Query 002606
Match_columns 901
No_of_seqs 565 out of 4120
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-100 3E-105 897.2 53.2 843 14-895 9-884 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-64 1.9E-68 621.8 52.7 639 153-864 184-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.4E-45 1.2E-49 390.0 17.1 280 158-458 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.5E-21 3.3E-26 244.4 18.3 307 529-852 116-437 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.5E-21 1.4E-25 238.8 17.9 310 528-860 137-469 (968)
6 KOG0444 Cytoskeletal regulator 99.8 3.8E-23 8.2E-28 219.3 -3.8 353 512-887 35-405 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2.5E-21 5.5E-26 204.7 3.8 307 521-854 114-427 (873)
8 KOG4194 Membrane glycoprotein 99.8 9.7E-21 2.1E-25 200.3 4.3 308 527-866 98-428 (873)
9 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 5E-26 205.9 -2.9 293 525-850 97-393 (1255)
10 PLN03210 Resistant to P. syrin 99.8 4E-18 8.6E-23 213.5 20.5 306 518-859 598-946 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 5.8E-19 1.3E-23 179.2 -3.7 310 529-854 181-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.3E-17 7.1E-22 166.6 -8.5 244 526-794 63-308 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 4.5E-14 9.8E-19 164.0 14.9 253 511-829 203-455 (788)
14 KOG0617 Ras suppressor protein 99.5 1.8E-16 4E-21 142.6 -3.7 163 523-697 25-190 (264)
15 KOG0618 Serine/threonine phosp 99.5 6.3E-16 1.4E-20 173.3 -0.8 101 532-634 46-147 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 8.1E-14 1.8E-18 161.9 14.4 255 532-854 202-456 (788)
17 KOG0618 Serine/threonine phosp 99.5 2.6E-15 5.6E-20 168.4 -2.0 128 530-664 198-325 (1081)
18 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.3E-18 159.9 11.6 117 532-661 200-316 (754)
19 KOG0617 Ras suppressor protein 99.4 5.7E-15 1.2E-19 133.1 -2.5 143 543-696 23-166 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 4.3E-13 9.3E-18 157.1 10.3 246 532-829 179-425 (754)
21 KOG4237 Extracellular matrix p 99.4 1.3E-14 2.8E-19 147.9 -2.3 277 513-799 50-337 (498)
22 KOG4658 Apoptotic ATPase [Sign 99.4 5.7E-13 1.2E-17 158.5 7.1 314 520-862 534-866 (889)
23 PRK04841 transcriptional regul 99.3 1.1E-10 2.3E-15 146.1 24.5 290 153-503 14-332 (903)
24 PRK00411 cdc6 cell division co 99.3 6.3E-10 1.4E-14 124.6 25.7 297 152-484 29-358 (394)
25 TIGR03015 pepcterm_ATPase puta 99.2 3.6E-09 7.7E-14 111.9 23.8 184 172-379 41-242 (269)
26 PF01637 Arch_ATPase: Archaeal 99.2 5.8E-11 1.3E-15 122.9 9.3 197 155-374 1-233 (234)
27 TIGR02928 orc1/cdc6 family rep 99.2 1.7E-08 3.7E-13 111.9 28.3 302 153-484 15-350 (365)
28 KOG4237 Extracellular matrix p 99.1 4E-12 8.7E-17 130.0 -1.3 237 526-771 86-357 (498)
29 COG2909 MalT ATP-dependent tra 99.1 3.9E-09 8.4E-14 119.4 18.8 287 154-503 20-338 (894)
30 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4E-15 109.9 4.7 140 540-688 6-148 (175)
31 PRK00080 ruvB Holliday junctio 99.0 5.1E-09 1.1E-13 113.5 14.9 273 153-484 25-310 (328)
32 cd00116 LRR_RI Leucine-rich re 99.0 6.2E-11 1.3E-15 129.1 -0.2 128 532-661 24-177 (319)
33 TIGR00635 ruvB Holliday juncti 99.0 2.2E-08 4.7E-13 107.9 19.1 265 153-484 4-289 (305)
34 cd00116 LRR_RI Leucine-rich re 98.9 1.6E-10 3.4E-15 125.9 0.6 138 550-692 20-177 (319)
35 PF05729 NACHT: NACHT domain 98.9 6.6E-09 1.4E-13 101.0 11.6 142 175-343 1-163 (166)
36 COG2256 MGS1 ATPase related to 98.8 3.5E-08 7.6E-13 102.7 13.5 167 154-372 31-209 (436)
37 PF14580 LRR_9: Leucine-rich r 98.8 6.2E-09 1.3E-13 99.5 6.5 130 525-658 13-149 (175)
38 PRK06893 DNA replication initi 98.8 5.2E-08 1.1E-12 99.4 13.3 154 173-377 38-205 (229)
39 KOG0532 Leucine-rich repeat (L 98.8 2.9E-10 6.2E-15 121.9 -3.3 121 535-660 79-200 (722)
40 COG3899 Predicted ATPase [Gene 98.8 7.7E-08 1.7E-12 115.7 16.6 310 155-500 2-383 (849)
41 KOG0532 Leucine-rich repeat (L 98.8 2.3E-10 5E-15 122.6 -4.4 188 536-741 55-245 (722)
42 PTZ00112 origin recognition co 98.7 2.1E-06 4.5E-11 98.5 22.2 208 152-379 754-986 (1164)
43 PRK13342 recombination factor 98.7 2.5E-07 5.5E-12 103.3 14.6 176 153-377 12-198 (413)
44 TIGR03420 DnaA_homol_Hda DnaA 98.6 4.1E-07 8.9E-12 93.4 13.6 170 158-378 22-204 (226)
45 KOG1259 Nischarin, modulator o 98.6 8.1E-09 1.8E-13 102.1 0.3 131 528-663 281-413 (490)
46 COG4886 Leucine-rich repeat (L 98.6 4.9E-08 1.1E-12 109.5 5.0 121 536-660 98-220 (394)
47 TIGR02903 spore_lon_C ATP-depe 98.5 1.2E-05 2.6E-10 93.8 24.4 202 153-378 154-398 (615)
48 KOG2028 ATPase related to the 98.5 2.1E-06 4.6E-11 87.6 15.4 162 165-370 153-331 (554)
49 PRK05564 DNA polymerase III su 98.5 2.3E-06 5.1E-11 92.1 16.6 177 154-375 5-190 (313)
50 KOG1259 Nischarin, modulator o 98.5 1.1E-08 2.3E-13 101.3 -1.6 133 550-694 281-413 (490)
51 KOG3207 Beta-tubulin folding c 98.5 3.6E-08 7.8E-13 103.0 2.0 209 550-792 118-335 (505)
52 PRK07003 DNA polymerase III su 98.5 4.6E-06 1E-10 95.4 18.5 183 153-377 16-223 (830)
53 KOG3207 Beta-tubulin folding c 98.5 4E-08 8.6E-13 102.7 1.7 161 529-696 119-287 (505)
54 PRK08727 hypothetical protein; 98.5 2.2E-06 4.8E-11 87.6 14.2 168 155-372 22-201 (233)
55 PF13173 AAA_14: AAA domain 98.5 3.2E-07 7E-12 84.4 6.9 120 174-335 2-127 (128)
56 cd01128 rho_factor Transcripti 98.4 4.2E-07 9.1E-12 92.8 7.7 100 165-267 6-114 (249)
57 PTZ00202 tuzin; Provisional 98.4 4.4E-05 9.6E-10 81.5 22.1 159 152-343 261-434 (550)
58 KOG4341 F-box protein containi 98.4 1.2E-08 2.5E-13 106.0 -4.3 107 553-659 138-252 (483)
59 PRK04195 replication factor C 98.4 9.7E-06 2.1E-10 92.6 18.8 181 153-380 14-207 (482)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4.1E-11 81.7 11.0 58 156-216 1-58 (151)
61 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.8E-12 72.3 3.9 60 553-613 1-61 (61)
62 COG4886 Leucine-rich repeat (L 98.4 2.7E-07 5.9E-12 103.5 5.5 157 527-695 112-270 (394)
63 PRK08084 DNA replication initi 98.4 6.5E-06 1.4E-10 84.3 14.9 172 154-376 24-210 (235)
64 PRK12402 replication factor C 98.4 5.4E-06 1.2E-10 90.9 14.9 194 153-374 15-225 (337)
65 PLN03150 hypothetical protein; 98.4 7.4E-07 1.6E-11 104.8 8.2 106 554-660 419-526 (623)
66 PRK14949 DNA polymerase III su 98.4 8.7E-06 1.9E-10 95.1 16.6 180 153-375 16-220 (944)
67 PRK14961 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.4 17.3 190 153-373 16-218 (363)
68 PF13855 LRR_8: Leucine rich r 98.3 2.9E-07 6.2E-12 72.1 2.6 57 602-659 2-59 (61)
69 PRK14960 DNA polymerase III su 98.3 2.7E-05 5.8E-10 88.4 18.8 180 153-374 15-218 (702)
70 PRK12323 DNA polymerase III su 98.3 1E-05 2.2E-10 91.4 15.3 178 153-375 16-225 (700)
71 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.6E-11 81.2 6.8 94 173-268 3-99 (131)
72 COG1474 CDC6 Cdc6-related prot 98.3 7.2E-05 1.6E-09 81.1 21.1 200 153-374 17-237 (366)
73 PRK09087 hypothetical protein; 98.3 9.2E-06 2E-10 82.3 13.4 141 173-376 43-196 (226)
74 PRK13341 recombination factor 98.3 5.4E-06 1.2E-10 97.4 12.9 165 154-370 29-212 (725)
75 PF13191 AAA_16: AAA ATPase do 98.3 1.5E-06 3.2E-11 86.2 6.8 45 154-198 1-48 (185)
76 PRK14963 DNA polymerase III su 98.3 2.1E-05 4.6E-10 89.1 16.7 191 153-372 14-214 (504)
77 PLN03025 replication factor C 98.3 1.4E-05 2.9E-10 86.4 14.5 180 153-372 13-197 (319)
78 PRK00440 rfc replication facto 98.3 2.2E-05 4.8E-10 85.3 16.3 179 153-373 17-201 (319)
79 PRK07471 DNA polymerase III su 98.2 4.4E-05 9.5E-10 83.0 17.5 194 153-376 19-239 (365)
80 PRK09376 rho transcription ter 98.2 1.7E-06 3.7E-11 91.8 6.2 99 164-266 158-266 (416)
81 PRK05642 DNA replication initi 98.2 2.6E-05 5.7E-10 79.8 14.3 151 175-376 46-209 (234)
82 PRK14957 DNA polymerase III su 98.2 3.8E-05 8.3E-10 87.1 16.5 183 153-377 16-223 (546)
83 PRK14962 DNA polymerase III su 98.2 3.9E-05 8.5E-10 86.2 16.5 186 153-379 14-223 (472)
84 PRK14956 DNA polymerase III su 98.2 4.2E-05 9E-10 84.4 16.0 194 153-372 18-219 (484)
85 PF00308 Bac_DnaA: Bacterial d 98.2 3.3E-05 7.3E-10 78.0 14.2 181 153-373 9-206 (219)
86 PRK06645 DNA polymerase III su 98.2 6.3E-05 1.4E-09 84.9 17.7 193 153-372 21-226 (507)
87 PRK07940 DNA polymerase III su 98.1 6.3E-05 1.4E-09 82.5 16.8 172 153-375 5-213 (394)
88 PLN03150 hypothetical protein; 98.1 5.3E-06 1.1E-10 97.6 8.8 110 532-641 419-532 (623)
89 TIGR01242 26Sp45 26S proteasom 98.1 2E-05 4.3E-10 86.8 12.8 187 153-369 122-328 (364)
90 TIGR02397 dnaX_nterm DNA polym 98.1 7.5E-05 1.6E-09 82.5 17.5 182 153-376 14-219 (355)
91 KOG4341 F-box protein containi 98.1 1.4E-07 3E-12 98.2 -4.0 103 532-634 139-252 (483)
92 PRK08691 DNA polymerase III su 98.1 3.2E-05 7E-10 88.6 14.2 179 153-374 16-219 (709)
93 PRK05896 DNA polymerase III su 98.1 5.7E-05 1.2E-09 85.7 15.8 195 153-377 16-223 (605)
94 PRK07994 DNA polymerase III su 98.1 3.6E-05 7.9E-10 88.6 14.4 193 153-375 16-220 (647)
95 PF05496 RuvB_N: Holliday junc 98.1 2.8E-05 6E-10 76.2 11.4 188 153-379 24-225 (233)
96 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 73.0 15.5 160 164-371 3-187 (188)
97 PRK08903 DnaA regulatory inact 98.1 4.9E-05 1.1E-09 77.9 13.3 169 156-379 22-203 (227)
98 PRK14958 DNA polymerase III su 98.1 6.1E-05 1.3E-09 85.6 15.1 181 153-374 16-219 (509)
99 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.6E-12 94.1 -5.8 58 602-660 186-245 (419)
100 PRK14964 DNA polymerase III su 98.1 0.00011 2.4E-09 82.2 16.7 179 153-372 13-214 (491)
101 PRK14951 DNA polymerase III su 98.1 8.4E-05 1.8E-09 85.6 16.2 196 153-375 16-225 (618)
102 KOG0531 Protein phosphatase 1, 98.0 6.2E-07 1.3E-11 100.7 -1.4 106 549-660 91-197 (414)
103 PRK14955 DNA polymerase III su 98.0 4.9E-05 1.1E-09 84.5 13.4 197 153-373 16-226 (397)
104 KOG0531 Protein phosphatase 1, 98.0 1.3E-06 2.8E-11 98.2 0.8 129 527-662 91-221 (414)
105 KOG1859 Leucine-rich repeat pr 98.0 2.2E-07 4.9E-12 102.7 -5.4 129 529-662 162-292 (1096)
106 TIGR00767 rho transcription te 98.0 1.8E-05 4E-10 84.6 8.9 93 172-266 166-265 (415)
107 PRK09112 DNA polymerase III su 98.0 7.3E-05 1.6E-09 80.8 13.6 197 153-376 23-241 (351)
108 PRK14970 DNA polymerase III su 98.0 0.00016 3.6E-09 79.9 16.7 179 153-372 17-206 (367)
109 PRK14959 DNA polymerase III su 98.0 0.00027 5.8E-09 80.9 18.4 196 153-379 16-225 (624)
110 KOG1909 Ran GTPase-activating 98.0 1.4E-06 3.1E-11 88.9 0.2 43 647-692 155-197 (382)
111 PRK14969 DNA polymerase III su 98.0 0.00011 2.5E-09 84.0 15.3 182 153-375 16-221 (527)
112 KOG2120 SCF ubiquitin ligase, 98.0 3.2E-07 6.9E-12 91.1 -4.9 85 577-662 185-273 (419)
113 COG3903 Predicted ATPase [Gene 98.0 1.8E-05 3.9E-10 83.6 7.7 289 173-503 13-314 (414)
114 KOG1859 Leucine-rich repeat pr 98.0 4E-07 8.6E-12 100.8 -4.9 159 520-691 98-290 (1096)
115 PRK09111 DNA polymerase III su 97.9 0.00016 3.5E-09 83.5 15.9 195 153-375 24-233 (598)
116 TIGR02880 cbbX_cfxQ probable R 97.9 0.00026 5.7E-09 74.6 15.9 155 154-346 23-211 (284)
117 PRK07764 DNA polymerase III su 97.9 0.00023 5.1E-09 85.0 16.7 173 153-372 15-218 (824)
118 PRK14087 dnaA chromosomal repl 97.9 0.00011 2.3E-09 82.6 13.1 167 175-377 142-321 (450)
119 PRK03992 proteasome-activating 97.9 0.00017 3.6E-09 79.8 14.3 175 153-369 131-337 (389)
120 TIGR02881 spore_V_K stage V sp 97.9 0.00014 3E-09 76.1 13.0 45 154-198 7-66 (261)
121 CHL00181 cbbX CbbX; Provisiona 97.9 0.0003 6.5E-09 74.1 15.4 155 154-346 24-212 (287)
122 PRK14952 DNA polymerase III su 97.9 0.00034 7.3E-09 80.4 17.0 186 153-380 13-225 (584)
123 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 56.9 4.0 39 578-617 2-40 (44)
124 PRK11331 5-methylcytosine-spec 97.9 0.00011 2.3E-09 80.3 11.6 69 153-224 175-243 (459)
125 PF05621 TniB: Bacterial TniB 97.9 0.00031 6.7E-09 72.3 14.3 197 154-372 35-258 (302)
126 PF14516 AAA_35: AAA-like doma 97.8 0.00099 2.1E-08 72.0 19.0 210 152-381 10-245 (331)
127 PRK14950 DNA polymerase III su 97.8 0.00044 9.6E-09 80.7 17.2 193 153-375 16-221 (585)
128 PRK14954 DNA polymerase III su 97.8 0.00051 1.1E-08 79.5 17.3 199 153-375 16-229 (620)
129 PRK06620 hypothetical protein; 97.8 0.00028 6.1E-09 70.9 13.4 68 302-372 112-186 (214)
130 PRK14971 DNA polymerase III su 97.8 0.00041 8.9E-09 80.8 16.5 178 153-372 17-219 (614)
131 KOG2982 Uncharacterized conser 97.8 5.9E-06 1.3E-10 82.4 0.9 81 551-634 69-156 (418)
132 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.6E-10 56.8 3.0 41 601-642 1-41 (44)
133 KOG2543 Origin recognition com 97.8 0.00017 3.7E-09 75.0 11.0 115 152-272 5-131 (438)
134 TIGR00362 DnaA chromosomal rep 97.8 0.00055 1.2E-08 76.7 16.2 158 175-372 137-307 (405)
135 PRK14088 dnaA chromosomal repl 97.8 0.00029 6.4E-09 79.0 13.9 179 154-372 107-302 (440)
136 PRK08451 DNA polymerase III su 97.8 0.00065 1.4E-08 76.9 16.4 182 153-375 14-218 (535)
137 PRK07133 DNA polymerase III su 97.8 0.00071 1.5E-08 78.7 17.0 185 153-373 18-217 (725)
138 PRK14948 DNA polymerase III su 97.8 0.00077 1.7E-08 78.5 17.3 194 153-375 16-222 (620)
139 PRK06305 DNA polymerase III su 97.7 0.00066 1.4E-08 76.3 16.1 181 153-375 17-223 (451)
140 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00052 1.1E-08 83.2 16.0 46 153-198 187-232 (852)
141 PRK14953 DNA polymerase III su 97.7 0.0012 2.6E-08 74.7 17.5 178 153-376 16-221 (486)
142 KOG4579 Leucine-rich repeat (L 97.7 8E-06 1.7E-10 72.1 0.1 109 533-643 29-141 (177)
143 KOG0989 Replication factor C, 97.7 0.00038 8.3E-09 70.5 11.9 186 153-374 36-229 (346)
144 PTZ00361 26 proteosome regulat 97.7 0.00026 5.6E-09 78.4 11.9 186 154-368 184-388 (438)
145 PRK00149 dnaA chromosomal repl 97.7 0.00047 1E-08 78.2 14.1 158 175-372 149-319 (450)
146 PF05673 DUF815: Protein of un 97.7 0.0026 5.6E-08 63.5 16.7 46 153-198 27-76 (249)
147 PRK06647 DNA polymerase III su 97.6 0.0019 4.1E-08 74.4 18.0 191 153-374 16-219 (563)
148 PRK12422 chromosomal replicati 97.6 0.00063 1.4E-08 76.2 13.7 152 175-368 142-306 (445)
149 TIGR02639 ClpA ATP-dependent C 97.6 0.00031 6.6E-09 84.5 11.9 45 154-198 183-227 (731)
150 PRK14086 dnaA chromosomal repl 97.6 0.00087 1.9E-08 76.4 14.6 157 175-371 315-484 (617)
151 PHA02544 44 clamp loader, smal 97.6 0.00038 8.2E-09 75.4 11.2 46 153-198 21-67 (316)
152 COG2255 RuvB Holliday junction 97.6 0.0043 9.3E-08 62.4 17.1 186 153-379 26-227 (332)
153 PTZ00454 26S protease regulato 97.6 0.0013 2.8E-08 72.4 15.1 187 154-369 146-351 (398)
154 PRK15386 type III secretion pr 97.6 0.00013 2.9E-09 78.6 6.9 80 529-619 50-133 (426)
155 KOG1644 U2-associated snRNP A' 97.6 9.4E-05 2E-09 70.1 4.8 84 532-616 43-128 (233)
156 PRK14965 DNA polymerase III su 97.5 0.0016 3.5E-08 75.7 15.6 195 153-378 16-224 (576)
157 PRK15386 type III secretion pr 97.5 0.00018 3.8E-09 77.7 6.9 63 551-619 50-113 (426)
158 COG3267 ExeA Type II secretory 97.5 0.0043 9.4E-08 61.7 15.8 191 172-377 49-247 (269)
159 KOG2227 Pre-initiation complex 97.5 0.0034 7.4E-08 67.4 16.0 173 153-347 150-342 (529)
160 PRK05563 DNA polymerase III su 97.5 0.0032 6.9E-08 72.9 17.3 190 153-373 16-218 (559)
161 CHL00095 clpC Clp protease ATP 97.5 0.00066 1.4E-08 82.7 12.2 45 154-198 180-224 (821)
162 PRK07399 DNA polymerase III su 97.5 0.0037 8E-08 66.7 16.4 196 154-375 5-221 (314)
163 TIGR00763 lon ATP-dependent pr 97.5 0.0097 2.1E-07 72.2 22.1 46 153-198 320-371 (775)
164 PRK05707 DNA polymerase III su 97.4 0.004 8.6E-08 66.9 16.2 94 256-375 106-203 (328)
165 KOG1909 Ran GTPase-activating 97.4 3.2E-05 6.9E-10 79.3 0.2 237 529-771 28-309 (382)
166 COG1373 Predicted ATPase (AAA+ 97.4 0.0021 4.5E-08 71.2 14.4 165 157-374 21-191 (398)
167 TIGR03689 pup_AAA proteasome A 97.4 0.0012 2.6E-08 74.3 12.6 174 154-345 183-380 (512)
168 KOG2982 Uncharacterized conser 97.4 0.00011 2.3E-09 73.7 3.6 223 554-789 46-285 (418)
169 TIGR01241 FtsH_fam ATP-depende 97.4 0.0027 5.9E-08 73.0 15.1 186 154-368 56-259 (495)
170 PRK11034 clpA ATP-dependent Cl 97.4 0.0024 5.1E-08 76.0 14.9 45 154-198 187-231 (758)
171 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 86.4 3.1 104 553-658 122-229 (699)
172 PRK10865 protein disaggregatio 97.3 0.0026 5.5E-08 77.6 14.2 45 154-198 179-223 (857)
173 COG0593 DnaA ATPase involved i 97.3 0.0012 2.6E-08 71.5 9.8 141 173-353 112-267 (408)
174 TIGR00602 rad24 checkpoint pro 97.3 0.0011 2.3E-08 76.8 9.8 46 153-198 84-134 (637)
175 PRK08118 topology modulation p 97.3 0.00017 3.7E-09 69.5 2.9 36 175-210 2-37 (167)
176 PRK10536 hypothetical protein; 97.3 0.0018 3.9E-08 65.5 10.1 55 154-211 56-110 (262)
177 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 79.5 12.0 45 154-198 174-218 (852)
178 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.2E-09 84.3 3.6 128 531-661 122-262 (699)
179 PRK12608 transcription termina 97.2 0.0019 4.2E-08 69.0 10.7 104 161-266 119-230 (380)
180 PRK08116 hypothetical protein; 97.2 0.00047 1E-08 71.9 6.0 74 175-266 115-188 (268)
181 PF04665 Pox_A32: Poxvirus A32 97.2 0.00097 2.1E-08 67.1 7.9 36 175-213 14-49 (241)
182 CHL00176 ftsH cell division pr 97.2 0.004 8.7E-08 72.7 13.5 186 153-367 183-386 (638)
183 smart00382 AAA ATPases associa 97.2 0.0012 2.7E-08 61.6 7.6 88 174-268 2-90 (148)
184 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0059 1.3E-07 67.5 13.3 91 154-267 191-293 (802)
185 PF10443 RNA12: RNA12 protein; 97.1 0.025 5.4E-07 61.3 17.9 200 158-387 1-290 (431)
186 COG0466 Lon ATP-dependent Lon 97.1 0.043 9.4E-07 62.5 20.2 166 154-343 324-508 (782)
187 PRK08769 DNA polymerase III su 97.1 0.014 2.9E-07 62.2 15.7 180 160-376 11-209 (319)
188 PRK10787 DNA-binding ATP-depen 97.1 0.014 3E-07 70.3 17.3 46 153-198 322-373 (784)
189 PF13177 DNA_pol3_delta2: DNA 97.1 0.0076 1.6E-07 57.7 12.0 42 157-198 1-43 (162)
190 PRK08058 DNA polymerase III su 97.1 0.015 3.2E-07 62.9 15.6 45 154-198 6-52 (329)
191 PF00004 AAA: ATPase family as 97.0 0.0015 3.4E-08 60.2 6.8 22 177-198 1-22 (132)
192 KOG0741 AAA+-type ATPase [Post 97.0 0.01 2.2E-07 64.5 13.5 174 173-379 537-716 (744)
193 COG1222 RPT1 ATP-dependent 26S 97.0 0.0044 9.6E-08 64.4 10.3 181 155-380 153-372 (406)
194 PRK07261 topology modulation p 97.0 0.0024 5.3E-08 61.8 7.9 35 176-210 2-36 (171)
195 PRK06835 DNA replication prote 97.0 0.018 4E-07 61.7 15.2 37 174-213 183-219 (329)
196 PRK06871 DNA polymerase III su 97.0 0.036 7.7E-07 59.2 17.2 175 160-372 9-200 (325)
197 KOG1644 U2-associated snRNP A' 96.9 0.0011 2.3E-08 63.2 4.6 105 577-690 42-150 (233)
198 KOG4579 Leucine-rich repeat (L 96.9 0.00022 4.8E-09 63.2 0.1 88 531-620 53-142 (177)
199 PRK12727 flagellar biosynthesi 96.9 0.031 6.8E-07 62.6 16.6 87 174-265 350-437 (559)
200 PF00448 SRP54: SRP54-type pro 96.8 0.0055 1.2E-07 60.5 9.2 89 174-265 1-92 (196)
201 PRK06090 DNA polymerase III su 96.8 0.046 9.9E-07 58.2 16.6 164 160-375 10-201 (319)
202 COG2812 DnaX DNA polymerase II 96.8 0.0061 1.3E-07 68.3 9.9 187 153-370 16-215 (515)
203 TIGR01243 CDC48 AAA family ATP 96.7 0.013 2.7E-07 71.0 13.2 45 154-198 179-236 (733)
204 COG0542 clpA ATP-binding subun 96.7 0.061 1.3E-06 63.0 17.9 104 153-267 491-604 (786)
205 KOG0991 Replication factor C, 96.7 0.0058 1.3E-07 59.3 7.9 46 153-198 27-72 (333)
206 PRK12377 putative replication 96.7 0.0082 1.8E-07 61.5 9.7 74 173-266 100-173 (248)
207 PRK08181 transposase; Validate 96.7 0.0022 4.8E-08 66.5 5.5 77 167-266 101-177 (269)
208 TIGR01243 CDC48 AAA family ATP 96.7 0.023 5.1E-07 68.8 15.1 184 154-369 454-657 (733)
209 PRK07993 DNA polymerase III su 96.7 0.067 1.4E-06 57.7 16.5 178 160-374 9-203 (334)
210 KOG0730 AAA+-type ATPase [Post 96.6 0.03 6.4E-07 63.1 13.7 165 154-358 435-630 (693)
211 PRK10865 protein disaggregatio 96.6 0.39 8.5E-06 58.9 24.8 46 153-198 568-622 (857)
212 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0082 1.8E-07 64.0 8.8 57 154-210 52-118 (361)
213 KOG2228 Origin recognition com 96.6 0.022 4.7E-07 58.8 11.2 177 153-344 24-220 (408)
214 COG2884 FtsE Predicted ATPase 96.6 0.01 2.2E-07 56.2 8.1 26 173-198 27-52 (223)
215 KOG1947 Leucine rich repeat pr 96.6 0.00035 7.7E-09 80.8 -1.8 108 552-659 187-305 (482)
216 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.3E-08 58.5 3.5 23 176-198 1-23 (121)
217 CHL00195 ycf46 Ycf46; Provisio 96.5 0.024 5.3E-07 64.0 12.6 185 154-369 229-429 (489)
218 KOG2123 Uncharacterized conser 96.5 0.00042 9.1E-09 68.9 -1.4 58 553-614 19-76 (388)
219 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.7E-08 65.6 1.8 61 574-634 62-126 (260)
220 KOG2123 Uncharacterized conser 96.5 0.00023 4.9E-09 70.7 -3.4 80 577-660 19-99 (388)
221 PRK06526 transposase; Provisio 96.5 0.0026 5.6E-08 65.6 4.1 25 174-198 98-122 (254)
222 cd01393 recA_like RecA is a b 96.5 0.027 5.8E-07 57.6 11.7 90 173-266 18-124 (226)
223 cd00983 recA RecA is a bacter 96.5 0.031 6.7E-07 59.3 12.2 86 173-266 54-143 (325)
224 COG1223 Predicted ATPase (AAA+ 96.5 0.052 1.1E-06 53.9 12.6 175 153-368 121-318 (368)
225 PRK09183 transposase/IS protei 96.5 0.0029 6.2E-08 65.8 4.4 25 174-198 102-126 (259)
226 PF07693 KAP_NTPase: KAP famil 96.4 0.059 1.3E-06 58.6 14.9 40 159-198 2-44 (325)
227 PRK09361 radB DNA repair and r 96.4 0.016 3.5E-07 59.2 9.8 88 173-265 22-116 (225)
228 PRK04296 thymidine kinase; Pro 96.4 0.0034 7.4E-08 62.0 4.6 86 175-266 3-88 (190)
229 PRK06964 DNA polymerase III su 96.4 0.12 2.6E-06 55.6 16.5 92 255-376 131-226 (342)
230 TIGR02237 recomb_radB DNA repa 96.4 0.019 4.2E-07 57.9 10.0 89 173-266 11-107 (209)
231 KOG0743 AAA+-type ATPase [Post 96.4 0.63 1.4E-05 50.7 21.3 170 175-383 236-417 (457)
232 TIGR02640 gas_vesic_GvpN gas v 96.4 0.087 1.9E-06 55.0 14.9 56 160-223 9-64 (262)
233 cd01133 F1-ATPase_beta F1 ATP 96.4 0.014 2.9E-07 60.2 8.5 93 172-267 67-174 (274)
234 PRK10867 signal recognition pa 96.3 0.13 2.8E-06 57.2 16.7 90 173-265 99-192 (433)
235 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.023 4.9E-07 58.5 10.3 92 173-266 18-125 (235)
236 cd01394 radB RadB. The archaea 96.3 0.032 7E-07 56.6 11.1 88 173-265 18-112 (218)
237 PF08423 Rad51: Rad51; InterP 96.3 0.025 5.4E-07 58.6 10.3 92 173-265 37-142 (256)
238 KOG2004 Mitochondrial ATP-depe 96.3 0.072 1.6E-06 60.5 14.2 63 154-222 412-480 (906)
239 PRK06696 uridine kinase; Valid 96.3 0.0061 1.3E-07 62.1 5.6 42 157-198 2-46 (223)
240 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.7E-08 63.3 2.8 103 530-634 42-153 (260)
241 TIGR02012 tigrfam_recA protein 96.3 0.012 2.6E-07 62.3 7.8 86 173-266 54-143 (321)
242 PRK07952 DNA replication prote 96.3 0.026 5.5E-07 57.7 10.0 88 161-267 84-173 (244)
243 cd01131 PilT Pilus retraction 96.2 0.0055 1.2E-07 61.0 4.8 109 175-317 2-113 (198)
244 PRK05541 adenylylsulfate kinas 96.2 0.013 2.7E-07 57.3 7.3 36 173-211 6-41 (176)
245 KOG1514 Origin recognition com 96.2 0.2 4.2E-06 57.2 16.8 194 154-375 397-621 (767)
246 KOG0744 AAA+-type ATPase [Post 96.1 0.018 3.9E-07 59.0 7.8 81 174-266 177-260 (423)
247 PRK09354 recA recombinase A; P 96.1 0.017 3.7E-07 61.8 8.0 86 173-266 59-148 (349)
248 COG1484 DnaC DNA replication p 96.1 0.027 5.8E-07 58.2 9.2 75 173-267 104-178 (254)
249 PLN00020 ribulose bisphosphate 96.1 0.0095 2.1E-07 63.1 5.9 27 172-198 146-172 (413)
250 COG0470 HolB ATPase involved i 96.1 0.033 7.2E-07 60.5 10.6 45 154-198 2-48 (325)
251 TIGR03346 chaperone_ClpB ATP-d 96.1 0.022 4.8E-07 69.8 9.9 46 153-198 565-619 (852)
252 TIGR02238 recomb_DMC1 meiotic 96.1 0.044 9.6E-07 58.4 10.9 92 173-266 95-201 (313)
253 PRK04132 replication factor C 96.0 0.097 2.1E-06 62.7 14.6 153 182-375 574-731 (846)
254 COG2607 Predicted ATPase (AAA+ 96.0 0.031 6.7E-07 55.0 8.6 46 153-198 60-109 (287)
255 cd03238 ABC_UvrA The excision 96.0 0.023 5E-07 55.1 7.9 24 173-196 20-43 (176)
256 PF13306 LRR_5: Leucine rich r 96.0 0.017 3.8E-07 52.9 6.9 97 549-651 31-128 (129)
257 PRK08939 primosomal protein Dn 96.0 0.029 6.3E-07 59.6 9.3 90 157-267 135-228 (306)
258 CHL00095 clpC Clp protease ATP 96.0 0.26 5.7E-06 60.4 18.6 46 153-198 509-563 (821)
259 COG1102 Cmk Cytidylate kinase 96.0 0.019 4.2E-07 52.8 6.5 46 176-235 2-47 (179)
260 cd03247 ABCC_cytochrome_bd The 95.9 0.025 5.4E-07 55.3 7.8 26 173-198 27-52 (178)
261 KOG1969 DNA replication checkp 95.9 0.018 3.9E-07 65.4 7.4 73 173-268 325-399 (877)
262 TIGR01425 SRP54_euk signal rec 95.9 0.28 6E-06 54.3 16.4 26 173-198 99-124 (429)
263 PRK15455 PrkA family serine pr 95.9 0.0095 2.1E-07 66.8 5.0 45 154-198 77-127 (644)
264 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.058 1.3E-06 55.5 10.6 88 173-266 20-136 (237)
265 PRK06547 hypothetical protein; 95.9 0.012 2.7E-07 56.7 5.2 35 164-198 5-39 (172)
266 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.044 9.4E-07 51.7 8.6 24 175-198 3-26 (159)
267 KOG0736 Peroxisome assembly fa 95.8 0.078 1.7E-06 60.8 11.8 92 153-267 672-775 (953)
268 PRK00771 signal recognition pa 95.8 0.06 1.3E-06 59.9 11.1 89 173-265 94-184 (437)
269 PRK06921 hypothetical protein; 95.8 0.036 7.7E-07 57.8 8.8 39 173-213 116-154 (266)
270 PLN03187 meiotic recombination 95.8 0.067 1.4E-06 57.5 11.0 92 173-265 125-230 (344)
271 cd01120 RecA-like_NTPases RecA 95.8 0.047 1E-06 52.3 9.1 40 176-218 1-40 (165)
272 cd03115 SRP The signal recogni 95.8 0.038 8.2E-07 53.8 8.4 23 176-198 2-24 (173)
273 KOG0731 AAA+-type ATPase conta 95.8 0.083 1.8E-06 61.5 12.1 188 154-372 312-521 (774)
274 COG0572 Udk Uridine kinase [Nu 95.8 0.029 6.3E-07 55.3 7.2 26 173-198 7-32 (218)
275 KOG0733 Nuclear AAA ATPase (VC 95.8 0.14 2.9E-06 57.3 13.0 153 174-368 545-717 (802)
276 KOG0728 26S proteasome regulat 95.8 0.17 3.8E-06 49.8 12.3 193 155-377 148-365 (404)
277 PF06309 Torsin: Torsin; Inte 95.8 0.071 1.5E-06 47.6 9.0 45 154-198 26-77 (127)
278 PRK14722 flhF flagellar biosyn 95.7 0.043 9.3E-07 59.5 9.2 88 174-266 137-225 (374)
279 PF00154 RecA: recA bacterial 95.7 0.16 3.6E-06 53.7 13.2 87 173-267 52-142 (322)
280 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9E-08 36.9 0.8 19 603-621 2-20 (22)
281 TIGR00959 ffh signal recogniti 95.7 0.052 1.1E-06 60.3 9.9 91 173-265 98-191 (428)
282 cd03214 ABC_Iron-Siderophores_ 95.7 0.039 8.5E-07 54.0 8.2 90 173-267 24-126 (180)
283 PRK06067 flagellar accessory p 95.7 0.07 1.5E-06 54.8 10.3 88 173-266 24-130 (234)
284 KOG0735 AAA+-type ATPase [Post 95.7 0.027 5.8E-07 63.7 7.3 73 173-266 430-504 (952)
285 cd03228 ABCC_MRP_Like The MRP 95.6 0.044 9.5E-07 53.2 8.2 26 173-198 27-52 (171)
286 PF00485 PRK: Phosphoribulokin 95.6 0.08 1.7E-06 52.6 10.2 23 176-198 1-23 (194)
287 KOG2035 Replication factor C, 95.6 0.37 7.9E-06 48.7 14.3 208 155-398 15-261 (351)
288 PF00006 ATP-synt_ab: ATP synt 95.6 0.063 1.4E-06 53.7 9.3 95 165-266 5-115 (215)
289 TIGR03345 VI_ClpV1 type VI sec 95.6 0.039 8.5E-07 67.2 9.4 46 153-198 566-620 (852)
290 PRK07667 uridine kinase; Provi 95.6 0.024 5.1E-07 56.2 6.3 37 162-198 3-41 (193)
291 PRK10733 hflB ATP-dependent me 95.6 0.12 2.6E-06 61.2 13.2 183 154-368 153-356 (644)
292 PRK04301 radA DNA repair and r 95.6 0.09 2E-06 56.7 11.3 91 173-265 101-207 (317)
293 PRK08699 DNA polymerase III su 95.6 0.26 5.7E-06 52.9 14.6 41 302-342 142-184 (325)
294 COG1136 SalX ABC-type antimicr 95.6 0.064 1.4E-06 53.5 9.1 25 173-197 30-54 (226)
295 KOG0734 AAA+-type ATPase conta 95.6 0.024 5.2E-07 61.9 6.4 45 154-198 305-361 (752)
296 TIGR03499 FlhF flagellar biosy 95.6 0.056 1.2E-06 57.0 9.2 88 173-265 193-281 (282)
297 TIGR02239 recomb_RAD51 DNA rep 95.5 0.081 1.7E-06 56.6 10.4 92 173-265 95-200 (316)
298 PRK08972 fliI flagellum-specif 95.5 0.032 7E-07 61.3 7.3 90 173-267 161-263 (444)
299 PF01695 IstB_IS21: IstB-like 95.5 0.025 5.5E-07 55.0 5.9 74 173-267 46-119 (178)
300 TIGR02639 ClpA ATP-dependent C 95.5 0.061 1.3E-06 65.0 10.5 46 153-198 454-508 (731)
301 cd01121 Sms Sms (bacterial rad 95.5 0.07 1.5E-06 58.3 9.8 85 173-266 81-168 (372)
302 PRK14974 cell division protein 95.4 0.12 2.6E-06 55.5 11.2 90 173-266 139-232 (336)
303 cd03216 ABC_Carb_Monos_I This 95.4 0.027 5.9E-07 54.1 5.8 85 173-267 25-111 (163)
304 COG5238 RNA1 Ran GTPase-activa 95.4 0.0043 9.4E-08 61.7 0.2 82 552-634 29-130 (388)
305 KOG1947 Leucine rich repeat pr 95.4 0.0021 4.5E-08 74.3 -2.5 113 573-691 184-306 (482)
306 COG5238 RNA1 Ran GTPase-activa 95.4 0.012 2.6E-07 58.6 3.1 87 530-616 29-135 (388)
307 COG0194 Gmk Guanylate kinase [ 95.4 0.045 9.8E-07 52.1 6.8 25 174-198 4-28 (191)
308 PRK09270 nucleoside triphospha 95.4 0.022 4.8E-07 58.2 5.2 27 172-198 31-57 (229)
309 PRK04328 hypothetical protein; 95.3 0.08 1.7E-06 54.8 9.3 87 173-265 22-137 (249)
310 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.14 3E-06 52.5 10.9 87 173-265 19-130 (229)
311 COG0542 clpA ATP-binding subun 95.3 0.084 1.8E-06 61.9 10.1 162 154-342 171-345 (786)
312 cd03246 ABCC_Protease_Secretio 95.3 0.05 1.1E-06 52.9 7.3 26 173-198 27-52 (173)
313 COG1618 Predicted nucleotide k 95.3 0.022 4.8E-07 52.5 4.3 25 174-198 5-29 (179)
314 TIGR02858 spore_III_AA stage I 95.3 0.099 2.1E-06 54.4 9.7 126 162-317 98-233 (270)
315 PF13238 AAA_18: AAA domain; P 95.3 0.014 3.1E-07 53.4 3.2 22 177-198 1-22 (129)
316 KOG1532 GTPase XAB1, interacts 95.3 0.09 1.9E-06 52.7 8.7 61 173-234 18-87 (366)
317 COG4608 AppF ABC-type oligopep 95.3 0.077 1.7E-06 53.9 8.5 128 173-321 38-178 (268)
318 cd03222 ABC_RNaseL_inhibitor T 95.3 0.062 1.3E-06 52.1 7.6 27 172-198 23-49 (177)
319 PHA00729 NTP-binding motif con 95.2 0.026 5.6E-07 56.3 5.0 36 163-198 6-41 (226)
320 cd03230 ABC_DR_subfamily_A Thi 95.2 0.052 1.1E-06 52.7 7.2 26 173-198 25-50 (173)
321 TIGR01650 PD_CobS cobaltochela 95.2 0.31 6.6E-06 51.7 13.1 60 155-222 47-106 (327)
322 PRK11889 flhF flagellar biosyn 95.2 0.094 2E-06 56.6 9.4 88 173-265 240-329 (436)
323 PRK08233 hypothetical protein; 95.2 0.017 3.7E-07 56.7 3.6 25 174-198 3-27 (182)
324 PRK05480 uridine/cytidine kina 95.2 0.019 4.1E-07 57.9 4.0 27 172-198 4-30 (209)
325 cd02019 NK Nucleoside/nucleoti 95.2 0.017 3.7E-07 46.2 2.9 23 176-198 1-23 (69)
326 COG0464 SpoVK ATPases of the A 95.2 0.18 3.9E-06 58.2 12.5 148 173-347 275-427 (494)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.081 1.7E-06 49.6 7.9 26 173-198 25-50 (144)
328 TIGR00064 ftsY signal recognit 95.1 0.12 2.5E-06 54.1 9.8 89 173-265 71-163 (272)
329 PF13306 LRR_5: Leucine rich r 95.1 0.042 9.1E-07 50.3 5.8 103 549-658 8-112 (129)
330 PRK11034 clpA ATP-dependent Cl 95.1 0.086 1.9E-06 63.1 9.7 46 153-198 458-512 (758)
331 PTZ00301 uridine kinase; Provi 95.1 0.019 4.2E-07 57.3 3.7 25 174-198 3-27 (210)
332 cd03223 ABCD_peroxisomal_ALDP 95.1 0.083 1.8E-06 50.9 8.0 88 173-267 26-120 (166)
333 PRK06851 hypothetical protein; 95.1 0.39 8.3E-06 52.1 13.7 57 154-216 198-254 (367)
334 PTZ00494 tuzin-like protein; P 95.1 1.4 3.1E-05 47.9 17.4 163 152-343 370-544 (664)
335 PRK12726 flagellar biosynthesi 95.0 0.24 5.2E-06 53.4 11.7 87 173-265 205-294 (407)
336 TIGR02236 recomb_radA DNA repa 95.0 0.2 4.2E-06 54.0 11.5 92 173-266 94-202 (310)
337 TIGR00390 hslU ATP-dependent p 95.0 0.054 1.2E-06 58.9 6.9 46 153-198 12-71 (441)
338 COG0468 RecA RecA/RadA recombi 95.0 0.13 2.9E-06 53.3 9.6 90 173-265 59-150 (279)
339 PRK10463 hydrogenase nickel in 95.0 0.1 2.2E-06 54.4 8.6 35 164-198 94-128 (290)
340 PRK13531 regulatory ATPase Rav 95.0 0.037 8E-07 61.5 5.6 44 153-198 20-63 (498)
341 PRK12678 transcription termina 94.9 0.038 8.2E-07 61.9 5.7 99 164-266 405-513 (672)
342 cd01135 V_A-ATPase_B V/A-type 94.9 0.12 2.6E-06 53.2 9.0 96 172-267 67-177 (276)
343 COG0563 Adk Adenylate kinase a 94.9 0.039 8.5E-07 53.5 5.2 23 176-198 2-24 (178)
344 TIGR00554 panK_bact pantothena 94.9 0.15 3.3E-06 53.4 10.0 27 172-198 60-86 (290)
345 PF01583 APS_kinase: Adenylyls 94.9 0.031 6.7E-07 52.4 4.2 36 174-212 2-37 (156)
346 PF12775 AAA_7: P-loop contain 94.9 0.038 8.3E-07 57.7 5.4 56 163-222 23-78 (272)
347 cd01129 PulE-GspE PulE/GspE Th 94.9 0.089 1.9E-06 54.8 8.1 104 156-272 62-165 (264)
348 COG0541 Ffh Signal recognition 94.9 1.3 2.8E-05 48.2 16.6 90 173-265 99-191 (451)
349 TIGR00235 udk uridine kinase. 94.9 0.024 5.2E-07 57.0 3.7 26 173-198 5-30 (207)
350 PRK06762 hypothetical protein; 94.9 0.025 5.3E-07 54.7 3.6 25 174-198 2-26 (166)
351 KOG2170 ATPase of the AAA+ sup 94.9 0.12 2.6E-06 52.8 8.4 46 154-199 83-135 (344)
352 PF13671 AAA_33: AAA domain; P 94.8 0.024 5.2E-07 53.1 3.4 23 176-198 1-23 (143)
353 COG4088 Predicted nucleotide k 94.8 0.027 5.9E-07 53.9 3.6 24 175-198 2-25 (261)
354 TIGR00150 HI0065_YjeE ATPase, 94.8 0.053 1.1E-06 49.4 5.3 39 160-198 6-46 (133)
355 PTZ00035 Rad51 protein; Provis 94.8 0.3 6.4E-06 52.8 12.0 92 173-266 117-223 (337)
356 cd02025 PanK Pantothenate kina 94.8 0.12 2.7E-06 52.2 8.6 23 176-198 1-23 (220)
357 PF06745 KaiC: KaiC; InterPro 94.8 0.057 1.2E-06 55.1 6.3 89 173-266 18-125 (226)
358 PF13481 AAA_25: AAA domain; P 94.8 0.17 3.7E-06 50.2 9.5 92 174-267 32-152 (193)
359 TIGR03575 selen_PSTK_euk L-ser 94.7 0.12 2.7E-06 55.3 8.8 22 177-198 2-23 (340)
360 PRK08927 fliI flagellum-specif 94.7 0.091 2E-06 58.1 7.9 90 173-267 157-259 (442)
361 PLN03186 DNA repair protein RA 94.7 0.24 5.2E-06 53.4 11.0 92 173-265 122-227 (342)
362 cd00071 GMPK Guanosine monopho 94.7 0.052 1.1E-06 50.3 5.2 23 176-198 1-23 (137)
363 cd01124 KaiC KaiC is a circadi 94.7 0.13 2.7E-06 50.8 8.4 45 176-225 1-45 (187)
364 COG1121 ZnuC ABC-type Mn/Zn tr 94.6 0.13 2.8E-06 52.2 8.1 25 173-197 29-53 (254)
365 TIGR03878 thermo_KaiC_2 KaiC d 94.6 0.22 4.9E-06 51.8 10.2 40 173-215 35-74 (259)
366 PRK09519 recA DNA recombinatio 94.6 0.1 2.2E-06 61.8 8.4 86 173-266 59-148 (790)
367 PF08433 KTI12: Chromatin asso 94.6 0.095 2.1E-06 54.5 7.4 24 175-198 2-25 (270)
368 PRK03839 putative kinase; Prov 94.6 0.029 6.3E-07 55.0 3.4 23 176-198 2-24 (180)
369 PRK12723 flagellar biosynthesi 94.6 0.2 4.2E-06 55.0 10.0 89 173-265 173-263 (388)
370 COG1120 FepC ABC-type cobalami 94.6 0.14 3.1E-06 52.1 8.3 26 173-198 27-52 (258)
371 PRK06002 fliI flagellum-specif 94.6 0.14 3E-06 56.7 8.8 90 173-267 164-265 (450)
372 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.18 3.8E-06 50.7 9.1 26 173-198 33-58 (207)
373 PRK06936 type III secretion sy 94.5 0.1 2.2E-06 57.7 7.7 90 172-266 160-262 (439)
374 PRK05201 hslU ATP-dependent pr 94.5 0.092 2E-06 57.2 7.2 75 153-230 15-107 (443)
375 PF02562 PhoH: PhoH-like prote 94.5 0.058 1.3E-06 53.2 5.2 53 157-212 4-56 (205)
376 PRK14527 adenylate kinase; Pro 94.5 0.052 1.1E-06 53.7 5.0 26 173-198 5-30 (191)
377 COG1428 Deoxynucleoside kinase 94.5 0.031 6.8E-07 54.2 3.2 49 174-228 4-52 (216)
378 TIGR01360 aden_kin_iso1 adenyl 94.5 0.034 7.3E-07 55.0 3.6 26 173-198 2-27 (188)
379 TIGR00708 cobA cob(I)alamin ad 94.5 0.27 5.9E-06 47.0 9.4 25 174-198 5-29 (173)
380 PF07728 AAA_5: AAA domain (dy 94.4 0.091 2E-06 48.9 6.3 42 177-224 2-43 (139)
381 PRK06217 hypothetical protein; 94.4 0.061 1.3E-06 52.8 5.3 23 176-198 3-25 (183)
382 PRK05922 type III secretion sy 94.4 0.12 2.6E-06 57.1 8.0 91 172-267 155-258 (434)
383 cd02027 APSK Adenosine 5'-phos 94.4 0.13 2.8E-06 48.6 7.2 23 176-198 1-23 (149)
384 COG3640 CooC CO dehydrogenase 94.4 0.076 1.6E-06 52.3 5.6 50 176-234 2-51 (255)
385 PF03205 MobB: Molybdopterin g 94.4 0.059 1.3E-06 50.0 4.8 39 175-215 1-39 (140)
386 PF03308 ArgK: ArgK protein; 94.4 0.087 1.9E-06 53.2 6.2 62 161-223 14-77 (266)
387 PRK08149 ATP synthase SpaL; Va 94.4 0.18 3.8E-06 55.8 9.2 90 173-267 150-252 (428)
388 PRK08533 flagellar accessory p 94.4 0.26 5.6E-06 50.3 9.9 54 173-232 23-76 (230)
389 PTZ00088 adenylate kinase 1; P 94.4 0.043 9.3E-07 55.7 4.2 23 176-198 8-30 (229)
390 PRK12597 F0F1 ATP synthase sub 94.4 0.12 2.6E-06 57.7 7.9 93 172-266 141-247 (461)
391 PRK13765 ATP-dependent proteas 94.4 0.079 1.7E-06 61.8 6.8 75 153-232 31-105 (637)
392 PRK12724 flagellar biosynthesi 94.3 0.18 3.8E-06 55.3 8.9 25 174-198 223-247 (432)
393 PF00910 RNA_helicase: RNA hel 94.3 0.031 6.6E-07 49.3 2.6 22 177-198 1-22 (107)
394 PRK14737 gmk guanylate kinase; 94.3 0.082 1.8E-06 51.8 5.9 26 173-198 3-28 (186)
395 PRK05439 pantothenate kinase; 94.3 0.3 6.6E-06 51.6 10.4 27 172-198 84-110 (311)
396 PRK13543 cytochrome c biogenes 94.3 0.15 3.4E-06 51.4 8.1 26 173-198 36-61 (214)
397 PRK11823 DNA repair protein Ra 94.3 0.16 3.5E-06 57.2 8.9 84 173-265 79-165 (446)
398 PRK04040 adenylate kinase; Pro 94.2 0.041 8.9E-07 54.1 3.6 25 174-198 2-26 (188)
399 PRK09280 F0F1 ATP synthase sub 94.2 0.2 4.2E-06 55.8 9.1 93 172-266 142-248 (463)
400 PRK14721 flhF flagellar biosyn 94.2 0.27 5.9E-06 54.3 10.2 87 174-265 191-278 (420)
401 cd02024 NRK1 Nicotinamide ribo 94.2 0.034 7.5E-07 54.2 2.8 23 176-198 1-23 (187)
402 cd02023 UMPK Uridine monophosp 94.1 0.033 7.2E-07 55.5 2.8 23 176-198 1-23 (198)
403 TIGR00764 lon_rel lon-related 94.1 0.15 3.3E-06 59.7 8.6 75 153-232 18-92 (608)
404 COG0488 Uup ATPase components 94.1 0.46 9.9E-06 54.4 12.1 135 173-329 347-511 (530)
405 PRK05703 flhF flagellar biosyn 94.1 0.17 3.6E-06 56.6 8.5 87 174-265 221-308 (424)
406 PF10236 DAP3: Mitochondrial r 94.1 1.8 4E-05 46.2 16.0 49 324-372 258-306 (309)
407 COG1124 DppF ABC-type dipeptid 94.1 0.06 1.3E-06 53.4 4.3 26 173-198 32-57 (252)
408 cd01132 F1_ATPase_alpha F1 ATP 94.1 0.16 3.5E-06 52.3 7.6 88 173-267 68-172 (274)
409 PRK10751 molybdopterin-guanine 94.1 0.049 1.1E-06 52.2 3.7 26 173-198 5-30 (173)
410 TIGR03498 FliI_clade3 flagella 94.1 0.13 2.9E-06 56.7 7.5 90 173-267 139-241 (418)
411 cd02028 UMPK_like Uridine mono 94.1 0.047 1E-06 53.3 3.6 23 176-198 1-23 (179)
412 PRK00625 shikimate kinase; Pro 94.1 0.041 8.9E-07 53.1 3.2 23 176-198 2-24 (173)
413 KOG3864 Uncharacterized conser 94.1 0.0052 1.1E-07 58.7 -2.9 68 725-796 120-189 (221)
414 COG1703 ArgK Putative periplas 94.1 0.095 2.1E-06 53.7 5.7 61 163-224 38-100 (323)
415 PRK05688 fliI flagellum-specif 94.1 0.18 3.9E-06 55.9 8.4 90 173-267 167-269 (451)
416 cd01136 ATPase_flagellum-secre 94.0 0.22 4.8E-06 53.0 8.8 90 172-266 67-169 (326)
417 PF00625 Guanylate_kin: Guanyl 94.0 0.069 1.5E-06 52.5 4.8 36 174-212 2-37 (183)
418 COG3598 RepA RecA-family ATPas 94.0 0.2 4.4E-06 51.5 8.0 61 176-236 91-159 (402)
419 PF13245 AAA_19: Part of AAA d 94.0 0.14 2.9E-06 41.8 5.6 26 173-198 9-34 (76)
420 PTZ00185 ATPase alpha subunit; 94.0 0.25 5.4E-06 55.0 9.2 95 172-267 187-300 (574)
421 PF07726 AAA_3: ATPase family 94.0 0.055 1.2E-06 48.4 3.5 27 177-206 2-28 (131)
422 PF00158 Sigma54_activat: Sigm 94.0 0.077 1.7E-06 51.0 4.8 44 155-198 1-46 (168)
423 TIGR01359 UMP_CMP_kin_fam UMP- 93.9 0.039 8.5E-07 54.2 2.8 23 176-198 1-23 (183)
424 PRK06995 flhF flagellar biosyn 93.9 0.25 5.4E-06 55.6 9.3 87 174-265 256-343 (484)
425 TIGR01420 pilT_fam pilus retra 93.9 0.077 1.7E-06 57.8 5.3 89 173-273 121-212 (343)
426 PRK00131 aroK shikimate kinase 93.9 0.052 1.1E-06 52.8 3.6 25 174-198 4-28 (175)
427 PF07724 AAA_2: AAA domain (Cd 93.9 0.056 1.2E-06 52.1 3.7 41 174-217 3-44 (171)
428 TIGR00416 sms DNA repair prote 93.9 0.28 6.1E-06 55.4 9.8 83 173-265 93-179 (454)
429 cd03217 ABC_FeS_Assembly ABC-t 93.9 0.14 3.1E-06 51.0 6.8 25 173-197 25-49 (200)
430 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.092 2E-06 50.1 5.1 84 173-267 24-109 (157)
431 PRK00279 adk adenylate kinase; 93.8 0.21 4.6E-06 50.4 7.9 23 176-198 2-24 (215)
432 TIGR03574 selen_PSTK L-seryl-t 93.8 0.1 2.3E-06 54.1 5.8 23 176-198 1-23 (249)
433 COG1066 Sms Predicted ATP-depe 93.8 0.44 9.5E-06 51.1 10.2 83 173-266 92-178 (456)
434 KOG0729 26S proteasome regulat 93.8 0.18 3.8E-06 50.3 6.8 45 154-198 178-235 (435)
435 KOG3347 Predicted nucleotide k 93.7 0.098 2.1E-06 47.5 4.6 35 174-216 7-41 (176)
436 TIGR02322 phosphon_PhnN phosph 93.7 0.054 1.2E-06 53.0 3.4 24 175-198 2-25 (179)
437 KOG1051 Chaperone HSP104 and r 93.7 0.27 5.9E-06 58.7 9.6 101 154-268 563-672 (898)
438 PRK05986 cob(I)alamin adenolsy 93.7 0.32 7E-06 47.2 8.5 26 173-198 21-46 (191)
439 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.098 2.1E-06 55.4 5.3 46 153-198 61-112 (358)
440 cd03213 ABCG_EPDR ABCG transpo 93.6 0.21 4.4E-06 49.6 7.3 26 173-198 34-59 (194)
441 PRK05973 replicative DNA helic 93.6 0.44 9.6E-06 48.3 9.7 49 173-226 63-111 (237)
442 TIGR01069 mutS2 MutS2 family p 93.6 0.12 2.6E-06 62.3 6.5 25 173-197 321-345 (771)
443 PRK00889 adenylylsulfate kinas 93.6 0.071 1.5E-06 52.0 3.9 26 173-198 3-28 (175)
444 cd00227 CPT Chloramphenicol (C 93.6 0.064 1.4E-06 52.2 3.5 24 175-198 3-26 (175)
445 TIGR02030 BchI-ChlI magnesium 93.6 0.1 2.3E-06 56.1 5.4 46 153-198 4-49 (337)
446 COG1419 FlhF Flagellar GTP-bin 93.6 0.65 1.4E-05 50.2 11.2 99 162-265 187-290 (407)
447 TIGR03305 alt_F1F0_F1_bet alte 93.5 0.25 5.5E-06 54.8 8.4 94 172-267 136-243 (449)
448 cd02020 CMPK Cytidine monophos 93.5 0.054 1.2E-06 51.0 2.9 23 176-198 1-23 (147)
449 PF00560 LRR_1: Leucine Rich R 93.5 0.036 7.7E-07 32.9 1.0 22 578-600 1-22 (22)
450 PF05970 PIF1: PIF1-like helic 93.5 0.13 2.9E-06 56.5 6.3 38 161-198 9-46 (364)
451 PRK10416 signal recognition pa 93.5 0.44 9.6E-06 51.0 10.0 26 173-198 113-138 (318)
452 KOG0735 AAA+-type ATPase [Post 93.5 1.8 3.9E-05 49.8 14.7 182 155-369 669-870 (952)
453 TIGR02902 spore_lonB ATP-depen 93.5 0.13 2.7E-06 59.6 6.3 45 154-198 66-110 (531)
454 PRK07132 DNA polymerase III su 93.5 3.2 6.8E-05 44.0 16.2 167 162-374 5-184 (299)
455 TIGR01040 V-ATPase_V1_B V-type 93.5 0.35 7.6E-06 53.5 9.2 95 172-267 139-258 (466)
456 PRK07594 type III secretion sy 93.4 0.32 7E-06 53.8 9.0 91 172-267 153-256 (433)
457 PRK14723 flhF flagellar biosyn 93.4 0.45 9.8E-06 56.3 10.7 88 174-266 185-273 (767)
458 COG0003 ArsA Predicted ATPase 93.4 0.12 2.6E-06 55.0 5.5 49 174-225 2-50 (322)
459 PF13504 LRR_7: Leucine rich r 93.4 0.051 1.1E-06 29.8 1.4 16 602-617 2-17 (17)
460 cd02021 GntK Gluconate kinase 93.4 0.057 1.2E-06 51.1 2.8 23 176-198 1-23 (150)
461 TIGR01041 ATP_syn_B_arch ATP s 93.4 0.22 4.8E-06 55.6 7.7 94 173-267 140-249 (458)
462 PRK15453 phosphoribulokinase; 93.4 0.39 8.6E-06 49.6 8.9 26 173-198 4-29 (290)
463 PF13086 AAA_11: AAA domain; P 93.4 0.16 3.5E-06 51.9 6.4 23 176-198 19-41 (236)
464 TIGR03263 guanyl_kin guanylate 93.4 0.061 1.3E-06 52.7 3.1 24 175-198 2-25 (180)
465 CHL00081 chlI Mg-protoporyphyr 93.3 0.11 2.3E-06 56.0 5.1 46 153-198 17-62 (350)
466 PF03193 DUF258: Protein of un 93.3 0.11 2.3E-06 49.1 4.4 36 160-198 24-59 (161)
467 cd01134 V_A-ATPase_A V/A-type 93.3 0.46 9.9E-06 50.6 9.4 59 164-227 146-206 (369)
468 COG0396 sufC Cysteine desulfur 93.3 0.62 1.3E-05 46.0 9.6 26 173-198 29-54 (251)
469 PRK13949 shikimate kinase; Pro 93.3 0.068 1.5E-06 51.6 3.1 23 176-198 3-25 (169)
470 PRK13947 shikimate kinase; Pro 93.3 0.071 1.5E-06 51.7 3.3 23 176-198 3-25 (171)
471 TIGR02655 circ_KaiC circadian 93.2 0.52 1.1E-05 54.0 10.8 97 163-265 250-362 (484)
472 KOG0652 26S proteasome regulat 93.2 1 2.2E-05 44.9 11.0 53 146-198 162-229 (424)
473 cd00820 PEPCK_HprK Phosphoenol 93.2 0.079 1.7E-06 46.1 3.0 23 173-195 14-36 (107)
474 COG0529 CysC Adenylylsulfate k 93.2 0.14 3.1E-06 48.0 4.9 29 170-198 19-47 (197)
475 PRK00300 gmk guanylate kinase; 93.2 0.076 1.6E-06 53.3 3.5 26 173-198 4-29 (205)
476 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.097 2.1E-06 52.7 4.2 23 174-196 29-51 (213)
477 COG0465 HflB ATP-dependent Zn 93.2 0.56 1.2E-05 53.7 10.5 46 153-198 150-207 (596)
478 KOG0739 AAA+-type ATPase [Post 93.1 0.39 8.5E-06 48.9 8.2 91 153-267 133-236 (439)
479 cd00544 CobU Adenosylcobinamid 93.1 0.49 1.1E-05 45.5 8.8 80 176-265 1-82 (169)
480 PRK14530 adenylate kinase; Pro 93.1 0.075 1.6E-06 53.8 3.4 24 175-198 4-27 (215)
481 CHL00059 atpA ATP synthase CF1 93.1 0.22 4.8E-06 55.5 7.1 89 172-267 139-244 (485)
482 TIGR03496 FliI_clade1 flagella 93.1 0.29 6.4E-06 54.1 8.1 89 173-266 136-237 (411)
483 cd02029 PRK_like Phosphoribulo 93.1 0.24 5.2E-06 50.6 6.8 23 176-198 1-23 (277)
484 TIGR00073 hypB hydrogenase acc 93.1 0.1 2.2E-06 52.4 4.2 32 167-198 15-46 (207)
485 cd01672 TMPK Thymidine monopho 93.0 0.19 4.2E-06 50.0 6.2 23 176-198 2-24 (200)
486 PF08477 Miro: Miro-like prote 93.0 0.081 1.8E-06 47.6 3.1 22 177-198 2-23 (119)
487 PF03266 NTPase_1: NTPase; In 93.0 0.081 1.8E-06 50.8 3.1 22 177-198 2-23 (168)
488 COG0467 RAD55 RecA-superfamily 93.0 0.12 2.7E-06 53.9 4.8 54 173-232 22-75 (260)
489 PRK10078 ribose 1,5-bisphospho 93.0 0.078 1.7E-06 52.2 3.1 24 175-198 3-26 (186)
490 COG1936 Predicted nucleotide k 92.9 0.077 1.7E-06 49.8 2.8 20 176-195 2-21 (180)
491 cd00464 SK Shikimate kinase (S 92.9 0.084 1.8E-06 50.1 3.2 22 177-198 2-23 (154)
492 PRK03846 adenylylsulfate kinas 92.9 0.1 2.2E-06 52.0 3.9 27 172-198 22-48 (198)
493 PF03215 Rad17: Rad17 cell cyc 92.9 0.17 3.6E-06 57.8 6.0 53 155-212 21-78 (519)
494 PRK06793 fliI flagellum-specif 92.9 0.43 9.4E-06 52.8 8.9 91 172-267 154-257 (432)
495 PF02374 ArsA_ATPase: Anion-tr 92.9 0.12 2.6E-06 55.0 4.6 46 175-223 2-47 (305)
496 PRK13407 bchI magnesium chelat 92.8 0.13 2.9E-06 55.2 4.8 46 153-198 8-53 (334)
497 PRK09099 type III secretion sy 92.8 0.44 9.5E-06 53.0 8.9 92 172-267 161-264 (441)
498 PRK12339 2-phosphoglycerate ki 92.8 0.1 2.2E-06 51.6 3.7 25 174-198 3-27 (197)
499 PRK06761 hypothetical protein; 92.8 0.19 4.1E-06 52.3 5.7 24 175-198 4-27 (282)
500 PRK05057 aroK shikimate kinase 92.8 0.099 2.1E-06 50.7 3.5 25 174-198 4-28 (172)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-100 Score=897.21 Aligned_cols=843 Identities=42% Similarity=0.703 Sum_probs=711.5
Q ss_pred hhhhHHHhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002606 14 FNRCLDCFLGKVAYIRNLEDNVVALEKDLALLIAKRNDLMTRVVDAERQQMRRLDQVQVWLSSVEAVEAEAGELIRRRSQ 93 (901)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~~~~~~~v~~Wl~~l~~~~~~~ed~ld~~~~ 93 (901)
++++...+.+++..+.+.++++..+++++..|++++.|+ ++++. ....+..|.+.++++.|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999998874 43332 2356788999999999999999998875
Q ss_pred HHhh----------------hhccCCcCCCccccchhHHHHHHHHHHHHHHHhCCCcccccc-cCCCCCcccCCCCCcc-
Q 002606 94 EIEK----------------LCLGGYCSKNCKSSYKFGTQVAKQLRDVKKLMDGGDFERVAE-KIPQPVVDERPTEPTV- 155 (901)
Q Consensus 94 ~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 155 (901)
+... -|..++|.+.....|.+++++.+.++.++.+..++.|..++. ..+......+|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 5322 233456667777788889999999999999988776766654 2333334444544444
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 002606 156 VGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLND 235 (901)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (901)
||.++.++++++.|.+++..+++|+||||+||||||++++|+...++++|+.++||+||++++...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999998889999999999999999999999994489999999999999999999999999999998776
Q ss_pred ccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHH
Q 002606 236 TWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEV 315 (901)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v 315 (901)
.+.....++++..+.+.|++|||+|||||||+..+|+.++.++|... +||+|++|||++.|
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~-------------------~g~KvvlTTRs~~V 301 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRE-------------------NGSKVVLTTRSEEV 301 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCcc-------------------CCeEEEEEeccHhh
Confidence 66776778999999999999999999999999999999999999887 89999999999999
Q ss_pred Hhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhccCCChHHHHHHHHH
Q 002606 316 CGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMACKKRPEEWKYAIEV 394 (901)
Q Consensus 316 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~~ 394 (901)
|.. |++...++++.|+++|||+||++.++......++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+.
