BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002606
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 513 YLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISD 570
YL G L ++ ++E + L L NQ++ + + +L L L N + D
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 571 GFLQYMSSLKVLSLSHNEVLFELPSDI-SRLVSLELLDLSNSRIRELPEEL-AALVNLKC 628
G +++L L+L+HN+ L LP + +L +L LDLS ++++ LPE + L LK
Sbjct: 127 GVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 629 LNLEYTFDLAKIPWNLISNFSRLHVLRMFGN 659
L L Y L +P + + L + + N
Sbjct: 186 LRL-YQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 590 LFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFD--LAKIPWNLISN 647
L ELP++I L +L +LDLS++R+ LP EL + LK Y FD + +PW N
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF---YFFDNMVTTLPWEF-GN 314
Query: 648 FSRLHVLRMFGNAI 661
L L + GN +
Sbjct: 315 LCNLQFLGVEGNPL 328
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 513 YLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISD 570
YL G L ++ ++E + L L NQ++ + + +L L L N + D
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 571 GFLQYMSSLKVLSLSHNEVLFELPSDI-SRLVSLELLDLSNSRIRELPEEL-AALVNLKC 628
G +++L L L HN+ L LP + +L +L LDL N++++ LPE + L LK
Sbjct: 127 GVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 629 LNLE 632
L+L
Sbjct: 186 LSLN 189
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 533 VRRLSLMENQIKVIL--GMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVL 590
++L L N++ + R L L+LN+N + G + + +L+ L ++ N+ L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-L 97
Query: 591 FELPSDI-SRLVSLELLDLSNSRIRELPEEL-AALVNLKCLNLEYTFDLAKIPWNLISNF 648
LP + +LV+L L L ++++ LP + +L L L+L Y +L +P +
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKL 156
Query: 649 SRLHVLRMFGNAIR---SGSFD 667
+ L LR++ N ++ G+FD
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFD 178
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 576 MSSLKVLSLSHNEVLFELPSDI-SRLVSLELLDLSNSRIRELPE-ELAALVNLKCLNLEY 633
++ L LSL +NE L LP + +L SL+ L L N++++ +PE L LK L L+
Sbjct: 132 LTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 634 TFDLAKIPWNLISNFSRLHVLRMFGN 659
L ++P + +L +L++ N
Sbjct: 191 N-QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 536 LSLMENQIKVILGMPRCPHLLT----LFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLF 591
L L NQ+K + PR LT L L N + G ++SLK L L +N++
Sbjct: 114 LRLDRNQLKSL--PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 592 ELPSDISRLVSLELLDLSNSRIRELPE-ELAALVNLKCLNLEYTFDLAKIPWNLISN 647
+L L+ L L N++++ +PE +L LK L L+ PW+ N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN------PWDCTCN 222
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 513 YLVYAGAGLTEVQDVREWEKVRRLSL-MENQIKV-------ILGMPRCPHLLTLFLNNNV 564
YL+ + G+ + DV + ++++ L +++ I + +G+ + L+LN N
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNG 165
Query: 565 KLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLE-LLDLSNSRIRELPEELAAL 623
I + + L L+LS N L ELP+D+ S +LD+S +RI LP L
Sbjct: 166 IQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGL 222
Query: 624 VNLKCLNLEYTFDLAKIP 641
NLK L T++L K+P
Sbjct: 223 ENLKKLRARSTYNLKKLP 240
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 553 PHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSR 612
P L L NN I DG + + +L L L +N++ P + LV LE L LS ++
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 613 IRELPEELA-ALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRS-----GSF 666
++ELPE++ L L+ + ++ K+ ++ + +++ V+ + N ++S G+F
Sbjct: 112 LKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 667 DG 668
G
Sbjct: 168 QG 169
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 553 PHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSR 612
P L L NN I DG + + +L L L +N++ P + LV LE L LS ++
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 613 IRELPEELA-ALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRS-----GSF 666
++ELPE++ L L+ + ++ K+ ++ + +++ V+ + N ++S G+F
Sbjct: 112 LKELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 667 DG 668
G
Sbjct: 168 QG 169
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++R
Sbjct: 120 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQIRRIVP--LAR 174
