Query 002606
Match_columns 901
No_of_seqs 363 out of 4120
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 16:46:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002606.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1323-1327//hhsearch_pdb/002606hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 401.4 20.3 316 150-506 125-471 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 350.8 25.3 311 152-506 123-452 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 332.3 18.8 287 153-500 128-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.0 25.6 306 152-504 123-450 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 195.0 18.1 313 526-865 443-827 (876)
6 3rgz_A Protein brassinosteroid 1.0 1 1 191.5 15.3 154 530-691 393-549 (768)
7 4eco_A Uncharacterized protein 1.0 1 1 191.4 15.4 140 707-862 434-584 (636)
8 3rgz_A Protein brassinosteroid 1.0 1 1 189.0 17.5 93 758-862 630-723 (768)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 186.3 19.0 288 529-861 49-341 (597)
10 4fmz_A Internalin; leucine ric 1.0 1 1 183.9 21.2 289 525-859 38-326 (347)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=401.41 Aligned_cols=316 Identities=14% Similarity=0.136 Sum_probs=256.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCHHHHHHHHHH--HHCCCCCCCCEEEEEEECCCC--CHHHH
Q ss_conf 89986235357899999998159---942999991899808899999996--310149999869999918967--98999
Q 002606 150 PTEPTVVGQQSQLEQVWKCLVEG---SAGIIGLYGMGGVGKTTLLTHINN--KFLQSSTDFDFVIWVVVSKDL--QIEKI 222 (901)
Q Consensus 150 ~~~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~l 222 (901)
|..+..|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.+ +...+
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHH
T ss_conf 997760784179999999872515789628999869999889999999984069-8746699579999789878799999
Q ss_pred HHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999998089852-----102324889999999997238-4278750212322211014568999987654322489999
Q 002606 223 QESIGEKIGLLND-----TWKNRRIEQKALDIFRILKKK-KFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLP 296 (901)
Q Consensus 223 ~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (901)
+..|+.+++.... .....+.+++...+.+.|+++ |+||||||||+..++ .+ +. .
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~-------------- 263 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-E-------------- 263 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-H--------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----CC-C--------------
T ss_conf 9999999853755345555331469999999999976898489999799971441-54----32-6--------------
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999939999659857884303-7761881589968799999987269866999228999999998909971389999
Q 002606 297 SPEKSSESKVVFTTRSEEVCGWME-AHQNFKVACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITI 375 (901)
Q Consensus 297 ~~~~~~~~~iiiTtR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~~ 375 (901)
+||+||||||++.++..++ ...+|++++|+.++||+||.+.++... .++++++++.+|+++|+|+||||+++
T Consensus 264 -----~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 264 -----LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp -----TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----CCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf -----99889997497799997088973898999898999999998744899--85568999999999959983999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHH-----------HHCCCCCCCCCCHH
Q ss_conf 9876049995789999999850244457998651125765126999530224665-----------33147998310288
Q 002606 376 GRAMACKKRPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTIKSCLL-----------YCSLYPEDCLISKE 444 (901)
Q Consensus 376 ~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-----------~~a~fp~~~~i~~~ 444 (901)
|+.++.+ + |+.. +.+....... ..+++..++.+||+.||. +.|.||+ |||+||+++.|+
T Consensus 337 g~~l~~~-~---w~~~-~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-- 406 (549)
T 2a5y_B 337 FKSCEPK-T---FEKM-AQLNNKLESR--GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP-- 406 (549)
T ss_dssp HTTCCSS-S---HHHH-HHHHHHHHHH--CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--
T ss_pred HHHHCCC-H---HHHH-HHHHHHHHCC--CHHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE--
T ss_conf 9984434-4---8999-8757876136--477789897516202267-999997526522336743235608997666--
Q ss_pred HHHHHHHHC--CCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCC---CCCCEEEHHHHHHHHHHHHHHC
Q ss_conf 999998762--9876532-222100156679999982023313---8994652268999999986200
Q 002606 445 NLIDCWIGE--GLLNESV-KFGVQKEGYHIVGILVRACLLEEV---GDDDVKLHDVIRDMALWIACDI 506 (901)
Q Consensus 445 ~li~~w~a~--g~~~~~~-~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~~Hdli~~~a~~~~~~~ 506 (901)
+..|+|+ ||+...+ ....++.+. ++++|+++||++.. ...+|+|||+||+||++++.+.