T Consensus 302 ~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 302 CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 998 8888999999999999999999999988666667799999999999999999999999999999999999999999
Q ss_pred Hhcc-ccccCCCCccchhhHhhhccCCCcchhhhhhhhhccCCCCccccHHHHHHHHHhcCCCcc-ccccccchhhhhHH
Q 002606 395 LRTS-SSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGLLNE-SVKFGVQKEGYHIV 472 (901)
Q Consensus 395 l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~-~~~~~~~~~~~~~~ 472 (901)
+.+. ..+.+++.+.++++|.+||++||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ ..+..++++|+.|+
T Consensus 382 l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred ccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 9887 555667778999999999999996 99999999999999999999999999999999998 66889999999999
Q ss_pred HHHHHhccccccC----CCceeehhHHHHHHHHHhhhcccccccEEEEcCCccccccccccccccEEEEeecCccccccc
Q 002606 473 GILVRACLLEEVG----DDDVKLHDVIRDMALWIACDIEKEKENYLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILG 548 (901)
Q Consensus 473 ~~L~~~~ll~~~~----~~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~ 548 (901)
.+|++++|++... ..+|+|||+||++|.++|++.+.+++++++..+.+..+.|....+..+|++++.+|.+..++.
T Consensus 461 ~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~ 540 (889)
T KOG4658|consen 461 EELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAG 540 (889)
T ss_pred HHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccC
Confidence 9999999999874 379999999999999999999988888888887788888889999999999999999999988
Q ss_pred CCCCCCccEEEecCCc--ccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhhccccc
Q 002606 549 MPRCPHLLTLFLNNNV--KLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNL 626 (901)
Q Consensus 549 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 626 (901)
-..++.|++|.+.+|. +..++..||..|+.|++|||++|....++|++|+.|.|||||+++++.|+.||.++++|.+|
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 8899999999999995 78889999999999999999999889999999999999999999999999999999999999
Q ss_pred cccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhhhhccccccc
Q 002606 627 KCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRS 706 (901)
Q Consensus 627 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 706 (901)
.+||+..+..+..+| +++..|++||+|.+.... ...+.....++.+|.+|+.+.+...+..-+..+.....+.+
T Consensus 621 ~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~-----~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~ 694 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIP-GILLELQSLRVLRLPRSA-----LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS 694 (889)
T ss_pred heecccccccccccc-chhhhcccccEEEeeccc-----cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH
Confidence 999999987777665 546779999999998643 23345578888899999988887555433344555555555
Q ss_pred ccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccccc-cccccEEEeecCCCCCCCchhhccCCc
Q 002606 707 CTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFC-FQSLRVVVIDLCIGLKDLTFLVFASNL 785 (901)
Q Consensus 707 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~~~L~~L~L~~c~~l~~l~~l~~l~~L 785 (901)
..+.+.+.++..... .+++..+.+|+.|.+.+|...+. ...+........ |+++..+.+.+|.....+.|....|+|
T Consensus 695 ~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L 772 (889)
T KOG4658|consen 695 LLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDCGISEI-VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHL 772 (889)
T ss_pred HhHhhhhccccccee-ecccccccCcceEEEEcCCCchh-hcccccccchhhhHHHHHHHHhhccccccccchhhccCcc
Confidence 666666544333333 25778899999999999976542 223322222222 778999999999999999999999999
Q ss_pred cEEEEecccccccccccCcccC-ccccccCCCCCCcccee-eccCccccccccCCCCCCCCcceEeecCCcCCcCCCCCC
Q 002606 786 KSIEVRSCFAMEDIISVGKFAD-FPEVMANLNPFAKLQYL-QLAGLPNLKSIYWKPLPFSHLKEMSVFNCDKLKKLPLDS 863 (901)
Q Consensus 786 ~~L~L~~c~~l~~i~~~~~~~~-l~~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~l~~L~~L~i~~c~~L~~Lp~~~ 863 (901)
+.|.+..|..++++++...... +.. ....|+++..+ .+.+.+.+..+.+....++.|+.+.+..||+|+.+|...
T Consensus 773 ~~l~l~~~~~~e~~i~~~k~~~~l~~---~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKLKALLELKE---LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cEEEEecccccccCCCHHHHhhhccc---EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence 9999999999999876433211 111 12346666666 577778888887777788889999999999999999976
Q ss_pred cccc---ccceEEEccccccccceeCCcccccccc
Q 002606 864 NTAK---ECKLVICGEPDWWKELRWEDKPTQDAFL 895 (901)
Q Consensus 864 n~~~---~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 895 (901)
.... ........+.+|.+.+.|.++..+..+.
T Consensus 850 ~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 884 (889)
T KOG4658|consen 850 TLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRFW 884 (889)
T ss_pred ccceeccccceeecCCccceeeEEehhhhhhhhcc
Confidence 5531 1334445567889999999998887763
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-64 Score=621.84 Aligned_cols=639 Identities=22% Similarity=0.298 Sum_probs=430.4
Q ss_pred CcccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe---CCc-----------
Q 002606 153 PTVVGQQSQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV---SKD----------- 216 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---~~~----------- 216 (901)
+.+|||+++++++..+|.. ++.++|+||||||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4689999999999998853 578999999999999999999999987 678998888742 111
Q ss_pred CC-HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCC
Q 002606 217 LQ-IEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPL 295 (901)
Q Consensus 217 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (901)
+. ...+++.++.++..... ..... ...+++.++++|+||||||||+..+|+.+.......+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~------------- 322 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFG------------- 322 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCC-------------
Confidence 01 12334444444321110 01111 2457788999999999999999988888765443333
Q ss_pred CCCCCCCCcEEEEecCChHHHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 296 PSPEKSSESKVVFTTRSEEVCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 296 ~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
+||+||||||++.++..++...+|+++.|++++||+||+++||... ..++++.+++++|+++|+|+|||++++
T Consensus 323 ------~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 323 ------SGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred ------CCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 8999999999999998877888999999999999999999999765 345678899999999999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHhccccccCCCCccchhhHhhhccCCCcchhhhhhhhhccCCCCccccHHHHHHHHHhcCC
Q 002606 376 GRAMACKKRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGL 455 (901)
Q Consensus 376 g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~ 455 (901)
|+.|++ ++.++|+.++++++... ++.|..+|++||++|+++..|.||+++|+|+.+..++ .+..|++.+.
T Consensus 396 gs~L~~-k~~~~W~~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~ 465 (1153)
T PLN03210 396 GSYLRG-RDKEDWMDMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSD 465 (1153)
T ss_pred HHHHcC-CCHHHHHHHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcC
Confidence 999997 57899999999987643 2479999999999998745899999999999887654 4677888764
Q ss_pred CccccccccchhhhhHHHHHHHhccccccCCCceeehhHHHHHHHHHhhhccc--ccccEEEEc---------CCcccc-
Q 002606 456 LNESVKFGVQKEGYHIVGILVRACLLEEVGDDDVKLHDVIRDMALWIACDIEK--EKENYLVYA---------GAGLTE- 523 (901)
Q Consensus 456 i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~mHdlv~d~a~~~~~~~~~--~~~~~~~~~---------~~~~~~- 523 (901)
... +..++.|+++||++.. ...++|||++|+||+.++++... .+..++... ..+...
T Consensus 466 ~~~----------~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 466 LDV----------NIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred CCc----------hhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCccccee
Confidence 432 2238899999999875 46799999999999999865421 111222110 000000
Q ss_pred --------------c--ccccccc-------------------------------ccEEEEeecCcccccccCCCCCCcc
Q 002606 524 --------------V--QDVREWE-------------------------------KVRRLSLMENQIKVILGMPRCPHLL 556 (901)
Q Consensus 524 --------------~--~~~~~~~-------------------------------~lr~l~l~~~~~~~~~~~~~~~~L~ 556 (901)
+ ..+..+. ++|.|.+.++.+..+|....+.+|+
T Consensus 535 ~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~ 614 (1153)
T PLN03210 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614 (1153)
T ss_pred eEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc
Confidence 0 0112233 3455555555555555544567777
Q ss_pred EEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCC-CCcccchhhhcccccccccccccc
Q 002606 557 TLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNS-RIRELPEELAALVNLKCLNLEYTF 635 (901)
Q Consensus 557 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~ 635 (901)
.|++.+|.+..++.+ +..+++|++|+|+++..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++|.
T Consensus 615 ~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 615 KLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 777777777666655 4667888888888776667777 5777888888888876 566788888888888888888887
Q ss_pred CcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecc
Q 002606 636 DLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHC 715 (901)
Q Consensus 636 ~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~ 715 (901)
.++.+|.+ + ++++|++|++++|..... + + . ...+|+.|++..+.+..++..... ..+..|.+..
T Consensus 693 ~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~-~------p-~--~~~nL~~L~L~~n~i~~lP~~~~l----~~L~~L~l~~ 756 (1153)
T PLN03210 693 NLEILPTG-I-NLKSLYRLNLSGCSRLKS-F------P-D--ISTNISWLDLDETAIEEFPSNLRL----ENLDELILCE 756 (1153)
T ss_pred CcCccCCc-C-CCCCCCEEeCCCCCCccc-c------c-c--ccCCcCeeecCCCccccccccccc----cccccccccc
Confidence 77888865 3 778888888877643211 0 0 0 124556666655544433322110 1222222222
Q ss_pred cCCCcc-------cccCccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCCCCCCCchhhccCCccEE
Q 002606 716 FKDSSL-------DVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTFLVFASNLKSI 788 (901)
Q Consensus 716 ~~~~~~-------~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L 788 (901)
+....+ .......+++|+.|++++|+.+..++.... .+++|+.|+|++|..++.+|....+++|+.|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~------~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L 830 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ------NLHKLEHLEIENCINLETLPTGINLESLESL 830 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhh------CCCCCCEEECCCCCCcCeeCCCCCccccCEE
Confidence 111000 000011123455555555544443332211 2455555555555555544443345555555
Q ss_pred EEecccccccccccC-c-------ccCccccccCCCCCCccceeeccCccccccccCCCCCCCCcceEeecCCcCCcCCC
Q 002606 789 EVRSCFAMEDIISVG-K-------FADFPEVMANLNPFAKLQYLQLAGLPNLKSIYWKPLPFSHLKEMSVFNCDKLKKLP 860 (901)
Q Consensus 789 ~L~~c~~l~~i~~~~-~-------~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~c~~L~~Lp 860 (901)
++++|..+..++... + ...+..++..+..+++|+.|+|++|++|+.++.....+++|+.+++++|++|+.++
T Consensus 831 ~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 831 DLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 555554444332110 0 01111223356779999999999999999999988899999999999999999887
Q ss_pred CCCc
Q 002606 861 LDSN 864 (901)
Q Consensus 861 ~~~n 864 (901)
+..+
T Consensus 911 l~~~ 914 (1153)
T PLN03210 911 WNGS 914 (1153)
T ss_pred CCCC
Confidence 7543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.4e-45 Score=390.01 Aligned_cols=280 Identities=33% Similarity=0.636 Sum_probs=231.1
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 002606 158 QQSQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLND 235 (901)
Q Consensus 158 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (901)
||+++++|.+.|.+ ++.++|+|+||||+||||||++++++. ..+.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 689999999999999999999999986 468999999999999999999999999999987754
Q ss_pred cc-ccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChH
Q 002606 236 TW-KNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEE 314 (901)
Q Consensus 236 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~ 314 (901)
.. ...+.++....+.+.|+++++||||||||+...|+.+...++... .|++||||||+..
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~-------------------~~~kilvTTR~~~ 140 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFS-------------------SGSKILVTTRDRS 140 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHH-------------------SS-EEEEEESCGG
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccc-------------------ccccccccccccc
Confidence 33 456778899999999999999999999999999988887776554 7899999999999
Q ss_pred HHhhhcC-CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhccCCChHHHHHHHH
Q 002606 315 VCGWMEA-HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMACKKRPEEWKYAIE 393 (901)
Q Consensus 315 v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~~~~ 393 (901)
++..+.. ...|++++|+++||++||.+.++......++.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++
T Consensus 141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 141 VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9877665 678999999999999999999986652334455678999999999999999999999977667889999998
Q ss_pred HHhccccccCCCCccchhhHhhhccCCCcchhhhhhhhhccCCCCccccHHHHHHHHHhcCCCcc
Q 002606 394 VLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGLLNE 458 (901)
Q Consensus 394 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~ 458 (901)
.+.....+..+....++.++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|++..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 88776544444456899999999999999 89999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.5e-21 Score=244.44 Aligned_cols=307 Identities=20% Similarity=0.169 Sum_probs=196.0
Q ss_pred cccccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEec
Q 002606 529 EWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDL 608 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 608 (901)
.++++++|++++|.+....+...+++|++|++++|.+....+..++.+++|++|+|++|.....+|..++++.+|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45677888888777754434456778888888888776544455777888888888888555677878888888888888
Q ss_pred cCCCCc-ccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEE
Q 002606 609 SNSRIR-ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSF 687 (901)
Q Consensus 609 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l 687 (901)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.+. .+..++++++|+.|++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP-------IPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc-------cChhHhCCCCCCEEEC
Confidence 888776 56778888888888888887555566765 77888888888887766432 4556777888888887
Q ss_pred Eeccccc-hhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccccccccccEEE
Q 002606 688 TLRSSHA-LKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVV 766 (901)
Q Consensus 688 ~~~~~~~-~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~ 766 (901)
+.+.... ++... .....++.|++++|......+..+..+++|+.|++++|.....++. .. ..+++|+.|+
T Consensus 268 ~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~-----~~l~~L~~L~ 338 (968)
T PLN00113 268 YQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-AL-----TSLPRLQVLQ 338 (968)
T ss_pred cCCeeeccCchhH---hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hH-----hcCCCCCEEE
Confidence 7665432 22111 1123677777777766433334566777888888877643332221 11 1477788888
Q ss_pred eecCCCCCCCc-hhhccCCccEEEEecccccccccccC-cccCcc-----------ccccCCCCCCccceeeccCccccc
Q 002606 767 IDLCIGLKDLT-FLVFASNLKSIEVRSCFAMEDIISVG-KFADFP-----------EVMANLNPFAKLQYLQLAGLPNLK 833 (901)
Q Consensus 767 L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~-~~~~l~-----------~~~~~~~~~~~L~~L~L~~~~~L~ 833 (901)
|++|.....+| .++.+++|+.|++++|.....++..- ....+. ..+..+..+++|+.|+++++.--.
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 88775444444 46777888888887765433222100 000000 111234456788888887765444
Q ss_pred cccCCCCCCCCcceEeecC
Q 002606 834 SIYWKPLPFSHLKEMSVFN 852 (901)
Q Consensus 834 ~l~~~~~~l~~L~~L~i~~ 852 (901)
.++.....+++|+.|++++
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred ECChhHhcCCCCCEEECcC
Confidence 4444445566677766654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=6.5e-21 Score=238.82 Aligned_cols=310 Identities=17% Similarity=0.202 Sum_probs=185.2
Q ss_pred ccccccEEEEeecCcccc-ccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCE
Q 002606 528 REWEKVRRLSLMENQIKV-ILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLEL 605 (901)
Q Consensus 528 ~~~~~lr~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 605 (901)
..++++++|++++|.+.. +|. +..+++|++|++++|.+....+..+.++++|++|+|++|.....+|..++++.+|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345678888888877653 332 567788888888877765544555777888888888887656667777888888888
Q ss_pred EeccCCCCc-ccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcE
Q 002606 606 LDLSNSRIR-ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEV 684 (901)
Q Consensus 606 L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~ 684 (901)
|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+.+. .+..+.++++|+.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~ 288 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-------IPPSIFSLQKLIS 288 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-------CchhHhhccCcCE
Confidence 888888776 67777888888888888877554566654 77788888888877765432 3345556666666
Q ss_pred EEEEecccc-chhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccc-----------
Q 002606 685 LSFTLRSSH-ALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKG----------- 752 (901)
Q Consensus 685 L~l~~~~~~-~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~----------- 752 (901)
|+++.+... .++.... -...++.|.+.+|......+..+..+++|+.|++++|.....++.....
T Consensus 289 L~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 289 LDLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 666655432 1111111 1124555555555443322334455555555555554322111111100
Q ss_pred -------cccccccccccEEEeecCCCCCCCc-hhhccCCccEEEEecccccccccccCcccCccccccCCCCCCcccee
Q 002606 753 -------EAQQFCFQSLRVVVIDLCIGLKDLT-FLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYL 824 (901)
Q Consensus 753 -------~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L 824 (901)
......+++|+.|++.++.....+| .+..+++|+.|++++|.....++ ..+..+++|+.|
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p------------~~~~~l~~L~~L 433 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP------------SEFTKLPLVYFL 433 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC------------hhHhcCCCCCEE
Confidence 0000123455555555543333333 35566677777776665332221 245678888999
Q ss_pred eccCccccccccCCCCCCCCcceEeecCCcCCcCCC
Q 002606 825 QLAGLPNLKSIYWKPLPFSHLKEMSVFNCDKLKKLP 860 (901)
Q Consensus 825 ~L~~~~~L~~l~~~~~~l~~L~~L~i~~c~~L~~Lp 860 (901)
+++++.-...++.....+++|+.|++++|.-...+|
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 988865444444445567888888888776444444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.8e-23 Score=219.34 Aligned_cols=353 Identities=22% Similarity=0.266 Sum_probs=254.8
Q ss_pred cEEEEcCCccccccc-cccccccEEEEeecCccccccc-CCCCCCccEEEecCCcc--cccCchHHhcCCCCCEEEccCC
Q 002606 512 NYLVYAGAGLTEVQD-VREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVK--LRISDGFLQYMSSLKVLSLSHN 587 (901)
Q Consensus 512 ~~~~~~~~~~~~~~~-~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~~ 587 (901)
.++.....++..+|. +..+.++.||++..|++..+.. ++.++.||++.+..|++ ..+|++.| .+.-|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 466666666666653 4567899999999998876644 78899999999999865 46788855 6999999999999
Q ss_pred CccccCcccccCCCCCCEEeccCCCCcccchh-hhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCC
Q 002606 588 EVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSF 666 (901)
Q Consensus 588 ~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~ 666 (901)
.+.+.|..+.+-+++-.|+||+|+|.++|.. +-+|+.|-.|||++| .++.+|+. +..|..|++|.+++|++...
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf-- 188 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF-- 188 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHH--
Confidence 7899999999999999999999999999987 568999999999999 78999998 89999999999999987554
Q ss_pred CCchhhHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeE
Q 002606 667 DGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVEL 746 (901)
Q Consensus 667 ~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 746 (901)
.+..|..++.|+.|.++... ..+..++.+..-..++..+++++++...+| ..+-++++|+.|+++++ .++.+
T Consensus 189 -----QLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N-~iteL 260 (1255)
T KOG0444|consen 189 -----QLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGN-KITEL 260 (1255)
T ss_pred -----HHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcC-ceeee
Confidence 45666777777777777443 222333333333447778888888776665 46777888999999887 45544
Q ss_pred EecccccccccccccccEEEeecCCCCCCCch-hhccCCccEEEEeccccc-cccccc-Cccc----------Ccccccc
Q 002606 747 KIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTF-LVFASNLKSIEVRSCFAM-EDIISV-GKFA----------DFPEVMA 813 (901)
Q Consensus 747 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l-~~i~~~-~~~~----------~l~~~~~ 813 (901)
..... .-.+|++|+|+.+ .++.+|. +..++.|+.|.+.++..- +.|+.. +.+. .+.-++.
T Consensus 261 ~~~~~------~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 261 NMTEG------EWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred eccHH------HHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 33222 2567788888774 5666653 677777777776654321 111110 0111 1112234
Q ss_pred CCCCCCccceeeccCccccccccCCCCCCCCcceEeecCCcCCcCCCCCCccccccceEEEccccccccceeCC
Q 002606 814 NLNPFAKLQYLQLAGLPNLKSIYWKPLPFSHLKEMSVFNCDKLKKLPLDSNTAKECKLVICGEPDWWKELRWED 887 (901)
Q Consensus 814 ~~~~~~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~c~~L~~Lp~~~n~~~~~l~~~~~~~~~~~~l~~~~ 887 (901)
.+..+++|+.|.|+. +.|.++|....-++.|+.|++++.|+|.-=|- .+-....+...+.+...-.+++...
T Consensus 334 glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK-P~da~~~lefYNIDFSLq~QlrlAG 405 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK-PNDARKKLEFYNIDFSLQHQLRLAG 405 (1255)
T ss_pred hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC-cchhhhcceeeecceehhhHHhhcc
Confidence 567788999999974 88889998888899999999999999975443 3333355555555544444444433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.5e-21 Score=204.70 Aligned_cols=307 Identities=20% Similarity=0.213 Sum_probs=188.5
Q ss_pred cccccccccc-cccEEEEeecCccccccc--CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccc
Q 002606 521 LTEVQDVREW-EKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDI 597 (901)
Q Consensus 521 ~~~~~~~~~~-~~lr~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i 597 (901)
++.+|.+... .++.+|++.+|.|..+.+ +..++.||+|+|+.|.+..++...|..-.++++|+|++|.+.+.--..|
T Consensus 114 Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 114 LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 3344444333 246666666666655433 4556666666666666666665556555666666666663333333456
Q ss_pred cCCCCCCEEeccCCCCcccchh-hhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhh
Q 002606 598 SRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKEL 676 (901)
Q Consensus 598 ~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 676 (901)
.++.+|-+|.|+.|+|+.||.- |++|++|+.|+|..| .+..+.--.|.+|.+|+.|.+..|.+... .-+.+
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL-------~DG~F 265 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL-------DDGAF 265 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc-------cCcce
Confidence 6666666666666666666543 444666666666666 33333222356666666666666654332 12345
Q ss_pred cCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccc
Q 002606 677 LGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQ 756 (901)
Q Consensus 677 ~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 756 (901)
-.|.++++|++..|+...+..-.- -..+.++.|+++.+.+..+..++.+..++|+.|+|+.+ .+.+++...+.
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~---- 338 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFR---- 338 (873)
T ss_pred eeecccceeecccchhhhhhcccc--cccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHH----
Confidence 566777777777666554432111 11236777777777777777777777788888888776 56666555544
Q ss_pred cccccccEEEeecCCCCCCCc--hhhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCcccccc
Q 002606 757 FCFQSLRVVVIDLCIGLKDLT--FLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKS 834 (901)
Q Consensus 757 ~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~ 834 (901)
.+..|+.|.|+++ .+..+. .+..+++|+.|+|+++..--.|. +-...+.++|+|++|.|.+ ++|++
T Consensus 339 -~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IE---------Daa~~f~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 339 -VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE---------DAAVAFNGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred -HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe---------cchhhhccchhhhheeecC-ceeee
Confidence 5777888888874 555553 35677888888888754322221 1112466799999999998 88888
Q ss_pred ccCC-CCCCCCcceEeecCCc
Q 002606 835 IYWK-PLPFSHLKEMSVFNCD 854 (901)
Q Consensus 835 l~~~-~~~l~~L~~L~i~~c~ 854 (901)
|+.. ...+++|+.|++.+.+
T Consensus 407 I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhccCcccceecCCCCc
Confidence 8864 3457888888887643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.7e-21 Score=200.31 Aligned_cols=308 Identities=19% Similarity=0.245 Sum_probs=233.3
Q ss_pred cccccccEEEEeecCcccccccCCCCC-CccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcc-cccCCCCCC
Q 002606 527 VREWEKVRRLSLMENQIKVILGMPRCP-HLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPS-DISRLVSLE 604 (901)
Q Consensus 527 ~~~~~~lr~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~i~~l~~L~ 604 (901)
+.++++++.+++..|.+..+|.+.... +|+.|+|.+|.+..+....+..++.||.||||.| .+..+|. ++..-.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 356678889999999998888876544 5999999999998888888888999999999999 7777664 466668899
Q ss_pred EEeccCCCCcccc-hhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCc
Q 002606 605 LLDLSNSRIRELP-EELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLE 683 (901)
Q Consensus 605 ~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~ 683 (901)
+|+|++|.|+.+- ..|..+.+|..|.|+.| .++.+|..+|.+|++|+.|++..|.+... .-..+.+|++|+
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv-------e~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV-------EGLTFQGLPSLQ 248 (873)
T ss_pred EEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee-------hhhhhcCchhhh
Confidence 9999999999873 45888889999999988 68899988888899999999999886543 234567888888
Q ss_pred EEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEec-ccccccccccccc
Q 002606 684 VLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKID-YKGEAQQFCFQSL 762 (901)
Q Consensus 684 ~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~~~~~~~L 762 (901)
.|.+..|++..+..-... ....+..|.|..+....+....+-++..|+.|+++.+ .++.+..+ |. ..++|
T Consensus 249 nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws------ftqkL 319 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFY--GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS------FTQKL 319 (873)
T ss_pred hhhhhhcCcccccCccee--eecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhh------hcccc
Confidence 888888877666542221 2347888999988887777778888999999999987 45555443 43 47899
Q ss_pred cEEEeecCCCCCCCch--hhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCccccccccC---
Q 002606 763 RVVVIDLCIGLKDLTF--LVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIYW--- 837 (901)
Q Consensus 763 ~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~--- 837 (901)
+.|+|+.+ .++.++. +..|..|+.|.|+++ .+..+-. ..+.++.+|++|+|++ +.|.-...
T Consensus 320 ~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~LdLr~-N~ls~~IEDaa 385 (873)
T KOG4194|consen 320 KELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLDLRS-NELSWCIEDAA 385 (873)
T ss_pred eeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhcCcC-CeEEEEEecch
Confidence 99999985 6777654 778999999999985 3555432 2456789999999986 22221111
Q ss_pred -CCCCCCCcceEeec-------------CCcCCcCCCCCCccc
Q 002606 838 -KPLPFSHLKEMSVF-------------NCDKLKKLPLDSNTA 866 (901)
Q Consensus 838 -~~~~l~~L~~L~i~-------------~c~~L~~Lp~~~n~~ 866 (901)
..+.+++|++|.+. +.+.|+.|.++.|..
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 12236666666554 677888888887764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.3e-21 Score=205.89 Aligned_cols=293 Identities=20% Similarity=0.210 Sum_probs=226.9
Q ss_pred cccccccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCC
Q 002606 525 QDVREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSL 603 (901)
Q Consensus 525 ~~~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L 603 (901)
+++..+..+..|+++.|.+...|. +...+++-+|+|++|++..+|...|-++.-|-+||||+| .+..+|+.+..|.+|
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML 175 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence 355667889999999999988876 678899999999999999999999999999999999999 789999999999999
Q ss_pred CEEeccCCCCccc-chhhhccccccccccccccC-cCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCC
Q 002606 604 ELLDLSNSRIREL-PEELAALVNLKCLNLEYTFD-LAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKH 681 (901)
Q Consensus 604 ~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~~-l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~ 681 (901)
++|+|++|.+... -..+..+++|+.|.+++++. +..+|.. +..|.+|+.++++.|.+.. .+..+-++++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~--------vPecly~l~~ 246 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI--------VPECLYKLRN 246 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc--------chHHHhhhhh
Confidence 9999999976522 02234688999999998753 5678887 8999999999999987643 5677889999
Q ss_pred CcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEeccccccccccccc
Q 002606 682 LEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQS 761 (901)
Q Consensus 682 L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 761 (901)
|+.|+++.|.++.+..- ......+..|+++.+..+.+| +.+.+++.|++|.+.++. +. .++.. .+.+.+.+
T Consensus 247 LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~Nk-L~---FeGiP-SGIGKL~~ 317 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNMT---EGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNK-LT---FEGIP-SGIGKLIQ 317 (1255)
T ss_pred hheeccCcCceeeeecc---HHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCc-cc---ccCCc-cchhhhhh
Confidence 99999998877654322 223347888999999888887 688999999999887652 22 12111 12235778
Q ss_pred ccEEEeecCCCCCCCc-hhhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCccccccccCCCC
Q 002606 762 LRVVVIDLCIGLKDLT-FLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIYWKPL 840 (901)
Q Consensus 762 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 840 (901)
|+.+...++ +++-+| .+..++.|+.|.|+.+..++ ++. .+.-+|.|+.|++...|+|..=|....
T Consensus 318 Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-LPe------------aIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 318 LEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-LPE------------AIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-chh------------hhhhcCCcceeeccCCcCccCCCCcch
Confidence 888888774 677666 48899999999998765443 322 566789999999999999987665443
Q ss_pred CCCCcceEee
Q 002606 841 PFSHLKEMSV 850 (901)
Q Consensus 841 ~l~~L~~L~i 850 (901)
.-.+|+.-.|
T Consensus 384 a~~~lefYNI 393 (1255)
T KOG0444|consen 384 ARKKLEFYNI 393 (1255)
T ss_pred hhhcceeeec
Confidence 3345554443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=4e-18 Score=213.54 Aligned_cols=306 Identities=23% Similarity=0.295 Sum_probs=215.3
Q ss_pred CCccccccccccccccEEEEeecCccccccc-CCCCCCccEEEecCC-cccccCchHHhcCCCCCEEEccCCCccccCcc
Q 002606 518 GAGLTEVQDVREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNN-VKLRISDGFLQYMSSLKVLSLSHNEVLFELPS 595 (901)
Q Consensus 518 ~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~ 595 (901)
+.....+|....+.+++.|++.++.+..++. +..+++|+.|+++++ .+..+|. ++.+++|++|+|++|..+..+|.
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch
Confidence 3334455555566899999999999887754 678999999999887 4566664 77899999999999988899999
Q ss_pred cccCCCCCCEEeccCC-CCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHH
Q 002606 596 DISRLVSLELLDLSNS-RIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVK 674 (901)
Q Consensus 596 ~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 674 (901)
.++++.+|++|++++| .++.+|..+ ++++|++|++++|..+..+|. ..++|++|++.+|.+...+ .
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP--------~ 742 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFP--------S 742 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccc--------c
Confidence 9999999999999997 788999877 899999999999988888775 2468899999988765432 1
Q ss_pred hhcCCCCCcEEEEEeccccchhh----hh-cccccccccceeEecccCC-CcccccCccCcccCCeeecccCCCceeEEe
Q 002606 675 ELLGLKHLEVLSFTLRSSHALKS----FL-TSHQLRSCTQALLLHCFKD-SSLDVSGLADLKQLNRLRIADCPELVELKI 748 (901)
Q Consensus 675 ~L~~L~~L~~L~l~~~~~~~~~~----~~-~~~~l~~~l~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 748 (901)
. ..+++|+.|.+.......+.. +. ........++.|.+++|.. ..+| ..+..+++|+.|++++|..++.++.
T Consensus 743 ~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 743 N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred c-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCC
Confidence 1 145566666554322111100 00 0011224667777776654 3444 4567777888888887777766543
Q ss_pred cccccccccccccccEEEeecCCCCC--------------------CCc-hhhccCCccEEEEecccccccccccCcccC
Q 002606 749 DYKGEAQQFCFQSLRVVVIDLCIGLK--------------------DLT-FLVFASNLKSIEVRSCFAMEDIISVGKFAD 807 (901)
Q Consensus 749 ~~~~~~~~~~~~~L~~L~L~~c~~l~--------------------~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~ 807 (901)
.. .+++|+.|+|++|..+. .+| ++..+++|+.|++++|+.++.++.
T Consensus 821 ~~-------~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~------ 887 (1153)
T PLN03210 821 GI-------NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL------ 887 (1153)
T ss_pred CC-------CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc------
Confidence 32 24555555555554443 333 356678888888888887776543
Q ss_pred ccccccCCCCCCccceeeccCccccccccCCC-------------CCCCCcceEeecCCcCCcCC
Q 002606 808 FPEVMANLNPFAKLQYLQLAGLPNLKSIYWKP-------------LPFSHLKEMSVFNCDKLKKL 859 (901)
Q Consensus 808 l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~-------------~~l~~L~~L~i~~c~~L~~L 859 (901)
....+++|+.|++++|++|+.++... ..+|+...+.+.+|.+|..-
T Consensus 888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCch
Confidence 45678999999999999998776532 12455567788899888743
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=5.8e-19 Score=179.18 Aligned_cols=310 Identities=18% Similarity=0.206 Sum_probs=172.5
Q ss_pred cccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCccccc-CCCCCCEE
Q 002606 529 EWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDIS-RLVSLELL 606 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~-~l~~L~~L 606 (901)
.|+.+++++...|.+..+|. +..+.+|..|+++.|.+..+|. |.++..|..|+++.| .+..+|...+ ++.+|.+|
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceee
Confidence 35667777777776666654 5666777777777777766663 667777777777777 6666776655 67777777
Q ss_pred eccCCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCC----CCCchh-----------
Q 002606 607 DLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGS----FDGDEL----------- 671 (901)
Q Consensus 607 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~----~~~~~~----------- 671 (901)
|++.|+++++|.+++.+++|..||+++| .+..+|.. +++| .|+.|-+.+|++.... .++...
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 7777777777777777777777777766 56677766 6777 6777777766541100 000001
Q ss_pred -------------------hHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccC
Q 002606 672 -------------------MVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQL 732 (901)
Q Consensus 672 -------------------~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L 732 (901)
.......+.+.+.|+++....+.++.-.....-.......+++.+...++| ..+..+..+
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP-k~L~~lkel 413 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP-KRLVELKEL 413 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhh-hhhHHHHHH
Confidence 112222233444455444433333321111111112333444444333333 122222222
Q ss_pred CeeecccCCCceeEEecccccccccccccccEEEeecCCCCCCCch-hhccCCccEEEEecccccccccccCc-------
Q 002606 733 NRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTF-LVFASNLKSIEVRSCFAMEDIISVGK------- 804 (901)
Q Consensus 733 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~------- 804 (901)
.+.-+..+..+. +.+.. ...+++|..|+|+++ .+.++|. ++.+..|+.|+|+.+. ...++.+-.
T Consensus 414 vT~l~lsnn~is-fv~~~-----l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 414 VTDLVLSNNKIS-FVPLE-----LSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLET 485 (565)
T ss_pred HHHHHhhcCccc-cchHH-----HHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHH
Confidence 222222221221 11111 124677777777764 4555553 6667777777777653 222221100
Q ss_pred ----ccCcccccc-CCCCCCccceeeccCccccccccCCCCCCCCcceEeecCCc
Q 002606 805 ----FADFPEVMA-NLNPFAKLQYLQLAGLPNLKSIYWKPLPFSHLKEMSVFNCD 854 (901)
Q Consensus 805 ----~~~l~~~~~-~~~~~~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 854 (901)
...+..+.. .+..+.+|..|+|.+ ..+..+|...+.|.+|++|.+.+.|
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 001111111 367788999999987 8899999988999999999998865
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=3.3e-17 Score=166.59 Aligned_cols=244 Identities=27% Similarity=0.308 Sum_probs=194.2
Q ss_pred ccccccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCC
Q 002606 526 DVREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLE 604 (901)
Q Consensus 526 ~~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 604 (901)
+...+..+..+.+++|....+|+ +..+..+..|+.++|.+..+|+. ...+..|+.|+++.| ...++|++++.+..|.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 44556678888888888877654 67778888888888888888877 667888999999888 6778888999999999
Q ss_pred EEeccCCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcE
Q 002606 605 LLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEV 684 (901)
Q Consensus 605 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~ 684 (901)
.|+..+|++.++|.++.++.+|..|++.+| .+..+|++.+. ++.|++|+...|-+.. .+++++.+..|..
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~t--------lP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLET--------LPPELGGLESLEL 210 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhhc--------CChhhcchhhhHH
Confidence 999999999999999999999999999888 57788877444 8889999888776544 5778888999998
Q ss_pred EEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccccccccccE
Q 002606 685 LSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRV 764 (901)
Q Consensus 685 L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 764 (901)
|++..+.+..++++... +.+..+.++.+..+.++.....++++|..|++.++ .++++|.... .+.+|.+
T Consensus 211 LyL~~Nki~~lPef~gc----s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~c------lLrsL~r 279 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGC----SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEIC------LLRSLER 279 (565)
T ss_pred HHhhhcccccCCCCCcc----HHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHH------Hhhhhhh
Confidence 88888887777765543 36677777777777777667778889999999887 5777665554 3788999
Q ss_pred EEeecCCCCCCCc-hhhccCCccEEEEeccc
Q 002606 765 VVIDLCIGLKDLT-FLVFASNLKSIEVRSCF 794 (901)
Q Consensus 765 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~ 794 (901)
|++++. .++.+| .++.+ +|+.|.+.+++
T Consensus 280 LDlSNN-~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 280 LDLSNN-DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence 999885 566665 48888 88999888877
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=4.5e-14 Score=164.04 Aligned_cols=253 Identities=22% Similarity=0.185 Sum_probs=154.8
Q ss_pred ccEEEEcCCccccccccccccccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCcc
Q 002606 511 ENYLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVL 590 (901)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 590 (901)
...+.....++..+|... ..+++.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|++++| .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-ch
Confidence 444555555566555422 24678888888888777753 47788888888877777642 467888888888 56
Q ss_pred ccCcccccCCCCCCEEeccCCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCch
Q 002606 591 FELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDE 670 (901)
Q Consensus 591 ~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~ 670 (901)
..+|... .+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. . .+|+.|++++|.+...+
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~LP----- 338 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTSLP----- 338 (788)
T ss_pred hhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccccc-----
Confidence 6666432 5677788888888887753 467888888877 56667642 2 35667777777665421
Q ss_pred hhHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecc
Q 002606 671 LMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDY 750 (901)
Q Consensus 671 ~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 750 (901)
. -..+|+.|+++.|.+..++.. ...+..|.++++....++. .+.+|+.|++++| .+..++.
T Consensus 339 ----~--lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N-~Lt~LP~-- 399 (788)
T PRK15387 339 ----T--LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN-RLTSLPV-- 399 (788)
T ss_pred ----c--cccccceEecCCCccCCCCCC------CcccceehhhccccccCcc----cccccceEEecCC-cccCCCC--
Confidence 0 114677777777666655432 2355566666665554442 1245777777665 3333221
Q ss_pred cccccccccccccEEEeecCCCCCCCchhhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCc
Q 002606 751 KGEAQQFCFQSLRVVVIDLCIGLKDLTFLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGL 829 (901)
Q Consensus 751 ~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~ 829 (901)
.+++|+.|+++++ .+..+|.+ ..+|+.|++++|. ++.++. .+..+++|+.|+|+++
T Consensus 400 -------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~------------sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 400 -------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE------------SLIHLSSETTVNLEGN 455 (788)
T ss_pred -------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh------------HHhhccCCCeEECCCC
Confidence 2356777777775 35555532 3456667776643 333322 3455677777777763
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.8e-16 Score=142.62 Aligned_cols=163 Identities=24% Similarity=0.377 Sum_probs=135.2
Q ss_pred cccccccccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCC
Q 002606 523 EVQDVREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLV 601 (901)
Q Consensus 523 ~~~~~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~ 601 (901)
+++.+..++++.+|.++.|.+..+|+ +..+.+|++|++++|.++.+|.. ++.++.|+.|+++-| .+..+|..|+.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCc
Confidence 45666677888999999998877654 78889999999999999888887 788999999999888 6778899999999
Q ss_pred CCCEEeccCCCCc--ccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCC
Q 002606 602 SLELLDLSNSRIR--ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGL 679 (901)
Q Consensus 602 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 679 (901)
-|+.||+++|++. .+|..|..++.|+-|++++| ..+-+|+. ++++++||.|.+..|.+.+ .+.+++.|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~--------lpkeig~l 172 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS--------LPKEIGDL 172 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh--------CcHHHHHH
Confidence 9999999998877 68988888999999999988 56888887 8999999999998876543 56788888
Q ss_pred CCCcEEEEEeccccchhh
Q 002606 680 KHLEVLSFTLRSSHALKS 697 (901)
Q Consensus 680 ~~L~~L~l~~~~~~~~~~ 697 (901)
+.|+.|.+..+....++.
T Consensus 173 t~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHHhcccceeeecCh
Confidence 888888888776655543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=6.3e-16 Score=173.25 Aligned_cols=101 Identities=30% Similarity=0.352 Sum_probs=83.6
Q ss_pred ccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccC
Q 002606 532 KVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSN 610 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~ 610 (901)
++++|++++|.+..+|. +..+++|+.|.++.|.+..+|.. ...+++|++|.|.+| ....+|.++..+++|++|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 58899999998887765 67788999999999988888854 778999999999999 7889999999999999999999
Q ss_pred CCCcccchhhhccccccccccccc
Q 002606 611 SRIRELPEELAALVNLKCLNLEYT 634 (901)
Q Consensus 611 ~~i~~lp~~i~~l~~L~~L~L~~~ 634 (901)
|.+..+|..+..++.+..+..++|
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcc
Confidence 998888877666555555555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=8.1e-14 Score=161.94 Aligned_cols=255 Identities=20% Similarity=0.113 Sum_probs=191.4
Q ss_pred ccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCC
Q 002606 532 KVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNS 611 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 611 (901)
+-..|+++.+.+..+|... .++|+.|.+.+|.++.+|.. +++|++|+|++| .++.+|.. ..+|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4567899999988887622 35899999999999988863 689999999999 67788853 468999999999
Q ss_pred CCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEecc
Q 002606 612 RIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRS 691 (901)
Q Consensus 612 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 691 (901)
.++.+|... .+|+.|++++| .+..+|. .+++|++|++++|.+...+. -..+|+.|.+..|.
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-----------lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLPA-----------LPSELCKLWAYNNQ 333 (788)
T ss_pred chhhhhhch---hhcCEEECcCC-ccccccc----cccccceeECCCCccccCCC-----------CcccccccccccCc
Confidence 999988643 57889999999 6788885 34789999999998765321 11356677777777
Q ss_pred ccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCC
Q 002606 692 SHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCI 771 (901)
Q Consensus 692 ~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 771 (901)
+..++.+ ...|+.|++++|..+.+|. + .++|+.|.++++ .+..++. .+.+|+.|+|+++
T Consensus 334 L~~LP~l------p~~Lq~LdLS~N~Ls~LP~--l--p~~L~~L~Ls~N-~L~~LP~---------l~~~L~~LdLs~N- 392 (788)
T PRK15387 334 LTSLPTL------PSGLQELSVSDNQLASLPT--L--PSELYKLWAYNN-RLTSLPA---------LPSGLKELIVSGN- 392 (788)
T ss_pred ccccccc------ccccceEecCCCccCCCCC--C--Ccccceehhhcc-ccccCcc---------cccccceEEecCC-
Confidence 6665542 2478899999988877763 1 357888888876 4544331 2468999999986
Q ss_pred CCCCCchhhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCccccccccCCCCCCCCcceEeec
Q 002606 772 GLKDLTFLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIYWKPLPFSHLKEMSVF 851 (901)
Q Consensus 772 ~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~l~~L~~L~i~ 851 (901)
.+..+|.. .++|+.|++++|. ++.++. .+.+|+.|++++ ++++.+|.....+++|+.|+++
T Consensus 393 ~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 393 RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence 56666643 4789999999975 443321 134788899988 6788898777788999999998
Q ss_pred CCc
Q 002606 852 NCD 854 (901)
Q Consensus 852 ~c~ 854 (901)
+++
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 864
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-15 Score=168.42 Aligned_cols=128 Identities=25% Similarity=0.334 Sum_probs=87.6
Q ss_pred ccccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEecc
Q 002606 530 WEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLS 609 (901)
Q Consensus 530 ~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 609 (901)
+.++..+....|.+..+. ..-++|+.|+...|.+..+... ..-.+|+++++++| ....+|+.++.+.+|+.|++.
T Consensus 198 ~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred ccchhhhhhhhcccceEE--ecCcchheeeeccCcceeeccc--cccccceeeecchh-hhhcchHHHHhcccceEeccc
Confidence 344444444444443331 1335667777777766544332 23567888888888 677788778888888888888
Q ss_pred CCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCC
Q 002606 610 NSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSG 664 (901)
Q Consensus 610 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~ 664 (901)
+|.++.+|..+...++|+.|.+..| .++.+|+. ..++++|++|++..|.+...
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhcccccc
Confidence 8888888888888888888888777 67778775 66788888888888776443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2e-13 Score=159.92 Aligned_cols=117 Identities=26% Similarity=0.371 Sum_probs=53.7
Q ss_pred ccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCC
Q 002606 532 KVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNS 611 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 611 (901)
.++.|++++|.+..+|.. .+++|++|++++|.+..+|..+ ..+|+.|+|++| .+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 455555555555444431 1234555555555554444332 124555555555 3344444432 24555555555
Q ss_pred CCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccc
Q 002606 612 RIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAI 661 (901)
Q Consensus 612 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~ 661 (901)
+++.+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSL 316 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCcc
Confidence 5555544432 24555555554 34444432 1 12445555555444
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=5.7e-15 Score=133.08 Aligned_cols=143 Identities=24% Similarity=0.355 Sum_probs=123.2
Q ss_pred ccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhhc
Q 002606 543 IKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAA 622 (901)
Q Consensus 543 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 622 (901)
+..++.+.++.++..|.+++|.++.+|+. +..+.+|++|++++| .++++|.+++.|++|+.|+++.|++..+|.+|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 45567777888999999999999999988 788999999999999 7999999999999999999999999999999999
Q ss_pred cccccccccccccCcC-CCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchh
Q 002606 623 LVNLKCLNLEYTFDLA-KIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALK 696 (901)
Q Consensus 623 l~~L~~L~L~~~~~l~-~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 696 (901)
++-|+.||+.+|+.-+ .+|.+ |-.++.|+.|++++|.+.. .+.+.++|++|+.|.+..++..+++
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~--------lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI--------LPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc--------CChhhhhhcceeEEeeccCchhhCc
Confidence 9999999999885333 46655 6789999999999886543 5678899999999999877655544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=4.3e-13 Score=157.13 Aligned_cols=246 Identities=20% Similarity=0.211 Sum_probs=172.1
Q ss_pred ccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCC
Q 002606 532 KVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNS 611 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~ 611 (901)
+...|.+.++.+..+|.. -.++|+.|++.+|.+..+|...+ ++|++|++++| .+..+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 456788888888877762 13689999999999999987643 58999999999 6778887664 47999999999
Q ss_pred CCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEecc
Q 002606 612 RIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRS 691 (901)
Q Consensus 612 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 691 (901)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|++|++++|.++..+ ..+. ++|+.|+++.|.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP--------~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLP--------AHLP--SGITHLNVQSNS 315 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCc--------ccch--hhHHHHHhcCCc
Confidence 9999998875 58999999988 67889875 32 58999999999876532 1111 356777777766
Q ss_pred ccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCC
Q 002606 692 SHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCI 771 (901)
Q Consensus 692 ~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 771 (901)
...++.. +...++.|.+++|..+.++. .+ .++|+.|++++| .+..++.. .+++|+.|+|++|
T Consensus 316 Lt~LP~~-----l~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N-~L~~LP~~--------lp~~L~~LdLs~N- 377 (754)
T PRK15370 316 LTALPET-----LPPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKN-QITVLPET--------LPPTITTLDVSRN- 377 (754)
T ss_pred cccCCcc-----ccccceeccccCCccccCCh-hh--cCcccEEECCCC-CCCcCChh--------hcCCcCEEECCCC-
Confidence 6554421 22467888888887766653 23 268888888887 34444321 2467888888887
Q ss_pred CCCCCch-hhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceeeccCc
Q 002606 772 GLKDLTF-LVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGL 829 (901)
Q Consensus 772 ~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~ 829 (901)
.+..+|. +. ++|+.|++++|. +..++. .+......+|++..|.+.+.
