Query 002607
Match_columns 901
No_of_seqs 234 out of 1381
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 17:12:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002607.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1323-1327//hhsearch_scop/002607hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2abka_ a.96.1.1 (A:) Endonucl 100.0 6.3E-31 4.6E-35 222.7 6.9 147 402-557 30-208 (211)
2 d1keaa_ a.96.1.2 (A:) Thymine- 100.0 1.1E-30 7.9E-35 221.2 7.5 148 401-557 33-216 (217)
3 d1kg2a_ a.96.1.2 (A:) Catalyti 100.0 6.2E-30 4.5E-34 216.1 8.1 157 401-570 30-223 (224)
4 d1rrqa1 a.96.1.2 (A:9-229) Cat 100.0 3.1E-29 2.3E-33 211.4 8.4 155 402-569 29-220 (221)
5 d1orna_ a.96.1.1 (A:) Endonucl 100.0 5.6E-29 4.1E-33 209.7 8.8 148 402-558 31-211 (214)
6 d1pu6a_ a.96.1.5 (A:) 3-Methyl 99.9 8.1E-24 5.9E-28 175.1 6.4 136 402-539 30-216 (217)
7 d1ngna_ a.96.1.2 (A:) Mismatch 99.5 2.3E-14 1.7E-18 111.7 5.1 86 403-498 22-107 (144)
8 d2noha1 a.96.1.3 (A:136-325) 8 98.8 1.6E-08 1.2E-12 72.6 8.4 102 406-512 7-143 (190)
9 d1mpga1 a.96.1.3 (A:100-282) 3 98.0 6.4E-06 4.7E-10 55.1 7.1 99 406-509 19-146 (183)
10 d1szpa1 a.60.4.1 (A:81-144) DN 44.1 6.6 0.00048 14.8 3.0 40 436-478 21-60 (64)
11 d2i1qa1 a.60.4.1 (A:5-64) DNA 38.1 8.1 0.00059 14.2 3.9 39 437-478 18-56 (60)
12 d1b22a_ a.60.4.1 (A:) DNA repa 23.9 9.7 0.0007 13.7 0.5 40 436-478 28-67 (70)
13 d1vdda_ e.49.1.1 (A:) Recombin 21.8 15 0.0011 12.4 2.9 62 485-557 13-74 (199)
No 1
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=6.3e-31 Score=222.75 Aligned_cols=147 Identities=19% Similarity=0.147 Sum_probs=129.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
-..=++.||.|+|.|++|.+++.+ |.+ -.++|++++.|+.++|+++|+++|||++||++|++++++|+++|
T Consensus 30 ~~vli~~iLsqqT~~~~v~~~~~~-l~~--------~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~ 100 (211)
T d2abka_ 30 FELLIAVLLSAQATDVSVNKATAK-LYP--------VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQH 100 (211)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHH-HTT--------TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHH--------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999562639999999998-887--------41472788765576767777775441157889999988899871
Q ss_pred CCC------CCCCCCCCCCCCCC-----------CCCHHHHHHHHHH--------------H-HCCCCHHHHHHHHHHHH
Q ss_conf 995------65325789934569-----------8423879999965--------------3-11599998999999999
Q 002607 482 GSV------DLEWLRDVPPDKAK-----------YPVLESIQKYLWP--------------R-LCKLDQRTLYELHYQMI 529 (901)
Q Consensus 482 Ggi------DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~--------------~-L~~ld~e~l~EfHaLLI 529 (901)
||. +|+.|+|||++||+ ++||++|+|.+.. . ...+|.+.+.+||++||
T Consensus 101 ~g~~p~~~~~L~~LpGVG~~TA~~Il~~a~~~p~~~vD~nv~Rv~~R~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 180 (211)
T d2abka_ 101 NGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI 180 (211)
T ss_dssp TTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSCGGGTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 48604779999999860517899999998568032256799999997066754204678888860486034899999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9816331258988888997200234430
Q 002607 530 TFGKVFCTKSKPNCNACPMRGECRHFAS 557 (901)
Q Consensus 530 efGK~iCtarKPkC~aCPLrd~C~yy~s 557 (901)
+||+.+|++++|+|+.|||++.|+||..
