ 455 (901)
Q Consensus 377 ~~d~~~wFd~VaDtG-DG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~ 455 (901)
.+|+.+.|.+|||+| .|.-.|.+||..|+.-..+. ..|||+-+||+.|-+|-...+..||...|+..+.
T Consensus 39 ~~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l----------~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT 108 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL----------DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYT 108 (336)
T ss_pred CCCCceEEEEEcccccCCchhHHHHHHHHHhHHHhc----------cceEEEecCCcccccCCCCCCChhHHhhhhhccc
Confidence 457899999999999 67777888998887543222 3799999999999999999999999999988765
Q ss_pred CCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEECCCeEEE
Q 002605 456 PPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWV 535 (901)
Q Consensus 456 ~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWL 535 (901)
. |.| +.| ||.|.||||+..+.++++.-...+- -..|.-| +|||..- .. .=+
T Consensus 109 ~-------------pSL----------Qkp-Wy~vlGNHDyrGnV~AQls~~l~~~-d~RW~c~--rsf~~~a-e~-ve~ 159 (336)
T KOG2679|consen 109 A-------------PSL----------QKP-WYSVLGNHDYRGNVEAQLSPVLRKI-DKRWICP--RSFYVDA-EI-VEM 159 (336)
T ss_pred C-------------ccc----------ccc-hhhhccCccccCchhhhhhHHHHhh-ccceecc--cHHhhcc-ee-eee
Confidence 3 232 335 9999999999999999887322111 1124333 4453222 11 123
Q ss_pred EEEecCCC---------CCC------------CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCc-cchhhHHH
Q 002605 536 FGLDLALH---------CDI------------DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN-VSGKNVKH 593 (901)
Q Consensus 536 lGLDsql~---------gdI------------D~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~-~t~d~l~~ 593 (901)
++.|+..- .++ -+.|..||+..+++ ...+|+||+.|||.|+.+.|+.. +..+.+..
T Consensus 160 f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~--S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlP 237 (336)
T KOG2679|consen 160 FFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA--SRAKWKIVVGHHPIKSAGHHGPTKELEKQLLP 237 (336)
T ss_pred eccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHHHH--hhcceEEEecccceehhhccCChHHHHHHHHH
Confidence 33333211 111 13578888888865 45689999999999999876552 22344555
Q ss_pred HHhhhhCCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCCCCCcccccCC
Q 002605 594 LICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSN 649 (901)
Q Consensus 594 Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGAfLHPTH~~~~ 649 (901)
++++ .+|+++++||.|.-|...... ++.+++|||||---=..|+..|+
T Consensus 238 iL~~---n~VdlY~nGHDHcLQhis~~e-----~~iqf~tSGagSkaw~g~~~~~~ 285 (336)
T KOG2679|consen 238 ILEA---NGVDLYINGHDHCLQHISSPE-----SGIQFVTSGAGSKAWRGTDHNPE 285 (336)
T ss_pred HHHh---cCCcEEEecchhhhhhccCCC-----CCeeEEeeCCcccccCCCccCCc
Confidence 5444 699999999999988876332 35589999997755555566654
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.70 E-value=4.9e-16 Score=160.88 Aligned_cols=178 Identities=20% Similarity=0.231 Sum_probs=109.5
Q ss_pred ccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCC
Q 002605 420 LPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 499 (901)
Q Consensus 420 lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDG 499 (901)
.|.+|+|+++||++..+... ++..+..+.+...++. + . .+.++++||||||..+.
T Consensus 47 ~~~pd~ii~~GDl~~~~~~~-~~~~~~~~~~~~~~~~----------------------~-~-~~vp~~~i~GNHD~~~~ 101 (262)
T cd07395 47 NPKPKFVVVCGDLVNAMPGD-ELRERQVSDLKDVLSL----------------------L-D-PDIPLVCVCGNHDVGNT 101 (262)
T ss_pred CCCCCEEEEeCCcCCCCcch-hhHHHHHHHHHHHHhh----------------------c-c-CCCcEEEeCCCCCCCCC
Confidence 35789999999999876543 2322222334333321 0 0 12349999999998533
Q ss_pred h-HHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCCCC------CCCHHHHHHHHHHHHhhc-CCCCeEEEE
Q 002605 500 L-NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALHC------DIDVYQFKFFAELVKEQV-GERDSVIIM 571 (901)
Q Consensus 500 L-~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql~g------dID~~Q~~wF~~ll~~~v-~~~d~VIL~ 571 (901)
. ....+.|.+ . ....||++..++ +++++||++... .++..|++|+++.+++.- ..++++||+
T Consensus 102 ~~~~~~~~f~~-~--------~g~~~y~~~~~~-~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~ 171 (262)
T cd07395 102 PTEESIKDYRD-V--------FGDDYFSFWVGG-VFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVF 171 (262)
T ss_pred CChhHHHHHHH-H--------hCCcceEEEECC-EEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 1 111111211 0 112478888865 899999997532 356789999999997422 245799999
Q ss_pred ecCCCCccccccCcc----chhhHHHHHhhhh-CCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCCC
Q 002605 572 THEPNWLLDWYFNNV----SGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (901)
Q Consensus 572 tHeP~w~~d~~~~~~----t~d~l~~Lie~~l-~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGAf 640 (901)
+|+|.+..+....+. ...+...+ .+++ +++|+++|+||+|.+.+.... | .+++++|+.|..
T Consensus 172 ~H~P~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~~V~~v~~GH~H~~~~~~~~---g----~~~~~~~~~~~~ 237 (262)
T cd07395 172 QHIPWFLEDPDEEDSYFNIPKSVRKPL-LDKFKKAGVKAVFSGHYHRNAGGRYG---G----LEMVVTSAIGAQ 237 (262)
T ss_pred ECcCCccCCCCCCcccCCcCHHHHHHH-HHHHHhcCceEEEECccccCCceEEC---C----EEEEEcCceecc
Confidence 999998654432111 11222333 2323 568999999999987764421 2 367888887763
No 8
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.65 E-value=2.9e-15 Score=156.92 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=105.8
Q ss_pred CccEEEEcccccCcCCCh--hhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCC
Q 002605 422 RGDVLLIGGDLAYPNPSA--FTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG 499 (901)
Q Consensus 422 RgdfLVlgGDlvYP~gs~--e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDG 499 (901)
++|++|++||++..+... +.|+. +.+++ ++...| ++.+|||||+++.
T Consensus 40 ~~d~vv~~GDlv~~~~~~~~~~~~~-~~~~l-----------------------------~~l~~p-~~~v~GNHD~~~~ 88 (267)
T cd07396 40 SLDFVVQLGDIIDGDNARAEEALDA-VLAIL-----------------------------DRLKGP-VHHVLGNHDLYNP 88 (267)
T ss_pred CCCEEEECCCeecCCCchHHHHHHH-HHHHH-----------------------------HhcCCC-EEEecCccccccc
Confidence 389999999999654321 22322 11222 122335 9999999999766
Q ss_pred hHHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCC----------------------------------CCC
Q 002605 500 LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL----------------------------------HCD 545 (901)
Q Consensus 500 L~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql----------------------------------~gd 545 (901)
...... . . ........||++... +|.+++||+.. .+.
T Consensus 89 ~~~~~~---~-~----~~~~~~~~yysf~~~-~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 159 (267)
T cd07396 89 SREYLL---L-Y----TLLGLGAPYYSFSPG-GIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGG 159 (267)
T ss_pred cHhhhh---c-c----cccCCCCceEEEecC-CcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCc
Confidence 332221 0 0 111133458999876 69999999953 345
Q ss_pred CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCc--cchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCC
Q 002605 546 IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSD 623 (901)
Q Consensus 546 ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~--~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~ 623 (901)
++..|++|+++.+++..+++.++||++|||.+..+..... ...+.+..++++ ..+|+++|+||+|.++... . .
T Consensus 160 l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~--~~~V~~v~~GH~H~~~~~~-~--~ 234 (267)
T cd07396 160 IGEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRA--YGCVKACISGHDHEGGYAQ-R--H 234 (267)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHh--CCCEEEEEcCCcCCCCccc-c--C
Confidence 7789999999999754345678999999999865431111 111222333333 1479999999999886443 1 1
Q ss_pred CCcccceEEEecCCCC
Q 002605 624 GPVYVQHLLVNGCGGA 639 (901)
Q Consensus 624 G~~~~~~lIVsGGGGA 639 (901)
+.+++++|+=+-
T Consensus 235 ----gi~~~~~~a~~~ 246 (267)
T cd07396 235 ----GIHFLTLEGMVE 246 (267)
T ss_pred ----CeeEEEechhhc
Confidence 236788776543
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.64 E-value=3.2e-15 Score=151.41 Aligned_cols=168 Identities=21% Similarity=0.325 Sum_probs=106.9
Q ss_pred cCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 002605 421 PRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL 500 (901)
+++|++|++||++.. ++.++|+. +.+ .+ ++.+.| ++.||||||..+.
T Consensus 39 ~~~d~vi~~GDl~~~-~~~~~~~~-~~~----~l-------------------------~~~~~p-~~~v~GNHD~~~~- 85 (240)
T cd07402 39 PRPDLVLVTGDLTDD-GSPESYER-LRE----LL-------------------------AALPIP-VYLLPGNHDDRAA- 85 (240)
T ss_pred CCCCEEEECccCCCC-CCHHHHHH-HHH----HH-------------------------hhcCCC-EEEeCCCCCCHHH-
Confidence 578999999999975 34344432 211 11 122335 9999999998533
Q ss_pred HHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCCC----CCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002605 501 NTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH----CDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (901)
Q Consensus 501 ~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql~----gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (901)
+.+++..... .....+|+++.+. +.++++|+... +.++..|++|+++.+++ . +++++|+++|+|+
T Consensus 86 --~~~~~~~~~~------~~~~~~~~~~~~~-~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~-~-~~~~~il~~H~pp 154 (240)
T cd07402 86 --MRAVFPELPP------APGFVQYVVDLGG-WRLILLDSSVPGQHGGELCAAQLDWLEAALAE-A-PDKPTLVFLHHPP 154 (240)
T ss_pred --HHHhhccccc------cccccceeEecCC-EEEEEEeCCCCCCcCCEECHHHHHHHHHHHHh-C-CCCCEEEEECCCC
Confidence 3343322110 1223467888885 89999998753 34678999999999974 2 3689999999999
Q ss_pred Ccccccc-CccchhhHHHHHhhhhCC-ceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCC
Q 002605 577 WLLDWYF-NNVSGKNVKHLICDYLKG-RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (901)
Q Consensus 577 w~~d~~~-~~~t~d~l~~Lie~~l~~-RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGA 639 (901)
+...... +.....+.+.+.+-+-++ +++++|+||+|.++..... +.+++++|+.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~-------g~~~~~~gs~~~ 212 (240)
T cd07402 155 FPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWG-------GIPLLTAPSTCH 212 (240)
T ss_pred ccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEEC-------CEEEEEcCccee
Confidence 7653211 111111222232222245 8999999999987665431 237788888664
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.58 E-value=2.9e-14 Score=149.83 Aligned_cols=199 Identities=19% Similarity=0.276 Sum_probs=112.7
Q ss_pred CCCCeEEEEEeecCC---C------CCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhcccc
Q 002605 378 EKEDLWFDFMADTGD---G------GNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFR 448 (901)
Q Consensus 378 ~d~~~wFd~VaDtGD---G------~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~ 448 (901)
+++++.|..++|+== . .+..-+..+.+++-. ...+.+|+||++||++-. ++.++|+. +.+
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~---------~~~~~~D~vvitGDl~~~-~~~~~~~~-~~~ 79 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIR---------AQQHEFDLIVATGDLAQD-HSSEAYQH-FAE 79 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHH---------hhCCCCCEEEECCCCCCC-CCHHHHHH-HHH
Confidence 347799999999851 1 111122333332210 013568999999999873 55555543 222
Q ss_pred chhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEE
Q 002605 449 PFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQ 528 (901)
Q Consensus 449 PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlr 528 (901)
.+ ++++.| ++.||||||.... +.+.+... ++. ..++.+.
T Consensus 80 ~l-----------------------------~~l~~P-v~~v~GNHD~~~~---~~~~~~~~----~~~----~~~~~~~ 118 (275)
T PRK11148 80 GI-----------------------------APLRKP-CVWLPGNHDFQPA---MYSALQDA----GIS----PAKHVLI 118 (275)
T ss_pred HH-----------------------------hhcCCc-EEEeCCCCCChHH---HHHHHhhc----CCC----ccceEEe
Confidence 22 223345 9999999998644 33333221 121 1233333
Q ss_pred CCCeEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccc-CccchhhHHHHHhhhh-CC-
Q 002605 529 LPKGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF-NNVSGKNVKHLICDYL-KG- 601 (901)
Q Consensus 529 LP~~wWLlGLDsql----~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~-~~~t~d~l~~Lie~~l-~~- 601 (901)
..+|++++||+.. .+.++..|++|+++.+++ . +++++||+.|||+...+..+ +.....+...+ .+++ ++
T Consensus 119 -~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~-~-~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l-~~ll~~~~ 194 (275)
T PRK11148 119 -GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLAD-A-PERHTLVLLHHHPLPAGCAWLDQHSLRNAHEL-AEVLAKFP 194 (275)
T ss_pred -cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhh-C-CCCCeEEEEcCCCCCCCcchhhccCCCCHHHH-HHHHhcCC
Confidence 4459999999975 456788999999999974 3 34566666665544333221 11122233333 2323 44
Q ss_pred ceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCC
Q 002605 602 RCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (901)
Q Consensus 602 RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGA 639 (901)
+|+++|+||+|........ +..++++++.+.
T Consensus 195 ~v~~vl~GH~H~~~~~~~~-------gi~~~~~ps~~~ 225 (275)
T PRK11148 195 NVKAILCGHIHQELDLDWN-------GRRLLATPSTCV 225 (275)
T ss_pred CceEEEecccChHHhceEC-------CEEEEEcCCCcC
Confidence 7999999999985443211 225677666554
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.57 E-value=2.3e-14 Score=150.13 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=81.4
Q ss_pred cEEEeCCCCCCCCCh--HHHHHHhhcccCCCccccCCCcceEE-EECCCeEEEEEEecCCC----------CCCCHHHHH
Q 002605 486 QCYIIPGNHDWFDGL--NTFMRFICHKSWLGGWFMPQKKSYFA-LQLPKGWWVFGLDLALH----------CDIDVYQFK 552 (901)
Q Consensus 486 ~vfAIPGNHDWYDGL--~aF~R~Fc~r~~lgGW~mpQ~~SYFA-lrLP~~wWLlGLDsql~----------gdID~~Q~~ 552 (901)
+++.||||||.|+-. +.+.+++.+ + .++.++...+|+. .+.+ ++.++|||++.. +.++..|++
T Consensus 78 p~~~v~GNHD~~~~~~~~~~~~~~~~--y-~~~~~~~~~~~~~~~~~~-~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 78 KWFDIRGNHDLFNIPSLDSENNYYRK--Y-SATGRDGSFSFSHTTRFG-NYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eEEEeCCCCCcCCCCCccchhhHHHH--h-heecCCCccceEEEecCC-CEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 499999999997321 122222211 1 1222222222322 2334 499999999742 567789999
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCCC
Q 002605 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDG 624 (901)
Q Consensus 553 wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G 624 (901)
|+++.+++ .++++++||++|+|.+..+..... ....+..+++ +++|+++|+||+|.+++-.|....|
T Consensus 154 wL~~~L~~-~~~~~~~IV~~HhP~~~~~~~~~~-~~~~~~~ll~---~~~v~~vl~GH~H~~~~~~p~h~~~ 220 (256)
T cd07401 154 RLEKELEK-STNSNYTIWFGHYPTSTIISPSAK-SSSKFKDLLK---KYNVTAYLCGHLHPLGGLEPVHYAG 220 (256)
T ss_pred HHHHHHHh-cccCCeEEEEEcccchhccCCCcc-hhHHHHHHHH---hcCCcEEEeCCccCCCcceeeeecC
Confidence 99998864 455679999999999654322111 1112333333 4689999999999999977765444
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.54 E-value=6.6e-14 Score=142.96 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=96.2
Q ss_pred eEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCc
Q 002605 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (901)
Q Consensus 382 ~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~ 461 (901)
+.|.+++||--+.+..-...+...+..++. ....++|+++++||++..+...++|..-. +-++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~------~~~~~~d~iv~~GDl~~~~~~~~~~~~~~-~~~~---------- 63 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDN------AEALNIAFVLHLGDIVDDGDNDAEWEAAD-KAFA---------- 63 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHH------HHHcCCCEEEECCCccCCCCCHHHHHHHH-HHHH----------
Confidence 468899999765443222111111111111 11235799999999998655444443211 1111
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecC
Q 002605 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLA 541 (901)
Q Consensus 462 ~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsq 541 (901)
++++...| ++.+||||| .++++|+
T Consensus 64 ----------------~l~~~~~p-~~~~~GNHD--------------------------------------~~~~ld~- 87 (214)
T cd07399 64 ----------------RLDKAGIP-YSVLAGNHD--------------------------------------LVLALEF- 87 (214)
T ss_pred ----------------HHHHcCCc-EEEECCCCc--------------------------------------chhhCCC-
Confidence 11111234 999999999 1344443
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCcc----chhhHHHHHhhhh-CC-ceeEEEcCccCCcc
Q 002605 542 LHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV----SGKNVKHLICDYL-KG-RCKLRIAGDMHHYM 615 (901)
Q Consensus 542 l~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~----t~d~l~~Lie~~l-~~-RV~LvLAGHiHhYq 615 (901)
.++..|++|+++++++ .++.++|+++|||.+..+...+.. ...+.+..+++++ ++ +|+++|+||+|.+.
T Consensus 88 ---~~~~~ql~WL~~~L~~--~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 88 ---GPRDEVLQWANEVLKK--HPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred ---CCCHHHHHHHHHHHHH--CCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 3568999999999974 446799999999999665432211 1122233344555 44 79999999999987
Q ss_pred eeee
Q 002605 616 RHSY 619 (901)
Q Consensus 616 R~~p 619 (901)
+...