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNF 648
L L+ L LS + I +L L L NL L L ++ + P N SN
Sbjct: 175 LTKLQNLYLSKNHISDL-RALRGLKNLDVLEL-FSQEALNKPINHQSNL 221
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 521 LTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSL 579
+T++ + K+ LSL +NQI+ I+ + R L L+L+ N ISD L+ + +L
Sbjct: 144 ITDITVLSRLTKLDTLSLEDNQIRRIVPLARLTKLQNLYLSKN---HISDLRALRGLKNL 200
Query: 580 KVLSLSHNEVL 590
VL L E L
Sbjct: 201 DVLELFSQEAL 211
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 573 LQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIR-ELPEELAALVNLKCLNL 631
L Y+ +L+ L L N++ E+PS +S +L + LSN+R+ E+P+ + L NL L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 632 EYTFDLAKIPWNL 644
IP L
Sbjct: 519 SNNSFSGNIPAEL 531
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 518 GAG-LTEVQDVREWEKVRRLSLME--NQIKVILGMPRCPHLLTLFLNN------NVKLRI 568
GAG L E Q +R E++ RLS N + G H F NN ++ +
Sbjct: 586 GAGNLLEFQGIRS-EQLNRLSTRNPCNITSRVYGG----HTSPTFDNNGSMMFLDMSYNM 640
Query: 569 SDGFLQ----YMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI-RELPEELAAL 623
G++ M L +L+L HN++ +P ++ L L +LDLS++++ +P+ ++AL
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 624 VNLKCLNLEYTFDLAKIP 641
L ++L IP
Sbjct: 701 TMLTEIDLSNNNLSGPIP 718
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 36/138 (26%)
Query: 576 MSSLKVLSLSHNEVLFELPSDISRL-VSLELLDLS------------------------- 609
M LKVL LS NE ELP ++ L SL LDLS
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 610 --NSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFD 667
N ++P L+ L L+L + + IP +L S S+L L+++ N + +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNML-----E 452
Query: 668 GDELMVKELLGLKHLEVL 685
G+ + +EL+ +K LE L
Sbjct: 453 GE--IPQELMYVKTLETL 468
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 573 LQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIR-ELPEELAALVNLKCLNL 631
L Y+ +L+ L L N++ E+PS +S +L + LSN+R+ E+P+ + L NL L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 632 EYTFDLAKIPWNL 644
IP L
Sbjct: 522 SNNSFSGNIPAEL 534
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 518 GAG-LTEVQDVREWEKVRRLSLME--NQIKVILGMPRCPHLLTLFLNN------NVKLRI 568
GAG L E Q +R E++ RLS N + G H F NN ++ +
Sbjct: 589 GAGNLLEFQGIRS-EQLNRLSTRNPCNITSRVYGG----HTSPTFDNNGSMMFLDMSYNM 643
Query: 569 SDGFLQ----YMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI-RELPEELAAL 623
G++ M L +L+L HN++ +P ++ L L +LDLS++++ +P+ ++AL
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 624 VNLKCLNLEYTFDLAKIP 641
L ++L IP
Sbjct: 704 TMLTEIDLSNNNLSGPIP 721
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 36/138 (26%)
Query: 576 MSSLKVLSLSHNEVLFELPSDISRL-VSLELLDLS------------------------- 609
M LKVL LS NE ELP ++ L SL LDLS
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 610 --NSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFD 667
N ++P L+ L L+L + + IP +L S S+L L+++ N + +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNML-----E 455
Query: 668 GDELMVKELLGLKHLEVL 685
G+ + +EL+ +K LE L
Sbjct: 456 GE--IPQELMYVKTLETL 471
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 558 LFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDI-SRLVSLELLDLSNSRIREL 616
L+L +N + G ++ L VL L N+ L LPS + RLV L+ L + +++ EL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 617 PEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGN 659
P + L +L L L+ L IP S L +FGN
Sbjct: 128 PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDIS 598
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LA 172
Query: 599 RLVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 173 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 513 YLVYAGAGLTEVQDVREWEKVRRLSL-MENQIKV-------ILGMPRCPHLLTLFLNNNV 564
YL+ + G+ + DV + ++++ L +++ I + +G+ + L+LN N
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNG 165
Query: 565 KLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLE-LLDLSNSRIRELPEELAAL 623
I + + L L+LS N L ELP+D+ S +LD+S +RI LP L
Sbjct: 166 IQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGL 222
Query: 624 VNLKCLNLEYTFDLAKIP 641
NLK L T++L K+P