T Consensus 181 ~~G~~vC~~~~P~C~~Cpl~~~C~~~~k 208 (211)
T d2abka_ 181 LHGRYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp HHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9855552599989999979055898676
No 2
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=99.96 E-value=1.1e-30 Score=221.15 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=129.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22334484145567968999999960899889887699999999971999999999740496299999999999999997
Q 002607 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480 (901)
Q Consensus 401 ~k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee 480 (901)
+=..=++.||.|+|+|++|.+++.+ |. .-.++|++|+.|+.++|+++|+++|||++||++|++++++|+++
T Consensus 33 p~~vLv~~iLsqqT~~~~v~~~~~~-l~--------~~~pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~ 103 (217)
T d1keaa_ 33 PYVILITEILLRRTTAGHVKKIYDK-FF--------VKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIND 103 (217)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHH-HH--------HHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH-HH--------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999801968999999999-98--------72340999998638999999999986467888999999998861
Q ss_pred CCC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHH------------------HHC-CCCHHHHHHH
Q ss_conf 099-5-----65325789934569-----------8423879999965------------------311-5999989999
Q 002607 481 HGS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWP------------------RLC-KLDQRTLYEL 524 (901)
Q Consensus 481 ~Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~------------------~L~-~ld~e~l~Ef 524 (901)
||| + +|+.|+|||++||+ ++||+++.|.+-. .+. .+|.+.+.+|
T Consensus 104 ~~g~~p~~~~~L~~LpGVG~kTA~~il~~~~~~~~~~vD~~v~Rv~~R~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 183 (217)
T d1keaa_ 104 YGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDF 183 (217)
T ss_dssp HTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 26875302588998876424666788987458732000421101222202667543105789999999870881559999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999999816331258988888997200234430
Q 002607 525 HYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 557 (901)
Q Consensus 525 HaLLIefGK~iCtarKPkC~aCPLrd~C~yy~s 557 (901)
|.+||+||+.+|++++|+|+.|||++.|+||..
T Consensus 184 ~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~y~k 216 (217)
T d1keaa_ 184 NLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEK 216 (217)
T ss_dssp HHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999979865798999988988010847458
No 3
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=6.2e-30 Score=216.08 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=133.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22334484145567968999999960899889887699999999971999999999740496299999999999999997
Q 002607 401 SKSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480 (901)
Q Consensus 401 ~k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee 480 (901)
+-..=++.||.|+|+|++|.+++.+ |.+ ..++|++|+.|+.++|+++|+++|||+ ||++|+.+++.|+++
T Consensus 30 p~~vlvs~iLsqqT~~~~v~~~~~~-l~~--------~~pt~~~la~a~~~~l~~~i~~~g~~~-ka~~l~~~~~~i~~~ 99 (224)
T d1kg2a_ 30 PYKVWLSEVMLQQTQVATVIPYFER-FMA--------RFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATL 99 (224)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHH-HHH--------HCSSHHHHHHSCHHHHHHHHTTSCCTH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-HHH--------HHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 6999999999830909999999999-999--------834399998741898876753136887-778998755664331
Q ss_pred CCC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHH-------------------HHC-CCCHHHHHH
Q ss_conf 099-5-----65325789934569-----------8423879999965-------------------311-599998999
Q 002607 481 HGS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWP-------------------RLC-KLDQRTLYE 523 (901)
Q Consensus 481 ~Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~-------------------~L~-~ld~e~l~E 523 (901)
|+| + +|..|+|||++||+ ++||+||.|.+.. .+. .+|...+++
T Consensus 100 ~~g~vp~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~vD~~v~Rv~~Rl~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~ 179 (224)
T d1kg2a_ 100 HGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVER 179 (224)
T ss_dssp STTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 15874037999999982014456899987640100111401999988961466876511789999987512485002249
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99999998163312589888889972002344301322345589963
Q 002607 524 LHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGPE 570 (901)
Q Consensus 524 fHaLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~~as~r~~lP~pe 570 (901)