T Consensus 163 ~~~~ 166 (214)
T cd07399 163 RTTL 166 (214)
T ss_pred eEEE
Confidence 7765
No 13
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.51 E-value=9e-14 Score=146.75 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=102.1
Q ss_pred cCccEEEEcccccCcCCChhhhh-------hccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCC
Q 002605 421 PRGDVLLIGGDLAYPNPSAFTYE-------RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 493 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~-------~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGN 493 (901)
+.+||+|++||++......+..+ ..+.+.++.. .+..++++++||
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------~~~~pv~~~~GN 118 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA----------------------------FPDTPVYPALGN 118 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh----------------------------CCCCCEEEcCCC
Confidence 67899999999999875432221 1222222211 122349999999
Q ss_pred CCCCCC--------hHHH----HHHhhcccCCC--ccccCCCcceEEEECCCeEEEEEEecCCCC-----------CCCH
Q 002605 494 HDWFDG--------LNTF----MRFICHKSWLG--GWFMPQKKSYFALQLPKGWWVFGLDLALHC-----------DIDV 548 (901)
Q Consensus 494 HDWYDG--------L~aF----~R~Fc~r~~lg--GW~mpQ~~SYFAlrLP~~wWLlGLDsql~g-----------dID~ 548 (901)
||.+.. .+.+ ...+.. |+. +..+-.+..||+..+..++++++||++.-. ....
T Consensus 119 HD~~p~~~~~~~~~~~~~~~~~~~~w~~--~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~ 196 (296)
T cd00842 119 HDSYPVNQFPPNNSPSWLYDALAELWKS--WLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPA 196 (296)
T ss_pred CCCCcccccCCcccccHHHHHHHHHHHh--hcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHH
Confidence 998743 1111 111111 110 111223457999997777999999997421 2236
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 549 YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 549 ~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
.|++||+++|++..+.+.+|||++|+|....+........+.+..+++++ +..|...|+||+|..+
T Consensus 197 ~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y-~~~i~~~~~GH~H~d~ 262 (296)
T cd00842 197 GQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRY-SDTIAGQFFGHTHRDE 262 (296)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeccCCCCcccccchHHHHHHHHHHHHH-HHhhheeeecccccce
Confidence 89999999998655566899999999997654321111234455566664 3447899999999643
No 14
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.50 E-value=3.7e-14 Score=126.22 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=95.0
Q ss_pred eEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCc
Q 002605 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (901)
Q Consensus 382 ~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~ 461 (901)
+.|.+++|+.-+.+..........+.. ..+++|++|++||+++.+...+.....+. .....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~----------~~~~~d~ii~~GD~~~~~~~~~~~~~~~~-~~~~~-------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIA----------AENKPDFIIFLGDLVDGGNPSEEWRAQFW-FFIRL-------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHH----------HHTTTSEEEEESTSSSSSSHHHHHHHHHH-HHHHH--------
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHh----------ccCCCCEEEeeccccccccccccchhhhc-cchhh--------
Confidence 478899999866544421112111111 13568999999999998776544444331 01000
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhc-ccC--CC-ccccCCCcceEEEECCCeEEEEE
Q 002605 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICH-KSW--LG-GWFMPQKKSYFALQLPKGWWVFG 537 (901)
Q Consensus 462 ~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~-r~~--lg-GW~mpQ~~SYFAlrLP~~wWLlG 537 (901)
.. ...+++.++||||++.+.......... ... .. ++...++. ......... +...
T Consensus 62 ------------------~~-~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~ 120 (200)
T PF00149_consen 62 ------------------LN-PKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNN-KVIFDNDNF-WFNS 120 (200)
T ss_dssp ------------------HH-TTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESS-EEEEEETTE-EEEE
T ss_pred ------------------hh-ccccccccccccccceeccccccccccccccccccccccccCcc-eeeeccccc-cccc
Confidence 11 223499999999998654433222111 110 00 01111110 012222222 1222
Q ss_pred EecCCCCCCCH-HHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCcc-chhhHHHHHhhhh-CCceeEEEcCccCCc
Q 002605 538 LDLALHCDIDV-YQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNV-SGKNVKHLICDYL-KGRCKLRIAGDMHHY 614 (901)
Q Consensus 538 LDsql~gdID~-~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~-t~d~l~~Lie~~l-~~RV~LvLAGHiHhY 614 (901)
.+......... .|..|..........+.+++||++|+|.+......... ........++.++ +.+|+++++||+|.|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 121 GNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccccccchhcccccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 22111111122 33333333333334557899999999999885543211 0011122222322 579999999999986
No 15
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.40 E-value=2.1e-12 Score=133.28 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCCCCCC-ChHHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCCC-----------------C
Q 002605 483 DGPQCYIIPGNHDWFD-GLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----------------C 544 (901)
Q Consensus 483 ~gP~vfAIPGNHDWYD-GL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql~-----------------g 544 (901)
..| +++||||||+|. +.+.+.+.+.+ .++....+ .++.++. +.|+|++.... +
T Consensus 71 ~~~-v~~V~GNHD~~~~~~~~~~~~l~~----~~~~~~~n---~~~~~~~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 141 (232)
T cd07393 71 PGT-KVLLKGNHDYWWGSASKLRKALEE----SRLALLFN---NAYIDDD-VAICGTRGWDNPGNPWPPINETLKVEEDE 141 (232)
T ss_pred CCC-eEEEeCCccccCCCHHHHHHHHHh----cCeEEecc---CcEEECC-EEEEEEEeeCCCCCccccccccccchhHH
Confidence 345 899999999864 34444443322 12322212 2345554 89999874211 1
Q ss_pred CCCHHHHHHHHHHHHhhcCC--CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeec
Q 002605 545 DIDVYQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (901)
Q Consensus 545 dID~~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~ 620 (901)
.+...|.+|+++.+++..+. +.++|+++|+|.+..+. ..+.+..++++ .+++++++||+|++++..|-
T Consensus 142 ~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~-----~~~~~~~~~~~---~~v~~vl~GH~H~~~~~~~~ 211 (232)
T cd07393 142 KIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG-----DDSPISKLIEE---YGVDICVYGHLHGVGRDRAI 211 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC-----CHHHHHHHHHH---cCCCEEEECCCCCCcccccc
Confidence 11245899999988742222 24699999999876532 11222333334 47999999999998876644
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.31 E-value=2.6e-11 Score=128.26 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=76.8
Q ss_pred cEEEeCCCCCCCCC-------hHHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCCC-----CCCCHHHHHH
Q 002605 486 QCYIIPGNHDWFDG-------LNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLALH-----CDIDVYQFKF 553 (901)
Q Consensus 486 ~vfAIPGNHDWYDG-------L~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql~-----gdID~~Q~~w 553 (901)
+++.||||||..-+ .+.|.++|.. .++++..++ |.+++||+... +.+...|.+|
T Consensus 86 pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~-------------~~~~~~~~~-~~fV~Lds~~l~~~~~~~~~~~~~~~ 151 (257)
T cd08163 86 MVESLPGNHDIGFGNGVVLPVRQRFEKYFGP-------------TSRVIDVGN-HTFVILDTISLSNKDDPDVYQPPREF 151 (257)
T ss_pred eEEEeCCCcccCCCCCCCHHHHHHHHHHhCC-------------CceEEEECC-EEEEEEccccccCCcccccchhHHHH
Confidence 49999999997322 2233333331 246788875 89999999742 2355689999
Q ss_pred HHHHHHhhcCCCCeEEEEecCCCCccccccCc--------------cchh-hH-----HHHHhhhhCCceeEEEcCccCC
Q 002605 554 FAELVKEQVGERDSVIIMTHEPNWLLDWYFNN--------------VSGK-NV-----KHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 554 F~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~--------------~t~d-~l-----~~Lie~~l~~RV~LvLAGHiHh 613 (901)
+++.+++ .+++.++||++|+|.|-...-.-+ ...+ .+ ..+++. -+++++||||+|+
T Consensus 152 l~~~l~~-~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~---~~P~~vfsGhdH~ 227 (257)
T cd08163 152 LHSFSAM-KVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKA---VQPVIAFSGDDHD 227 (257)
T ss_pred HHhhhhc-cCCCCcEEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHh---hCCcEEEecCCCc
Confidence 9998753 456789999999999976431100 0011 11 233333 4789999999999
Q ss_pred cceeeec
Q 002605 614 YMRHSYV 620 (901)
Q Consensus 614 YqR~~p~ 620 (901)
|=.+.-.
T Consensus 228 ~C~~~h~ 234 (257)
T cd08163 228 YCEVVHE 234 (257)
T ss_pred cceeEcc
Confidence 8666533
No 17
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.27 E-value=7.5e-11 Score=120.62 Aligned_cols=151 Identities=23% Similarity=0.331 Sum_probs=93.5
Q ss_pred cCccEEEEcccccCcCCChhhhhhc--cccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCC
Q 002605 421 PRGDVLLIGGDLAYPNPSAFTYERR--LFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFD 498 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~e~Y~~R--fv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYD 498 (901)
+++|+||++||++-. |..++|+.. +.+ .. ....| ++.+|||||-+.
T Consensus 32 ~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~----~~--------------------------~~~~~-~~~vpGNHD~~~ 79 (301)
T COG1409 32 LKPDLLVVTGDLTND-GEPEEYRRLKELLA----RL--------------------------ELPAP-VIVVPGNHDARV 79 (301)
T ss_pred CCCCEEEEccCcCCC-CCHHHHHHHHHHHh----hc--------------------------cCCCc-eEeeCCCCcCCc
Confidence 467999999999987 777677643 222 00 11334 999999999877
Q ss_pred ChHHHHHHhhcccCCCccccCCCcceEEE-ECCCeEEEEEEecCC----CCCCCHHHHHHHHHHHHhhcCCC--CeEEEE
Q 002605 499 GLNTFMRFICHKSWLGGWFMPQKKSYFAL-QLPKGWWVFGLDLAL----HCDIDVYQFKFFAELVKEQVGER--DSVIIM 571 (901)
Q Consensus 499 GL~aF~R~Fc~r~~lgGW~mpQ~~SYFAl-rLP~~wWLlGLDsql----~gdID~~Q~~wF~~ll~~~v~~~--d~VIL~ 571 (901)
.-........... ..+... .-..+|+++++|+.. .|.++..|++|+++.+++ .... +.+|++
T Consensus 80 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~-~~~~~~~~~v~~ 148 (301)
T COG1409 80 VNGEAFSDQFFNR----------YAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAA-APERAKDTVVVL 148 (301)
T ss_pred hHHHHhhhhhccc----------CcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHh-CccccCceEEEe
Confidence 6433332222111 011111 121459999999975 366789999999999974 2222 377889
Q ss_pred ecCCCCccccccCccchhhHHHHHhhhhCCc--eeEEEcCccCCc
Q 002605 572 THEPNWLLDWYFNNVSGKNVKHLICDYLKGR--CKLRIAGDMHHY 614 (901)
Q Consensus 572 tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~R--V~LvLAGHiHhY 614 (901)
.|||..............+...+........ |+++|+||+|--
T Consensus 149 ~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 149 HHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred cCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 9999887765544322222222212222233 999999999943
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.25 E-value=3.5e-11 Score=120.58 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=93.9
Q ss_pred CeEEEEEeecCCCCCCc------h--HHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhh---hccccc
Q 002605 381 DLWFDFMADTGDGGNSS------Y--SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYE---RRLFRP 449 (901)
Q Consensus 381 ~~wFd~VaDtGDG~dSt------Y--tVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~---~Rfv~P 449 (901)
++.+..++|+.-|.+.. + ...+.+.+ .++ ..++|++|++||+++.....++.. .+++++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~ 71 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIER-VLD---------AEKPDLVVLTGDLITGENTNDNSTSALDKAVSP 71 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHH-HHh---------hcCCCEEEECCccccCCCCchHHHHHHHHHHHH
Confidence 56788899988655432 1 11222221 111 235799999999999766532122 222233
Q ss_pred hhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEEC
Q 002605 450 FEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQL 529 (901)
Q Consensus 450 Ye~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrL 529 (901)
.. +...| ++++|||||
T Consensus 72 l~-----------------------------~~~~p-~~~~~GNHD---------------------------------- 87 (199)
T cd07383 72 MI-----------------------------DRKIP-WAATFGNHD---------------------------------- 87 (199)
T ss_pred HH-----------------------------HcCCC-EEEECccCC----------------------------------
Confidence 21 11234 999999999
Q ss_pred CCeEEEEEEecCCCCCCCHHHHHHHHHHHHhhc---CCCCeEEEEecCCCCccccccC----------c-c-chhhHHHH
Q 002605 530 PKGWWVFGLDLALHCDIDVYQFKFFAELVKEQV---GERDSVIIMTHEPNWLLDWYFN----------N-V-SGKNVKHL 594 (901)
Q Consensus 530 P~~wWLlGLDsql~gdID~~Q~~wF~~ll~~~v---~~~d~VIL~tHeP~w~~d~~~~----------~-~-t~d~l~~L 594 (901)
..+.++..|.+||++.+++.. ....+.++++|+|......... + . ...+...+
T Consensus 88 ------------~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 155 (199)
T cd07383 88 ------------GYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGL 155 (199)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHH
Confidence 346688999999999987421 3457999999999876532211 1 0 11222333
Q ss_pred Hhhhh-CCceeEEEcCccCCcceee
Q 002605 595 ICDYL-KGRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 595 ie~~l-~~RV~LvLAGHiHhYqR~~ 618 (901)
++.++ ..+|+++++||+|.++...
T Consensus 156 ~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 156 FKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred HHHHHHcCCeEEEEeCCCCCcceec
Confidence 34333 4689999999999876543
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.24 E-value=9.8e-11 Score=113.46 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=83.3
Q ss_pred CccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChH
Q 002605 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN 501 (901)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~ 501 (901)
++|+||++||++.. ++.++|+. + +.. ++.+.| ++.||||||...-
T Consensus 23 ~~D~vv~~GDl~~~-~~~~~~~~-~-~~l-----------------------------~~~~~p-~~~v~GNHD~~~~-- 67 (188)
T cd07392 23 EADAVIVAGDITNF-GGKEAAVE-I-NLL-----------------------------LAIGVP-VLAVPGNCDTPEI-- 67 (188)
T ss_pred CCCEEEECCCccCc-CCHHHHHH-H-HHH-----------------------------HhcCCC-EEEEcCCCCCHHH--
Confidence 58999999998864 33333321 1 111 122334 9999999996332
Q ss_pred HHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEecCC------CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCC
Q 002605 502 TFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLDLAL------HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEP 575 (901)
Q Consensus 502 aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql------~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP 575 (901)
.... . .++..... + .+.++ +|.++|+|+.. .+..+..|.+|+ +.+. ..+++++|+++|+|
T Consensus 68 --~~~~-~----~~~~~~~~-~--~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~--~~~~~~~ilv~H~p 133 (188)
T cd07392 68 --LGLL-T----SAGLNLHG-K--VVEVG-GYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLN--NLLAKNLILVTHAP 133 (188)
T ss_pred --HHhh-h----cCcEecCC-C--EEEEC-CEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhh--ccCCCCeEEEECCC
Confidence 1111 1 11221222 1 23455 48999998742 234567888888 3332 24568999999999
Q ss_pred CCcc--ccccCc--cchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 576 NWLL--DWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 576 ~w~~--d~~~~~--~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
++.. +..... ...+.+.+++++ .+++++|+||+|.-
T Consensus 134 p~~~~~d~~~~~~~~g~~~l~~li~~---~~~~~~l~GH~H~~ 173 (188)
T cd07392 134 PYGTAVDRVSGGFHVGSKAIRKFIEE---RQPLLCICGHIHES 173 (188)
T ss_pred CcCCcccccCCCCccCCHHHHHHHHH---hCCcEEEEeccccc
Confidence 9752 211111 123445566655 48899999999974
No 20
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.21 E-value=3.3e-10 Score=119.92 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=107.5
Q ss_pred CCCeEEEEEeecCCCCCCchH-HHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCC
Q 002605 379 KEDLWFDFMADTGDGGNSSYS-VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPP 457 (901)
Q Consensus 379 d~~~wFd~VaDtGDG~dStYt-VArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~ 457 (901)
.+++.+.+++|+=.|.....+ ..+++.+ + ...++|+|+++||++..+ ..++.+ . +...++
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~----i-------~~~~pDlVli~GD~~d~~-~~~~~~-~----~~~~L~-- 107 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIAL----G-------IEQKPDLILLGGDYVLFD-MPLNFS-A----FSDVLS-- 107 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHH----H-------HhcCCCEEEEccCcCCCC-ccccHH-H----HHHHHH--
Confidence 357999999999876433322 2322221 0 123689999999977521 111111 1 111111
Q ss_pred CCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChH---HHHHHhhcccCCCccccCCCcceEEEECCC-eE
Q 002605 458 PWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN---TFMRFICHKSWLGGWFMPQKKSYFALQLPK-GW 533 (901)
Q Consensus 458 ~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~---aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~-~w 533 (901)
+++. ..| +|+++||||++.+.. .+.+.+. -.|+..-++.+. .++.+. ..
T Consensus 108 --------------------~L~~-~~p-v~~V~GNHD~~~~~~~~~~~~~~l~----~~gi~lL~n~~~-~i~~~~~~i 160 (271)
T PRK11340 108 --------------------PLAE-CAP-TFACFGNHDRPVGTEKNHLIGETLK----SAGITVLFNQAT-VIATPNRQF 160 (271)
T ss_pred --------------------HHhh-cCC-EEEecCCCCcccCccchHHHHHHHH----hcCcEEeeCCeE-EEeeCCcEE
Confidence 1111 235 999999999875432 2222222 135555555443 455433 37
Q ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCC
Q 002605 534 WVFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 534 WLlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHh 613 (901)
+|+|+|+-..+..+.+ +..++++..|+++|+|.... +.-+.+++|.||||+|+
T Consensus 161 ~i~G~~d~~~~~~~~~----------~~~~~~~~~IlL~H~P~~~~-----------------~~~~~~~dL~lsGHTHG 213 (271)
T PRK11340 161 ELVGTGDLWAGQCKPP----------PASEANLPRLVLAHNPDSKE-----------------VMRDEPWDLMLCGHTHG 213 (271)
T ss_pred EEEEecchhccCCChh----------HhcCCCCCeEEEEcCCChhH-----------------hhccCCCCEEEeccccC
Confidence 8999986433222211 11234679999999998632 11234799999999997
Q ss_pred cceeee--------c----CCCCC--cccceEEEecCCCCCCCcccccCC
Q 002605 614 YMRHSY--------V----PSDGP--VYVQHLLVNGCGGAFLHPTHVFSN 649 (901)
Q Consensus 614 YqR~~p--------~----~~~G~--~~~~~lIVsGGGGAfLHPTH~~~~ 649 (901)
=|-.-| . ...|. ....+++||-|-|.. .|.|....
