Query 002607
Match_columns 901
No_of_seqs 234 out of 1381
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 17:07:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002607.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1323-1327//hhsearch_pdb/002607hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 1.0 1 1 214.7 8.4 158 403-573 41-235 (369)
2 3n5n_X A/G-specific adenine DN 1.0 1 1 211.5 7.1 148 403-560 51-236 (287)
3 1kea_A Possible G-T mismatches 1.0 1 1 206.8 8.0 148 402-558 36-219 (221)
4 1kg2_A A/G-specific adenine gl 1.0 1 1 206.5 8.3 156 403-571 32-224 (225)
5 1orn_A Endonuclease III; DNA r 1.0 1 1 205.3 8.8 148 402-558 34-214 (226)
6 2abk_A Endonuclease III; DNA-r 1.0 1 1 202.8 7.2 144 403-555 31-206 (211)
7 1pu6_A 3-methyladenine DNA gly 1.0 1 1 154.3 7.3 125 402-534 31-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 1.0 1 1 140.1 5.5 123 401-538 44-196 (214)
9 4e9f_A Methyl-CPG-binding doma 1.0 1 1 123.6 5.6 96 404-509 34-142 (161)
10 3fhg_A Mjogg, N-glycosylase/DN 1.0 1 1 120.5 5.9 121 403-538 35-189 (207)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=1.00 E-value=1 Score=214.72 Aligned_cols=158 Identities=19% Similarity=0.258 Sum_probs=134.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33448414556796899999996089988988769999999997199999999974049629999999999999999709
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG 482 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~G 482 (901)
..=+..|+.|+|+|+++.+++.+ |. ..+++|++|+.++.++|+++|+++|||+ ||++|+++++++.++||
T Consensus 41 ~~lv~~il~qqt~~~~~~~~~~~-l~--------~~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~ 110 (369)
T 3fsp_A 41 KVWVSEVMLQQTRVETVIPYFEQ-FI--------DRFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYG 110 (369)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH-HH--------HHCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCC
T ss_conf 99999999650759999999999-99--------9777999997789999999998668499-99999999999999829
Q ss_pred C-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH-------------------HC-CCCHHHHHHHH
Q ss_conf 9-5-----65325789934569-----------84238799999653-------------------11-59999899999
Q 002607 483 S-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR-------------------LC-KLDQRTLYELH 525 (901)
Q Consensus 483 g-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~-------------------L~-~ld~e~l~EfH 525 (901)
| + .|..|+|||++||+ ++||++|.|.+... +. .+|.+.+.+||
T Consensus 111 g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (369)
T 3fsp_A 111 GKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFN 190 (369)
T ss_dssp TCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99836899985599867799999999977998133338999999997276667554324999999999847941399999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 999998163312589888889972002344301322345589963222
Q 002607 526 YQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEEKA 573 (901)
Q Consensus 526 aLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~~as~r~~lP~pe~k~ 573 (901)
++||+||+.+|++++|+|+.|||++.|.+|..+.. ..+|.|++|+
T Consensus 191 ~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~---~~~PvK~~kk 235 (369)
T 3fsp_A 191 EALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA---EELPVKMKKT 235 (369)
T ss_dssp HHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCG---GGCSCCCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC---CCCCCCCCCC
T ss_conf 99999988763899998988878444489866986---6588655556
No 2
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=211.52 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=126.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33448414556796899999996089988988769999999997199999999974049629999999999999999709
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG 482 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~G 482 (901)
..=+..|+.|+|+|+++.+++.+ |. ..+++|++|+.++.++|+++|+++|||+ ||++|++++++|+++||
T Consensus 51 e~LVs~ILsQQts~~~v~~~~~r-L~--------~~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~ 120 (287)
T 3n5n_X 51 AVWVSEVMLQQTQVATVINYYTG-WM--------QKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELG 120 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH-HH--------HHCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHC
T ss_conf 99999999677859999999999-99--------9878999998499999999999868799-99999999999999808
Q ss_pred C-C-----CCCC-CCCCCCCCCC-----------CCCHHHHHHHHHHH-------------------H-CCCCHHHHHHH
Q ss_conf 9-5-----6532-5789934569-----------84238799999653-------------------1-15999989999
Q 002607 483 S-V-----DLEW-LRDVPPDKAK-----------YPVLESIQKYLWPR-------------------L-CKLDQRTLYEL 524 (901)
Q Consensus 483 g-i-----DLE~-LrGIG~ETAd-----------YPVdt~VqR~Le~~-------------------L-~~ld~e~l~Ef 524 (901)
| + .|.. |+|||++||+ ++||++|+|.+... + ..+|.+.+.+|
T Consensus 121 g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~ 200 (287)
T 3n5n_X 121 GHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDF 200 (287)
T ss_dssp TCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99718999999876798889999999985279976025999999999478889998599999999999974898889999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 999999816331258988888997200234430132
Q 002607 525 HYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFA 560 (901)
Q Consensus 525 HaLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~~a 560 (901)
|++||+||+.+|++++|+|+.|||++.|++|.....