Sbjct: 223 ENLKKLRARSTYNLKKLP 240
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 122 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNF 648
L L+ L LS + I +L LA L NL L L ++ + P N SN
Sbjct: 177 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL-FSQECLNKPINHQSNL 223
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 35/187 (18%)
Query: 521 LTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLK 580
+T+ E + ++ + IK + G+ P++ LFLN N I L + +L
Sbjct: 36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93
Query: 581 VLSLSHNEVLFELP-----------------SDISRLV---SLELLDLSNSRIRELPEEL 620
L L N+V SDI+ LV LE L L N++I ++ L
Sbjct: 94 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVL 152
Query: 621 AALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLK 680
+ L L L+LE N IS+ L L N S + D ++ L GLK
Sbjct: 153 SRLTKLDTLSLED---------NQISDIVPLAGLTKLQNLYLSKNHISD---LRALAGLK 200
Query: 681 HLEVLSF 687
+L+VL
Sbjct: 201 NLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 120 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 174
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNF 648
L L+ L LS + I +L LA L NL L L ++ + P N SN
Sbjct: 175 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL-FSQECLNKPINHQSNL 221
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 140 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 140 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 541 NQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDISR 599
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 140 NGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 194
Query: 600 LVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 195 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDIS 598
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LA 175
Query: 599 RLVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 176 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 573 LQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIR-ELPEE-LAALVNLKCLN 630
L+ +S L+ L+LSHNE L LELLDL+ +R+ P+ L L+ LN
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 631 LEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVK----ELLGLKHLEVLS 686
L Y F L +L++ L L + GN + G+ L+ E+L L +LS
Sbjct: 429 LTYCF-LDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS 487
Query: 687 FTLRSSHAL 695
++ H+L
Sbjct: 488 IDQQAFHSL 496
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 578 SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFD 636
++K L LS+N + + SD+ R V+L+ L L+++ I + E+ ++L +L+ L+L Y +
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111
Query: 637 LAKIPWNLISNFSRLHVLRMFGNAIRS 663
L+ + + S L L + GN ++
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKT 138
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 557 TLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIREL 616
+L L+NN IS+ LQ +L+ L L+ N + S L SLE LDLS + + L
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 617 PEE-LAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDG-DELMVK 674
L +L LNL +L S+ ++L +LR+ G+ D ++ K
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-------GNMDTFTKIQRK 168
Query: 675 ELLGLKHLEVL 685
+ GL LE L
Sbjct: 169 DFAGLTFLEEL 179
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 578 SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFD 636
++K L LS+N + + SD+ R V+L+ L L+++ I + E+ ++L +L+ L+L Y +
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 85
Query: 637 LAKIPWNLISNFSRLHVLRMFGNAIRS 663
L+ + + S L L + GN ++
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKT 112
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISR 599
+N+I+ + G P L TL +NNN RI +G Q + L L L++N L EL D+
Sbjct: 51 DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVEL-GDLDP 108
Query: 600 LVSLELL 606
L SL+ L
Sbjct: 109 LASLKSL 115
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVN-LKCLNLEYTF 635
S++ VL+L+HN++ P++ +R L +LD + I +L EL ++ LK LNL++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHN- 83
Query: 636 DLAKIP---WNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKH 681
+L++I + +N + L ++ + I+S F + ++K L L H
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIK--LDLSH 130