T Consensus 214 GQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~Vs~G~G~~-~p~R~~~~ 262 (271)
T PRK11340 214 GQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIYTTRGVGSL-YGLRLNCR 262 (271)
T ss_pred CeEEccccCccccccccCcccCCcEEeCCcEEEEeCCccCC-cCCcccCC
Confidence 442211 1 11222 123466777777754 57776543
No 21
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.15 E-value=8.3e-10 Score=110.96 Aligned_cols=198 Identities=19% Similarity=0.210 Sum_probs=111.1
Q ss_pred CeEEEEEeecCCCCCCch-HHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCC
Q 002605 381 DLWFDFMADTGDGGNSSY-SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPW 459 (901)
Q Consensus 381 ~~wFd~VaDtGDG~dStY-tVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~ 459 (901)
++.+.+++|+=-+..... ...+++.+-. ..++|+++++||++......+ ..+.+.++.
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~-----------~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~------- 59 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKIN-----------ALKPDLVVLTGDLVDGSVDVL---ELLLELLKK------- 59 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHh-----------ccCCCEEEEcCcccCCcchhh---HHHHHHHhc-------
Confidence 367889999987654321 2333332210 124799999999987654332 112111110
Q ss_pred CcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHH-HHHhhcccCCCccccCCCcceEEEECCC-eEEEEE
Q 002605 460 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTF-MRFICHKSWLGGWFMPQKKSYFALQLPK-GWWVFG 537 (901)
Q Consensus 460 ~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF-~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~-~wWLlG 537 (901)
++. ..| ++++|||||++.+.... .+... + .|+..-.+. +..++... ...+.|
T Consensus 60 -------------------l~~-~~~-v~~v~GNHD~~~~~~~~~~~~l~-~---~~v~~L~~~-~~~~~~~~~~i~i~G 113 (223)
T cd07385 60 -------------------LKA-PLG-VYAVLGNHDYYSGDEENWIEALE-S---AGITVLRNE-SVEISVGGATIGIAG 113 (223)
T ss_pred -------------------cCC-CCC-EEEECCCcccccCchHHHHHHHH-H---cCCEEeecC-cEEeccCCeEEEEEe
Confidence 111 234 99999999998875544 22222 1 234333332 33454433 256777
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCccee
Q 002605 538 LDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 538 LDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~ 617 (901)
++.... +.+.+.+.++ +.++++..|+++|.|.... +..+.++++++|||+|..|..
T Consensus 114 ~~~~~~------~~~~~~~~~~-~~~~~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~ 169 (223)
T cd07385 114 VDDGLG------RRPDLEKALK-GLDEDDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIR 169 (223)
T ss_pred ccCccc------cCCCHHHHHh-CCCCCCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEe
Confidence 653321 2234444443 3566789999999998533 112358999999999987655
Q ss_pred eecCC------------CCC--cccceEEEecCCCCCCCcccccCC
Q 002605 618 SYVPS------------DGP--VYVQHLLVNGCGGAFLHPTHVFSN 649 (901)
Q Consensus 618 ~p~~~------------~G~--~~~~~lIVsGGGGAfLHPTH~~~~ 649 (901)
.+... +|- ....+++||-|-|...-|.|...+
T Consensus 170 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~G~G~~~~~~R~~~~ 215 (223)
T cd07385 170 LPGIGPLVLSKLARPYDYGLYRKGGSQLYVSRGLGTWGPPLRLGCP 215 (223)
T ss_pred ccccccccchhhcCcccceEEEECCEEEEEcCCccCCCCchhcCCC
Confidence 43321 111 113367777777876667666543
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.14 E-value=1.9e-09 Score=123.05 Aligned_cols=126 Identities=12% Similarity=0.153 Sum_probs=85.5
Q ss_pred cceEEEE-CCCeEEEEEEecCC-----CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccC-----ccchhh
Q 002605 522 KSYFALQ-LPKGWWVFGLDLAL-----HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFN-----NVSGKN 590 (901)
Q Consensus 522 ~SYFAlr-LP~~wWLlGLDsql-----~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~-----~~t~d~ 590 (901)
..||+++ .++ |.+|+||++. .+.++..|++||++.|++ .+++++||++|||.|..+.-.. +....+
T Consensus 291 ~~YYSFd~~gg-vrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~--a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n 367 (496)
T TIGR03767 291 TGYYTFDIAGG-VRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA--SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHL 367 (496)
T ss_pred CceEEEEeECC-EEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc--CCCCCEEEEECCCCccccccccccccccccccC
Confidence 4699999 565 9999999975 356899999999999974 4567899999999987543211 111223
Q ss_pred HHHHHhhhhCC-ceeEEEcCccCCcc--eeeecCCCCCcccceEEEecCCCCCCCcccccCCc
Q 002605 591 VKHLICDYLKG-RCKLRIAGDMHHYM--RHSYVPSDGPVYVQHLLVNGCGGAFLHPTHVFSNF 650 (901)
Q Consensus 591 l~~Lie~~l~~-RV~LvLAGHiHhYq--R~~p~~~~G~~~~~~lIVsGGGGAfLHPTH~~~~~ 650 (901)
.++|++-+-++ +|.++|+||+|.-. ++.+.++.+++.+-.=|++++-=-|-||-|.++-.
T Consensus 368 ~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~ 430 (496)
T TIGR03767 368 GTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELA 430 (496)
T ss_pred HHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEE
Confidence 33443333344 79999999999432 22222222233333458888888888888887764
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.01 E-value=1.2e-09 Score=112.94 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccc-------ccCc----cchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 548 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDW-------YFNN----VSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 548 ~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~-------~~~~----~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
..|++|+++.+++ .+++++||+||||+-.... .++. .....+..++++ ++++++++||+|.-.
T Consensus 149 ~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~---~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 149 AIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVK---YEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHH---hCCCEEEECCccCCC
Confidence 5789999999864 3457899999999743211 1111 011344555555 489999999999643
No 24
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.92 E-value=3.7e-08 Score=103.12 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=99.2
Q ss_pred eEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCc
Q 002605 382 LWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461 (901)
Q Consensus 382 ~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~ 461 (901)
..+..++|+=+ ..-.+.++++.- +..++|++|++||++..++..++|..-+ +..
T Consensus 5 ~kIl~iSDiHg---n~~~le~l~~~~-----------~~~~~D~vv~~GDl~~~g~~~~~~~~~l-~~l----------- 58 (224)
T cd07388 5 RYVLATSNPKG---DLEALEKLVGLA-----------PETGADAIVLIGNLLPKAAKSEDYAAFF-RIL----------- 58 (224)
T ss_pred eEEEEEEecCC---CHHHHHHHHHHH-----------hhcCCCEEEECCCCCCCCCCHHHHHHHH-HHH-----------
Confidence 45778888853 222333433311 0135799999999999865555554311 211
Q ss_pred ccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHH-Hhhcc-cCCCccccCCCcceEEEECCCeEEEEEEe
Q 002605 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMR-FICHK-SWLGGWFMPQKKSYFALQLPKGWWVFGLD 539 (901)
Q Consensus 462 ~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R-~Fc~r-~~lgGW~mpQ~~SYFAlrLP~~wWLlGLD 539 (901)
++...| +++||||||- .+..+++ .+... ..........+ .++...+..|+|+|
T Consensus 59 ------------------~~l~~p-v~~V~GNhD~--~v~~~l~~~~~~~~~~p~~~~lh~~----~~~~~g~~~~~GlG 113 (224)
T cd07388 59 ------------------GEAHLP-TFYVPGPQDA--PLWEYLREAYNAELVHPEIRNVHET----FAFWRGPYLVAGVG 113 (224)
T ss_pred ------------------HhcCCc-eEEEcCCCCh--HHHHHHHHHhcccccCccceecCCC----eEEecCCeEEEEec
Confidence 122234 9999999995 2444443 22110 00112333332 24444447899998
Q ss_pred cCCCC--CCCHHHH----HHHHH----HHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcC
Q 002605 540 LALHC--DIDVYQF----KFFAE----LVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAG 609 (901)
Q Consensus 540 sql~g--dID~~Q~----~wF~~----ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAG 609 (901)
-.+.. ..+..|. +|+.+ .+.+ . ..++.||++|+|++-.+..| ...+.++.+|+++ +.++.++|
T Consensus 114 Gs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~-~-~~~~~VLv~H~PP~g~g~~h--~GS~alr~~I~~~---~P~l~i~G 186 (224)
T cd07388 114 GEIADEGEPEEHEALRYPAWVAEYRLKALWE-L-KDYRKVFLFHTPPYHKGLNE--QGSHEVAHLIKTH---NPLVVLVG 186 (224)
T ss_pred CCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh-C-CCCCeEEEECCCCCCCCCCc--cCHHHHHHHHHHh---CCCEEEEc
Confidence 54422 3344552 44333 3322 2 46799999999999774322 2345677777774 88999999
Q ss_pred ccCC
Q 002605 610 DMHH 613 (901)
Q Consensus 610 HiHh 613 (901)
|+||
T Consensus 187 Hih~ 190 (224)
T cd07388 187 GKGQ 190 (224)
T ss_pred CCce
Confidence 9994
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.84 E-value=1.1e-08 Score=96.80 Aligned_cols=49 Identities=12% Similarity=-0.007 Sum_probs=31.1
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceee
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~ 618 (901)
|+++|||.+.......... .+.+.+.+-+.+.+++++++||+|......
T Consensus 81 iv~~Hhp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 81 IVVLHHPLVPPPGSGRERL-LDAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred EEEecCCCCCCCccccccC-CCHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 9999999987643322111 123333333335699999999999865554
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.72 E-value=6e-08 Score=94.32 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=31.0
Q ss_pred CeEEEEecCCCCccccccCcc-chhh--HHHHHhhhh-CCceeEEEcCccCCccee
Q 002605 566 DSVIIMTHEPNWLLDWYFNNV-SGKN--VKHLICDYL-KGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 566 d~VIL~tHeP~w~~d~~~~~~-t~d~--l~~Lie~~l-~~RV~LvLAGHiHhYqR~ 617 (901)
+++||++|||+...+...... ...+ ....+.+.+ +.+|+++++||+|.....
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 699999999998764322111 1111 111112222 468999999999975433
No 27
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.69 E-value=8.5e-08 Score=85.32 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=32.7
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeee
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSY 619 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p 619 (901)
|+++|.|.+................+.+.....++++.++||+|.+++...
T Consensus 70 i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~ 120 (131)
T cd00838 70 ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREP 120 (131)
T ss_pred EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccC
Confidence 999999999875543221110111221222356899999999999988763
No 28
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.65 E-value=7.7e-08 Score=103.88 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=76.2
Q ss_pred EEEeCCCCCCCCChHHHH-HHhhccc--CC--CccccCCCc-ceEEEECCCeEEEEEEecCCCCCCCHHHHHH---HHHH
Q 002605 487 CYIIPGNHDWFDGLNTFM-RFICHKS--WL--GGWFMPQKK-SYFALQLPKGWWVFGLDLALHCDIDVYQFKF---FAEL 557 (901)
Q Consensus 487 vfAIPGNHDWYDGL~aF~-R~Fc~r~--~l--gGW~mpQ~~-SYFAlrLP~~wWLlGLDsql~gdID~~Q~~w---F~~l 557 (901)
+|||.|||||+....... ..+.... .. .+....+.. .++ -....+-|..++|.+..... ..+.++ .++.
T Consensus 108 v~av~GNHd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~ 185 (284)
T COG1408 108 VFAVLGNHDYGVDRSNVYIGDLLEELGRVVLRNEIAVIDLLALRI-EVGGLDLYLAGVEDILAGLP-LAPFTIGLDIAEA 185 (284)
T ss_pred EEEEecccccccccccchhhhhhhhcceeeecccchhcccccccc-cccccccccccCchHHhhCc-ccccccccchhhh
Confidence 999999999998866532 2221111 00 001111111 010 11122245666655543322 000000 2222
Q ss_pred HHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCC------------CCC
Q 002605 558 VKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPS------------DGP 625 (901)
Q Consensus 558 l~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~------------~G~ 625 (901)
+ ++.+++.+.|+++|+|.... ++-.+.++|+||||+|.=|=..|..+ .|.
T Consensus 186 ~-~~~~~~~~~IlL~H~P~~~~-----------------~~~~~~~dLvLSGHTHGGQi~~p~~~~l~~~~~~~~~~~g~ 247 (284)
T COG1408 186 L-KQLDEDLPGILLSHEPDIIL-----------------QLRLYGVDLVLSGHTHGGQIRLPLWGPLVTNALSGRYRAGG 247 (284)
T ss_pred h-ccccccccceEeccCCceeh-----------------hhccCcceEEEeccccCCeEEeecccccccccccccccccc
Confidence 3 35677889999999999754 22234799999999997333322110 111
Q ss_pred --cccceEEEecCCCCCCCcccccCC
Q 002605 626 --VYVQHLLVNGCGGAFLHPTHVFSN 649 (901)
Q Consensus 626 --~~~~~lIVsGGGGAfLHPTH~~~~ 649 (901)
+-..+++||.|-|..--|.|...+
T Consensus 248 ~~~~~~~lyVSrGlG~~~~p~R~~~~ 273 (284)
T COG1408 248 LRQFGAQLYVSRGLGTTGPPIRLGCP 273 (284)
T ss_pred eecCCceEEEeCCcCCCCCCcccCCC
Confidence 112368999999987677777654
No 29
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.64 E-value=2.3e-07 Score=105.80 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=56.6
Q ss_pred eEEEECCCeE--EEEEEecCC-----------CCCCCHHHHHHHHHHHHhhcC-CCCeEEEEecCCCCcc-cccc---C-
Q 002605 524 YFALQLPKGW--WVFGLDLAL-----------HCDIDVYQFKFFAELVKEQVG-ERDSVIIMTHEPNWLL-DWYF---N- 584 (901)
Q Consensus 524 YFAlrLP~~w--WLlGLDsql-----------~gdID~~Q~~wF~~ll~~~v~-~~d~VIL~tHeP~w~~-d~~~---~- 584 (901)
||+++.-.+| .+|+||+-. ++.+|..|++||++.|++ .+ .+..||++.|+|..+. .... .
T Consensus 294 yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~-a~a~~p~VVV~hHpPi~t~gi~~md~w~~ 372 (492)
T TIGR03768 294 CYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELAR-GQADGQLMIIAAHIPIAVSPIGSEMEWWL 372 (492)
T ss_pred eeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHh-CcCCCceEEEEeCCCcccCCccchhhhcc
Confidence 9999953335 999999763 345899999999999974 44 4456777788887752 2111 0
Q ss_pred -----c---cc---hhhHHHHHhhhhCCceeEEEcCccC
Q 002605 585 -----N---VS---GKNVKHLICDYLKGRCKLRIAGDMH 612 (901)
Q Consensus 585 -----~---~t---~d~l~~Lie~~l~~RV~LvLAGHiH 612 (901)
. +. ++.+..+++++ .+|.++||||+|
T Consensus 373 ~~~~~~~~L~n~~~~~eLlaLL~~h--PnVla~LsGHvH 409 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGLVTTLQKY--PNLLMWIAGHRH 409 (492)
T ss_pred ccccccccccccccHHHHHHHHhcC--CCeEEEEcCCcc
Confidence 0 01 11233333332 379999999999
No 30
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.61 E-value=9.6e-08 Score=95.35 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=64.2
Q ss_pred CcEEEeCCCCCCCCChHHHHHHhhcccCCCccccC----CCcceEEEEC-CCeEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 002605 485 PQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMP----QKKSYFALQL-PKGWWVFGLDLALHCDIDVYQFKFFAELVK 559 (901)
Q Consensus 485 P~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mp----Q~~SYFAlrL-P~~wWLlGLDsql~gdID~~Q~~wF~~ll~ 559 (901)
.++++++||||.+.+......... ..++... .......... ..+..|+|++....... ..+.++.++...
T Consensus 77 ~~v~~~~GNHD~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~-~~~~~~~~~~~~ 151 (223)
T cd00840 77 IPVFIIAGNHDSPSRLGALSPLLA----LSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRL-RDLLADAELRPR 151 (223)
T ss_pred CCEEEecCCCCCccccccccchHh----hCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHH-HHHHHHHHHHhh
Confidence 349999999999877544332211 1122210 0111122222 23477888875432211 122233233332
Q ss_pred hhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCccee
Q 002605 560 EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 560 ~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~ 617 (901)
+..+++..|+++|.|.......... . .....+.+...+++++++||+|..+..
T Consensus 152 -~~~~~~~~Il~~H~~~~~~~~~~~~-~---~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 152 -PLDPDDFNILLLHGGVAGAGPSDSE-R---APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred -ccCCCCcEEEEEeeeeecCCCCccc-c---cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3566789999999997544211111 0 011112333568999999999986543
No 31
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.48 E-value=5.1e-07 Score=85.53 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCeEEEEecCCCCccccccCc---cchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 565 RDSVIIMTHEPNWLLDWYFNN---VSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~---~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
+++.|+++|.|++....+... ...+.+..++++ .++++.++||+|..