T Consensus 407 --i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 407 --VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp --HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred --EEEEEEECCCEECCCCCCCCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf --53311013550026778999999999-999998758836714798049996769999999998898
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=350.82 Aligned_cols=311 Identities=20% Similarity=0.252 Sum_probs=250.1
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCCC--HHHHHHHH
Q ss_conf 98623535789999999815--99429999918998088999999963101499-998699999189679--89999999
Q 002606 152 EPTVVGQQSQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQSST-DFDFVIWVVVSKDLQ--IEKIQESI 226 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~--~~~l~~~i 226 (901)
.+.||||++++++|.+.|.. ++.++|+|+||||+||||||+++|++...... .++.++|+++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 86412579999999999861358877799991898888899999860756788627881799997885726799999999
Q ss_pred HHHHCCCCCC--CCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9980898521--02324889999999997238--4278750212322211014568999987654322489999999999
Q 002606 227 GEKIGLLNDT--WKNRRIEQKALDIFRILKKK--KFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEKSS 302 (901)
Q Consensus 227 ~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (901)
+..++..... ....+.+++...++..+.++ |+||||||||+..++..+ . +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~-------------------~ 256 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------D-------------------N 256 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------C-------------------S
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------C-------------------C
T ss_conf 9986553033347887778999999999735678789999567997788763-------6-------------------8
Q ss_pred CCEEEEECCCHHHHHH-HCCCCCEEECC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 9399996598578843-03776188158-996879999998726986699922899999999890997138999998760
Q 002606 303 ESKVVFTTRSEEVCGW-MEAHQNFKVAC-LSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGRAMA 380 (901)
Q Consensus 303 ~~~iiiTtR~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~~~~~l~ 380 (901)
|++||||||++.++.. +.....+++.+ |++++|++||...++... +.+++.+.+|+++|+|+||||+++|+.|+
T Consensus 257 ~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~ 332 (1249)
T 3sfz_A 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLR 332 (1249)
T ss_dssp SCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 97899992778998763488437982588887889999998657981----34838899999984997799999999862
Q ss_pred CCCCHHHHHHHHHHHHCCCCCC-C----CCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 4999578999999985024445-7----9986511257651269995302246653314799831028899999876298
Q 002606 381 CKKRPEEWKYAIEVLRTSSSQF-A----GLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIGEGL 455 (901)
Q Consensus 381 ~~~~~~~w~~~~~~l~~~~~~~-~----~~~~~i~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a~g~ 455 (901)
.+. ..|...++.+....... . ...+.+..++.+||+.|++ +.|.||+|||+||+++.|+...++.+|.++
T Consensus 333 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-- 407 (1249)
T 3sfz_A 333 DFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-- 407 (1249)
T ss_dssp HSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC--
T ss_pred CCH--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC--
T ss_conf 480--579999999865044303465564467799999989986799-999999972813799751899999885898--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---CEEEHHHHHHHHHHHHHHC
Q ss_conf 76532222100156679999982023313899---4652268999999986200
Q 002606 456 LNESVKFGVQKEGYHIVGILVRACLLEEVGDD---DVKLHDVIRDMALWIACDI 506 (901)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~---~~~~Hdli~~~a~~~~~~~ 506 (901)
.+.+..++++|+++||++....+ +|+||+++|++++..+.++
T Consensus 408 ---------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ---------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---------HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf ---------889999999997446338963798118996689999987450678
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=332.33 Aligned_cols=287 Identities=16% Similarity=0.234 Sum_probs=229.2
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8623535789999999815-994299999189980889999999631014999986-99999189679899999999980
Q 002606 153 PTVVGQQSQLEQVWKCLVE-GSAGIIGLYGMGGVGKTTLLTHINNKFLQSSTDFDF-VIWVVVSKDLQIEKIQESIGEKI 230 (901)
Q Consensus 153 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l 230 (901)