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 64/203 (31%)
Query: 519 AGLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSS 578
GL ++ + + L + N+ V L P LLTL L N +I++G ++
Sbjct: 350 TGLVSLKYLSLSKTFTSLQTLTNETFVSLA--HSP-LLTLNLTKNHISKIANGTFSWLGQ 406
Query: 579 LKVLSLSHNEV--------------LFEL------------------------------- 593
L++L L NE+ +FE+
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 594 ------PSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKI------ 640
PS L +L +LDLSN+ I + E+ L L NL+ L+ ++ +LA++
Sbjct: 467 KNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHN-NLARLWKRANP 525
Query: 641 --PWNLISNFSRLHVLRMFGNAI 661
P N + S LH+L + N +
Sbjct: 526 GGPVNFLKGLSHLHILNLESNGL 548
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDIS 598
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 141 HNGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LA 195
Query: 599 RLVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 196 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 227
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 41/195 (21%)
Query: 514 LVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFL 573
++ + + VQ ++ + L+L NQI I + P++ LFLN N +++D +
Sbjct: 49 IIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGN---KLTD--I 103
Query: 574 QYMSSLKVLS---LSHNEVLFELP-----------------SDISRLV---SLELLDLSN 610
+ +++LK L L N+V SDI+ LV LE L L N
Sbjct: 104 KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 163
Query: 611 SRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDE 670
++I ++ L+ L L L+LE N IS+ L L N S + D
Sbjct: 164 NKITDI-TVLSRLTKLDTLSLED---------NQISDIVPLAGLTKLQNLYLSKNHISD- 212
Query: 671 LMVKELLGLKHLEVL 685
++ L GLK+L+VL
Sbjct: 213 --LRALAGLKNLDVL 225
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDIS 598
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LA 170
Query: 599 RLVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L L+ L LS + I +L LA L NL L L
Sbjct: 171 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 202
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFD 636
+ ++VL L+H ++ + + +L+ + LDLS++R+R LP LAA L+CL + D
Sbjct: 441 ADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVLQASD 495
Query: 637 LAKIPWNLISNFSRLHVLRMFGNAIRSGS 665
A + ++N RL L + N ++ +
Sbjct: 496 NALENVDGVANLPRLQELLLCNNRLQQSA 524
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFD 636
+ ++VL L+H ++ + + +L+ + LDLS++R+R LP LAA L+CL + D
Sbjct: 441 ADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAA---LRCLEVLQASD 495
Query: 637 LAKIPWNLISNFSRLHVLRMFGNAIRSGS 665
A + ++N RL L + N ++ +
Sbjct: 496 NALENVDGVANLPRLQELLLCNNRLQQSA 524
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 567 RISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI-------RELPEE 619
+IS G + L++L++SHN +LF S ++L SL LD S +RI + P+
Sbjct: 482 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 541
Query: 620 LA 621
LA
Sbjct: 542 LA 543
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 567 RISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI-------RELPEE 619
+IS G + L++L++SHN +LF S ++L SL LD S +RI + P+
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546
Query: 620 LA 621
LA
Sbjct: 547 LA 548
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 533 VRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEVL 590
+ R S M +++I P LL+L L+NN R+ D +Q +LK+L+LS NE+
Sbjct: 152 LNRRSSMAATLRII--EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209
Query: 591 FELPSDISRLVSLELLDLSNSRIRE 615
E D + + LE L L + + +
Sbjct: 210 SERELDKIKGLKLEELWLDGNSLSD 234
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 521 LTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLK 580
++++ V++ K++ L++ NQI I + L +LFLNNN + +++L
Sbjct: 255 ISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLT 314
Query: 581 VLSLSHNEVLFELPSDISRLVSLELLD 607
L LS N + +DI L SL D
Sbjct: 315 TLFLSQNHI-----TDIRPLASLSKXD 336
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 26/236 (11%)
Query: 513 YLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-G 571
YL G +T++ + K+ L + N+I I + +L L+LN + ISD