T Consensus 378 ~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~--------sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 378 ALTNLPENLP--AALQIMQASRNN-LVRLPE--------SLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cCCCCCHhHH--HHHHHHhhccCC-cccCch--------hHHHHhhcCCCccEEEeeCC
Confidence 4555553 22 368888888754 444432 11112234577777777663
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-14 Score=147.87 Aligned_cols=277 Identities=19% Similarity=0.160 Sum_probs=159.2
Q ss_pred EEEEcCCccccccccccccccEEEEeecCccccccc--CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCcc
Q 002606 513 YLVYAGAGLTEVQDVREWEKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVL 590 (901)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 590 (901)
.+...+.+++++|.. -......+.+..|.|..+|+ |..+++||.|+|++|.++.|.++.|.+++.|-.|-+.+++.+
T Consensus 50 ~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 344456666666542 22456667777777777765 667777777777777777777777777777766666664466
Q ss_pred ccCcc-cccCCCCCCEEeccCCCCcccc-hhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCC-CCC
Q 002606 591 FELPS-DISRLVSLELLDLSNSRIRELP-EELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSG-SFD 667 (901)
Q Consensus 591 ~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~-~~~ 667 (901)
+.+|+ .|++|..|+.|.+.-|++..++ ..+..|++|..|.+.+| .+..++.+.+..+.+++++.+..|..... ..+
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccc
Confidence 77765 4667777777777777777553 34677777777777777 56677766677777777777766542110 000
Q ss_pred Cc----hhhHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCCCc
Q 002606 668 GD----ELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPEL 743 (901)
Q Consensus 668 ~~----~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 743 (901)
+. ...+.+++...-.....+........+.-.....+......+...++.....|...|..+++|++|+++++ .+
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i 286 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KI 286 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-cc
Confidence 00 00111222221111111111111111100000000111122233333334444456788999999999887 56
Q ss_pred eeEEecccccccccccccccEEEeecCCCCCCCch--hhccCCccEEEEecccccccc
Q 002606 744 VELKIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTF--LVFASNLKSIEVRSCFAMEDI 799 (901)
Q Consensus 744 ~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i 799 (901)
..+...++. ....+++|.|..+ ++..+.. +..++.|+.|+|.++. |+.+
T Consensus 287 ~~i~~~aFe-----~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~-it~~ 337 (498)
T KOG4237|consen 287 TRIEDGAFE-----GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTV 337 (498)
T ss_pred chhhhhhhc-----chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe-eEEE
Confidence 656555555 4778888888774 5666643 6778888888888854 4443
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=5.7e-13 Score=158.51 Aligned_cols=314 Identities=22% Similarity=0.287 Sum_probs=194.2
Q ss_pred ccccccccccccccEEEEeecCc--cccccc--CCCCCCccEEEecCC-cccccCchHHhcCCCCCEEEccCCCccccCc
Q 002606 520 GLTEVQDVREWEKVRRLSLMENQ--IKVILG--MPRCPHLLTLFLNNN-VKLRISDGFLQYMSSLKVLSLSHNEVLFELP 594 (901)
Q Consensus 520 ~~~~~~~~~~~~~lr~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp 594 (901)
....++.....++++.|-+..|. +..++. |..++.||+|++++| .+.++|.. ++++-+||||+|+++ .+..+|
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccccc
Confidence 33344444455679999999886 555555 788999999999988 45666655 899999999999999 788999
Q ss_pred ccccCCCCCCEEeccCCC-CcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhH
Q 002606 595 SDISRLVSLELLDLSNSR-IRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMV 673 (901)
Q Consensus 595 ~~i~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 673 (901)
..+++|..|.|||+..+. +..+|..+..|.+|++|.+.... .......++.+.+|++|....+.+... ...
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~------~~~ 683 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV------LLL 683 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh------HhH
Confidence 999999999999999984 44556667779999999997653 111111244455555554443322111 122
Q ss_pred HhhcCCCCCcEEEEEec-cccchhhhhcccccccccceeEecccCCCccccc-----CccC-cccCCeeecccCCCceeE
Q 002606 674 KELLGLKHLEVLSFTLR-SSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVS-----GLAD-LKQLNRLRIADCPELVEL 746 (901)
Q Consensus 674 ~~L~~L~~L~~L~l~~~-~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~-----~l~~-l~~L~~L~l~~~~~l~~l 746 (901)
..+..++.|..+..... .................++.|.+.+|...+.... .... ++++.++.+.+|....
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-- 761 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-- 761 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc--
Confidence 33334444432221111 0011122222223344777777777766322111 1112 5577777788887776
Q ss_pred EecccccccccccccccEEEeecCCCCCCCch-hhccCCccEEEEecccccccccccCcccCccccccCCCCCCccceee
Q 002606 747 KIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTF-LVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQ 825 (901)
Q Consensus 747 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~l~~~~~~~~~~~~L~~L~ 825 (901)
.+.|.. .+++|+.|.+..|+.++++.+ ...+..+..+.+..+ ...... ...+.+.||++..+.
T Consensus 762 ~l~~~~-----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----------~~~~l~~l~~i~~~~ 825 (889)
T KOG4658|consen 762 DLTWLL-----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----------MLCSLGGLPQLYWLP 825 (889)
T ss_pred ccchhh-----ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce----------eeecCCCCceeEecc
Confidence 344443 589999999999998888754 555666665433322 121110 011344555555555
Q ss_pred ccCccccccccCCC----CCCCCcceEeecCC-cCCcCCCCC
Q 002606 826 LAGLPNLKSIYWKP----LPFSHLKEMSVFNC-DKLKKLPLD 862 (901)
Q Consensus 826 L~~~~~L~~l~~~~----~~l~~L~~L~i~~c-~~L~~Lp~~ 862 (901)
+.+ +.|+.+..+. ..+|.+..+.+.+| +++..+|..
T Consensus 826 l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 826 LSF-LKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cCc-cchhheehhcCcccccCccccccceeccccceeecCCc
Confidence 554 2255444433 45688889999997 889888875
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.1e-10 Score=146.15 Aligned_cols=290 Identities=16% Similarity=0.197 Sum_probs=179.1
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~ 231 (901)
+.+|-|+.-.+++-+ ....+++.|.|++|.||||++.++.... + .++|+++.. +.++..+...++..++
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHH
Confidence 456778766555532 1357899999999999999999987543 1 589999864 4466667777777663
Q ss_pred CCccc-----------cccccHHHHHHHHHHHHc--cCceEEEeccccccc--c-cccccccCCCCCCCcccccccCCCC
Q 002606 232 LLNDT-----------WKNRRIEQKALDIFRILK--KKKFVLLLDDIWQRV--D-LVKVGVPLPSPQKSSESKVKVGDPL 295 (901)
Q Consensus 232 ~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (901)
..... ....+.......+...+. +.+++|||||+.... . .+.+...++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~------------- 150 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP------------- 150 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC-------------
Confidence 11100 001122333444444443 678999999995421 1 112222222212
Q ss_pred CCCCCCCCcEEEEecCChHH---HhhhcCCccEEec----CCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 296 PSPEKSSESKVVFTTRSEEV---CGWMEAHQNFKVA----CLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 296 ~~~~~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
.+.++|||||...- ..........++. +|+.+|+.++|....+..- + .+.+..|.+.|+|.
T Consensus 151 ------~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gw 218 (903)
T PRK04841 151 ------ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGW 218 (903)
T ss_pred ------CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCCh
Confidence 56788899998521 1111123345555 9999999999987765431 1 23578899999999
Q ss_pred hhHHHHHHHHhccCCChHHHHHHHHHHhccccccCCC-CccchhhHhh-hccCCCcchhhhhhhhhccCCCCccccHHHH
Q 002606 369 PLALITIGRAMACKKRPEEWKYAIEVLRTSSSQFAGL-GNEVYPLLKF-SYDNLPNDTIKSCLLYCSLYPEDCLISKENL 446 (901)
Q Consensus 369 PLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~-~~~i~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~l 446 (901)
|+++..++..+....... ......+ .+. ...+...+.- .++.||+ ..+.++...|+++ .++.+ +
T Consensus 219 p~~l~l~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l 284 (903)
T PRK04841 219 ATALQLIALSARQNNSSL--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-L 284 (903)
T ss_pred HHHHHHHHHHHhhCCCch--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-H
Confidence 999999887775432110 0001111 111 1234444433 3789999 7999999999987 33322 2
Q ss_pred HHHHHhcCCCccccccccchhhhhHHHHHHHhccccc-c--CCCceeehhHHHHHHHHHh
Q 002606 447 IDCWIGEGLLNESVKFGVQKEGYHIVGILVRACLLEE-V--GDDDVKLHDVIRDMALWIA 503 (901)
Q Consensus 447 i~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~~~ 503 (901)
.. .+.. .+.+...+++|.+.+++.. . +...|+.|++++++.+...
T Consensus 285 ~~-----~l~~-------~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 285 IV-----RVTG-------EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HH-----HHcC-------CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 21 1111 2345678999999999653 2 2347899999999987654
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=6.3e-10 Score=124.63 Aligned_cols=297 Identities=15% Similarity=0.094 Sum_probs=169.2
Q ss_pred CCcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 152 EPTVVGQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
++.++||+++++++...+.. .....+.|+|++|+|||++++.++++. ......-..+++.+....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 35789999999999998743 344568899999999999999999987 2222223566777777778889999999
Q ss_pred HHhCCCccccccccHHHHHHHHHHHHc--cCceEEEeccccccc------ccccccccCCCCCCCcccccccCCCCCCCC
Q 002606 228 EKIGLLNDTWKNRRIEQKALDIFRILK--KKKFVLLLDDIWQRV------DLVKVGVPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
+++..........+.++....+.+.++ +++.+||||+++.-. .+..+...+....
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------------- 170 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------------- 170 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC-----------------
Confidence 998652211123455667777777775 456899999997532 1112211111110
Q ss_pred CCCCcEEEEecCChHHHhhh-------cCCccEEecCCChHHHHHHHHHHhcC---CccCCChhHHHHHHHHHHHcCCCh
Q 002606 300 KSSESKVVFTTRSEEVCGWM-------EAHQNFKVACLSHNDAWELFQQKVGE---ETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
+....+|.++.+..+.... -....+.+++++.++..+++..++.. .....+..++.+++......|..+
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 0122355555554332211 11346799999999999999987632 111222223334444434356677
Q ss_pred hHHHHHHHHh--c---cC--CChHHHHHHHHHHhccccccCCCCccchhhHhhhccCCCcchhhhhhhhhc-cCCC-Ccc
Q 002606 370 LALITIGRAM--A---CK--KRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLLYCS-LYPE-DCL 440 (901)
Q Consensus 370 Lai~~~g~~l--~---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~ 440 (901)
.|+.++-.+. + +. -+.+..+.+.+.... ....-.+..||. +.|..+..++ .... ...
T Consensus 250 ~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~ 315 (394)
T PRK00411 250 VAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDE 315 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCc
Confidence 7777664332 1 11 134455555544311 223446788998 4444443333 2221 123
Q ss_pred ccHHHHHHHH--HhcCCCccccccccchhhhhHHHHHHHhcccccc
Q 002606 441 ISKENLIDCW--IGEGLLNESVKFGVQKEGYHIVGILVRACLLEEV 484 (901)
Q Consensus 441 i~~~~li~~w--ia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 484 (901)
+....+...- +++.+-.. .-.......|+..|...+++...
T Consensus 316 ~~~~~i~~~y~~l~~~~~~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 316 VTTGEVYEEYKELCEELGYE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ccHHHHHHHHHHHHHHcCCC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 4444444321 22111000 01124456688888888888753
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=3.6e-09 Score=111.91 Aligned_cols=184 Identities=13% Similarity=0.183 Sum_probs=113.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
.+..++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|+..++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 445689999999999999999999887 21 221 22333 33345778899999999887542 2222223333333
Q ss_pred H-----HccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHhhh-----
Q 002606 252 I-----LKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCGWM----- 319 (901)
Q Consensus 252 ~-----l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~----- 319 (901)
. ..+++.++|+||++... .++.+........ .......|++|.... ....+
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~----------------~~~~~~~vvl~g~~~-~~~~l~~~~~ 176 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQT----------------DNAKLLQIFLVGQPE-FRETLQSPQL 176 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCccc----------------CCCCeEEEEEcCCHH-HHHHHcCchh
Confidence 2 26788999999997642 3333321111000 000233455555432 21111
Q ss_pred -----cCCccEEecCCChHHHHHHHHHHhcCCccCCCh-hHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002606 320 -----EAHQNFKVACLSHNDAWELFQQKVGEETLNCHP-EILELARTVAKECGGLPLALITIGRAM 379 (901)
Q Consensus 320 -----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~-~~~~~~~~i~~~c~GlPLai~~~g~~l 379 (901)
.....+++++++.+|..+++...+......... --.+..+.|++.|+|.|..|..++..+
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 113467899999999999998876433211111 124678999999999999999988776
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=5.8e-11 Score=122.88 Aligned_cols=197 Identities=21% Similarity=0.229 Sum_probs=104.1
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHH--------
Q 002606 155 VVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESI-------- 226 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i-------- 226 (901)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+.. +..-..++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 68999999999999988778899999999999999999999876 221113444444343322 222222
Q ss_pred --HHHhCC--Cccc------cccccHHHHHHHHHHHHc--cCceEEEeccccccc-ccc-------cccccCCCCCCCcc
Q 002606 227 --GEKIGL--LNDT------WKNRRIEQKALDIFRILK--KKKFVLLLDDIWQRV-DLV-------KVGVPLPSPQKSSE 286 (901)
Q Consensus 227 --~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~-------~~~~~~~~~~~~~~ 286 (901)
.+.+.. .... ............+.+.++ +++++||+||+.... ... .+...+...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~----- 151 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL----- 151 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH------
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc-----
Confidence 111210 0000 011223344445555554 356999999995543 111 111111110
Q ss_pred cccccCCCCCCCCCCCCcEEEEecCChHHHhh--------hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHH
Q 002606 287 SKVKVGDPLPSPEKSSESKVVFTTRSEEVCGW--------MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELA 358 (901)
Q Consensus 287 ~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 358 (901)
.......+|+++....+... .+....+.+++|+.+++++++...+... ... +.-.+..
T Consensus 152 ------------~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~ 217 (234)
T PF01637_consen 152 ------------LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDI 217 (234)
T ss_dssp ---------------TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHH
T ss_pred ------------cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHH
Confidence 00133445555554544322 2233458999999999999999876543 111 1124456
Q ss_pred HHHHHHcCCChhHHHH
Q 002606 359 RTVAKECGGLPLALIT 374 (901)
Q Consensus 359 ~~i~~~c~GlPLai~~ 374 (901)
++|+..+||+|..|..
T Consensus 218 ~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 218 EEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHTT-HHHHHH
T ss_pred HHHHHHhCCCHHHHhc
Confidence 9999999999998764
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=1.7e-08 Score=111.87 Aligned_cols=302 Identities=14% Similarity=0.117 Sum_probs=168.6
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC---CeEEEEEeCCcCCHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF---DFVIWVVVSKDLQIEKIQES 225 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~ 225 (901)
+.++||++++++|...|.. .....+.|+|++|+|||++++.+++...+..... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999864 3456899999999999999999998762111111 24577777777778889999
Q ss_pred HHHHhC---CCccccccccHHHHHHHHHHHHc--cCceEEEeccccccc-ccccccccCCCCCCCcccccccCCCCCCCC
Q 002606 226 IGEKIG---LLNDTWKNRRIEQKALDIFRILK--KKKFVLLLDDIWQRV-DLVKVGVPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 226 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
|++++. .... ....+..+....+.+.+. +++++||||+++.-. ....+...+.... ... ..
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~-------~~~----~~- 161 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRAR-------SNG----DL- 161 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccc-------ccc----CC-
Confidence 999883 2211 122344555666666663 567899999996541 1111111110000 000 00
Q ss_pred CCCCcEEEEecCChHHHhhh----c---CCccEEecCCChHHHHHHHHHHhcC--CccCCChhHHHHHHHHHHHcCCChh
Q 002606 300 KSSESKVVFTTRSEEVCGWM----E---AHQNFKVACLSHNDAWELFQQKVGE--ETLNCHPEILELARTVAKECGGLPL 370 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~~~~----~---~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPL 370 (901)
.+....+|.+|........+ . ....+.+++.+.++..+++..++.. .....+++..+....++..+.|.|-
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 00223444444433321111 1 1246899999999999999988742 1112334444455667777788885
Q ss_pred HH-HHHHHHh--c---cC--CChHHHHHHHHHHhccccccCCCCccchhhHhhhccCCCcchhhhhhhhhccC--CCCcc
Q 002606 371 AL-ITIGRAM--A---CK--KRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLY--PEDCL 440 (901)
Q Consensus 371 ai-~~~g~~l--~---~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~ 440 (901)
.+ .++-.+. . +. -+.+..+.+.+.+.. ....-++..||. +.+..+..++.. ..+..
T Consensus 242 ~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~ 307 (365)
T TIGR02928 242 KAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDP 307 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 44 3322211 1 11 233344444433311 223345678887 556444443321 13344
Q ss_pred ccHHHHHHHHH--hcCCCccccccccchhhhhHHHHHHHhcccccc
Q 002606 441 ISKENLIDCWI--GEGLLNESVKFGVQKEGYHIVGILVRACLLEEV 484 (901)
Q Consensus 441 i~~~~li~~wi--a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 484 (901)
+...++...+- ++.+ . -....+.....++..|...|++...
T Consensus 308 ~~~~~~~~~y~~~~~~~-~--~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 308 FRTGEVYEVYKEVCEDI-G--VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred ccHHHHHHHHHHHHHhc-C--CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 56666655332 1111 0 0112245667778888888888754
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=4e-12 Score=129.96 Aligned_cols=237 Identities=22% Similarity=0.201 Sum_probs=169.7
Q ss_pred ccccccccEEEEeecCccccccc--CCCCCCccEEEecC-CcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCC
Q 002606 526 DVREWEKVRRLSLMENQIKVILG--MPRCPHLLTLFLNN-NVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVS 602 (901)
Q Consensus 526 ~~~~~~~lr~l~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~ 602 (901)
.+..++++|+|+++.|.|+.+.+ |..++.+.+|.+.+ |.++.++.+.|.++..|+-|.+.-|.........+..|++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 35667899999999999988754 77888888877765 8999999999999999999999988555556678999999
Q ss_pred CCEEeccCCCCcccch-hhhccccccccccccccC------------cCCCCccccCCCcccceeecccccc--------
Q 002606 603 LELLDLSNSRIRELPE-ELAALVNLKCLNLEYTFD------------LAKIPWNLISNFSRLHVLRMFGNAI-------- 661 (901)
Q Consensus 603 L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~------------l~~lp~~~i~~l~~L~~L~l~~n~~-------- 661 (901)
|..|.+-.|.+..++. ++..+..++++.+..|.. +...|.. +++.....-..+.+..+
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhh
Confidence 9999999999999988 688999999999876641 1111211 23332222222222111
Q ss_pred -----------cCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhhhhcccccccccceeEecccCCCcccccCccCcc
Q 002606 662 -----------RSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLK 730 (901)
Q Consensus 662 -----------~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~ 730 (901)
.............-+..|++|++|+++.|.+..+..-... -...++.|.|..+....+....|.++.
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcchHHHHHHHhhhccc
Confidence 0111112233455688999999999998888776543222 124788888988888777777888999
Q ss_pred cCCeeecccCCCceeEEecccccccccccccccEEEeecCC
Q 002606 731 QLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCI 771 (901)
Q Consensus 731 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 771 (901)
.|+.|++.++ .++.+.+..+. .+.+|.+|.|-.++
T Consensus 323 ~L~tL~L~~N-~it~~~~~aF~-----~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 323 GLKTLSLYDN-QITTVAPGAFQ-----TLFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeecCC-eeEEEeccccc-----ccceeeeeehccCc
Confidence 9999999987 45555444443 46788888886544
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=3.9e-09 Score=119.38 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=184.9
Q ss_pred cccchhHHHHHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhC
Q 002606 154 TVVGQQSQLEQVWKCLVEG-SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIG 231 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~ 231 (901)
..|-|. ++++.|... +.+.+.|..++|.|||||+.+..... ..-..+.|.+.+.. .++..+..-++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 345555 455555554 78999999999999999999997633 34457999997764 467788888877775
Q ss_pred CCccc-----------cccccHHHHHHHHHHHHcc--CceEEEecccccc--c----ccccccccCCCCCCCcccccccC
Q 002606 232 LLNDT-----------WKNRRIEQKALDIFRILKK--KKFVLLLDDIWQR--V----DLVKVGVPLPSPQKSSESKVKVG 292 (901)
Q Consensus 232 ~~~~~-----------~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~--~----~~~~~~~~~~~~~~~~~~~~~~~ 292 (901)
.-.+. ....+...+...+...+.. ++..+||||..-. . .+..+....|
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P------------- 158 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP------------- 158 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC-------------
Confidence 22111 1223344455555555543 6899999997422 1 1222233333
Q ss_pred CCCCCCCCCCCcEEEEecCChHH---HhhhcCCccEEec----CCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHc
Q 002606 293 DPLPSPEKSSESKVVFTTRSEEV---CGWMEAHQNFKVA----CLSHNDAWELFQQKVGEETLNCHPEILELARTVAKEC 365 (901)
Q Consensus 293 ~~~~~~~~~~gs~iiiTtR~~~v---~~~~~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 365 (901)
.+-..|||||+..- +..--.+..+++. .++.+|+-++|....+..- . +.-++.+.+..
T Consensus 159 ---------~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L--d----~~~~~~L~~~t 223 (894)
T COG2909 159 ---------ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL--D----AADLKALYDRT 223 (894)
T ss_pred ---------CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC--C----hHHHHHHHhhc
Confidence 67899999998842 2211112233332 4889999999998764332 1 23478999999
Q ss_pred CCChhHHHHHHHHhccCCChHHHHHHHHHHhccccccCCCCccchh-hHhhhccCCCcchhhhhhhhhccCCCCccccHH
Q 002606 366 GGLPLALITIGRAMACKKRPEEWKYAIEVLRTSSSQFAGLGNEVYP-LLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKE 444 (901)
Q Consensus 366 ~GlPLai~~~g~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~ 444 (901)
+|-+-|+..++=.++.+.+.+.-...+ .+..+-+.. ...--++.||+ .++.+++-||+++.=. .
T Consensus 224 eGW~~al~L~aLa~~~~~~~~q~~~~L----------sG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~ 288 (894)
T COG2909 224 EGWAAALQLIALALRNNTSAEQSLRGL----------SGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----D 288 (894)
T ss_pred ccHHHHHHHHHHHccCCCcHHHHhhhc----------cchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----H
Confidence 999999999888887433332211111 111111211 22234789999 7999999999987521 2
Q ss_pred HHHHHHHhcCCCccccccccchhhhhHHHHHHHhcccccc---CCCceeehhHHHHHHHHHh
Q 002606 445 NLIDCWIGEGLLNESVKFGVQKEGYHIVGILVRACLLEEV---GDDDVKLHDVIRDMALWIA 503 (901)
Q Consensus 445 ~li~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~ 503 (901)
.|+..- +-++.+...+++|.+++|+-.. ...-|+.|.++.+|.+.-.
T Consensus 289 eL~~~L------------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 289 ELCNAL------------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred HHHHHH------------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 222221 2356778889999999988654 6778999999999986543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.9e-10 Score=109.93 Aligned_cols=140 Identities=30% Similarity=0.359 Sum_probs=50.6
Q ss_pred cCcccccccCCCCCCccEEEecCCcccccCchHHh-cCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccch
Q 002606 540 ENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQ-YMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPE 618 (901)
Q Consensus 540 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~ 618 (901)
.+.+...+.+.++.+++.|+|.+|.+..+.. ++ .+.+|++|+|++| .+..++ .+..+++|++|++++|.|++++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3445556666677778888888887776643 33 5778888888888 666765 67788888888888888888866
Q ss_pred hh-hccccccccccccccCcCCCCc-cccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEE
Q 002606 619 EL-AALVNLKCLNLEYTFDLAKIPW-NLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFT 688 (901)
Q Consensus 619 ~i-~~l~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 688 (901)
.+ ..+++|++|++++| .+..+.. ..+..+++|++|++.+|++... ......-+..+++|+.||-.
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCCE
Confidence 55 46888888888887 4554432 1266788899999998887542 12244556677888877654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=5.1e-09 Score=113.45 Aligned_cols=273 Identities=12% Similarity=0.111 Sum_probs=142.7
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
.+|+|+++.++.+..++.. .....+.|+|++|+||||+|+.+++.. ...+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHHHHH
Confidence 4689999999998877752 345678899999999999999999987 2222 1222111 11112222233
Q ss_pred HHhCCCc----cccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCC
Q 002606 228 EKIGLLN----DTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSE 303 (901)
Q Consensus 228 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (901)
..+.... ++....+ ....+.+...+.+.+..+|+|+..+...+. ..+| +.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----------------------~~ 151 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----------------------PF 151 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----------------------Cc
Confidence 2221110 0000000 011122333334444444444432221110 0011 34
Q ss_pred cEEEEecCChHHHhhhc--CCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhcc
Q 002606 304 SKVVFTTRSEEVCGWME--AHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMAC 381 (901)
Q Consensus 304 s~iiiTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~ 381 (901)
+-|..|||...+..... ....+++++++.++..+++.+.+.......++ +.+..|++.|+|.|-.+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDE---EGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 55666777554432221 13468999999999999999988765433333 4688999999999965555444321
Q ss_pred CCChHHHHHHHHHHhccccccCCCCccchhhHhhhccCCCcchhhhhhh-hhccCCCCccccHHHHHHHHHhcCCCcccc
Q 002606 382 KKRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLL-YCSLYPEDCLISKENLIDCWIGEGLLNESV 460 (901)
Q Consensus 382 ~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~wia~g~i~~~~ 460 (901)
.|.... ....-. ...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... |
T Consensus 228 -----~~a~~~---~~~~I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g------ 287 (328)
T PRK00080 228 -----DFAQVK---GDGVIT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G------ 287 (328)
T ss_pred -----HHHHHc---CCCCCC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C------
Confidence 111100 000000 00001233445566777877 4444443 56667655 45555443221 1
Q ss_pred ccccchhhhhHHH-HHHHhcccccc
Q 002606 461 KFGVQKEGYHIVG-ILVRACLLEEV 484 (901)
Q Consensus 461 ~~~~~~~~~~~~~-~L~~~~ll~~~ 484 (901)
...+.++..++ .|++.+|++..
T Consensus 288 --~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 288 --EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred --CCcchHHHHhhHHHHHcCCcccC
Confidence 11234444556 78999998765
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=6.2e-11 Score=129.08 Aligned_cols=128 Identities=25% Similarity=0.200 Sum_probs=57.8
Q ss_pred ccEEEEeecCcccc-----ccc-CCCCCCccEEEecCCcccccC------chHHhcCCCCCEEEccCCCccccCcccccC
Q 002606 532 KVRRLSLMENQIKV-----ILG-MPRCPHLLTLFLNNNVKLRIS------DGFLQYMSSLKVLSLSHNEVLFELPSDISR 599 (901)
Q Consensus 532 ~lr~l~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~ 599 (901)
.++.+.+.++.+.. ++. +...+.++.|.+.++.+...+ ...+..+++|++|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45555555555421 211 234455556655555433111 122444556666666655333233333333
Q ss_pred CCC---CCEEeccCCCCc-----ccchhhhcc-ccccccccccccCcC-----CCCccccCCCcccceeecccccc
Q 002606 600 LVS---LELLDLSNSRIR-----ELPEELAAL-VNLKCLNLEYTFDLA-----KIPWNLISNFSRLHVLRMFGNAI 661 (901)
Q Consensus 600 l~~---L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~L~~~~~l~-----~lp~~~i~~l~~L~~L~l~~n~~ 661 (901)
+.+ |++|++++|.+. .++..+..+ ++|+.|++++|. +. .++.. +..+++|++|++.+|.+
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 333 666666655544 122334444 555555555553 22 11111 33445555555555543
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=2.2e-08 Score=107.89 Aligned_cols=265 Identities=14% Similarity=0.116 Sum_probs=144.8
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
.+|||+++.++.+..++.. +....+.++|++|+|||+||+.+.+.. ...+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHH
Confidence 3589999999999888863 345568899999999999999999887 2222 12221111111222 2222
Q ss_pred HHhCCCc----cccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCC
Q 002606 228 EKIGLLN----DTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSE 303 (901)
Q Consensus 228 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (901)
..++... ++.+..+ ....+.+...+.+.+..+|+|+..+...+.. .+| +.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~----------------------~~ 130 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP----------------------PF 130 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC----------------------Ce
Confidence 2222110 0000001 1122334445555555556655433322211 111 34
Q ss_pred cEEEEecCChHHHhhhc--CCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhc-
Q 002606 304 SKVVFTTRSEEVCGWME--AHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMA- 380 (901)
Q Consensus 304 s~iiiTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~- 380 (901)
+-|..||+...+..... ....+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+.
T Consensus 131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56666777654433211 1346799999999999999998875433333 34578899999999976655554321
Q ss_pred -----cC--CChHHHHHHHHHHhccccccCCCCccchhhHhhhccCCCcchhhhhhh-hhccCCCCccccHHHHHHHHHh
Q 002606 381 -----CK--KRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLL-YCSLYPEDCLISKENLIDCWIG 452 (901)
Q Consensus 381 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~wia 452 (901)
.. -+.+..+ .....+...|..++. +.+..+. ..+.++.+ .+..+.+....
T Consensus 208 ~a~~~~~~~it~~~v~------------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l-- 265 (305)
T TIGR00635 208 FAQVRGQKIINRDIAL------------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL-- 265 (305)
T ss_pred HHHHcCCCCcCHHHHH------------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh--
Confidence 00 0111111 122224556778887 4444444 44556433 34443333211
Q ss_pred cCCCccccccccchhhhhHHH-HHHHhcccccc
Q 002606 453 EGLLNESVKFGVQKEGYHIVG-ILVRACLLEEV 484 (901)
Q Consensus 453 ~g~i~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 484 (901)
| .....+...++ .|++++|+...
T Consensus 266 -g--------~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 266 -G--------EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred -C--------CCcchHHHhhhHHHHHcCCcccC
Confidence 1 12345556677 69999999765
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=1.6e-10 Score=125.88 Aligned_cols=138 Identities=25% Similarity=0.235 Sum_probs=79.1
Q ss_pred CCCCCccEEEecCCccccc----CchHHhcCCCCCEEEccCCCcc------ccCcccccCCCCCCEEeccCCCCc-ccch
Q 002606 550 PRCPHLLTLFLNNNVKLRI----SDGFLQYMSSLKVLSLSHNEVL------FELPSDISRLVSLELLDLSNSRIR-ELPE 618 (901)
Q Consensus 550 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~------~~lp~~i~~l~~L~~L~l~~~~i~-~lp~ 618 (901)
..+++|+.|.+.++.+... ....+...+.|+.|+++++... ..++..+..+.+|++|++++|.+. ..+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3455577888877765321 1222455667778887776322 123445666777888888777665 3444
Q ss_pred hhhcccc---ccccccccccCcCC-----CCccccCCC-cccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEe
Q 002606 619 ELAALVN---LKCLNLEYTFDLAK-----IPWNLISNF-SRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTL 689 (901)
Q Consensus 619 ~i~~l~~---L~~L~L~~~~~l~~-----lp~~~i~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 689 (901)
.+..+.+ |++|++++|. +.. +... +..+ ++|+.|++++|.++... .......+..+++|+.|++..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHHHHHHHHhCCCcCEEECcC
Confidence 5555554 7777777773 331 1111 3455 67777777777654321 112344555666777777665
Q ss_pred ccc
Q 002606 690 RSS 692 (901)
Q Consensus 690 ~~~ 692 (901)
+..
T Consensus 175 n~l 177 (319)
T cd00116 175 NGI 177 (319)
T ss_pred CCC
Confidence 543
No 35
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=6.6e-09 Score=101.01 Aligned_cols=142 Identities=16% Similarity=0.268 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCC----CCeEEEEEeCCcCCHH---HHHHHHHHHhCCCccccccccHHHHHH
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTD----FDFVIWVVVSKDLQIE---KIQESIGEKIGLLNDTWKNRRIEQKAL 247 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 247 (901)
+++.|+|.+|+||||+++.++.... .... +...+|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5899999999999999999998873 2222 4567777765544332 34444444432211 11111
Q ss_pred HHHH-HHccCceEEEeccccccccc---------cc-ccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHH-
Q 002606 248 DIFR-ILKKKKFVLLLDDIWQRVDL---------VK-VGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEV- 315 (901)
Q Consensus 248 ~l~~-~l~~kr~LlVlDdv~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v- 315 (901)
.+.. .-+.++++||+|++++-..- .. +...++... -.+.++|||+|....
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~------------------~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL------------------PPGVKLIITSRPRAFP 133 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc------------------CCCCeEEEEEcCChHH
Confidence 1112 22578999999999654321 11 111111100 168999999998866
Q ss_pred --HhhhcCCccEEecCCChHHHHHHHHHHh
Q 002606 316 --CGWMEAHQNFKVACLSHNDAWELFQQKV 343 (901)
Q Consensus 316 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 343 (901)
.........+++.+|++++..+++.+..
T Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 134 DLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred HHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 3333445679999999999999998765
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.84 E-value=3.5e-08 Score=102.70 Aligned_cols=167 Identities=20% Similarity=0.234 Sum_probs=101.7
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLL 233 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 233 (901)
+++|.+..+. .++..+...-..+||++|+||||||+.+.... ...|. .++-..+-.+-++.++
T Consensus 31 HLlg~~~~lr---r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i~------ 93 (436)
T COG2256 31 HLLGEGKPLR---RAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREII------ 93 (436)
T ss_pred hhhCCCchHH---HHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHHH------
Confidence 4444444444 44456778888899999999999999998876 44553 2222222122222222
Q ss_pred ccccccccHHHHHHHH-HHHHccCceEEEeccccc--ccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEE--
Q 002606 234 NDTWKNRRIEQKALDI-FRILKKKKFVLLLDDIWQ--RVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVF-- 308 (901)
Q Consensus 234 ~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iii-- 308 (901)
+.- .....+++.+|++|.|.. ..+.+.+ +|... +|.-|+|
T Consensus 94 -------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE-------------------~G~iilIGA 138 (436)
T COG2256 94 -------------EEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVE-------------------NGTIILIGA 138 (436)
T ss_pred -------------HHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhc-------------------CCeEEEEec
Confidence 222 123348999999999943 3333333 33333 6777777
Q ss_pred ecCChHH---HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCC---ChhH-HHHHHHHHHHcCCChhHH
Q 002606 309 TTRSEEV---CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNC---HPEI-LELARTVAKECGGLPLAL 372 (901)
Q Consensus 309 TtR~~~v---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~---~~~~-~~~~~~i~~~c~GlPLai 372 (901)
||.+... ....+...++.+++|+.++-.+++.+.+-.....- ...+ ++.-..++..++|---++
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 7777643 23345568999999999999999998443221111 1111 335667888888876443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=6.2e-09 Score=99.53 Aligned_cols=130 Identities=30% Similarity=0.330 Sum_probs=53.4
Q ss_pred cccccccccEEEEeecCcccccccCC-CCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccc-cCCCC
Q 002606 525 QDVREWEKVRRLSLMENQIKVILGMP-RCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDI-SRLVS 602 (901)
Q Consensus 525 ~~~~~~~~lr~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i-~~l~~ 602 (901)
+...+..+++.|++.+|.++.+..+. .+.+|+.|++++|.+..+.. +..+++|++|++++| .+..++..+ ..+++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 33444567899999999999888776 58899999999999988865 778999999999999 677776555 46899
Q ss_pred CCEEeccCCCCcccc--hhhhccccccccccccccCcCCCCc---cccCCCcccceeeccc
Q 002606 603 LELLDLSNSRIRELP--EELAALVNLKCLNLEYTFDLAKIPW---NLISNFSRLHVLRMFG 658 (901)
Q Consensus 603 L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~---~~i~~l~~L~~L~l~~ 658 (901)
|++|++++|+|..+- ..+..+++|+.|++.+|. +...+. .++..+++|+.|+-..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 999999999887552 457789999999999985 343332 2467889999998754
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=5.2e-08 Score=99.43 Aligned_cols=154 Identities=13% Similarity=0.173 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..+.+.|+|++|+|||+|++.+++... .....+.|+.+... ..... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhhH-----------------------HHHhh
Confidence 446789999999999999999999872 22334567765311 00000 11112
Q ss_pred HccCceEEEecccccc---ccccc-ccccCCCCCCCcccccccCCCCCCCCCCCCcEEE-EecCC---------hHHHhh
Q 002606 253 LKKKKFVLLLDDIWQR---VDLVK-VGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVV-FTTRS---------EEVCGW 318 (901)
Q Consensus 253 l~~kr~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ii-iTtR~---------~~v~~~ 318 (901)
+. +.-+||+||+|.. .+|+. +...+.... ..|+.+| +|++. +++.+.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~------------------~~~~~illits~~~p~~l~~~~~~L~sR 149 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK------------------EQGKTLLLISADCSPHALSIKLPDLASR 149 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHH------------------HcCCcEEEEeCCCChHHccccchhHHHH
Confidence 22 2348999999863 33442 211111111 0355554 45543 356666
Q ss_pred hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 002606 319 MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGR 377 (901)
Q Consensus 319 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~ 377 (901)
+.....++++++++++.++++++.+.......+ ++...-|++.+.|..-++..+-.
T Consensus 150 l~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 150 LTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 667788999999999999999998875543333 34677888888877665544433
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.9e-10 Score=121.87 Aligned_cols=121 Identities=26% Similarity=0.364 Sum_probs=56.1
Q ss_pred EEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCC
Q 002606 535 RLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI 613 (901)
Q Consensus 535 ~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i 613 (901)
..+++.|.+..+|. +..|..|..+.+..|.+..+|.. ++.+..|.+|||+.| .+..+|..++.|+ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCcc
Confidence 34444444444432 33344444444444444444433 344444555555544 3444444444443 44444445555
Q ss_pred cccchhhhccccccccccccccCcCCCCccccCCCcccceeeccccc
Q 002606 614 RELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNA 660 (901)
Q Consensus 614 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~ 660 (901)
+.+|..++.+..|.+||.+.| .+..+|.. ++.+.+|+.|.+..|.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNH 200 (722)
T ss_pred ccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhh
Confidence 555444444444455554444 34444443 4444444444444443
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=7.7e-08 Score=115.68 Aligned_cols=310 Identities=17% Similarity=0.220 Sum_probs=173.7
Q ss_pred ccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCC---HHHHHHHHHH
Q 002606 155 VVGQQSQLEQVWKCLVE---GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQ---IEKIQESIGE 228 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~---~~~~~~~i~~ 228 (901)
++||+.+++.|...+.+ +...++.+.|.+|||||++++.|.....+.++.|-...+-....+.. ....+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998875 56679999999999999999999988743323222112212222222 2233344444
Q ss_pred Hh-------------------CCCccc--------------------cccccHHHHH-----HHHHHHH-ccCceEEEec
Q 002606 229 KI-------------------GLLNDT--------------------WKNRRIEQKA-----LDIFRIL-KKKKFVLLLD 263 (901)
Q Consensus 229 ~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~kr~LlVlD 263 (901)
++ +..... ........+. ..+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111000 0001111111 1122222 3469999999
Q ss_pred cc-ccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEE--ecCCh--HHHhhhcCCccEEecCCChHHHHHH
Q 002606 264 DI-WQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVF--TTRSE--EVCGWMEAHQNFKVACLSHNDAWEL 338 (901)
Q Consensus 264 dv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iii--TtR~~--~v~~~~~~~~~~~l~~L~~~ea~~L 338 (901)
|+ |-+..-.++...+-... .+|.+ ....|.. |.+.. .+-........|.|.||+..+...+
T Consensus 162 DlhWaD~~SL~lL~~lm~~~-------~~~~~-------~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~l 227 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRI-------AIGAY-------RDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQL 227 (849)
T ss_pred cccccChhHHHHHHHHHHhc-------chhhh-------hccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHH
Confidence 99 65432111111110000 00000 1123333 22322 2222223456899999999999999
Q ss_pred HHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhccC------CChHHHHHHHHHHhccccccCCCCccchhh
Q 002606 339 FQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMACK------KRPEEWKYAIEVLRTSSSQFAGLGNEVYPL 412 (901)
Q Consensus 339 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~ 412 (901)
.....+..... ..+..+.|+++..|+|+.+..+-..+... .+...|..-...+.. ....+ .+...
T Consensus 228 V~~~l~~~~~~----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~~-~vv~~ 298 (849)
T COG3899 228 VAATLGCTKLL----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATTD-AVVEF 298 (849)
T ss_pred HHHHhCCcccc----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhhH-HHHHH
Confidence 99988764322 23468999999999999999988888753 344455543222221 11122 35556
Q ss_pred HhhhccCCCcchhhhhhhhhccCCCCccccHHHHHHHHHhcCCCccccccccchhhhhHHHHHHHhcccccc-------C
Q 002606 413 LKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGLLNESVKFGVQKEGYHIVGILVRACLLEEV-------G 485 (901)
Q Consensus 413 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~ 485 (901)
+..-.+.||. ..+..+-..|++...+. ...|-..|-. ....++...++.|.....+-.. .
T Consensus 299 l~~rl~kL~~-~t~~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~ 365 (849)
T COG3899 299 LAARLQKLPG-TTREVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSN 365 (849)
T ss_pred HHHHHhcCCH-HHHHHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccc
Confidence 8888999999 79999999999876554 3444333311 1123444444555444444321 1
Q ss_pred CC---ceeehhHHHHHHH
Q 002606 486 DD---DVKLHDVIRDMAL 500 (901)
Q Consensus 486 ~~---~~~mHdlv~d~a~ 500 (901)
.. +-..||++++.|-
T Consensus 366 ~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 366 VDIATYKFLHDRVQQAAY 383 (849)
T ss_pred cchhhHHhhHHHHHHHHh
Confidence 11 2267888888773
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.3e-10 Score=122.60 Aligned_cols=188 Identities=27% Similarity=0.292 Sum_probs=150.7
Q ss_pred EEeecCcccccccC---CCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCC
Q 002606 536 LSLMENQIKVILGM---PRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSR 612 (901)
Q Consensus 536 l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~ 612 (901)
|.+++..+..+|-- ..+.--...+++.|.+..+|.. ++.+-.|..|.|+.| .+..+|..++++..|.+|+|+.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 44444444444321 2334445678888888888877 677888999999998 788999999999999999999999
Q ss_pred CcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccc
Q 002606 613 IRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSS 692 (901)
Q Consensus 613 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 692 (901)
+..+|..++.|+ |+.|-+++| +++.+|.+ ++.+..|.+|+.+.|.+.. .+..++.|..|+.|.+..+..
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s--------lpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS--------LPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh--------chHHhhhHHHHHHHHHhhhhh
Confidence 999999999886 899999888 78999998 8999999999999988755 678889999999998887776
Q ss_pred cchhhhhcccccccccceeEecccCCCcccccCccCcccCCeeecccCC
Q 002606 693 HALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCP 741 (901)
Q Consensus 693 ~~~~~~~~~~~l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 741 (901)
..++.-+... .|..|+++||....+|. .|.+|++|+.|.|.+++
T Consensus 202 ~~lp~El~~L----pLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 202 EDLPEELCSL----PLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhCCHHHhCC----ceeeeecccCceeecch-hhhhhhhheeeeeccCC
Confidence 6665433322 56788889998888874 78889999999998875
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=2.1e-06 Score=98.48 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=120.7
Q ss_pred CCcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhccc--CCCCC--eEEEEEeCCcCCHHHH
Q 002606 152 EPTVVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFLQS--STDFD--FVIWVVVSKDLQIEKI 222 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~~~~~~~~~~ 222 (901)
++.+.|||+++++|...|.. +...++.|+|++|+|||+.++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 34678999999999988864 233578899999999999999998876211 11222 3567777776788899
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHHc---cCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCC
Q 002606 223 QESIGEKIGLLNDTWKNRRIEQKALDIFRILK---KKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPS 297 (901)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (901)
+..|++++..... .......+....+...+. +...+||||+|+.-. .-+.+...+....
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--------------- 897 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--------------- 897 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh---------------
Confidence 9999998843321 122333445555665552 234589999996421 1011111111000
Q ss_pred CCCCCCcEEEE--ecCChH--------HHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChh-HHHHHHHHHHHcC
Q 002606 298 PEKSSESKVVF--TTRSEE--------VCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPE-ILELARTVAKECG 366 (901)
Q Consensus 298 ~~~~~gs~iii--TtR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~-~~~~~~~i~~~c~ 366 (901)
..+++|+| +|.+.+ +...++ ...+..++.+.++-.+++.+++.......+++ ++-+|+.++...|
T Consensus 898 ---~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG 973 (1164)
T PTZ00112 898 ---KINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG 973 (1164)
T ss_pred ---ccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC
Confidence 03445444 333222 222222 23466799999999999999886432122233 3334444444444
Q ss_pred CChhHHHHHHHHh
Q 002606 367 GLPLALITIGRAM 379 (901)
Q Consensus 367 GlPLai~~~g~~l 379 (901)
-.=.||.++-.+.
T Consensus 974 DARKALDILRrAg 986 (1164)
T PTZ00112 974 DIRKALQICRKAF 986 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544433
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.67 E-value=2.5e-07 Score=103.33 Aligned_cols=176 Identities=19% Similarity=0.184 Sum_probs=105.3
Q ss_pred CcccchhHHHHH---HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQ---VWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEK 229 (901)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 229 (901)
.++||.+..+.. +..++..+....+.++|++|+||||+|+.+++.. ...| +.++.......-.+.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~- 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE- 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH-
Confidence 357898887666 7777777777788899999999999999998876 3333 222221111111111211
Q ss_pred hCCCccccccccHHHHHHHHHHH-HccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEE
Q 002606 230 IGLLNDTWKNRRIEQKALDIFRI-LKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKV 306 (901)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~i 306 (901)
..... ..+++.+|++|+++.- ...+.+...+. .|..+
T Consensus 83 ------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----------------------~~~ii 122 (413)
T PRK13342 83 ------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----------------------DGTIT 122 (413)
T ss_pred ------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----------------------cCcEE
Confidence 11111 2457889999999753 22333333222 34444
Q ss_pred EE--ecCChH--H-HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 002606 307 VF--TTRSEE--V-CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGR 377 (901)
Q Consensus 307 ii--TtR~~~--v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~ 377 (901)
+| ||.+.. + .........+.+.+++.++..+++.+.+........+--.+..+.|++.|+|.|..+..+..
T Consensus 123 lI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 123 LIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44 344432 1 12223346789999999999999998754321000011235678889999999976654433
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.63 E-value=4.1e-07 Score=93.38 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc
Q 002606 158 QQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW 237 (901)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 237 (901)
.+..++.+.+++.......|.|+|+.|+|||+||+.+++... ......+++.++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455677777776666677899999999999999999998862 2233455665432210 00
Q ss_pred ccccHHHHHHHHHHHHccCceEEEeccccccc---ccc-cccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh
Q 002606 238 KNRRIEQKALDIFRILKKKKFVLLLDDIWQRV---DLV-KVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE 313 (901)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~ 313 (901)
..+.+.+.+ .-+||+||++... .|. .+...+.... ..+..+|+||+..
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~------------------~~~~~iIits~~~ 133 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVR------------------EAGGRLLIAGRAA 133 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHH------------------HcCCeEEEECCCC
Confidence 011122222 2389999996432 222 2222221100 0345788888753
Q ss_pred H---------HHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHH
Q 002606 314 E---------VCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRA 378 (901)
Q Consensus 314 ~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 378 (901)
. +...+.....+++.++++++...++++.+.......+ .+..+.+++.+.|.|..+..+...
T Consensus 134 ~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 134 PAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 2 2223333467899999999999999876543222222 245677788889988877655433
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=8.1e-09 Score=102.09 Aligned_cols=131 Identities=28% Similarity=0.398 Sum_probs=97.3
Q ss_pred ccccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEE
Q 002606 528 REWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELL 606 (901)
Q Consensus 528 ~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L 606 (901)
..|..+..+++++|.|..+.. ..-.|.+|.|++++|.+..+.. +..+++|..||||+| .+.++-..=.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 346778888888888877654 3446788888888887766655 667888888888888 555554344456778888
Q ss_pred eccCCCCcccchhhhccccccccccccccCcCCCCc-cccCCCcccceeecccccccC
Q 002606 607 DLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPW-NLISNFSRLHVLRMFGNAIRS 663 (901)
Q Consensus 607 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~n~~~~ 663 (901)
.|++|.|..| +++++|.+|..||+++| .++.+.. ..|++|+.|++|.+.+|++..
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888888888 57888888888888888 4555542 127888888888888887654
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=4.9e-08 Score=109.51 Aligned_cols=121 Identities=32% Similarity=0.396 Sum_probs=80.8
Q ss_pred EEeecCcc-cccccCCCCCCccEEEecCCcccccCchHHhcCC-CCCEEEccCCCccccCcccccCCCCCCEEeccCCCC
Q 002606 536 LSLMENQI-KVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMS-SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRI 613 (901)
Q Consensus 536 l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i 613 (901)
+....+.+ .........+.+..|.+.+|.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3333344556677777777777777664 33342 7777777777 6666766777777777777777777
Q ss_pred cccchhhhccccccccccccccCcCCCCccccCCCcccceeeccccc
Q 002606 614 RELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNA 660 (901)
Q Consensus 614 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~ 660 (901)
..+|...+.+.+|+.|++++| .+..+|.. +..+..|++|.+.+|.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc
Confidence 777776667777777777777 56777763 3455567777777764
No 47
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.55 E-value=1.2e-05 Score=93.75 Aligned_cols=202 Identities=14% Similarity=0.066 Sum_probs=116.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC---CeEEEEEeCCc---CCHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF---DFVIWVVVSKD---LQIEKIQESI 226 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~~~---~~~~~~~~~i 226 (901)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4589999999999888876667789999999999999999998765 222222 12345544321 1222221111
Q ss_pred ---------------HHHhCCCc----------------cccccccHHHHHHHHHHHHccCceEEEecccccc--ccccc
Q 002606 227 ---------------GEKIGLLN----------------DTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVK 273 (901)
Q Consensus 227 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~ 273 (901)
+...+... +..... ....+..+.+.++++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111110 000111 123456777888888888887766643 34666
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCCCCCcEEEE--ecCChHH-Hhh-hcCCccEEecCCChHHHHHHHHHHhcCCccC
Q 002606 274 VGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVF--TTRSEEV-CGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLN 349 (901)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iii--TtR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 349 (901)
+...+.... +...|+| ||++... ... ......+.+.+++.+|.++++.+.+......
T Consensus 312 ik~~~~~~~-------------------~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ 372 (615)
T TIGR02903 312 IKKLFEEGA-------------------PADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH 372 (615)
T ss_pred hhhhcccCc-------------------cceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 655554333 4444555 5665432 111 1223467899999999999999977643222
Q ss_pred CChhHHHHHHHHHHHcCCChhHHHHHHHH
Q 002606 350 CHPEILELARTVAKECGGLPLALITIGRA 378 (901)
Q Consensus 350 ~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 378 (901)
.. .+..+.|.+.+..-+-|+..++..
T Consensus 373 ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 373 LA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred CC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 22 234455555554445566555444
No 48
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=2.1e-06 Score=87.63 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=104.3
Q ss_pred HHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHH
Q 002606 165 VWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQ 244 (901)
Q Consensus 165 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 244 (901)
|.+++.++..+-+.+||++|+||||||+.+.... +.+- ..||..|-...-..-.++|.++..
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 4555567888899999999999999999998876 2221 567776655444444455544321
Q ss_pred HHHHHHHHHccCceEEEeccccc--ccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEE--ecCChHH---Hh
Q 002606 245 KALDIFRILKKKKFVLLLDDIWQ--RVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVF--TTRSEEV---CG 317 (901)
Q Consensus 245 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iii--TtR~~~v---~~ 317 (901)
-...+.++|.+|++|.|.. ..+.+- .+|.-. +|..++| ||.+... +.
T Consensus 215 ----~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE-------------------~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 215 ----NEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVE-------------------NGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred ----HHHhhhcceeEEEeHHhhhhhhhhhhc---ccceec-------------------cCceEEEecccCCCccchhHH
Confidence 1124567899999999942 333322 344433 6777777 7777653 34
Q ss_pred hhcCCccEEecCCChHHHHHHHHHHhc---CCcc---C-CChh--H-HHHHHHHHHHcCCChh
Q 002606 318 WMEAHQNFKVACLSHNDAWELFQQKVG---EETL---N-CHPE--I-LELARTVAKECGGLPL 370 (901)
Q Consensus 318 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~---~~~~---~-~~~~--~-~~~~~~i~~~c~GlPL 370 (901)
.+....++.|++|+.++...++.+... .... . .++. + ..+..-++..|+|-.-
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 455678899999999999999888432 1110 1 1111 1 3466777778888754
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.3e-06 Score=92.07 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=114.0
Q ss_pred cccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhc---ccCCCCCeEEEEEe-CCcCCHHHHHHHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFL---QSSTDFDFVIWVVV-SKDLQIEKIQESIGE 228 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~ 228 (901)
+++|-+..++.+.+.+..+.. ....++|+.|+||||+|+.++.... ....|+|...|... +....+++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 578999999999999987654 4668999999999999999988641 12346666666542 23333333 223333
Q ss_pred HhCCCccccccccHHHHHHHHHHHHccCceEEEeccc--ccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEE
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDI--WQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKV 306 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~i 306 (901)
.+.... ..+++=++|+||+ .+...+..+...+.... .++.+
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-------------------~~t~~ 126 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-------------------KGVFI 126 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCC-------------------CCeEE
Confidence 332111 1133445666665 44556777766666544 67888
Q ss_pred EEecCChHH-Hh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 307 VFTTRSEEV-CG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 307 iiTtR~~~v-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
|++|.+.+. .. .......+++.++++++....+.+...... .+.+..++..++|.|..+...
T Consensus 127 il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 127 ILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 888766542 11 123457899999999999888876543211 233678899999998765433
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.1e-08 Score=101.27 Aligned_cols=133 Identities=25% Similarity=0.263 Sum_probs=91.4
Q ss_pred CCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhhcccccccc
Q 002606 550 PRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCL 629 (901)
Q Consensus 550 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 629 (901)
.....|.++++++|.++.+..+ ..-.+.+|+|++|+| .+..+- ++..|++|+.||||+|.++++-..-.+|.|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 4456677888888877766655 556777888888887 444443 4667778888888888777765555667777888
Q ss_pred ccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccc
Q 002606 630 NLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHA 694 (901)
Q Consensus 630 ~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 694 (901)
.|.+| .++.+.. +++|-+|..|++.+|++... .....+++|+.|+.+.+..|....
T Consensus 358 ~La~N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQN-KIETLSG--LRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhh-hHhhhhh--hHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCccc
Confidence 88777 5566553 67777788888887776442 245667777777777777665443
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.6e-08 Score=103.01 Aligned_cols=209 Identities=21% Similarity=0.175 Sum_probs=116.0
Q ss_pred CCCCCccEEEecCCcccccCc-hHHhcCCCCCEEEccCCCcccc---CcccccCCCCCCEEeccCCCCcccchh--hhcc
Q 002606 550 PRCPHLLTLFLNNNVKLRISD-GFLQYMSSLKVLSLSHNEVLFE---LPSDISRLVSLELLDLSNSRIRELPEE--LAAL 623 (901)
Q Consensus 550 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~~L~l~~~~i~~lp~~--i~~l 623 (901)
.++++|+...|.++.+...+. +....|++++.||||.| .+.. +-.....|++|+.|+++.|++....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567888999998887655543 34677899999999988 4433 334556788899999988877643222 2356
Q ss_pred ccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhhhhcccc
Q 002606 624 VNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQ 703 (901)
Q Consensus 624 ~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~ 703 (901)
++|+.|.|+.|.....--......+++|+.|++..|..... ......-++.|+.|+++.++...++...
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-------~~~~~~i~~~L~~LdLs~N~li~~~~~~---- 265 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-------KATSTKILQTLQELDLSNNNLIDFDQGY---- 265 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-------ecchhhhhhHHhhccccCCccccccccc----
Confidence 77888888888322111111234677888888887742111 0111223445566666655443333221
Q ss_pred cccccceeEecccCCCcccccCccCcccCCeeecccCCCceeEEe-cccccccccccccccEEEeecCCC--CCCCchhh
Q 002606 704 LRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKI-DYKGEAQQFCFQSLRVVVIDLCIG--LKDLTFLV 780 (901)
Q Consensus 704 l~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~L~~L~L~~c~~--l~~l~~l~ 780 (901)
..+.++.|..|.++.| ++.++.. +.........|++|+.|++..++- +..+..+.
T Consensus 266 ---------------------~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 266 ---------------------KVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred ---------------------ccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 3344555555555554 2222211 110001122467777777766532 33344455
Q ss_pred ccCCccEEEEec
Q 002606 781 FASNLKSIEVRS 792 (901)
Q Consensus 781 ~l~~L~~L~L~~ 792 (901)
.+++|+.|.+..
T Consensus 324 ~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 324 TLENLKHLRITL 335 (505)
T ss_pred ccchhhhhhccc
Confidence 566666666544
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.6e-06 Score=95.40 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=110.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (901)
.++||.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+...... +.|.-++++..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 3589999999999999987764 4667999999999999999887762100 01111222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HHccCceEEEeccccccc--ccccccccCCCCCCCcccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVK 290 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~ 290 (901)
+.+..++++ +.+ .+.+.. -..++.-++|||++.... .+..+...+....