+..|||+.++++|.++|.. +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87789289999999997435897189997699966799999999714-98874899389998289999999999999998
Q ss_pred CCCC---C-CC-----CCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8985---2-10-----2324889999999997---238427875021232221101456899998765432248999999
Q 002606 231 GLLN---D-TW-----KNRRIEQKALDIFRIL---KKKKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSP 298 (901)
Q Consensus 231 ~~~~---~-~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (901)
+... . .. ...+.++....+.+.+ .++|+||||||||+...|..+.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----------------------- 263 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----------------------- 263 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----------------------
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-----------------------
T ss_conf 622721022001346799999999999999998504788799871868189998647-----------------------
Q ss_pred CCCCCCEEEEECCCHHHHHHHCCCCCEEEC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 999993999965985788430377618815------89968799999987269866999228999999998909971389
Q 002606 299 EKSSESKVVFTTRSEEVCGWMEAHQNFKVA------CLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLAL 372 (901)
Q Consensus 299 ~~~~~~~iiiTtR~~~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai 372 (901)
.||+||||||++.++..+.....|+++ +|+.+|||+||.+..+.. . .++..++ |+|+||||
T Consensus 264 ---pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLAL 330 (1221)
T 1vt4_I 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRL 330 (1221)
T ss_dssp ---SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHH
T ss_pred ---CCEEEEEECCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC----H---HHHHHHH---HCCCHHHH
T ss_conf ---982999944373799866897089946865568969999999999974998----8---9999999---69899999
Q ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHH-HHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99998760499-957899999998502444579986511257651269995302-2466533147998310288999998
Q 002606 373 ITIGRAMACKK-RPEEWKYAIEVLRTSSSQFAGLGNEVYPLLKFSYDNLPNDTI-KSCLLYCSLYPEDCLISKENLIDCW 450 (901)
Q Consensus 373 ~~~~~~l~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cf~~~a~fp~~~~i~~~~li~~w 450 (901)
+++|+.|+.+. +.+.|+.. ..+.+..++.+||+.||+ +. |.||++||+||+++.|+.+.++.+|
T Consensus 331 kLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW 396 (1221)
T 1vt4_I 331 SIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIW 396 (1221)
T ss_dssp HHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHCC-------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99999984889979998669-------------861899999999984889-9999999997177999987799999876
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCEEEHHHHHHHHH
Q ss_conf 7629876532222100156679999982023313-8994652268999999
Q 002606 451 IGEGLLNESVKFGVQKEGYHIVGILVRACLLEEV-GDDDVKLHDVIRDMAL 500 (901)
Q Consensus 451 ~a~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~-~~~~~~~Hdli~~~a~ 500 (901)
+++| ++.+..++++|+++||++.. ...+|+|||++++++.
T Consensus 397 ~aeG----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 397 FDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp CSSC----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred CCCC----------HHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHC
T ss_conf 6778----------8999999999996198898689998986099999856
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.03 Aligned_cols=306 Identities=22% Similarity=0.304 Sum_probs=236.1
Q ss_pred CCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCCC-CEEEEEEECCCCCHHHHHHH--
Q ss_conf 98623535789999999815--994299999189980889999999631014-9999-86999991896798999999--
Q 002606 152 EPTVVGQQSQLEQVWKCLVE--GSAGIIGLYGMGGVGKTTLLTHINNKFLQS-STDF-DFVIWVVVSKDLQIEKIQES-- 225 (901)
Q Consensus 152 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~l~~~-- 225 (901)
.+.||||+.+++++.+.+.. ++.++|+|+||||+||||||.+++++. .. ...| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHHH
T ss_conf 8714052999999999986036888469997699898899999998355-6888528996599977877-6688999999
Q ss_pred -HHHHHCCCC--CCCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -999808985--210232488999999999723--842787502123222110145689999876543224899999999
Q 002606 226 -IGEKIGLLN--DTWKNRRIEQKALDIFRILKK--KKFVLLLDDIWQRVDLVKVGVPLPSPQKSSESKVKVGDPLPSPEK 300 (901)
Q Consensus 226 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (901)
+...++... ......+.+.....+...+.+ +++||||||+|+...+..+ .