T Consensus 67 ~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~i~GH~H~~ 116 (135)
T cd07379 67 EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQR---VRPKLHVFGHIHEG 116 (135)
T ss_pred CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHH---HCCcEEEEcCcCCc
Confidence 467899999999876443211 112334444444 47899999999975
No 32
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.08 E-value=1e-05 Score=81.06 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecC
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~ 621 (901)
|+++|+|.+. +++ +.+++++||||+|.+.+.....
T Consensus 119 i~l~H~p~~~---------------~~~---~~~~~~~lsGH~H~~~~~~~~~ 153 (171)
T cd07384 119 ILLTHIPLYR---------------LLD---TIKPVLILSGHDHDQCEVVHSS 153 (171)
T ss_pred eeEECCccHH---------------HHh---ccCceEEEeCcccCCeEEEecC
Confidence 9999999862 112 2478999999999987776553
No 33
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.08 E-value=1.1e-05 Score=83.43 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=30.2
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeec
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~ 620 (901)
|+++|-|.+.... +-..+.+. +.++++.+|||.|.+..++..
T Consensus 112 i~lsH~P~~~~~~-------~~~~~~~~---~~~p~~Ifs~H~H~s~~~~~~ 153 (195)
T cd08166 112 IMLSHVPLLAEGG-------QALKHVVT---DLDPDLIFSAHRHKSSIFMYD 153 (195)
T ss_pred eeeeccccccccc-------HHHHHHHH---hcCceEEEEcCccceeeEEee
Confidence 9999999987532 22233333 458999999999998877644
No 34
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=97.96 E-value=4.9e-05 Score=86.18 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=46.8
Q ss_pred CcceEEEECCCeEEEEEEecCCCCC---------------------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 002605 521 KKSYFALQLPKGWWVFGLDLALHCD---------------------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (901)
Q Consensus 521 ~~SYFAlrLP~~wWLlGLDsql~gd---------------------ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~ 579 (901)
.+.|+.++.++..-|+.||+-..-+ +...|++||++.+++ ....++|+++.-|.=..
T Consensus 252 ~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~--s~a~~kvi~s~v~~~~~ 329 (453)
T PF09423_consen 252 GRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS--SQATWKVIGSSVPFSPL 329 (453)
T ss_dssp ----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH----SSEEEEE-SS--S--
T ss_pred CceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc--CCCcEEEEEeCCceecc
Confidence 3469999999877899999964211 345899999999874 33679999887765322
Q ss_pred ccc------------cCccchhhHHHHHhhhhCCce--eEEEcCccCC
Q 002605 580 DWY------------FNNVSGKNVKHLICDYLKGRC--KLRIAGDMHH 613 (901)
Q Consensus 580 d~~------------~~~~t~d~l~~Lie~~l~~RV--~LvLAGHiHh 613 (901)
... +++.. ...+.|++.+-..++ -++||||+|.
T Consensus 330 ~~~~~~~~~~~~~d~W~g~~-~er~~Ll~~l~~~~~~~vV~LSGDvH~ 376 (453)
T PF09423_consen 330 NFPDAAEGLPFNMDSWDGYP-AERQRLLDFLRESGIRNVVFLSGDVHA 376 (453)
T ss_dssp -SS-SS-S--EETTSGGGSH-HHHHHHHHHHHHTT---EEEEE-SSSS
T ss_pred cccccccccccCCCchhhCH-HHHHHHHHHHHhhCCCCEEEEecCcch
Confidence 111 11111 122333333322344 4899999996
No 35
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.74 E-value=5.6e-05 Score=78.23 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=24.4
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceee
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~ 618 (901)
|+++|+|.+.. ..+.+++++||||+|.=++..
T Consensus 129 ilL~H~P~~~~------------------~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYKI------------------FLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEcccceec------------------cccCCCCEEEeCccCCCeEEE
Confidence 99999998751 013478999999999866654
No 36
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.72 E-value=8.1e-05 Score=73.59 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.0
Q ss_pred EEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeec
Q 002605 569 IIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (901)
Q Consensus 569 IL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~ 620 (901)
|++.|+|... .+.+ .++++.||||+|...+....
T Consensus 107 ~~l~H~p~~~---------------~~~~---~~~~~~l~GH~H~~~~~~~~ 140 (156)
T cd08165 107 ILLQHFPLYR---------------LLQW---LKPRLVLSGHTHSFCEVTHP 140 (156)
T ss_pred eeeeCChHHH---------------HHHh---hCCCEEEEcccCCCceeEEE
Confidence 8999999732 1123 36779999999986666544
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.58 E-value=0.0011 Score=70.83 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=36.2
Q ss_pred hcCCCCeEEEEecCCCCccccccCc-----------c-chhhHHHHHhhhh-CCceeEEEcCccCCcceee
Q 002605 561 QVGERDSVIIMTHEPNWLLDWYFNN-----------V-SGKNVKHLICDYL-KGRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 561 ~v~~~d~VIL~tHeP~w~~d~~~~~-----------~-t~d~l~~Lie~~l-~~RV~LvLAGHiHhYqR~~ 618 (901)
.++++++.|+++|.|.--.+...++ . ....+..-+.++- +.++++++.||+||=-|+.
T Consensus 142 ~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~ 212 (238)
T cd07397 142 KAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRG 212 (238)
T ss_pred hcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccc
Confidence 4577889999999998665321111 1 1123333344432 4568999999999965554
No 38
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.56 E-value=0.00025 Score=67.94 Aligned_cols=49 Identities=22% Similarity=0.066 Sum_probs=28.4
Q ss_pred eEEEEecCCCCccccccCc--cchhhHHHHHhhhhCCceeEEEcCccCCcceee
Q 002605 567 SVIIMTHEPNWLLDWYFNN--VSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 567 ~VIL~tHeP~w~~d~~~~~--~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~ 618 (901)
..|+++|+|.+-....... ...+.+..+++ +.+++++|+||+|......
T Consensus 57 ~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~---~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 57 VDILLTHAPPAGIGDGEDFAHRGFEAFLDFID---RFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred cCEEEECCCCCcCcCcccccccCHHHHHHHHH---HHCCcEEEEcCcCCCcCcc
Confidence 5689999998744321110 11222223333 3479999999999644433
No 39
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.50 E-value=0.0019 Score=68.45 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=69.4
Q ss_pred EEEeCCCCCCCCChHHHHHHhhccc--CCC-cc------c-cCCCcceEEEECCCe-EEEEEEecCCCC--------C--
Q 002605 487 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GW------F-MPQKKSYFALQLPKG-WWVFGLDLALHC--------D-- 545 (901)
Q Consensus 487 vfAIPGNHDWYDGL~aF~R~Fc~r~--~lg-GW------~-mpQ~~SYFAlrLP~~-wWLlGLDsql~g--------d-- 545 (901)
-++++||||+.-|.+.+.+.+.+-. +++ .. . .++-.+|-.++...- .=++|+.+.... .
T Consensus 73 d~~~~GNHefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~ 152 (257)
T cd07406 73 DLACFGNHEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVR 152 (257)
T ss_pred cEEeecccccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcce
Confidence 4668999999778887777653221 221 11 1 112235766766431 335666543211 0
Q ss_pred -CCHHHHHHHHHHHH-hhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCC
Q 002605 546 -IDVYQFKFFAELVK-EQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSD 623 (901)
Q Consensus 546 -ID~~Q~~wF~~ll~-~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~ 623 (901)
.|. .+-+++.++ .+.+.-|-||+++|-|.... ..+.+++ ..++++|+||.|..+... . .
T Consensus 153 ~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d------------~~la~~~--~~iD~IlgGH~H~~~~~~--~-~ 213 (257)
T cd07406 153 YRDY--VETARELVDELREQGADLIIALTHMRLPND------------KRLAREV--PEIDLILGGHDHEYILVQ--V-G 213 (257)
T ss_pred EcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchhh------------HHHHHhC--CCCceEEecccceeEeee--E-C
Confidence 122 122222221 11234589999999986211 2233443 469999999999865211 1 1
Q ss_pred CCcccceEEEecCCCCCCC
Q 002605 624 GPVYVQHLLVNGCGGAFLH 642 (901)
Q Consensus 624 G~~~~~~lIVsGGGGAfLH 642 (901)
...++-+|+.|.++-
T Consensus 214 ----~t~vv~~g~~g~~vg 228 (257)
T cd07406 214 ----GTPIVKSGSDFRTVY 228 (257)
T ss_pred ----CEEEEeCCcCcceEE
Confidence 224455566665443
No 40
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.42 E-value=0.0038 Score=66.30 Aligned_cols=177 Identities=21% Similarity=0.266 Sum_probs=90.0
Q ss_pred CeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcC-CChhhhhhccccchhhhcCCCCC
Q 002605 381 DLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN-PSAFTYERRLFRPFEYALQPPPW 459 (901)
Q Consensus 381 ~~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~-gs~e~Y~~Rfv~PYe~Al~~~~~ 459 (901)
.+.+.+++|.=...++.-++....+. -++|+++++||++|-. +..+.-.+.. . .++
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~--------------~~~D~lviaGDlt~~~~~~~~~~~~~~-~-~e~------- 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAAD--------------IRADLLVIAGDLTYFHFGPKEVAEELN-K-LEA------- 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhh--------------ccCCEEEEecceehhhcCchHHHHhhh-H-HHH-------
Confidence 45677788885544443333332221 1589999999999332 2211111111 0 111
Q ss_pred CcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccccCCCcceEEEECCCeEEEEEEe
Q 002605 460 YKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWFMPQKKSYFALQLPKGWWVFGLD 539 (901)
Q Consensus 460 ~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~mpQ~~SYFAlrLP~~wWLlGLD 539 (901)
++....| ++|+|||=|- ..-.+.+.. .|-.+..+ ++++.. .-+.|+.
T Consensus 60 -------------------l~~~~~~-v~avpGNcD~----~~v~~~l~~----~~~~v~~~----v~~i~~-~~~~G~G 106 (226)
T COG2129 60 -------------------LKELGIP-VLAVPGNCDP----PEVIDVLKN----AGVNVHGR----VVEIGG-YGFVGFG 106 (226)
T ss_pred -------------------HHhcCCe-EEEEcCCCCh----HHHHHHHHh----cccccccc----eEEecC-cEEEEec
Confidence 2232345 9999999653 111111111 11222222 456654 3455532
Q ss_pred -cCCCC-----CC-CHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcccccc-C---ccchhhHHHHHhhhhCCceeEEEc
Q 002605 540 -LALHC-----DI-DVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYF-N---NVSGKNVKHLICDYLKGRCKLRIA 608 (901)
Q Consensus 540 -sql~g-----dI-D~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~-~---~~t~d~l~~Lie~~l~~RV~LvLA 608 (901)
++... .. +..=+..+++.+++.. +...|+.+|.|++....-. . ......++.++++. ++.+.++
T Consensus 107 gsn~tp~nt~~e~~E~~I~s~l~~~v~~~~--~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieef---qP~l~i~ 181 (226)
T COG2129 107 GSNPTPFNTPREFSEDEIYSKLKSLVKKAD--NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEF---QPLLGLH 181 (226)
T ss_pred ccCCCCCCCccccCHHHHHHHHHHHHhccc--CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHh---CCceEEE
Confidence 22211 12 2233455555554311 1122999999999653221 1 11235677787885 7889999
Q ss_pred CccCCcceee
Q 002605 609 GDMHHYMRHS 618 (901)
Q Consensus 609 GHiHhYqR~~ 618 (901)
||+|-++-..
T Consensus 182 GHIHEs~G~d 191 (226)
T COG2129 182 GHIHESRGID 191 (226)
T ss_pred eeeccccccc
Confidence 9999744443
No 41
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.38 E-value=0.0063 Score=63.23 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=61.6
Q ss_pred EEEeCCCCCCCCChHHHHHHhhccc--CCC-ccc-------cCCCcceEEEECCC-eEEEEEEecCCCCCC---------
Q 002605 487 CYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF-------MPQKKSYFALQLPK-GWWVFGLDLALHCDI--------- 546 (901)
Q Consensus 487 vfAIPGNHDWYDGL~aF~R~Fc~r~--~lg-GW~-------mpQ~~SYFAlrLP~-~wWLlGLDsql~gdI--------- 546 (901)
-++++||||+.-|.+.+...+-+-. +++ +.. .+.-..|-.++.+. ..-++|+.+......
T Consensus 72 d~~~~GNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~ 151 (252)
T cd00845 72 DAVTIGNHEFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGL 151 (252)
T ss_pred CEEeeccccccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCc
Confidence 4456799998767776655543211 111 110 11112354555542 255777765432111
Q ss_pred C-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCccee
Q 002605 547 D-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 547 D-~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~ 617 (901)
+ ....+-+++..++..++.|-||+++|-|.-.. ..+.++. ..++++|+||.|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~D~vIvl~H~g~~~~------------~~la~~~--~giDlvlggH~H~~~~~ 209 (252)
T cd00845 152 PFEDLAEAVAVAEELLAEGADVIILLSHLGLDDD------------EELAEEV--PGIDVILGGHTHHLLEE 209 (252)
T ss_pred eecCHHHHHHHHHHHHhCCCCEEEEEeccCccch------------HHHHhcC--CCccEEEcCCcCcccCC
Confidence 0 11122233222233456789999999887421 2222332 57999999999986653
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.30 E-value=0.00092 Score=64.31 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=33.2
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCC
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGA 639 (901)
++..|+++|-|.+.... ..+. ..+.+ ..+++++++||+|...... .. ...+|-.|.-|.
T Consensus 74 ~g~~i~v~Hg~~~~~~~-----~~~~-~~~~~---~~~~d~vi~GHtH~~~~~~-~~------~~~~inpGs~~~ 132 (155)
T cd00841 74 GGKRIFLTHGHLYGVKN-----GLDR-LYLAK---EGGADVVLYGHTHIPVIEK-IG------GVLLLNPGSLSL 132 (155)
T ss_pred CCEEEEEECCccccccc-----chhh-hhhhh---hcCCCEEEECcccCCccEE-EC------CEEEEeCCCccC
Confidence 35678899988764421 1111 12212 3478999999999643322 11 224566666553
No 43
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.27 E-value=0.002 Score=67.41 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.1
Q ss_pred CCceeEEEcCccCCccee
Q 002605 600 KGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~ 617 (901)
++++++++.||+|.-..+
T Consensus 185 ~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 185 KHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HhCCCEEEECcccCccee
Confidence 358999999999975444
No 44
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.27 E-value=0.00068 Score=64.07 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCC
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGA 639 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGA 639 (901)
+...|+++|.+.+.... ..+.+...+. ..+++++++||+|..+..... ...++..|+-+.
T Consensus 80 ~~~~i~~~H~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~GH~H~~~~~~~~-------~~~~~~~Gs~~~ 139 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQW-----DPAELREILS---RENVDLVLHGHTHRPQVFKIG-------GIHVINPGSIGG 139 (156)
T ss_dssp TTEEEEEESSTSSSSTT-----THHHHHHHHH---HTTSSEEEESSSSSEEEEEET-------TEEEEEE-GSSS
T ss_pred cCCeEEEECCCCccccc-----Chhhhhhhhc---ccCCCEEEcCCcccceEEEEC-------CEEEEECCcCCC
Confidence 47889999988875421 1122222222 468999999999986554411 236677776554
No 45
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.22 E-value=0.0013 Score=70.24 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=75.8
Q ss_pred CccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCC----------CC-cccccCCCCcEEEe
Q 002605 422 RGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPS----------GV-PELKQYDGPQCYII 490 (901)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~----------~~-~~l~~~~gP~vfAI 490 (901)
++|.|++.||+.=+.+...+|++--.+-=+ | +|++.-+ .. ..|.+ -+++++.|
T Consensus 32 ~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~----------p-----~k~~i~~e~~~~~e~~~~ff~~L~~-~~~p~~~v 95 (255)
T PF14582_consen 32 GPDAVVFVGDLLKAEARSDEYERAQEEQRE----------P-----DKSEINEEECYDSEALDKFFRILGE-LGVPVFVV 95 (255)
T ss_dssp T-SEEEEES-SS-TCHHHHHHHHHHHTT-------------------THHHHHHHHHHHHHHHHHHHHHHC-C-SEEEEE
T ss_pred CCCEEEEeccccccchhhhHHHHHhhhccC----------c-----chhhhhhhhhhhHHHHHHHHHHHHh-cCCcEEEe
Confidence 589999999998887777778721000000 0 1111000 00 01223 34669999
Q ss_pred CCCCCCCCChHHHHHHhhcccC-CCccccCCCcceEEEECCCeEEEEEEecCCCCC--CC--H-----HHHHHHHHHHHh
Q 002605 491 PGNHDWFDGLNTFMRFICHKSW-LGGWFMPQKKSYFALQLPKGWWVFGLDLALHCD--ID--V-----YQFKFFAELVKE 560 (901)
Q Consensus 491 PGNHDWYDGL~aF~R~Fc~r~~-lgGW~mpQ~~SYFAlrLP~~wWLlGLDsql~gd--ID--~-----~Q~~wF~~ll~~ 560 (901)
|||||=+ +..|+|.--.... ....++-++ |+|-.+-+ +=++|+.-....+ .+ . .-.+|-.+.+++
T Consensus 96 PG~~Dap--~~~~lr~a~~~e~v~p~~~~vH~-sf~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e 170 (255)
T PF14582_consen 96 PGNMDAP--ERFFLREAYNAEIVTPHIHNVHE-SFFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE 170 (255)
T ss_dssp --TTS-S--HHHHHHHHHHCCCC-TTEEE-CT-CEEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG
T ss_pred cCCCCch--HHHHHHHHhccceeccceeeeee-eecccCCc--EEEEecCccccCCCccccccccchHHHHHHHHHHHHh
Confidence 9999953 2246655333111 122333344 34333222 4578875432211 11 0 123344444433
Q ss_pred hcCCCCeEEEEecCCC-CccccccCccchhhHHHHHhhhhCCceeEEEcCccCC
Q 002605 561 QVGERDSVIIMTHEPN-WLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 561 ~v~~~d~VIL~tHeP~-w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHh 613 (901)
+. +.+.|++.|-|+ .-.+..+ ...+.+++||+++ +.+++|+||+|-
T Consensus 171 -lk-~~r~IlLfhtpPd~~kg~~h--~GS~~V~dlIk~~---~P~ivl~Ghihe 217 (255)
T PF14582_consen 171 -LK-DYRKILLFHTPPDLHKGLIH--VGSAAVRDLIKTY---NPDIVLCGHIHE 217 (255)
T ss_dssp -CT-SSEEEEEESS-BTBCTCTBT--TSBHHHHHHHHHH-----SEEEE-SSS-
T ss_pred -cc-cccEEEEEecCCccCCCccc--ccHHHHHHHHHhc---CCcEEEeccccc
Confidence 33 458999999999 2222111 1236678898886 889999999995
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.16 E-value=0.0041 Score=64.75 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=21.0
Q ss_pred CCceeEEEcCccCCcceeeecCCCCCcccceEEEecC
Q 002605 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGG 636 (901)
+.+++++++||+|.=+.+.-.. .|. ...++|.|.