T Consensus 96 as~rgVDdI-ReL-------------------Ie~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-------- 147 (830)
T PRK07003 96 ASNRGVDEM-AAL-------------------LERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-------- 147 (830)
T ss_pred cccccHHHH-HHH-------------------HHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC--------
Confidence 211111111 111 111110 012345588999996542 3444544443322
Q ss_pred cCCCCCCCCCCCCcEEEEecCChH-HH-hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 291 VGDPLPSPEKSSESKVVFTTRSEE-VC-GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 291 ~~~~~~~~~~~~gs~iiiTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
.+.++|+||++.. +. ...+....|++++++.++..+.+.+.+..+....+ .+..+.|++.++|.
T Consensus 148 -----------~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~Gs 213 (830)
T PRK07003 148 -----------PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGS 213 (830)
T ss_pred -----------CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCC
Confidence 4677777666553 32 22234578999999999999999988765543322 34578899999886
Q ss_pred h-hHHHHHHH
Q 002606 369 P-LALITIGR 377 (901)
Q Consensus 369 P-Lai~~~g~ 377 (901)
. -|+..+-.
T Consensus 214 mRdALsLLdQ 223 (830)
T PRK07003 214 MRDALSLTDQ 223 (830)
T ss_pred HHHHHHHHHH
Confidence 6 45555443
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4e-08 Score=102.70 Aligned_cols=161 Identities=18% Similarity=0.109 Sum_probs=108.7
Q ss_pred cccccEEEEeecCcccccc---cCCCCCCccEEEecCCcccccC--chHHhcCCCCCEEEccCCCccccCc-ccccCCCC
Q 002606 529 EWEKVRRLSLMENQIKVIL---GMPRCPHLLTLFLNNNVKLRIS--DGFLQYMSSLKVLSLSHNEVLFELP-SDISRLVS 602 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp-~~i~~l~~ 602 (901)
+++++|.+++.+..+...+ ....|++++.|+|+.|-+.... ..+...+++|+.|+|+.|....-.. ..-..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888877766554 3578999999999988544332 2345679999999999884321111 12235789
Q ss_pred CCEEeccCCCCc--ccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCC
Q 002606 603 LELLDLSNSRIR--ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLK 680 (901)
Q Consensus 603 L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 680 (901)
|+.|.+++|+++ .+-.....+++|+.|+|..|..+..-... ..-+..|++|++++|++.... .....+.++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~------~~~~~~~l~ 271 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFD------QGYKVGTLP 271 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccc------ccccccccc
Confidence 999999999887 33344567889999999888422211111 345778999999998865432 334567788
Q ss_pred CCcEEEEEeccccchh
Q 002606 681 HLEVLSFTLRSSHALK 696 (901)
Q Consensus 681 ~L~~L~l~~~~~~~~~ 696 (901)
.|+.|.++.+.+.++.
T Consensus 272 ~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIA 287 (505)
T ss_pred chhhhhccccCcchhc
Confidence 8888888766655443
No 54
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=2.2e-06 Score=87.64 Aligned_cols=168 Identities=11% Similarity=0.088 Sum_probs=98.5
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCc
Q 002606 155 VVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLN 234 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 234 (901)
++|-...+..+.....+.....+.|+|..|+|||+|++.+++... .....+.|+++.+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-------
Confidence 344444455444444334445799999999999999999998862 2233556665322 111111
Q ss_pred cccccccHHHHHHHHHHHHccCceEEEecccccc---cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecC
Q 002606 235 DTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR---VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTR 311 (901)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR 311 (901)
...+.+. +.-+||+||+... ..|......+.+.. ...|..||+|++
T Consensus 86 -------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-----------------~~~~~~vI~ts~ 134 (233)
T PRK08727 86 -------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRA-----------------RAAGITLLYTAR 134 (233)
T ss_pred -------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHH-----------------HHcCCeEEEECC
Confidence 0111221 2348999999532 12222111111100 004667999987
Q ss_pred Ch---------HHHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 312 SE---------EVCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 312 ~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
.. ++.+.+.....+++++++.++-.+++++++.......+ ++....|++.++|-.-.+
T Consensus 135 ~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 135 QMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred CChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 53 23344445678999999999999999987754432333 345778888888766554
No 55
>PF13173 AAA_14: AAA domain
Probab=98.46 E-value=3.2e-07 Score=84.39 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL 253 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (901)
.+++.|.|+.|+||||++++++.+. . ....++++...+....... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 4689999999999999999999887 2 3445677765543221100 000 223333444
Q ss_pred ccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHhh------hcCCccEEe
Q 002606 254 KKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCGW------MEAHQNFKV 327 (901)
Q Consensus 254 ~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~------~~~~~~~~l 327 (901)
..++.++++|+|....+|......+-+.. ...+|++|+.+...... .+....+++
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~-------------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l 119 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNG-------------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIEL 119 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhc-------------------cCceEEEEccchHHHhhcccccCCCeEEEEEE
Confidence 44778999999988888877666555443 56899999988766432 122346799
Q ss_pred cCCChHHH
Q 002606 328 ACLSHNDA 335 (901)
Q Consensus 328 ~~L~~~ea 335 (901)
.||+..|.
T Consensus 120 ~Plsf~E~ 127 (128)
T PF13173_consen 120 YPLSFREF 127 (128)
T ss_pred CCCCHHHh
Confidence 99998774
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.44 E-value=4.2e-07 Score=92.80 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc--CCHHHHHHHHH-----HHhCCCccc
Q 002606 165 VWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD--LQIEKIQESIG-----EKIGLLNDT 236 (901)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~-----~~l~~~~~~ 236 (901)
.++.+.. +....++|+|++|+|||||++++++.. . ..+|+.++|+.+.++ .++.++++.+. .+++.+...
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~ 83 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER 83 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH
Confidence 3444433 355789999999999999999999987 3 338999999997777 78999999993 333321100
Q ss_pred cccccHHHHHHHHHHH-HccCceEEEeccccc
Q 002606 237 WKNRRIEQKALDIFRI-LKKKKFVLLLDDIWQ 267 (901)
Q Consensus 237 ~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~ 267 (901)
...-..........+ -.+++.++++|++..
T Consensus 84 -~~~~~~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 84 -HVQVAEMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred -HHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 000111112222222 357999999999943
No 57
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=4.4e-05 Score=81.51 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=96.9
Q ss_pred CCcccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 152 EPTVVGQQSQLEQVWKCLVE---GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
.+.|+||+++...+...|.+ +..+++.|+|++|+|||||++.+.... . + ..++.-.. +..+++..|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~--~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M--PAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c--eEEEECCC--CHHHHHHHHHH
Confidence 46899999999999999864 234699999999999999999998665 1 2 23332222 67999999999
Q ss_pred HhCCCccccccccHHHHHHHHHHHH-----c-cCceEEEeccccccccccccc---ccCCCCCCCcccccccCCCCCCCC
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRIL-----K-KKKFVLLLDDIWQRVDLVKVG---VPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
+||.+.. ....++...+.+.+ . +++.+||+- +.+-..+..+- ..+....
T Consensus 332 ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~dr----------------- 389 (550)
T PTZ00202 332 ALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDR----------------- 389 (550)
T ss_pred HcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccc-----------------
Confidence 9997532 22233333333333 2 566666663 11111111110 0111111
Q ss_pred CCCCcEEEEecCChHHHhhh---cCCccEEecCCChHHHHHHHHHHh
Q 002606 300 KSSESKVVFTTRSEEVCGWM---EAHQNFKVACLSHNDAWELFQQKV 343 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 343 (901)
.-|.|++----+.+.-.. ..-..|-++.++.++|.+.-++..
T Consensus 390 --r~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 390 --RLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred --hhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 346666654444332111 123468899999999998877653
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.2e-08 Score=106.00 Aligned_cols=107 Identities=20% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCccEEEecCCcccc--cCchHHhcCCCCCEEEccCCCccccC--cccccCCCCCCEEeccCC-CCcc--cchhhhcccc
Q 002606 553 PHLLTLFLNNNVKLR--ISDGFLQYMSSLKVLSLSHNEVLFEL--PSDISRLVSLELLDLSNS-RIRE--LPEELAALVN 625 (901)
Q Consensus 553 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~l~~L~~L~l~~~-~i~~--lp~~i~~l~~ 625 (901)
..|+.|.+.++.-.. -...+...++++..|.+.++..++.- -..-..+.+|++|++..| .++. |-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777763211 11234566888888888887544321 112234677888888775 5552 2222445777
Q ss_pred ccccccccccCcCCCC-ccccCCCcccceeecccc
Q 002606 626 LKCLNLEYTFDLAKIP-WNLISNFSRLHVLRMFGN 659 (901)
Q Consensus 626 L~~L~L~~~~~l~~lp-~~~i~~l~~L~~L~l~~n 659 (901)
|++|++++|..+..-. .....++++|+.+...+|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 8888888775444310 011345555555555544
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=9.7e-06 Score=92.60 Aligned_cols=181 Identities=20% Similarity=0.281 Sum_probs=110.0
Q ss_pred CcccchhHHHHHHHHHHhc---C-CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE---G-SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
.+++|.++.++.+.+|+.. + ..+.+.|+|++|+||||+|+.++++. .|+ ++-+.+++..+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 4589999999999999864 2 26789999999999999999999887 233 2334444433222 2222222
Q ss_pred HhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccc------cccccccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVD------LVKVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
...... .....++-+||+|+++.... +..+...+.. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---------------------~ 129 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---------------------A 129 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---------------------C
Confidence 221100 00113677999999965321 2222222211 2
Q ss_pred CcEEEEecCChH-HH--hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002606 303 ESKVVFTTRSEE-VC--GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAM 379 (901)
Q Consensus 303 gs~iiiTtR~~~-v~--~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 379 (901)
+..||+|+.+.. .. ..-.....+++.+++.++....+.+.+.......+ .+....|++.++|-.-.+......+
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345666554321 11 11133567899999999999999887765543333 3467899999999876665443334
Q ss_pred c
Q 002606 380 A 380 (901)
Q Consensus 380 ~ 380 (901)
.
T Consensus 207 a 207 (482)
T PRK04195 207 A 207 (482)
T ss_pred h
Confidence 3
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.9e-06 Score=81.72 Aligned_cols=58 Identities=29% Similarity=0.351 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc
Q 002606 156 VGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD 216 (901)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (901)
+|++..+..+...+.....+.+.|+|.+|+|||++++.+++... ..-..++++...+.
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhh
Confidence 47888999999988876678899999999999999999999872 22234566665443
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.7e-07 Score=72.32 Aligned_cols=60 Identities=37% Similarity=0.516 Sum_probs=36.7
Q ss_pred CCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccC-cccccCCCCCCEEeccCCCC
Q 002606 553 PHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFEL-PSDISRLVSLELLDLSNSRI 613 (901)
Q Consensus 553 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i 613 (901)
|+|++|++.+|.+..+++..|.++++|++|++++|. +..+ |..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666666666666666666666666663 3333 34566666666666666643
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=2.7e-07 Score=103.50 Aligned_cols=157 Identities=28% Similarity=0.358 Sum_probs=122.5
Q ss_pred cccccccEEEEeecCcccccccCCCCC--CccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCC
Q 002606 527 VREWEKVRRLSLMENQIKVILGMPRCP--HLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLE 604 (901)
Q Consensus 527 ~~~~~~lr~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 604 (901)
....+.+..+++.++.+..++...... +|+.|++.+|.+..++.. +..++.|+.|++++| .+..+|...+.+.+|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 334467899999999999988865554 899999999988887533 678999999999999 7888887777899999
Q ss_pred EEeccCCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcE
Q 002606 605 LLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEV 684 (901)
Q Consensus 605 ~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~ 684 (901)
.|++++|.+..+|..+..+..|+.|.+++|. ....+.. +.++.++..|.+.+|.+.. .+..++.+.+++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~ 259 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLED--------LPESIGNLSNLET 259 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceeee--------ccchhccccccce
Confidence 9999999999999888888889999999884 3444443 7888888888877766433 1344556666777
Q ss_pred EEEEeccccch
Q 002606 685 LSFTLRSSHAL 695 (901)
Q Consensus 685 L~l~~~~~~~~ 695 (901)
|+++.+....+
T Consensus 260 L~~s~n~i~~i 270 (394)
T COG4886 260 LDLSNNQISSI 270 (394)
T ss_pred ecccccccccc
Confidence 77765554443
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=6.5e-06 Score=84.33 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=101.1
Q ss_pred cccchh-HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 154 TVVGQQ-SQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 154 ~~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
.++|.. ..+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 445633 3344444444444557899999999999999999998762 2234566665532100
Q ss_pred CccccccccHHHHHHHHHHHHccCceEEEecccccc---ccccccc-ccCCCCCCCcccccccCCCCCCCCCCCC-cEEE
Q 002606 233 LNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR---VDLVKVG-VPLPSPQKSSESKVKVGDPLPSPEKSSE-SKVV 307 (901)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~ii 307 (901)
... .+.+.+.+ --+|++||+... ..|+... ..+.... ..| .++|
T Consensus 87 --------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~------------------e~g~~~li 135 (235)
T PRK08084 87 --------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRIL------------------ESGRTRLL 135 (235)
T ss_pred --------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHH------------------HcCCCeEE
Confidence 000 11122211 238899999542 2333211 1111000 023 4789
Q ss_pred EecCCh---------HHHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 308 FTTRSE---------EVCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 308 iTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
+||+.. ++.+.+....+++++++++++-.+.+++++.......+ ++...-|++.+.|..-++..+-
T Consensus 136 ~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 136 ITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred EeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 998754 34555666789999999999999999887754432333 3467788888877665554433
No 64
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=5.4e-06 Score=90.86 Aligned_cols=194 Identities=10% Similarity=0.077 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-eEEEEEeCCcCCHHHHHHHHH----
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-FVIWVVVSKDLQIEKIQESIG---- 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~---- 227 (901)
..++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+. ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQ--GKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhc--chhhhhcCcc
Confidence 46899999999999999887766788999999999999999988762 12222 2344443321100 000000
Q ss_pred --HHhCCCccccccccHHHHHHHHHHHH------ccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCC
Q 002606 228 --EKIGLLNDTWKNRRIEQKALDIFRIL------KKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPS 297 (901)
Q Consensus 228 --~~l~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (901)
...+... .......+....+.+.. .+.+-+||+||+.... ....+...+....
T Consensus 91 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~--------------- 153 (337)
T PRK12402 91 FAHFLGTDK--RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS--------------- 153 (337)
T ss_pred hhhhhhhhh--hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc---------------
Confidence 0000000 00001111111111111 1344589999995432 1222222221111
Q ss_pred CCCCCCcEEEEecCCh-HHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 298 PEKSSESKVVFTTRSE-EVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 298 ~~~~~gs~iiiTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
..+++|+||... .+.... .....+++.+++.++....+.+.+.......+ .+....+++.++|.+-.+..
T Consensus 154 ----~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 154 ----RTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ----CCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 446777776443 222211 23457899999999999999887654432222 34678888899887665543
No 65
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.4e-07 Score=104.77 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=71.4
Q ss_pred CccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCc-ccchhhhccccccccccc
Q 002606 554 HLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIR-ELPEELAALVNLKCLNLE 632 (901)
Q Consensus 554 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~ 632 (901)
.++.|+|.+|.+....+..+..+++|+.|+|++|.....+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3666777777665544445677777777777777555567777777777777777777776 567777777777777777
Q ss_pred cccCcCCCCccccCC-Ccccceeeccccc
Q 002606 633 YTFDLAKIPWNLISN-FSRLHVLRMFGNA 660 (901)
Q Consensus 633 ~~~~l~~lp~~~i~~-l~~L~~L~l~~n~ 660 (901)
+|...+.+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 77655567765 333 3455566666554
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.7e-06 Score=95.11 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=109.0
Q ss_pred CcccchhHHHHHHHHHHhcCCceE-EEEEcCCCCcHHHHHHHHHhhhcccCCC-------------------CCeEEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGI-IGLYGMGGVGKTTLLTHINNKFLQSSTD-------------------FDFVIWVV 212 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 212 (901)
..+||-+..++.|.+++..++..- +.++|+.|+||||+|+.+++.... ... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998876654 589999999999999999987621 111 11112221
Q ss_pred eCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HHccCceEEEecccccc--cccccccccCCCCCCCccccc
Q 002606 213 VSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKV 289 (901)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~ 289 (901)
.+....+.. .+.| ...+.. -..+++-++|+|++... .....+...+....
T Consensus 95 Aas~~kVDd-IReL-------------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP------- 147 (944)
T PRK14949 95 AASRTKVDD-TREL-------------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP------- 147 (944)
T ss_pred cccccCHHH-HHHH-------------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-------
Confidence 111111111 1111 111111 12456779999999643 34444444443222
Q ss_pred ccCCCCCCCCCCCCcEEEEec-CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC
Q 002606 290 KVGDPLPSPEKSSESKVVFTT-RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG 367 (901)
Q Consensus 290 ~~~~~~~~~~~~~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 367 (901)
...++|++| ....+... ......|++++|+.++..+.+.+.+........ .+....|++.++|
T Consensus 148 ------------~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~G 212 (944)
T PRK14949 148 ------------EHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANG 212 (944)
T ss_pred ------------CCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCC
Confidence 345555544 44444322 234578999999999999999887654332222 3457889999999
Q ss_pred ChhHHHHH
Q 002606 368 LPLALITI 375 (901)
Q Consensus 368 lPLai~~~ 375 (901)
.|--+..+
T Consensus 213 d~R~ALnL 220 (944)
T PRK14949 213 SMRDALSL 220 (944)
T ss_pred CHHHHHHH
Confidence 88644433
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.5e-05 Score=87.42 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=105.7
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+.+... ...... ..+......-..+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999999887654 4678999999999999999988761 110000 000000000011110000
Q ss_pred CCcccc---ccccHHHHHHHHHHHH-----ccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLNDTW---KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
...... .....++ ...+.+.+ .+++-++|+|++.... .++.+...+....
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~------------------- 147 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP------------------- 147 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-------------------
Confidence 000000 0011111 11122221 2345599999996542 3444444443322
Q ss_pred CCcEEEEecCCh-HHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 302 SESKVVFTTRSE-EVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 302 ~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
...++|++|.+. .+... .+....+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.|-.+.
T Consensus 148 ~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 148 QHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 456667666443 33322 233468999999999999988886654332222 2457789999999886443
No 68
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=2.9e-07 Score=72.13 Aligned_cols=57 Identities=39% Similarity=0.606 Sum_probs=29.5
Q ss_pred CCCEEeccCCCCcccch-hhhccccccccccccccCcCCCCccccCCCcccceeecccc
Q 002606 602 SLELLDLSNSRIRELPE-ELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGN 659 (901)
Q Consensus 602 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n 659 (901)
+|++|++++|+++.+|. .+.++++|++|++++| .+..+|++.|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555543 3445555555555544 345555544555555555555554
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.7e-05 Score=88.41 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (901)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+...... +.|.-++.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 3589999999999999988754 5778999999999999999988761100 01111122221
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHH-HHHccCceEEEecccccc--cccccccccCCCCCCCcccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF-RILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVK 290 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (901)
+....++++ +.+ ...+. .-..+++-++|+|+|... .....+...+....
T Consensus 95 As~~~VddI-Rel-------------------i~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-------- 146 (702)
T PRK14960 95 ASRTKVEDT-REL-------------------LDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-------- 146 (702)
T ss_pred cccCCHHHH-HHH-------------------HHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC--------
Confidence 111111111 111 11111 012355668999999643 23334443333222
Q ss_pred cCCCCCCCCCCCCcEEEEecCCh-HHH-hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 291 VGDPLPSPEKSSESKVVFTTRSE-EVC-GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 291 ~~~~~~~~~~~~gs~iiiTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
.+.++|++|.+. .+. ........+++++++.++..+.+.+.+........ .+....|++.++|.
T Consensus 147 -----------~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~Gd 212 (702)
T PRK14960 147 -----------EHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGS 212 (702)
T ss_pred -----------CCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCC
Confidence 456777766553 332 22244578999999999999999887765442222 33568899999998
Q ss_pred hhHHHH
Q 002606 369 PLALIT 374 (901)
Q Consensus 369 PLai~~ 374 (901)
+-.+..
T Consensus 213 LRdALn 218 (702)
T PRK14960 213 LRDALS 218 (702)
T ss_pred HHHHHH
Confidence 854443
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1e-05 Score=91.39 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=108.9
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccC---C--------------------CCCeE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSS---T--------------------DFDFV 208 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~---~--------------------~F~~~ 208 (901)
.++||-+..++.|.+++..++.. .+.++|..|+||||+|+.+.+...... . .|.-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 35899999999999999887654 568899999999999999988762100 0 01111
Q ss_pred EEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH----HHccCceEEEecccccc--cccccccccCCCCC
Q 002606 209 IWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR----ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQ 282 (901)
Q Consensus 209 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~ 282 (901)
+++..+.. ...++..+.+.. -..++.-++|+|++... ..+..+...+....
T Consensus 96 iEIdAas~-----------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 96 IEMDAASN-----------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred eEeccccc-----------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 12211111 112222111111 11345669999999653 33444444443322
Q ss_pred CCcccccccCCCCCCCCCCCCcEE-EEecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHH
Q 002606 283 KSSESKVKVGDPLPSPEKSSESKV-VFTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELART 360 (901)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~gs~i-iiTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~ 360 (901)
.+.++ ++||....+... .+....+.++.++.++..+.+.+.+.......+ .+..+.
T Consensus 153 -------------------~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~ 210 (700)
T PRK12323 153 -------------------EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRL 210 (700)
T ss_pred -------------------CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHH
Confidence 34454 455555555432 234578999999999999999887754432222 234678
Q ss_pred HHHHcCCChhHHHHH
Q 002606 361 VAKECGGLPLALITI 375 (901)
Q Consensus 361 i~~~c~GlPLai~~~ 375 (901)
|++.++|.|.....+
T Consensus 211 IA~~A~Gs~RdALsL 225 (700)
T PRK12323 211 LAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHcCCCHHHHHHH
Confidence 899999999755443
No 71
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=1.2e-06 Score=81.18 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccc--CCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQS--STDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+..++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35689999999999999999999876210 00134677999888889999999999999876532 345677778888
Q ss_pred HHHccCce-EEEecccccc
Q 002606 251 RILKKKKF-VLLLDDIWQR 268 (901)
Q Consensus 251 ~~l~~kr~-LlVlDdv~~~ 268 (901)
+.+...+. +||+||+..-
T Consensus 81 ~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHCTEEEEEEETTHHH
T ss_pred HHHHhcCCeEEEEeChHhc
Confidence 88877655 9999999553
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.2e-05 Score=81.12 Aligned_cols=200 Identities=16% Similarity=0.225 Sum_probs=126.0
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
..+.+|+++++++...|.. +...-+.|+|..|+|||+.++.+.+.........+ +++|.+-...+...++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3488999999999988764 33444999999999999999999998833323333 788999999999999999999
Q ss_pred HhCCCccccccccHHHHHHHHHHHHc--cCceEEEeccccccccc--ccccccCCCCCCCcccccccCCCCCCCCCCCCc
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRILK--KKKFVLLLDDIWQRVDL--VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSES 304 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 304 (901)
+++.... ......+....+.+.+. ++.+++|||+++.-..- +-+-..+.... ..++
T Consensus 96 ~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~------------------~~~~ 155 (366)
T COG1474 96 KLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG------------------ENKV 155 (366)
T ss_pred HcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc------------------ccce
Confidence 9962221 34555666667777664 58899999999653211 11111111111 0234
Q ss_pred EE--EEecCChHH--------HhhhcCCccEEecCCChHHHHHHHHHHhcCC--ccCCChhHHHHHHHHHHHcCC-ChhH
Q 002606 305 KV--VFTTRSEEV--------CGWMEAHQNFKVACLSHNDAWELFQQKVGEE--TLNCHPEILELARTVAKECGG-LPLA 371 (901)
Q Consensus 305 ~i--iiTtR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~G-lPLa 371 (901)
+| |..+-+... ...++. ..+..++-+.+|-.+.+..++... +....++.-+++..++..-+| .=.|
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 33 334444433 222222 337889999999999998886422 113334444444444444444 3334
Q ss_pred HHH
Q 002606 372 LIT 374 (901)
Q Consensus 372 i~~ 374 (901)
|..
T Consensus 235 idi 237 (366)
T COG1474 235 IDI 237 (366)
T ss_pred HHH
Confidence 433
No 73
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=9.2e-06 Score=82.33 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=88.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..+.+.|+|+.|+|||+|++.++... . ..+++.. .+...++. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 34679999999999999999887664 1 1233221 11111111 1
Q ss_pred HccCceEEEecccccc----cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCC---------hHHHhhh
Q 002606 253 LKKKKFVLLLDDIWQR----VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRS---------EEVCGWM 319 (901)
Q Consensus 253 l~~kr~LlVlDdv~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~---------~~v~~~~ 319 (901)
+.+ -+|++||+... ..+-.+...+.. .|..+|+|++. +++.+.+
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~---------------------~g~~ilits~~~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQ---------------------AGTSLLMTSRLWPSSWNVKLPDLKSRL 142 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHh---------------------CCCeEEEECCCChHHhccccccHHHHH
Confidence 111 27888999432 111111111111 46789998873 3345556
Q ss_pred cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 320 EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 320 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
.....+++++++.++-.+++++++.......+ +++..-|++.+.|..-++..+-
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 66789999999999999999998865443333 3567888888888877665433
No 74
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=5.4e-06 Score=97.44 Aligned_cols=165 Identities=19% Similarity=0.257 Sum_probs=96.4
Q ss_pred cccchhHHHH---HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 002606 154 TVVGQQSQLE---QVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 154 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 230 (901)
+|+|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .+..+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~---------- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK---------- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH----------
Confidence 5789888774 56666777777788999999999999999999876 34441 111110 0000
Q ss_pred CCCccccccccHHHHHHHHHHHH--ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEE
Q 002606 231 GLLNDTWKNRRIEQKALDIFRIL--KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKV 306 (901)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~i 306 (901)
+..+......+.+ .+++.+||+||++.- ...+.+...+. .|+.+
T Consensus 92 ----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----------------------~g~Ii 139 (725)
T PRK13341 92 ----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----------------------NGTIT 139 (725)
T ss_pred ----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----------------------CceEE
Confidence 0111111222222 246779999999642 33333332221 45555
Q ss_pred EE--ecCChH--HHh-hhcCCccEEecCCChHHHHHHHHHHhcC-------CccCCChhHHHHHHHHHHHcCCChh
Q 002606 307 VF--TTRSEE--VCG-WMEAHQNFKVACLSHNDAWELFQQKVGE-------ETLNCHPEILELARTVAKECGGLPL 370 (901)
Q Consensus 307 ii--TtR~~~--v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-------~~~~~~~~~~~~~~~i~~~c~GlPL 370 (901)
+| ||.+.. +.. .......+.+++|+.++...++.+.+.. .....+ .+....|++.+.|..-
T Consensus 140 LI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 140 LIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred EEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 55 344432 211 1223467999999999999999887641 111122 3456778888877643
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=1.5e-06 Score=86.16 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHHHHh---cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLV---EGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.||||+++++++...+. .+..+.+.|+|.+|+|||+|++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999993 2457899999999999999999999888
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.1e-05 Score=89.08 Aligned_cols=191 Identities=19% Similarity=0.156 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|-+..++.|..++..+... .+.++|+.|+||||+|+.+++.. ...+.+...+|.|.+... +.......+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 35799999999999998887654 56999999999999999998877 211222223333321100 0000000000000
Q ss_pred CCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCc
Q 002606 232 LLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSES 304 (901)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 304 (901)
.. .....++ +..+.+.+ .+++-++|+|+++.. ..+..+...+.... ..+
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-------------------~~t 147 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-------------------EHV 147 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-------------------CCE
Confidence 00 0111111 11122222 245669999999643 33444444443322 344
Q ss_pred EEEEec-CChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 305 KVVFTT-RSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 305 ~iiiTt-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
.+|++| ....+.... .....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 555544 444443222 33568999999999999999988765432222 345788999999988644
No 77
>PLN03025 replication factor C subunit; Provisional
Probab=98.26 E-value=1.4e-05 Score=86.38 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-FVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|.++.++.+.+++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..+.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 35789999899988888777767788999999999999999988862 22232 12222233322222 2222222111
Q ss_pred CCccccccccHHHHHHHHHHHHccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEe
Q 002606 232 LLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFT 309 (901)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiT 309 (901)
.... ..-.++.-++|+|+++... ....+...+.... ..+++|++
T Consensus 90 ~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-------------------~~t~~il~ 135 (319)
T PLN03025 90 QKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-------------------NTTRFALA 135 (319)
T ss_pred hccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-------------------CCceEEEE
Confidence 0000 0001345699999996532 2222222221111 45667766
Q ss_pred cCCh-HHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 310 TRSE-EVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 310 tR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
+... .+.. .......++++++++++..+.+...+.......+ .+....|++.++|-.-.+
T Consensus 136 ~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 136 CNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred eCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5432 2211 1123467899999999999999888765543333 335788899998876443
No 78
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.25 E-value=2.2e-05 Score=85.29 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=104.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe--CCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV--SKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l 230 (901)
.+++|+++.++.+.+++..+..+.+.++|..|+||||+|+.+.+... ...+. ..++.+ +.......+ ...+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHH-HHHHHHH
Confidence 35899999999999999887777789999999999999999998862 12221 122222 222221111 1111111
Q ss_pred CCCccccccccHHHHHHHHHHHHccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEE
Q 002606 231 GLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVF 308 (901)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iii 308 (901)
....+ .-...+-++|+|++..-. ....+...+.... ..+.+|+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------------------~~~~lIl 137 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------------------QNTRFIL 137 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------------------CCCeEEE
Confidence 10000 001234589999985431 2223332222221 3456666
Q ss_pred ecCCh-HHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 309 TTRSE-EVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 309 TtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
++... .+.. .......+++.+++.++....+.+.+.......+ .+....+++.++|.+--+.
T Consensus 138 ~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred EeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 65432 2211 1123456899999999999998887765442222 3457888999999876543
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=4.4e-05 Score=82.97 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCe-E---EEEEeCCcCCHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSS-TDFDF-V---IWVVVSKDLQIEKIQESI 226 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~-~---~wv~~~~~~~~~~~~~~i 226 (901)
..++|.++.++.+.+.+..+... .+.++|+.|+||+|+|..+.+...-.. ..... . .-..+... ...-+.|
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~---c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD---HPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC---ChHHHHH
Confidence 46899999999999999887655 588999999999999998887662111 00000 0 00000000 0111111
Q ss_pred HHHhCCC-------ccc-----cccccHHHHHHHHHHHHc-----cCceEEEecccccc--cccccccccCCCCCCCccc
Q 002606 227 GEKIGLL-------NDT-----WKNRRIEQKALDIFRILK-----KKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSES 287 (901)
Q Consensus 227 ~~~l~~~-------~~~-----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ 287 (901)
...-... .+. ......++ +..+.+++. +.+-++|+||+... .....+...+....
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp----- 169 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP----- 169 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-----
Confidence 1100000 000 01112233 233344432 45668999999543 23333333333221
Q ss_pred ccccCCCCCCCCCCCCcEEEEecCCh-HHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHc
Q 002606 288 KVKVGDPLPSPEKSSESKVVFTTRSE-EVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKEC 365 (901)
Q Consensus 288 ~~~~~~~~~~~~~~~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 365 (901)
.++.+|++|.+. .+... ......+.+.+++.++..+++.+...... . +....+++.+
T Consensus 170 --------------~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~----~---~~~~~l~~~s 228 (365)
T PRK07471 170 --------------ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP----D---DPRAALAALA 228 (365)
T ss_pred --------------CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC----H---HHHHHHHHHc
Confidence 456666666554 33322 23457899999999999999987653221 1 1226789999
Q ss_pred CCChhHHHHHH
Q 002606 366 GGLPLALITIG 376 (901)
Q Consensus 366 ~GlPLai~~~g 376 (901)
+|.|..+..+.
T Consensus 229 ~Gsp~~Al~ll 239 (365)
T PRK07471 229 EGSVGRALRLA 239 (365)
T ss_pred CCCHHHHHHHh
Confidence 99998665543
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.22 E-value=1.7e-06 Score=91.78 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=66.3
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhCCCccccccc
Q 002606 164 QVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL--QIEKIQESIGEKIGLLNDTWKNR 240 (901)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 240 (901)
++++.+.. +.-...+|+|++|+||||||+++|+.. . ..+|+.++||.+.+.. .+.++++.|...+-.. ..+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCC
Confidence 45555544 455688999999999999999999998 3 3389999999999887 7778888776322111 11111
Q ss_pred cHHH------HHHHHHHH-HccCceEEEecccc
Q 002606 241 RIEQ------KALDIFRI-LKKKKFVLLLDDIW 266 (901)
Q Consensus 241 ~~~~------~~~~l~~~-l~~kr~LlVlDdv~ 266 (901)
...+ ..+....+ -.+++++|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 1111 11111111 36799999999994
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=2.6e-05 Score=79.76 Aligned_cols=151 Identities=16% Similarity=0.228 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
..+.|+|..|+|||+|++.+++.. . ..-..++|++..+ +... ...+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 578999999999999999998876 2 1224567775432 1110 012233333
Q ss_pred cCceEEEecccccc---ccccc-ccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChH---------HHhhhcC
Q 002606 255 KKKFVLLLDDIWQR---VDLVK-VGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEE---------VCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~ 321 (901)
+-. +||+||+... ..|+. +...+.... ..|..+|+|++... +.+.+..
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~------------------~~g~~ilits~~~p~~l~~~~~~L~SRl~~ 157 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLR------------------DSGRRLLLAASKSPRELPIKLPDLKSRLTL 157 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHH------------------hcCCEEEEeCCCCHHHcCccCccHHHHHhc
Confidence 322 6889999532 23332 222111100 04678899887543 2334445
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
..++++++++.++-.+.+++++.......+ ++...-|++.+.|..-++..+-
T Consensus 158 gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 158 ALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 578899999999999999976654332222 3567778888777765554433
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.8e-05 Score=87.10 Aligned_cols=183 Identities=19% Similarity=0.162 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (901)
.+++|-+..++.+...+..+.. ..+.++|+.|+||||+|+.+++...... +.|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3579999999999999987654 4578999999999999999987652100 01222222322
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HHccCceEEEecccccc--cccccccccCCCCCCCcccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVK 290 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (901)
.....+++ ..++...+.. -..+++-++|+||+... ...+.+...+....
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-------- 147 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-------- 147 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC--------
Confidence 11111111 1111111111 12356669999999643 33444444443322
Q ss_pred cCCCCCCCCCCCCcEEE-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 291 VGDPLPSPEKSSESKVV-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 291 ~~~~~~~~~~~~gs~ii-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
..+.+| +||....+... ......+++++++.++..+.+.+.+.......+ .+....|++.++|.
T Consensus 148 -----------~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 148 -----------EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGS 213 (546)
T ss_pred -----------CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCC
Confidence 345555 55554444422 344678999999999998888876654332222 33567889999997
Q ss_pred hh-HHHHHHH
Q 002606 369 PL-ALITIGR 377 (901)
Q Consensus 369 PL-ai~~~g~ 377 (901)
+- |+..+-.
T Consensus 214 lR~alnlLek 223 (546)
T PRK14957 214 LRDALSLLDQ 223 (546)
T ss_pred HHHHHHHHHH
Confidence 64 4444433
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.9e-05 Score=86.16 Aligned_cols=186 Identities=23% Similarity=0.229 Sum_probs=105.8
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCC-C-----------------CCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSST-D-----------------FDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------F~~~~wv~~ 213 (901)
.++||.+...+.+...+..+.. +.+.++|+.|+||||+|+.+.+....... . +..+..+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4689999888888888887765 46789999999999999999887621000 0 001222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
+.......+ +.|.+.... .-..+++-++|+|++..- .....+...+....
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~--------- 145 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP--------- 145 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC---------
Confidence 211111111 111111100 012345669999999542 23333433333221
Q ss_pred CCCCCCCCCCCCcEEEE-ecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC-C
Q 002606 292 GDPLPSPEKSSESKVVF-TTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG-L 368 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iii-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-l 368 (901)
....+|+ ||....+.... .....+++.+++.++....+.+.+.......+ .+....|++.++| .
T Consensus 146 ----------~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 146 ----------SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGL 212 (472)
T ss_pred ----------CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCH
Confidence 2344444 44334443322 34568899999999999999887754332222 3356778887754 4
Q ss_pred hhHHHHHHHHh
Q 002606 369 PLALITIGRAM 379 (901)
Q Consensus 369 PLai~~~g~~l 379 (901)
+.|+..+-.+.
T Consensus 213 R~aln~Le~l~ 223 (472)
T PRK14962 213 RDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.2e-05 Score=84.44 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.++||-+..+..|..++..+... .+.++|+.|+||||+|+.+++... ....... ..+........+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~--~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN--EPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc--cccCCCcHHHHHHccCCccce
Confidence 35799999999999999887654 589999999999999999988762 1111000 000000011111110000000
Q ss_pred -CCc-cccccccHHHHHHHHHH-HHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEE
Q 002606 232 -LLN-DTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKV 306 (901)
Q Consensus 232 -~~~-~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~i 306 (901)
... ......+..++...+.. -..++.-++|+|++..- ..+..+...+.... ....+
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-------------------~~viF 154 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-------------------AHIVF 154 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-------------------CceEE
Confidence 000 00000111122222221 12345669999999643 34555544443221 33444
Q ss_pred E-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 307 V-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 307 i-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
| .||....+... ......|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 155 ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred EeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 4 45554555332 234567999999999999998887654432222 345788999999988543
No 85
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.17 E-value=3.3e-05 Score=77.99 Aligned_cols=181 Identities=18% Similarity=0.186 Sum_probs=99.8
Q ss_pred Ccccchh-HHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 153 PTVVGQQ-SQLEQVWKCLVEG---SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 153 ~~~vGr~-~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
..++|.. +..-...+.+.++ ....+.|+|..|+|||.|.+.+++...+.... ..+++++ ..++...+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeec------HHHHHHHHHH
Confidence 3446753 2233333434332 23468999999999999999999987322222 2466663 4455555555
Q ss_pred HhCCCccccccccHHHHHHHHHHHHccCceEEEeccccccc---cccc-ccccCCCCCCCcccccccCCCCCCCCCCCCc
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV---DLVK-VGVPLPSPQKSSESKVKVGDPLPSPEKSSES 304 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 304 (901)
.+.. ... ..+.+.+++ -=+|++||+..-. .|.. +...+.... ..|.
T Consensus 82 ~~~~-------~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~------------------~~~k 131 (219)
T PF00308_consen 82 ALRD-------GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI------------------ESGK 131 (219)
T ss_dssp HHHT-------TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH------------------HTTS
T ss_pred HHHc-------ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH------------------hhCC
Confidence 5421 111 234444543 3388999996431 1221 111111000 0567
Q ss_pred EEEEecCCh---------HHHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 305 KVVFTTRSE---------EVCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 305 ~iiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
+||+|++.. ++.+.+...-.+++++++.++-.+++.+++.......+ ++++.-|++.+.+..-.+.
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 899998544 24555667778999999999999999998876553333 3456667776665544443
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=6.3e-05 Score=84.86 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=108.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCe-EEEEEeCCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDF-VIWVVVSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l 230 (901)
.+++|-+..++.+...+..+.. ..+.++|+.|+||||+|+.+++... ....... -.+..+. .......|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~----~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCE----QCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCC----CChHHHHHhcCC
Confidence 3579999999999888877654 5788999999999999999988762 1111000 0000000 000000110000
Q ss_pred CCCc---cccccccHHHHHHHHHH----HHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 231 GLLN---DTWKNRRIEQKALDIFR----ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 231 ~~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
.... +.......++....+.. -..+++-++|+|+++.- ..+..+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp------------------- 156 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP------------------- 156 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-------------------
Confidence 0000 00001111111111111 12356678999999753 34555544443322
Q ss_pred CCcEEE-EecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 302 SESKVV-FTTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 302 ~gs~ii-iTtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
..+.+| +||+...+.... .....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 445555 455655554433 34567999999999999999988865542222 234677889999987544
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=6.3e-05 Score=82.47 Aligned_cols=172 Identities=14% Similarity=0.119 Sum_probs=101.9
Q ss_pred CcccchhHHHHHHHHHHhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhhcccC------------------CC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGS----------AGIIGLYGMGGVGKTTLLTHINNKFLQSS------------------TD 204 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~ 204 (901)
..++|-+..++.+.+.+..+. ..-+.++|+.|+|||++|+.+.....-.. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 357999999999999998753 45688999999999999999887651100 01
Q ss_pred CCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--ccccccccc
Q 002606 205 FDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVP 277 (901)
Q Consensus 205 F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~ 277 (901)
.| +.++.... .....++.. .+.+.. .+++-++|+|++... .....+...
T Consensus 85 pD-~~~i~~~~----------------------~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 85 PD-VRVVAPEG----------------------LSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CC-EEEecccc----------------------ccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 11 11221110 001111211 122222 244558888999643 222333333
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCcEEEEecCC-hHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHH
Q 002606 278 LPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRS-EEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEIL 355 (901)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 355 (901)
+.... .+..+|++|.+ ..+... ......+.+.+++.++..+.+.+..+. + .
T Consensus 141 LEep~-------------------~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~ 193 (394)
T PRK07940 141 VEEPP-------------------PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---P 193 (394)
T ss_pred hhcCC-------------------CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---H
Confidence 32222 45555555544 444433 234578999999999999988754321 1 2
Q ss_pred HHHHHHHHHcCCChhHHHHH
Q 002606 356 ELARTVAKECGGLPLALITI 375 (901)
Q Consensus 356 ~~~~~i~~~c~GlPLai~~~ 375 (901)
+.+..++..++|.|.....+
T Consensus 194 ~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 194 ETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 34788999999999765444
No 88
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=5.3e-06 Score=97.63 Aligned_cols=110 Identities=25% Similarity=0.335 Sum_probs=91.0
Q ss_pred ccEEEEeecCcccc-cc-cCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEecc
Q 002606 532 KVRRLSLMENQIKV-IL-GMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLS 609 (901)
Q Consensus 532 ~lr~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~ 609 (901)
.++.|++++|.+.. +| .+..+++|+.|+|++|.+....+..+..+++|++|+|++|.....+|..+++|.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988754 33 36789999999999999875555558999999999999997777899999999999999999
Q ss_pred CCCCc-ccchhhhcc-ccccccccccccCcCCCC
Q 002606 610 NSRIR-ELPEELAAL-VNLKCLNLEYTFDLAKIP 641 (901)
Q Consensus 610 ~~~i~-~lp~~i~~l-~~L~~L~L~~~~~l~~lp 641 (901)
+|.++ .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99988 889988764 467788888885544444
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.14 E-value=2e-05 Score=86.85 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=98.5
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCH
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQI 219 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (901)
.++.|+++.++++.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3579999999999887642 124568999999999999999999887 3333 22211
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHH-ccCceEEEecccccccccccccccCCCCCCC-cccccccCCCCCC
Q 002606 220 EKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-KKKKFVLLLDDIWQRVDLVKVGVPLPSPQKS-SESKVKVGDPLPS 297 (901)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (901)
..+.... .+ . .......+.+.. ...+.+|++||++.-..-. .. ........ .............
T Consensus 190 ~~l~~~~---~g--------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~-~~-~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 SELVRKY---IG--------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKR-TD-SGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred HHHHHHh---hh--------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhcccc-cc-CCCCccHHHHHHHHHHHHHhhC
Confidence 1111110 10 0 111122222222 3467899999996421000 00 00000000 0000000000000
Q ss_pred CCCCCCcEEEEecCChHH-----HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 298 PEKSSESKVVFTTRSEEV-----CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 298 ~~~~~gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
.....+.+||.||...+. .........+++...+.++..++|+.++........-+ ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 011146778888875432 22112345789999999999999998876543222222 356777777764
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=7.5e-05 Score=82.48 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=107.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccc-C------------------CCCCeEEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQS-S------------------TDFDFVIWVV 212 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 212 (901)
..++|.++.++.+.+++..+.. ..+.++|+.|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999987654 467899999999999999988775210 0 12222 2332
Q ss_pred eCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCcccccc
Q 002606 213 VSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVK 290 (901)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (901)
.+...... ..+.+...+... -..+++-++|+|++... .....+...+....
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-------- 145 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-------- 145 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCc--------
Confidence 22111111 112222221100 01234458899998543 23334433333222
Q ss_pred cCCCCCCCCCCCCcEEEEecCChH-HHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 291 VGDPLPSPEKSSESKVVFTTRSEE-VCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 291 ~~~~~~~~~~~~gs~iiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
..+.+|++|.+.. +... ......+++.++++++..+.+...+.......+ .+.+..+++.++|.
T Consensus 146 -----------~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~ 211 (355)
T TIGR02397 146 -----------EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGS 211 (355)
T ss_pred -----------cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCC
Confidence 4566666665443 3222 233467899999999999999887654432222 34678889999999
Q ss_pred hhHHHHHH
Q 002606 369 PLALITIG 376 (901)
Q Consensus 369 PLai~~~g 376 (901)
|..+....
T Consensus 212 ~~~a~~~l 219 (355)
T TIGR02397 212 LRDALSLL 219 (355)
T ss_pred hHHHHHHH
Confidence 87664443
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=1.4e-07 Score=98.21 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=60.6
Q ss_pred ccEEEEeecCccccccc----CCCCCCccEEEecCCc-ccccC-chHHhcCCCCCEEEccCCCccccC--cccccCCCCC
Q 002606 532 KVRRLSLMENQIKVILG----MPRCPHLLTLFLNNNV-KLRIS-DGFLQYMSSLKVLSLSHNEVLFEL--PSDISRLVSL 603 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~~~~~~l--p~~i~~l~~L 603 (901)
.++.|++.+..-....+ ..+|+++..|.+.+|. ++... ..+-..+++|++|+|..|..++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56677777654322222 2567888888777773 22111 122346788888888886555432 1234567888
Q ss_pred CEEeccCC-CCcc--cchhhhccccccccccccc
Q 002606 604 ELLDLSNS-RIRE--LPEELAALVNLKCLNLEYT 634 (901)
Q Consensus 604 ~~L~l~~~-~i~~--lp~~i~~l~~L~~L~L~~~ 634 (901)
+||++++| .|+. +-.-...+++|+.+.+.||
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 88888887 3442 3223445666777777776
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=3.2e-05 Score=88.61 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCC-------------------CCeEEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTD-------------------FDFVIWVV 212 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 212 (901)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+... .... |.-++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 3689999999999999988764 4679999999999999999887651 1100 11111222
Q ss_pred eCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH-HHccCceEEEeccccccc--ccccccccCCCCCCCccccc
Q 002606 213 VSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKV 289 (901)
Q Consensus 213 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (901)
.+....++. ..++...... -..+++-++|+|++.... ....+...+....
T Consensus 95 aAs~~gVd~--------------------IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp------- 147 (709)
T PRK08691 95 AASNTGIDN--------------------IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP------- 147 (709)
T ss_pred ccccCCHHH--------------------HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-------
Confidence 111111111 1111111100 012456689999995432 2223333332211
Q ss_pred ccCCCCCCCCCCCCcEEEEecCCh-HHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC
Q 002606 290 KVGDPLPSPEKSSESKVVFTTRSE-EVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG 367 (901)
Q Consensus 290 ~~~~~~~~~~~~~gs~iiiTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 367 (901)
..+++|++|.+. .+.. ..+....|++.+++.++..+.+.+.+.......+ .+....|++.++|
T Consensus 148 ------------~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~G 212 (709)
T PRK08691 148 ------------EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAG 212 (709)
T ss_pred ------------CCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCC
Confidence 345666655443 3321 1233467899999999999999888765542222 3457899999999
Q ss_pred ChhHHHH
Q 002606 368 LPLALIT 374 (901)
Q Consensus 368 lPLai~~ 374 (901)
.+.-+..
T Consensus 213 slRdAln 219 (709)
T PRK08691 213 SMRDALS 219 (709)
T ss_pred CHHHHHH
Confidence 9854443
No 93
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.7e-05 Score=85.72 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
..++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+... -.. |... .........+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 4579999999999999977654 4688999999999999999988762 111 1100 00011111111111000
Q ss_pred CCcccc---ccccHHH---HHHHHHH-HHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 232 LLNDTW---KNRRIEQ---KALDIFR-ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 232 ~~~~~~---~~~~~~~---~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
...-.. .....++ +...+.. -..+++-++|+|++... ..+..+...+.... .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-------------------~ 148 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-------------------K 148 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-------------------C
Confidence 000000 0011111 1111111 01123447999999642 33444444333221 3
Q ss_pred CcEEEE-ecCChHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChh-HHHHHHH
Q 002606 303 ESKVVF-TTRSEEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPL-ALITIGR 377 (901)
Q Consensus 303 gs~iii-TtR~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~g~ 377 (901)
.+.+|+ |+....+.. .......+++.+++.++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 149 ~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 149 HVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred cEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 445554 444444432 2334578999999999999998887654432222 2357788999999664 4444443
No 94
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.6e-05 Score=88.64 Aligned_cols=193 Identities=16% Similarity=0.133 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.++||-+..++.+.+.+..+... .+.++|..|+||||+|+.+.+.... ...+. +.........+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 46899999999999999887654 4689999999999999999877621 10000 000011111111111000
Q ss_pred -----CCcc-ccccccHHHHHHHHHH-HHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 232 -----LLND-TWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 232 -----~~~~-~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
+... .....+..++...+.. -..+++-++|+|++... .....+...+.... .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-------------------~ 148 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-------------------E 148 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-------------------C
Confidence 0000 0000111111111111 12456679999999643 33444443333222 3
Q ss_pred CcEEEE-ecCChHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 303 ESKVVF-TTRSEEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 303 gs~iii-TtR~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
..++|+ ||....+.. .......|++++++.++..+.+.+.+.......+ .+....|++.++|.+-.+..+
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 455555 454444432 2334578999999999999999887643322222 335678999999988654443
No 95
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.10 E-value=2.8e-05 Score=76.18 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=92.7
Q ss_pred CcccchhHHHHHHHHHHh-----cCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLV-----EGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
.+|||.+..++.+.-++. .+...-+.+||++|+||||||..+.++. ...|. +++.+.-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 468999988887655443 2356788999999999999999999988 44442 2322110011111 1111
Q ss_pred HHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCC-----CCC
Q 002606 228 EKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPS-----PEK 300 (901)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 300 (901)
. .+ +++-+|++|++..- ..-+.+.....++. .-+.+|.- +. ..-
T Consensus 97 ~-----------------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~----idiiiG~g-~~ar~~~~~l 147 (233)
T PF05496_consen 97 T-----------------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGK----IDIIIGKG-PNARSIRINL 147 (233)
T ss_dssp H-----------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSE----EEEEBSSS-SS-BEEEEE-
T ss_pred H-----------------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCe----EEEEeccc-cccceeeccC
Confidence 1 12 23447777888431 11111111111000 00000000 00 000
Q ss_pred CCCcEEEEecCChHHHhhhcC-C-ccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHH
Q 002606 301 SSESKVVFTTRSEEVCGWMEA-H-QNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRA 378 (901)
Q Consensus 301 ~~gs~iiiTtR~~~v~~~~~~-~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~ 378 (901)
.+-+-|=-|||...+...+.. . -..+++..+.+|-.+...+.+..-....+ ++.+.+|++.|.|-|--+.-+-+.
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHH
Confidence 022344468887665444333 2 23489999999999999988765442222 457899999999999765544443
Q ss_pred h
Q 002606 379 M 379 (901)
Q Consensus 379 l 379 (901)
.
T Consensus 225 v 225 (233)
T PF05496_consen 225 V 225 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=0.0001 Score=73.01 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC-------------------CCCCeEEEEEeC-CcCCHHHH
Q 002606 164 QVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS-------------------TDFDFVIWVVVS-KDLQIEKI 222 (901)
Q Consensus 164 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~~-~~~~~~~~ 222 (901)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+.+. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45566666655 5789999999999999999887762110 11121 222211 11111 11
Q ss_pred HHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCC
Q 002606 223 QESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEK 300 (901)
Q Consensus 223 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (901)
.+++.+.+... -..+.+-++|+||+... ...+.+...+....
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~------------------ 124 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPP------------------ 124 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCC------------------
Confidence 11222221110 01245568999998543 23444444443322
Q ss_pred CCCcEEEEecCCh-HHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhH
Q 002606 301 SSESKVVFTTRSE-EVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLA 371 (901)
Q Consensus 301 ~~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 371 (901)
..+.+|++|++. .+... -.....+++.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 125 -~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 125 -PNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 456666666543 33222 223468999999999999988876 2 1 1 34588999999998853
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.07 E-value=4.9e-05 Score=77.87 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=94.9
Q ss_pred cchhHHH-HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 002606 156 VGQQSQL-EQVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLL 233 (901)
Q Consensus 156 vGr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 233 (901)
.|..+.. ..+.++... .....+.|+|..|+|||+||+.+++... .... ...+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~------~~----~--- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPL------LA----F--- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhH------HH----H---
Confidence 4554443 344444332 3456789999999999999999998762 1222 34455433211 00 0
Q ss_pred ccccccccHHHHHHHHHHHHccCceEEEeccccccccc--ccccccCCCCCCCcccccccCCCCCCCCCCCCc-EEEEec
Q 002606 234 NDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDL--VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSES-KVVFTT 310 (901)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~iiiTt 310 (901)
... ...-+||+||+.....+ ..+...+.... ..+. .+|+|+
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~------------------~~~~~~vl~~~ 129 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVR------------------AHGQGALLVAG 129 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHH------------------HcCCcEEEEeC
Confidence 011 12347899999543211 11212121100 0333 467776
Q ss_pred CChHH--------HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002606 311 RSEEV--------CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAM 379 (901)
Q Consensus 311 R~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 379 (901)
+.... .+.+.....+++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+-..+
T Consensus 130 ~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 130 PAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 64432 113333468899999998877777765433322222 3467788888999998887666655
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6.1e-05 Score=85.63 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=106.4
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (901)
.++||-+..++.+.+++..+... .+.++|+.|+||||+|+.+.+...... +.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 35899999999999999887655 568999999999999999888662100 01111233322
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
+....++++ +.+++.+... -..++.-++|+|+|... .....+...+....
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp--------- 147 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP--------- 147 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccC---------
Confidence 222222221 1222211100 11245568999999653 33344443333222
Q ss_pred CCCCCCCCCCCCcEEEEe-cCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 292 GDPLPSPEKSSESKVVFT-TRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iiiT-tR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
..+++|++ |....+... ......+++++++.++..+.+.+.+........ .+....|++.++|.+
T Consensus 148 ----------~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~Gsl 214 (509)
T PRK14958 148 ----------SHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSV 214 (509)
T ss_pred ----------CCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcH
Confidence 45666654 444344322 234567899999999988887777654432222 234678888999988
Q ss_pred hHHHH
Q 002606 370 LALIT 374 (901)
Q Consensus 370 Lai~~ 374 (901)
--+..
T Consensus 215 R~al~ 219 (509)
T PRK14958 215 RDALS 219 (509)
T ss_pred HHHHH
Confidence 54433
No 99
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-07 Score=94.13 Aligned_cols=58 Identities=34% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCEEeccCCCCc--ccchhhhccccccccccccccCcCCCCccccCCCcccceeeccccc
Q 002606 602 SLELLDLSNSRIR--ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNA 660 (901)
Q Consensus 602 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~ 660 (901)
.||+|||++..|+ ++-.-++.+.+|+.|.+.++..-..+... +.+=.+|+.|+++.|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccc
Confidence 5899999988877 55555777888888888877432333322 5566778888877653
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00011 Score=82.19 Aligned_cols=179 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccc------------------CCCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQS------------------STDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~ 213 (901)
.++||-+..++.+.+.+..+... .+.++|+.|+||||+|+.+.....-. .+.+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999999888877655 78899999999999999987643100 011112333433
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
+....++++ +.|++..... -..+++-++|+|++..- .....+...+....
T Consensus 93 as~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp--------- 144 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA--------- 144 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCC---------
Confidence 332232221 1222211000 01245558999999543 23444444443322
Q ss_pred CCCCCCCCCCCCcEEEEe-cCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 292 GDPLPSPEKSSESKVVFT-TRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iiiT-tR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
..+++|++ |....+... ......+++++++.++..+.+.+.+.......+ .+....|++.++|.+
T Consensus 145 ----------~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 145 ----------PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSM 211 (491)
T ss_pred ----------CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 45566554 444555433 234578999999999999999988765543222 335678999999887
Q ss_pred hHH
Q 002606 370 LAL 372 (901)
Q Consensus 370 Lai 372 (901)
-.+
T Consensus 212 R~a 214 (491)
T PRK14964 212 RNA 214 (491)
T ss_pred HHH
Confidence 544
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.4e-05 Score=85.55 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS-TDFDFVIWVVVSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~l 230 (901)
.++||-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+.+...... ........ ........-+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 3589999999999999988765 4668999999999999999977651100 00000000 0001111111110000
Q ss_pred CCC---ccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCC
Q 002606 231 GLL---NDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEK 300 (901)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (901)
... .+.......++..+ +.+.. .++.-++|+|+|... ..+..+...+....
T Consensus 92 h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP------------------ 152 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP------------------ 152 (618)
T ss_pred CCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC------------------
Confidence 000 00000111111111 11211 234458899999653 33444444443322
Q ss_pred CCCcEEEE-ecCChHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 301 SSESKVVF-TTRSEEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 301 ~~gs~iii-TtR~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
...++|+ ||....+.. .......+++++++.++..+.+.+.+.......+ .+....|++.++|.+--+..+
T Consensus 153 -~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 153 -EYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred -CCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3455555 444444432 2344678999999999999999887765442222 345788889999987555433
No 102
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=6.2e-07 Score=100.75 Aligned_cols=106 Identities=31% Similarity=0.413 Sum_probs=45.9
Q ss_pred CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhhccccccc
Q 002606 549 MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKC 628 (901)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 628 (901)
+..+++|..|++.+|.+..+... +..+++|++|+|++| .+..+. .+..+..|+.|++++|.|..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 34444444444444444443331 233444555555544 333332 3344444555555555444442 2333444555
Q ss_pred cccccccCcCCCCc-cccCCCcccceeeccccc
Q 002606 629 LNLEYTFDLAKIPW-NLISNFSRLHVLRMFGNA 660 (901)
Q Consensus 629 L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~n~ 660 (901)
+++++| .+..++. . ...+.+|+.+.+.+|.