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~------------------ 255 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------D------------------ 255 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------C------------------
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------C------------------
T ss_conf 999985035565567998899999999999706799869998589987999876-------3------------------
Q ss_pred CCCCEEEEECCCHHHHHHHCCCCCEEE---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999399996598578843037761881---58996879999998726986699922899999999890997138999998
Q 002606 301 SSESKVVFTTRSEEVCGWMEAHQNFKV---ACLSHNDAWELFQQKVGEETLNCHPEILELARTVAKECGGLPLALITIGR 377 (901)
Q Consensus 301 ~~~~~iiiTtR~~~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLai~~~~~ 377 (901)
.+++||||||+..++..+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+||||.++|+
T Consensus 256 -~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~ 329 (591)
T 1z6t_A 256 -SQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGA 329 (591)
T ss_dssp -SSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCCEEEEECCCCHHHHHCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -7986999898817777348-98268615889998999999998718983----10459999999995898379999999
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCCC-C----CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 760499957899999998502444-5----79986511257651269995302246653314799831028899999876
Q 002606 378 AMACKKRPEEWKYAIEVLRTSSSQ-F----AGLGNEVYPLLKFSYDNLPNDTIKSCLLYCSLYPEDCLISKENLIDCWIG 452 (901)
Q Consensus 378 ~l~~~~~~~~w~~~~~~l~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~a~fp~~~~i~~~~li~~w~a 452 (901)
.++.. ...|...++.+...... . ......+..++..||+.||+ +.|.||+++|+||+++.|+...+...|.+
T Consensus 330 ~l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~ 406 (591)
T 1z6t_A 330 LLRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDM 406 (591)
T ss_dssp HHHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTC
T ss_pred HHHCC--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf 98448--4359999999988689876511465437899999999986899-99999997455679985089999999665
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC---CCCCEEEHHHHHHHHHHHHH
Q ss_conf 29876532222100156679999982023313---89946522689999999862
Q 002606 453 EGLLNESVKFGVQKEGYHIVGILVRACLLEEV---GDDDVKLHDVIRDMALWIAC 504 (901)
Q Consensus 453 ~g~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~~Hdli~~~a~~~~~ 504 (901)
+ .+.+..++.+|+++||++.. ....|+||+++|++++....
T Consensus 407 ~-----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 407 E-----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp C-----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred C-----------HHHHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 8-----------8999999999985958688548985679976899999986535
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=194.97 Aligned_cols=313 Identities=12% Similarity=0.134 Sum_probs=201.1
Q ss_pred CCCCCCCCEEEEEECCCCCC------------------CCC-CC--CCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEEC
Q ss_conf 42233451799910476100------------------136-77--8997328990188664559057724998979981
Q 002606 526 DVREWEKVRRLSLMENQIKV------------------ILG-MP--RCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSL 584 (901)
Q Consensus 526 ~~~~~~~lr~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 584 (901)
....+++++.|++++|.+.. +|. +. .+++|+.|++.+|.+....+..+..+++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 87569998789796886788746532233222222445874440255999778987189887527387737999899989
Q ss_pred CCCCCCC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6888654--4750016998-------99978513887732353--33303535500254544768888110389966552
Q 002606 585 SHNEVLF--ELPSDISRLV-------SLELLDLSNSRIRELPE--ELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHV 653 (901)
Q Consensus 585 ~~~~~~~--~lp~~i~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 653 (901)
++|..+. .+|..++.+. +|++|++++|.+..+|. .+.++++|+.|++++|. +..+| . ++.+++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCH-H-HCCCCCCEE
T ss_conf 68987656646177875233015568831998228947761872355158988989897998-25621-2-247985007
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHCCCC----------------------------C
Q ss_conf 1113664458987883233773118899-7578998516300022111310----------------------------0
Q 002606 654 LRMFGNAIRSGSFDGDELMVKELLGLKH-LEVLSFTLRSSHALKSFLTSHQ----------------------------L 704 (901)
Q Consensus 654 L~l~~~~~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~~~----------------------------~ 704 (901)
|++.+|.+.. .+..+..+++ |+.|++..+....++....... .