Sbjct: 70 YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED---NISDIS 126
Query: 572 FLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL 631
L ++ L+L N L +L S +S L L ++ S+++++ +A L +L L+L
Sbjct: 127 PLANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDV-TPIANLTDLYSLSL 184
Query: 632 EYTF--DLAKIPWNLISNFSRLHVLRMFGNAI----------RSGSFDGDELMVKELLGL 679
Y D++ +++ + LH + N I R S + +L L
Sbjct: 185 NYNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPL 239
Query: 680 KHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRL 735
+L L++ ++ + + ++ T+ L+ + D+S L +L QLN L
Sbjct: 240 ANLSQLTWLEIGTNQISDI---NAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSL 292
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 34/229 (14%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLN--- 630
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ + +L+ L+
Sbjct: 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMP 200
Query: 631 -LEYTFDLAKIPWNLISNFS----RLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVL 685
L + DL+ P N I + RLH L + N FD +M + GL LEV
Sbjct: 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN------FDSLNVMKTCIQGLAGLEVH 254
Query: 686 SFTL---RSSHALKSFLTSHQLRSCTQALLLHCFKDSSLD--VSGLADLKQLNRLRIADC 740
L R+ L+ F S C L + F+ + LD + G+ DL N L
Sbjct: 255 RLVLGEFRNEGNLEKFDKSALEGLCN--LTIEEFRLAYLDYYLDGIIDL--FNCLTNVSS 310
Query: 741 PELVELKID-YKGEAQQFCFQSLRVVVIDL----CIGLKDLTFLVFASN 784
LV + I+ K + F +Q L +V + LK L L F SN
Sbjct: 311 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 359
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 575 YMSSLKVLSLSHNEVL-FELPSDISRLVSLELLDLSNSRIREL 616
++ +LK L+++HN + F+LP S L +LE LDLS+++I+ +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 546 ILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLEL 605
LG+ + HL F ++N+K + +L L +SH + L SLE+
Sbjct: 392 FLGLEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 606 LDLSNSRIRE--LPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRS 663
L ++ + +E LP+ L NL L+L L ++ ++ S L VL M N ++S
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 664 ---GSFD 667
G FD
Sbjct: 509 VPDGIFD 515
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 83/384 (21%)
Query: 520 GLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSS 578
G+ + V + +++ NQ+ I + L+ + +NNN +I+D L +++
Sbjct: 52 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTN 108
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL-EYTFDL 637
L L+L +N++ P + L +L L+LS++ I ++ L+ L +L+ LN DL
Sbjct: 109 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDL 165
Query: 638 AKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKS 697
++N + L L + N + + L L +LE L
Sbjct: 166 KP-----LANLTTLERLDISSNKVSD---------ISVLAKLTNLESL------------ 199
Query: 698 FLTSHQLRSCTQALLLHCFKDSSL------DVSGLADLKQLNRLRIAD------CP---- 741
T++Q+ T +L + SL D+ LA L L L +A+ P
Sbjct: 200 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 259
Query: 742 -ELVELKIDYKGEAQQFCFQSLRVVV-----------IDLCIGLKDLTFL-VFASNLKSI 788
+L ELK+ + L + I LK+LT+L ++ +N+ I
Sbjct: 260 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319
Query: 789 EVRSC--------FAMEDIISVGKFADFPEV---------MANLNPFAKLQYLQLAGLPN 831
S F+ + V A+ + +++L P A L + G
Sbjct: 320 SPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG--- 376
Query: 832 LKSIYWKPLPFSHLKEMSVFNCDK 855
L W P ++ +S+ N K
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVK 400
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 593 LPSDISRLVSLELLDLSNSRIRELP-EELAALVNLKCLNLEYTFDLAKIPWNLISNFSRL 651
+P ++S L L+DLSN+RI L + + + L L L Y L IP L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSL 104
Query: 652 HVLRMFGNAIR---SGSFDGDELMVKELLGLKHLEV 684
+L + GN I G+F+ +L L HL +
Sbjct: 105 RLLSLHGNDISVVPEGAFN-------DLSALSHLAI 133
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 554 HLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI 613
HL + L+NN +S+ M+ L L LS+N + P L SL LL L + I
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 614 RELPE----ELAALVNL 626
+PE +L+AL +L
Sbjct: 115 SVVPEGAFNDLSALSHL 131
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 558 LFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVL---FELPSDISRLVSLELLDLSNSRIR 614