T Consensus 167 l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 555444 2333332 1 1344444444444443
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=4.9e-05 Score=84.48 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=107.9
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE-eCCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV-VSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l 230 (901)
.+++|.+..++.+..++..+..+ .+.++|+.|+||||+|+.+.+... -........|.. .......-..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999887655 488999999999999999988762 111111001110 000001111111111100
Q ss_pred CCCcccc---ccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCC
Q 002606 231 GLLNDTW---KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEK 300 (901)
Q Consensus 231 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (901)
....... .....++.. .+.+.+ .+++-++|+|++... ..+..+...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~------------------ 155 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP------------------ 155 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC------------------
Confidence 0000000 001122222 222333 244558899998643 34555544444332
Q ss_pred CCCcEEEE-ecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 301 SSESKVVF-TTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 301 ~~gs~iii-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
..+.+|+ |++...+.... .....++++++++++..+.+...+.......+ .+.+..+++.++|.+--+.
T Consensus 156 -~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 156 -PHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred -CCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4455555 44544444322 23467899999999999888887644332222 3467899999999875443
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.03 E-value=1.3e-06 Score=98.22 Aligned_cols=129 Identities=28% Similarity=0.420 Sum_probs=100.9
Q ss_pred cccccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCE
Q 002606 527 VREWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLEL 605 (901)
Q Consensus 527 ~~~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 605 (901)
+..+.++..+++.+|.+..+.. +..+++|+.|++++|.+.++.. +..++.|+.|++++| .+..++ .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4456789999999999999888 8889999999999999888876 677888999999999 666665 6667899999
Q ss_pred EeccCCCCcccchh-hhccccccccccccccCcCCCCccccCCCcccceeeccccccc
Q 002606 606 LDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIR 662 (901)
Q Consensus 606 L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~ 662 (901)
+++++|.++.++.. +..+.+|+.+++.+| .+..+.. +..+..+..+++..|.++
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccccce
Confidence 99999999988654 588899999999888 3444332 445555555566655543
No 105
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=2.2e-07 Score=102.68 Aligned_cols=129 Identities=27% Similarity=0.356 Sum_probs=101.4
Q ss_pred cccccEEEEeecCccccccc-CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCccc-ccCCCCCCEE
Q 002606 529 EWEKVRRLSLMENQIKVILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSD-ISRLVSLELL 606 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-i~~l~~L~~L 606 (901)
.|.++...+++.|.+..+.. +.-++.|+.|+|++|.+.+.. ++..+++|++|||++| .+..+|.- ...+ +|+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheee
Confidence 46788888999888766543 456789999999999887765 5889999999999999 67777742 2233 49999
Q ss_pred eccCCCCcccchhhhccccccccccccccCcCCCCccccCCCcccceeeccccccc
Q 002606 607 DLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIR 662 (901)
Q Consensus 607 ~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~ 662 (901)
++++|.+++| .++.+|.+|+.||+++|-..+.-.-..++.|..|+.|++.+|.+.
T Consensus 238 ~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999999 689999999999999984322111112678889999999998863
No 106
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.01 E-value=1.8e-05 Score=84.64 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc--CCHHHHHHHHHHHhCCCcccccccc---H-HHH
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD--LQIEKIQESIGEKIGLLNDTWKNRR---I-EQK 245 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~-~~~ 245 (901)
+.-..++|+|++|+|||||++.+++.. . .++|+..+||.+.+. .++.++++.+...+-.......... . ...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 455789999999999999999999987 3 347999999999866 7899999998543322211000000 0 111
Q ss_pred HHHHHHH-HccCceEEEecccc
Q 002606 246 ALDIFRI-LKKKKFVLLLDDIW 266 (901)
Q Consensus 246 ~~~l~~~-l~~kr~LlVlDdv~ 266 (901)
.+....+ -++++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 1112222 36899999999994
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=7.3e-05 Score=80.80 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=110.7
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCeEEEEEeCCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS-TDFDFVIWVVVSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~l 230 (901)
..++|-++..+.+...+..+.. ..+.|+|+.|+||||+|+.+.+...... ..+... ............+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4689999999999999988764 4689999999999999999988762110 001111 0011111112223332221
Q ss_pred C-------CCccc-----cccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCccccccc
Q 002606 231 G-------LLNDT-----WKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 231 ~-------~~~~~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
. .+... ......++. ..+.+++ .+++-++|+|++... .....+...+....
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp--------- 169 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP--------- 169 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC---------
Confidence 0 00000 011123332 2344444 246669999999643 22333333332211
Q ss_pred CCCCCCCCCCCCcEEEEecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChh
Q 002606 292 GDPLPSPEKSSESKVVFTTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPL 370 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iiiTtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 370 (901)
+...-|++|++...+.... +....+++.+++.++..+++.+...... .+ .+....+++.++|.|.
T Consensus 170 ---------~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~---~~~~~~i~~~s~G~pr 235 (351)
T PRK09112 170 ---------ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD---GEITEALLQRSKGSVR 235 (351)
T ss_pred ---------CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CC---HHHHHHHHHHcCCCHH
Confidence 0233455555544443222 3346899999999999999987432211 11 2346789999999998
Q ss_pred HHHHHH
Q 002606 371 ALITIG 376 (901)
Q Consensus 371 ai~~~g 376 (901)
....+.
T Consensus 236 ~Al~ll 241 (351)
T PRK09112 236 KALLLL 241 (351)
T ss_pred HHHHHH
Confidence 665443
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=79.90 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccc-----CCCCCeE-EEEEeCCcCCHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQS-----STDFDFV-IWVVVSKDLQIEKIQES 225 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~F~~~-~wv~~~~~~~~~~~~~~ 225 (901)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|... +-+......+... ...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 3579999999999999987654 488899999999999999998776210 1112211 1111111111111 112
Q ss_pred HHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCC
Q 002606 226 IGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSE 303 (901)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (901)
+++++... -..+++-++|+|++... ..+..+...+.... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-------------------~~ 138 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-------------------AH 138 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-------------------Cc
Confidence 22211100 01234558999998543 22333333332211 34
Q ss_pred cEEEEec-CChHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 304 SKVVFTT-RSEEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 304 s~iiiTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
+.+|++| ....+.. .......++.+++++++....+...+.......+ .+.+..+++.++|.+-.+
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 4555544 4433322 2234467899999999999998887755432222 346788888898866533
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00027 Score=80.86 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGS-AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+.+.... ...... ..+..-..-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 357999988888888888765 467888999999999999999887621 110000 00011111111111000
Q ss_pred CCcccc---ccccHHHHHHHHHHH-----HccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLNDTW---KNRRIEQKALDIFRI-----LKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
...-.. .....++. ..+.+. ..+++-++|+|++... .....+...+....
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~------------------- 147 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP------------------- 147 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-------------------
Confidence 000000 00111111 112221 2355669999999543 33444444433221
Q ss_pred CCcEEEEec-CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh-hHHHHHHHH
Q 002606 302 SESKVVFTT-RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP-LALITIGRA 378 (901)
Q Consensus 302 ~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~ 378 (901)
....+|++| ....+... ......+++++++.++..+.+.+.+.......+ .+.+..|++.++|.+ .|+..+...
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345555544 43444322 233568899999999999999887654432222 345788899999965 677776655
Q ss_pred h
Q 002606 379 M 379 (901)
Q Consensus 379 l 379 (901)
+
T Consensus 225 l 225 (624)
T PRK14959 225 L 225 (624)
T ss_pred H
Confidence 4
No 110
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=1.4e-06 Score=88.95 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccc
Q 002606 647 NFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSS 692 (901)
Q Consensus 647 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 692 (901)
+-++|+++....|.+... +.......+..++.|+.+.+..+.+
T Consensus 155 ~~~~Lrv~i~~rNrlen~---ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENG---GATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred CCcceEEEEeeccccccc---cHHHHHHHHHhccccceEEEecccc
Confidence 445677777776664332 1223445556666777776665543
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00011 Score=84.03 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 213 (901)
.+++|-+..++.+.+++..+... .+.++|+.|+||||+|+.+.+...-.. +.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 45899999999999999887654 568999999999999999987761100 01111222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEeccccccc--ccccccccCCCCCCCccccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
+....++. .+.+++..... -..+++-++|+|++.... ....+...+....
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp--------- 147 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP--------- 147 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCC---------
Confidence 21111111 11122111000 013456699999996432 2333433333222
Q ss_pred CCCCCCCCCCCCcEEEEec-CChHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 292 GDPLPSPEKSSESKVVFTT-RSEEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iiiTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
..+.+|++| ..+.+.. .......+++++++.++..+.+.+.+.......+ .+....|++.++|.+
T Consensus 148 ----------~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gsl 214 (527)
T PRK14969 148 ----------EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSM 214 (527)
T ss_pred ----------CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 345555544 4333332 1233568899999999999988887654332222 335688899999987
Q ss_pred h-HHHHH
Q 002606 370 L-ALITI 375 (901)
Q Consensus 370 L-ai~~~ 375 (901)
- |+..+
T Consensus 215 r~al~ll 221 (527)
T PRK14969 215 RDALSLL 221 (527)
T ss_pred HHHHHHH
Confidence 5 44444
No 112
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.2e-07 Score=91.15 Aligned_cols=85 Identities=28% Similarity=0.285 Sum_probs=63.7
Q ss_pred CCCCEEEccCCCccc--cCcccccCCCCCCEEeccCCCCc-ccchhhhccccccccccccccCcCCCCcc-ccCCCcccc
Q 002606 577 SSLKVLSLSHNEVLF--ELPSDISRLVSLELLDLSNSRIR-ELPEELAALVNLKCLNLEYTFDLAKIPWN-LISNFSRLH 652 (901)
Q Consensus 577 ~~L~~L~L~~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~i~~l~~L~ 652 (901)
..|++||||+. .++ .+-.-++.+.+|+.|.+.++.+. .+-..|.+-.+|+.|+++.|..++..... .+.+|+.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 46999999988 443 23445677889999999999887 55667888899999999999766544322 356788888
Q ss_pred eeeccccccc
Q 002606 653 VLRMFGNAIR 662 (901)
Q Consensus 653 ~L~l~~n~~~ 662 (901)
.|+++.|...
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 8888876543
No 113
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=1.8e-05 Score=83.57 Aligned_cols=289 Identities=17% Similarity=0.173 Sum_probs=173.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-eEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-FVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
..+.+.++|.|||||||++-.+.. . ...|. .+.++....-.+...+.-.....++.+. .+.+..+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 457899999999999999999987 4 34564 5556666655666666666666677653 233445556778
Q ss_pred HHccCceEEEecccccccc-c-ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHhhhcCCccEEecC
Q 002606 252 ILKKKKFVLLLDDIWQRVD-L-VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCGWMEAHQNFKVAC 329 (901)
Q Consensus 252 ~l~~kr~LlVlDdv~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~~~l~~ 329 (901)
.+.++|.++|+||--+-.+ - .-+...+. +. ..-.|+.|+|..- .......+.+.+
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~-~~-------------------~~~~~~atsre~~---l~~ge~~~~~~~ 140 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLG-AC-------------------PRLAILATSREAI---LVAGEVHRRVPS 140 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHc-cc-------------------hhhhhHHHhHhhh---cccccccccCCc
Confidence 8899999999999633211 0 00111111 11 3456778888652 223456678888
Q ss_pred CChH-HHHHHHHHHhcCCcc--CCChhHHHHHHHHHHHcCCChhHHHHHHHHhccCCChHHHHH-HHHH---Hhcccccc
Q 002606 330 LSHN-DAWELFQQKVGEETL--NCHPEILELARTVAKECGGLPLALITIGRAMACKKRPEEWKY-AIEV---LRTSSSQF 402 (901)
Q Consensus 330 L~~~-ea~~Lf~~~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~w~~-~~~~---l~~~~~~~ 402 (901)
|+.. ++.++|...+..... .....-.....+|.++.+|.|++|..+++..+.- .+.+-.. +.+. +.......
T Consensus 141 L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a 219 (414)
T COG3903 141 LSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLA 219 (414)
T ss_pred cccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccc
Confidence 8865 799998877643210 1112224568899999999999999999888763 2222111 1111 11110000
Q ss_pred CCCCccchhhHhhhccCCCcchhhhhhhhhccCCCCccccHHHHHHHHHhcCCCccccccccchhhhhHHHHHHHhcccc
Q 002606 403 AGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGLLNESVKFGVQKEGYHIVGILVRACLLE 482 (901)
Q Consensus 403 ~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~ 482 (901)
.--+......+.+||.-|.. -.+--|.-++.|...+... ...|.+.|-... .........+..+++.+++.
T Consensus 220 ~~~~qtl~asl~ws~~lLtg-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 220 VLRQQTLRASLDWSYALLTG-WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred hhHHHhccchhhhhhHhhhh-HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchh
Confidence 00023567789999999988 6888888888887765543 334555443211 01122223355667777765
Q ss_pred cc---CCCceeehhHHHHHHHHHh
Q 002606 483 EV---GDDDVKLHDVIRDMALWIA 503 (901)
Q Consensus 483 ~~---~~~~~~mHdlv~d~a~~~~ 503 (901)
-. ....|+.-+-++.|+..+-
T Consensus 291 a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 291 ALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 43 3345555666666665543
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=4e-07 Score=100.78 Aligned_cols=159 Identities=27% Similarity=0.335 Sum_probs=93.7
Q ss_pred ccccccccccccccEEEEeecCcccccccC---------------------------------CCCCCccEEEecCCccc
Q 002606 520 GLTEVQDVREWEKVRRLSLMENQIKVILGM---------------------------------PRCPHLLTLFLNNNVKL 566 (901)
Q Consensus 520 ~~~~~~~~~~~~~lr~l~l~~~~~~~~~~~---------------------------------~~~~~L~~L~l~~~~~~ 566 (901)
+-++.-++..+..+|+|-+.++.+....++ ...-.|.+.++++|.+.
T Consensus 98 ~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 98 DPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 333344566778999999988876432211 11123444444455443
Q ss_pred ccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchh-hhccccccccccccccCcCCCCcccc
Q 002606 567 RISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKIPWNLI 645 (901)
Q Consensus 567 ~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~i 645 (901)
.+... +.-++.|+.|+|++| ...+.- .+..|++|++|||++|.+..+|.- ...+. |+.|++++| .++.+-. +
T Consensus 178 ~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~g--i 250 (1096)
T KOG1859|consen 178 LMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRG--I 250 (1096)
T ss_pred hHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhh--H
Confidence 33332 455677777777777 444443 667777777777777777766642 22333 777777777 4555543 6
Q ss_pred CCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEecc
Q 002606 646 SNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRS 691 (901)
Q Consensus 646 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 691 (901)
.+|.+|+.|++++|-+.+.. .+.-|..|..|+.|.+.+|.
T Consensus 251 e~LksL~~LDlsyNll~~hs------eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHS------ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcch------hhhHHHHHHHHHHHhhcCCc
Confidence 77777777777777654432 33444555556666665554
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00016 Score=83.45 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=108.4
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCC--eEEEEEeCCcCCHHHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFD--FVIWVVVSKDLQIEKIQESIGEK 229 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~ 229 (901)
.+++|.+..++.+.+.+..++.. -+.++|+.|+||||+|+.+.+.... ..... ...+- ......--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 45899999999999999887644 6889999999999999999887621 11000 00000 00000111111111
Q ss_pred hCCCccc---cccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCC
Q 002606 230 IGLLNDT---WKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 230 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
.....-. ......++.. .+.+.+ .+++-++|+|++... .....+...+....
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp----------------- 160 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP----------------- 160 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-----------------
Confidence 1000000 0011122211 122222 234558999998543 23444444443222
Q ss_pred CCCCcEEEE-ecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 300 KSSESKVVF-TTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 300 ~~~gs~iii-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
.++++|+ ||....+...+ .....+++.+++.++....+.+.+........ .+....|++.++|.+.-+...
T Consensus 161 --~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 161 --PHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred --CCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4455554 54444443322 34568999999999999999887754432222 245788899999988655443
No 116
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.93 E-value=0.00026 Score=74.59 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=80.3
Q ss_pred cccchhHHHHHHHHHHh---c-------C-----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCC
Q 002606 154 TVVGQQSQLEQVWKCLV---E-------G-----SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQ 218 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---~-------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (901)
.++|.++.+++|.+... - + ...-+.++|++|+||||+|+.++.... ..+......|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH---
Confidence 36777766666544321 0 1 122588999999999999988877652 122221123444442
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc-----------cccccccccCCCCCCCccc
Q 002606 219 IEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR-----------VDLVKVGVPLPSPQKSSES 287 (901)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~~ 287 (901)
.++ ...+... +.... ..+.+.. ..-+|++|++..- ..+..+...+....
T Consensus 99 -~~l----~~~~~g~-------~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~----- 158 (284)
T TIGR02880 99 -DDL----VGQYIGH-------TAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR----- 158 (284)
T ss_pred -HHH----hHhhccc-------chHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----
Confidence 122 2222111 11111 1122222 3368999998521 11112222222211
Q ss_pred ccccCCCCCCCCCCCCcEEEEecCChHHHhhhc--------CCccEEecCCChHHHHHHHHHHhcCC
Q 002606 288 KVKVGDPLPSPEKSSESKVVFTTRSEEVCGWME--------AHQNFKVACLSHNDAWELFQQKVGEE 346 (901)
Q Consensus 288 ~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~~--------~~~~~~l~~L~~~ea~~Lf~~~~~~~ 346 (901)
.+.+||+++.......... ....+++++++.+|-.+++...+...
T Consensus 159 --------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 159 --------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred --------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 4566777765433221111 13568999999999999998877543
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00023 Score=85.01 Aligned_cols=173 Identities=14% Similarity=0.167 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCC---------------------CCCeEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSST---------------------DFDFVIW 210 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------~F~~~~w 210 (901)
.++||.+..++.|..++..+... .+.++|+.|+||||+|+.+.+...-... +++ +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 35899999999999999887654 5789999999999999999887721110 011 112
Q ss_pred EEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH-----HccCceEEEecccccc--cccccccccCCCCCC
Q 002606 211 VVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI-----LKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQK 283 (901)
Q Consensus 211 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~ 283 (901)
+...... ..++... +.+. ..++.-++|||++... .....+...+....
T Consensus 94 idaas~~-----------------------~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP- 148 (824)
T PRK07764 94 IDAASHG-----------------------GVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP- 148 (824)
T ss_pred ecccccC-----------------------CHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-
Confidence 2111111 1111111 2111 2345558899999643 33444444443322
Q ss_pred CcccccccCCCCCCCCCCCCcEEEE-ecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHH
Q 002606 284 SSESKVKVGDPLPSPEKSSESKVVF-TTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTV 361 (901)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~gs~iii-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i 361 (901)
..+.+|+ ||....+... ......|++..++.++..+.+.+.+.......+ .+....|
T Consensus 149 ------------------~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lL 207 (824)
T PRK07764 149 ------------------EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLV 207 (824)
T ss_pred ------------------CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 4455554 5544455433 334678999999999999988887654432222 2346788
Q ss_pred HHHcCCChhHH
Q 002606 362 AKECGGLPLAL 372 (901)
Q Consensus 362 ~~~c~GlPLai 372 (901)
++.++|.+..+
T Consensus 208 a~~sgGdlR~A 218 (824)
T PRK07764 208 IRAGGGSVRDS 218 (824)
T ss_pred HHHcCCCHHHH
Confidence 99999988433
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00011 Score=82.60 Aligned_cols=167 Identities=11% Similarity=0.091 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
.-+.|+|..|+|||+|++.+.+.... ...-..+++++ ..++...+...++... .....+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHhc
Confidence 46899999999999999999987621 12223445553 3456666666553210 11223444444
Q ss_pred cCceEEEeccccccc---cc-ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh---------HHHhhhcC
Q 002606 255 KKKFVLLLDDIWQRV---DL-VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE---------EVCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~ 321 (901)
. .-+||+||+.... .+ +.+...+.... ..|..||+|+... .+...+..
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~------------------~~~k~iIltsd~~P~~l~~l~~rL~SR~~~ 266 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFI------------------ENDKQLFFSSDKSPELLNGFDNRLITRFNM 266 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHH------------------HcCCcEEEECCCCHHHHhhccHHHHHHHhC
Confidence 3 4488999995321 11 22222111100 0456788887543 23445556
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGR 377 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~ 377 (901)
.-.+.+++++.++-.+++++++...... ..--++...-|++.++|.|-.+.-+..
T Consensus 267 Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 267 GLSIAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred CceeccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 6788999999999999999988643211 011245788999999999987755543
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.89 E-value=0.00017 Score=79.83 Aligned_cols=175 Identities=14% Similarity=0.213 Sum_probs=96.9
Q ss_pred CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCH
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQI 219 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~ 219 (901)
.++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3578999999999887632 235578999999999999999999876 222 222221
Q ss_pred HHHHHHHHHHhCCCccccccccHHHHHHHHHHHH-ccCceEEEecccccccc------------c-ccccccCCCCCCCc
Q 002606 220 EKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-KKKKFVLLLDDIWQRVD------------L-VKVGVPLPSPQKSS 285 (901)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~------------~-~~~~~~~~~~~~~~ 285 (901)
..+. ... .... ......+.+.. ...+.+|++||++.-.. . ..+...+..
T Consensus 199 ~~l~----~~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----- 261 (389)
T PRK03992 199 SELV----QKF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE----- 261 (389)
T ss_pred HHHh----Hhh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh-----
Confidence 1111 111 0011 11222222222 34678999999954210 0 000000000
Q ss_pred ccccccCCCCCCCCCCCCcEEEEecCChHHHh-hh----cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHH
Q 002606 286 ESKVKVGDPLPSPEKSSESKVVFTTRSEEVCG-WM----EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELART 360 (901)
Q Consensus 286 ~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~ 360 (901)
........+..||.||...+... .+ .....++++..+.++-.++|+.++........-+ ...
T Consensus 262 ---------ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~ 328 (389)
T PRK03992 262 ---------MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEE 328 (389)
T ss_pred ---------ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHH
Confidence 00001113567777776543311 11 1245789999999999999998876543222223 355
Q ss_pred HHHHcCCCh
Q 002606 361 VAKECGGLP 369 (901)
Q Consensus 361 i~~~c~GlP 369 (901)
+++.+.|.-
T Consensus 329 la~~t~g~s 337 (389)
T PRK03992 329 LAELTEGAS 337 (389)
T ss_pred HHHHcCCCC
Confidence 666666653
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.89 E-value=0.00014 Score=76.13 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=32.9
Q ss_pred cccchhHHHHHHHHHHh---------c------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLV---------E------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++|.+..+++|.+... . +...-+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47888877766654321 0 134567899999999999999998865
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.0003 Score=74.07 Aligned_cols=155 Identities=10% Similarity=0.126 Sum_probs=80.7
Q ss_pred cccchhHHHHHHHHHHh--------c-------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCC
Q 002606 154 TVVGQQSQLEQVWKCLV--------E-------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQ 218 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~--------~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (901)
.++|.++.+++|.++.. . .....+.++|++|+||||+|+.+++.. ...+.-....|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecH---
Confidence 46777766665544321 0 122357889999999999999998765 1111111122444442
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc-----------cccccccccCCCCCCCccc
Q 002606 219 IEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR-----------VDLVKVGVPLPSPQKSSES 287 (901)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~~~~~~~~~~~~~ 287 (901)
.++. ...... ..... ..+.+.. ..-+|++|++..- +....+...+.+..
T Consensus 100 -~~l~----~~~~g~-------~~~~~-~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~----- 159 (287)
T CHL00181 100 -DDLV----GQYIGH-------TAPKT-KEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR----- 159 (287)
T ss_pred -HHHH----HHHhcc-------chHHH-HHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----
Confidence 1222 211110 11111 1122211 2349999998532 01111111121111
Q ss_pred ccccCCCCCCCCCCCCcEEEEecCChHHHhhh--------cCCccEEecCCChHHHHHHHHHHhcCC
Q 002606 288 KVKVGDPLPSPEKSSESKVVFTTRSEEVCGWM--------EAHQNFKVACLSHNDAWELFQQKVGEE 346 (901)
Q Consensus 288 ~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 346 (901)
.+.+||+++....+.... .....+.+++++.+|..+++.+.+...
T Consensus 160 --------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 160 --------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred --------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 456777777654432111 123578999999999999988887544
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00034 Score=80.38 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCC-CC-------------------CeEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSST-DF-------------------DFVIWV 211 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~F-------------------~~~~wv 211 (901)
.++||.+..++.|.+++..+... .+.++|+.|+||||+|+.+.+....... .. .-++.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 46899999999999999887655 4689999999999999999877621000 00 001111
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH-HccCceEEEecccccc--cccccccccCCCCCCCcccc
Q 002606 212 VVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI-LKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESK 288 (901)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~ 288 (901)
..+....++. ..++.+.+... ..+++-++|+|++... .....+...+....
T Consensus 93 daas~~gvd~--------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp------ 146 (584)
T PRK14952 93 DAASHGGVDD--------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP------ 146 (584)
T ss_pred ccccccCHHH--------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC------
Confidence 1111111111 11111111111 1245558899998542 33444444443322
Q ss_pred cccCCCCCCCCCCCCcEEE-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcC
Q 002606 289 VKVGDPLPSPEKSSESKVV-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECG 366 (901)
Q Consensus 289 ~~~~~~~~~~~~~~gs~ii-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~ 366 (901)
....+| +||....+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++
T Consensus 147 -------------~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~ 210 (584)
T PRK14952 147 -------------EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGG 210 (584)
T ss_pred -------------CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcC
Confidence 345545 45555555433 334678999999999999888887654432222 235678889999
Q ss_pred CChh-HHHHHHHHhc
Q 002606 367 GLPL-ALITIGRAMA 380 (901)
Q Consensus 367 GlPL-ai~~~g~~l~ 380 (901)
|.+- |+..+-.++.
T Consensus 211 GdlR~aln~Ldql~~ 225 (584)
T PRK14952 211 GSPRDTLSVLDQLLA 225 (584)
T ss_pred CCHHHHHHHHHHHHh
Confidence 9774 5555544443
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.6e-05 Score=56.85 Aligned_cols=39 Identities=41% Similarity=0.658 Sum_probs=21.8
Q ss_pred CCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccc
Q 002606 578 SLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELP 617 (901)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp 617 (901)
+|++|++++| .+..+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4566666666 45555555666666666666666655543
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=0.00011 Score=80.29 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=56.8
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQE 224 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (901)
..+++.++.++.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 34688899999999988754 577789999999999999999887 4445788899999999888776654
No 125
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.85 E-value=0.00031 Score=72.34 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=113.4
Q ss_pred cccchh---HHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC----CeEEEEEeCCcCCHHHHH
Q 002606 154 TVVGQQ---SQLEQVWKCLVEG---SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF----DFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 154 ~~vGr~---~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~ 223 (901)
.++|-. +.++++.+++... ..+-+.|+|.+|.|||++++++...+. ....- -.++.|.....++...++
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHH
Confidence 445543 3344555555432 456799999999999999999998762 11111 157788888999999999
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHHcc-CceEEEeccccccc--------ccccccccCCCCCCCcccccccCCC
Q 002606 224 ESIGEKIGLLNDTWKNRRIEQKALDIFRILKK-KKFVLLLDDIWQRV--------DLVKVGVPLPSPQKSSESKVKVGDP 294 (901)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (901)
..|+.+++.+... ..+.........+.++. +-=+||+|++.+.- +.-.....+.+.-
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL------------ 179 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL------------ 179 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc------------
Confidence 9999999987642 23334444444455543 33489999996521 1111111121111
Q ss_pred CCCCCCCCCcEEEEecCChHHHhh----h-cCCccEEecCCChHH-HHHHHHHHhcCC--ccCCChhHHHHHHHHHHHcC
Q 002606 295 LPSPEKSSESKVVFTTRSEEVCGW----M-EAHQNFKVACLSHND-AWELFQQKVGEE--TLNCHPEILELARTVAKECG 366 (901)
Q Consensus 295 ~~~~~~~~gs~iiiTtR~~~v~~~----~-~~~~~~~l~~L~~~e-a~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~ 366 (901)
.-+-|.+-|++..-+-. + .-..++.++....++ ...|+......- ....+-...++++.|...++
T Consensus 180 -------~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 180 -------QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred -------CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 33556666654322111 1 123556676666544 444443322111 11122233678999999999
Q ss_pred CChhHH
Q 002606 367 GLPLAL 372 (901)
Q Consensus 367 GlPLai 372 (901)
|+.=-+
T Consensus 253 G~iG~l 258 (302)
T PF05621_consen 253 GLIGEL 258 (302)
T ss_pred CchHHH
Confidence 986444
No 126
>PF14516 AAA_35: AAA-like domain
Probab=97.85 E-value=0.00099 Score=72.04 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=119.7
Q ss_pred CCcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-----CCHHHHHH--
Q 002606 152 EPTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-----LQIEKIQE-- 224 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~-- 224 (901)
.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. +. ..+ .++++.+..- .+.+..++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 456789987777788777663 3689999999999999999998887 22 244 4557765432 24555444
Q ss_pred --HHHHHhCCCccc---cc--cccHHHHHHHHHHHH---ccCceEEEeccccccccc----ccccccCCCCCCCcccccc
Q 002606 225 --SIGEKIGLLNDT---WK--NRRIEQKALDIFRIL---KKKKFVLLLDDIWQRVDL----VKVGVPLPSPQKSSESKVK 290 (901)
Q Consensus 225 --~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~----~~~~~~~~~~~~~~~~~~~ 290 (901)
.|.+++++.... |. ..........+.+.+ .+++.+|++|+|+..... .++...++. |..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~-------~~~ 158 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRS-------WYE 158 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHH-------HHH
Confidence 444555544311 11 112223333344433 258999999999643211 111111110 000
Q ss_pred cCCCCCCCCCCCCcEEEEe-cCChHHH----hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHc
Q 002606 291 VGDPLPSPEKSSESKVVFT-TRSEEVC----GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKEC 365 (901)
Q Consensus 291 ~~~~~~~~~~~~gs~iiiT-tR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 365 (901)
.....+. + ..=+-|++. |+..... +.+.....++|++++.+|+..|..+.-..- .+ +..++|...+
T Consensus 159 ~~~~~~~-~-~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~~---~~~~~l~~~t 229 (331)
T PF14516_consen 159 QRKNNPI-W-QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----SQ---EQLEQLMDWT 229 (331)
T ss_pred hcccCcc-c-ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----CH---HHHHHHHHHH
Confidence 0000000 0 000112221 1111111 112334578999999999999988764321 11 2288999999
Q ss_pred CCChhHHHHHHHHhcc
Q 002606 366 GGLPLALITIGRAMAC 381 (901)
Q Consensus 366 ~GlPLai~~~g~~l~~ 381 (901)
||+|.-+..++..+..
T Consensus 230 gGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 230 GGHPYLVQKACYLLVE 245 (331)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999975
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00044 Score=80.74 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=108.3
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+.+... ...... .....+.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999999887654 4568999999999999999987761 110000 0001111122222222111
Q ss_pred CCcccc---ccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLNDTW---KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
...-.. .....++. ..+.+.+ .+++-++|+|++... ...+.+...+....
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp------------------- 148 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP------------------- 148 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------------------
Confidence 100000 01111111 1122221 245568999998543 33444444333222
Q ss_pred CCcEEEEec-CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 302 SESKVVFTT-RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 302 ~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
..+.+|++| ....+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 149 ~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 345565555 33334322 233467899999999999988887765432222 346788999999988655443
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00051 Score=79.47 Aligned_cols=199 Identities=14% Similarity=0.138 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE-eCCcCCHHHHHHHHHHHh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV-VSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~l 230 (901)
.+++|-+..++.+.+.+..+... .+.++|+.|+||||+|+.+.+... -....+.-.|.. +......-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 45899999999999998877654 588999999999999999887762 111111001110 000111111111111100
Q ss_pred CCCcccc---ccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCC
Q 002606 231 GLLNDTW---KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEK 300 (901)
Q Consensus 231 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (901)
....... .....++... +.+.+ .+.+-++|+||+... .....+...+....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp------------------ 155 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP------------------ 155 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC------------------
Confidence 0000000 0111222221 22222 244558899998543 23444444443322
Q ss_pred CCCcEEE-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChh-HHHHH
Q 002606 301 SSESKVV-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPL-ALITI 375 (901)
Q Consensus 301 ~~gs~ii-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 375 (901)
..+.+| +|++...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+
T Consensus 156 -~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 156 -PHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred -CCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 334544 45554555433 345678999999999998888876653322222 3457889999999654 44433
No 129
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.00028 Score=70.87 Aligned_cols=68 Identities=3% Similarity=-0.012 Sum_probs=45.7
Q ss_pred CCcEEEEecCChH-------HHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 302 SESKVVFTTRSEE-------VCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 302 ~gs~iiiTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
.|..+|+|++... +.+.+...-++++++++.++-..++++.+.......+ +++..-|++.+.|.--.+
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 5678999887442 3344455668999999999988888887754332223 346777777776655443
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00041 Score=80.77 Aligned_cols=178 Identities=16% Similarity=0.181 Sum_probs=107.8
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcc--------------------cCCCCCeEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQ--------------------SSTDFDFVIWV 211 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~F~~~~wv 211 (901)
.+++|.+..++.+..++..+... .+.++|+.|+||||+|+.+...... ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 35899999999999999887654 5789999999999999988776510 0113332 222
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccc
Q 002606 212 VVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKV 289 (901)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~ 289 (901)
..+....++++. .+++++.... ..+++=++|+|++... ..+..+...+....
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp------- 149 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP------- 149 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-------
Confidence 222222222221 2222221100 1234448899998543 33444544443322
Q ss_pred ccCCCCCCCCCCCCcEEEE-ecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC
Q 002606 290 KVGDPLPSPEKSSESKVVF-TTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG 367 (901)
Q Consensus 290 ~~~~~~~~~~~~~gs~iii-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 367 (901)
.++.+|+ ||+...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|
T Consensus 150 ------------~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~g 214 (614)
T PRK14971 150 ------------SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADG 214 (614)
T ss_pred ------------CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCC
Confidence 3455554 5555555433 334578999999999999999887655442222 2357889999999
Q ss_pred ChhHH
Q 002606 368 LPLAL 372 (901)
Q Consensus 368 lPLai 372 (901)
..--+
T Consensus 215 dlr~a 219 (614)
T PRK14971 215 GMRDA 219 (614)
T ss_pred CHHHH
Confidence 77544
No 131
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=5.9e-06 Score=82.38 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=41.1
Q ss_pred CCCCccEEEecCCcccccCc--hHHhcCCCCCEEEccCCCc---cccCcccccCCCCCCEEeccCCCCc--ccchhhhcc
Q 002606 551 RCPHLLTLFLNNNVKLRISD--GFLQYMSSLKVLSLSHNEV---LFELPSDISRLVSLELLDLSNSRIR--ELPEELAAL 623 (901)
Q Consensus 551 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~---~~~lp~~i~~l~~L~~L~l~~~~i~--~lp~~i~~l 623 (901)
.+..++.++|.+|.+....+ ..+.+|++|++|+|+.|+. +..+| -.+.+|+.|-|.++.+. .....+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 45566666666665443322 2244566666666666532 11222 23445666666655443 344445555
Q ss_pred ccccccccccc
Q 002606 624 VNLKCLNLEYT 634 (901)
Q Consensus 624 ~~L~~L~L~~~ 634 (901)
+.++.|+++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 55555555554
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.7e-05 Score=56.79 Aligned_cols=41 Identities=46% Similarity=0.618 Sum_probs=33.4
Q ss_pred CCCCEEeccCCCCcccchhhhccccccccccccccCcCCCCc
Q 002606 601 VSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPW 642 (901)
Q Consensus 601 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 642 (901)
++|++|++++|+|+.+|..+++|++|+.|++++| .+..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999999999988999999999999998 5666653
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.78 E-value=0.00017 Score=75.05 Aligned_cols=115 Identities=24% Similarity=0.323 Sum_probs=81.1
Q ss_pred CCcccchhHHHHHHHHHHhcCC---ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 152 EPTVVGQQSQLEQVWKCLVEGS---AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
.+.+.+|+.++..+..++.... +..|.|+|.+|+|||.+.+++.+.. .. ..+|+++-+.++...+++.|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4578899999999999987643 3466899999999999999999886 22 3589999999999999999999
Q ss_pred HhCCCc-cccc--c--ccHHHHHHHHHH--HHc--cCceEEEecccccccccc
Q 002606 229 KIGLLN-DTWK--N--RRIEQKALDIFR--ILK--KKKFVLLLDDIWQRVDLV 272 (901)
Q Consensus 229 ~l~~~~-~~~~--~--~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~ 272 (901)
+.+... +... . .+..+....+.+ ... ++.++||||+++.-.+.+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 985222 1111 1 111222222333 122 358999999996644433
No 134
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00055 Score=76.70 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
..+.|+|..|+|||+|++.+++... ....-..+++++. .++...+...+... .. ..+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHHH
Confidence 4689999999999999999999872 2211134566643 34444454444211 11 22333443
Q ss_pred cCceEEEecccccccc---c-ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChH---------HHhhhcC
Q 002606 255 KKKFVLLLDDIWQRVD---L-VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEE---------VCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~ 321 (901)
+ .-+||+||+..... + +.+...+.... ..|..+|+|+.... +.+.+..
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~------------------~~~~~iiits~~~p~~l~~l~~~l~SRl~~ 259 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALH------------------ENGKQIVLTSDRPPKELPGLEERLRSRFEW 259 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHH------------------HCCCCEEEecCCCHHHHhhhhhhhhhhccC
Confidence 3 34889999964211 1 11111111000 04556788775421 2233334
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
...+.+++.+.++-..++++++.......+ +++...|++.+.|.+-.+
T Consensus 260 g~~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 260 GLVVDIEPPDLETRLAILQKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 457899999999999999998865543333 356777888888776544
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00029 Score=79.04 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=103.0
Q ss_pred cccchhHHH--HHHHHHHhcC-CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC-CeEEEEEeCCcCCHHHHHHHHHHH
Q 002606 154 TVVGQQSQL--EQVWKCLVEG-SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF-DFVIWVVVSKDLQIEKIQESIGEK 229 (901)
Q Consensus 154 ~~vGr~~~~--~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~ 229 (901)
.++|-.... ....+..... ...-+.|+|..|+|||+|++.+++... +... ..++|++. .++...+...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHH
Confidence 345754332 2333333322 234599999999999999999999872 2222 24667653 3455556555
Q ss_pred hCCCccccccccHHHHHHHHHHHHccCceEEEeccccccc---cc-ccccccCCCCCCCcccccccCCCCCCCCCCCCcE
Q 002606 230 IGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV---DL-VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESK 305 (901)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~ 305 (901)
+... ..+ .+.+....+.-+||+||+.... .+ +.+...+.... ..|..
T Consensus 179 ~~~~-------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~------------------~~~k~ 229 (440)
T PRK14088 179 MKEG-------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH------------------DSGKQ 229 (440)
T ss_pred Hhcc-------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH------------------HcCCe
Confidence 4311 111 2333344445689999996321 11 11211111000 04557
Q ss_pred EEEecC-ChH--------HHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 306 VVFTTR-SEE--------VCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 306 iiiTtR-~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
||+||. ... +.+.+.....+++++.+.+.-..++++++.......+ +++...|++.+.|..-.+
T Consensus 230 iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 230 IVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred EEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 888874 332 1223344567899999999999999998865433333 346788888887765444
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00065 Score=76.86 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=106.2
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccC-CC----------------CC-eEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSS-TD----------------FD-FVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~----------------F~-~~~wv~~ 213 (901)
..++|-+..++.+...+..+... ...++|+.|+||||+|+.+.+...... .. +. -++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 45899999999999999887655 568999999999999998887651100 01 00 1122211
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccccc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKV 291 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (901)
+....++.+. +++++.... -..+++-++|+|++... .....+...+....
T Consensus 94 as~~gId~IR-elie~~~~~------------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp--------- 145 (535)
T PRK08451 94 ASNRGIDDIR-ELIEQTKYK------------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP--------- 145 (535)
T ss_pred ccccCHHHHH-HHHHHHhhC------------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcC---------
Confidence 1111111111 111111000 01134558899999543 23333433333222
Q ss_pred CCCCCCCCCCCCcEEEEecCCh-HHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 292 GDPLPSPEKSSESKVVFTTRSE-EVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 292 ~~~~~~~~~~~gs~iiiTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
..+++|++|.+. .+.. .......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+
T Consensus 146 ----------~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 146 ----------SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSL 212 (535)
T ss_pred ----------CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcH
Confidence 456666666543 3322 2233578999999999999998887755432222 346789999999998
Q ss_pred hHHHHH
Q 002606 370 LALITI 375 (901)
Q Consensus 370 Lai~~~ 375 (901)
--+..+
T Consensus 213 R~alnl 218 (535)
T PRK08451 213 RDTLTL 218 (535)
T ss_pred HHHHHH
Confidence 655444
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00071 Score=78.71 Aligned_cols=185 Identities=14% Similarity=0.131 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
..++|.+..++.+..++..++. ..+.++|+.|+||||+|+.++...........+ .+....... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~----------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL----------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC----------CchhHHHHh---hc
Confidence 3579999999999999988754 466789999999999999998765110000000 000000000 00
Q ss_pred CCcccc-----ccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCC
Q 002606 232 LLNDTW-----KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 232 ~~~~~~-----~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
.+.... .....++ +..+.+.+ .+++-++|+|++... ..+..+...+....
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP----------------- 146 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP----------------- 146 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-----------------
Confidence 000000 0011111 11222222 245668999998542 23444443333221
Q ss_pred CCCCcE-EEEecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 300 KSSESK-VVFTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 300 ~~~gs~-iiiTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
.... |++|++...+... ......+++.+++.++..+.+...+........ .+.+..|++.++|.+--+.
T Consensus 147 --~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 147 --KHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred --CceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3344 4455555555432 344578999999999999988876544332222 2357789999999775433
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00077 Score=78.50 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
..++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++.... ...+.. ...........+.|.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c--~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC--LNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC--CCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 3579999999999999987653 57789999999999999999888621 111000 0001111122222222111
Q ss_pred CCc---cccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLN---DTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
... ........++..+ +.+.+ .+++-++|+|++... .....+...+....
T Consensus 90 ~D~~ei~~~~~~~vd~IRe-ii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp------------------- 149 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRE-LIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP------------------- 149 (620)
T ss_pred ccEEEEeccccCCHHHHHH-HHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-------------------
Confidence 100 0000111111111 11111 244558899999643 33444444443322
Q ss_pred CCcEEEE-ecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 302 SESKVVF-TTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 302 ~gs~iii-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
....+|+ |+....+... ......+++.+++.++....+.+.+........ .+.+..|++.++|.+..+..+
T Consensus 150 ~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 150 PRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred cCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3344444 5443344322 234567889999999988888877654332222 235788999999988655443
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00066 Score=76.31 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=104.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC--------------------CCCCeEEEE
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS--------------------TDFDFVIWV 211 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv 211 (901)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987765 5678899999999999999987662100 0111 1111
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccc--cccccccccCCCCCCCccccc
Q 002606 212 VVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKV 289 (901)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~ 289 (901)
........+++ +.+.+.+. ..-..+++-++|+|++... ...+.+...+....
T Consensus 96 ~g~~~~gid~i-r~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~------- 149 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP------- 149 (451)
T ss_pred eccccCCHHHH-HHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-------
Confidence 11111111111 11111110 0011255668899998543 22333333333222
Q ss_pred ccCCCCCCCCCCCCcEEEEec-CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC
Q 002606 290 KVGDPLPSPEKSSESKVVFTT-RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG 367 (901)
Q Consensus 290 ~~~~~~~~~~~~~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 367 (901)
.+..+|++| +...+... ......+++.++++++....+.+.+.......+ .+.+..|++.++|
T Consensus 150 ------------~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~g 214 (451)
T PRK06305 150 ------------QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQG 214 (451)
T ss_pred ------------CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCC
Confidence 345555554 44434322 234567899999999999988877654332222 3467889999999
Q ss_pred Chh-HHHHH
Q 002606 368 LPL-ALITI 375 (901)
Q Consensus 368 lPL-ai~~~ 375 (901)
.+- |+..+
T Consensus 215 dlr~a~~~L 223 (451)
T PRK06305 215 SLRDAESLY 223 (451)
T ss_pred CHHHHHHHH
Confidence 764 44433
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.73 E-value=0.00052 Score=83.21 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=41.0
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++||+.++.++++.|......-+.++|.+|+||||+|+.++...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988766677799999999999999999876
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0012 Score=74.74 Aligned_cols=178 Identities=15% Similarity=0.139 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhccc--CC----------------CCCeEEEEEe
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQS--ST----------------DFDFVIWVVV 213 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~F~~~~wv~~ 213 (901)
..++|-+..++.+.+++..+... .+.++|+.|+||||+|+.++...... .. .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 35799999999999999876544 56789999999999999988765110 00 0111222221
Q ss_pred CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcc
Q 002606 214 SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSE 286 (901)
Q Consensus 214 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~ 286 (901)
+.... .++ +..+.+.. .+++-++|+|++... .....+...+....
T Consensus 96 as~~g-----------------------vd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp---- 147 (486)
T PRK14953 96 ASNRG-----------------------IDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP---- 147 (486)
T ss_pred ccCCC-----------------------HHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC----
Confidence 11111 111 11122221 345669999998543 22333333333221
Q ss_pred cccccCCCCCCCCCCCCcEEEE-ecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHH
Q 002606 287 SKVKVGDPLPSPEKSSESKVVF-TTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKE 364 (901)
Q Consensus 287 ~~~~~~~~~~~~~~~~gs~iii-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~ 364 (901)
....+|+ ||+...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.
T Consensus 148 ---------------~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~ 209 (486)
T PRK14953 148 ---------------PRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQA 209 (486)
T ss_pred ---------------CCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 3344444 5554444322 234567899999999999888887654432222 2356788889
Q ss_pred cCCChhHHHHHH
Q 002606 365 CGGLPLALITIG 376 (901)
Q Consensus 365 c~GlPLai~~~g 376 (901)
++|.+..+....
T Consensus 210 s~G~lr~al~~L 221 (486)
T PRK14953 210 SEGGMRDAASLL 221 (486)
T ss_pred cCCCHHHHHHHH
Confidence 999776554433
No 142
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=8e-06 Score=72.06 Aligned_cols=109 Identities=20% Similarity=0.295 Sum_probs=88.8
Q ss_pred cEEEEeecCccccccc----CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEec
Q 002606 533 VRRLSLMENQIKVILG----MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDL 608 (901)
Q Consensus 533 lr~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 608 (901)
+..++++++.+..+++ +.....|...++++|.+.++|+.+-.+++.+..|++++| .+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 4455666665544433 456778888999999999999988788889999999999 78889999999999999999
Q ss_pred cCCCCcccchhhhccccccccccccccCcCCCCcc
Q 002606 609 SNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWN 643 (901)
Q Consensus 609 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 643 (901)
+.|++...|.-|..|.+|-.|+..++ ....+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 99999999998888999999998887 45667754
No 143
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.71 E-value=0.00038 Score=70.46 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEE-EEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVI-WVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|-+..+.-+.+.+.....+....+|++|.|||+-|+.+.... --.+-|.+++ =.++|......-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh------
Confidence 4679999999999999988778899999999999999999988776 2234554433 2344443322211000
Q ss_pred CCccccccccHHHHHHHHHHHH--ccCc-eEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEE
Q 002606 232 LLNDTWKNRRIEQKALDIFRIL--KKKK-FVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKV 306 (901)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~i 306 (901)
..+...+.....+.. .-++ -++|||+.+.. +.|..+.....+.. ..++.
T Consensus 109 -------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-------------------~~trF 162 (346)
T KOG0989|consen 109 -------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-------------------RTTRF 162 (346)
T ss_pred -------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-------------------cceEE
Confidence 011111110000000 0123 37899999764 56777766555433 44555
Q ss_pred E-EecCChHHHhhh-cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 307 V-FTTRSEEVCGWM-EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 307 i-iTtR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
| ||+--..+.... ...+.|+.++|.+++..+-++..+..+....++ +..+.|++.++|----+.+
T Consensus 163 iLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDLRRAIT 229 (346)
T ss_pred EEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 4 444333332221 234578999999999999999988766644443 3578899999886543333
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.71 E-value=0.00026 Score=78.42 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=95.0
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 468999999888877631 134568899999999999999999876 3333 222111
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCC-cccccccCCCCCCCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKS-SESKVKVGDPLPSPE 299 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 299 (901)
.+. ... ...........+.....+.+.+|+||+++....-. ......+... ..........+....
T Consensus 252 eL~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR--~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ELI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKR--YDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred hhh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccC--CCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 111 111 01111111122222334578899999985321000 0000000000 000000000000000
Q ss_pred CCCCcEEEEecCChHHHhh-h----cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 300 KSSESKVVFTTRSEEVCGW-M----EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
...+.+||.||...+.... + .....+++...+.++..++|..++.........++ ..++..+.|+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 1145678888875544221 1 23467899999999999999987755432222233 4445555544
No 145
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.69 E-value=0.00047 Score=78.23 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
.-+.|+|..|+|||+|++.+.+... ....-..+++++.. ++...+...+.. ... ..+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~~ 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKYR 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHHh
Confidence 5689999999999999999999872 22112345566432 333444444321 111 22334444
Q ss_pred cCceEEEeccccccc----ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChH---------HHhhhcC
Q 002606 255 KKKFVLLLDDIWQRV----DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEE---------VCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~---------v~~~~~~ 321 (901)
+.-+||+||+.... ..+.+...+.... ..|..||+||.... +.+.+..
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~------------------~~~~~iiits~~~p~~l~~l~~~l~SRl~~ 271 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALH------------------EAGKQIVLTSDRPPKELPGLEERLRSRFEW 271 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH------------------HCCCcEEEECCCCHHHHHHHHHHHHhHhcC
Confidence 34489999995321 1111211111000 03456788776432 2334444
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
...+++++.+.++-..++++++.......+ +++...|++.+.|..-.+
T Consensus 272 gl~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 272 GLTVDIEPPDLETRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred CeeEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 568999999999999999998865432333 346788888888876644
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.65 E-value=0.0026 Score=63.54 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCL----VEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.|.+++.|++-. ......-+.+||..|+|||++++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 46899999998887643 33456678889999999999999999988
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0019 Score=74.44 Aligned_cols=191 Identities=15% Similarity=0.118 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|-+..++.+..++..+... .+.++|+.|+||||+|+.+.+.... ...... ..+..- ..-+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccc----hHHHHHHcCCC
Confidence 36899999999999999886544 6889999999999999999887621 100000 000000 00011110000
Q ss_pred CCc---cccccccHHHHHHHHHHH-----HccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLN---DTWKNRRIEQKALDIFRI-----LKKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
... ........++... +.+. ..+++-++|+|++... ..+..+...+....
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp------------------- 147 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP------------------- 147 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-------------------
Confidence 000 0000011122111 1111 1345568999998543 33444444443322
Q ss_pred CCcEEEEec-CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 302 SESKVVFTT-RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 302 ~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
..+.+|++| ....+... ......++..+++.++..+.+.+.+.......+ .+.+..|++.++|.+-.+..
T Consensus 148 ~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 148 PYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 445555554 43444332 233567899999999999888887654432222 34577888999998854433
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.00063 Score=76.16 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
.-+.|+|+.|+|||+|++.+.+.... ....+++++ ...+...+...+... . ...+++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 56889999999999999999998721 223355654 234444444444211 1 122333333
Q ss_pred cCceEEEecccccccc----cccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh---------HHHhhhcC
Q 002606 255 KKKFVLLLDDIWQRVD----LVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE---------EVCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~ 321 (901)
..-+|++||+..... .+.+...+.... ..|..||+||... .+.+.+..
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~------------------~~~k~IIlts~~~p~~l~~l~~rL~SR~~~ 262 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLH------------------TEGKLIVISSTCAPQDLKAMEERLISRFEW 262 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHH------------------HCCCcEEEecCCCHHHHhhhHHHHHhhhcC
Confidence 344888999854211 111111110000 0356788887542 22334445
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
...+.+.+++.++-..++++++.......++ ++..-|+..+.|.
T Consensus 263 Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~---evl~~la~~~~~d 306 (445)
T PRK12422 263 GIAIPLHPLTKEGLRSFLERKAEALSIRIEE---TALDFLIEALSSN 306 (445)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCC
Confidence 5788999999999999999888654433332 3455566665543
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00031 Score=84.53 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=40.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||+++++++++.|......-+.++|++|+|||++|+.++...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999987666667899999999999999999886
No 150
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00087 Score=76.37 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
..+.|+|..|+|||.|++.+++...+ ...-..+++++. .++...+...+.. .. ...+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 111234566643 3444444443321 11 112333333
Q ss_pred cCceEEEecccccc---cccc-cccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh---------HHHhhhcC
Q 002606 255 KKKFVLLLDDIWQR---VDLV-KVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE---------EVCGWMEA 321 (901)
Q Consensus 255 ~kr~LlVlDdv~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~---------~v~~~~~~ 321 (901)
+ -=+|||||+... ..|. .+...+.... ..|..|||||+.. .+.+.+..
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~------------------e~gk~IIITSd~~P~eL~~l~~rL~SRf~~ 437 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLH------------------NANKQIVLSSDRPPKQLVTLEDRLRNRFEW 437 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHH------------------hcCCCEEEecCCChHhhhhccHHHHhhhhc
Confidence 3 247889999532 1121 1111111000 0456788888753 23455566
Q ss_pred CccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhH
Q 002606 322 HQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLA 371 (901)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 371 (901)
.-+++++..+.+.-..++++++.......+ ++++.-|++.+.+..-.
T Consensus 438 GLvv~I~~PD~EtR~aIL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 438 GLITDVQPPELETRIAILRKKAVQEQLNAP---PEVLEFIASRISRNIRE 484 (617)
T ss_pred CceEEcCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhccCCHHH
Confidence 778999999999999999998866543333 34667777776655433
No 151
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.00038 Score=75.43 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=39.6
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4679999999999999987654 567779999999999999998875
No 152
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0043 Score=62.42 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=99.7
Q ss_pred CcccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
.+|||.++.++++.=++.. +...-|.++|++|.||||||.-++++. ...+. ++-+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHH
Confidence 3689999988887666643 456789999999999999999999988 22221 11111101011111222
Q ss_pred HHhCCCccccccccHHHHHHHHHHHHccCceEEEeccccccc---------ccccccccCCCCCCCcccccccCCCCCCC
Q 002606 228 EKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV---------DLVKVGVPLPSPQKSSESKVKVGDPLPSP 298 (901)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (901)
..+ +. .=++.+|.+..-. ..+++..-.--+..+....+. .+.
T Consensus 99 t~L-----------------------e~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~-ldL---- 149 (332)
T COG2255 99 TNL-----------------------EE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIR-LDL---- 149 (332)
T ss_pred hcC-----------------------Cc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEe-ccC----
Confidence 111 11 1245556653210 111111000000000000000 000
Q ss_pred CCCCCcEEEEecCChHHHhhhc--CCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 299 EKSSESKVVFTTRSEEVCGWME--AHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 299 ~~~~gs~iiiTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
.+-+-|=-|||.-.+..... ..-+.+++--+.+|-.+...+.+..-+.... ++-+.+|+++..|-|--+.-+-
T Consensus 150 --ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 150 --PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred --CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHH
Confidence 02233335888766544332 2346689999999999999988865443333 3468999999999997554444
Q ss_pred HHh
Q 002606 377 RAM 379 (901)
Q Consensus 377 ~~l 379 (901)
+..
T Consensus 225 rRV 227 (332)
T COG2255 225 RRV 227 (332)
T ss_pred HHH
Confidence 333
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.58 E-value=0.0013 Score=72.41 Aligned_cols=187 Identities=11% Similarity=0.123 Sum_probs=95.3
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~----s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG----S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 578999888888776531 235678999999999999999999876 3333 22211 1
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCc-ccccccCCCCCCCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSS-ESKVKVGDPLPSPE 299 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 299 (901)
.+ .... .......+...+.......+.+|++|+++.-..-. . .......... .........+....
T Consensus 214 ~l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r-~-~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 EF----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR-F-DAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HH----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccc-c-cccCCccHHHHHHHHHHHHHhhccC
Confidence 11 1111 01111111122222334578999999985321000 0 0000000000 00000000000011
Q ss_pred CCCCcEEEEecCChHHH-hh-h---cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 300 KSSESKVVFTTRSEEVC-GW-M---EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~-~~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
...+..||.||...+.. .. . .....+++...+.++..++|+..........+-+ ..++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 11456788888755432 11 1 2345689999999998888887765443222223 345566666653
No 154
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00013 Score=78.63 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=46.1
Q ss_pred cccccEEEEeecCcccccccCCCCCCccEEEecCC-cccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEe
Q 002606 529 EWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNN-VKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLD 607 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 607 (901)
.+.++++|+++++.+..+|.++ ++|++|.+.+| .+..+|.. + .++|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 3456777777777666666432 35777777665 34444432 2 24677777777655555653 355555
Q ss_pred ccCCC---Ccccchh
Q 002606 608 LSNSR---IRELPEE 619 (901)
Q Consensus 608 l~~~~---i~~lp~~ 619 (901)
++++. +..||.+
T Consensus 119 L~~n~~~~L~~LPss 133 (426)
T PRK15386 119 IKGSATDSIKNVPNG 133 (426)
T ss_pred eCCCCCcccccCcch
Confidence 65543 3455543
No 155
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=9.4e-05 Score=70.13 Aligned_cols=84 Identities=29% Similarity=0.449 Sum_probs=57.5
Q ss_pred ccEEEEeecCcccccccCCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCc--ccccCCCCCCEEecc
Q 002606 532 KVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELP--SDISRLVSLELLDLS 609 (901)
Q Consensus 532 ~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~i~~l~~L~~L~l~ 609 (901)
..-.+++++|.+..++.++.++.|.+|.+.+|.++.+.+..-.-+++|..|.|.+| .+..+- ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 44566777777777777777888888888888777777776666777888888777 444332 234456677777777
Q ss_pred CCCCccc
Q 002606 610 NSRIREL 616 (901)
Q Consensus 610 ~~~i~~l 616 (901)
+|.++..