T Consensus 201 h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~~~ 236 (287)
T 3n5n_X 201 NQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQ 236 (287)
T ss_dssp HHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 999999819974899999988977655388871651
No 3
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=1.00 E-value=1 Score=206.80 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=127.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
=..=+..|+.|+|+|+++.+++.+ |. ..+++|++|+.++.++|+++|+++|||++||++|+++++++.+.+
T Consensus 36 fe~lv~~IlsQqts~~~~~~~~~~-l~--------~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~ 106 (221)
T 1kea_A 36 YVILITEILLRRTTAGHVKKIYDK-FF--------VKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDY 106 (221)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHH-HH--------HHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999764879999999999-99--------987899999778999999999877997799999999999999980
Q ss_pred CC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH--------------H-CC----CCHHHHHHHH
Q ss_conf 99-5-----65325789934569-----------84238799999653--------------1-15----9999899999
Q 002607 482 GS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR--------------L-CK----LDQRTLYELH 525 (901)
Q Consensus 482 Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~--------------L-~~----ld~e~l~EfH 525 (901)
+| + .|..|+|||++||+ ||||++|+|.+... + .. +|.+.|.+||
T Consensus 107 ~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~~~~~~~~ 186 (221)
T 1kea_A 107 GGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFN 186 (221)
T ss_dssp TTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 89965999999847997299999999986699802244999999999718877898278999999999868852199999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 999998163312589888889972002344301
Q 002607 526 YQMITFGKVFCTKSKPNCNACPMRGECRHFASA 558 (901)
Q Consensus 526 aLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~ 558 (901)
++||+||+.+|++++|+|+.|||++.|+++...
T Consensus 187 ~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 187 LGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp HHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCC
T ss_conf 999999899869999999989981316445317
No 4
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=1.00 E-value=1 Score=206.55 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33448414556796899999996089988988769999999997199999999974049629999999999999999709
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG 482 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~G 482 (901)
..=+..|+.|+|+|+++.+++.+ |. ..+++|++|+.++.++|.++|+++|||+ ||++|+++++++.+.++
T Consensus 32 e~lv~~IlsQqt~~~~v~~~~~~-l~--------~~~pt~~~la~~~~~~l~~~i~~~G~~~-kA~~l~~~a~~i~~~~~ 101 (225)
T 1kg2_A 32 KVWLSEVMLQQTQVATVIPYFER-FM--------ARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHG 101 (225)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHH-HH--------HHCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHC
T ss_conf 99999999776879999999999-99--------9787999998779999999998678099-99999999999999838
Q ss_pred C-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH---------------H-----CCCCHHHHHHHH
Q ss_conf 9-5-----65325789934569-----------84238799999653---------------1-----159999899999
Q 002607 483 S-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR---------------L-----CKLDQRTLYELH 525 (901)
Q Consensus 483 g-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~---------------L-----~~ld~e~l~EfH 525 (901)
+ + .|..|+|||++||+ ++||++|+|.+... + ..+|.+.|.+||
T Consensus 102 g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 181 (225)
T 1kg2_A 102 GKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFN 181 (225)