||.+||+||+.+|++++|+|+.|||++.|.+|+.+.. ..+|.++
T Consensus 180 ~~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~---~~~P~kk 223 (224)
T d1kg2a_ 180 FNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSW---ALYPGKK 223 (224)
T ss_dssp HHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCG---GGSSCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCCC---CCCCCCC
T ss_conf 9999999867781289999999969222968666995---3178999
No 4
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.95 E-value=3.1e-29 Score=211.37 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=128.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
-..=++.||.|+|+|++|.+++.+ |.+ ..++|++|+.|+.++|+++|+++|||+ ||++++..+..+++++
T Consensus 29 ~~vLV~~iLsqqT~~~~v~~~~~~-L~~--------~~~t~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~~~~~~~~~ 98 (221)
T d1rrqa1 29 YKVWVSEVMLQQTRVETVIPYFEQ-FID--------RFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRY 98 (221)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH-HHH--------HSCSHHHHHHSCHHHHHHHHTTSSCTH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH-HHH--------HCCHHHHHHHHCHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHC
T ss_conf 999999999802929999999998-888--------536288887215899986620301222-3578998887776640
Q ss_pred CC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHHH-------------------H-CCCCHHHHHHH
Q ss_conf 99-5-----65325789934569-----------84238799999653-------------------1-15999989999
Q 002607 482 GS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWPR-------------------L-CKLDQRTLYEL 524 (901)
Q Consensus 482 Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~~-------------------L-~~ld~e~l~Ef 524 (901)
+| + +|..|+|||++||+ ++||+||.|.+... + ..++.+.+.+|
T Consensus 99 ~G~vp~~~~~Ll~LpGIG~kTA~~il~~a~~~p~~~VDt~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (221)
T d1rrqa1 99 GGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVNGNVMRVLSRLFLVTDDIAKCSTRKRFEQIVREIMAYENPGAF 178 (221)
T ss_dssp TTCCCCSHHHHHTSTTCCHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHTTCCSCTTSTTHHHHHHHHHHHHCCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 79886189999988875047888999998558643557508777777633578731346777877754201110210499
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
Q ss_conf 999999816331258988888997200234430132234558996
Q 002607 525 HYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASSRLALPGP 569 (901)
Q Consensus 525 HaLLIefGK~iCtarKPkC~aCPLrd~C~yy~s~~as~r~~lP~p 569 (901)
|++||+||+.+|++++|+|+.|||++.|+||+.+.+ ..+|.+
T Consensus 179 ~~~l~~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~---~~~P~k 220 (221)
T d1rrqa1 179 NEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVA---EELPVK 220 (221)
T ss_dssp HHHHHHHHHHTSCSSSCCGGGCTTGGGCHHHHTTCT---TTCSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCCC---HHCCCC
T ss_conf 999999989973889999999969434997606991---006878
No 5
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=5.6e-29 Score=209.66 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
=..=++.||.|+|.|++|.+++.+ |. ...++|++++.++.++|.++|+++|||++||++|+.++++|.+++
T Consensus 31 ~~vLVs~iLsqqT~~~~v~~~~~~-l~--------~~~pt~~~la~~~~~e~~~~i~~~g~y~~ka~~l~~~a~~i~~~~ 101 (214)
T d1orna_ 31 FELLIAVVLSAQCTDALVNKVTKR-LF--------EKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKY 101 (214)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH-HH--------HHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHH-HH--------CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999851919999888752-21--------035754655205577765332103241088899999855479983
Q ss_pred CC-C-----CCCCCCCCCCCCCC-----------CCCHHHHHHHHHH---------------HH-CCCCHHHHHHHHHHH
Q ss_conf 99-5-----65325789934569-----------8423879999965---------------31-159999899999999
Q 002607 482 GS-V-----DLEWLRDVPPDKAK-----------YPVLESIQKYLWP---------------RL-CKLDQRTLYELHYQM 528 (901)
Q Consensus 482 Gg-i-----DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~---------------~L-~~ld~e~l~EfHaLL 528 (901)
|| + +|..|+|||++||+ ++||+||.|.+.. .+ ..+|.+.+.+||++|
T Consensus 102 ~g~vp~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv~RV~~Rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~l 181 (214)
T d1orna_ 102 NGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRM 181 (214)
T ss_dssp TTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99788889999718686632677899987058755555238889999887403551044455565307656678999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 998163312589888889972002344301
Q 002607 529 ITFGKVFCTKSKPNCNACPMRGECRHFASA 558 (901)
Q Consensus 529 IefGK~iCtarKPkC~aCPLrd~C~yy~s~ 558 (901)
|+||+.+|++++|+|+.|||++.|++|...