T Consensus 600 L~Ls~N~l~~--------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 600 LKLDYNQIEE--------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp EECCSSCCSC--------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred EECCCCCCCC--------CHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf 9871871250--------35877525114989998499787476445225567778897708847886432000000135
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCC--CCCCCCCCEEEEECCCCCCCCCH-HH-
Q ss_conf 013513575334797322137657445771521368995067844436643--31356621897413788788811-01-
Q 002606 705 RSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQ--QFCFQSLRVVVIDLCIGLKDLTF-LV- 780 (901)
Q Consensus 705 ~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~-l~- 780 (901)
...++.|.+..+..+.++...+..+++|+.|.++++ .+..++........ ...+++|+.|.|++| .++.+|. +.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGST
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCCCCCCCEEECCCC-CCCCCHHHHHH
T ss_conf 797688983199688659788713898899989899-6885496784555334321487158988899-78665277624
Q ss_pred -CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC------CCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf -138966798832634431023574568522235899777635661457------6545412589878998556854477
Q 002606 781 -FASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAG------LPNLKSIYWKPLPFSHLKEMSVFNC 853 (901)
Q Consensus 781 -~l~~L~~L~L~~c~~i~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~~~~L~~L~i~~C 853 (901)
.+++|+.|+|++|. +..++. ....+++|+.|+|++ +.-...++.....+++|+.|++++|
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCCCCCCEEEECCCC-CCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 427986989908997-876105------------6615999889988799776656324448688836998788988799
Q ss_pred CCCCCCCCCCCC
Q ss_conf 688688999854
Q 002606 854 DKLKKLPLDSNT 865 (901)
Q Consensus 854 ~~L~~Lp~~~~~ 865 (901)
++..+|....+
T Consensus 817 -~L~~Ip~~l~~ 827 (876)
T 4ecn_A 817 -DIRKVDEKLTP 827 (876)
T ss_dssp -CCCBCCSCCCS
T ss_pred -CCCCCCHHHCC
T ss_conf -78740876628
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=191.48 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=88.6
Q ss_pred CCCCEEEEEECCCCCC-CCC-CCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 3451799910476100-136-77899732899018866455905772499897998168886544750016998999785
Q 002606 530 WEKVRRLSLMENQIKV-ILG-MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLELLD 607 (901)
Q Consensus 530 ~~~lr~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~~L~ 607 (901)
...++.+.+.+|.+.. +|. +..+++|+.|++.+|.+....+..+..++.|++|++++|.....+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 47761898977846542487775689879898958846685467774499889898978815471897882877732999
Q ss_pred CCCCCCC-CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCEEE
Q ss_conf 1388773-235333303535500254544768888110389966552111366445898788323377311889975789
Q 002606 608 LSNSRIR-ELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEVLS 686 (901)
Q Consensus 608 l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~ 686 (901)
+++|.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|++|++.+|.+.+. .+..+..+++|+.|+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGN-------IPAELGDCRSLIWLD 544 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEE-------CCGGGGGCTTCCEEE
T ss_pred ECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCC-------CCHHHCCCCCCCEEE
T ss_conf 0199513758878816998998975399518968768-85689999898978943374-------887770889899898
Q ss_pred EEECC
Q ss_conf 98516
Q 002606 687 FTLRS 691 (901)
Q Consensus 687 l~~~~ 691 (901)
+..+.
T Consensus 545 Ls~N~ 549 (768)
T 3rgz_A 545 LNTNL 549 (768)
T ss_dssp CCSSE
T ss_pred CCCCC
T ss_conf 98884
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=191.43 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=55.9
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCC--CCCCCCCCEEEEECCCCCCCCCH-HH--C
Q ss_conf 3513575334797322137657445771521368995067844436643--31356621897413788788811-01--1
Q 002606 707 CTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQ--QFCFQSLRVVVIDLCIGLKDLTF-LV--F 781 (901)
Q Consensus 707 ~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--~~~~~~L~~L~L~~c~~l~~l~~-l~--~ 781 (901)
.++.+.+..+..+.++...+..+++|+.|.+.++. +..++........ ...+++|+.|+++++. ++.+|. +. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCCCCCCCCEEECCCCC-CCCCCHHHHHCC
T ss_conf 88889772796686787887158988989897997-8873978840440012214773389896993-881685453445
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC------CCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 38966798832634431023574568522235899777635661457------654541258987899855685447768
Q 002606 782 ASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAG------LPNLKSIYWKPLPFSHLKEMSVFNCDK 855 (901)
Q Consensus 782 l~~L~~L~L~~c~~i~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~------~~~L~~l~~~~~~~~~L~~L~i~~C~~ 855 (901)
+++|+.|++++|. ++.++. ....+++|+.|+|++ +.-...++.....+++|+.|++++|.
T Consensus 512 l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~- 577 (636)
T 4eco_A 512 LPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND- 577 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred CCCCCEEECCCCC-CCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-
T ss_conf 8876989898998-877682------------35308887878898886656673121273778569987889898994-
Q ss_pred CCCCCCC
Q ss_conf 8688999
Q 002606 856 LKKLPLD 862 (901)
Q Consensus 856 L~~Lp~~ 862 (901)
++.+|..