L L NN + + + M+ L+ L LS N++ EL D ++L L LLDLS+++++
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 615 ELP 617
+LP
Sbjct: 177 KLP 179
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFELPSDIS 598
N I I G+ P L +L+L NN +I+D L ++ L LSL N++ +P ++
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP--LA 170
Query: 599 RLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNF 648
L L+ L LS + I +L L L NL L L ++ + P N SN
Sbjct: 171 CLTKLQNLYLSKNHISDL-RALCGLKNLDVLEL-FSQEALNKPINHQSNL 218
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 518 GAGLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMS 577
G G+T ++ V+ + L L +NQI + + + L L+ N +S + +
Sbjct: 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQ 107
Query: 578 SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL--EYTF 635
S+K L L+ ++ P ++ L +L++L L ++I + LA L NL+ L++
Sbjct: 108 SIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVS 164
Query: 636 DLAKIPWNLISNFSRLHVLRMFGNAIR 662
DL ++N S+L L+ N I
Sbjct: 165 DLTP-----LANLSKLTTLKADDNKIS 186
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 83/384 (21%)
Query: 520 GLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSS 578
G+ + V + +++ NQ+ I + L+ + +NNN +I+D L +++
Sbjct: 56 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTN 112
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL-EYTFDL 637
L L+L +N++ P + L +L L+LS++ I ++ L+ L +L+ L+ DL
Sbjct: 113 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDL 169
Query: 638 AKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKS 697
++N + L L + N + + L L +LE L
Sbjct: 170 KP-----LANLTTLERLDISSNKVSD---------ISVLAKLTNLESL------------ 203
Query: 698 FLTSHQLRSCTQALLLHCFKDSSL------DVSGLADLKQLNRLRIAD------CP---- 741
T++Q+ T +L + SL D+ LA L L L +A+ P
Sbjct: 204 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 263
Query: 742 -ELVELKIDYKGEAQQFCFQSLRVVV-----------IDLCIGLKDLTFL-VFASNLKSI 788
+L ELK+ + L + I LK+LT+L ++ +N+ I
Sbjct: 264 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 323
Query: 789 EVRSC--------FAMEDIISVGKFADFPEV---------MANLNPFAKLQYLQLAGLPN 831
S FA + V A+ + +++L P A L + G
Sbjct: 324 SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG--- 380
Query: 832 LKSIYWKPLPFSHLKEMSVFNCDK 855
L W P ++ +S+ N K
Sbjct: 381 LNDQAWTNAPVNYKANVSIPNTVK 404
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 525 QDVREWEKVRRLSLMENQIKVILGMPRC-------PHLLTLFLNNNVKLRISDGFLQYMS 577
Q E + +L L EN +++ C HL L+LN+N + G +++
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504
Query: 578 SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYT 634
+L+ LSL+ N + +D+ +LE+LD+S +++ L V+L L++ +
Sbjct: 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL--LAPNPDVFVSLSVLDITHN 557
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 520 GLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSL 579
G+T ++ ++ + L L +NQI + + + L L+ N +S + + S+
Sbjct: 58 GVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA--IAGLQSI 115
Query: 580 KVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL--EYTFDL 637
K L L+ ++ P ++ L +L++L L ++I + LA L NL+ L++ DL
Sbjct: 116 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNNQVNDL 172
Query: 638 AKIPWNLISNFSRLHVLRMFGNAI 661
++N S+L LR N I
Sbjct: 173 TP-----LANLSKLTTLRADDNKI 191
>pdb|2B0T|A Chain A, Structure Of Monomeric Nadp Isocitrate Dehydrogenase
pdb|3MBC|A Chain A, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
pdb|3MBC|B Chain B, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
Length = 738
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 661 IRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHC-FKDS 719
I+ + DG E ++K+ L L EVL T+ S+ AL +FL R+ + +L K +
Sbjct: 196 IKHIAADGTETILKDSLKLLEGEVLDGTVLSAKALDAFLLEQVARAKAEGILFSAHLKAT 255
Query: 720 SLDVSGLADLKQLNRLRIADC 740
+ VS + R AD
Sbjct: 256 MMKVSDPIIFGHVVRAYFADV 276
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 83/384 (21%)
Query: 520 GLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSS 578
G+ + V + +++ NQ+ I + L+ + +NNN +I+D L +++
Sbjct: 52 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTN 108
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNL-EYTFDL 637