T ss_dssp TSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99648999986589984999999999957998112679999999997488777773103999999999878934199999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999981633125898888899720023443013223455899632
Q 002607 526 YQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPEE 571 (901)
Q Consensus 526 aLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~~as~r~~lP~pe~ 571 (901)
++||+||+.+|++++|+|+.|||++.|++|..+.. ..+|.+++
T Consensus 182 ~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~---~~~p~~~~ 224 (225)
T 1kg2_A 182 QAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSW---ALYPGKKP 224 (225)
T ss_dssp HHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCG---GGSSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCCC---CCCCCCCC
T ss_conf 99999988876899999999998343789775993---23789889
No 5
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=1.00 E-value=1 Score=205.33 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=128.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
=..=+..|+.|||+|+++.+++.+ |. ..+++|++|+.++.++|+++|+++|||++||++|+++++++.+.+
T Consensus 34 fe~Lv~~IlsQqts~~~v~~~~~~-l~--------~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~ 104 (226)
T 1orn_A 34 FELLIAVVLSAQCTDALVNKVTKR-LF--------EKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKY 104 (226)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH-HH--------HHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999587869999999999-99--------987899999859999999999976991999999999999999980
Q ss_pred CC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH---------------H-CCCCHHHHHHHHHHH
Q ss_conf 99-5-----65325789934569-----------84238799999653---------------1-159999899999999
Q 002607 482 GS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR---------------L-CKLDQRTLYELHYQM 528 (901)
Q Consensus 482 Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~---------------L-~~ld~e~l~EfHaLL 528 (901)
+| + .|..|+|||++||+ ||||+++.|.+... + ..+|.+.|.+||++|
T Consensus 105 ~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~l 184 (226)
T 1orn_A 105 NGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRM 184 (226)
T ss_dssp TTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 89818999999987996489999999997799540007999999999288778999999999998836741199999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 998163312589888889972002344301
Q 002607 529 ITFGKVFCTKSKPNCNACPMRGECRHFASA 558 (901)
Q Consensus 529 IefGK~iCtarKPkC~aCPLrd~C~yy~s~ 558 (901)
|+||+.+|++++|+|+.|||++.|+++...
T Consensus 185 v~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 185 IFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 999999858999999999776542667624
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=1.00 E-value=1 Score=202.82 Aligned_cols=144 Identities=20% Similarity=0.163 Sum_probs=125.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33448414556796899999996089988988769999999997199999999974049629999999999999999709
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG 482 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~G 482 (901)
..=+..|+.|||+|+++.+++.+ |. ..+++|++|+.++.++|+++|+++|||++||++|+++++++.+.++
T Consensus 31 e~lv~~Il~qqts~~~v~~~~~~-l~--------~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~ 101 (211)
T 2abk_A 31 ELLIAVLLSAQATDVSVNKATAK-LY--------PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN 101 (211)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH-HT--------TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999677889999999999-99--------9878999998779999999999869976999999999999999849
Q ss_pred C-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH--------------H-CCCCHHHHHHHHHHHHH
Q ss_conf 9-5-----65325789934569-----------84238799999653--------------1-15999989999999999