T Consensus 578 l~~ip~~ 584 (636)
T 4eco_A 578 IRKVNEK 584 (636)
T ss_dssp CCBCCSC
T ss_pred CCCCCHH
T ss_conf 7705976
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=188.98 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCCCCCCCC-HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 35662189741378878881-10113896679883263443102357456852223589977763566145765454125
Q 002606 758 CFQSLRVVVIDLCIGLKDLT-FLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIY 836 (901)
Q Consensus 758 ~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~i~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~ 836 (901)
.+++|+.|+++++.....+| .++.+++|+.|++++|.....++. .+..+++|+.|+|+++.--..+|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH------------HHHCCCCCCEEECCCCCCCCCCC
T ss_conf 335665797858801555877884141578784868803887896------------78477789989897880238688
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 89878998556854477688688999
Q 002606 837 WKPLPFSHLKEMSVFNCDKLKKLPLD 862 (901)
Q Consensus 837 ~~~~~~~~L~~L~i~~C~~L~~Lp~~ 862 (901)
.....+++|+.|++++|+--..+|..
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 67757887897879688155608996
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=186.33 Aligned_cols=288 Identities=15% Similarity=0.142 Sum_probs=158.5
Q ss_pred CCCCCEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf 33451799910476100136--778997328990188664559057724998979981688865447-500169989997
Q 002606 529 EWEKVRRLSLMENQIKVILG--MPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFEL-PSDISRLVSLEL 605 (901)
Q Consensus 529 ~~~~lr~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~i~~l~~L~~ 605 (901)
.+.+++.+.+.++.+..+|. +..+++|++|++.+|.+..+++..|..+++|++|+|++| .+..+ |..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCE
T ss_conf 6788618983389778769898802899768989899799989578607898888989799-089989788758999988
Q ss_pred EECCCCCCCCCCHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCE
Q ss_conf 85138877323533-33035355002545447688881103899665521113664458987883233773118899757
Q 002606 606 LDLSNSRIRELPEE-LAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEV 684 (901)
Q Consensus 606 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 684 (901)
|++++|.+..+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.+.. +..+++|+.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~~ 196 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLFH 196 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC----------GGGCTTCSE
T ss_pred EEEECCCCCCCCHHHHCCCCCCCEEEEECCC-CCCCCHHHHHCCCCCCEEECCCCCCCCCC----------HHHHHHHHH
T ss_conf 9743899997787876469887889846896-89877555522875737889688788768----------566014665
Q ss_pred EEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCE
Q ss_conf 89985163000221113100013513575334797322137657445771521368995067844436643313566218
Q 002606 685 LSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRV 764 (901)
Q Consensus 685 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 764 (901)
|.+..+....+. ....++.+.+..+....++.. ..++|+.|.+.++. +.. +.+. ..+++|+.
T Consensus 197 L~l~~n~l~~l~-------~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~-l~~--~~~l-----~~l~~L~~ 258 (597)
T 3oja_B 197 ANVSYNLLSTLA-------IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNN-LTD--TAWL-----LNYPGLVE 258 (597)
T ss_dssp EECCSSCCSEEE-------CCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSC-CCC--CGGG-----GGCTTCSE
T ss_pred HHCCCCCCCCCC-------CCCHHHEEECCCCCCCCCCCC---CCCCCCEEECCCCC-CCC--CHHH-----CCCCCCCE
T ss_conf 420147443335-------773042034467855655665---57878889898999-999--7566-----25898888
Q ss_pred EEEECCCCCCCC-CHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 974137887888-1101138966798832634431023574568522235899777635661457654541258987899
Q 002606 765 VVIDLCIGLKDL-TFLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIYWKPLPFS 843 (901)
Q Consensus 765 L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~i~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~ 843 (901)
|+|+++...... ..+..+++|+.|++++|. +..++. ....+|+|+.|+|+++ .+..++.....++
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~ 324 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN-HLLHVERNQPQFD 324 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCC------------CCCCCCCCCEEECCCC-CCCCCCCCCCCCC