T Consensus 183 ~~~~~~~i~GHtH~~~~~~~~~-~~~--~~~~~~lgd 216 (231)
T TIGR01854 183 RYGVDRLIHGHTHRPAIHPLQA-DGQ--PATRIVLGD 216 (231)
T ss_pred HcCCCEEEECCccCcceeeccc-CCC--ccEEEEECC
Confidence 3589999999999655443221 111 235777765
No 47
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.05 E-value=0.0026 Score=65.12 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=19.9
Q ss_pred CCcceEEEECCCeEEEEEEecCCCC
Q 002605 520 QKKSYFALQLPKGWWVFGLDLALHC 544 (901)
Q Consensus 520 Q~~SYFAlrLP~~wWLlGLDsql~g 544 (901)
+..-|+.++++....|+.||+...-
T Consensus 145 ~~~~y~~~~~G~~~~~~~lD~R~~R 169 (228)
T cd07389 145 RGGIYRSFRFGDLVDLILLDTRTYR 169 (228)
T ss_pred CceEEEEEecCCcceEEEEeccccc
Confidence 3457999999987689999987654
No 48
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.04 E-value=0.0091 Score=63.42 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=58.9
Q ss_pred EeCCCCCCCCChHHHHHHhhccc--CCC------ccccCCCcceEEEECCC-eEEEEEEecCCCCCCC----------HH
Q 002605 489 IIPGNHDWFDGLNTFMRFICHKS--WLG------GWFMPQKKSYFALQLPK-GWWVFGLDLALHCDID----------VY 549 (901)
Q Consensus 489 AIPGNHDWYDGL~aF~R~Fc~r~--~lg------GW~mpQ~~SYFAlrLP~-~wWLlGLDsql~gdID----------~~ 549 (901)
++-||||+.-|.+.+.+.+-+-. ++. +...|.-.+|..++... ..=++|+.+....... ..
T Consensus 87 a~~GNHefd~g~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T cd07411 87 AMVGHWEFTYGPERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI 166 (264)
T ss_pred EEecccccccCHHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC
Confidence 33399997768777766543211 111 01112222465555533 2557777654221110 11
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 550 QFKFFAELVKE--QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 550 Q~~wF~~ll~~--~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
..+.+.+.+.+ +.+..|-||+++|-+.-. + ..+.++. ..++++|+||.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~----------~--~~la~~~--~~iDlilgGH~H~~ 219 (264)
T cd07411 167 REEELQEVVVKLRREEGVDVVVLLSHNGLPV----------D--VELAERV--PGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCchh----------h--HHHHhcC--CCCcEEEeCccccc
Confidence 23444444221 124568999999987521 0 2333342 46999999999964
No 49
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=97.03 E-value=0.019 Score=64.34 Aligned_cols=194 Identities=21% Similarity=0.178 Sum_probs=102.3
Q ss_pred CCCCCeEEEEEeecCCCCC--------CchH------------HHHHhcccccccccCCCCccccCccEEEEcccccCcC
Q 002605 377 SEKEDLWFDFMADTGDGGN--------SSYS------------VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPN 436 (901)
Q Consensus 377 ~~d~~~wFd~VaDtGDG~d--------StYt------------VArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~ 436 (901)
.+++++.+..++|+==|+. ..++ |.+.+| ..+||+||++||+++-.
T Consensus 49 ~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~--------------sE~PDlVVfTGD~i~g~ 114 (379)
T KOG1432|consen 49 REDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLA--------------SEKPDLVVFTGDNIFGH 114 (379)
T ss_pred cCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHh--------------ccCCCEEEEeCCccccc
Confidence 5678889999999754433 1122 222222 23689999999999973
Q ss_pred CChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCChH--HHHHHhhccc---
Q 002605 437 PSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLN--TFMRFICHKS--- 511 (901)
Q Consensus 437 gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL~--aF~R~Fc~r~--- 511 (901)
+..++++-+..-...+ -+ .+.++-++.||||=-..+. ..+.++..-.
T Consensus 115 -~t~Da~~sl~kAvaP~--------------------------I~-~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~ 166 (379)
T KOG1432|consen 115 -STQDAATSLMKAVAPA--------------------------ID-RKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSL 166 (379)
T ss_pred -ccHhHHHHHHHHhhhH--------------------------hh-cCCCeEEEecccccccccCHHHHHHHHhcCCCcc
Confidence 3344554442222211 22 3345999999999654433 1222221111
Q ss_pred ----CCCccccCCC--cceEEEECC----------CeEEEEEEecCCC----------CCCCHHHHHHHHHHHHh----h
Q 002605 512 ----WLGGWFMPQK--KSYFALQLP----------KGWWVFGLDLALH----------CDIDVYQFKFFAELVKE----Q 561 (901)
Q Consensus 512 ----~lgGW~mpQ~--~SYFAlrLP----------~~wWLlGLDsql~----------gdID~~Q~~wF~~ll~~----~ 561 (901)
...|+-..+. ..| -++++ ...=+..||+... +.|...|.+|+++.-.+ .
T Consensus 167 ~~v~p~dg~~~~~~g~gny-n~~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~ 245 (379)
T KOG1432|consen 167 SQVNPPDGHMYIIDGFGNY-NLQIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPN 245 (379)
T ss_pred ccCCCcccceeeeecccce-EEEeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhccc
Confidence 0123322121 233 34432 1234677777532 23567899999997621 1
Q ss_pred cCCCC-eEEEEecCCCCccccccC--------cc--c-hhhHHHHHhhhh-CCceeEEEcCccCC
Q 002605 562 VGERD-SVIIMTHEPNWLLDWYFN--------NV--S-GKNVKHLICDYL-KGRCKLRIAGDMHH 613 (901)
Q Consensus 562 v~~~d-~VIL~tHeP~w~~d~~~~--------~~--t-~d~l~~Lie~~l-~~RV~LvLAGHiHh 613 (901)
...++ +=+..-|-|.=..-.... .+ . .......++.+. +.+|+.+++||.|.
T Consensus 246 ~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHv 310 (379)
T KOG1432|consen 246 SKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHV 310 (379)
T ss_pred CccCCCCceEEEEcccHHHhhccCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccc
Confidence 12233 667777877632211111 00 0 011112233333 57899999999996
No 50
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=97.02 E-value=0.0027 Score=61.92 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.9
Q ss_pred CCceeEEEcCccCC
Q 002605 600 KGRCKLRIAGDMHH 613 (901)
Q Consensus 600 ~~RV~LvLAGHiHh 613 (901)
..+++++++||+|.
T Consensus 104 ~~~~d~vi~GHtH~ 117 (158)
T TIGR00040 104 ELGVDVLIFGHTHI 117 (158)
T ss_pred ccCCCEEEECCCCC
Confidence 35789999999995
No 51
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.01 E-value=0.014 Score=62.19 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=62.2
Q ss_pred EEeCCCCCCCCChHHHHHHhhccc--CC-Cccc-----cCCCcceEEEECC--CeEEEEEEecCCCC---------C---
Q 002605 488 YIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLP--KGWWVFGLDLALHC---------D--- 545 (901)
Q Consensus 488 fAIPGNHDWYDGL~aF~R~Fc~r~--~l-gGW~-----mpQ~~SYFAlrLP--~~wWLlGLDsql~g---------d--- 545 (901)
++.+||||+.-|.+.+.+..-+-. ++ .... .|.-.+|..++.+ -..=++|+=+.... +
T Consensus 86 ~~~lGNHe~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~ 165 (277)
T cd07410 86 AGTLGNHEFNYGLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKF 165 (277)
T ss_pred EEeecccCcccCHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEE
Confidence 556799997667776666543211 11 1111 1222357677776 22345555322110 1
Q ss_pred CCHH-HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccc-hhhHHHHHhhhhCCceeEEEcCccCCcce
Q 002605 546 IDVY-QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (901)
Q Consensus 546 ID~~-Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t-~d~l~~Lie~~l~~RV~LvLAGHiHhYqR 616 (901)
.|.. ..+...+.+++ +.-|-||+++|-+.-.... .... ......+.+++ ..++++|+||.|....
T Consensus 166 ~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~--~~~~~~~~~~~la~~~--~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 166 TDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE--ESLTGENAAYELAEEV--PGIDAILTGHQHRRFP 232 (277)
T ss_pred cCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc--cccCCccHHHHHHhcC--CCCcEEEeCCCccccc
Confidence 1221 23333333432 3458999999987653211 0111 12223444443 4799999999997543
No 52
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.99 E-value=0.0085 Score=62.30 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCCCCcccceEEEec
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNG 635 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsG 635 (901)
+.+.+||++|-|+.+.+. +...+.+++|+ +||+..+-||+|.-+|-.+.-+.- +.++..+|+-
T Consensus 157 ~~~~fivM~HYPP~s~~~-----t~~~~sevlee---~rv~~~lyGHlHgv~~p~~~~s~v-~Gi~y~Lvaa 219 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDG-----TPGPFSEVLEE---GRVSKCLYGHLHGVPRPNIGFSNV-RGIEYMLVAA 219 (230)
T ss_pred CcCeEEEEEecCCCCCCC-----CCcchHHHHhh---cceeeEEeeeccCCCCCCCCcccc-cCceEEEEec
Confidence 458999999999987753 33344455565 699999999999977654433221 1244445543
No 53
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.94 E-value=0.013 Score=63.24 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCCccccccCc-----------------c-chhhHHHHHhhhhCCceeEEEcCccCC-cceee
Q 002605 565 RDSVIIMTHEPNWLLDWYFNN-----------------V-SGKNVKHLICDYLKGRCKLRIAGDMHH-YMRHS 618 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~-----------------~-t~d~l~~Lie~~l~~RV~LvLAGHiHh-YqR~~ 618 (901)
++.=|++||+|+.--..+.+. . ....+..+++++ |.+..+|||.|. |++..
T Consensus 164 ~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~l---kPryhf~gH~H~~f~~~~ 233 (262)
T cd00844 164 QPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHL---KPRYWFSAHLHVKFAALV 233 (262)
T ss_pred CCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHh---CCCEEEEecCCcccceec
Confidence 356799999999865443321 1 123345565664 889999999996 66554
No 54
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.87 E-value=0.007 Score=71.40 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=78.3
Q ss_pred CcEEEeCCCCCCCCChHHHHHHhhc----ccCC-----Cccc---------cCCCcceEEEECCCeEEEEEEecCCCC--
Q 002605 485 PQCYIIPGNHDWFDGLNTFMRFICH----KSWL-----GGWF---------MPQKKSYFALQLPKGWWVFGLDLALHC-- 544 (901)
Q Consensus 485 P~vfAIPGNHDWYDGL~aF~R~Fc~----r~~l-----gGW~---------mpQ~~SYFAlrLP~~wWLlGLDsql~g-- 544 (901)
.++|+..||||..-= +.|...+.. ..|+ +-|. +-+++.||+.....|-.++.|++.-..
T Consensus 251 vpvypalGNhe~~P~-N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~ 329 (577)
T KOG3770|consen 251 VPVYPALGNHEIHPV-NLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAP 329 (577)
T ss_pred CceeeecccCCCCcH-hhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEecccccccc
Confidence 349999999997521 122222211 1121 1122 335667999999999999999986311
Q ss_pred -------CCC-HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccC-Ccc
Q 002605 545 -------DID-VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMH-HYM 615 (901)
Q Consensus 545 -------dID-~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiH-hYq 615 (901)
..| .+|++||..+++++-..++.|=+++|=|+=..... .+- ..+--..+.+ +..-+.-.+-||.| ...
T Consensus 330 N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~-~~w-s~~f~~iv~r-~~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 330 NFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCL-EGW-SINFYRIVNR-FRSTIAGQFYGHTHIDEF 406 (577)
T ss_pred ceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchh-hhh-hHHHHHHHHH-HHHhhhhhccccCcceeE
Confidence 123 37899999999866677899999999998542111 110 1122222222 23346678999999 444
Q ss_pred ee
Q 002605 616 RH 617 (901)
Q Consensus 616 R~ 617 (901)
|.
T Consensus 407 ~v 408 (577)
T KOG3770|consen 407 RV 408 (577)
T ss_pred EE
Confidence 43
No 55
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.29 E-value=0.097 Score=56.45 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCcEEEeCCCCCCCCChHHHHHHhhccc--CCC-ccc--------cCCCcceEEEECC-CeEEEEEEecCCCCCCCH---
Q 002605 484 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WLG-GWF--------MPQKKSYFALQLP-KGWWVFGLDLALHCDIDV--- 548 (901)
Q Consensus 484 gP~vfAIPGNHDWYDGL~aF~R~Fc~r~--~lg-GW~--------mpQ~~SYFAlrLP-~~wWLlGLDsql~gdID~--- 548 (901)
+..+. .+||||+--|.+.+.+.+-+-. +++ +.. .+.-.+|-.++.. ...-++|+-+........
T Consensus 82 g~D~~-~lGNHefd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~ 160 (281)
T cd07409 82 GYDAM-TLGNHEFDDGVEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGG 160 (281)
T ss_pred CCCEE-EeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCC
Confidence 34444 5699999888887776643322 121 111 1112346444442 225677775543211110
Q ss_pred -----HHHHHHHHHHHh-hcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 549 -----YQFKFFAELVKE-QVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 549 -----~Q~~wF~~ll~~-~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
...+-.++.+++ +.+.-|-||+++|-..- ....+.+++ ..++++++||.|...
T Consensus 161 ~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~------------~d~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 161 KVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYE------------VDKEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred ceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCch------------hHHHHHHcC--CCCcEEEeCCcCccc
Confidence 112334443332 11235889999998641 112344443 469999999999753
No 56
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.99 E-value=0.015 Score=62.01 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.3
Q ss_pred cEEEeCCCCCCCCChH
Q 002605 486 QCYIIPGNHDWFDGLN 501 (901)
Q Consensus 486 ~vfAIPGNHDWYDGL~ 501 (901)
++++|+||||..+.+.
T Consensus 77 ~v~~i~GNHD~~~~~~ 92 (253)
T TIGR00619 77 PIVVISGNHDSAQRLS 92 (253)
T ss_pred eEEEEccCCCChhhcc
Confidence 4999999999876654
No 57
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=95.97 E-value=0.072 Score=55.83 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=13.9
Q ss_pred CceeEEEcCccCCcceee
Q 002605 601 GRCKLRIAGDMHHYMRHS 618 (901)
Q Consensus 601 ~RV~LvLAGHiHhYqR~~ 618 (901)
...+++++||.|.+....
T Consensus 190 ~~p~vii~Gh~h~~~~~~ 207 (243)
T cd07386 190 EVPDILHTGHVHVYGVGV 207 (243)
T ss_pred CCCCEEEECCCCchHhEE
Confidence 468899999999765543
No 58
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=95.87 E-value=0.049 Score=55.29 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.9
Q ss_pred CCceeEEEcCccCCcc
Q 002605 600 KGRCKLRIAGDMHHYM 615 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYq 615 (901)
+.+++++++||+|.-.
T Consensus 104 ~~~~dvii~GHTH~p~ 119 (178)
T cd07394 104 QLDVDILISGHTHKFE 119 (178)
T ss_pred hcCCCEEEECCCCcce
Confidence 3578999999999643
No 59
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=95.86 E-value=0.17 Score=53.61 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCcEEEeCCCCCCCCChHHHHHHhhccc--CC-Cccc-----cCCCcceEEEECCCe--EEEEEEecCCC------CC--
Q 002605 484 GPQCYIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-----MPQKKSYFALQLPKG--WWVFGLDLALH------CD-- 545 (901)
Q Consensus 484 gP~vfAIPGNHDWYDGL~aF~R~Fc~r~--~l-gGW~-----mpQ~~SYFAlrLP~~--wWLlGLDsql~------gd-- 545 (901)
+..+. .+||||+.-|++.+.+..-+-. ++ .... .+.-.+|-.++...| .=++|+-+... ..
T Consensus 70 g~d~~-~~GNHefd~G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~ 148 (257)
T cd07408 70 GYDAV-TPGNHEFDYGLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVK 148 (257)
T ss_pred CCcEE-ccccccccCCHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccC
Confidence 44454 5799998778887776643221 11 1111 111124655565523 44666654211 11
Q ss_pred -C---CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcce
Q 002605 546 -I---DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (901)
Q Consensus 546 -I---D~~--Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR 616 (901)
+ |.. -.++..+.++ .+.-|-||+++|.+...... . .+...+.++ -..++++|+||.|....
T Consensus 149 ~~~~~d~~~~~~~~~v~~l~--~~~~D~iIvl~H~G~~~~~~---~---~~~~~la~~--~~giDvIigGH~H~~~~ 215 (257)
T cd07408 149 DVTFEDPIEEAKKVIVAALK--AKGADVIVALGHLGVDRTSS---P---WTSTELAAN--VTGIDLIIDGHSHTTIE 215 (257)
T ss_pred CcEEecHHHHHHHHHHHHHH--hCCCCEEEEEeCcCcCCCCC---C---ccHHHHHHh--CCCceEEEeCCCccccc
Confidence 1 211 1122112221 23458999999988754311 1 112233333 24699999999997544
No 60
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.028 Score=60.30 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCceeEEEcCccCCcceeeecCCCCCcccceEEEecC
Q 002605 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGG 636 (901)
++.|+.+++||+|+-+-+. .+ +..+||.|.