L L+L +N++ P + L +L L+LS++ I ++ L+ L +L+ LN DL
Sbjct: 109 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDL 165
Query: 638 AKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKS 697
++N + L L + N + + L L +LE L
Sbjct: 166 KP-----LANLTTLERLDISSNKVSD---------ISVLAKLTNLESL------------ 199
Query: 698 FLTSHQLRSCTQALLLHCFKDSSL------DVSGLADLKQLNRLRIAD------CP---- 741
T++Q+ T +L + SL D+ LA L L L +A+ P
Sbjct: 200 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 259
Query: 742 -ELVELKIDYKGEAQQFCFQSLRVVV-----------IDLCIGLKDLTFL-VFASNLKSI 788
+L ELK+ + L + I LK+LT+L ++ +N+ I
Sbjct: 260 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 319
Query: 789 EVRSC--------FAMEDIISVGKFADFPEV---------MANLNPFAKLQYLQLAGLPN 831
S F + V A+ + +++L P A L + G
Sbjct: 320 SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG--- 376
Query: 832 LKSIYWKPLPFSHLKEMSVFNCDK 855
L W P ++ +S+ N K
Sbjct: 377 LNDQAWTNAPVNYKANVSIPNTVK 400
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 75/182 (41%), Gaps = 36/182 (19%)
Query: 532 KVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEV 589
+ R L L +N+IK + PHL L LN N+ + G + +L+ L L N +
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 590 LFELPSDISRLVSLELLDLSNSRIRELPEEL-AALVNLKCL-----NLEYTF-------- 635
+ L +L LD+S ++I L + + L NLK L +L Y
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 636 ----------DLAKIPWNLISNFSRLHVLRMFG---NAIRSGSFDGDELMVKELLGLKHL 682
+L IP +S+ L VLR+ NAIR SF K L LK L
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-------KRLYRLKVL 205
Query: 683 EV 684
E+
Sbjct: 206 EI 207
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 147/385 (38%), Gaps = 84/385 (21%)
Query: 520 GLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISD-GFLQYMSS 578
G+ + V + +++ NQ+ I + L+ + +NNN +I+D L +++
Sbjct: 52 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN---QIADITPLANLTN 108
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYT--FD 636
L L+L +N++ P + L +L L+LS++ I ++ L+ L +L+ LN D
Sbjct: 109 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTD 165
Query: 637 LAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALK 696
L ++N + L L + N + + L L +LE L
Sbjct: 166 LKP-----LANLTTLERLDISSNKVSD---------ISVLAKLTNLESL----------- 200
Query: 697 SFLTSHQLRSCTQALLLHCFKDSSL------DVSGLADLKQLNRLRIAD------CP--- 741
T++Q+ T +L + SL D+ LA L L L +A+ P
Sbjct: 201 -IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259
Query: 742 --ELVELKIDYKGEAQQFCFQSLRVVV-----------IDLCIGLKDLTFL-VFASNLKS 787
+L ELK+ + L + I LK+LT+L ++ +N+
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 319
Query: 788 IEVRSC--------FAMEDIISVGKFADFPEV---------MANLNPFAKLQYLQLAGLP 830
I S F + V A+ + +++L P A L + G
Sbjct: 320 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG-- 377
Query: 831 NLKSIYWKPLPFSHLKEMSVFNCDK 855
L W P ++ +S+ N K
Sbjct: 378 -LNDQAWTNAPVNYKANVSIPNTVK 401
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 553 PHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEVLFE 592
P LL+L L+NN R+ D +Q +LK+L+LS NE+ E
Sbjct: 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 553 PHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELL 606
P LL+L L+NN R+ D +Q +LK+L+LS NE+ E D + + LE L
Sbjct: 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 353 EILELARTVAKECGGLPLALITIGRAMACKKRPEEWKYAIEVLRT 397
++ E A ++ KEC G PL + IG + + P W+Y ++ L+
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQN 353
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 553 PHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEVLFE 592
P LL+L L+NN R+ D +Q +LK+L+LS NE+ E
Sbjct: 164 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 205
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFD 636
++ ++L+L N++ + L LE+L LS + IR + E+ A L LN FD
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFD 121
Query: 637 --LAKIPWNLISNFSRLHVLRMFGNAIRS-GSFDGDELMVKELLGLKHLEVLSF 687
L IP S+L L + N I S S+ + + L L L+ LS+
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 553 PHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEVLFE 592
P LL+L L+NN R+ D +Q +LK+L+LS NE+ E
Sbjct: 164 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 205