T ss_conf 7897996588797785075588888997998-887774------------3246998838989899-8885582101489
Q ss_pred CCCEEEECCCCCCCCCCC
Q ss_conf 855685447768868899
Q 002606 844 HLKEMSVFNCDKLKKLPL 861 (901)
Q Consensus 844 ~L~~L~i~~C~~L~~Lp~ 861 (901)
+|+.|++.+| ++..+|+
T Consensus 325 ~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 325 RLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp TCSEEECCSS-CCCCCCC
T ss_pred CCCEEECCCC-CCCCCCH
T ss_conf 8898989899-7898692
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=1.00 E-value=1 Score=183.91 Aligned_cols=289 Identities=20% Similarity=0.236 Sum_probs=174.1
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34223345179991047610013677899732899018866455905772499897998168886544750016998999
Q 002606 525 QDVREWEKVRRLSLMENQIKVILGMPRCPHLLTLFLNNNVKLRISDGFLQYMSSLKVLSLSHNEVLFELPSDISRLVSLE 604 (901)
Q Consensus 525 ~~~~~~~~lr~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~i~~l~~L~ 604 (901)
.....+++++.+.+.++.+..++.+..+++|+.|++.+|.+..+++ +..+++|++|++++| .+..+| .+..+++|+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred CCCHHCCCCCEEEEECCCCCCCHHHHHCCCCCEEECCCCCCCCCHH--HHCCCCCCEEECCCC-CCCCCH-HHCCCCCCC
T ss_conf 4300103446899858864463555304886589765984456444--406886888984388-656706-770788578
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCE
Q ss_conf 78513887732353333035355002545447688881103899665521113664458987883233773118899757
Q 002606 605 LLDLSNSRIRELPEELAALVNLKCLNLEYTFDLAKIPWNLISNFSRLHVLRMFGNAIRSGSFDGDELMVKELLGLKHLEV 684 (901)
Q Consensus 605 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~~L~~ 684 (901)
+|++++|.+..+|. +..+++|+.|++++|.....++. +..+++|++|++.+|.+... ..+..+++|+.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~---------~~~~~l~~L~~ 181 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV---------TPIANLTDLYS 181 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC---------GGGGGCTTCSE
T ss_pred EEECCCCCCCCCHH-HCCCCCEEEEECCCCCCCCCCCC--HHHCCCCCEEEECCCCCCCC---------HHHCCCCCCCE
T ss_conf 88886885667630-24687601897779987443601--23178774788168886776---------10024787888
Q ss_pred EEEEECCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCE
Q ss_conf 89985163000221113100013513575334797322137657445771521368995067844436643313566218
Q 002606 685 LSFTLRSSHALKSFLTSHQLRSCTQALLLHCFKDSSLDVSGLADLKQLNRLRIADCPELVELKIDYKGEAQQFCFQSLRV 764 (901)
Q Consensus 685 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~L~~ 764 (901)
|++..+....+..+ .....++.+.+..+.....+. +..+++|+.|.+.+|. +..++. ...+++|+.
T Consensus 182 L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~-l~~~~~-------~~~l~~L~~ 247 (347)
T 4fmz_A 182 LSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK-ITDLSP-------LANLSQLTW 247 (347)
T ss_dssp EECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGG-------GTTCTTCCE
T ss_pred EECCCCCCCCCCCC----CCCCCCCEEECCCCCCCCCCH--HHCCCCCCEEECCCCC-CCCCCC-------HHCCCCCCE
T ss_conf 98149856654031----677752066122477778853--4447868979855985-678722-------201888898
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 97413788788811011389667988326344310235745685222358997776356614576545412589878998
Q 002606 765 VVIDLCIGLKDLTFLVFASNLKSIEVRSCFAMEDIISVGKFADFPEVMANLNPFAKLQYLQLAGLPNLKSIYWKPLPFSH 844 (901)
Q Consensus 765 L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~i~~i~~~~~~~~l~~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~ 844 (901)
|.+.+| .++.++.+..+++|+.|++++|. ++.+. ....+++|+.|++++|.--...+.....+++
T Consensus 248 L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 248 LEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp EECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred EECCCC-CCCCCHHHHCCCCCCEEECCCCC-CCCCH-------------HHCCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf 979887-55878567168976789802985-68885-------------4558998888977699687759667626666
Q ss_pred CCEEEECCCCCCCCC
Q ss_conf 556854477688688
Q 002606 845 LKEMSVFNCDKLKKL 859 (901)
Q Consensus 845 L~~L~i~~C~~L~~L 859 (901)
|+.|++.+|+ ++.+
T Consensus 313 L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDI 326 (347)
T ss_dssp CSEEECCSSS-CCCC
T ss_pred CCEEECCCCC-CCCC
T ss_conf 8789754974-4566
Done!