BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002607
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP C+ CP++ C
Sbjct: 184 MMDLGAMICTRSKPKCSLCPLQNGC 208
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 525 HYQMITFGKVFCTKSKPNCNACPMRGECR 553
H++MI FG+ C P C +CP+ CR
Sbjct: 181 HHRMIFFGRYHCKAQSPQCPSCPLLHLCR 209
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 525 HYQMITFGKVFCTKSKPNCNACPMRGECR 553
H++MI FG+ C P C +CP+ CR
Sbjct: 181 HHRMIFFGRYHCKAQSPQCPSCPLLHLCR 209
>pdb|1RN7|A Chain A, Structure Of Human Cystatin D
pdb|1ROA|A Chain A, Structure Of Human Cystatin D
Length = 122
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 525 HYQMITFGKVFCTKSKPNCNACPM 548
+Y + FG+ CTKS+PN + CP
Sbjct: 64 YYFNVKFGRTTCTKSQPNLDNCPF 87
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 45/222 (20%), Positives = 74/222 (33%), Gaps = 68/222 (30%)
Query: 394 IDDATSKSKSTRVS------KEKQNDFDWDSLR------------RQVEANGGKKERPEH 435
+DDAT+K + VS + DF W R R+ A KK +
Sbjct: 1 MDDATNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKF 60
Query: 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGSVDLEWLRDVPPD 495
+E + ++IA IKE G++N A ++K+ ++ D+G VP +
Sbjct: 61 FVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVPRN 113
Query: 496 KAKYPVLESIQKYLWPRLCKL------------------------------DQRTLYELH 525
+ L + KY + L + + L+EL
Sbjct: 114 RKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELA 173
Query: 526 YQMITFGK-------------VFCTKSKPNCNACPMRGECRH 554
++ GK + C KP C C M C +
Sbjct: 174 ETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSY 215
>pdb|3T2U|A Chain A, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
pdb|3T2U|B Chain B, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
Length = 208
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 640 DTFCEDPEEIPT--IKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTAGAASIPAPKL 697
D FCE ++ T K+ + + +Y+++ L ++ K L G I K+
Sbjct: 88 DMFCEGVRDLHTKYTKMIYQAYDTEKDSYIKDILPVELAKFEKLLATRDDGKNFILGEKI 147
Query: 698 KNVS-RLRTEHQVYELPDSH-----PLLRGMEKREPDDPG 731
V L E ++++ D H PLL+ +R D PG
Sbjct: 148 SYVDFVLFEELDIHQILDPHCLDKFPLLKAYHQRMEDRPG 187
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 528 MITFGKVFCTKSKPNCNACPMRGEC 552
M+ G + CT+SKP + CP++ C
Sbjct: 184 MMDLGAMICTRSKPKHSLCPLQNGC 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,854,236
Number of Sequences: 62578
Number of extensions: 951289
Number of successful extensions: 2098
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2086
Number of HSP's gapped (non-prelim): 14
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)