T Consensus 185 ~~~vd~vI~GH~Hr~ai~~-i~------~~~yi~lGd 214 (237)
T COG2908 185 RHGVDGVIHGHTHRPAIHN-IP------GITYINLGD 214 (237)
T ss_pred HcCCCEEEecCcccHhhcc-CC------CceEEecCc
Confidence 6789999999999743332 11 237888775
No 61
>PHA02546 47 endonuclease subunit; Provisional
Probab=95.48 E-value=0.11 Score=57.81 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred CcEEEeCCCCCCC
Q 002605 485 PQCYIIPGNHDWF 497 (901)
Q Consensus 485 P~vfAIPGNHDWY 497 (901)
.++++||||||.+
T Consensus 77 i~v~~I~GNHD~~ 89 (340)
T PHA02546 77 ITLHVLVGNHDMY 89 (340)
T ss_pred CeEEEEccCCCcc
Confidence 4599999999975
No 62
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.45 E-value=0.19 Score=57.77 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=25.9
Q ss_pred CeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 566 DSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 566 d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
..-|++.|....... .+ .+.-+++++...++++.||+|..+
T Consensus 201 ~fnIlv~Hq~~~~~~-----~~----~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 201 WFNLLVLHQNHAAHT-----ST----SFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred ceEEEEeCceecCCC-----Cc----ccCchhhhhccCcEEEeccccccc
Confidence 357999999863221 11 111234455679999999999743
No 63
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=95.25 E-value=0.014 Score=58.94 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.8
Q ss_pred CCceeEEEcCccCCcceeeecCCCCCcccceEEEecC
Q 002605 600 KGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGC 636 (901)
Q Consensus 600 ~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGG 636 (901)
..+++++++||+|.-...... ...++++|+
T Consensus 187 ~~~~~~~i~GH~H~~~~~~~~-------~~~~~n~G~ 216 (217)
T cd07398 187 RKGVDGVICGHTHRPALHELD-------GKLYINLGD 216 (217)
T ss_pred hcCCCEEEECCCCCCCeEEEC-------CEEEEECCC
Confidence 568999999999976554422 125677664
No 64
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.13 E-value=0.017 Score=65.95 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.2
Q ss_pred cEEEeCCCCCCCCChHHHHHHh
Q 002605 486 QCYIIPGNHDWFDGLNTFMRFI 507 (901)
Q Consensus 486 ~vfAIPGNHDWYDGL~aF~R~F 507 (901)
++++|+||||.+..+....+.+
T Consensus 76 ~v~~I~GNHD~~~~l~~~~~~l 97 (407)
T PRK10966 76 QLVVLAGNHDSVATLNESRDLL 97 (407)
T ss_pred cEEEEcCCCCChhhhhhHHHHH
Confidence 4999999999988776555544
No 65
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=94.93 E-value=0.95 Score=49.12 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=85.6
Q ss_pred EEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhhhcCCCCCCccc
Q 002605 384 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYKKD 463 (901)
Q Consensus 384 Fd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e 463 (901)
+.|+||. -|......++..+.+- +. .-..|+++.-||.+=.+ .. .. +|-..+
T Consensus 2 ilfigdi-~g~~G~~~~~~~l~~l--k~--------~~~~D~vi~NgEn~~gg-~g--l~----~~~~~~---------- 53 (255)
T cd07382 2 ILFIGDI-VGKPGRKAVKEHLPKL--KK--------EYKIDFVIANGENAAGG-KG--IT----PKIAKE---------- 53 (255)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHH--HH--------HCCCCEEEECCccccCC-CC--CC----HHHHHH----------
Confidence 4577776 4555566677766542 21 12478999999965432 11 10 111111
Q ss_pred ccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCC-hHHHHHHhhcccCCCccc--cCCCcceEEEECCCeEE--EEEE
Q 002605 464 HVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDG-LNTFMRFICHKSWLGGWF--MPQKKSYFALQLPKGWW--VFGL 538 (901)
Q Consensus 464 ~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDG-L~aF~R~Fc~r~~lgGW~--mpQ~~SYFAlrLP~~wW--LlGL 538 (901)
|.+ -+..+..+ |||+|=.| +..++......-...... .|. +.|..++.. |.- ++++
T Consensus 54 ---------------L~~-~G~D~iTl-GNH~fD~gel~~~l~~~~~~l~~aN~~~~~pg-~~~~i~~~~-G~kIaVigl 114 (255)
T cd07382 54 ---------------LLS-AGVDVITM-GNHTWDKKEILDFIDEEPRLLRPANYPPGTPG-RGYGVVEVN-GKKIAVINL 114 (255)
T ss_pred ---------------HHh-cCCCEEEe-cccccCcchHHHHHhcCcCceEeeecCCCCCC-CCeEEEEEC-CEEEEEEEE
Confidence 112 34556666 99999666 333433221000011111 222 246666664 444 4444
Q ss_pred ecCC-CCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 539 DLAL-HCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 539 Dsql-~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
-... ...++.| ++-.++++++..+..|-+|+.+|--. +.+.. .+ ...+.++|++++.||+|.-
T Consensus 115 ~g~~~~~~~~~P-~~~~~~~v~~lk~~~D~IIV~~H~g~----------tsEk~-al-a~~ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 115 MGRVFMPPLDNP-FRAADELLEELKEEADIIFVDFHAEA----------TSEKI-AL-GWYLDGRVSAVVGTHTHVQ 178 (255)
T ss_pred ecccCCCcCCCH-HHHHHHHHHHHhcCCCEEEEEECCCC----------CHHHH-HH-HHhCCCCceEEEeCCCCcc
Confidence 3111 1123333 33455555421223578999999732 11111 11 2345779999999999964
No 66
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.018 Score=64.36 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=32.5
Q ss_pred CccEEEEcccccCcCCChhhhh-hccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCCCCh
Q 002605 422 RGDVLLIGGDLAYPNPSAFTYE-RRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGL 500 (901)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~-~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWYDGL 500 (901)
+.|+||++|| +|..+....+. .++.+-++. +++ .+.++|+|+||||.-+++
T Consensus 40 ~vD~vliAGD-lFd~~~Ps~~a~~~~~~~l~~--------------------------l~~-~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 40 KVDFVLIAGD-LFDTNNPSPRALKLFLEALRR--------------------------LKD-AGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred cCCEEEEccc-cccCCCCCHHHHHHHHHHHHH--------------------------hcc-CCCcEEEecCCCCchhcc
Confidence 4699999999 57775544343 233222221 222 235599999999987664
Q ss_pred H
Q 002605 501 N 501 (901)
Q Consensus 501 ~ 501 (901)
.
T Consensus 92 ~ 92 (390)
T COG0420 92 S 92 (390)
T ss_pred c
Confidence 3
No 67
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=94.21 E-value=1.5 Score=48.03 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=45.5
Q ss_pred ceEEEECCCeEE--EEEEecCCCC---CC---C---HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhH
Q 002605 523 SYFALQLPKGWW--VFGLDLALHC---DI---D---VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNV 591 (901)
Q Consensus 523 SYFAlrLP~~wW--LlGLDsql~g---dI---D---~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l 591 (901)
+|..++..+|.. ++|+=+.... .+ | ..|.+|+.+++++ +.-|-||+++|-..-.. .+.....
T Consensus 137 ~y~i~~~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~--~~~DvIIvlsH~G~~~d-----~~~~~~~ 209 (282)
T cd07407 137 RYRKFTTKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN--EDVDLILVLGHMPVRDD-----AEFKVLH 209 (282)
T ss_pred ceEEEEcCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCC-----ccHHHHH
Confidence 576767654544 5666432111 11 2 2344577776653 34689999999887533 1111111
Q ss_pred HHHHhhhhCCceeEEEcCccCCc
Q 002605 592 KHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 592 ~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
..+ .+.++...++.|+||.|..
T Consensus 210 ~~l-a~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 210 DAI-RKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHH-HHhCCCCCEEEEeCCcccc
Confidence 222 2323333448999999974
No 68
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.07 E-value=0.9 Score=58.40 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=28.9
Q ss_pred CCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
.-|-||+++|...-..... . ......+.+++ ..++++|+||.|...
T Consensus 838 ~~D~VV~LsH~G~~~d~~~--~--~~~~~~lA~~v--~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 838 KVDAIIALTHLGSNQDRTT--G--EITGLELAKKV--KGVDAIISAHTHTLV 883 (1163)
T ss_pred CCCEEEEEecCCccccccc--c--ccHHHHHHHhC--CCCCEEEeCCCCccc
Confidence 4589999999986432110 1 11223444443 359999999999754
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=93.57 E-value=0.071 Score=62.47 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCeEEEEEeecCCCCCCchHHHHHhcccccccccCCCCccccCccEEEEccccc
Q 002605 379 KEDLWFDFMADTGDGGNSSYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLA 433 (901)
Q Consensus 379 d~~~wFd~VaDtGDG~dStYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlv 433 (901)
+++.++.+++|+.-|.+....-+-.+-...+.-..+++...-.+++.+|++||++
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDiv 295 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLV 295 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccc
Confidence 5678999999999665433221111111111100000111134678999999988
No 70
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=93.56 E-value=0.028 Score=58.32 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=17.2
Q ss_pred ccCccEEEEcccccCcCCChhhhhhcc
Q 002605 420 LPRGDVLLIGGDLAYPNPSAFTYERRL 446 (901)
Q Consensus 420 lPRgdfLVlgGDlvYP~gs~e~Y~~Rf 446 (901)
.++.|.++++||++=-++...+--..+
T Consensus 30 ~~~~d~lv~lGD~vdrG~~~~~vl~~l 56 (208)
T cd07425 30 IGGSTHLVQLGDIFDRGPDVIEILWLL 56 (208)
T ss_pred cCCCcEEEEECCCcCCCcCHHHHHHHH
Confidence 345789999999775555443333433
No 71
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=93.40 E-value=0.07 Score=53.10 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCccee
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRH 617 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~ 617 (901)
+...|+++|.|..... ...+.+++++||+|..+.-
T Consensus 106 ~~~~i~l~H~~~~~~~------------------~~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 106 GGRRVYLSHYPILEWN------------------GLDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCEEEEEEeCCcccCC------------------CCCCCeEEEEeeeCCCCCC
Confidence 5688999997653210 0236789999999975444
No 72
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=93.37 E-value=0.067 Score=53.36 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.4
Q ss_pred CccEEEEcccccCcC
Q 002605 422 RGDVLLIGGDLAYPN 436 (901)
Q Consensus 422 RgdfLVlgGDlvYP~ 436 (901)
++|.|+++||++...
T Consensus 41 ~~d~lii~GDl~~~~ 55 (172)
T cd07391 41 GPERLIILGDLKHSF 55 (172)
T ss_pred CCCEEEEeCcccccc
Confidence 479999999999643
No 73
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=92.92 E-value=2.7 Score=45.77 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCCCccccccCccc-hhhHHHHHhhhhCCceeEEEcCccCCcce
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVS-GKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t-~d~l~~Lie~~l~~RV~LvLAGHiHhYqR 616 (901)
.-|-||+++|-..-........+. ......++.+ +..+++++|+||.|....
T Consensus 191 ~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~-~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 191 GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNR-LDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhh-cCCCCCEEEeCccCcccc
Confidence 458999999987653322111000 0112233333 235799999999997654
No 74
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=92.72 E-value=2.9 Score=45.47 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=29.7
Q ss_pred CCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
.-|-||+++|-........... . +....+.+++....++++|+||.|...
T Consensus 173 ~~D~VI~lsH~G~~~~~~~~~~-~-~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 173 KPDIVIAATHMGHYDNGEHGSN-A-PGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CCCEEEEEecccccCCcccccc-C-chHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 4589999999887533211111 0 111233333223579999999999754
No 75
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=91.76 E-value=0.58 Score=47.00 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=32.0
Q ss_pred CeEEEEecCCCCccccccC--------ccchhhHHHHHhhhhCCceeEEEcCccC-Cccee
Q 002605 566 DSVIIMTHEPNWLLDWYFN--------NVSGKNVKHLICDYLKGRCKLRIAGDMH-HYMRH 617 (901)
Q Consensus 566 d~VIL~tHeP~w~~d~~~~--------~~t~d~l~~Lie~~l~~RV~LvLAGHiH-hYqR~ 617 (901)
+.-||+||+|+..-....+ ....+.++.++++. |.+..+|||.| .|+|-
T Consensus 69 ~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~l---kPrYhf~gh~~~fyer~ 126 (150)
T cd07380 69 GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKL---KPRYHFAGLEGVFYERE 126 (150)
T ss_pred CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHc---CCCeEeecCCCceEeec
Confidence 4568999999975422111 11234556666664 88899999999 67763
No 76
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=91.29 E-value=3.6 Score=48.30 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=63.6
Q ss_pred EeCCCCCCCCChHHHHHHhhccc--CC-Ccc------ccCCCcceEEEECCCe-EEEEEEecCCC---------CCCC-H
Q 002605 489 IIPGNHDWFDGLNTFMRFICHKS--WL-GGW------FMPQKKSYFALQLPKG-WWVFGLDLALH---------CDID-V 548 (901)
Q Consensus 489 AIPGNHDWYDGL~aF~R~Fc~r~--~l-gGW------~mpQ~~SYFAlrLP~~-wWLlGLDsql~---------gdID-~ 548 (901)
...||||..-|++.+.+...+-. ++ +.. ..+.-.+|.-++.+.- .=++|+.+... .++. .
T Consensus 107 ~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~ 186 (517)
T COG0737 107 MTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFR 186 (517)
T ss_pred EeecccccccCHHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEc
Confidence 46799999999988888754322 21 111 1122235767776542 44677765211 1111 1
Q ss_pred HHHHHHHHHHHhhcCC--CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 549 YQFKFFAELVKEQVGE--RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 549 ~Q~~wF~~ll~~~v~~--~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
...+..++.+.+ +.. -|-||+++|-+.-........... .....+ ..+++.++||.|++
T Consensus 187 d~~e~~~~~i~e-lk~~~vD~iI~LsH~G~~~d~~~~~~~~~--~~~~~~----~~iD~i~~GH~H~~ 247 (517)
T COG0737 187 DPIEAAKKYIPE-LKGEGVDVIIALSHLGIEDDLELASEVPG--DVDVAV----PGIDLIIGGHSHTV 247 (517)
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEEEeccCcCccccccccccc--cccccc----cCcceEeccCCccc
Confidence 223344443332 222 589999999988654322111000 000000 23999999999975
No 77
>PRK09453 phosphodiesterase; Provisional
Probab=91.21 E-value=0.29 Score=49.11 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=11.6
Q ss_pred CccEEEEcccccCc
Q 002605 422 RGDVLLIGGDLAYP 435 (901)
Q Consensus 422 RgdfLVlgGDlvYP 435 (901)
++|.++++||++.-
T Consensus 27 ~~d~ii~lGDi~~~ 40 (182)
T PRK09453 27 GADWLVHLGDVLYH 40 (182)
T ss_pred CCCEEEEccccccc
Confidence 47899999998753
No 78
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=90.91 E-value=2.9 Score=49.48 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
.-|-||+++|.-........ ++.+.-..+.+++-...|+++|+||.|.+-
T Consensus 209 ~~D~IV~LsH~G~~~~~~~~--~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 209 KPDVIIALTHMGHYDDGEHG--SNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCEEEEEeccccccCCccC--CCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 45889999998875321111 011111344455312479999999999753
No 79
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=90.33 E-value=3.1 Score=49.46 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred EEEeCCCCCCCCChHHHHHHhhccc--CC-Cccc-------cCCCcceEEEECC-CeEEEEEEecCCC-C-------CC-
Q 002605 487 CYIIPGNHDWFDGLNTFMRFICHKS--WL-GGWF-------MPQKKSYFALQLP-KGWWVFGLDLALH-C-------DI- 546 (901)
Q Consensus 487 vfAIPGNHDWYDGL~aF~R~Fc~r~--~l-gGW~-------mpQ~~SYFAlrLP-~~wWLlGLDsql~-g-------dI- 546 (901)
=.+.+||||+=-|.+.+.+...+-. ++ +... .+.-.+|-.++.. ...=++|+.+... . ++
T Consensus 84 Da~~lGNHEFd~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~ 163 (550)
T TIGR01530 84 DFFTLGNHEFDAGNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIK 163 (550)
T ss_pred CEEEeccccccCCHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceE
Confidence 4568999997557766665543222 11 1110 0122356555542 2266888864211 0 11
Q ss_pred --CHH--HHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 547 --DVY--QFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 547 --D~~--Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
|.. -.++.++ +++ +.-|-||+++|--.- .+ ..+.+++ ..++++|+||.|.+-
T Consensus 164 f~d~~~~~~~~v~~-Lk~--~g~D~II~lsH~g~~----------~d--~~la~~~--~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 164 FIDEIAAAQIAANA-LKQ--QGINKIILLSHAGFE----------KN--CEIAQKI--NDIDVIVSGDSHYLL 219 (550)
T ss_pred ECCHHHHHHHHHHH-HHh--CCCCEEEEEecCCcH----------HH--HHHHhcC--CCCCEEEeCCCCccc
Confidence 221 1122222 221 234889999997531 01 1233342 369999999999853
No 80
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=89.47 E-value=1.1 Score=46.16 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCC
Q 002605 563 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 563 ~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHh 613 (901)
.-++..|++.|-|.=..+ +.+ ++.. +.+++.++++.+-||.|.
T Consensus 105 e~dg~~~~LsHyP~~~~~--~~~----~~~r--~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 105 EWDGEDVYLSHYPRPGQD--HPG----MESR--FDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred eECCeEEEEEeCCCCCCC--Ccc----hhhh--HHHHhccCCeEEeccccc
Confidence 346788999999874332 111 2222 244578999999999997
No 81
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=88.63 E-value=5.7 Score=44.19 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcc
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYM 615 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYq 615 (901)
-|-||+++|--.+.. + ..+.+++ ..++++|.||.|.+.