Q 002607 483 S-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR--------------L-CKLDQRTLYELHYQMIT 530 (901)
Q Consensus 483 g-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~--------------L-~~ld~e~l~EfHaLLIe 530 (901)
+ + .|..|+|||++||+ ||||+++.|.+... + ..+|.+.|.+||++||+
T Consensus 102 g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 181 (211)
T 2abk_A 102 GEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLIL 181 (211)
T ss_dssp TSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSCGGGTTTHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98468999998489997699999999977997377678999999994888899999999999985574219999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 8163312589888889972002344
Q 002607 531 FGKVFCTKSKPNCNACPMRGECRHF 555 (901)
Q Consensus 531 fGK~iCtarKPkC~aCPLrd~C~yy 555 (901)
||+.+|++++|+|+.|||++.|+|+
T Consensus 182 ~G~~~C~~~~P~C~~Cpl~~~C~~~ 206 (211)
T 2abk_A 182 HGRYTCIARKPRCGSCIIEDLCEYK 206 (211)
T ss_dssp HHHHTSCSSSCCGGGCTTGGGCCCT
T ss_pred HHHHHCCCCCCCCCCCCCHHHCCCC
T ss_conf 9999778999999999992327886
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=1.00 E-value=1 Score=154.26 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC------HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 2334484145567968999999960899889887699999------9999719999999997404962999999999999
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLD------WEAVRCADVNKIANTIKERGMNNMLAGRIKDFLN 475 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllD------pEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk 475 (901)
-..=+++|+.|||+|.++.+++.+ |. ..++++ |++|+.++.++|+++|+++|||++||++|+++++
T Consensus 31 fe~Lv~~ILsQqts~~~v~~~~~~-L~-------~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~ 102 (218)
T 1pu6_A 31 FEALLGAVLTQNTKFEAVLKSLEN-LK-------NAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 102 (218)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHH-HH-------HTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHH-HH-------HCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999388879999999999-99-------7049995433659999809999999999977993999999999999
Q ss_pred HHHHHCCCC----------CCCCCCCCCCCCCC-----------CCCHHHHHHH-----------------HHH----HH
Q ss_conf 999970995----------65325789934569-----------8423879999-----------------965----31
Q 002607 476 RLVRDHGSV----------DLEWLRDVPPDKAK-----------YPVLESIQKY-----------------LWP----RL 513 (901)
Q Consensus 476 ~Ivee~Ggi----------DLE~LrGIG~ETAd-----------YPVdt~VqR~-----------------Le~----~L 513 (901)
++.+.++++ .|..|+|||++||+ ||||+++.|. ++. .+
T Consensus 103 ~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~~~~~~~~~~~l~~~~p~~l 182 (218)
T 1pu6_A 103 NILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENL 182 (218)
T ss_dssp HHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99985498652643579999975899279999999999779995501799999999849999999999999997534307
Q ss_pred C--------CC-CHHHHHHHHHHHHHHHHH
Q ss_conf 1--------59-999899999999998163
Q 002607 514 C--------KL-DQRTLYELHYQMITFGKV 534 (901)
Q Consensus 514 ~--------~l-d~e~l~EfHaLLIefGK~ 534 (901)
+ .+ +.+.|++||++||+|||.
T Consensus 183 p~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 183 NSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 603210012334399999999999998110
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=1.00 E-value=1 Score=140.13 Aligned_cols=123 Identities=14% Similarity=0.060 Sum_probs=104.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CHHHHHHHHHHHHH--H
Q ss_conf 2233448414556796899999996089988988769999999997199999999974049--62999999999999--9
Q 002607 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERG--MNNMLAGRIKDFLN--R 476 (901)
Q Consensus 401 ~k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaG--FYr~KAkRIKalAk--~ 476 (901)
+-..=++.||.|||+|.++.+++.+ |+ ++|+.++.++|+++|+++| ||++||++|+++++ .