T Consensus 182 ~~~G~~iC~~~~P~C~~Cpl~~~C~~~~k~ 211 (214)
T d1orna_ 182 IFFGRYHCKAQSPQCPSCPLLHLCREGKKR 211 (214)
T ss_dssp HHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 999998776999999889793008543336
No 6
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=99.88 E-value=8.1e-24 Score=175.07 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=109.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 23344841455679689999999608998898876999999999719999999997404962999999999999999970
Q 002607 402 KSTRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDH 481 (901)
Q Consensus 402 k~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~ 481 (901)
=..=+++||.|||+|+++++++.+ |+.. -.....++++|++|+.|+.++|+++||++|||++||++|+++++++.+++
T Consensus 30 fe~lv~aIL~Qqts~~~a~~a~~~-L~~~-~~~~~~~~~t~~~la~a~~eel~~~ir~~G~~~~KA~~i~~~a~~i~~~~ 107 (217)
T d1pu6a_ 30 FEALLGAVLTQNTKFEAVLKSLEN-LKNA-FILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDF 107 (217)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHH-HHHT-TSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HHHH-HHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999667989999999999-9998-74012248999999778999999999987993899999999999999743
Q ss_pred CCC----------CCCCCCCCCCCCCC-----------CCCHHHHHHHHHH-----------------HHCC--------
Q ss_conf 995----------65325789934569-----------8423879999965-----------------3115--------
Q 002607 482 GSV----------DLEWLRDVPPDKAK-----------YPVLESIQKYLWP-----------------RLCK-------- 515 (901)
Q Consensus 482 Ggi----------DLE~LrGIG~ETAd-----------YPVdt~VqR~Le~-----------------~L~~-------- 515 (901)
+++ .|..|+|||++||+ ||||+||.|.+.. .++.
T Consensus 108 ~~~~~~~~~~~~~~L~~lpGIG~kTA~~vl~~~~~~~~~~vD~hv~Rv~~Rlg~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (217)
T d1pu6a_ 108 QSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALAL 187 (217)
T ss_dssp SSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHHHHHHHHHHHHHTTHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10015996789999998763656999999999728805405748999999958888999999999999808889999887
Q ss_pred ----CC-HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----99-9989999999999816331258
Q 002607 516 ----LD-QRTLYELHYQMITFGKVFCTKS 539 (901)
Q Consensus 516 ----ld-~e~l~EfHaLLIefGK~iCtar 539 (901)
.+ ...|.+||++||+|||.+|+++
T Consensus 188 ~~~~~~~~~~~~~~H~llv~~Gk~~C~ak 216 (217)
T d1pu6a_ 188 YENTISLAQLYARFHGKIVEFSKQKLELK 216 (217)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 50013089999999999999969877899
No 7
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.46 E-value=2.3e-14 Score=111.72 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33448414556796899999996089988988769999999997199999999974049629999999999999999709
Q 002607 403 STRVSKEKQNDFDWDSLRRQVEANGGKKERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRDHG 482 (901)
Q Consensus 403 ~~~~~~iL~QNTsWeNVeKAl~n~Lkk~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee~G 482 (901)
+.=++.||.|+|+|++|.+++.+ |.+ ..+||++|+.|+.++|+++|+++|||++||++|+++++.++.+.+
T Consensus 22 ~~LV~~ILsqqT~~~~v~~v~~~-L~~--------~~pt~e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ip~~~ 92 (144)