T Consensus 208 vD~II~LsH~g~~~~---------d--~~lA~~v--~gIDvIigGHsH~~l 245 (313)
T cd08162 208 INKIILLSHLQQISI---------E--QALAALL--SGVDVIIAGGSNTLL 245 (313)
T ss_pred CCEEEEEecccccch---------H--HHHHhcC--CCCCEEEeCCCCccC
Confidence 488999999853321 1 2333442 359999999999864
No 82
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=87.71 E-value=8.7 Score=40.29 Aligned_cols=133 Identities=13% Similarity=0.074 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCCCCCCChHHHHHHh--hcccC---CC-ccccCCCcceEEEECCCe-EEEEEEecCCCCCCC--------
Q 002605 483 DGPQCYIIPGNHDWFDGLNTFMRFI--CHKSW---LG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCDID-------- 547 (901)
Q Consensus 483 ~gP~vfAIPGNHDWYDGL~aF~R~F--c~r~~---lg-GW~mpQ~~SYFAlrLP~~-wWLlGLDsql~gdID-------- 547 (901)
-+..+..+-+||++=-|.+++.+-. .++.. .+ |-...+...|..++.+.. .-++|+-+.......
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~ 155 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGG 155 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCccc
Confidence 4566777777999866666665532 11111 11 111111123545555431 456666543322111
Q ss_pred --HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeec
Q 002605 548 --VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYV 620 (901)
Q Consensus 548 --~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~ 620 (901)
..-.+-+.+.+++..+..|-||+.+|--. + ......+..+.+.+++....+++++.||.|..+..+..
T Consensus 156 ~~~~~~~~~~~~i~~lr~~~D~vIv~~H~G~---e--~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~ 225 (239)
T cd07381 156 VNPLDLERIAADIAEAKKKADIVIVSLHWGV---E--YSYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIY 225 (239)
T ss_pred cCccCHHHHHHHHHHHhhcCCEEEEEecCcc---c--CCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEE
Confidence 00012233333221123688999999422 1 11111122333434444457999999999998877653
No 83
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=87.26 E-value=2.8 Score=43.20 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=27.0
Q ss_pred CCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCC
Q 002605 563 GERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 563 ~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHh 613 (901)
.-++..|.++|-=.+... .....+..+-++ ..+++++.||+|-
T Consensus 78 ~~~g~ki~l~HGh~~~~~-----~~~~~l~~la~~---~~~Dvli~GHTH~ 120 (172)
T COG0622 78 EVGGVKIFLTHGHLYFVK-----TDLSLLEYLAKE---LGADVLIFGHTHK 120 (172)
T ss_pred EECCEEEEEECCCccccc-----cCHHHHHHHHHh---cCCCEEEECCCCc
Confidence 346789999997443210 012334444333 4799999999995
No 84
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=85.62 E-value=21 Score=37.65 Aligned_cols=53 Identities=13% Similarity=0.067 Sum_probs=32.5
Q ss_pred CCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecC
Q 002605 564 ERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVP 621 (901)
Q Consensus 564 ~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~ 621 (901)
..|-||+++|--.-.. ..++ +..+.+.+++....++++++||.|..+..+..+
T Consensus 172 ~~D~vIv~~H~G~e~~----~~p~-~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e~~~ 224 (239)
T smart00854 172 KADVVIVSLHWGVEYQ----YEPT-DEQRELAHALIDAGADVVIGHHPHVLQPIEIYK 224 (239)
T ss_pred cCCEEEEEecCccccC----CCCC-HHHHHHHHHHHHcCCCEEEcCCCCcCCceEEEC
Confidence 3588999998654211 1111 222334344334579999999999988776543
No 85
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=84.85 E-value=13 Score=45.36 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=27.8
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
-|-||+++|...-.. .+ .+..+|....++++ ..|+++++||.|..
T Consensus 196 aDvII~LsH~G~~~d-~~--~~~~en~~~~l~~v--~gID~Il~GHsH~~ 240 (626)
T TIGR01390 196 ADIIVALAHSGISAD-PY--QPGAENSAYYLTKV--PGIDAVLFGHSHAV 240 (626)
T ss_pred CCEEEEEeccCcCCC-cc--ccccchHHHHHhcC--CCCCEEEcCCCCcc
Confidence 478999999875422 11 11223333333443 46999999999974
No 86
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=83.90 E-value=0.94 Score=46.58 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=13.9
Q ss_pred cCccEEEEcccccCcCCC
Q 002605 421 PRGDVLLIGGDLAYPNPS 438 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs 438 (901)
++.|.++++||++.-++.
T Consensus 27 ~~~d~~~~~GD~v~~g~~ 44 (207)
T cd07424 27 PARDRLISVGDLIDRGPE 44 (207)
T ss_pred CCCCEEEEeCCcccCCCC
Confidence 357999999998875543
No 87
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=83.00 E-value=4.5 Score=47.82 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCeEEEEEeecC-CCCCC-chHHHHHhcccccccccCCCCccccCccEEEEcccccCcCCCh
Q 002605 380 EDLWFDFMADTG-DGGNS-SYSVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 380 ~~~wFd~VaDtG-DG~dS-tYtVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (901)
..+.|...||++ +|+.. -|+..+-|++. .+||+||.||-+|-.|-.
T Consensus 138 ~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--------------~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 138 RAIRFVWFADASCQGWEIGYMTAYKTMAKE--------------EPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CcchhhhhhhccccccccchhHHHHHHHhc--------------CCCEEEEcCCeeeccCCc
Confidence 345555556654 44333 44666667652 279999999999987643
No 88
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=82.91 E-value=31 Score=38.10 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCC
Q 002605 553 FFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHH 613 (901)
Q Consensus 553 wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHh 613 (901)
-.++++++...+.|-+||..|.-. + .....+..++.+||++++.-|+|=
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~Haea----------t--sEK~a~~~~ldg~vsaVvGtHtHV 180 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAET----------T--SEKNAFGMAFDGYVTAVVGTHTHV 180 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCC----------H--HHHHHHHHHhCCCccEEEeCCCCC
Confidence 344444422223578999999654 1 112223455678999999999994
No 89
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=81.84 E-value=1.2 Score=47.18 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=12.9
Q ss_pred CccEEEEcccccCcCC
Q 002605 422 RGDVLLIGGDLAYPNP 437 (901)
Q Consensus 422 RgdfLVlgGDlvYP~g 437 (901)
++|.+++.||+.....
T Consensus 58 ~~d~vIi~GDl~h~~~ 73 (225)
T TIGR00024 58 GIEALIINGDLKHEFK 73 (225)
T ss_pred CCCEEEEcCccccccC
Confidence 4789999999986544
No 90
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=81.05 E-value=2.5 Score=49.03 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=29.2
Q ss_pred CccEEEEcccccCcC--CChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCCC
Q 002605 422 RGDVLLIGGDLAYPN--PSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWF 497 (901)
Q Consensus 422 RgdfLVlgGDlvYP~--gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDWY 497 (901)
.||+++++||+.=-+ ...+++..+..+ +.-..+ .| ...++.-||||||+=
T Consensus 93 kPdvvffLGDLfDeG~~~~~eEf~~~~~R-fkkIf~------------~k-------------~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 93 KPDVVFFLGDLFDEGQWAGDEEFKKRYER-FKKIFG------------RK-------------GNIKVIYIAGNHDIG 144 (410)
T ss_pred CCCEEEEeccccccCccCChHHHHHHHHH-HHHhhC------------CC-------------CCCeeEEeCCccccc
Confidence 479999999954312 334566544422 322221 11 123489999999973
No 91
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=79.06 E-value=21 Score=43.80 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
-|-||+++|--.- .+.+ .+..+|....++++ ..+++++.||.|..
T Consensus 219 aDvII~LsH~G~~-~d~~--~~~aen~~~~l~~v--~gID~Il~GHsH~~ 263 (649)
T PRK09420 219 ADIVVAIPHSGIS-ADPY--KAMAENSVYYLSEV--PGIDAIMFGHSHAV 263 (649)
T ss_pred CCEEEEEecCCcC-CCCc--cccccchhHHHhcC--CCCCEEEeCCCCcc
Confidence 4788888888653 2211 11223333333442 35999999999975
No 92
>PHA02239 putative protein phosphatase
Probab=77.38 E-value=1.7 Score=46.54 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=12.6
Q ss_pred ccEEEEcccccCcCCCh
Q 002605 423 GDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 423 gdfLVlgGDlvYP~gs~ 439 (901)
.|.++++||++--++..
T Consensus 30 ~d~li~lGD~iDrG~~s 46 (235)
T PHA02239 30 EETIVFLGDYVDRGKRS 46 (235)
T ss_pred CCEEEEecCcCCCCCCh
Confidence 58899999977655443
No 93
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=75.24 E-value=2.4 Score=46.46 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=14.7
Q ss_pred cCccEEEEcccccCcCCCh
Q 002605 421 PRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (901)
|..|.++++||++--++..
T Consensus 27 ~~~D~li~lGDlVdrGp~s 45 (275)
T PRK00166 27 PAKDTLWLVGDLVNRGPDS 45 (275)
T ss_pred CCCCEEEEeCCccCCCcCH
Confidence 3568899999988866544
No 94
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=73.08 E-value=2.4 Score=49.94 Aligned_cols=57 Identities=28% Similarity=0.545 Sum_probs=35.3
Q ss_pred cccCccEEEEccccc-----CcCCChhhhhhccccchhhhcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCC
Q 002605 419 TLPRGDVLLIGGDLA-----YPNPSAFTYERRLFRPFEYALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGN 493 (901)
Q Consensus 419 ~lPRgdfLVlgGDlv-----YP~gs~e~Y~~Rfv~PYe~Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGN 493 (901)
.-+|-+.++.+||+| ||+-..+-...--+++|+.+-. .. ++.| +-+.++++|||
T Consensus 259 ~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~--------~L----~~vp---------~~I~v~i~PGn 317 (481)
T COG1311 259 LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAE--------FL----DQVP---------EHIKVFIMPGN 317 (481)
T ss_pred cccceEEEEEecccccccccccCcccccccccchHHHHHHHH--------HH----hhCC---------CCceEEEecCC
Confidence 345678899999985 7865544444434455654421 00 1122 34679999999
Q ss_pred CCC
Q 002605 494 HDW 496 (901)
Q Consensus 494 HDW 496 (901)
||-
T Consensus 318 hDa 320 (481)
T COG1311 318 HDA 320 (481)
T ss_pred CCc
Confidence 996
No 95
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=72.38 E-value=2.5 Score=44.29 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEEeecCCCCCCchH-HHHHhcccccccccCCCCccccCccEEEEcccccCcCCCh
Q 002605 383 WFDFMADTGDGGNSSYS-VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 383 wFd~VaDtGDG~dStYt-VArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (901)
.+.+++|. ...+. ..++++.- + -.+..|.++.+||++--++..
T Consensus 16 ri~visDi----Hg~~~~l~~~l~~~--~--------~~~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 16 HIWVVGDI----HGEYQLLQSRLHQL--S--------FCPETDLLISVGDNIDRGPES 59 (218)
T ss_pred eEEEEEec----cCCHHHHHHHHHhc--C--------CCCCCCEEEECCCCcCCCcCH
Confidence 67889998 22333 33333321 1 024578999999999866554
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=72.03 E-value=56 Score=41.24 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcce
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR 616 (901)
-|-||+++|.-.-.. .. ....++....++++ ..|+++|+||.|..-.
T Consensus 245 aDvIIaLsH~G~~~d-~~--~~~~ena~~~l~~v--~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 245 ADVIVALAHSGVDKS-GY--NVGMENASYYLTEV--PGVDAVLMGHSHTEVK 291 (780)
T ss_pred CCEEEEEeccCcccc-cc--cccchhhhHHHhcC--CCCCEEEECCCCCccc
Confidence 478889999876432 11 11123333333442 4699999999998643
No 97
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=70.41 E-value=3.2 Score=45.03 Aligned_cols=79 Identities=28% Similarity=0.265 Sum_probs=46.1
Q ss_pred EEEEEeecCCCCCCchH----------HHHHhcccccccccCCCCccccCccEEEEcccccCcCCChhhhhhccccchhh
Q 002605 383 WFDFMADTGDGGNSSYS----------VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEY 452 (901)
Q Consensus 383 wFd~VaDtGDG~dStYt----------VArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~e~Y~~Rfv~PYe~ 452 (901)
.-.++||+==|+...++ -.++...-. +-...-+++-+|+.||+--..+-....+.++++-+..
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~-------~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~ 93 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLD-------RIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLE 93 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHH-------HHHHhcCCCEEEEcCccccccCccccccHHHHHHHHH
Confidence 45788998878777662 222221100 0011235778999999766655444455555455543
Q ss_pred hcCCCCCCcccccccCCCCCCCCCcccccCCCCcEEEeCCCCCC
Q 002605 453 ALQPPPWYKKDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDW 496 (901)
Q Consensus 453 Al~~~~~~~~e~i~~~~pe~p~~~~~l~~~~gP~vfAIPGNHDW 496 (901)
++ +...+..|+||||=
T Consensus 94 ~~----------------------------~~~evi~i~GNHD~ 109 (235)
T COG1407 94 LL----------------------------DEREVIIIRGNHDN 109 (235)
T ss_pred Hh----------------------------ccCcEEEEeccCCC
Confidence 32 12249999999995
No 98
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=66.78 E-value=5.1 Score=43.61 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.6
Q ss_pred cCccEEEEcccccCcCCCh
Q 002605 421 PRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (901)
|..|.++.+||+|--++..
T Consensus 25 ~~~D~Li~lGDlVdRGp~s 43 (257)
T cd07422 25 PAKDRLWLVGDLVNRGPDS 43 (257)
T ss_pred CCCCEEEEecCcCCCCcCH
Confidence 4578999999988766544
No 99
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=62.38 E-value=1.4e+02 Score=31.87 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCCCCChHHHHH---Hhhccc--CCC-ccccCCCcceEEEECCCe-EEEEEEecCCCCC----------
Q 002605 483 DGPQCYIIPGNHDWFDGLNTFMR---FICHKS--WLG-GWFMPQKKSYFALQLPKG-WWVFGLDLALHCD---------- 545 (901)
Q Consensus 483 ~gP~vfAIPGNHDWYDGL~aF~R---~Fc~r~--~lg-GW~mpQ~~SYFAlrLP~~-wWLlGLDsql~gd---------- 545 (901)
-+..+..+--||-+=-|.+++.+ .+-+.. +.| |....+.+.+..++.+.. .-+++.-....+.
T Consensus 74 ~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~ 153 (250)
T PF09587_consen 74 AGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYG 153 (250)
T ss_pred cCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCcccccccccc
Confidence 45668888889965435444443 322211 122 233333334455666432 3445544332110
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 546 -----------IDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 546 -----------ID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
..+++.+.+.+.+++..+..|-|||+.|- .... .....+..+.+.++++...+++++.+|.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~Hw-G~e~----~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 154 FSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHW-GIEY----ENYPTPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred ccccccccccccccchHHHHHHHHHHHhcCCCEEEEEecc-CCCC----CCCCCHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 01233466777665434567899999986 2111 1111233344445545557999999999998
Q ss_pred ceeeecC
Q 002605 615 MRHSYVP 621 (901)
Q Consensus 615 qR~~p~~ 621 (901)
|..+...
T Consensus 229 q~~E~y~ 235 (250)
T PF09587_consen 229 QPVEIYK 235 (250)
T ss_pred cceEEEC
Confidence 8877553
No 100
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=58.47 E-value=8.2 Score=39.38 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=13.2
Q ss_pred cCccEEEEcccccCcCCC
Q 002605 421 PRGDVLLIGGDLAYPNPS 438 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs 438 (901)
+..|.+|++||++--++.
T Consensus 23 ~~~d~li~lGD~vdrg~~ 40 (225)
T cd00144 23 PPNDKLIFLGDYVDRGPD 40 (225)
T ss_pred CCCCEEEEECCEeCCCCC
Confidence 347889999997765443
No 101
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=57.50 E-value=21 Score=38.67 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.1
Q ss_pred CcEEEeCCCCCCCCChHHHHHHhhc
Q 002605 485 PQCYIIPGNHDWFDGLNTFMRFICH 509 (901)
Q Consensus 485 P~vfAIPGNHDWYDGL~aF~R~Fc~ 509 (901)
+.++.|||| .|+.+|..-|.+
T Consensus 3 ~li~~IPGN----PGlv~fY~~Fl~ 23 (266)
T PF10230_consen 3 PLIVFIPGN----PGLVEFYEEFLS 23 (266)
T ss_pred EEEEEECCC----CChHHHHHHHHH
Confidence 469999999 898888877754
No 102
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=56.76 E-value=8.5 Score=41.08 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=26.4
Q ss_pred EEEEeecCCCCCCch-HHHHHhcccccccccCCCCccccCccEEEEcccccCcCCCh
Q 002605 384 FDFMADTGDGGNSSY-SVARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 384 Fd~VaDtGDG~dStY-tVArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (901)
+.+|||. ...| +..+++.+-..+. .++....|..|.++++||++=-++..
T Consensus 3 ~~vIGDI----HG~~~~L~~lL~~~~~~~--~~~~~~~~~~d~li~lGDliDRGp~S 53 (245)
T PRK13625 3 YDIIGDI----HGCYQEFQALTEKLGYNW--SSGLPVHPDQRKLAFVGDLTDRGPHS 53 (245)
T ss_pred eEEEEEC----ccCHHHHHHHHHHcCCCc--ccCcccCCCCCEEEEECcccCCCcCh
Confidence 6778887 2233 2555554321111 01111235568899999977655443
No 103
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=56.67 E-value=61 Score=42.38 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcce
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMR 616 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR 616 (901)
-|-||+++|-..=.... ..+ ..+....+.++. ..++++++||.|....