T Consensus 122 ~Npv~~k 128 (233)
T KOG1644|consen 122 GNPVEHK 128 (233)
T ss_pred CCchhcc
Confidence 7766544
No 156
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.0016 Score=75.72 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=105.2
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+.+.... ...... ........-..|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999988765 45689999999999999998877521 110000 00000000001100000
Q ss_pred CCc---cccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLN---DTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
... +.......++ +..+.+.+ .+++-++|+|++... .....+...+....
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp------------------- 147 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP------------------- 147 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-------------------
Confidence 000 0000011111 11122222 234458899999543 23334443333222
Q ss_pred CCcEEE-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh-hHHHHHHHH
Q 002606 302 SESKVV-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP-LALITIGRA 378 (901)
Q Consensus 302 ~gs~ii-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~g~~ 378 (901)
..+.+| +||....+... ......+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-..
T Consensus 148 ~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 148 PHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred CCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345555 45555555433 334567899999999998888876654432222 235678889998866 444444333
No 157
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.51 E-value=0.00018 Score=77.69 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCC-CCcccchh
Q 002606 551 RCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNS-RIRELPEE 619 (901)
Q Consensus 551 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~ 619 (901)
.|++++.|++++|.+..+|. + ..+|+.|.+++|..+..+|..+. .+|++|++++| .+..+|.+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 45566666666665555552 1 23466666666555555554442 45666666666 55556543
No 158
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0043 Score=61.66 Aligned_cols=191 Identities=17% Similarity=0.173 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe-CCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV-SKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
++.+++.++|.-|+|||.+++...... . + +.++-|.+ .+......+...|+..+.......-....++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 456799999999999999999655544 1 1 11222333 3445777888888888876321111112233333343
Q ss_pred HHH-ccCc-eEEEecccccc--cccccccccC--CCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHhhhcCCcc
Q 002606 251 RIL-KKKK-FVLLLDDIWQR--VDLVKVGVPL--PSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCGWMEAHQN 324 (901)
Q Consensus 251 ~~l-~~kr-~LlVlDdv~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~~~~~~ 324 (901)
... +++| ..+++||.... +.++.++-.. .........++.+|++-.. - --|-......-.....
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~--------~--~lr~~~l~e~~~R~~i 193 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLR--------P--RLRLPVLRELEQRIDI 193 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccc--------h--hhchHHHHhhhheEEE
Confidence 333 4677 89999998542 2233222111 1111000111222211000 0 0022211221122233
Q ss_pred -EEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHH
Q 002606 325 -FKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGR 377 (901)
Q Consensus 325 -~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~ 377 (901)
|++.|++.++...+++.+......+.+---.+....|.....|.|.+|..++.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 89999999999999888876543111111234567888899999999977664
No 159
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.0034 Score=67.43 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=105.6
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
..++||+.+++.+.+++.. ...+-+-|.|.+|.|||.+...++.+.......| .++++....--....++..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHHHH
Confidence 4689999999999999875 3567889999999999999999999873222222 4566665544456677777777
Q ss_pred HhC-CCccccccccHHHHHHHHHHHHccC--ceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCCCC
Q 002606 229 KIG-LLNDTWKNRRIEQKALDIFRILKKK--KFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSE 303 (901)
Q Consensus 229 ~l~-~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 303 (901)
.+- ... ......+....+.+..++. -+|+|+|..+.-. .-..+...|. ++.+ .+
T Consensus 229 ~~~q~~~---s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFe---------------wp~l---p~ 287 (529)
T KOG2227|consen 229 SLLQDLV---SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFE---------------WPKL---PN 287 (529)
T ss_pred HHHHHhc---CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehh---------------cccC---Cc
Confidence 661 111 1112245555666666553 5899999985321 1111111111 1111 45
Q ss_pred cEEEEecCC-------hHHHhh----hcCCccEEecCCChHHHHHHHHHHhcCCc
Q 002606 304 SKVVFTTRS-------EEVCGW----MEAHQNFKVACLSHNDAWELFQQKVGEET 347 (901)
Q Consensus 304 s~iiiTtR~-------~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 347 (901)
+++|+.--. +-+... .-....+..++-+.++-.+.|.++.....
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 665543211 111111 12235678899999999999999876543
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0032 Score=72.89 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=103.1
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+...... ...-+ ..+.+....-+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999987654 45678999999999999998776511 11000 000011111111111000
Q ss_pred CCcccc---ccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLNDTW---KNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
...-.. .....++ +..+.+.. .+++-++|+|++..- ..+..+...+....
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp------------------- 147 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP------------------- 147 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-------------------
Confidence 000000 0011111 11122221 345568899999643 23444443333221
Q ss_pred CCcEEE-EecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHH
Q 002606 302 SESKVV-FTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALI 373 (901)
Q Consensus 302 ~gs~ii-iTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 373 (901)
....+| .||....+... ......++..+++.++..+.+...+.......+ .+.+..|++.++|.+..+.
T Consensus 148 ~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 148 AHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 334444 45554444322 234567899999999999988887754432222 2457788888888775443
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.00066 Score=82.71 Aligned_cols=45 Identities=27% Similarity=0.416 Sum_probs=40.2
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||+++++++++.|......-+.++|++|+|||++|+.++...
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999987655666799999999999999998876
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0037 Score=66.74 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=109.3
Q ss_pred cccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhccc------------CCCCCeEEEEEeCCcCCHH
Q 002606 154 TVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQS------------STDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~F~~~~wv~~~~~~~~~ 220 (901)
.++|.+..++.+...+..++. ....++|+.|+||+++|..+.+..... ...+.-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 579999999999999988764 789999999999999999887765211 1112223444321000000
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGD 293 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (901)
.+-.+-++..+...........++ +..+.+++ .+.+-++|+|++... .....+...+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp----------- 152 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG----------- 152 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-----------
Confidence 000011111111000001112222 22344444 245668999998543 23333433332211
Q ss_pred CCCCCCCCCCcEEEEecCChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 294 PLPSPEKSSESKVVFTTRSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 294 ~~~~~~~~~gs~iiiTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
+..-|++|+....+... .+....+++.++++++..+.+.+...... . ......++..++|.|..+
T Consensus 153 --------~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~----~~~~~~l~~~a~Gs~~~a 218 (314)
T PRK07399 153 --------NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L----NINFPELLALAQGSPGAA 218 (314)
T ss_pred --------CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c----hhHHHHHHHHcCCCHHHH
Confidence 23344455554444333 34467899999999999999998653221 0 111357889999999766
Q ss_pred HHH
Q 002606 373 ITI 375 (901)
Q Consensus 373 ~~~ 375 (901)
..+
T Consensus 219 l~~ 221 (314)
T PRK07399 219 IAN 221 (314)
T ss_pred HHH
Confidence 543
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.48 E-value=0.0097 Score=72.21 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.++.+++|.+++.. ...+++.++|++|+|||++|+.+.+..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999887642 234589999999999999999999887
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.004 Score=66.87 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=58.6
Q ss_pred CceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh-HHHhh-hcCCccEEecCCC
Q 002606 256 KKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE-EVCGW-MEAHQNFKVACLS 331 (901)
Q Consensus 256 kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~ 331 (901)
++-++|+|++... .....+...+.... .++.+|+||.+. .+... .+....+.+.+++
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-------------------~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPS-------------------GDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCC-------------------CCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 3445577999653 33444444443322 456666666655 34322 3446789999999
Q ss_pred hHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 332 HNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 332 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
.+++.+.+.+...... .+.+..++..++|.|..+..+
T Consensus 167 ~~~~~~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 167 NEESLQWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 9999999887642111 223567789999999866544
No 165
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=3.2e-05 Score=79.30 Aligned_cols=237 Identities=18% Similarity=0.067 Sum_probs=132.6
Q ss_pred cccccEEEEeecCcccc-----c-ccCCCCCCccEEEecCCc----ccccCc------hHHhcCCCCCEEEccCCCcccc
Q 002606 529 EWEKVRRLSLMENQIKV-----I-LGMPRCPHLLTLFLNNNV----KLRISD------GFLQYMSSLKVLSLSHNEVLFE 592 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~----~~~~~~------~~~~~l~~L~~L~L~~~~~~~~ 592 (901)
....+..+++++|.+-. + +.+.+.+.|+..++++-. ...+|+ ..+-++++|++||||.|.+-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34567777777776522 1 224455567777665431 122222 1244567888888888744333
Q ss_pred Ccc----cccCCCCCCEEeccCCCCcccc--------------hhhhccccccccccccccCcCCCCcc----ccCCCcc
Q 002606 593 LPS----DISRLVSLELLDLSNSRIRELP--------------EELAALVNLKCLNLEYTFDLAKIPWN----LISNFSR 650 (901)
Q Consensus 593 lp~----~i~~l~~L~~L~l~~~~i~~lp--------------~~i~~l~~L~~L~L~~~~~l~~lp~~----~i~~l~~ 650 (901)
-+. -+..+..|++|.|.+|++...- +-+.+-++|+.+....| .+..-+.. .+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccc
Confidence 332 3455777888888887765221 11344567888877776 45554422 2456678
Q ss_pred cceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhh--hhcccccccccceeEecccCCCccccc----
Q 002606 651 LHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKS--FLTSHQLRSCTQALLLHCFKDSSLDVS---- 724 (901)
Q Consensus 651 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~--~~~~~~l~~~l~~L~l~~~~~~~~~~~---- 724 (901)
|+.+.++.|.+.... .......+..+++|+.|+++.|..+.-.. +.......++++.+++++|..+.-...
T Consensus 187 leevr~~qN~I~~eG---~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEG---VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cceEEEecccccCch---hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 888888877664321 23456677788888888888766533211 112222334777888887765322111
Q ss_pred -CccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCC
Q 002606 725 -GLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCI 771 (901)
Q Consensus 725 -~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~ 771 (901)
.-...|+|+.|.+.+|..-.+-... .. ......+.|..|.|++|.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~-la-~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALA-LA-ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHH-HH-HHHhcchhhHHhcCCccc
Confidence 1123678888888877422110000 00 001126788889998875
No 166
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0021 Score=71.20 Aligned_cols=165 Identities=20% Similarity=0.155 Sum_probs=96.9
Q ss_pred chhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc
Q 002606 157 GQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT 236 (901)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 236 (901)
.|..-..++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++...+......-+.+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~~--------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDLL--------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHHH---------
Confidence 344455566665554433 99999999999999997776655 222 45554332211111111111
Q ss_pred cccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHH
Q 002606 237 WKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVC 316 (901)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~ 316 (901)
..+.+.-..++..++||.|....+|+.....+.+.. +. +|++|+-+..+.
T Consensus 85 ----------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~-------------------~~-~v~itgsss~ll 134 (398)
T COG1373 85 ----------RAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRG-------------------NL-DVLITGSSSSLL 134 (398)
T ss_pred ----------HHHHHhhccCCceEEEecccCchhHHHHHHHHHccc-------------------cc-eEEEECCchhhh
Confidence 111111112778999999999999999877777654 44 888888776542
Q ss_pred -----hh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 317 -----GW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 317 -----~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
.. .+....+++-|||..|...+-. .. ...... +..-.-.-.+||.|-++..
T Consensus 135 ~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~-----~~-~~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 135 SKEISESLAGRGKDLELYPLSFREFLKLKG-----EE-IEPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred ccchhhhcCCCceeEEECCCCHHHHHhhcc-----cc-cchhHH-HHHHHHHHHhCCCcHHHhC
Confidence 22 2335678999999999887643 10 000111 1122233346888887754
No 167
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.43 E-value=0.0012 Score=74.27 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=87.8
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccc--CCCCCeEEEEEeCCcCC
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQS--STDFDFVIWVVVSKDLQ 218 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~~~~~~ 218 (901)
++.|.+..++++.+.+.. ...+-+.++|++|+|||++|+.+++..... ...+....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 467899999988887631 134568999999999999999999987210 001223444444331
Q ss_pred HHHHHHHHHHHhCCCccccccccHHHHHHHHHHH-HccCceEEEecccccccccccccccCCCCCCCccccc---ccCCC
Q 002606 219 IEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI-LKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKV---KVGDP 294 (901)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 294 (901)
++ +...... ............++. -.+++++|+||+++.-..-. ..+........ ..-..
T Consensus 261 --eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R------~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 261 --EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTR------GSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred --hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhccc------CCCccchHHHHHHHHHHHH
Confidence 11 1110000 001111122222221 13478999999996421000 00000000000 00000
Q ss_pred CCCCCCCCCcEEEEecCChHHH-----hhhcCCccEEecCCChHHHHHHHHHHhcC
Q 002606 295 LPSPEKSSESKVVFTTRSEEVC-----GWMEAHQNFKVACLSHNDAWELFQQKVGE 345 (901)
Q Consensus 295 ~~~~~~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 345 (901)
+.......+..||.||...+.. .....+..|++...+.++..++|+.+...
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 0111111344556666544331 11123456899999999999999988753
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00011 Score=73.69 Aligned_cols=223 Identities=16% Similarity=0.118 Sum_probs=118.4
Q ss_pred CccEEEecCCcccccC--chHHhcCCCCCEEEccCCCccc---cCcccccCCCCCCEEeccCCCCc----ccchhhhccc
Q 002606 554 HLLTLFLNNNVKLRIS--DGFLQYMSSLKVLSLSHNEVLF---ELPSDISRLVSLELLDLSNSRIR----ELPEELAALV 624 (901)
Q Consensus 554 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~---~lp~~i~~l~~L~~L~l~~~~i~----~lp~~i~~l~ 624 (901)
.+..|.+.++.+.... ..+-..++.++.|||.+| .+. ++-..+.+|++|++|+++.|.+. ++| ..+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 3445566666554433 233456889999999999 443 23445678999999999998765 444 3567
Q ss_pred cccccccccccCcCCCCccccCCCcccceeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEeccccchhhhhccccc
Q 002606 625 NLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLRSSHALKSFLTSHQL 704 (901)
Q Consensus 625 ~L~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~l 704 (901)
+|+.|-|.++..-..-....+..++++++|+++.|+........+ ..+.. -+.+.+|....+....+.........
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~--c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN--CIEDW--STEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc--ccccc--chhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 899999988743222223336788899999999886433222111 00000 11222232222222222222222222
Q ss_pred ccccceeEecccCCCccc-ccCccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCCCCCCCch-----
Q 002606 705 RSCTQALLLHCFKDSSLD-VSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCIGLKDLTF----- 778 (901)
Q Consensus 705 ~~~l~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~----- 778 (901)
..++..+.+..++..+.. ..+...++.+.-|.++.. ++. +|-.......|+.|+.|.+.+.+.+..+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~id----swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NID----SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccc----cHHHHHHHcCCchhheeeccCCcccccccCCcceE
Confidence 224444445445442221 123444555555555543 222 122112223577777777777765554432
Q ss_pred --hhccCCccEEE
Q 002606 779 --LVFASNLKSIE 789 (901)
Q Consensus 779 --l~~l~~L~~L~ 789 (901)
++.+++++.|+
T Consensus 273 llIaRL~~v~vLN 285 (418)
T KOG2982|consen 273 LLIARLTKVQVLN 285 (418)
T ss_pred EEEeeccceEEec
Confidence 35667777664
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.39 E-value=0.0027 Score=73.02 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=92.1
Q ss_pred cccchhHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 154 TVVGQQSQLEQVWKCLV---E---------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----HH
Confidence 57888877666655432 1 123458899999999999999998876 2222 22221 11
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccc-cCCCCCCCCC
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVK-VGDPLPSPEK 300 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (901)
+.. .. .......+...+.......+.+|++||++.-..-..-. +..........+. .-..+.....
T Consensus 124 ~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~--~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 124 FVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccC--cCCccHHHHHHHHHHHhhhccccC
Confidence 111 11 01111222222333344567899999995421000000 0000000000000 0000000011
Q ss_pred CCCcEEEEecCChHH-----HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 301 SSESKVVFTTRSEEV-----CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 301 ~~gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
..+..||.||...+. .........+.+...+.++-.++|+..+.........+ ...+++.+.|.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVD----LKAVARRTPGF 259 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchh----HHHHHHhCCCC
Confidence 134556666655432 11112346788999999999999988775443221112 35777887774
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.39 E-value=0.0024 Score=76.01 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=39.4
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||+++++++++.|......-+.++|++|+|||++|+.++...
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999987655566789999999999999998775
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=0.00011 Score=86.37 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=52.9
Q ss_pred CCccEEEecCCcc--cccCchHHhcCCCCCEEEccCCCccc-cCcccccCCCCCCEEeccCCCCcccchhhhcccccccc
Q 002606 553 PHLLTLFLNNNVK--LRISDGFLQYMSSLKVLSLSHNEVLF-ELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCL 629 (901)
Q Consensus 553 ~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 629 (901)
.+|+.|++++... ...+...-..+|.|+.|.+++-.... +.-.-..++++|..||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4566666655421 12222323346666666666642211 1222334556666667776666666 566666666666
Q ss_pred ccccccCcCCCCc-cccCCCcccceeeccc
Q 002606 630 NLEYTFDLAKIPW-NLISNFSRLHVLRMFG 658 (901)
Q Consensus 630 ~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~ 658 (901)
.+.+= .+..-+. ..+-+|++|++||++.
T Consensus 201 ~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNL-EFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCC-CCCchhhHHHHhcccCCCeeeccc
Confidence 66542 1111110 0134566666666665
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.30 E-value=0.0026 Score=77.57 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=40.6
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||+.++.++++.|......-+.++|.+|+|||++|+.+....
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999988766677799999999999999998876
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0012 Score=71.52 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=87.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC--eEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD--FVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
....+.|||..|.|||.|++.+.+.. ..... .++++ +.+.....++..+.. ...+.++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36799999999999999999999988 33333 34444 233444444443321 1233455
Q ss_pred HHHccCceEEEeccccccc---cc-ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCCh---------HHHh
Q 002606 251 RILKKKKFVLLLDDIWQRV---DL-VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSE---------EVCG 317 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~---------~v~~ 317 (901)
+.. .-=++++||++--. .| +.+...+..-. ..|..||+|++.. .+.+
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~------------------~~~kqIvltsdr~P~~l~~~~~rL~S 231 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL------------------ENGKQIVLTSDRPPKELNGLEDRLRS 231 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH------------------hcCCEEEEEcCCCchhhccccHHHHH
Confidence 555 33388999995421 11 12222221100 0455899998643 3456
Q ss_pred hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChh
Q 002606 318 WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPE 353 (901)
Q Consensus 318 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 353 (901)
.+...-++++.+.+.+.....+.+++.......+++
T Consensus 232 R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~e 267 (408)
T COG0593 232 RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDE 267 (408)
T ss_pred HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHH
Confidence 667778999999999999999999876655444443
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.0011 Score=76.84 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=39.1
Q ss_pred CcccchhHHHHHHHHHHhcC-----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEG-----SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+++|-++.++++..++... ..+++.|+|+.|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998752 34579999999999999999998776
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=97.26 E-value=0.00017 Score=69.47 Aligned_cols=36 Identities=33% Similarity=0.555 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEE
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIW 210 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 210 (901)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987222256777776
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.25 E-value=0.0018 Score=65.49 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEE
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWV 211 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 211 (901)
.+.++......++.++.+. .+|.+.|.+|+|||+||..+..+.. ..+.|+.++.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~ 110 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVT 110 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEe
Confidence 3577888888888888764 4999999999999999999888641 12445544443
No 177
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.25 E-value=0.0017 Score=79.49 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=40.2
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||+.++.++++.|......-+.++|++|+|||++|+.+..+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999987666677799999999999999998876
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00019 Score=84.25 Aligned_cols=128 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred cccEEEEeecCccc--cccc--CCCCCCccEEEecCCccccc-CchHHhcCCCCCEEEccCCCccccCcccccCCCCCCE
Q 002606 531 EKVRRLSLMENQIK--VILG--MPRCPHLLTLFLNNNVKLRI-SDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLEL 605 (901)
Q Consensus 531 ~~lr~l~l~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~ 605 (901)
.++++|++.+...- ..+. ...+|.|++|.+.+-.+..- ......++++|+.||+|++ .+..+ ..+++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 58999999875432 1111 24689999999987654222 1233568999999999999 67777 69999999999
Q ss_pred EeccCCCCcccc--hhhhccccccccccccccCcCCCCccc------cCCCcccceeecccccc
Q 002606 606 LDLSNSRIRELP--EELAALVNLKCLNLEYTFDLAKIPWNL------ISNFSRLHVLRMFGNAI 661 (901)
Q Consensus 606 L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~~------i~~l~~L~~L~l~~n~~ 661 (901)
|.+++-.+..-+ ..+.+|++|++||+|...... -+.-+ -..|++||.|+.+++.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 999887666432 457899999999999864322 22100 13578888888886543
No 179
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0019 Score=68.98 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCe-EEEEEeCCc-CCHHHHHHHHHHHhCCCcccc
Q 002606 161 QLEQVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDF-VIWVVVSKD-LQIEKIQESIGEKIGLLNDTW 237 (901)
Q Consensus 161 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~ 237 (901)
...++++.+.. +.-..+.|+|..|+|||||++.+.+... ..+-+. ++|+.+.+. ..+.++.+.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34557887764 4446779999999999999999988772 222233 467676665 467888888887765432110
Q ss_pred cc---ccHHHHHHHHHHHH--ccCceEEEecccc
Q 002606 238 KN---RRIEQKALDIFRIL--KKKKFVLLLDDIW 266 (901)
Q Consensus 238 ~~---~~~~~~~~~l~~~l--~~kr~LlVlDdv~ 266 (901)
.. ......+..+.+++ ++++++||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 10 01111122222222 5899999999984
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.23 E-value=0.00047 Score=71.91 Aligned_cols=74 Identities=27% Similarity=0.295 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
.-+.++|..|+|||+||..+++... .....+++++ ..+++..|........ ..+. ..+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~----~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KEDE----NEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----cccH----HHHHHHhc
Confidence 4588999999999999999999982 2234456664 3445555555442211 1111 22334455
Q ss_pred cCceEEEecccc
Q 002606 255 KKKFVLLLDDIW 266 (901)
Q Consensus 255 ~kr~LlVlDdv~ 266 (901)
+-. ||||||+.
T Consensus 178 ~~d-lLviDDlg 188 (268)
T PRK08116 178 NAD-LLILDDLG 188 (268)
T ss_pred CCC-EEEEeccc
Confidence 444 89999994
No 181
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00097 Score=67.09 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV 213 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (901)
-.++|+|..|+||||++..+.... ...|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999998877 678888877754
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.18 E-value=0.004 Score=72.70 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=93.6
Q ss_pred CcccchhHHHHHHHHH---HhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 153 PTVVGQQSQLEQVWKC---LVEG---------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
.++.|.++.++++.+. +... ..+-|.++|++|+|||++|+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 3578887766655444 3321 23468999999999999999998876 222 2332211
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCccccc-ccCCCCCCCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKV-KVGDPLPSPE 299 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 299 (901)
++.... .+ .........+.......+++|++||++.-..-. +.............+ .....+....
T Consensus 251 ~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r--~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 251 EFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQR--GAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcc--cCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 111100 00 111122223334445688999999995321000 000000000000000 0000000001
Q ss_pred CCCCcEEEEecCChHHHh-hh----cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCC
Q 002606 300 KSSESKVVFTTRSEEVCG-WM----EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGG 367 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 367 (901)
...+..||.||...+... .+ .....+.+...+.++-.++++.++...... + ......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS--P--DVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc--h--hHHHHHHHhcCCC
Confidence 114556777776644321 11 234678899999999999999887653211 1 2235677778777
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.0012 Score=61.62 Aligned_cols=88 Identities=24% Similarity=0.132 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL 253 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (901)
...+.|+|++|+||||+|+.+.... ......++++..+........... ........ ...........+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHH
Confidence 3578999999999999999998887 222234555554443222221111 00010000 1122223333444444
Q ss_pred ccCc-eEEEecccccc
Q 002606 254 KKKK-FVLLLDDIWQR 268 (901)
Q Consensus 254 ~~kr-~LlVlDdv~~~ 268 (901)
+..+ .+|++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 4444 89999999764
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0059 Score=67.54 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 154 TVVGQQSQLEQVWKCLVE------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
++=|.++.++++.+++.. ...+=|.++|++|.|||.||+.++++. . +-++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch-----
Confidence 456888888888877642 245678899999999999999999988 2 223333322
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEeccccc
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
+|+... .+.+++.+.+.+.+.-..-++++++|+++.
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 334444444444555667899999999953
No 185
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.14 E-value=0.025 Score=61.25 Aligned_cols=200 Identities=17% Similarity=0.214 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHH-HHHHhhhcccCCCCCeEEEEEeCCc---CCHHHHHHHHHHHhCCC
Q 002606 158 QQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLL-THINNKFLQSSTDFDFVIWVVVSKD---LQIEKIQESIGEKIGLL 233 (901)
Q Consensus 158 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 233 (901)
|.+.+++|..||.+..-.+|.|.|+-|+||+.|+ .++..+. + .+..+.+.+- .+-..+...++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 7776554 1 1555554321 22334455555554321
Q ss_pred -----------------------ccccccccHHHHHHHH-------HH-------------------HHc---cCceEEE
Q 002606 234 -----------------------NDTWKNRRIEQKALDI-------FR-------------------ILK---KKKFVLL 261 (901)
Q Consensus 234 -----------------------~~~~~~~~~~~~~~~l-------~~-------------------~l~---~kr~LlV 261 (901)
...+.+....++...+ ++ +|+ .+|=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1111222222222211 11 011 1256899
Q ss_pred eccccccc-----------ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHh----hh--cCCcc
Q 002606 262 LDDIWQRV-----------DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCG----WM--EAHQN 324 (901)
Q Consensus 262 lDdv~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~----~~--~~~~~ 324 (901)
+|+.-... +|... + ..++--.||++|-+..... .+ .....
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--------------------v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~t 210 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--------------------VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKT 210 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--------------------HhcCccEEEEECCCCchhhhHHHhCCCCceeE
Confidence 99984321 23221 1 1114567888887765433 22 23467
Q ss_pred EEecCCChHHHHHHHHHHhcCCccC------------CC-----hhHHHHHHHHHHHcCCChhHHHHHHHHhccCCChHH
Q 002606 325 FKVACLSHNDAWELFQQKVGEETLN------------CH-----PEILELARTVAKECGGLPLALITIGRAMACKKRPEE 387 (901)
Q Consensus 325 ~~l~~L~~~ea~~Lf~~~~~~~~~~------------~~-----~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~~~~~ 387 (901)
+.|...+.+.|.++...+....... .. ....+-....++..||--.-+..+++.++...++++
T Consensus 211 I~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 211 ISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred EeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 8999999999999999987643100 00 123344567788899999999999999988766543
No 186
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.043 Score=62.53 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=90.4
Q ss_pred cccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIG 227 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 227 (901)
+=+|.++.+++|++.|.- -..+++.++|++|+|||+|++.+++-. ...| +-+.++.--|..++-..=-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccccc
Confidence 348999999999999863 245799999999999999999999887 4444 2234444444433321111
Q ss_pred HHhCCCccccccccHHHHHHHHHHHHccCceEEEeccccccc---------ccccccccCCCCCCCcccccccCCCCCCC
Q 002606 228 EKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV---------DLVKVGVPLPSPQKSSESKVKVGDPLPSP 298 (901)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (901)
..+|. =+...+.. ....+.+.=+++||.++... .+-++..+ ..+....++..--++
T Consensus 398 TYIGa--------mPGrIiQ~-mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDP--EQN~~F~DhYLev~y---- 462 (782)
T COG0466 398 TYIGA--------MPGKIIQG-MKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDP--EQNNTFSDHYLEVPY---- 462 (782)
T ss_pred ccccc--------CChHHHHH-HHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCH--hhcCchhhccccCcc----
Confidence 11110 01111111 11223466699999985321 11111111 111111111111111
Q ss_pred CCCCCcEEEE--ecCChH-H-HhhhcCCccEEecCCChHHHHHHHHHHh
Q 002606 299 EKSSESKVVF--TTRSEE-V-CGWMEAHQNFKVACLSHNDAWELFQQKV 343 (901)
Q Consensus 299 ~~~~gs~iii--TtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 343 (901)
.=|.|++ |..+-+ + +..++.-.+|++.+-+++|=.+.-+++.
T Consensus 463 ---DLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 463 ---DLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ---chhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2255543 333322 2 2334555789999999999888877765
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.014 Score=62.20 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-----eEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 002606 160 SQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-----FVIWVVVSKDLQIEKIQESIGEKIGLL 233 (901)
Q Consensus 160 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-----~~~wv~~~~~~~~~~~~~~i~~~l~~~ 233 (901)
...+.+...+..++.+ .+.++|+.|+||+++|..+.....- ..... ++-|+..+..+|+..+. ..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 4466777777776544 6889999999999999988876521 11000 00011111111110000 000
Q ss_pred cc-c---cccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 234 ND-T---WKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 234 ~~-~---~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
.. . ......++ +..+.+.+ .+++=++|+|++... ..-..+...+..-. .
T Consensus 83 ~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------------~ 142 (319)
T PRK08769 83 NRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-------------------P 142 (319)
T ss_pred CcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-------------------C
Confidence 00 0 00011222 11222322 245568999999653 22233333333222 4
Q ss_pred CcEEEEecCC-hHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 303 ESKVVFTTRS-EEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 303 gs~iiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
++.+|++|.+ ..+... .+....+.+.+++.+++.+.+.+. +. + .+.+..++..++|.|+.+..+.
T Consensus 143 ~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 143 GRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 5666666654 444333 344678899999999999888753 11 1 1236678999999998765443
No 188
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.10 E-value=0.014 Score=70.25 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=39.4
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.+....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999988863 245689999999999999999998876
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.0076 Score=57.72 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHHhcCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 157 GQQSQLEQVWKCLVEGSAG-IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|-++..+.+.+.+..+..+ .+.++|+.|+||+++|..+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5567778888888877654 68999999999999999988766
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.015 Score=62.90 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=36.2
Q ss_pred cccc-hhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVG-QQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++| -+..++.+.+.+..++. ....++|+.|+||||+|+.+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3567 66777888888877654 466899999999999999987765
No 191
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.03 E-value=0.0015 Score=60.22 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|.|+|+.|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999987
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.01 Score=64.53 Aligned_cols=174 Identities=20% Similarity=0.198 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
+...+.+.|++|+|||+||..++.. ..|+.+--++..+- .|.+ +..........+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-------------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-------------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-------------cCcc----HHHHHHHHHHHHHHh
Confidence 4556788999999999999999655 47876655532211 1111 011111222223334
Q ss_pred HccCceEEEecccccccccccccccCCCCCCCcc-cccccCCCCCCCCCCCCcEEEEecCChHHHhhhcC----CccEEe
Q 002606 253 LKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSE-SKVKVGDPLPSPEKSSESKVVFTTRSEEVCGWMEA----HQNFKV 327 (901)
Q Consensus 253 l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~~~----~~~~~l 327 (901)
-+..--.||+||+..--+|..++..+.+.- ++ ..+... ..++.++.--|+-||....+...|+- ...|.+
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~v--lQaL~VllK---~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLV--LQALLVLLK---KQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHH--HHHHHHHhc---cCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 455667999999977777877766543211 00 000000 01112223334447777788777753 457899
Q ss_pred cCCCh-HHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHh
Q 002606 328 ACLSH-NDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAM 379 (901)
Q Consensus 328 ~~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l 379 (901)
+.++. ++..+.++..-. ..+.+.+.++++.+.+| +-.+|+.+-..+
T Consensus 670 pnl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred CccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 99988 778887775431 12344566777777777 333444444333
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0044 Score=64.41 Aligned_cols=181 Identities=16% Similarity=0.233 Sum_probs=105.5
Q ss_pred ccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 155 VVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
+=|-++.+++|.+...- +..+=|.++|++|+|||-||++|+++. ... |+.+... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH----H
Confidence 45788888888887642 356778999999999999999999987 333 3444332 2
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHHc-cCceEEEeccccccc----------------ccccccccCCCCCCC
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRILK-KKKFVLLLDDIWQRV----------------DLVKVGVPLPSPQKS 284 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------------~~~~~~~~~~~~~~~ 284 (901)
+.+.- +| ....++..+++.-+ ..+.+|.+|.++... .+.++...+....
T Consensus 221 lVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-- 286 (406)
T COG1222 221 LVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-- 286 (406)
T ss_pred HHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC--
Confidence 21111 11 11223344444443 468999999985310 1111111111111
Q ss_pred cccccccCCCCCCCCCCCCcEEEEecCChHH-----HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHH
Q 002606 285 SESKVKVGDPLPSPEKSSESKVVFTTRSEEV-----CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELAR 359 (901)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 359 (901)
....-|||..|...++ .....-+..|++..-+.+-=.+.|+-++.......+-++ +
T Consensus 287 ---------------~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e 347 (406)
T COG1222 287 ---------------PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----E 347 (406)
T ss_pred ---------------CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----H
Confidence 1145789988766554 222234567888866666666788878776654444454 4
Q ss_pred HHHHHcCCCh----hHHHHHHHHhc
Q 002606 360 TVAKECGGLP----LALITIGRAMA 380 (901)
Q Consensus 360 ~i~~~c~GlP----Lai~~~g~~l~ 380 (901)
.+++.|.|.- -|+.+=|++++
T Consensus 348 ~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 348 LLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred HHHHhcCCCchHHHHHHHHHHhHHH
Confidence 5556666553 34555566554
No 194
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0024 Score=61.83 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEE
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIW 210 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~w 210 (901)
.|.|+|++|+||||||+.+.....-..-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998765111124455555
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.018 Score=61.66 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV 213 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (901)
..-+.++|..|+|||+||..+++... ..-..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 36799999999999999999999872 22235677654
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.036 Score=59.15 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC-C--C----CCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 160 SQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS-T--D----FDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 160 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~----F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
...+.+.+.+..+.. ..+.+.|+.|+||+++|+.+.....-.. . . .+.+-++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------- 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------
Confidence 345667777776654 5677899999999999999887652100 0 0 0000011111111111000
Q ss_pred CCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCc
Q 002606 232 LLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSES 304 (901)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 304 (901)
...-.....++.. .+.+.+ .+++=++|+|++... .....+...+.... .++
T Consensus 81 --p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------------------~~~ 138 (325)
T PRK06871 81 --PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-------------------PNT 138 (325)
T ss_pred --cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCC-------------------CCe
Confidence 0000011222222 222332 245558889999653 23344444443332 456
Q ss_pred EEEEecCCh-HHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 305 KVVFTTRSE-EVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 305 ~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
.+|++|.+. .+... .+....+.+.+++++++.+.+.+..... . ..+...+..++|.|..+
T Consensus 139 ~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~-----~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 139 YFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE-----I---SEILTALRINYGRPLLA 200 (325)
T ss_pred EEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC-----h---HHHHHHHHHcCCCHHHH
Confidence 666666554 44433 3446789999999999999888764321 1 12567788999999644
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0011 Score=63.19 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=58.2
Q ss_pred CCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhh-ccccccccccccccCcCC---CCccccCCCcccc
Q 002606 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELA-ALVNLKCLNLEYTFDLAK---IPWNLISNFSRLH 652 (901)
Q Consensus 577 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~---lp~~~i~~l~~L~ 652 (901)
...-.+||++| .+..++ .+..+..|.+|.+++|.|+.+-..+. .+++|+.|.+.+| .+.+ +.+ +..|++|+
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLE 116 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCccc
Confidence 34455666666 344443 45556666666666666666643433 3445666666665 2332 222 45667777
Q ss_pred eeecccccccCCCCCCchhhHHhhcCCCCCcEEEEEec
Q 002606 653 VLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLSFTLR 690 (901)
Q Consensus 653 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~ 690 (901)
+|.+-+|.++.... ...--+..+++|+.|++...
T Consensus 117 ~Ltll~Npv~~k~~----YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKN----YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccC----ceeEEEEecCcceEeehhhh
Confidence 77777766543211 12334556777887777643
No 198
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=0.00022 Score=63.21 Aligned_cols=88 Identities=28% Similarity=0.365 Sum_probs=77.5
Q ss_pred cccEEEEeecCccccccc--CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEec
Q 002606 531 EKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDL 608 (901)
Q Consensus 531 ~~lr~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l 608 (901)
..+..+++++|.+..+|. ...++.+++|++.+|.+..+|.. +..++.|+.|+++.| .+...|.-|..|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 357778999999988876 35677999999999999999998 889999999999999 77888988888999999999
Q ss_pred cCCCCcccchhh
Q 002606 609 SNSRIRELPEEL 620 (901)
Q Consensus 609 ~~~~i~~lp~~i 620 (901)
.+|.+.++|-.+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999988888763
No 199
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.031 Score=62.58 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..+|+|+|++|+||||++.++.... ..+.....+..++... .....+.+....+.++.... ...+..++...+ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-ER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-HH
Confidence 4799999999999999999988765 2222223455555432 11222333333344443321 112233333333 33
Q ss_pred HccCceEEEeccc
Q 002606 253 LKKKKFVLLLDDI 265 (901)
Q Consensus 253 l~~kr~LlVlDdv 265 (901)
+.+ .=+||+|..
T Consensus 426 l~~-~DLVLIDTa 437 (559)
T PRK12727 426 LRD-YKLVLIDTA 437 (559)
T ss_pred hcc-CCEEEecCC
Confidence 443 448888887
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.84 E-value=0.0055 Score=60.55 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTW-KNRRIEQKALDIFR 251 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 251 (901)
++||.++|+.|+||||.+.+++... ..+ -..+..++.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999888887 322 445677775432 355677788888888653211 12234444444444
Q ss_pred HHccCc-eEEEeccc
Q 002606 252 ILKKKK-FVLLLDDI 265 (901)
Q Consensus 252 ~l~~kr-~LlVlDdv 265 (901)
..+.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444444 37777765
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.046 Score=58.17 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccC------------------CCCCeEEEEEeCCcCCHH
Q 002606 160 SQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSS------------------TDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 160 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~~~~~~~~ 220 (901)
...+++.+.+..++. ..+-+.|+.|+||+++|+.+.....-.. .|-| ..|+.....
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC----
Confidence 345666776666654 4788999999999999999877652100 1111 122211000
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGD 293 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (901)
-.....++.. .+.+.+ .+++=++|+|++... .....+...+....
T Consensus 85 ----------------~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp----------- 136 (319)
T PRK06090 85 ----------------GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA----------- 136 (319)
T ss_pred ----------------CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-----------
Confidence 0011222221 222332 234458889998643 33444444443322
Q ss_pred CCCCCCCCCCcEEEEecCC-hHHHh-hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhH
Q 002606 294 PLPSPEKSSESKVVFTTRS-EEVCG-WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLA 371 (901)
Q Consensus 294 ~~~~~~~~~gs~iiiTtR~-~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 371 (901)
.++.+|++|.+ ..+.. ..+....+.+.+++.+++.+.+..... + .+..+++.++|.|+.
T Consensus 137 --------~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 137 --------PNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLK 197 (319)
T ss_pred --------CCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHH
Confidence 45666655554 44443 334567899999999999998875311 1 135678999999997
Q ss_pred HHHH
Q 002606 372 LITI 375 (901)
Q Consensus 372 i~~~ 375 (901)
+..+
T Consensus 198 A~~~ 201 (319)
T PRK06090 198 TLAM 201 (319)
T ss_pred HHHH
Confidence 7554
No 202
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0061 Score=68.27 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSA-GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
+++||-+...+.|...+..++. .-....|+-|+||||+|+.++...- -.. + ....+...-..-+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 3579999999999999987653 3456789999999999999887651 110 0 11111111122222222100
Q ss_pred CCc---cccccccHHHHHHHHHHHH-----ccCceEEEeccccc--ccccccccccCCCCCCCcccccccCCCCCCCCCC
Q 002606 232 LLN---DTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQ--RVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKS 301 (901)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (901)
... +.......++ +..+.+.. +++-=+.|+|+|.- ...|..+...+....
T Consensus 88 ~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP------------------- 147 (515)
T COG2812 88 IDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP------------------- 147 (515)
T ss_pred ccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-------------------
Confidence 000 0001111111 12222222 23444889999953 355666655554333
Q ss_pred CCcEEEEecCC-hHHH-hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChh
Q 002606 302 SESKVVFTTRS-EEVC-GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPL 370 (901)
Q Consensus 302 ~gs~iiiTtR~-~~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 370 (901)
...+.|+.|++ +.+. ...+..+.|.++.++.++-...+...+..+....++ +....|++..+|..-
T Consensus 148 ~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~---~aL~~ia~~a~Gs~R 215 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEE---DALSLIARAAEGSLR 215 (515)
T ss_pred cCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCChh
Confidence 45565655544 4442 334556889999999999999999988776644443 345666666666543
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.013 Score=71.03 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++.|.++.++++.+.+.. ...+-|.++|++|+|||+||+.+++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 478999999888877631 234578899999999999999998876
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.061 Score=63.05 Aligned_cols=104 Identities=25% Similarity=0.379 Sum_probs=63.9
Q ss_pred CcccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE---------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
..++|-+..++.+.+.+.. .+..+....|+.|+|||-||+.++... .+.=+..+-+..|.-.. -
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~E----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYME----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHH----H
Confidence 3579999999999998863 134577789999999999999998877 22113344443333211 1
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHHccCce-EEEeccccc
Q 002606 224 ESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKF-VLLLDDIWQ 267 (901)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~ 267 (901)
.++.+-+|.+.. +-+- ++ --.+-+.+++++| +|.||+|..
T Consensus 564 HsVSrLIGaPPG-YVGy--ee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 564 HSVSRLIGAPPG-YVGY--EE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHhCCCCC-Ccee--cc-ccchhHhhhcCCCeEEEechhhh
Confidence 233333444332 1111 11 1235667778888 888999954
No 205
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.73 E-value=0.0058 Score=59.35 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=41.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++||-++.++++.-...++..+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3689999999999888888999999999999999999888887776
No 206
>PRK12377 putative replication protein; Provisional
Probab=96.72 E-value=0.0082 Score=61.46 Aligned_cols=74 Identities=27% Similarity=0.288 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
+...+.++|..|+|||+||..+.+... .....++++++. ++...|...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999882 233345666543 455555443311 11111 22333
Q ss_pred HccCceEEEecccc
Q 002606 253 LKKKKFVLLLDDIW 266 (901)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (901)
+ .+-=|||+||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345599999994
No 207
>PRK08181 transposase; Validated
Probab=96.71 E-value=0.0022 Score=66.47 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=45.9
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHH
Q 002606 167 KCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKA 246 (901)
Q Consensus 167 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 246 (901)
+|+.. ..-+.++|++|+|||.||..+.+... .....+.|+++ .+++..+..... ..+...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~-- 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR-------ELQLES-- 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh-------CCcHHH--
Confidence 45543 34589999999999999999988762 22334566643 455555543221 112222
Q ss_pred HHHHHHHccCceEEEecccc
Q 002606 247 LDIFRILKKKKFVLLLDDIW 266 (901)
Q Consensus 247 ~~l~~~l~~kr~LlVlDdv~ 266 (901)
..+.+. +-=|||+||+.
T Consensus 161 --~l~~l~-~~dLLIIDDlg 177 (269)
T PRK08181 161 --AIAKLD-KFDLLILDDLA 177 (269)
T ss_pred --HHHHHh-cCCEEEEeccc
Confidence 222232 33499999994
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.71 E-value=0.023 Score=68.76 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=93.6
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
++.|.+..++.+.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888887777666531 134468889999999999999999886 3333 222211
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCC--CCcccccccCCCCCCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQ--KSSESKVKVGDPLPSP 298 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 298 (901)
++ .... -+.+...+...+...-+..+.+|++|+++.-..-. +....... .-....+.. +...
T Consensus 522 ~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r--~~~~~~~~~~~~~~~lL~~---ldg~ 585 (733)
T TIGR01243 522 EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR--GARFDTSVTDRIVNQLLTE---MDGI 585 (733)
T ss_pred HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccC--CCCCCccHHHHHHHHHHHH---hhcc
Confidence 11 1111 11122222222222334567999999985321000 00000000 000000000 0000
Q ss_pred CCCCCcEEEEecCChHHHh-h-h---cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 299 EKSSESKVVFTTRSEEVCG-W-M---EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 299 ~~~~gs~iiiTtR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
....+..||.||...+... . . .....+.+...+.++-.++|+............+ ...+++.+.|.-
T Consensus 586 ~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 586 QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 1113455666775554321 1 1 2346788999999999999987665443222223 355667777654
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.067 Score=57.70 Aligned_cols=178 Identities=11% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhccc--C-----CCCCeEEEEEeCCcCCHHHHHHHHHHHhC
Q 002606 160 SQLEQVWKCLVEGS-AGIIGLYGMGGVGKTTLLTHINNKFLQS--S-----TDFDFVIWVVVSKDLQIEKIQESIGEKIG 231 (901)
Q Consensus 160 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 231 (901)
..-+++.+.+..++ ..-+.+.|+.|+||+++|..+.....-. . +....+.++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 34567777777765 4577799999999999999987665210 0 000000111111111111000
Q ss_pred CCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCc
Q 002606 232 LLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSES 304 (901)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 304 (901)
... .......++.. .+.+.+ .+++=++|+|++... ..-..+...+.... .++
T Consensus 81 p~~-~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------------~~t 139 (334)
T PRK07993 81 PEK-GKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------------------ENT 139 (334)
T ss_pred ccc-ccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------------------CCe
Confidence 000 00011222222 233333 245568999998643 23334444443322 456
Q ss_pred EEEEecCC-hHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 305 KVVFTTRS-EEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 305 ~iiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
.+|++|.+ ..+... .+..+.+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|..+..
T Consensus 140 ~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 140 WFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred EEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHH
Confidence 66655554 445433 344678899999999999888654321 1 12367889999999975433
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.03 Score=63.11 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
++=|.|+.+.++.+.+.- ...+-|..+|++|.|||++|+.+.+.. +..| +.++.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 444577766666655431 356788999999999999999999987 4455 333222
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccc-------------cccccccCCCCCCCccc
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVD-------------LVKVGVPLPSPQKSSES 287 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~~ 287 (901)
+++.. |-+.++..+.+.+.+.-+--+++|.||.++...- +..+..-+.+.
T Consensus 503 EL~sk-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~------ 565 (693)
T KOG0730|consen 503 ELFSK-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL------ 565 (693)
T ss_pred HHHHH-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc------
Confidence 11111 1122333333333333344668999999854210 00010111100
Q ss_pred ccccCCCCCCCCCCCCcEEEE-ecCChHHH-hhhc---CCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHH
Q 002606 288 KVKVGDPLPSPEKSSESKVVF-TTRSEEVC-GWME---AHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELA 358 (901)
Q Consensus 288 ~~~~~~~~~~~~~~~gs~iii-TtR~~~v~-~~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 358 (901)
...++--||- |-|...+- ..+. .++.+.++.-+.+--.++|+.++........-++++++
T Consensus 566 -----------e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 566 -----------EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred -----------cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 0112222332 44544442 2222 45778888888888899999998776544444554444
No 211
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.62 E-value=0.39 Score=58.91 Aligned_cols=46 Identities=30% Similarity=0.408 Sum_probs=37.4
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------G--SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999988888753 1 12478899999999999999998766
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.58 E-value=0.0082 Score=64.04 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=45.3
Q ss_pred cccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhccc----CCCCCeEEE
Q 002606 154 TVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKFLQS----STDFDFVIW 210 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~w 210 (901)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..... .+.|...-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 689999999999999864 245799999999999999999999887221 234555556
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.57 E-value=0.022 Score=58.84 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCH-HHHHHHHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQI-EKIQESIG 227 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~ 227 (901)
..++|-.++..++-.++.. ++..-|.|+|+.|.|||+|.-.+..+. +..-+..+-|........ ...++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3578998888888888764 566778899999999999998887774 222334455555554433 23556666
Q ss_pred HHhCCCcc--ccccccHHHHHHHHHHHHcc------CceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCC
Q 002606 228 EKIGLLND--TWKNRRIEQKALDIFRILKK------KKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPE 299 (901)
Q Consensus 228 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (901)
+|+..... .....+..+...++.+.|+. -++++|+|.++--..-.. +......=|+.. ..
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r-----------QtllYnlfDisq-s~ 168 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR-----------QTLLYNLFDISQ-SA 168 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh-----------hHHHHHHHHHHh-hc
Confidence 66643211 11233444555666666643 357888888743210000 000000000000 01
Q ss_pred CCCCcEEEEecCChH-------HHhhhcCCccEEecCCChHHHHHHHHHHhc
Q 002606 300 KSSESKVVFTTRSEE-------VCGWMEAHQNFKVACLSHNDAWELFQQKVG 344 (901)
Q Consensus 300 ~~~gs~iiiTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 344 (901)
..+-+-|-+|||-.- |-+.+....++-++.++-++...+++....
T Consensus 169 r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 169 RAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 125577778999653 334444455677788888888888877653
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.56 E-value=0.01 Score=56.25 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...++.++|++|.||||+.+.+|...
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45689999999999999999999887
No 215
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00035 Score=80.79 Aligned_cols=108 Identities=24% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCccEEEecCCc-ccccC-chHHhcCCCCCEEEccCC-CccccC----cccccCCCCCCEEeccCCC-Ccc--cchhhh
Q 002606 552 CPHLLTLFLNNNV-KLRIS-DGFLQYMSSLKVLSLSHN-EVLFEL----PSDISRLVSLELLDLSNSR-IRE--LPEELA 621 (901)
Q Consensus 552 ~~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~-~~~~~l----p~~i~~l~~L~~L~l~~~~-i~~--lp~~i~ 621 (901)
++.|+.|.+.++. +.... ......+++|+.|+++++ ...... +.....+.+|+.|+++++. ++. +..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666665552 22211 223445666666666652 111111 1122334555566665554 331 111111
Q ss_pred ccccccccccccccCcCCCCc-cccCCCcccceeecccc
Q 002606 622 ALVNLKCLNLEYTFDLAKIPW-NLISNFSRLHVLRMFGN 659 (901)
Q Consensus 622 ~l~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~l~~n 659 (901)
.+++|++|.+.+|..++.-.- .+..++++|++|++++|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 245555555555532211110 11234455555555544
No 216
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.55 E-value=0.002 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 217
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.52 E-value=0.024 Score=64.05 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHH---hc-------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 154 TVVGQQSQLEQVWKCL---VE-------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+.+.. .-.| +-+..+ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 5678776666554421 11 234578899999999999999999887 2222 112111 111
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCC-CCC
Q 002606 224 ESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPE-KSS 302 (901)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (901)
... -+.+...+...+...-...+++|++|+++.... .......++......+..+.... ...
T Consensus 297 ----~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~------~~~~~~d~~~~~rvl~~lL~~l~~~~~ 359 (489)
T CHL00195 297 ----GGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFS------NSESKGDSGTTNRVLATFITWLSEKKS 359 (489)
T ss_pred ----ccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc------cccCCCCchHHHHHHHHHHHHHhcCCC
Confidence 000 111112222222222235789999999953210 00000000000000000000000 013
Q ss_pred CcEEEEecCChHH-----HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 303 ESKVVFTTRSEEV-----CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 303 gs~iiiTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
+.-||.||.+.+- ......+..+.+..-+.++-.++|+.+..........+ .....+++.+.|.-
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~GfS 429 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKFS 429 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCCC
Confidence 3445667765532 12112356788998899999999998876532111111 12456666666653
No 218
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00042 Score=68.86 Aligned_cols=58 Identities=29% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCc
Q 002606 553 PHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIR 614 (901)
Q Consensus 553 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~ 614 (901)
.+++-|++.+|.+..+.. ..+|+.|++|.||-| .+..+. .+..|++|+.|.|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccc
Confidence 344455555555444332 334555555555555 333332 3444444444444444443
No 219
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0012 Score=65.60 Aligned_cols=61 Identities=34% Similarity=0.403 Sum_probs=30.4
Q ss_pred hcCCCCCEEEccCC--CccccCcccccCCCCCCEEeccCCCCcccc--hhhhccccccccccccc
Q 002606 574 QYMSSLKVLSLSHN--EVLFELPSDISRLVSLELLDLSNSRIRELP--EELAALVNLKCLNLEYT 634 (901)
Q Consensus 574 ~~l~~L~~L~L~~~--~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~L~~~ 634 (901)
..+++|++|.++.| .....++-....+++|++|++++|+|+-+. ..+..+.+|..|++.+|
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 34555555555555 333334334444466666666666544210 12445555566666555
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00023 Score=70.68 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccchhhhccccccccccccccCcCCCCc-cccCCCcccceee
Q 002606 577 SSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPW-NLISNFSRLHVLR 655 (901)
Q Consensus 577 ~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~~i~~l~~L~~L~ 655 (901)
.+.+.|+..+| .+..+. .+.+|+.|+.|.||-|+|++| ..+..|++|+.|+|..| .+..+.. ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 34444555555 333331 334455555555555555555 33555555555555554 2333332 1134555555555
Q ss_pred ccccc
Q 002606 656 MFGNA 660 (901)
Q Consensus 656 l~~n~ 660 (901)
+..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55443
No 221
>PRK06526 transposase; Provisional
Probab=96.47 E-value=0.0026 Score=65.62 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..-+.++|++|+|||+||..+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999998876
No 222
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.47 E-value=0.027 Score=57.60 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC------CeEEEEEeCCcCCHHHHHHHHHHHhCCCcc-------cccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF------DFVIWVVVSKDLQIEKIQESIGEKIGLLND-------TWKN 239 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 239 (901)
...++.|+|.+|+|||++|.++.... ...- ..++|+.....++...+. .+.+..+.... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45799999999999999999987665 1222 567899887777765554 33333322110 0122
Q ss_pred ccHHHHHHHHHHHHc----cCceEEEecccc
Q 002606 240 RRIEQKALDIFRILK----KKKFVLLLDDIW 266 (901)
Q Consensus 240 ~~~~~~~~~l~~~l~----~kr~LlVlDdv~ 266 (901)
.+.++....+.+... .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 344555555554442 344599999983
No 223
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.031 Score=59.31 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---WKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 249 (901)
..+++-|+|++|+||||||.+++... ...-..++||.....++.. .+++++...+. .+..+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999987766 2334568899877666643 34555543221 1223445555555
Q ss_pred HHHHc-cCceEEEecccc
Q 002606 250 FRILK-KKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l~-~kr~LlVlDdv~ 266 (901)
...++ +..-++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 355689999983
No 224
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.46 E-value=0.052 Score=53.89 Aligned_cols=175 Identities=17% Similarity=0.269 Sum_probs=95.4
Q ss_pred CcccchhHHHHH---HHHHHhcC------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 153 PTVVGQQSQLEQ---VWKCLVEG------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 153 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
+++||.++.+.+ |++.|.+. ..+-|..+|++|.|||-+|+.+.+.. +-.| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka-------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA-------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech-------H
Confidence 357898876544 56666652 46789999999999999999999987 2222 22111 1
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHH-HccCceEEEecccccc----------cccccccccCCCCCCCcccccccC
Q 002606 224 ESIGEKIGLLNDTWKNRRIEQKALDIFRI-LKKKKFVLLLDDIWQR----------VDLVKVGVPLPSPQKSSESKVKVG 292 (901)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 292 (901)
+-|-+..| +....+..+.++ -+.-++++.+|.++.. .+...+..++-.
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLT------------ 244 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLT------------ 244 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH------------
Confidence 11111111 111222223222 2447899999987431 011111111000
Q ss_pred CCCCCCCCCCCcEEEEecCChHHHhh-h--cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 293 DPLPSPEKSSESKVVFTTRSEEVCGW-M--EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 293 ~~~~~~~~~~gs~iiiTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
-+.....+.|...|-.|.+.++... . .....|+..--+++|-.+++...+..-..+.... .+.++++.+|.
T Consensus 245 -elDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 245 -ELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred -hccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 0001112256666766766655322 1 2235677777889999999988876544333323 45566666664
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=96.45 E-value=0.0029 Score=65.76 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+.|+|+.|+|||+||..+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998765
No 226
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.45 E-value=0.059 Score=58.61 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 159 QSQLEQVWKCLVE---GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 159 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+...+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777765 357799999999999999999999888
No 227
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.43 E-value=0.016 Score=59.16 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHH----hCCCccccccccH---HHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEK----IGLLNDTWKNRRI---EQK 245 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~---~~~ 245 (901)
...++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. +..........+. .+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999987762 234678899877 55555443 23322 0000000011122 223
Q ss_pred HHHHHHHHccCceEEEeccc
Q 002606 246 ALDIFRILKKKKFVLLLDDI 265 (901)
Q Consensus 246 ~~~l~~~l~~kr~LlVlDdv 265 (901)
...+.+.++.+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 34444445466779999998
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.43 E-value=0.0034 Score=61.98 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHc
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILK 254 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 254 (901)
.++.|+|..|.||||+|..+..+. . .+...++.+. ..++.......++++++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-E--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999988877 2 2233344442 1112222234456666543322112233444444444 23
Q ss_pred cCceEEEecccc
Q 002606 255 KKKFVLLLDDIW 266 (901)
Q Consensus 255 ~kr~LlVlDdv~ 266 (901)
++.-+||+|.+.
T Consensus 77 ~~~dvviIDEaq 88 (190)
T PRK04296 77 EKIDCVLIDEAQ 88 (190)
T ss_pred CCCCEEEEEccc
Confidence 344589999983
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.12 Score=55.56 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=56.5
Q ss_pred cCceEEEecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEec-CChHHHhh-hcCCccEEecCC
Q 002606 255 KKKFVLLLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTT-RSEEVCGW-MEAHQNFKVACL 330 (901)
Q Consensus 255 ~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTt-R~~~v~~~-~~~~~~~~l~~L 330 (901)
+++=++|+|++... .....+...+..-. .++.+|++| +-..+... .+....+.+.++
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------------~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~ 191 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP-------------------PGTVFLLVSARIDRLLPTILSRCRQFPMTVP 191 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC-------------------cCcEEEEEECChhhCcHHHHhcCEEEEecCC
Confidence 34458889998653 34444444443332 456555554 44555433 344578999999
Q ss_pred ChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHH
Q 002606 331 SHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIG 376 (901)
Q Consensus 331 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g 376 (901)
+.++..+.+.+. + . + + ...++..++|.|..+..+.