T d1ngna_ 22 KLLIATIFLNRTSGKMAIPVLWE-FLE--------KYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQW 92 (144)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH-HHH--------HSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-HHH--------HCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999860979999999999-998--------677102110268899999987542487899999999855765215
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 9565325789934569
Q 002607 483 SVDLEWLRDVPPDKAK 498 (901)
Q Consensus 483 giDLE~LrGIG~ETAd 498 (901)
-+|..|+|||++||+
T Consensus 93 -~~l~~LpGVG~~tad 107 (144)
T d1ngna_ 93 -RYPIELHGIGKYGND 107 (144)
T ss_dssp -SSGGGSTTCCHHHHH
T ss_pred -HHHHHCCCCCHHHHH
T ss_conf -667866985689999
No 8
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.77 E-value=1.6e-08 Score=72.56 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=77.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC--C-----CCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 4841455679689999999608998--8-----98876999999999719999999997404962999999999999999
Q 002607 406 VSKEKQNDFDWDSLRRQVEANGGKK--E-----RPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478 (901)
Q Consensus 406 ~~~iL~QNTsWeNVeKAl~n~Lkk~--e-----r~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Iv 478 (901)
+.+|+.||++|.++++.+.+ |..+ + .......+|+|++|+.++.+++ ++..|+. .||++|+.+++.+.
T Consensus 7 v~~IisQq~s~~~~~~~~~~-L~~~~G~~~~~~~~~~~~~FP~~~~la~~~~e~~---l~~~~~~-~ra~~i~~~a~~i~ 81 (190)
T d2noha1 7 FSFICSSNNNIARITGMVER-LCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH---LRKLGLG-YRARYVSASARAIL 81 (190)
T ss_dssp HHHHTTTTSCHHHHHHHHHH-HHHHHSCEEEEETTEEEECCCCHHHHHSTTHHHH---HHHTTCT-THHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHH-HHHHHCCCCCCCCCCHHHCCCCHHHHHHCCHHHH---HHHCCHH-HHHHHHHHHHHHHH
T ss_conf 99999840079999999999-9999787756667502330299999987666989---9856348-99999999999998
Q ss_pred HHCCCC----------------CCCCCCCCCCCCCC------------CCCHHHHHHHHHHH
Q ss_conf 970995----------------65325789934569------------84238799999653
Q 002607 479 RDHGSV----------------DLEWLRDVPPDKAK------------YPVLESIQKYLWPR 512 (901)
Q Consensus 479 ee~Ggi----------------DLE~LrGIG~ETAd------------YPVdt~VqR~Le~~ 512 (901)
+.+++. .|..|+|||+.||+ ||||++|+|.+...
T Consensus 82 ~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpvD~~v~R~~~r~ 143 (190)
T d2noha1 82 EEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRD 143 (190)
T ss_dssp HTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCCHHHHHHHHHH
T ss_pred HHCCCCCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH
T ss_conf 73012368898637994799999987677518999999999769998675449999999998
No 9
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=98.05 E-value=6.4e-06 Score=55.10 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=70.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-----CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 484145567968999999960899-----889887699999999971999999999740496299999999999999997
Q 002607 406 VSKEKQNDFDWDSLRRQVEANGGK-----KERPEHTKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLVRD 480 (901)
Q Consensus 406 ~~~iL~QNTsWeNVeKAl~n~Lkk-----~er~~~~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Ivee 480 (901)
+.+|+-|+.+++...+...+ +.. .........+++|+.|+.++.++| |.+|+...||++|+.+++.+.+.