T Consensus 44 ~fe~Lv~~ILsqqt~~~~v~~a~~~-L~--------------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~ 108 (214)
T 3fhf_A 44 WFKELCFCILTANFTAEGGIRIQKE-IG--------------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKN 108 (214)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHH-HT--------------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH-HH--------------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6999999998277889999999999-99--------------99987999999999999724779999999999997668
Q ss_pred HHHHCCCC--------CCC-CCCCCCCCCCC----------CC-CHHHHHHHHHHH--H----CCCCHHHHHHHHHHHHH
Q ss_conf 99970995--------653-25789934569----------84-238799999653--1----15999989999999999
Q 002607 477 LVRDHGSV--------DLE-WLRDVPPDKAK----------YP-VLESIQKYLWPR--L----CKLDQRTLYELHYQMIT 530 (901)
Q Consensus 477 Ivee~Ggi--------DLE-~LrGIG~ETAd----------YP-Vdt~VqR~Le~~--L----~~ld~e~l~EfHaLLIe 530 (901)
+.+.++++ .|. .|+|||++||+ +| ||+||.|.+... . ..++.+.|.++|.+|++
T Consensus 109 l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~ 188 (214)
T 3fhf_A 109 IKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRD 188 (214)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99986364785799999998089987999999999749988320719999999984898888776999999999999999
Q ss_pred HHHHHCCC
Q ss_conf 81633125
Q 002607 531 FGKVFCTK 538 (901)
Q Consensus 531 fGK~iCta 538 (901)
||+.+|.+
T Consensus 189 ~g~~~g~~ 196 (214)
T 3fhf_A 189 IGEEVNLK 196 (214)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
T ss_conf 99997979
No 9
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=1.00 E-value=1 Score=123.58 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 34484145567968999999960899889887699999999971999999999740496299999999999999997099
Q 002607 404 TRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHGS 483 (901)
Q Consensus 404 ~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~Gg 483 (901)
-=++.||.|+|+|++|.+++.+ |.+ -.+||++|+.|+.++|+++|+++|||++||++|+++++.++.+..
T Consensus 34 vLVs~ILsqQT~~~~v~~~~~~-l~~--------~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~- 103 (161)
T 4e9f_A 34 LLIATIFLNRTSGKMAIPVLWK-FLE--------KYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQW- 103 (161)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH-HHH--------HSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHCCHHHHHHHHHH-HHH--------HCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCH-
T ss_conf 9999999842959999999999-999--------877999996228486776823268799999999999679588971-
Q ss_pred CCCCCCCCCCCCCCC-------------CCCHHHHHHHH
Q ss_conf 565325789934569-------------84238799999
Q 002607 484 VDLEWLRDVPPDKAK-------------YPVLESIQKYL 509 (901)
Q Consensus 484 iDLE~LrGIG~ETAd-------------YPVdt~VqR~L 509 (901)
-+|..|+|||++||+ +|+|.+++|++
T Consensus 104 ~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l 142 (161)
T 4e9f_A 104 KYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYH 142 (161)
T ss_dssp SSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 014249985299999999998799888898759999999
No 10
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=120.47 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=99.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH-
Q ss_conf 33448414556796899999996089988988769999999997199999999974049--629999999999999999-
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERG--MNNMLAGRIKDFLNRLVR- 479 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaG--FYr~KAkRIKalAk~Ive- 479 (901)
..=++.|+.|||+|+++.+++.+ | +++|+.++.++|+++|+++| ||++||++|+++++++.+
T Consensus 35 e~Lv~~ILsqqts~~~~~~~~~~-L--------------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 35 RELTLCLLTANSSFISAYQALNC-L--------------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH-H--------------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH-H--------------HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999997588879999999999-9--------------89887599999999998806674799999999999999987
Q ss_pred ------HCCCC-------CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH------H-CCCCHHHHHHHHHHH
Q ss_conf ------70995-------65325789934569-----------84238799999653------1-159999899999999
Q 002607 480 ------DHGSV-------DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR------L-CKLDQRTLYELHYQM 528 (901)
Q Consensus 480 ------e~Ggi-------DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~------L-~~ld~e~l~EfHaLL 528 (901)
.+++. .|..|+|||++||+ +|||+|+.|.+... + ..++...|.++|..|
T Consensus 100 ~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l 179 (207)
T 3fhg_A 100 LKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGYFDLAIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENIL 179 (207)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 32029987479999999999738986899999999980798803026999999998599875455669999999999999
Q ss_pred HHHHHHHCCC
Q ss_conf 9981633125
Q 002607 529 ITFGKVFCTK 538 (901)
Q Consensus 529 IefGK~iCta 538 (901)
+.||+.+|..
T Consensus 180 ~~~~~~~~~~ 189 (207)
T 3fhg_A 180 KSIASNLNMS 189 (207)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHCCC
T ss_conf 9999996979
Done!