T Consensus 192 ~~~~~~~~L~~~-~-~----~-~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 192 APEAAAAWLAAQ-G-V----A-D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred CHHHHHHHHHHc-C-C----C-h----HHHHHHHcCCCHHHHHHHH
Confidence 999999998765 1 1 1 1 1235778899997655443
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.40 E-value=0.019 Score=57.85 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-C---CCcccccccc---HHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKI-G---LLNDTWKNRR---IEQK 245 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-~---~~~~~~~~~~---~~~~ 245 (901)
..+++.|+|.+|+|||++|.++.... ......++|++... ++...+.+. ++.. . ...-.....+ ..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 35799999999999999999988776 23356889998875 666555443 3321 0 0000001112 2233
Q ss_pred HHHHHHHHcc-CceEEEecccc
Q 002606 246 ALDIFRILKK-KKFVLLLDDIW 266 (901)
Q Consensus 246 ~~~l~~~l~~-kr~LlVlDdv~ 266 (901)
...+.+.+.. +.-+||+|-+.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4555555544 45689999983
No 231
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.63 Score=50.68 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH-
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL- 253 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 253 (901)
|=-.++|++|.|||+++.++++.. .|+..- +..+...+-. .+++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~---------------------------dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDS---------------------------DLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcH---------------------------HHHHHHH
Confidence 346789999999999999999987 454221 2211111111 133333
Q ss_pred -ccCceEEEecccccccccccccccCCCCCCCccccccc---CCCCCCCCCCCC-cEEE-EecCChHH-----HhhhcCC
Q 002606 254 -KKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKV---GDPLPSPEKSSE-SKVV-FTTRSEEV-----CGWMEAH 322 (901)
Q Consensus 254 -~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g-s~ii-iTtR~~~v-----~~~~~~~ 322 (901)
...+-+||+.|++-..+...-...-..........+.. -.++..++++.| =||| .||-..+- .+....+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 23567889999865422211111000000000000111 122333444443 3554 57765543 2222345
Q ss_pred ccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHHHHHhccCC
Q 002606 323 QNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMACKK 383 (901)
Q Consensus 323 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~g~~l~~~~ 383 (901)
..+.+.--+.+....||....+... .++ +..+|.+.-.|.-+.=..++..|-.++
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Ccc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 6789999999999999999887653 222 355555555666555555555544333
No 232
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.36 E-value=0.087 Score=55.01 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 160 SQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 160 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
+.++++..++..+ .-|.+.|++|+|||++|+.+.... .. ..+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555555543 355689999999999999998754 22 23455555555555443
No 233
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.36 E-value=0.014 Score=60.20 Aligned_cols=93 Identities=20% Similarity=0.373 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC-CeEEEEEeCCcC-CHHHHHHHHHHHhCCCcc-----ccccccHH-
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF-DFVIWVVVSKDL-QIEKIQESIGEKIGLLND-----TWKNRRIE- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~- 243 (901)
..-..++|.|.+|+|||||++.+++.. ..+| +.++++-+++.. .+.++.+.+...-.+... ..++....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 345689999999999999999999987 3334 456666676654 345566655543222110 00111111
Q ss_pred ----HHHHHHHHHH---ccCceEEEeccccc
Q 002606 244 ----QKALDIFRIL---KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 ----~~~~~l~~~l---~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++.+|+++||+-.
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122334444 38999999999943
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.13 Score=57.18 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCH--HHHHHHHHHHhCCCcccc-ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQI--EKIQESIGEKIGLLNDTW-KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 249 (901)
...+|.++|.+|+||||.|..++... ... .-..++.|.+. .+.. .+-++..+++.+.+.-.. ...+....+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l-~~~-~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL-KKK-KKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHh-cCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 46799999999999999998888766 212 12234445433 2222 234445556655432111 123444444444
Q ss_pred HHHHccCce-EEEeccc
Q 002606 250 FRILKKKKF-VLLLDDI 265 (901)
Q Consensus 250 ~~~l~~kr~-LlVlDdv 265 (901)
.+..+.+.| ++|+|-.
T Consensus 176 ~~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 176 LEEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 444444444 6666655
No 235
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.33 E-value=0.023 Score=58.52 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------ccccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSST----DFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRR 241 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 241 (901)
...++.|+|.+|+|||++|.+++... .... ....++|++....++...+. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999987553 1112 13679999988877765443 344444332111 01112
Q ss_pred HH---HHHHHHHHHHc-c-CceEEEecccc
Q 002606 242 IE---QKALDIFRILK-K-KKFVLLLDDIW 266 (901)
Q Consensus 242 ~~---~~~~~l~~~l~-~-kr~LlVlDdv~ 266 (901)
.+ .....+.+.+. . +.-+||+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 33344445443 3 56699999984
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.032 Score=56.64 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHh----CCCccccccccHHH---H
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKI----GLLNDTWKNRRIEQ---K 245 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~---~ 245 (901)
...++.|.|.+|+||||+|.+++... ...-..++|++....+. +-.++++... ....-.....+..+ .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 45799999999999999999998776 22344678887655543 2233333321 10000011122222 2
Q ss_pred HHHHHHHHccCceEEEeccc
Q 002606 246 ALDIFRILKKKKFVLLLDDI 265 (901)
Q Consensus 246 ~~~l~~~l~~kr~LlVlDdv 265 (901)
...+...+..+.-++|+|-+
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi 112 (218)
T cd01394 93 IQETETFADEKVDLVVVDSA 112 (218)
T ss_pred HHHHHHHHhcCCcEEEEech
Confidence 23444444445668999987
No 237
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.025 Score=58.61 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhc-c--cCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------cccccH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFL-Q--SSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRRI 242 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (901)
...+.=|+|.+|+|||.|+.+++-... . ..+.=..++|++-...|..+.+. +|+++.+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346999999999999999988765431 1 11223479999998889887775 567766543211 112233
Q ss_pred HHHH---HHHHHHHcc-CceEEEeccc
Q 002606 243 EQKA---LDIFRILKK-KKFVLLLDDI 265 (901)
Q Consensus 243 ~~~~---~~l~~~l~~-kr~LlVlDdv 265 (901)
+++. ..+...+.+ +--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 333334433 4459999998
No 238
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.072 Score=60.52 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKI 222 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 222 (901)
+-+|.++.+++|++++.- -+.+++..+|++|+|||++|+.++.-. ...| +-++++.-.|+.++
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 348999999999999863 256799999999999999999999887 3444 23455665555554
No 239
>PRK06696 uridine kinase; Validated
Probab=96.29 E-value=0.0061 Score=62.08 Aligned_cols=42 Identities=12% Similarity=0.281 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 157 GQQSQLEQVWKCLVE---GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 157 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|++.+++|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888877753 467799999999999999999999887
No 240
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.28 E-value=0.0026 Score=63.33 Aligned_cols=103 Identities=26% Similarity=0.327 Sum_probs=74.3
Q ss_pred ccccEEEEeecCcccccccCCCCCCccEEEecCC--cccccCchHHhcCCCCCEEEccCCCcccc---CcccccCCCCCC
Q 002606 530 WEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNN--VKLRISDGFLQYMSSLKVLSLSHNEVLFE---LPSDISRLVSLE 604 (901)
Q Consensus 530 ~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---lp~~i~~l~~L~ 604 (901)
+..+.++++.+..+..+..++.+++|+.|.++.| +...-..-....+++|++|++++|+ +.. ++ .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchh
Confidence 4567788888888888888899999999999999 3322222224567999999999994 433 22 456678888
Q ss_pred EEeccCCCCcccch----hhhccccccccccccc
Q 002606 605 LLDLSNSRIRELPE----ELAALVNLKCLNLEYT 634 (901)
Q Consensus 605 ~L~l~~~~i~~lp~----~i~~l~~L~~L~L~~~ 634 (901)
.|++.+|..+.+-. -+.-+++|.+||-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 99999987776522 2556777888776555
No 241
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.012 Score=62.33 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---WKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 249 (901)
..+++-|+|++|+||||||.++.... ...-..++||...+.++.. .+++++...+. .+..+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999987776 2234567888776655542 35566554321 1223445555555
Q ss_pred HHHHc-cCceEEEecccc
Q 002606 250 FRILK-KKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l~-~kr~LlVlDdv~ 266 (901)
...++ +..-++|+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456699999984
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.026 Score=57.73 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=51.4
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccc
Q 002606 161 QLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWK 238 (901)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 238 (901)
.+..+.++... .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+..... . .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-N----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-h----c
Confidence 34444444432 2235789999999999999999999872 2234556664 3455555444332 0 1
Q ss_pred cccHHHHHHHHHHHHccCceEEEeccccc
Q 002606 239 NRRIEQKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 239 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
..+.+ .+.+.+. +.=+||+||+..
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 11222 2334454 344888999954
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.0055 Score=61.01 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=60.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHH---HHHHHhCCCccccccccHHHHHHHHHH
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQE---SIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
.+|.|+|+.|+||||++..+.... .......+++- .++. +.... .+..+-.. ..+.......++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPI--EFVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCc--cccccCccceeeeccc------CCCccCHHHHHHH
Confidence 478999999999999999887776 22233333322 1111 10000 11111000 1112234455677
Q ss_pred HHccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHh
Q 002606 252 ILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCG 317 (901)
Q Consensus 252 ~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~ 317 (901)
.+...+=++++|++.+.+......... . .|..++.|+...++..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~-------------------~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---E-------------------TGHLVMSTLHTNSAAK 113 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---H-------------------cCCEEEEEecCCcHHH
Confidence 777777799999997665443322211 1 4566888887765543
No 244
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.22 E-value=0.013 Score=57.33 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEE
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWV 211 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv 211 (901)
...+|.+.|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34699999999999999999999888 3345555555
No 245
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.17 E-value=0.2 Score=57.19 Aligned_cols=194 Identities=17% Similarity=0.161 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhc-----ccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFL-----QSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
.+-+|+.+..+|-+++.. +..+.+-|.|-+|+|||..+..|.+... ..-..|+ .+.|..-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 456899999999888753 3445999999999999999999998652 1123454 3345545555789999
Q ss_pred HHHHHHhCCCccccccccHHHHHHHHHHHH-----ccCceEEEecccccc-----cccccccccCCCCCCCcccccccCC
Q 002606 224 ESIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KKKKFVLLLDDIWQR-----VDLVKVGVPLPSPQKSSESKVKVGD 293 (901)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (901)
..|..++..... ......+.+..+. +.+.+++++|+++.- +.+..+ .-+|..
T Consensus 476 ~~I~~~lsg~~~-----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~-fdWpt~------------ 537 (767)
T KOG1514|consen 476 EKIWEALSGERV-----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI-FDWPTL------------ 537 (767)
T ss_pred HHHHHhcccCcc-----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH-hcCCcC------------
Confidence 999999875432 2223333344443 346789999988432 111111 112211
Q ss_pred CCCCCCCCCCcEEEEecC-C-hH---------HHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHH
Q 002606 294 PLPSPEKSSESKVVFTTR-S-EE---------VCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVA 362 (901)
Q Consensus 294 ~~~~~~~~~gs~iiiTtR-~-~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~ 362 (901)
++||.+|-+= + .+ |+..+ ....+...+-++++-.+....+..+.+.....-.+=+|++|+
T Consensus 538 --------~~sKLvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVA 608 (767)
T KOG1514|consen 538 --------KNSKLVVIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVA 608 (767)
T ss_pred --------CCCceEEEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHH
Confidence 5677665331 1 11 12222 224567777777777777776655443222222233445555
Q ss_pred HHcCCChhHHHHH
Q 002606 363 KECGGLPLALITI 375 (901)
Q Consensus 363 ~~c~GlPLai~~~ 375 (901)
.-.|-.-.|+.+.
T Consensus 609 avSGDaRraldic 621 (767)
T KOG1514|consen 609 AVSGDARRALDIC 621 (767)
T ss_pred hccccHHHHHHHH
Confidence 4444444444433
No 246
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.018 Score=58.96 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhc-ccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFL-QSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
-++|.++|++|.|||+|.+.++.+.. +..+.+....-+.++. ..++...... .+.-...+.+++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 47899999999999999999999872 2234555555554433 2333333322 234455666677777
Q ss_pred HccCceE--EEecccc
Q 002606 253 LKKKKFV--LLLDDIW 266 (901)
Q Consensus 253 l~~kr~L--lVlDdv~ 266 (901)
+.++..| +.+|.|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 7766544 4678883
No 247
>PRK09354 recA recombinase A; Provisional
Probab=96.12 E-value=0.017 Score=61.77 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---WKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 249 (901)
..+++-|+|+.|+||||||.++.... ...-..++||..-..++. ..+++++...+. .+..+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999988776 233467889988777665 345566554321 1223445555555
Q ss_pred HHHHc-cCceEEEecccc
Q 002606 250 FRILK-KKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l~-~kr~LlVlDdv~ 266 (901)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55444 355689999983
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.027 Score=58.24 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
+..-+.++|.+|+|||.||.++.++.. +..+ .+.+++ ..++...+...... .....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 566889999999999999999999982 2223 456664 34566666554432 1111223332
Q ss_pred HccCceEEEeccccc
Q 002606 253 LKKKKFVLLLDDIWQ 267 (901)
Q Consensus 253 l~~kr~LlVlDdv~~ 267 (901)
++. -=||||||+..
T Consensus 165 l~~-~dlLIiDDlG~ 178 (254)
T COG1484 165 LKK-VDLLIIDDIGY 178 (254)
T ss_pred hhc-CCEEEEecccC
Confidence 322 23899999943
No 249
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.10 E-value=0.0095 Score=63.10 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.....++|||++|.|||.+|+.++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356799999999999999999999987
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.033 Score=60.55 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHHhc-CCceE-EEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVE-GSAGI-IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++|-+....++..+..+ ++.+- +-++|+.|+||||+|..+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 357778888888888874 44454 9999999999999999999877
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.07 E-value=0.022 Score=69.81 Aligned_cols=46 Identities=30% Similarity=0.412 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEG---------SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999999888641 23578899999999999999998876
No 252
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.06 E-value=0.044 Score=58.42 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc-------cccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSS----TDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW-------KNRR 241 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 241 (901)
..+++-|+|.+|+|||+|+.+++-.. ... ..-..++||+....|+++.+. +++++++...+.. ...+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 45689999999999999998876433 111 122478999998888888775 4677776543210 1113
Q ss_pred HHHHH---HHHHHHHc-cCceEEEecccc
Q 002606 242 IEQKA---LDIFRILK-KKKFVLLLDDIW 266 (901)
Q Consensus 242 ~~~~~---~~l~~~l~-~kr~LlVlDdv~ 266 (901)
.++.. ..+...+. ++--|||+|-+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 33333 33333443 345589999983
No 253
>PRK04132 replication factor C small subunit; Provisional
Probab=96.04 E-value=0.097 Score=62.72 Aligned_cols=153 Identities=12% Similarity=0.044 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHhhhcccCCCC-CeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEE
Q 002606 182 MGGVGKTTLLTHINNKFLQSSTDF-DFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVL 260 (901)
Q Consensus 182 ~gGiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 260 (901)
|.++||||+|..++++.. .+.+ ..++-+.+++......+. ++++.+....+ .-..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~----------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTKP----------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC----------------cCCCCCEEE
Confidence 789999999999998862 1222 246677777765555433 33333211000 001245699
Q ss_pred Eecccccc--cccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCC-hHHHhh-hcCCccEEecCCChHHHH
Q 002606 261 LLDDIWQR--VDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRS-EEVCGW-MEAHQNFKVACLSHNDAW 336 (901)
Q Consensus 261 VlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~ 336 (901)
|+|+++.. .....+...+.... ..+++|++|.+ ..+... .+....+++.+++.++..
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~-------------------~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~ 695 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFS-------------------SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIA 695 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCC-------------------CCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHH
Confidence 99999754 23444443333221 34566655444 344332 234678999999999999
Q ss_pred HHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHHH
Q 002606 337 ELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 337 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 375 (901)
+.+...+.......+ .+....|++.|+|.+-.+..+
T Consensus 696 ~~L~~I~~~Egi~i~---~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 696 KRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 888876654332222 346789999999988654433
No 254
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.04 E-value=0.031 Score=55.00 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHH----hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCL----VEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.|...+.+++-- ......-|.+||.-|+|||+|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 35799888888876643 23356688999999999999999999988
No 255
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.04 E-value=0.023 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINN 196 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~ 196 (901)
.-.+++|+|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446999999999999999999864
No 256
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.03 E-value=0.017 Score=52.90 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccCcccccCCCCCCEEeccCCCCcccch-hhhcccccc
Q 002606 549 MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLDLSNSRIRELPE-ELAALVNLK 627 (901)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~ 627 (901)
+..+++|+.+.+..+ +..++...|.+++.|+.+.+.++ ....-...+..+.+|+.+.+..+ +..++. .+.+. +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 344555555555443 44455555555555555555432 11111223444555555555443 444422 23333 555
Q ss_pred ccccccccCcCCCCccccCCCccc
Q 002606 628 CLNLEYTFDLAKIPWNLISNFSRL 651 (901)
Q Consensus 628 ~L~L~~~~~l~~lp~~~i~~l~~L 651 (901)
.+.+.. .+..++.+.|.++++|
T Consensus 107 ~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT--B-SS----GGG-----
T ss_pred EEEECC--CccEECCccccccccC
Confidence 554433 2344444444444443
No 257
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.02 E-value=0.029 Score=59.65 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 157 GQQSQLEQVWKCLVE----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 157 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
+|....+...+++.. ...+-+.++|..|+|||.||..+++... ...+ .+.+++++ +++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEHH------HHHHHHHHHHhc
Confidence 555555555666653 1345789999999999999999999983 2233 35666543 455555544321
Q ss_pred CccccccccHHHHHHHHHHHHccCceEEEeccccc
Q 002606 233 LNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
.+..+ ..+.++ +-=||||||+..
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~ 228 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGA 228 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCC
Confidence 11222 222333 345899999953
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.99 E-value=0.26 Score=60.39 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------G--SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|-+..++.+.+.+.. . ....+.++|+.|+|||+||+.+.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999888753 1 23456789999999999999998876
No 259
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.019 Score=52.83 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLND 235 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (901)
+|.|-|++|+||||+|+.+.++. .-.| | +...++++|++..|+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCCHH
Confidence 78999999999999999999987 2111 2 334789999999987653
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.025 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|.|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998765
No 261
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.93 E-value=0.018 Score=65.38 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..++..++|++|+||||||+.++++. .| .++=|.+|+.-+...+-..|...+..+. .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999998775 23 4777888888887777777766554321 2
Q ss_pred H--ccCceEEEecccccc
Q 002606 253 L--KKKKFVLLLDDIWQR 268 (901)
Q Consensus 253 l--~~kr~LlVlDdv~~~ 268 (901)
+ .+++.-||+|.++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 257788999998653
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.91 E-value=0.28 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|.++|..|+||||+|.+++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988766
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.89 E-value=0.0095 Score=66.85 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=40.0
Q ss_pred cccchhHHHHHHHHHHh------cCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLV------EGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+++|.++.+++|++.|. +...+++.++|+.|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999993 3466899999999999999999998876
No 264
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.88 E-value=0.058 Score=55.47 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------------
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---------------- 236 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 236 (901)
..+++.|.|.+|+|||++|.++..... ..-+.++||+... ++.++.+.+. +++.....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 457999999999999999999766541 2345788888654 4455555433 33332100
Q ss_pred ------------cccccHHHHHHHHHHHHcc-CceEEEecccc
Q 002606 237 ------------WKNRRIEQKALDIFRILKK-KKFVLLLDDIW 266 (901)
Q Consensus 237 ------------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 266 (901)
....+.++....+.+.++. +.-.+|+|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls 136 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVT 136 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChh
Confidence 0123455666666666643 44479999983
No 265
>PRK06547 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=56.72 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 164 QVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+...+......+|+|.|++|+||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556678899999999999999999998765
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.84 E-value=0.044 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..|-|++..|.||||+|....-+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467888888999999999877665
No 267
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.078 Score=60.76 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=62.0
Q ss_pred CcccchhHHHHHHHHHHhc----------C--CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 153 PTVVGQQSQLEQVWKCLVE----------G--SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~----------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
+++=|.++.+.+|.+-+.- + ..+=|.++|++|.|||-+|++|+-+. ...|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 3556788888888887642 1 34578899999999999999998877 2455666554
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEeccccc
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
+++..- -+.+++...+.+.+.-..++|+|.||.+++
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222221 122334444444445566999999999865
No 268
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.83 E-value=0.06 Score=59.91 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTW-KNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (901)
...+|.++|..|+||||.|..++... .. ..+ .+..|++... ....+.+..++++++.+.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999877 32 222 4444544321 223455667777776543211 1223333333444
Q ss_pred HHHccCceEEEeccc
Q 002606 251 RILKKKKFVLLLDDI 265 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv 265 (901)
+...+. =++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444444 56888877
No 269
>PRK06921 hypothetical protein; Provisional
Probab=95.82 E-value=0.036 Score=57.79 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEe
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVV 213 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 213 (901)
...-+.++|..|+|||+||..+++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 356799999999999999999999872 221345667654
No 270
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.82 E-value=0.067 Score=57.53 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---cCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------cccccH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQ---SSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRRI 242 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (901)
..+++-|+|.+|+|||+|+.+++-.... ..+.-..++||+....|+++++.+ ++++++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4568889999999999999987643300 012234789999999999888754 66777654321 112233
Q ss_pred HHHH---HHHHHHHc-cCceEEEeccc
Q 002606 243 EQKA---LDIFRILK-KKKFVLLLDDI 265 (901)
Q Consensus 243 ~~~~---~~l~~~l~-~kr~LlVlDdv 265 (901)
++.. ..+...+. .+--|||+|-+
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3332 22333333 34458999998
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.80 E-value=0.047 Score=52.33 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCC
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQ 218 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~ 218 (901)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998887 22345677887665543
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.79 E-value=0.038 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++.++|++|+||||+++.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 273
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.083 Score=61.51 Aligned_cols=188 Identities=18% Similarity=0.151 Sum_probs=98.7
Q ss_pred cccchhHHH---HHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 154 TVVGQQSQL---EQVWKCLVEG---------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 154 ~~vGr~~~~---~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
++.|-++.+ .+++++|..+ -++=+-++|++|+|||-||++++.+. . +-|++++.. +
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----E 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----E 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----H
Confidence 467777654 5556666542 24568899999999999999999887 2 234454432 1
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHH-ccCceEEEecccccccccccccccCCCCCCCccccccc-CCCCCC--
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-KKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKV-GDPLPS-- 297 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 297 (901)
+ ++.+... . ..++..+...- ...++++.+|+++...--.. +.... + +..+.-.. .|.+..
T Consensus 380 F----vE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~-~--~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 380 F----VEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTG-G--GQDEREQTLNQLLVEMD 443 (774)
T ss_pred H----HHHhccc-------c-hHHHHHHHHHhhccCCeEEEeccccccccccc-ccccC-C--CChHHHHHHHHHHHHhc
Confidence 1 1111110 0 11222222222 35678999998854211000 00000 0 00000000 000000
Q ss_pred -CCCCCCcEEEEecCChHHH-----hhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhH
Q 002606 298 -PEKSSESKVVFTTRSEEVC-----GWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLA 371 (901)
Q Consensus 298 -~~~~~gs~iiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 371 (901)
-..+.+--+|-+|...++. .....+..+.++.-+...-.++|..++...... .+..++++ |+...-|.+=|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 0011223334456555542 222345678888888899999999988765422 34455666 99999888755
Q ss_pred H
Q 002606 372 L 372 (901)
Q Consensus 372 i 372 (901)
.
T Consensus 521 d 521 (774)
T KOG0731|consen 521 D 521 (774)
T ss_pred H
Confidence 4
No 274
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.029 Score=55.26 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|||.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999999988
No 275
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.14 Score=57.32 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL 253 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 253 (901)
..=|.+||++|.|||-||++|+|+. +-+| ++|..+ +++..- -+.++......+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHhh
Confidence 4568899999999999999999987 4454 444443 222211 1122222333334444
Q ss_pred ccCceEEEeccccccc-------cc------ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHH----
Q 002606 254 KKKKFVLLLDDIWQRV-------DL------VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVC---- 316 (901)
Q Consensus 254 ~~kr~LlVlDdv~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~---- 316 (901)
..-+++|.||.++.-. .| ..+..-+ ..+....|.-||-.|...++.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtEl-----------------DGl~~R~gV~viaATNRPDiIDpAi 664 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTEL-----------------DGLEERRGVYVIAATNRPDIIDPAI 664 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHh-----------------cccccccceEEEeecCCCcccchhh
Confidence 5689999999995321 01 1111111 111122567777766655542
Q ss_pred -hhhcCCccEEecCCChHHHHHHHHHHhcCCc--cCCChhHHHHHHHHHHHcCCC
Q 002606 317 -GWMEAHQNFKVACLSHNDAWELFQQKVGEET--LNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 317 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~Gl 368 (901)
....-+....+..-+.+|-.++++....... ...+-++.++|+. .+|.|.
T Consensus 665 LRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 665 LRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred cCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 2112345677888889999999998887332 2334456666654 345554
No 276
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.17 Score=49.82 Aligned_cols=193 Identities=13% Similarity=0.188 Sum_probs=97.0
Q ss_pred ccc-hhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 155 VVG-QQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 155 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
+|| -++.+++|.+.+.- .+.+-+.++|++|.|||-||+.|+++. .+-|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 455 56667776665531 256678899999999999999999886 2455677654
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHH-HHccCceEEEecccccccccccccccCCCCCCCcc-----cccccCCC
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFR-ILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSE-----SKVKVGDP 294 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 294 (901)
++.+..+ | .. ...+..+.- .-..-+.+|..|.+++. +..-.+++..+- ..+..-..
T Consensus 216 elvqk~i---g-eg--------srmvrelfvmarehapsiifmdeidsi------gs~r~e~~~ggdsevqrtmlellnq 277 (404)
T KOG0728|consen 216 ELVQKYI---G-EG--------SRMVRELFVMAREHAPSIIFMDEIDSI------GSSRVESGSGGDSEVQRTMLELLNQ 277 (404)
T ss_pred HHHHHHh---h-hh--------HHHHHHHHHHHHhcCCceEeeeccccc------ccccccCCCCccHHHHHHHHHHHHh
Confidence 2222211 1 00 001111111 11245678888888542 111111110000 00000001
Q ss_pred CCCCCCCCCcEEEEecCChHHHh-----hhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 295 LPSPEKSSESKVVFTTRSEEVCG-----WMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 295 ~~~~~~~~gs~iiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
+..-...+.-+||..|..-++.. ....+..|+..+-+++.-.++++-+....+...--+++.+|+++....|.--
T Consensus 278 ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaev 357 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEV 357 (404)
T ss_pred ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchh
Confidence 11112236678888776555532 2223456788888887777777766544432223345555555443333333
Q ss_pred hHHHHHHH
Q 002606 370 LALITIGR 377 (901)
Q Consensus 370 Lai~~~g~ 377 (901)
-++-+=|+
T Consensus 358 k~vcteag 365 (404)
T KOG0728|consen 358 KGVCTEAG 365 (404)
T ss_pred hhhhhhhh
Confidence 33434344
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.75 E-value=0.071 Score=47.55 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=33.1
Q ss_pred cccchhHHHHHHHHHHh----c---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLV----E---GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++|-+-..+.+++.+. . ...-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676655555555554 3 245599999999999999999988874
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.043 Score=59.50 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..++.++|+.|+||||++.++.... ..+.....+..++... .....+-++...+.++.+... ..+..++.. ....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~-~l~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQL-ALAE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHH-HHHH
Confidence 4699999999999999999998876 1111223456665332 224455666667777765422 122222222 2334
Q ss_pred HccCceEEEecccc
Q 002606 253 LKKKKFVLLLDDIW 266 (901)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (901)
+.++ =++++|...
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4555 456688873
No 279
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.73 E-value=0.16 Score=53.71 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW---KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (901)
..+++-|+|+.|+||||||.++.... +..-..++||.....++. ..++++|...+.. +....++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 35699999999999999999998876 233457899988777665 3445556544321 223445555555
Q ss_pred HHHHcc-CceEEEeccccc
Q 002606 250 FRILKK-KKFVLLLDDIWQ 267 (901)
Q Consensus 250 ~~~l~~-kr~LlVlDdv~~ 267 (901)
.+.++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555544 445889998843
No 280
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.72 E-value=0.0042 Score=36.88 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=10.6
Q ss_pred CCEEeccCCCCcccchhhh
Q 002606 603 LELLDLSNSRIRELPEELA 621 (901)
Q Consensus 603 L~~L~l~~~~i~~lp~~i~ 621 (901)
|++|++++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555544
No 281
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.71 E-value=0.052 Score=60.27 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTW-KNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (901)
...++.++|..|+||||.|..++... ..+..+ .+..|++... +...+.++....+.+.+.... ...+..+.+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999999988775 211222 3444544321 122334445556665543211 1233444544444
Q ss_pred HHHccCce-EEEeccc
Q 002606 251 RILKKKKF-VLLLDDI 265 (901)
Q Consensus 251 ~~l~~kr~-LlVlDdv 265 (901)
+....+.| ++|+|-.
T Consensus 176 ~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 44544555 7777765
No 282
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.71 E-value=0.039 Score=54.04 Aligned_cols=90 Identities=23% Similarity=0.318 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE---eCCcCCHHHHHH------HHHHHhCCCcc---ccccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV---VSKDLQIEKIQE------SIGEKIGLLND---TWKNR 240 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~------~i~~~l~~~~~---~~~~~ 240 (901)
.-.+++|+|..|.|||||++.++... ......+++. +.+ .+...... ++++.+++... ....-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45699999999999999999998765 1233334332 211 12222111 14555554321 01111
Q ss_pred -cHHHHHHHHHHHHccCceEEEeccccc
Q 002606 241 -RIEQKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 241 -~~~~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
..+...-.+.+.+...+-++++|+--.
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~ 126 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTS 126 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 223333345666777788999998743
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.67 E-value=0.07 Score=54.81 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------------
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---------------- 236 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 236 (901)
..+++.|+|.+|+|||++|.++.... ...-..++|++..+. ...+.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45799999999999999999986654 123457888888654 44555543 334432211
Q ss_pred --cccccHHHHHHHHHHHHcc-CceEEEecccc
Q 002606 237 --WKNRRIEQKALDIFRILKK-KKFVLLLDDIW 266 (901)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 266 (901)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335666667776654 55689999974
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.027 Score=63.68 Aligned_cols=73 Identities=27% Similarity=0.227 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL--QIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
...-|.|.|+.|+|||+||+.+++... +....++.+|+++.-. ..+.+++.+ ...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHH-------------------HHHHH
Confidence 345789999999999999999999983 5666677777765431 122222211 12233
Q ss_pred HHHccCceEEEecccc
Q 002606 251 RILKKKKFVLLLDDIW 266 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv~ 266 (901)
+.+...+-+|||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4556678899999994
No 285
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.044 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|+|..|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998865
No 286
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.65 E-value=0.08 Score=52.57 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999988
No 287
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.64 E-value=0.37 Score=48.70 Aligned_cols=208 Identities=12% Similarity=0.143 Sum_probs=115.0
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcc---cCCCCCeEEEEEeCCc----------C----
Q 002606 155 VVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQ---SSTDFDFVIWVVVSKD----------L---- 217 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~----------~---- 217 (901)
+.++++....+......++.+-..++|++|.||-|.+..+.++... .+-+-+...|.+.+.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5677777788877777677889999999999999988777666521 1123345556554332 1
Q ss_pred -------CHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHccCce-EEEecccccc--cccccccccCCCCCCCccc
Q 002606 218 -------QIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKF-VLLLDDIWQR--VDLVKVGVPLPSPQKSSES 287 (901)
Q Consensus 218 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ 287 (901)
.-+.+.++|+++.+-..+ . +.-.++.| ++|+-.+++- +.-..+........
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs----- 155 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS----- 155 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-----
Confidence 112334444444332110 0 00112344 4455444321 11111111111111
Q ss_pred ccccCCCCCCCCCCCCcEEEEecCCh--HHHhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHc
Q 002606 288 KVKVGDPLPSPEKSSESKVVFTTRSE--EVCGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKEC 365 (901)
Q Consensus 288 ~~~~~~~~~~~~~~~gs~iiiTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 365 (901)
+.+|+|+...+- -+...-...-.+++...+++|....+++.+..+....+ +++++.|++++
T Consensus 156 --------------~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS 218 (351)
T KOG2035|consen 156 --------------SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKS 218 (351)
T ss_pred --------------cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHh
Confidence 456776643221 12222123346799999999999999998877664444 56899999999
Q ss_pred CCChhHHHHHHHHhccC----------CChHHHHHHHHHHhcc
Q 002606 366 GGLPLALITIGRAMACK----------KRPEEWKYAIEVLRTS 398 (901)
Q Consensus 366 ~GlPLai~~~g~~l~~~----------~~~~~w~~~~~~l~~~ 398 (901)
+|.---...+--.++.+ -..-+|+-+..+....
T Consensus 219 ~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 219 NRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 98754333332222211 1245799877766543
No 288
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.64 E-value=0.063 Score=53.69 Aligned_cols=95 Identities=25% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCcc-----cc
Q 002606 165 VWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLND-----TW 237 (901)
Q Consensus 165 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~ 237 (901)
.++.|.. ..-..++|.|.+|+|||+|+..+.+.. .-+.++++.+++.. .+.++.+.+...-..... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 4555543 344689999999999999999998886 23345778787653 455566655433111110 00
Q ss_pred ccccHH---------HHHHHHHHHHccCceEEEecccc
Q 002606 238 KNRRIE---------QKALDIFRILKKKKFVLLLDDIW 266 (901)
Q Consensus 238 ~~~~~~---------~~~~~l~~~l~~kr~LlVlDdv~ 266 (901)
++.... ..+++++. +++.+|+++||+-
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhH
Confidence 111111 12233333 7899999999993
No 289
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.64 E-value=0.039 Score=67.21 Aligned_cols=46 Identities=28% Similarity=0.396 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------G--SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||.+|+.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999888752 1 34578999999999999999988776
No 290
>PRK07667 uridine kinase; Provisional
Probab=95.63 E-value=0.024 Score=56.23 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=29.5
Q ss_pred HHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 162 LEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 162 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+.+.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3555665554 345799999999999999999998877
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.62 E-value=0.12 Score=61.24 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=88.1
Q ss_pred cccchhHHHHHHHHH---HhcC---------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 154 TVVGQQSQLEQVWKC---LVEG---------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
++.|.+..++++.+. +... -.+-|.++|++|+|||++|+.+.+.. ...| +.+..+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 356766665555443 3221 12348999999999999999998876 2233 222221 1
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCc----ccccccCCCCCC
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSS----ESKVKVGDPLPS 297 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 297 (901)
+.. .. ...........+...-...+++|++|+++.-..-.. .......... ...+.. +..
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~--~~~~g~~~~~~~~ln~lL~~---mdg 284 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGLGGGHDEREQTLNQMLVE---MDG 284 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC--CCCCCCchHHHHHHHHHHHh---hhc
Confidence 111 11 011111222223333345788999999954210000 0000000000 000000 000
Q ss_pred CCCCCCcEEEEecCChHHHh-hh----cCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCC
Q 002606 298 PEKSSESKVVFTTRSEEVCG-WM----EAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGL 368 (901)
Q Consensus 298 ~~~~~gs~iiiTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 368 (901)
.....+.-||.||...+... .. ..+..+.+...+.++-.++++.+..........+ ...+++.+.|.
T Consensus 285 ~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred ccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 01113455666776665422 11 2346778888888888888888775543222222 23456666553
No 292
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.62 E-value=0.09 Score=56.68 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------ccccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSST----DFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRR 241 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 241 (901)
...++-|+|.+|+|||+++.+++-.. .... .=..++||+....++...+.+ +++.++...+. ....+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCC
Confidence 45789999999999999999987664 1111 114799999988888877654 44555543211 01111
Q ss_pred ---HHHHHHHHHHHHcc--CceEEEeccc
Q 002606 242 ---IEQKALDIFRILKK--KKFVLLLDDI 265 (901)
Q Consensus 242 ---~~~~~~~l~~~l~~--kr~LlVlDdv 265 (901)
.......+.+.+.. +--|||+|-+
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 12234445555543 3348999998
No 293
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.26 Score=52.91 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCcEEEEecCCh-HHHhh-hcCCccEEecCCChHHHHHHHHHH
Q 002606 302 SESKVVFTTRSE-EVCGW-MEAHQNFKVACLSHNDAWELFQQK 342 (901)
Q Consensus 302 ~gs~iiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 342 (901)
.++.+|++|.+. .+... ......+.+.+++.+++.+.+.+.
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 345566666654 34433 234578899999999999888654
No 294
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.60 E-value=0.064 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNK 197 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (901)
.-.+|+|+|++|+|||||...+..-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4469999999999999999988643
No 295
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.024 Score=61.89 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=35.9
Q ss_pred cccchh---HHHHHHHHHHhcC--------C-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQ---SQLEQVWKCLVEG--------S-AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++-|-| +++++|+++|.+. . .+=|.++|++|.|||-||++|+.+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 356665 4678889998763 2 4568899999999999999998886
No 296
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.56 E-value=0.056 Score=57.02 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=47.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
..++++|+|++|+||||++..+.... .....-..+..|+.... ......+....+.++.+.. ...+..++...+ +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l-~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL-D 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH-H
Confidence 35799999999999999999998876 22211124566654431 1223333444444554432 122333333333 3
Q ss_pred HHccCceEEEeccc
Q 002606 252 ILKKKKFVLLLDDI 265 (901)
Q Consensus 252 ~l~~kr~LlVlDdv 265 (901)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.54 E-value=0.081 Score=56.63 Aligned_cols=92 Identities=14% Similarity=0.231 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---cCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc-------ccccH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQ---SSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW-------KNRRI 242 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 242 (901)
...++.|+|.+|+|||||+..++..... ....-..++|++....+....+ ..+++.++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 4679999999999999999988753310 1112236799998887777764 45566665433210 11223
Q ss_pred HHHH---HHHHHHHc-cCceEEEeccc
Q 002606 243 EQKA---LDIFRILK-KKKFVLLLDDI 265 (901)
Q Consensus 243 ~~~~---~~l~~~l~-~kr~LlVlDdv 265 (901)
++.. ..+...+. .+--|||+|-+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECc
Confidence 3332 22333343 34558999998
No 298
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.52 E-value=0.032 Score=61.29 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCcccc----cccc-HH---
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDTW----KNRR-IE--- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~-~~--- 243 (901)
.-..++|+|..|+|||||++.+.+.. ..+.++.+-+++.. .+.++.+.++..-++..... .+.+ ..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999997654 22456666676654 33455555544322221100 1111 11
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 --QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 --~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++++|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1112233333 68999999999943
No 299
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.52 E-value=0.025 Score=54.99 Aligned_cols=74 Identities=24% Similarity=0.398 Sum_probs=42.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
...-+.++|..|+|||.||..+.+...+ .. ..+.|+. ..+++..+-..- .....+. +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 3467999999999999999999988732 22 3456664 344555543211 1112222 2233
Q ss_pred HccCceEEEeccccc
Q 002606 253 LKKKKFVLLLDDIWQ 267 (901)
Q Consensus 253 l~~kr~LlVlDdv~~ 267 (901)
+.+ -=||||||+..
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 433 34888999953
No 300
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.52 E-value=0.061 Score=64.98 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHHhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE-------G--SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 3578988888888887763 1 23467899999999999999998876
No 301
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.48 E-value=0.07 Score=58.30 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW---KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (901)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+ ..-+++++...+.. ...+.+++...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 356999999999999999999987762 22346778875433 3332 22345555433221 122333333322
Q ss_pred HHHHccCceEEEecccc
Q 002606 250 FRILKKKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l~~kr~LlVlDdv~ 266 (901)
. +.+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 1 2366789999983
No 302
>PRK14974 cell division protein FtsY; Provisional
Probab=95.45 E-value=0.12 Score=55.54 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=49.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhCCCccc-cccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL--QIEKIQESIGEKIGLLNDT-WKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l 249 (901)
+..+|.++|+.|+||||++..++... . ...+ .++.+.. +.+ ...+.++..+..++.+... ....+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46799999999999999998888766 2 2233 3444432 222 2334455667777654311 1122222222222
Q ss_pred HHHH-ccCceEEEecccc
Q 002606 250 FRIL-KKKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l-~~kr~LlVlDdv~ 266 (901)
.+.. ....=++++|-..
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 2222 2222388888873
No 303
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.43 E-value=0.027 Score=54.08 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC--cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK--DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
.-.+++|.|..|.|||||.+.++... ......+++.-.. ..+..+. ..+..+.- .+-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~---~qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMV---YQLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEE---EecCHHHHHHHHHH
Confidence 44699999999999999999998765 2233444443111 1111111 11111110 01122223333455
Q ss_pred HHHccCceEEEeccccc
Q 002606 251 RILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv~~ 267 (901)
+.+-.++-++++|+.-.
T Consensus 95 ral~~~p~illlDEP~~ 111 (163)
T cd03216 95 RALARNARLLILDEPTA 111 (163)
T ss_pred HHHhcCCCEEEEECCCc
Confidence 66667778999998743
No 304
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.43 E-value=0.0043 Score=61.67 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=41.2
Q ss_pred CCCccEEEecCCcccccC----chHHhcCCCCCEEEccCCCccc----cCc-------ccccCCCCCCEEeccCCCCc-c
Q 002606 552 CPHLLTLFLNNNVKLRIS----DGFLQYMSSLKVLSLSHNEVLF----ELP-------SDISRLVSLELLDLSNSRIR-E 615 (901)
Q Consensus 552 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~----~lp-------~~i~~l~~L~~L~l~~~~i~-~ 615 (901)
+..+..++|++|.+..-. ...+.+-++|++.+++.- ... ++| +.+-+|++|+..+||.|-+. +
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 455666677776543211 112334556666666544 111 122 23445666666666666444 2
Q ss_pred cch----hhhccccccccccccc
Q 002606 616 LPE----ELAALVNLKCLNLEYT 634 (901)
Q Consensus 616 lp~----~i~~l~~L~~L~L~~~ 634 (901)
.|. -|++-+.|.||.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 332 2445556666666655
No 305
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.40 E-value=0.0021 Score=74.33 Aligned_cols=113 Identities=25% Similarity=0.158 Sum_probs=75.4
Q ss_pred HhcCCCCCEEEccCCCcccc--CcccccCCCCCCEEeccCC--CCcc----cchhhhccccccccccccccCcCCCCccc
Q 002606 573 LQYMSSLKVLSLSHNEVLFE--LPSDISRLVSLELLDLSNS--RIRE----LPEELAALVNLKCLNLEYTFDLAKIPWNL 644 (901)
Q Consensus 573 ~~~l~~L~~L~L~~~~~~~~--lp~~i~~l~~L~~L~l~~~--~i~~----lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 644 (901)
...+++|+.|.+.++..+.. +-.....+++|+.|+++++ .+.. .+.....+.+|+.|++++|..+...--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44589999999998866665 3346678899999999873 2221 12335567899999999986544443222
Q ss_pred cC-CCcccceeeccccc-ccCCCCCCchhhHHhhcCCCCCcEEEEEecc
Q 002606 645 IS-NFSRLHVLRMFGNA-IRSGSFDGDELMVKELLGLKHLEVLSFTLRS 691 (901)
Q Consensus 645 i~-~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 691 (901)
+. .+++|++|.+.+|. ++. .........+++|+.|+++.+.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~------~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD------EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHhhCCCcceEccCCCCccch------hHHHHHHHhcCcccEEeeecCc
Confidence 22 47899999977665 222 2234444567889999988544
No 306
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.39 E-value=0.012 Score=58.65 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=60.7
Q ss_pred ccccEEEEeecCcccc-----c-ccCCCCCCccEEEecCCccc----ccCc------hHHhcCCCCCEEEccCCCccccC
Q 002606 530 WEKVRRLSLMENQIKV-----I-LGMPRCPHLLTLFLNNNVKL----RISD------GFLQYMSSLKVLSLSHNEVLFEL 593 (901)
Q Consensus 530 ~~~lr~l~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~~----~~~~------~~~~~l~~L~~L~L~~~~~~~~l 593 (901)
+..+..+++++|.+.. + ..+.+-++|+..+++.-... .++. ..+-+|++|+..+||.|.+-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4678889999998743 1 12456678888887654221 1111 23568999999999999665555
Q ss_pred cc----cccCCCCCCEEeccCCCCccc
Q 002606 594 PS----DISRLVSLELLDLSNSRIREL 616 (901)
Q Consensus 594 p~----~i~~l~~L~~L~l~~~~i~~l 616 (901)
|+ .|++-+.|.+|.+++|++..+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCcc
Confidence 54 467788999999999987754
No 307
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.045 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998764
No 308
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.37 E-value=0.022 Score=58.24 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+...+|+|.|+.|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998877
No 309
>PRK04328 hypothetical protein; Provisional
Probab=95.33 E-value=0.08 Score=54.77 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---------------
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW--------------- 237 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------- 237 (901)
..+++.|.|.+|+|||+||.++.... -..-+.++|++..+. +..+.+ .+++++......
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 45799999999999999999976654 123456788887653 333333 344444321000
Q ss_pred -------------ccccHHHHHHHHHHHHcc-CceEEEeccc
Q 002606 238 -------------KNRRIEQKALDIFRILKK-KKFVLLLDDI 265 (901)
Q Consensus 238 -------------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 265 (901)
+..+.+.....+.+.++. +.-++|+|-+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSl 137 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSV 137 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeCh
Confidence 112344555666666544 4457999987
No 310
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.32 E-value=0.14 Score=52.46 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------------
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---------------- 236 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 236 (901)
...++.|.|.+|+||||+|.++..... ..-..++|++.... .+.+.+. +++++.....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 457999999999999999998765541 12356788876443 3444333 3333322110
Q ss_pred ----c--ccccHHHHHHHHHHHHcc---CceEEEeccc
Q 002606 237 ----W--KNRRIEQKALDIFRILKK---KKFVLLLDDI 265 (901)
Q Consensus 237 ----~--~~~~~~~~~~~l~~~l~~---kr~LlVlDdv 265 (901)
+ ...+.++....+.+.++. +.-++|+|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl 130 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSM 130 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCc
Confidence 0 112455555666655543 3457888887
No 311
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.084 Score=61.95 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=88.4
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-----eEEEEEeCCcCCHHHHHHHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-----FVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-----~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
.++||++++.++++.|....-.--.++|.+|+|||++|.-++.+.. .+.-+ ..++. .++..+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s-----LD~g~L------ 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS-----LDLGSL------ 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE-----ecHHHH------
Confidence 3699999999999999874333345789999999999988877761 22211 11111 011111
Q ss_pred HhCCCccccccccHHHHHHHHHHHHc-cCceEEEecccccccccccccccCCCCCCCcccccccCCC-CCCCCCCCCcEE
Q 002606 229 KIGLLNDTWKNRRIEQKALDIFRILK-KKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDP-LPSPEKSSESKV 306 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gs~i 306 (901)
.... . -..+.+++...+.+.++ .++.+|++|.+..---- ++..+. -+..+.+ -|.+..|.--.|
T Consensus 238 -vAGa--k-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGA---------G~~~G~-a~DAaNiLKPaLARGeL~~I 303 (786)
T COG0542 238 -VAGA--K-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGA---------GATEGG-AMDAANLLKPALARGELRCI 303 (786)
T ss_pred -hccc--c-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCC---------Cccccc-ccchhhhhHHHHhcCCeEEE
Confidence 1111 1 22345566666666554 45899999998542100 000000 0000000 011112233344
Q ss_pred EEecCChHH------HhhhcCCccEEecCCChHHHHHHHHHH
Q 002606 307 VFTTRSEEV------CGWMEAHQNFKVACLSHNDAWELFQQK 342 (901)
Q Consensus 307 iiTtR~~~v------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 342 (901)
=-||-++.- +......+.+.+..-+.+++...++-.
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 456655532 222234578899999999999988653
No 312
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.30 E-value=0.05 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++|+|..|.|||||.+.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45699999999999999999998765
No 313
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.022 Score=52.45 Aligned_cols=25 Identities=48% Similarity=0.527 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..-|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999887
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.28 E-value=0.099 Score=54.38 Aligned_cols=126 Identities=15% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE---eCCcCCHHHHHHHHHHHhC-CCccc
Q 002606 162 LEQVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV---VSKDLQIEKIQESIGEKIG-LLNDT 236 (901)
Q Consensus 162 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l~-~~~~~ 236 (901)
.+.++..+.+ +...-++|+|+.|.|||||.+.+..... .....+++. +....... +++.... .+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERS----EIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHH----HHHHHhccccccc
Confidence 3444444443 4457899999999999999999987762 222333332 11111112 2222221 11100
Q ss_pred c----ccccHHHHHHHHHHHHc-cCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecC
Q 002606 237 W----KNRRIEQKALDIFRILK-KKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTR 311 (901)
Q Consensus 237 ~----~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR 311 (901)
. +..+.......+...+. ..+=++|+|.+-..+.+..+...+. .|..||+||.
T Consensus 170 ~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~----------------------~G~~vI~ttH 227 (270)
T TIGR02858 170 VGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH----------------------AGVSIIATAH 227 (270)
T ss_pred ccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh----------------------CCCEEEEEec
Confidence 0 00011111223333333 5778999999866555544433321 5778999999
Q ss_pred ChHHHh
Q 002606 312 SEEVCG 317 (901)
Q Consensus 312 ~~~v~~ 317 (901)
+..+..
T Consensus 228 ~~~~~~ 233 (270)
T TIGR02858 228 GRDVED 233 (270)
T ss_pred hhHHHH
Confidence 876643
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.28 E-value=0.014 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|+|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998773
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.27 E-value=0.09 Score=52.65 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE-------eCCcCCHHHH--HHHHHHHhCCCc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV-------VSKDLQIEKI--QESIGEKIGLLN 234 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~ 234 (901)
+..+|.++||+|+||||..+.++.+. ..+..-..++-+. ..-+.++++. ++...++.++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 45688899999999999999999988 3233223333322 2223344443 456777766543
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.26 E-value=0.077 Score=53.86 Aligned_cols=128 Identities=19% Similarity=0.163 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-----cCCHHHHHHHHHHHhCCCcccc----ccccHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-----DLQIEKIQESIGEKIGLLNDTW----KNRRIE 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~ 243 (901)
+..+++|+|.+|+||||+++.+..-. .... +.++..-.+ .....+...++++..++..+.. .+-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45699999999999999999998765 2222 233332111 2223345566677766543211 111222
Q ss_pred HH-HHHHHHHHccCceEEEeccccccccc---ccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHhhh
Q 002606 244 QK-ALDIFRILKKKKFVLLLDDIWQRVDL---VKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCGWM 319 (901)
Q Consensus 244 ~~-~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~~~ 319 (901)
++ .-.+.+.|.-++-++|.|..-+.-+. ..+...+.+-. ...|-..+..|.+-.++..+
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-----------------~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-----------------EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-----------------HHhCCeEEEEEEEHHhhhhh
Confidence 22 23466778889999999986443211 11111111100 00467788888888887765
Q ss_pred cC
Q 002606 320 EA 321 (901)
Q Consensus 320 ~~ 321 (901)
..
T Consensus 177 sd 178 (268)
T COG4608 177 SD 178 (268)
T ss_pred cc
Confidence 54
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.25 E-value=0.062 Score=52.13 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998765
No 319
>PHA00729 NTP-binding motif containing protein
Probab=95.24 E-value=0.026 Score=56.31 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 163 EQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+++++.+..++...|.|+|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555666666689999999999999999998875
No 320
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.052 Score=52.74 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998764
No 321
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.23 E-value=0.31 Score=51.70 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=39.2
Q ss_pred ccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHH
Q 002606 155 VVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKI 222 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 222 (901)
++=..+....++..+..+ +-|.|.|..|+||||+|+.+.... ...| +.|..+...+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~~---~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWPC---VRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCCe---EEEEecCCCChhhc
Confidence 333344556676666543 468999999999999999999887 2222 34555555444333
No 322
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.094 Score=56.57 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
..++|+++|++|+||||++..++... . ...+ .+..+..... ....+-+...++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998876 2 2222 3445554322 1222333444445554432 12344455444433
Q ss_pred HHcc-CceEEEeccc
Q 002606 252 ILKK-KKFVLLLDDI 265 (901)
Q Consensus 252 ~l~~-kr~LlVlDdv 265 (901)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 3221 2347777876
No 323
>PRK08233 hypothetical protein; Provisional
Probab=95.19 E-value=0.017 Score=56.74 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998876
No 324
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.17 E-value=0.019 Score=57.87 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998876
No 325
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.16 E-value=0.017 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998774
No 326
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.18 Score=58.23 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..+.+-++|++|.|||.||+++++.. ...|-.+. .. . +... +-..+.......+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~----~----l~sk-------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS----E----LLSK-------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH----H----Hhcc-------ccchHHHHHHHHHHHH
Confidence 45589999999999999999999966 34443222 11 1 1110 1122333333344445
Q ss_pred HccCceEEEecccccccccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEecCChHHHh-h----hcCCccEEe
Q 002606 253 LKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTTRSEEVCG-W----MEAHQNFKV 327 (901)
Q Consensus 253 l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTtR~~~v~~-~----~~~~~~~~l 327 (901)
.+..++.|.+|+++.-..+..-.. ++.. ....-.....+.......+..||-||-...... . ..-...+.+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~---~~~~-~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v 407 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSE---DGSG-RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYV 407 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCC---chHH-HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeec
Confidence 567899999999954221111000 0000 000000000011111123444455554443211 1 123567899
Q ss_pred cCCChHHHHHHHHHHhcCCc
Q 002606 328 ACLSHNDAWELFQQKVGEET 347 (901)
Q Consensus 328 ~~L~~~ea~~Lf~~~~~~~~ 347 (901)
..-+.++..+.|+.+.....
T Consensus 408 ~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 408 PLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred CCCCHHHHHHHHHHHhcccC
Confidence 99999999999999887543
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.15 E-value=0.081 Score=49.58 Aligned_cols=26 Identities=42% Similarity=0.659 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44699999999999999999997765
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.12 E-value=0.12 Score=54.11 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCH--HHHHHHHHHHhCCCccc-cccccHHHH-HHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQI--EKIQESIGEKIGLLNDT-WKNRRIEQK-ALD 248 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 248 (901)
+.++|.++|++|+||||.+..++... . ..-..+.++.... +.. .+-+...++..+.+.-. ....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46799999999999999999998776 2 2223566665442 222 23344455555533210 011222222 223
Q ss_pred HHHHHccCceEEEeccc
Q 002606 249 IFRILKKKKFVLLLDDI 265 (901)
Q Consensus 249 l~~~l~~kr~LlVlDdv 265 (901)
+.....+..=++|+|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33333344457788876
No 329
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.12 E-value=0.042 Score=50.33 Aligned_cols=103 Identities=20% Similarity=0.346 Sum_probs=58.7
Q ss_pred CCCCCCccEEEecCCcccccCchHHhcCCCCCEEEccCCCccccC-cccccCCCCCCEEeccCCCCcccch-hhhccccc
Q 002606 549 MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFEL-PSDISRLVSLELLDLSNSRIRELPE-ELAALVNL 626 (901)
Q Consensus 549 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L 626 (901)
+..+++|+.+.+.. .+..+....|..++.|+.+.+.++ +..+ ...+.++..|+.+.+.+ .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 56777888888764 466777777888888888888775 3333 33567777888888865 5555544 35568888
Q ss_pred cccccccccCcCCCCccccCCCcccceeeccc
Q 002606 627 KCLNLEYTFDLAKIPWNLISNFSRLHVLRMFG 658 (901)
Q Consensus 627 ~~L~L~~~~~l~~lp~~~i~~l~~L~~L~l~~ 658 (901)
+.+++..+ +..++...+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 88887653 456666667776 788777654
No 330
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.11 E-value=0.086 Score=63.05 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=37.5
Q ss_pred CcccchhHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE---------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|-++.++.|.+.+.. .....+.++|+.|+|||++|+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999998888762 123578899999999999999998776
No 331
>PTZ00301 uridine kinase; Provisional
Probab=95.10 E-value=0.019 Score=57.26 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.09 E-value=0.083 Score=50.89 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCC--CC---eEEEEEeCCcC--CHHHHHHHHHHHhCCCccccccccHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTD--FD---FVIWVVVSKDL--QIEKIQESIGEKIGLLNDTWKNRRIEQK 245 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (901)
.-.+++|+|..|.|||||++.+........+. ++ .+.++ .+.. ....+.+.+.-. ... .-...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 45699999999999999999998765211111 11 12222 2322 112333333210 110 11222333
Q ss_pred HHHHHHHHccCceEEEeccccc
Q 002606 246 ALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 246 ~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
.-.+.+.+-.++=++++|+--.
T Consensus 99 rv~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCcc
Confidence 3445666667777889998643
No 333
>PRK06851 hypothetical protein; Provisional
Probab=95.09 E-value=0.39 Score=52.05 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=40.6
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD 216 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (901)
..-|.-.-.+.+. ++-.+++.|.|.+|+|||||+++++... . ...++..++-|.+.+
T Consensus 198 Tp~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a-~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 198 TPKGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA-E-ERGFDVEVYHCGFDP 254 (367)
T ss_pred CCCcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH-H-hCCCeEEEEeCCCCC
Confidence 3356555555554 3556899999999999999999999987 2 445666666555444
No 334
>PTZ00494 tuzin-like protein; Provisional
Probab=95.08 E-value=1.4 Score=47.88 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=95.1
Q ss_pred CCcccchhHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 152 EPTVVGQQSQLEQVWKCLVE---GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
...+|.|+++-..+.+.|.+ ..++++.+.|..|.||++|.+....+. . -..++|.+... ++-++.|++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 35689999988888777765 467899999999999999999877665 1 13567777654 455788889
Q ss_pred HhCCCccccccccHHHHHHHH---HHHHccCceEEEeccccccccccccc---ccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 229 KIGLLNDTWKNRRIEQKALDI---FRILKKKKFVLLLDDIWQRVDLVKVG---VPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~l---~~~l~~kr~LlVlDdv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
.++.+.-+.=.+-.+-..+.. .....++.-+||+-= .+-..+..+- ..+.... .