T Consensus 235 aDvII~l~H~G~~~~~~-~~~-~en~~~~la~~~--~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 235 ADVIVALAHSGIESEYQ-SSG-AEDSVYDLAEKT--KGIDAIVAGHQHGLFP 282 (1163)
T ss_pred CCEEEEEeccCcCCCCC-CCC-cchHHHHHHHhC--CCCcEEEeCCCccccc
Confidence 58899999987632211 111 122233454443 4699999999998654
No 104
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=55.61 E-value=7.4 Score=40.66 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=25.7
Q ss_pred EEEEEeecCCCCCCchH-HHHHhcccccccccCCCCccccCccEEEEcccccCcCCCh
Q 002605 383 WFDFMADTGDGGNSSYS-VARLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 383 wFd~VaDtGDG~dStYt-VArLlAqp~L~v~~~~~~~~lPRgdfLVlgGDlvYP~gs~ 439 (901)
.+.+|||. ...|. ..+++++- +. .|+.|-|+.+||++=-++..
T Consensus 18 ri~vigDI----HG~~~~L~~lL~~i--~~--------~~~~D~li~lGDlvDrGp~s 61 (218)
T PRK11439 18 HIWLVGDI----HGCFEQLMRKLRHC--RF--------DPWRDLLISVGDLIDRGPQS 61 (218)
T ss_pred eEEEEEcc----cCCHHHHHHHHHhc--CC--------CcccCEEEEcCcccCCCcCH
Confidence 56888888 33332 44445432 11 24578899999988545543
No 105
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=55.18 E-value=9.4 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=14.2
Q ss_pred cCccEEEEcccccCcCCCh
Q 002605 421 PRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (901)
|..|-++.+||++--++..
T Consensus 36 ~~~d~lv~lGDlIDrG~~s 54 (234)
T cd07423 36 PEGRRAVFVGDLVDRGPDS 54 (234)
T ss_pred CCCCEEEEECCccCCCCCH
Confidence 3468899999988765543
No 106
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=52.11 E-value=49 Score=40.46 Aligned_cols=126 Identities=18% Similarity=0.229 Sum_probs=72.4
Q ss_pred cccCCCCcEEEeCCCCCCCCCh-H---H--HHHHhhcccC------CC--ccccCCCcceEEEECCCeEEEEEEec----
Q 002605 479 LKQYDGPQCYIIPGNHDWFDGL-N---T--FMRFICHKSW------LG--GWFMPQKKSYFALQLPKGWWVFGLDL---- 540 (901)
Q Consensus 479 l~~~~gP~vfAIPGNHDWYDGL-~---a--F~R~Fc~r~~------lg--GW~mpQ~~SYFAlrLP~~wWLlGLDs---- 540 (901)
|..|+.+ ..|||+.|.+- + . |...+..+-- .. +=..|--.+|+.+-.|++..+.....
T Consensus 120 ~~~yD~l----~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~ 195 (602)
T KOG4419|consen 120 MMPYDIL----TLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCAS 195 (602)
T ss_pred cCccchh----hhcchhhhhhhhhccchhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEEEeecc
Confidence 3344556 78999998772 1 1 4433222110 01 11223334688888899866655533
Q ss_pred -CCCC-CC-C-----HHHHHHHHHHHHhhcCCCCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeE-EEcCcc
Q 002605 541 -ALHC-DI-D-----VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKL-RIAGDM 611 (901)
Q Consensus 541 -ql~g-dI-D-----~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~L-vLAGHi 611 (901)
+.+. +. + -.|.+|..+.++. +.-+-+|++.|-|.=.. ...+.+-..+++..+ .+++ ++.||.
T Consensus 196 f~~~~n~~~v~~veei~~~~~~~~m~~~--~~idlii~lgH~~~~~~------~e~~~~~~~ir~~~p-~t~IqviGGHs 266 (602)
T KOG4419|consen 196 FSGAANRTVVVPVEEITQSEWEQDMVNT--TDIDLIIALGHSPVRDD------DEWKSLHAEIRKVHP-NTPIQVIGGHS 266 (602)
T ss_pred ccccCCCcccccHHHHhccchHHHHhhc--cCccEEEEecccccccc------hhhhhHHHHHhhhCC-CCceEEECchh
Confidence 2111 11 1 1588999998863 56688888888886322 122344444555443 3555 999999
Q ss_pred C--Cccee
Q 002605 612 H--HYMRH 617 (901)
Q Consensus 612 H--hYqR~ 617 (901)
| .|.++
T Consensus 267 hird~a~~ 274 (602)
T KOG4419|consen 267 HIRDFAVY 274 (602)
T ss_pred hhhhhhhc
Confidence 9 47776
No 107
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=50.99 E-value=20 Score=39.33 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=31.6
Q ss_pred EEEEeecCCCCCCchHHHHHhcccccccccCC--CCccccCccEEEEcccccCcCCC
Q 002605 384 FDFMADTGDGGNSSYSVARLLAQPHIRVTRDD--SVFTLPRGDVLLIGGDLAYPNPS 438 (901)
Q Consensus 384 Fd~VaDtGDG~dStYtVArLlAqp~L~v~~~~--~~~~lPRgdfLVlgGDlvYP~gs 438 (901)
..+|+|++=|.+.....+-.+-+..|+-..++ +...-.+-.-||+.||.+=+.+.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~ 58 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQ 58 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCccccccc
Confidence 56889998777765555544444444421111 10112234469999999887654
No 108
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=43.00 E-value=22 Score=37.56 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.9
Q ss_pred CccEEEEccccc
Q 002605 422 RGDVLLIGGDLA 433 (901)
Q Consensus 422 RgdfLVlgGDlv 433 (901)
..|.+|.+||++
T Consensus 33 ~~d~lvflGD~I 44 (222)
T cd07413 33 PERQVVFLGDLI 44 (222)
T ss_pred CCCEEEEeCccc
Confidence 467899999966
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=42.43 E-value=19 Score=40.06 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.2
Q ss_pred cCccEEEEcccccCcCCCh
Q 002605 421 PRGDVLLIGGDLAYPNPSA 439 (901)
Q Consensus 421 PRgdfLVlgGDlvYP~gs~ 439 (901)
|..|-++++||+|--++..
T Consensus 27 ~~~D~l~~lGDlVdRGP~s 45 (279)
T TIGR00668 27 PGQDTLWLTGDLVARGPGS 45 (279)
T ss_pred CCCCEEEEeCCccCCCCCH
Confidence 4567899999999887755
No 110
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=40.96 E-value=1.3e+02 Score=38.31 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCc
Q 002605 565 RDSVIIMTHEPNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHY 614 (901)
Q Consensus 565 ~d~VIL~tHeP~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhY 614 (901)
-|-||+++|.-.- .+.... ..+|....+.++ ..|+++++||.|..
T Consensus 310 aDvIIaLsH~G~~-~d~~~~--~~En~~~~LA~v--~GIDaIvgGHsH~~ 354 (814)
T PRK11907 310 ADIVLVLSHSGIG-DDQYEV--GEENVGYQIASL--SGVDAVVTGHSHAE 354 (814)
T ss_pred CCEEEEEeCCCcc-cccccc--cccchhhHHhcC--CCCCEEEECCCCCc
Confidence 4778888887643 222111 122332222332 46999999999974
No 111
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=38.14 E-value=47 Score=36.45 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=57.3
Q ss_pred CCCCcchhHHHHHhhhheeeEecCcHHHHHHHhhccchhhhH-HHHHHHHHHhhcCccccCccCCCccchhHHHHHHHHH
Q 002605 29 YPHEHSRHAIIAVVVGCLFFISSDNMHTLIEKLDNNIKWWSM-YACLLGFFYFFSSPFIGKTITPSYSNFSRWYIAWILV 107 (901)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 107 (901)
+|+||++|+-+..++.+...+..=-+-..+...-.+.-|+.+ .+++.|++.|+=.=+|-.|+..+.....+...
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~----- 82 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQ----- 82 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH-----
Confidence 799999999877665444333222222222222222224443 45566666666555666666555443333222
Q ss_pred HHHhcCccccccccccccchhHHHHHHHHHHHHHHHHH
Q 002605 108 AAVYHLPSFQSMGVDLRMNLSLFLTIFLASVLFLLVFH 145 (901)
Q Consensus 108 a~~~h~p~~~~~g~d~r~~~s~~~~~~~~s~~~l~~~~ 145 (901)
+-.|.=|++.+-+-+|..+-|.+|+
T Consensus 83 -------------~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 83 -------------ALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778888888899988888876
No 112
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=27.64 E-value=1.2e+02 Score=31.11 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=23.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (901)
++.+|- ....+|...++.+.+.+.+..+++..+|+++|+|.
T Consensus 146 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 146 LWILDE-PTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 555563 33456666666666666432233456667777665
No 113
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=25.53 E-value=2.2e+02 Score=30.25 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=41.4
Q ss_pred CCCcEEEeCCCCCCCCChHHHHHHhhcccCCCccc--cCCCcceEEEECCCeEEEEEEecCCCCCCCHHHHHHHHHHHHh
Q 002605 483 DGPQCYIIPGNHDWFDGLNTFMRFICHKSWLGGWF--MPQKKSYFALQLPKGWWVFGLDLALHCDIDVYQFKFFAELVKE 560 (901)
Q Consensus 483 ~gP~vfAIPGNHDWYDGL~aF~R~Fc~r~~lgGW~--mpQ~~SYFAlrLP~~wWLlGLDsql~gdID~~Q~~wF~~ll~~ 560 (901)
.++++.-||||.==|. +.|-+.....-..+. .+..-.||+++.+.. +-+++ +..=..|.+++.+.++.
T Consensus 3 ~g~pVlFIhG~~Gs~~----q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~--~s~~~----g~~l~~q~~~~~~~i~~ 72 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYK----QVRSLASELQRKALLNDNSSHFDFFTVDFNEE--LSAFH----GRTLQRQAEFLAEAIKY 72 (225)
T ss_pred CCCEEEEECcCCCCHh----HHHHHHHHHhhhhhhccCccceeEEEeccCcc--ccccc----cccHHHHHHHHHHHHHH
Confidence 4567999999853222 333332211000000 111234667666553 22222 22223677777776541
Q ss_pred -------hcCCCCeEEEEecC
Q 002605 561 -------QVGERDSVIIMTHE 574 (901)
Q Consensus 561 -------~v~~~d~VIL~tHe 574 (901)
+..+.++||+++|.
T Consensus 73 i~~~~~~~~~~~~~vilVgHS 93 (225)
T PF07819_consen 73 ILELYKSNRPPPRSVILVGHS 93 (225)
T ss_pred HHHhhhhccCCCCceEEEEEc
Confidence 12467899999995
No 114
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=25.52 E-value=60 Score=36.79 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=14.2
Q ss_pred CccEEEEcccccCcCCChhhhhh
Q 002605 422 RGDVLLIGGDLAYPNPSAFTYER 444 (901)
Q Consensus 422 RgdfLVlgGDlvYP~gs~e~Y~~ 444 (901)
..+.+|.+||.+=-++...+..+
T Consensus 34 ~~~~iVfLGDyVDRGPdS~eVld 56 (304)
T cd07421 34 ASALVIFLGDYCDRGPETRKVID 56 (304)
T ss_pred CCcEEEEeCCcCCCCCCHHHHHH
Confidence 45679999996654454433333
No 115
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.43 E-value=1.4e+02 Score=30.27 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=29.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (901)
++.+|- ....+|...++.+.+.+++..+.+..+|++||++.
T Consensus 129 vlllDE-P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 129 ILFLDE-PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 677774 44567888888888877643334678889999875
No 116
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=24.03 E-value=1.2e+02 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=17.5
Q ss_pred CCCeEEEEEeecCCCCCCchHHHHHhcc
Q 002605 379 KEDLWFDFMADTGDGGNSSYSVARLLAQ 406 (901)
Q Consensus 379 d~~~wFd~VaDtGDG~dStYtVArLlAq 406 (901)
+.+-....+|..|.|+ -|..++++.
T Consensus 26 ~~G~~~~l~G~nGsGK---STLl~~i~G 50 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGK---TTLLKLLYG 50 (214)
T ss_pred cCCCEEEEECCCCCCH---HHHHHHHhC
Confidence 3445778888888886 456777764
No 117
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=23.17 E-value=1.6e+02 Score=29.95 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (901)
++.+|- ....+|..-.+.+.+.+.+..+.+..+|+++|+|.
T Consensus 148 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 148 LWILDE-PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred EEEEeC-CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 566663 33445666666666666532233456777777763
No 118
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=22.23 E-value=85 Score=31.40 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.3
Q ss_pred ccCccEEEEcccccCcCC
Q 002605 420 LPRGDVLLIGGDLAYPNP 437 (901)
Q Consensus 420 lPRgdfLVlgGDlvYP~g 437 (901)
.+.+|.|+++||++....
T Consensus 40 ~~~~d~vi~~GDl~~~~~ 57 (168)
T cd07390 40 VGPDDTVYHLGDFSFGGK 57 (168)
T ss_pred cCCCCEEEEeCCCCCCCC
Confidence 345799999999988654
No 119
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=21.86 E-value=2.6e+02 Score=32.78 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred cCCCCeEEEEecC-CCCccccccCccchhhHHHHHhhhhCCceeEEEcCccCCcceeeecCCCCCcccceEEEecCCCCC
Q 002605 562 VGERDSVIIMTHE-PNWLLDWYFNNVSGKNVKHLICDYLKGRCKLRIAGDMHHYMRHSYVPSDGPVYVQHLLVNGCGGAF 640 (901)
Q Consensus 562 v~~~d~VIL~tHe-P~w~~d~~~~~~t~d~l~~Lie~~l~~RV~LvLAGHiHhYqR~~p~~~~G~~~~~~lIVsGGGGAf 640 (901)
..+.|-||+..|+ =.|..+.. +..+.+-++.....++++..+|-|+-|..+... +| .+|+ .+-|.|
T Consensus 221 ~k~adlviv~~HwG~ey~~~p~------~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~-----~~I~-YsLGnf 287 (372)
T COG2843 221 KKGADLVIVQPHWGVEYAYEPA------AGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QG-----KPIL-YSLGNF 287 (372)
T ss_pred hccCCEEEEeccccccccCCCc------HHHHHHHHHHHhcCcCeEecCCCCcCcceEEec-CC-----cEEE-Eeccce
Confidence 4567899999997 56655332 112333334344589999999999999888652 12 2344 777776
Q ss_pred CC
Q 002605 641 LH 642 (901)
Q Consensus 641 LH 642 (901)
+-
T Consensus 288 ~f 289 (372)
T COG2843 288 LF 289 (372)
T ss_pred ec
Confidence 65
No 120
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=21.66 E-value=32 Score=31.98 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=24.2
Q ss_pred cceeeecccccCCCCCCCCccchHHHHHHHHH
Q 002605 250 SKWVIYGELGNDNGGSSDEISPIYSLWATFIG 281 (901)
Q Consensus 250 ~~~~~yg~~~~~~~~~~~~is~~~~~w~t~~~ 281 (901)
++|++|+|+.+++...--.+++|=..|...++
T Consensus 80 p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~ 111 (114)
T PF07717_consen 80 PKWVVYHELVRTSKPYMRDVTAISPEWLLLFA 111 (114)
T ss_dssp -SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred cccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence 46999999999888777788999999987654
No 121
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.53 E-value=1.6e+02 Score=30.37 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCCcc
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNWLL 579 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w~~ 579 (901)
++.||- ....+|....+.+.+.+++..+++..+|+++|++....
T Consensus 158 llllDE-Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 158 LWLLDE-PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred EEEEeC-CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 666674 33556777777777776533344567777888776543
No 122
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=21.38 E-value=57 Score=25.46 Aligned_cols=10 Identities=60% Similarity=1.438 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q 002605 99 RWYIAWILVA 108 (901)
Q Consensus 99 ~~~~~w~~~a 108 (901)
+||.+||+..
T Consensus 1 MWYfaWilG~ 10 (30)
T TIGR02106 1 MWYFAWILGT 10 (30)
T ss_pred ChhHHHHHHH
Confidence 5899998754
No 123
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.19 E-value=1.7e+02 Score=29.47 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=23.3
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPN 576 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~ 576 (901)
++.||- ....+|....+.+.+.+++..+.+..||+++|.+.
T Consensus 148 llllDE-Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 148 VLLLDE-PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEEcC-CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 566663 33446666666666666532233456777777654
No 124
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=20.72 E-value=81 Score=38.31 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=41.0
Q ss_pred HhhhheeeEecCcHHHHHHHh----hccchhhhH---HHHHHHHHHhhcCcc----ccCc-cCCCccchh
Q 002605 41 VVVGCLFFISSDNMHTLIEKL----DNNIKWWSM---YACLLGFFYFFSSPF----IGKT-ITPSYSNFS 98 (901)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~-~~~~~~~f~ 98 (901)
.++..+.....|.++++++.. -+|+-||-+ ++.+....|+.-||+ +|+. .+|.||+||
T Consensus 23 l~~~~~~i~~p~~~~~~~~~~~~~i~~~~GW~yil~~~~~l~f~l~ia~SryG~irLG~~~~~PEfs~~S 92 (537)
T COG1292 23 LALVLLGIRFPDQAETVINAIFSWITNNFGWYYILTVLLFLGFVLYLAFSRYGNIRLGKDDEKPEFSTLS 92 (537)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeccceeEeCCCCCCCCcchhH
Confidence 334445667789998888765 468889754 455555667777887 5654 499999987
No 125
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.52 E-value=61 Score=24.91 Aligned_cols=10 Identities=60% Similarity=1.421 Sum_probs=7.8
Q ss_pred HHHHHHHHHH
Q 002605 99 RWYIAWILVA 108 (901)
Q Consensus 99 ~~~~~w~~~a 108 (901)
+||.+||+..
T Consensus 1 MWYfaWilG~ 10 (28)
T PF08173_consen 1 MWYFAWILGV 10 (28)
T ss_pred ChhHHHHHHH
Confidence 5899998754
No 126
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=20.16 E-value=1.7e+02 Score=29.81 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCeEEEEecCCCC
Q 002605 535 VFGLDLALHCDIDVYQFKFFAELVKEQVGERDSVIIMTHEPNW 577 (901)
Q Consensus 535 LlGLDsql~gdID~~Q~~wF~~ll~~~v~~~d~VIL~tHeP~w 577 (901)
++-||- ....+|...++.+.+.+++-.+.+..+|+++|++..
T Consensus 156 llllDE-P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 156 VMLFDE-PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred EEEEeC-CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 566663 334566666667777665322234567777777653
Done!