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 568 ISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLK 627
+SD + ++ L L+L +N++ L L L L+N+++ LP L +L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLT 107
Query: 628 CLNLEY--TFDLAKIPWNLISNFSRLHVLRMFGNAIRS---GSFD 667
L+ Y L +P + ++L LR+ N ++S G+FD
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 568 ISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLK 627
+SD + ++ L L+L +N++ L L L L+N+++ LP L +L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--LGVFDHLT 107
Query: 628 CLNLEY--TFDLAKIPWNLISNFSRLHVLRMFGNAIRS---GSFD 667
L+ Y L +P + ++L LR+ N ++S G+FD
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 577 SSLKVLSLSHNEVLFELP-SDISRLVSLELLDLSNSRIREL-PEELAALVNLKCLNLEYT 634
+++ VL+L+HN+ L LP ++ +R L LD+ + I +L PE L LK LNL++
Sbjct: 25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 635 --FDLAKIPWNLISNFSRLHVLRMFGNAIRSGSF 666
L+ + +N + LH++ I++ F
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 356 ELARTVAKECGGLPLALITIGRAMACKKRPEEWKYAIEVLRT 397
E A ++ KEC G PL + IG + + P W+Y ++ L+
Sbjct: 308 EQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQN 347
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 519 AGLTEVQDVREWEKVRRLSLMENQIKVI--LGMPRCPHLLTLFLNNNVKLRISDGFLQYM 576
A LT++Q + L L NQ++ + LG P L L ++ N + G L+ +
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLE 632
L+ L L NE+ P ++ LE L L+N+ + ELP L L NL L L+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 519 AGLTEVQDVREWEKVRRLSLMENQIKVI--LGMPRCPHLLTLFLNNNVKLRISDGFLQYM 576
A LT++Q + L L NQ++ + LG P L L ++ N + G L+ +
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLE 632
L+ L L NE+ P ++ LE L L+N+ + ELP L L NL L L+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 519 AGLTEVQDVREWEKVRRLSLMENQIKVI--LGMPRCPHLLTLFLNNNVKLRISDGFLQYM 576
A LT++Q + L L NQ++ + LG P L L ++ N + G L+ +
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLE 632
L+ L L NE+ P ++ LE L L+N+ + ELP L L NL L L+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 577 SSLKVLSLSHNEVLFELP-SDISRLVSLELLDLSNSRIREL-PEELAALVNLKCLNLEYT 634
+++ VL+L+HN+ L LP ++ +R L LD+ + I +L PE L LK LNL++
Sbjct: 30 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 635 --FDLAKIPWNLISNFSRLHVLRMFGNAIRSGSF 666
L+ + +N + LH++ I++ F
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 122
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 34/121 (28%)
Query: 554 HLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDI-SRLVSLELLDLSNSR 612
HL L L NN +I + + L+ L +S N L E+P ++ S LV L + D +R
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHD---NR 134
Query: 613 IRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRS-----GSFD 667
IR K+P + S ++ + M GN + + G+FD
Sbjct: 135 IR------------------------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 668 G 668
G
Sbjct: 171 G 171
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 521 LTEVQDVREWEKVRRLSLMENQIKVI--LGMPRCPHLLTLFLNNNVKLRISDGFLQYMSS 578
LT++Q + L L NQ++ + LG P L L ++ N + G L+ +
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLE 632
L+ L L NE+ P ++ LE L L+N+++ ELP L L NL L L+
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 577 SSLKVLSLSHNEVLFELP-SDISRLVSLELLDLSNSRIREL-PEELAALVNLKCLNLEYT 634
+++ VL+L+HN+ L LP ++ +R L LD+ + I +L PE L LK LNL++
Sbjct: 35 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 635 --FDLAKIPWNLISNFSRLHVLRMFGNAIRSGSF 666
L+ + +N + LH++ I++ F
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 521 LTEVQDVREWEKVRRLSLMENQIKVI--LGMPRCPHLLTLFLNNNVKLRISDGFLQYMSS 578
LT++Q + L L NQ++ + LG P L L ++ N + G L+ +
Sbjct: 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 579 LKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLE 632
L+ L L NE+ P ++ LE L L+N+++ ELP L L NL L L+
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQ 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,700,624
Number of Sequences: 62578
Number of extensions: 973873
Number of successful extensions: 2306
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2099
Number of HSP's gapped (non-prelim): 244
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)