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDr-------------------R 500 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDC-------------------Q 500 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccc-------------------h
Confidence 998764221111122222222 222345555666521 1111111110 0111111 3
Q ss_pred CcEEEEecCChHHHhhh---cCCccEEecCCChHHHHHHHHHHh
Q 002606 303 ESKVVFTTRSEEVCGWM---EAHQNFKVACLSHNDAWELFQQKV 343 (901)
Q Consensus 303 gs~iiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 343 (901)
-|.|++----+.+.-.+ ..-..|-++.++-++|.+.-++..
T Consensus 501 lCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 501 ACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 46666654444332111 123568899999999999887754
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.24 Score=53.36 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccccccccHHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFR 251 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 251 (901)
+.+++.++|+.|+||||++..+.... ..+ -..+.+|++... ....+-++..++.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~- 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQ- 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHH-
Confidence 46799999999999999999988766 222 235666765432 2234556666666665432 2234555544343
Q ss_pred HHc--cCceEEEeccc
Q 002606 252 ILK--KKKFVLLLDDI 265 (901)
Q Consensus 252 ~l~--~kr~LlVlDdv 265 (901)
.++ +..=+|++|-.
T Consensus 279 ~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 279 YMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHhcCCCCEEEEECC
Confidence 332 33457778876
No 336
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.03 E-value=0.2 Score=53.98 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc-------cccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSS----TDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW-------KNRR 241 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 241 (901)
...++-|+|.+|+|||+++.+++... ... ..-..++||.....++.+.+. ++++.++...... ...+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 45789999999999999999987664 111 111379999998888887654 4455555432110 0111
Q ss_pred ---HHHHHHHHHHHHccC---ceEEEecccc
Q 002606 242 ---IEQKALDIFRILKKK---KFVLLLDDIW 266 (901)
Q Consensus 242 ---~~~~~~~l~~~l~~k---r~LlVlDdv~ 266 (901)
.....+.+.+.+... .-+||+|-+-
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSis 202 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLT 202 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 112334455555432 3489999883
No 337
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.01 E-value=0.054 Score=58.93 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEG--------------SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899998888886665531 23678999999999999999998886
No 338
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.13 Score=53.26 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC-Ccc-ccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL-LND-TWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~-~~~~~~~~~~~~~l~ 250 (901)
..+++=|+|+.|+||||+|.+++-.. +..-..++|+..-+.++++.+...-...+.. ... ........+.+..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45799999999999999999987776 4445589999999999887765433321211 000 011122233444444
Q ss_pred HHHccCceEEEeccc
Q 002606 251 RILKKKKFVLLLDDI 265 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv 265 (901)
+....+--|+|+|-|
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 544545669999998
No 339
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.98 E-value=0.1 Score=54.36 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 164 QVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 164 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+..+++.+.+..+|.|.|..|+|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445555678999999999999999999998886
No 340
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.95 E-value=0.037 Score=61.48 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999999988765 467899999999999999998876
No 341
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.95 E-value=0.038 Score=61.91 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=53.5
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEE-EEEeCCcCC-HHHHHHHHHHHhCCCccccccc
Q 002606 164 QVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVI-WVVVSKDLQ-IEKIQESIGEKIGLLNDTWKNR 240 (901)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~ 240 (901)
++++.+.. +.-....|+|++|+|||||++.+.+... ..+-++.+ .+-+.+... +.++.+.+-..+-.. ..+..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p 480 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRP 480 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCC
Confidence 44555543 4456889999999999999999998762 22333333 444555442 222322221111000 11111
Q ss_pred c-----HHHHHHHHHHHH--ccCceEEEecccc
Q 002606 241 R-----IEQKALDIFRIL--KKKKFVLLLDDIW 266 (901)
Q Consensus 241 ~-----~~~~~~~l~~~l--~~kr~LlVlDdv~ 266 (901)
. ...++-.+.+++ .++.+||++|++-
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1 112222333444 6799999999983
No 342
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.95 E-value=0.12 Score=53.17 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhc-ccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc-----cccccHHH
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFL-QSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT-----WKNRRIEQ 244 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 244 (901)
+.-..++|.|-.|+|||+|+.++.+... ..+++-+.++++-+++.. .+.++.+.+.+.-.+.... .++.....
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3456889999999999999999887651 012335678888888765 4566666665543222110 01111111
Q ss_pred -----HHHHHHHHH---ccCceEEEeccccc
Q 002606 245 -----KALDIFRIL---KKKKFVLLLDDIWQ 267 (901)
Q Consensus 245 -----~~~~l~~~l---~~kr~LlVlDdv~~ 267 (901)
.+-.+.+++ +++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 122334444 37899999999954
No 343
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.039 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998886
No 344
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.94 E-value=0.15 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...-+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999998876554
No 345
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.91 E-value=0.031 Score=52.43 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV 212 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (901)
..||.|+|.+|+||||||+.+.... . ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L-~--~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL-F--ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH-H--HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEec
Confidence 3689999999999999999999988 2 2334455553
No 346
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.91 E-value=0.038 Score=57.73 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHH
Q 002606 163 EQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKI 222 (901)
Q Consensus 163 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 222 (901)
..+++.+...+ +-+.++|+.|+|||++++...... . ...| ...-++.+...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHH
Confidence 45566666554 455899999999999999988765 2 1222 2344555554444433
No 347
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.89 E-value=0.089 Score=54.81 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 002606 156 VGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLND 235 (901)
Q Consensus 156 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 235 (901)
.|...+..+.+..+......+|.|.|..|+||||+++.+.+.. ...-..++.+.-...+.... + .+...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~----~-~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG----I-NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC----c-eEEEe---
Confidence 4544444333444444455789999999999999999887765 11112233332111111100 0 11111
Q ss_pred ccccccHHHHHHHHHHHHccCceEEEecccccccccc
Q 002606 236 TWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLV 272 (901)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 272 (901)
...........+...++..+=.|+++++.+.+...
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11111234556677788888899999997765433
No 348
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.88 E-value=1.3 Score=48.20 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeC-CcCCHHHHHHHHHHHhCCCcccc-ccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVS-KDLQIEKIQESIGEKIGLLNDTW-KNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 250 (901)
.+.||-.+|.-|.||||-|-++++.+. . ..+ .+.-|++. ..+..-+-++.++++.+.+.-.. .+.++.+.+..-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk-k-~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK-K-KGK-KVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH-H-cCC-ceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 467999999999999999999998882 2 222 23333322 22344566778888887654221 2334444444444
Q ss_pred HHHccCce-EEEeccc
Q 002606 251 RILKKKKF-VLLLDDI 265 (901)
Q Consensus 251 ~~l~~kr~-LlVlDdv 265 (901)
+..+...| ++|+|-.
T Consensus 176 ~~ak~~~~DvvIvDTA 191 (451)
T COG0541 176 EKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 44433322 4455543
No 349
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.86 E-value=0.024 Score=56.98 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 350
>PRK06762 hypothetical protein; Provisional
Probab=94.85 E-value=0.025 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 351
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.85 E-value=0.12 Score=52.76 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHHhc----C---CceEEEEEcCCCCcHHHHHHHHHhhhc
Q 002606 154 TVVGQQSQLEQVWKCLVE----G---SAGIIGLYGMGGVGKTTLLTHINNKFL 199 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~----~---~~~vi~I~G~gGiGKTtLa~~v~~~~~ 199 (901)
.++|..-.++.|+..+.+ + ..=+++.+|..|+||...++.+++...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 456766666666666653 2 445999999999999999999998873
No 352
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.84 E-value=0.024 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998776
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.027 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.|.+.|.+|+||||+|+++....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998877
No 354
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.79 E-value=0.053 Score=49.40 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 160 SQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 160 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++.+++-+.|.. ....+|.+.|.-|.||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455555543 245699999999999999999999886
No 355
>PTZ00035 Rad51 protein; Provisional
Probab=94.78 E-value=0.3 Score=52.82 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccc----CCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------ccccc
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQS----STDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRR 241 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 241 (901)
...++.|+|..|+|||||+..++-.. .. ...-..++|+.....++.+.+ ..++++++..... ....+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 45799999999999999999887544 21 112246779988777777764 4456666543211 01223
Q ss_pred HHHHHHHH---HHHHc-cCceEEEecccc
Q 002606 242 IEQKALDI---FRILK-KKKFVLLLDDIW 266 (901)
Q Consensus 242 ~~~~~~~l---~~~l~-~kr~LlVlDdv~ 266 (901)
.++....+ .+.+. .+--|||+|-+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 33333332 33333 345589999983
No 356
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.78 E-value=0.12 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 357
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.77 E-value=0.057 Score=55.13 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc------------c-c-
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT------------W-K- 238 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~-~- 238 (901)
..+++.|.|.+|+|||++|.++.....+. .-+.++||+...+ ...+.+.+. .++..... . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 45799999999999999999866544121 1345788877554 344444433 44432110 0 0
Q ss_pred ----cccHHHHHHHHHHHHcc-CceEEEecccc
Q 002606 239 ----NRRIEQKALDIFRILKK-KKFVLLLDDIW 266 (901)
Q Consensus 239 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 266 (901)
..+.++....+.+.++. +...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24566777777777765 55799999973
No 358
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.76 E-value=0.17 Score=50.15 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC-------CeEEEEEeCCcCCHHHHHHHHHHHhCCCcc--c---c----
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF-------DFVIWVVVSKDLQIEKIQESIGEKIGLLND--T---W---- 237 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~---~---- 237 (901)
..++.|.|++|+||||++..+..........| ..++|+..... ...+.+.+......... . .
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 35899999999999999999888773211121 36778776554 33333333322221100 0 0
Q ss_pred -----------ccccHHHHHHHHHHHHcc--CceEEEeccccc
Q 002606 238 -----------KNRRIEQKALDIFRILKK--KKFVLLLDDIWQ 267 (901)
Q Consensus 238 -----------~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 267 (901)
.........+.+.+.+.. +.-++|+|.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 000123345556666655 456999998843
No 359
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.75 E-value=0.12 Score=55.28 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.+.|+.|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999877
No 360
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.73 E-value=0.091 Score=58.08 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCC-HHHHHHHHHHHhCCCccc----ccccc-HH---
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQ-IEKIQESIGEKIGLLNDT----WKNRR-IE--- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~----~~~~~-~~--- 243 (901)
....++|+|..|+|||||++++++.. ..+.++++-+++... +.++.+..+..-++.... ..+.+ ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998765 224555566665543 345554444433222110 01111 11
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 --QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 --~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1122233443 58999999999943
No 361
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.71 E-value=0.24 Score=53.41 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---cCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------cccccH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQ---SSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-------WKNRRI 242 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 242 (901)
...++-|+|.+|+|||+++..++-.... ....-..++||+....|.++++. +|++.++...+. ....+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 4578899999999999999887754310 01122379999999998887764 567776654321 011233
Q ss_pred HHHHHHH---HHHH-ccCceEEEeccc
Q 002606 243 EQKALDI---FRIL-KKKKFVLLLDDI 265 (901)
Q Consensus 243 ~~~~~~l---~~~l-~~kr~LlVlDdv 265 (901)
++....+ ...+ ..+--|||+|-+
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 3333222 2223 335568999998
No 362
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.70 E-value=0.052 Score=50.33 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998775
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.69 E-value=0.13 Score=50.76 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHH
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQES 225 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (901)
++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999999877652 2234577887654 34444443
No 364
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.13 Score=52.24 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNK 197 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (901)
.-.+++|+|+.|.|||||.+.+..-
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999873
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.60 E-value=0.22 Score=51.80 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK 215 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (901)
..+++.|.|.+|+|||++|.++..... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 457999999999999999999866641 2234678888754
No 366
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.59 E-value=0.1 Score=61.76 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc---cccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT---WKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 249 (901)
..+++-|+|..|+||||||.+++... ...-..++|+.....++. ..++++++..+. ....+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45789999999999999998876654 223356799987777664 367777765432 1233445555555
Q ss_pred HHHHcc-CceEEEecccc
Q 002606 250 FRILKK-KKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l~~-kr~LlVlDdv~ 266 (901)
...++. +--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 555544 56689999984
No 367
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.59 E-value=0.095 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 368
>PRK03839 putative kinase; Provisional
Probab=94.56 E-value=0.029 Score=54.96 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999887
No 369
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.2 Score=54.98 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSS-TDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
..++|.++|+.|+||||.+..++....... .+-..+..+++... ......++..++.++.+.. ...+...+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999987762111 12235566665432 1223335666666666532 2233344433333
Q ss_pred HHHccCceEEEeccc
Q 002606 251 RILKKKKFVLLLDDI 265 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv 265 (901)
+ + ++.-++++|..
T Consensus 251 ~-~-~~~DlVLIDTa 263 (388)
T PRK12723 251 Q-S-KDFDLVLVDTI 263 (388)
T ss_pred H-h-CCCCEEEEcCC
Confidence 3 3 34558888887
No 370
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.55 E-value=0.14 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998754
No 371
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.55 E-value=0.14 Score=56.74 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHh-----CCCccccccccHH----
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKI-----GLLNDTWKNRRIE---- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~---- 243 (901)
.-..++|+|..|+|||||++.+.... .....+++..--...++.++........ +.-... ++....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 44689999999999999999887654 1222444443223334444444333322 110000 111111
Q ss_pred -HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 -QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 -~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1112233333 58999999999943
No 372
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.55 E-value=0.18 Score=50.71 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|.|..|+|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45699999999999999999998654
No 373
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.54 E-value=0.1 Score=57.67 Aligned_cols=90 Identities=23% Similarity=0.385 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc----ccccc-HHH-
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT----WKNRR-IEQ- 244 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~-~~~- 244 (901)
.....++|.|..|+|||||.+.+++.. .-+.++++-+++.. .+.++.+..+..-++.... ..+.+ ...
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 355689999999999999999998765 23466777777654 3444444433322221110 01111 111
Q ss_pred ----HHHHHHHHH--ccCceEEEecccc
Q 002606 245 ----KALDIFRIL--KKKKFVLLLDDIW 266 (901)
Q Consensus 245 ----~~~~l~~~l--~~kr~LlVlDdv~ 266 (901)
.+-.+.+++ +++++|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 111233333 6899999999994
No 374
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.50 E-value=0.092 Score=57.20 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=49.4
Q ss_pred CcccchhHHHHHHHHHHhc---------C-----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC---CeEEEEEeC-
Q 002606 153 PTVVGQQSQLEQVWKCLVE---------G-----SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF---DFVIWVVVS- 214 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~~- 214 (901)
..++|.++.++.+..++.. + ..+.|.++|+.|+|||++|+.+.... ...| +...|...+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 91 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhccCCc
Confidence 4689999999988877743 0 13678999999999999999998876 2333 322222221
Q ss_pred CcCCHHHHHHHHHHHh
Q 002606 215 KDLQIEKIQESIGEKI 230 (901)
Q Consensus 215 ~~~~~~~~~~~i~~~l 230 (901)
...+.+.+.+.+....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 1225556666665543
No 375
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.50 E-value=0.058 Score=53.20 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE
Q 002606 157 GQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV 212 (901)
Q Consensus 157 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (901)
.+..+-...++.|. ...++.+.|++|+|||.||....-+. -..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34455566677776 45699999999999999999988776 3458899888876
No 376
>PRK14527 adenylate kinase; Provisional
Probab=94.49 E-value=0.052 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|.|+|++|+||||+|+.+....
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 377
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.031 Score=54.22 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGE 228 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 228 (901)
..+|+|-||-|+||||||+.+.++. . |. ++.=.+.+++-.+..++++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999988 2 22 222234455445555555443
No 378
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.46 E-value=0.034 Score=54.96 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 379
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.45 E-value=0.27 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...|-|++..|.||||.|..+.-+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra 29 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA 29 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH
Confidence 3578888889999999999887766
No 380
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.44 E-value=0.091 Score=48.89 Aligned_cols=42 Identities=31% Similarity=0.327 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHH
Q 002606 177 IGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQE 224 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (901)
|.++|+.|+|||+||+.++... .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6789999999999999998876 21 234467777777777654
No 381
>PRK06217 hypothetical protein; Validated
Probab=94.42 E-value=0.061 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 382
>PRK05922 type III secretion system ATPase; Validated
Probab=94.41 E-value=0.12 Score=57.05 Aligned_cols=91 Identities=15% Similarity=0.296 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCcccc----ccc-cHH--
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDTW----KNR-RIE-- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~-~~~-- 243 (901)
..-..++|+|..|+|||||.+.+.+.. ..+....+-++.. ..+.+.+.+............ .+. ...
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 345679999999999999999998664 1233333333332 233444444443332221110 111 111
Q ss_pred ---HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 ---QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 ---~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++++|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122233444 58999999999943
No 383
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.41 E-value=0.13 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
||.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 384
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.40 E-value=0.076 Score=52.32 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCc
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLN 234 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 234 (901)
.|+|+|-||+||||+|..+...... ++.| .+.-|....+++. .+++|...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCCh-------HHhcCCCC
Confidence 6899999999999999996666522 2223 4555666665544 44556553
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.40 E-value=0.059 Score=50.04 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK 215 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~ 215 (901)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 34555555666554
No 386
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.40 E-value=0.087 Score=53.18 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=37.4
Q ss_pred HHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 161 QLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 161 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
...++++.+.. ++..+|+|.|++|.|||||+-.+.... ..+++=-.++=|..|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCccc
Confidence 34455555543 467899999999999999999998888 333333345555556565544443
No 387
>PRK08149 ATP synthase SpaL; Validated
Probab=94.39 E-value=0.18 Score=55.76 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCcc-----ccccccH----
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLND-----TWKNRRI---- 242 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~---- 242 (901)
.-..++|+|..|+|||||+..+++.. .-+.++...+... .++.++............. ..+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999987654 2233333444433 3455565666554322110 0011111
Q ss_pred -HHHHHHHHHHH--ccCceEEEeccccc
Q 002606 243 -EQKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 243 -~~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
...+..+.+++ +++++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11222233333 58999999999943
No 388
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.39 E-value=0.26 Score=50.27 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=34.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
...++.|.|..|+||||+|.++..... +.. ..+++++.. .+..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 346999999999999999877665541 122 446666633 3455666665 34443
No 389
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.38 E-value=0.043 Score=55.66 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.|.|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 390
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.37 E-value=0.12 Score=57.69 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc----cccccH----
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT----WKNRRI---- 242 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 242 (901)
+.-..++|.|.+|+|||||+.++.... . +.+-+.++++-+++.. .+.++.+.+...-.+.... ..+.+.
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 355689999999999999999988876 2 2356777887777654 4456666665433221110 011111
Q ss_pred --HHHHHHHHHHH---ccCceEEEecccc
Q 002606 243 --EQKALDIFRIL---KKKKFVLLLDDIW 266 (901)
Q Consensus 243 --~~~~~~l~~~l---~~kr~LlVlDdv~ 266 (901)
...+-.+.+++ +++++|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11223344554 3799999999994
No 391
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.36 E-value=0.079 Score=61.84 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=57.4
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+... ...++..+|..- ...+...+++.+..++|.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 45799999888888777655 4788999999999999999987762 335677888655 344777788888776653
No 392
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.18 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++.++|++|+||||++.++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.33 E-value=0.031 Score=49.33 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|-|+|.+|+|||++|+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988777
No 394
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.32 E-value=0.082 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999997764
No 395
>PRK05439 pantothenate kinase; Provisional
Probab=94.30 E-value=0.3 Score=51.64 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356699999999999999999987765
No 396
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.15 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 397
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.28 E-value=0.16 Score=57.23 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW---KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (901)
...++.|.|.+|+|||||+.++..... ..-..++|++..+. ...+.. -++.++...+.. ...+.+++...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 456999999999999999999988762 22346788875443 333322 245565432211 122333333322
Q ss_pred HHHHccCceEEEeccc
Q 002606 250 FRILKKKKFVLLLDDI 265 (901)
Q Consensus 250 ~~~l~~kr~LlVlDdv 265 (901)
. +.+.-++|+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 235568999998
No 398
>PRK04040 adenylate kinase; Provisional
Probab=94.23 E-value=0.041 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 399
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.20 E-value=0.2 Score=55.79 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc----cccc-cHH--
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT----WKNR-RIE-- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~-~~~-- 243 (901)
+.-..++|.|.+|+|||||+.++.... ... +=+.++++-+++.. .+.++.+.+...-.+.... ..+. ...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 355689999999999999999987766 211 12456777776654 4556666666543222110 0111 111
Q ss_pred ---HHHHHHHHHH---ccCceEEEecccc
Q 002606 244 ---QKALDIFRIL---KKKKFVLLLDDIW 266 (901)
Q Consensus 244 ---~~~~~l~~~l---~~kr~LlVlDdv~ 266 (901)
..+-.+.+++ +++++||++||+-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1222344554 6799999999994
No 400
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.27 Score=54.32 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=47.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..+++++|+.|+||||++..+.... ........+..+.... .....+-+....+.++.+... ..+..+... ....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~--v~~~~dl~~-al~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS--IKDIADLQL-MLHE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec--CCCHHHHHH-HHHH
Confidence 4799999999999999999887754 1122223444454332 123334455566666655321 222333322 2233
Q ss_pred HccCceEEEeccc
Q 002606 253 LKKKKFVLLLDDI 265 (901)
Q Consensus 253 l~~kr~LlVlDdv 265 (901)
++++ -++++|-.
T Consensus 267 l~~~-d~VLIDTa 278 (420)
T PRK14721 267 LRGK-HMVLIDTV 278 (420)
T ss_pred hcCC-CEEEecCC
Confidence 4444 35666655
No 401
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.15 E-value=0.034 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 402
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.14 E-value=0.033 Score=55.53 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997765
No 403
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.13 E-value=0.15 Score=59.71 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=52.3
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
.+++|.++.++.+...+..+. .+.++|+.|+||||+|+.+.+.. . ...|...+++. ....+...++..++.+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 467999988888877776653 55599999999999999999877 2 22344444333 2233556667777776653
No 404
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.13 E-value=0.46 Score=54.43 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=72.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC-----CeEEEEEeCC---------------cC-C-HHHHHHHHHHHh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDF-----DFVIWVVVSK---------------DL-Q-IEKIQESIGEKI 230 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F-----~~~~wv~~~~---------------~~-~-~~~~~~~i~~~l 230 (901)
.-..|+|+|+.|+|||||.+.+........+.. -.+.++.-.. .+ + .....+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 446899999999999999999976552111111 1122222111 00 1 134445555555
Q ss_pred CCCcccc----ccccHHHH-HHHHHHHHccCceEEEecccccccccc---cccccCCCCCCCcccccccCCCCCCCCCCC
Q 002606 231 GLLNDTW----KNRRIEQK-ALDIFRILKKKKFVLLLDDIWQRVDLV---KVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 231 ~~~~~~~----~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
+.+.+.. ..-+..+. .-.+...+-.++=+||||.=-+.-|.+ .+...+.+.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--------------------- 485 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--------------------- 485 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---------------------
Confidence 5443221 11222232 233445566788899999875543332 223333322
Q ss_pred CcEEEEecCChHHHhhhcCCccEEecC
Q 002606 303 ESKVVFTTRSEEVCGWMEAHQNFKVAC 329 (901)
Q Consensus 303 gs~iiiTtR~~~v~~~~~~~~~~~l~~ 329 (901)
...||+.|.|+....... ..++.+.+
T Consensus 486 ~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 486 EGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred CCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 256788888887766543 44555553
No 405
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.11 E-value=0.17 Score=56.59 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
.+++.++|++|+||||++..+.... .....-..+..|+....- ...+.+....+.++.+.. ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 3699999999999999999987766 201223456667654321 112233444444554432 12233344433332
Q ss_pred HccCceEEEeccc
Q 002606 253 LKKKKFVLLLDDI 265 (901)
Q Consensus 253 l~~kr~LlVlDdv 265 (901)
+.+ .=+||+|..
T Consensus 297 ~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 LRD-CDVILIDTA 308 (424)
T ss_pred hCC-CCEEEEeCC
Confidence 332 457888866
No 406
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.10 E-value=1.8 Score=46.25 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=34.6
Q ss_pred cEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHH
Q 002606 324 NFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 324 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 372 (901)
++++++++.+|+..++.......-......-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755432221223445677777779998543
No 407
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.10 E-value=0.06 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|+|.+|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45699999999999999999987654
No 408
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.09 E-value=0.16 Score=52.27 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhcccCCCCCeE-EEEEeCCcC-CHHHHHHHHHHHhCCCcc-----ccccccHH-
Q 002606 173 SAGIIGLYGMGGVGKTTLL-THINNKFLQSSTDFDFV-IWVVVSKDL-QIEKIQESIGEKIGLLND-----TWKNRRIE- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~- 243 (901)
.-+.++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++.+.+...-..... ..++....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4568999999999999996 5565443 22333 566666654 455666666543222110 00111111
Q ss_pred --------HHHHHHHHHHccCceEEEeccccc
Q 002606 244 --------QKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 --------~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
..+++++. +++.+|+|+||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChHH
Confidence 12233322 58999999999944
No 409
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.09 E-value=0.049 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 410
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.09 E-value=0.13 Score=56.73 Aligned_cols=90 Identities=22% Similarity=0.353 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccc-----cccccHHH--
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDT-----WKNRRIEQ-- 244 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~-- 244 (901)
.-..++|+|..|+|||||++.+.... . . +..+.+.+.+ ...+.++.+..+..-++.... .++.....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999887664 1 1 2223333333 334445555544433222110 01111111
Q ss_pred ---HHHHHHHHH--ccCceEEEeccccc
Q 002606 245 ---KALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 245 ---~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
.+-.+.+++ +++++|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234444 57999999999943
No 411
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.09 E-value=0.047 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 412
>PRK00625 shikimate kinase; Provisional
Probab=94.08 E-value=0.041 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.++||.|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 413
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.0052 Score=58.72 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=40.8
Q ss_pred CccCcccCCeeecccCCCceeEEecccccccccccccccEEEeecCCCCCC--CchhhccCCccEEEEeccccc
Q 002606 725 GLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRVVVIDLCIGLKD--LTFLVFASNLKSIEVRSCFAM 796 (901)
Q Consensus 725 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l 796 (901)
.+..++.+++|.+.+|..+.+..++... ...++|+.|+|++|+.+++ +-++..++||+.|.|.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4556667777777777665533333222 1466777777777776665 345666677777666665443
No 414
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.06 E-value=0.095 Score=53.65 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=42.5
Q ss_pred HHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHH
Q 002606 163 EQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQE 224 (901)
Q Consensus 163 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 224 (901)
.+++..+.. ++..+|+|.|.+|+|||||.-.+..++ ...++=-.++=|..|.+++--.++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccc
Confidence 344454443 567799999999999999999998888 3344444556666676666555543
No 415
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.06 E-value=0.18 Score=55.94 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc-----cccccHH---
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT-----WKNRRIE--- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~--- 243 (901)
....++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-++.... .++....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45689999999999999999987653 22344444444433 4455555555443332110 0111111
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 --QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 --~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+..+.+++ +++++|+++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 1112233333 68999999999943
No 416
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.04 E-value=0.22 Score=53.02 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccc-----cccccHH--
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDT-----WKNRRIE-- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-- 243 (901)
.....++|+|..|.|||||++.+.+.. . -+..+..-+.. .-++.++.......-++.... .++....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 345689999999999999999988765 1 23334444443 334555555555443322110 0111111
Q ss_pred ---HHHHHHHHHH--ccCceEEEecccc
Q 002606 244 ---QKALDIFRIL--KKKKFVLLLDDIW 266 (901)
Q Consensus 244 ---~~~~~l~~~l--~~kr~LlVlDdv~ 266 (901)
..+-.+.+++ +++.+|+++||+-
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1112223333 6899999999984
No 417
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.04 E-value=0.069 Score=52.47 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV 212 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (901)
.++|.|+|+.|+|||||++.+.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999887 56776555554
No 418
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.2 Score=51.55 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=39.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-------eEEEEEeCCc-CCHHHHHHHHHHHhCCCccc
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFD-------FVIWVVVSKD-LQIEKIQESIGEKIGLLNDT 236 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~-------~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 236 (901)
++.|+|.||+|||||+-..+=.....++.|. .+++|++-.. .++-.-++.+..+++++...
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 4556799999999999876544423334443 5666665432 34555677888888877543
No 419
>PF13245 AAA_19: Part of AAA domain
Probab=94.02 E-value=0.14 Score=41.79 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.+++.|.|++|+|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45788889999999996555544444
No 420
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.00 E-value=0.25 Score=55.02 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhhhccc-----CCCCCeEEEEEeCCcCCHHHHHHHHHHHhC-CCccc-----ccc
Q 002606 172 GSAGIIGLYGMGGVGKTTLL-THINNKFLQS-----STDFDFVIWVVVSKDLQIEKIQESIGEKIG-LLNDT-----WKN 239 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~-----~~~ 239 (901)
+.-..++|.|..|+|||+|| -.+.+.. .+ .++-..++++-+++......-+...+++-+ +.... .++
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 34568999999999999997 5556653 11 124457788888887654333444444444 22110 011
Q ss_pred ccHHH-----HHHHHHHHH--ccCceEEEeccccc
Q 002606 240 RRIEQ-----KALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 240 ~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
....+ ..-.+-+++ +++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11111 111222333 58999999999954
No 421
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.98 E-value=0.055 Score=48.39 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcccCCCCC
Q 002606 177 IGLYGMGGVGKTTLLTHINNKFLQSSTDFD 206 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~~~~~~~F~ 206 (901)
|.|+|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6789999999999999999887 55664
No 422
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.95 E-value=0.077 Score=51.01 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=33.1
Q ss_pred ccchhHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 155 VVGQQSQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+||....+.++++.+.. ....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887764 333556699999999999999998865
No 423
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.94 E-value=0.039 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998776
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.93 E-value=0.25 Score=55.57 Aligned_cols=87 Identities=21% Similarity=0.310 Sum_probs=48.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..|++++|+.|+||||.+.+++... ..+..-..+..|.... .....+-++...+.++.+... ..+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--VKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--cCCchhHHHHH-Hh
Confidence 4799999999999999999998776 2222222455555432 123344455556666654321 11222222222 23
Q ss_pred HccCceEEEeccc
Q 002606 253 LKKKKFVLLLDDI 265 (901)
Q Consensus 253 l~~kr~LlVlDdv 265 (901)
++++ -.+++|-.
T Consensus 332 L~d~-d~VLIDTa 343 (484)
T PRK06995 332 LRNK-HIVLIDTI 343 (484)
T ss_pred ccCC-CeEEeCCC
Confidence 4444 46677765
No 425
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.92 E-value=0.077 Score=57.79 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=52.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHH---HHHHhCCCccccccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQES---IGEKIGLLNDTWKNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~~~~~~~~l 249 (901)
....|.|.|+.|+||||+++.+.+.. .......++. +.++. +-.... +..+-. ...........+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~--E~~~~~~~~~i~q~e------vg~~~~~~~~~l 188 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPI--EYVHRNKRSLINQRE------VGLDTLSFANAL 188 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCCh--hhhccCccceEEccc------cCCCCcCHHHHH
Confidence 45789999999999999999988765 2333334443 22221 111000 000000 011122345557
Q ss_pred HHHHccCceEEEeccccccccccc
Q 002606 250 FRILKKKKFVLLLDDIWQRVDLVK 273 (901)
Q Consensus 250 ~~~l~~kr~LlVlDdv~~~~~~~~ 273 (901)
...|+..+=.|++|.+.+.+.+..
T Consensus 189 ~~~lr~~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 189 RAALREDPDVILIGEMRDLETVEL 212 (343)
T ss_pred HHhhccCCCEEEEeCCCCHHHHHH
Confidence 778888889999999977655543
No 426
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.91 E-value=0.052 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...|.|+|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 427
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.90 E-value=0.056 Score=52.15 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=31.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCeEEEEEeCCcC
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSS-TDFDFVIWVVVSKDL 217 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~~~~~ 217 (901)
..++.+.|+.|+|||.+|+.+.... . +.....+-+..+.-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhccc
Confidence 4678899999999999999999888 3 455556666655433
No 428
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.89 E-value=0.28 Score=55.36 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW---KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (901)
...++.|.|.+|+|||||+.++.....+ .-..++|++..+. ..++.. -++.++...+.. ...+.++ +
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~----I 162 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQ----I 162 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHH----H
Confidence 4579999999999999999999777621 2235778875433 333222 233454432211 1223333 3
Q ss_pred HHHHcc-CceEEEeccc
Q 002606 250 FRILKK-KKFVLLLDDI 265 (901)
Q Consensus 250 ~~~l~~-kr~LlVlDdv 265 (901)
.+.++. +.-++|+|.+
T Consensus 163 ~~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 163 CANIEEENPQACVIDSI 179 (454)
T ss_pred HHHHHhcCCcEEEEecc
Confidence 333333 5568999998
No 429
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.88 E-value=0.14 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNK 197 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (901)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999998876
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.092 Score=50.09 Aligned_cols=84 Identities=24% Similarity=0.280 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC--CHHHHHHHHHHHhCCCccccccccHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL--QIEKIQESIGEKIGLLNDTWKNRRIEQKALDIF 250 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 250 (901)
+-.+++|+|..|.|||||++.+.... ......+++.-.... .... ....++... +-...+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 34699999999999999999998765 123444444321111 1111 111121100 0112233333455
Q ss_pred HHHccCceEEEeccccc
Q 002606 251 RILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 251 ~~l~~kr~LlVlDdv~~ 267 (901)
+.+...+-++++|+.-.
T Consensus 93 ~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 93 RALLLNPDLLLLDEPTS 109 (157)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 66666778999999854
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.78 E-value=0.21 Score=50.43 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998776
No 432
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.78 E-value=0.1 Score=54.09 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.|.++|++|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998877
No 433
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.44 Score=51.15 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---ccccHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW---KNRRIEQKALDI 249 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 249 (901)
.-.+|.|-|-+|||||||.-++..+.. .+. .+.+|+--+. .. -.+--+++++.+.+.. .+.+.++ +
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA-~~~---~vLYVsGEES--~~-QiklRA~RL~~~~~~l~l~aEt~~e~----I 160 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA-KRG---KVLYVSGEES--LQ-QIKLRADRLGLPTNNLYLLAETNLED----I 160 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH-hcC---cEEEEeCCcC--HH-HHHHHHHHhCCCccceEEehhcCHHH----H
Confidence 457999999999999999999999883 222 6777764433 22 2234466777544321 2333333 3
Q ss_pred HHHH-ccCceEEEecccc
Q 002606 250 FRIL-KKKKFVLLLDDIW 266 (901)
Q Consensus 250 ~~~l-~~kr~LlVlDdv~ 266 (901)
.+.+ +.++-++|+|-+.
T Consensus 161 ~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 161 IAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred HHHHHhcCCCEEEEeccc
Confidence 3333 3578899999983
No 434
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.18 Score=50.27 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=34.8
Q ss_pred cccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++=|=.++++++.+...- +..+-|.++|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344567777777775432 355678899999999999999999886
No 435
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.74 E-value=0.098 Score=47.48 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD 216 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~ 216 (901)
.+-|.|.|-+|+||||+|..+.... . .-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhH
Confidence 4568899999999999999998654 2 346666643
No 436
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.74 E-value=0.054 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998775
No 437
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.27 Score=58.69 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=64.9
Q ss_pred cccchhHHHHHHHHHHhcC--------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHH
Q 002606 154 TVVGQQSQLEQVWKCLVEG--------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQES 225 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (901)
.++|-++.+..|.+.+... +.....+.|+.|+|||-||+.+.... .+..+..+-|..+. ..+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh-
Confidence 4678888888888877641 34577889999999999999998877 45555555554433 222
Q ss_pred HHHHhCCCccccccccHHHHHHHHHHHHccCce-EEEecccccc
Q 002606 226 IGEKIGLLNDTWKNRRIEQKALDIFRILKKKKF-VLLLDDIWQR 268 (901)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 268 (901)
+.+-.+.+. .+.+. +....+.+.+++++| +|+||||...
T Consensus 633 vskligsp~-gyvG~---e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPP-GYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCc-ccccc---hhHHHHHHHHhcCCceEEEEechhhc
Confidence 333333322 11222 223367788888887 6678999643
No 438
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.70 E-value=0.32 Score=47.18 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
....|-|+|..|-||||.|.-+.-+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 34689999999999999999877665
No 439
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.70 E-value=0.098 Score=55.42 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=41.0
Q ss_pred CcccchhHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVE------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..|+|.++.++++++.+.. ..-+|+.++|+-|.||||||+.+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999864 356899999999999999999998776
No 440
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.60 E-value=0.21 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999997753
No 441
>PRK05973 replicative DNA helicase; Provisional
Probab=93.60 E-value=0.44 Score=48.35 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESI 226 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 226 (901)
...++.|.|.+|+|||++|.++..... + .-..+++++.... ..++.+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 456899999999999999999877652 2 2345667765443 44554443
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.58 E-value=0.12 Score=62.28 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNK 197 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~ 197 (901)
+.+++.|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4479999999999999999998765
No 443
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.58 E-value=0.071 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|+|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 444
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.57 E-value=0.064 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 445
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.56 E-value=0.1 Score=56.06 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+||.++.+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999888777777666678899999999999999997654
No 446
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.56 E-value=0.65 Score=50.21 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=53.5
Q ss_pred HHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccc
Q 002606 162 LEQVWKCLVEG----SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDT 236 (901)
Q Consensus 162 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 236 (901)
...+..++.++ ..++|.++|+.|+||||-..+++..+ .....=..+..|+...- ....+-++.-++-++++..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~- 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE- 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-
Confidence 34444444443 47899999999999996555554444 11223345666765432 2344555566666666643
Q ss_pred cccccHHHHHHHHHHHHccCceEEEeccc
Q 002606 237 WKNRRIEQKALDIFRILKKKKFVLLLDDI 265 (901)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv 265 (901)
-..+..++...+ ..+++.+ +|.+|=+
T Consensus 265 -vv~~~~el~~ai-~~l~~~d-~ILVDTa 290 (407)
T COG1419 265 -VVYSPKELAEAI-EALRDCD-VILVDTA 290 (407)
T ss_pred -EecCHHHHHHHH-HHhhcCC-EEEEeCC
Confidence 223344444332 3344443 4555655
No 447
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.54 E-value=0.25 Score=54.78 Aligned_cols=94 Identities=27% Similarity=0.382 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCcccc----cccc-HH--
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDTW----KNRR-IE-- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~-~~-- 243 (901)
..-..++|.|.+|+|||+|+.++.... . +.+-+.++++-+++.. .+.++.+.+...-.+..... .+.+ ..
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 345689999999999999999988775 2 2234678888887665 34556666554322221100 1111 11
Q ss_pred ---HHHHHHHHHH---ccCceEEEeccccc
Q 002606 244 ---QKALDIFRIL---KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 ---~~~~~l~~~l---~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++++|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1223344554 46999999999943
No 448
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.54 E-value=0.054 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 449
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.51 E-value=0.036 Score=32.86 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=15.5
Q ss_pred CCCEEEccCCCccccCcccccCC
Q 002606 578 SLKVLSLSHNEVLFELPSDISRL 600 (901)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~i~~l 600 (901)
+|++|||++| .++.+|++|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4788888888 566787776653
No 450
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.50 E-value=0.13 Score=56.46 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 161 QLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 161 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+.+++.+.......+.|.|.||+|||++.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666667789999999999999999998887
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.49 E-value=0.44 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+++++|+.|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998887
No 452
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=1.8 Score=49.75 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=90.7
Q ss_pred ccchhHHHHHHHHHHhcC-------------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHH
Q 002606 155 VVGQQSQLEQVWKCLVEG-------------SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEK 221 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~~-------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~ 221 (901)
+-|..+.++-+.+.+.-. -..-|.++|++|.|||-||-++.... ..-+|+|..+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCH----H
Confidence 445666666565555421 23358899999999999999997765 1335666554 2
Q ss_pred HHHHHHHHhCCCccccccccHHHHHHHHHHHHccCceEEEecccccccccccccccCCCCCCCcccccccC--CCCCCCC
Q 002606 222 IQESIGEKIGLLNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVG--DPLPSPE 299 (901)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 299 (901)
++. +.+| .+++...+.+.+.-.-++|++.||..++.. ..-.+..++..+.+... ..+....
T Consensus 737 lL~---KyIG--------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiA------PkRGhDsTGVTDRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 737 LLS---KYIG--------ASEQNVRDLFERAQSAKPCILFFDEFDSIA------PKRGHDSTGVTDRVVNQLLTELDGAE 799 (952)
T ss_pred HHH---HHhc--------ccHHHHHHHHHHhhccCCeEEEeccccccC------cccCCCCCCchHHHHHHHHHhhcccc
Confidence 222 2222 222333333333445699999999985421 10011111111100000 0000111
Q ss_pred CCCCcEEEE-ecCChHH----HhhhcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCCh
Q 002606 300 KSSESKVVF-TTRSEEV----CGWMEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLP 369 (901)
Q Consensus 300 ~~~gs~iii-TtR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 369 (901)
+-.|.-|+- |||-.-+ .+...-+..+.-..-++.+-.+.|+..+........-+ -+.++.+.+|.-
T Consensus 800 gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~t 870 (952)
T KOG0735|consen 800 GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFT 870 (952)
T ss_pred ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCc
Confidence 125666665 5554322 12111233444455566777788877665433223333 356667777664
No 453
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.49 E-value=0.13 Score=59.56 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=38.3
Q ss_pred cccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 154 TVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 154 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+++|.+..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999888776655667899999999999999998753
No 454
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.48 E-value=3.2 Score=44.01 Aligned_cols=167 Identities=15% Similarity=0.072 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHhhhcc-------cCCCCCeEEEEEe-CCcCCHHHHHHHHHHHhCC
Q 002606 162 LEQVWKCLVEGS-AGIIGLYGMGGVGKTTLLTHINNKFLQ-------SSTDFDFVIWVVV-SKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 162 ~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 232 (901)
++.+.+.+..+. ..+.-++|..|.||+++|..+.+.... ...+-+.+.++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445556665554 456679999999999999998776511 0111112333321 1222232222 23332221
Q ss_pred CccccccccHHHHHHHHHHHHccCceEEEeccccccc--ccccccccCCCCCCCcccccccCCCCCCCCCCCCcEEEEec
Q 002606 233 LNDTWKNRRIEQKALDIFRILKKKKFVLLLDDIWQRV--DLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSSESKVVFTT 310 (901)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~iiiTt 310 (901)
.. .-.+.+=++|+||+.... ....+...+.... .++.+|++|
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp-------------------~~t~~il~~ 127 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPP-------------------KDTYFLLTT 127 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCC-------------------CCeEEEEEe
Confidence 11 001456688888885432 2333444443332 456666544
Q ss_pred -CChHHHhh-hcCCccEEecCCChHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHcCCChhHHHH
Q 002606 311 -RSEEVCGW-MEAHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALIT 374 (901)
Q Consensus 311 -R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 374 (901)
....+... ......+++.++++++..+.+... + . + .+.+..++...+|.--|+..
T Consensus 128 ~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 128 KNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 44444433 345678999999999999877754 2 1 1 12366667677763344444
No 455
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.46 E-value=0.35 Score=53.48 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCC--CCC---------eEEEEEeCCcCCHHHHHHHHHHHhC-CCccc---
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSST--DFD---------FVIWVVVSKDLQIEKIQESIGEKIG-LLNDT--- 236 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~--- 236 (901)
+.-+.++|.|-+|+|||||+.++.+.. .... ..| .++++-+++.....+.+...+..-+ +....
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 345689999999999999999988776 2100 012 5677778887666666666666555 22111
Q ss_pred --cccccHHH-----HHHHHHHHH---ccCceEEEeccccc
Q 002606 237 --WKNRRIEQ-----KALDIFRIL---KKKKFVLLLDDIWQ 267 (901)
Q Consensus 237 --~~~~~~~~-----~~~~l~~~l---~~kr~LlVlDdv~~ 267 (901)
.++..... .+-.+.+++ +++++|+++||+-.
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 01111111 122244444 46999999999943
No 456
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.44 E-value=0.32 Score=53.81 Aligned_cols=91 Identities=24% Similarity=0.311 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCcc-----ccccccHHH-
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLND-----TWKNRRIEQ- 244 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 244 (901)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+++.. .+.+.+......-..... ..+....+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999887654 33445555555543 344555554321111100 001111111
Q ss_pred ----HHHHHHHHH--ccCceEEEeccccc
Q 002606 245 ----KALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 245 ----~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
.+-.+.+++ +++++|+++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 122233333 58999999999943
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.44 E-value=0.45 Score=56.31 Aligned_cols=88 Identities=18% Similarity=0.290 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCC-cCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSK-DLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRI 252 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 252 (901)
..||+++|+.|+||||.+.++.... ........+..+.... .....+.++...+.++.+.. ...+..++...+ +.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al-~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFAL-AA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHH-HH
Confidence 4699999999999999999988766 2122223455555432 11244566667777776542 222444444333 34
Q ss_pred HccCceEEEecccc
Q 002606 253 LKKKKFVLLLDDIW 266 (901)
Q Consensus 253 l~~kr~LlVlDdv~ 266 (901)
++++. +|++|=.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 45543 77777663
No 458
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.43 E-value=0.12 Score=54.97 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=34.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHH
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQES 225 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 225 (901)
.+++.+.|.||+||||+|....-...+ .+ ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-SG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-cC--CcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999986655521 22 44777777666666655544
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.43 E-value=0.051 Score=29.85 Aligned_cols=16 Identities=56% Similarity=0.889 Sum_probs=6.4
Q ss_pred CCCEEeccCCCCcccc
Q 002606 602 SLELLDLSNSRIRELP 617 (901)
Q Consensus 602 ~L~~L~l~~~~i~~lp 617 (901)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.39 E-value=0.057 Score=51.06 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997764
No 461
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.39 E-value=0.22 Score=55.62 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC--eEEEEEeCCcC-CHHHHHHHHHHHhCCCccc-----cccccHH-
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFD--FVIWVVVSKDL-QIEKIQESIGEKIGLLNDT-----WKNRRIE- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~- 243 (901)
.-..++|.|..|+|||||+.++.+.. ...+.+. .++++-+++.. .+.++++.+...-.+.... .+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 45689999999999999999988865 2221121 55666666654 4556666665433222110 0111111
Q ss_pred ----HHHHHHHHHH---ccCceEEEeccccc
Q 002606 244 ----QKALDIFRIL---KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 ----~~~~~l~~~l---~~kr~LlVlDdv~~ 267 (901)
..+..+.+++ +++++|+++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1122344444 47899999999943
No 462
>PRK15453 phosphoribulokinase; Provisional
Probab=93.38 E-value=0.39 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|+|.|.+|+||||+|+.+...+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 463
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.37 E-value=0.16 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+..|+|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999998777766655
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.36 E-value=0.061 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998754
No 465
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.34 E-value=0.11 Score=55.97 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=40.0
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.+||-++.+..+...+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999998888888777777799999999999999997765
No 466
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.32 E-value=0.11 Score=49.07 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 160 SQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 160 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.++++.+.+.. +++.++|.+|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 446677777654 799999999999999999998764
No 467
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.31 E-value=0.46 Score=50.58 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHH
Q 002606 164 QVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIG 227 (901)
Q Consensus 164 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~ 227 (901)
++++.+.. ..-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. .+.++++++-
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 34554443 345689999999999999999988764 33568888887754 3445555543
No 468
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.62 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.-.+-+|.|+.|+||||||..+..+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998775
No 469
>PRK13949 shikimate kinase; Provisional
Probab=93.27 E-value=0.068 Score=51.57 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
-|.|+|+.|+||||+++.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998887
No 470
>PRK13947 shikimate kinase; Provisional
Probab=93.26 E-value=0.071 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.24 E-value=0.52 Score=54.01 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---
Q 002606 163 EQVWKCLVEG--SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTW--- 237 (901)
Q Consensus 163 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 237 (901)
..+-+.|..+ ..+++.|.|.+|+|||||+.++..... ..-+.+++++.-+ +..++...+ +.++...+.+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3344444443 567999999999999999999988762 2335567776544 344555443 5555432210
Q ss_pred ----------ccccHHHHHHHHHHHHcc-CceEEEeccc
Q 002606 238 ----------KNRRIEQKALDIFRILKK-KKFVLLLDDI 265 (901)
Q Consensus 238 ----------~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 265 (901)
.....++.+..+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 112346677777777754 5568999998
No 472
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=1 Score=44.88 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=40.5
Q ss_pred cccCCCC--CcccchhHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 146 VDERPTE--PTVVGQQSQLEQVWKCLVE-------------GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 146 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++++|++ +++=|-++.++++++.+.- ...+-|..+|++|.|||-+|+.++...
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4455554 3467889999999988742 245678899999999999999987765
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.18 E-value=0.079 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHIN 195 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~ 195 (901)
...+++|+|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 474
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.18 E-value=0.14 Score=48.05 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.5
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 170 VEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 170 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
......||-+.|.+|+||||+|..++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 34566799999999999999999999887
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.18 E-value=0.076 Score=53.29 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...+|+|+|++|+||||||+.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 476
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.17 E-value=0.097 Score=52.65 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINN 196 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~ 196 (901)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 477
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.56 Score=53.68 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=34.7
Q ss_pred CcccchhHHHH---HHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLE---QVWKCLVEG---------SAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~---~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++-|.++.++ ++++.|.+. -++=|.++|++|.|||.||+++..+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 35678776555 556666652 13468899999999999999999887
No 478
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.39 Score=48.86 Aligned_cols=91 Identities=21% Similarity=0.352 Sum_probs=57.2
Q ss_pred CcccchhHHHHHHHHHHh---------cC---CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHH
Q 002606 153 PTVVGQQSQLEQVWKCLV---------EG---SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIE 220 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~ 220 (901)
+++.|.+..++.+.+... .+ .-+-|.++|++|.||+.||++|+.+. ... |.+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nST-----FFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NST-----FFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCc-----eEEeehH----
Confidence 356788888888777542 12 34678999999999999999998876 222 3444443
Q ss_pred HHHHHHHHHhCCCccccccccHHHHHHHHHHHH-ccCceEEEeccccc
Q 002606 221 KIQESIGEKIGLLNDTWKNRRIEQKALDIFRIL-KKKKFVLLLDDIWQ 267 (901)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~ 267 (901)
++.... + . ..+.++..+.+.- .+|+-+|.+|.|+.
T Consensus 201 DLvSKW---m--------G-ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DLVSKW---M--------G-ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHH---h--------c-cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 121111 1 1 1233444444433 46889999999953
No 479
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.15 E-value=0.49 Score=45.51 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=44.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccccccccHHHHHHHHHHHHcc
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDTWKNRRIEQKALDIFRILKK 255 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 255 (901)
++.|.|..|+|||++|.++.... ...++++.-.+.++.+ ..+.|.+--......|.. .+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t---~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRT---IETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceE---eecHHHHHHHHHh
Confidence 36799999999999999986542 2356677666666543 333333311111222222 2222334444422
Q ss_pred --CceEEEeccc
Q 002606 256 --KKFVLLLDDI 265 (901)
Q Consensus 256 --kr~LlVlDdv 265 (901)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999998
No 480
>PRK14530 adenylate kinase; Provisional
Probab=93.14 E-value=0.075 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.|.|+|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998776
No 481
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.12 E-value=0.22 Score=55.46 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=52.0
Q ss_pred CCceEEEEEcCCCCcHHHHHH-HHHhhhcccCCCCCeE-EEEEeCCcC-CHHHHHHHHHHHhCCCccc-----cccccHH
Q 002606 172 GSAGIIGLYGMGGVGKTTLLT-HINNKFLQSSTDFDFV-IWVVVSKDL-QIEKIQESIGEKIGLLNDT-----WKNRRIE 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~ 243 (901)
+.-..++|.|..|+||||||. .+.+.. .-+.+ +++-+++.. .+.++.+.+...-.+.... .++....
T Consensus 139 grGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~ 213 (485)
T CHL00059 139 GRGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATL 213 (485)
T ss_pred ccCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHH
Confidence 345689999999999999965 454442 23433 777777654 4556666655433222110 0111111
Q ss_pred ---------HHHHHHHHHHccCceEEEeccccc
Q 002606 244 ---------QKALDIFRILKKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 ---------~~~~~l~~~l~~kr~LlVlDdv~~ 267 (901)
..+++++. +++++|+|+||+-.
T Consensus 214 r~~ap~~a~aiAEyfr~--~G~~VLlv~DdlTr 244 (485)
T CHL00059 214 QYLAPYTGAALAEYFMY--RGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHHHhhHHHHHHH--cCCCEEEEEcChhH
Confidence 12233332 58999999999954
No 482
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.11 E-value=0.29 Score=54.07 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcC-CHHHHHHHHHHHhCCCccc-----cccccHH---
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDL-QIEKIQESIGEKIGLLNDT-----WKNRRIE--- 243 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~--- 243 (901)
.-..++|+|..|+|||||++.+.+.. ..+..+...+.+.. .+.++.+.....-.+.... .+.....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887654 12344445555543 3444555444332221110 0111111
Q ss_pred --HHHHHHHHHH--ccCceEEEecccc
Q 002606 244 --QKALDIFRIL--KKKKFVLLLDDIW 266 (901)
Q Consensus 244 --~~~~~l~~~l--~~kr~LlVlDdv~ 266 (901)
..+-.+.+++ +++++|+++||+-
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1122233333 5899999999994
No 483
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.10 E-value=0.24 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 484
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.08 E-value=0.1 Score=52.43 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 167 KCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 167 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+.+...+.++|+++|..|+|||||..++....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33445689999999999999999999998875
No 485
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.02 E-value=0.19 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002606 176 IIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 486
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.02 E-value=0.081 Score=47.58 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998776
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.97 E-value=0.081 Score=50.81 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|.|.|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.97 E-value=0.12 Score=53.91 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCC
Q 002606 173 SAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGL 232 (901)
Q Consensus 173 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 232 (901)
..+++.|+|.+|+|||++|.++.... ......++||+..+. ..++.+...+ ++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 56799999999999999999998887 344888999987764 4445544443 543
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.96 E-value=0.078 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 490
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.94 E-value=0.077 Score=49.77 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002606 176 IIGLYGMGGVGKTTLLTHIN 195 (901)
Q Consensus 176 vi~I~G~gGiGKTtLa~~v~ 195 (901)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 491
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.90 E-value=0.084 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002606 177 IGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 177 i~I~G~gGiGKTtLa~~v~~~~ 198 (901)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998776
No 492
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.90 E-value=0.1 Score=51.97 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 493
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.89 E-value=0.17 Score=57.84 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=40.9
Q ss_pred ccchhHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEE
Q 002606 155 VVGQQSQLEQVWKCLVE-----GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVV 212 (901)
Q Consensus 155 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 212 (901)
++--.+-++++..||.+ ...+++.+.|++|+||||.++.++++. .|+.+-|..
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 34445567888888865 235799999999999999999998886 467777865
No 494
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.43 Score=52.82 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=52.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCc-CCHHHHHHHHHHHhCCCccc----ccccc-----
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKD-LQIEKIQESIGEKIGLLNDT----WKNRR----- 241 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~----- 241 (901)
+.-..++|+|..|+|||||++.++... + . ...++. -+.+. ..+.+.++..+..-++.... ..+.+
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~--~-~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ 228 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA-K--A-DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQL 228 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-C--C-CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHH
Confidence 345688999999999999999998765 2 1 122332 23333 56666666665543322110 01111
Q ss_pred -HHHHHHHHHHHH--ccCceEEEeccccc
Q 002606 242 -IEQKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 242 -~~~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
....+..+.+++ ++++.||++||+-.
T Consensus 229 ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 229 RAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 111122233333 57999999999954
No 495
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.86 E-value=0.12 Score=55.02 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHH
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQ 223 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 223 (901)
+++.+.|.||+||||+|....-...+ + -..+.-++.....+..+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~--G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-R--GKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-T--TS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-C--CCCeeEeecCCCccHHHHh
Confidence 68999999999999999887766622 2 2345666555544444443
No 496
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.85 E-value=0.13 Score=55.16 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=36.7
Q ss_pred CcccchhHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 153 PTVVGQQSQLEQVWKCLVEGSAGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3579999999888765554444568999999999999999986654
No 497
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.82 E-value=0.44 Score=53.03 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCeEEEEEeCCcCCHHHHHHHHHHHhCCCccc-----cccccHH---
Q 002606 172 GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDFVIWVVVSKDLQIEKIQESIGEKIGLLNDT-----WKNRRIE--- 243 (901)
Q Consensus 172 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~--- 243 (901)
..-..++|.|..|+|||||++.+.... . . -..+++..--+...+.++.+.+...-++.... .+.....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 355789999999999999999997655 1 1 12333333223334555555554443222110 0111111
Q ss_pred --HHHHHHHHHH--ccCceEEEeccccc
Q 002606 244 --QKALDIFRIL--KKKKFVLLLDDIWQ 267 (901)
Q Consensus 244 --~~~~~l~~~l--~~kr~LlVlDdv~~ 267 (901)
..+-.+.+++ +++.+|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122233333 58999999999943
No 498
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.79 E-value=0.1 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998775
No 499
>PRK06761 hypothetical protein; Provisional
Probab=92.78 E-value=0.19 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 175 GIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 175 ~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999887
No 500
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.78 E-value=0.099 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 002606 174 AGIIGLYGMGGVGKTTLLTHINNKF 198 (901)
Q Consensus 174 ~~vi~I~G~gGiGKTtLa~~v~~~~ 198 (901)
...|.|+|+.|+||||+|+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999998876
Done!