T Consensus 19 v~~Ii~Qqis~~aA~~i~~r-l~~~~g~~~~~~~~~~~FPtp~~l~~~~~~~l----r~~Gls~~Ka~~i~~~a~~~~~g 93 (183)
T d1mpga1 19 VRAILGQLVSVAMAAKLTAR-VAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLANAALEG 93 (183)
T ss_dssp HHHHHTTTSCHHHHHHHHHH-HHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH----HHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99998056009999999999-99986765455643247986999984999899----77599677899999999999828
Q ss_pred CCCC-----------CCCCCCCCCCCCCC------------CCC-HHHHHHHH
Q ss_conf 0995-----------65325789934569------------842-38799999
Q 002607 481 HGSV-----------DLEWLRDVPPDKAK------------YPV-LESIQKYL 509 (901)
Q Consensus 481 ~Ggi-----------DLE~LrGIG~ETAd------------YPV-dt~VqR~L 509 (901)
.-.. .|..|+|||+.||+ ||+ |..+++.+
T Consensus 94 ~l~~~~~~~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~lr~~~ 146 (183)
T d1mpga1 94 TLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF 146 (183)
T ss_dssp CSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHS
T ss_pred CHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 45543025579999999986453499999999860789984514069999873
No 10
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.13 E-value=6.6 Score=14.81 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 6999999999719999999997404962999999999999999
Q 002607 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478 (901)
Q Consensus 436 ~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Iv 478 (901)
.+|+.+.++|+.++.++|.+ --||-..||.+|++.++.++
T Consensus 21 ~aG~~Tve~ia~~t~~~L~~---i~Gi~e~~a~KIi~~A~k~~ 60 (64)
T d1szpa1 21 ESGLHTAEAVAYAPRKDLLE---IKGISEAKADKLLNEAARLV 60 (64)
T ss_dssp TTSCCSHHHHHHSCSHHHHT---STTCCHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHCCHHHHHH---CCCCCHHHHHHHHHHHHHHC
T ss_conf 96997499998689999977---67978999999999999874
No 11
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=38.06 E-value=8.1 Score=14.20 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999719999999997404962999999999999999
Q 002607 437 KDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478 (901)
Q Consensus 437 ~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Iv 478 (901)
+|+-++++|+.|++++|.+ -.|+-..+|+.|.+.++.+.
T Consensus 18 ~G~~tv~~l~~a~~eeL~~---i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 18 AGYIDFMKIATATVGELTD---IEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp HTCCSHHHHHTCCHHHHHT---STTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHCCHHHHHH---CCCCCHHHHHHHHHHHHHHC
T ss_conf 3699999998599999987---78989999999999999871
No 12
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.91 E-value=9.7 Score=13.70 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 6999999999719999999997404962999999999999999
Q 002607 436 TKDSLDWEAVRCADVNKIANTIKERGMNNMLAGRIKDFLNRLV 478 (901)
Q Consensus 436 ~~gllDpEaLA~Ad~EELeeLIRpaGFYr~KAkRIKalAk~Iv 478 (901)
.+|+.+.++|+.++.++|.+ --||-..+|..|++.++.++
T Consensus 28 ~aG~~Tv~~i~~at~~~L~~---i~G~~e~~A~KIi~~a~k~~ 67 (70)
T d1b22a_ 28 EAGFHTVEAVAYAPKKELIN---IKGISEAKADKILAEAAKLV 67 (70)
T ss_dssp TTCCSSGGGBTSSBHHHHHT---TTTCSTTHHHHHHHHHHHHS
T ss_pred HCCCCHHHHHHHCCHHHHHH---CCCCCHHHHHHHHHHHHHHC
T ss_conf 96863499998489999987---67978999999999999871
No 13
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.83 E-value=15 Score=12.36 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 6532578993456984238799999653115999989999999999816331258988888997200234430
Q 002607 485 DLEWLRDVPPDKAKYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFAS 557 (901)
Q Consensus 485 DLE~LrGIG~ETAdYPVdt~VqR~Le~~L~~ld~e~l~EfHaLLIefGK~iCtarKPkC~aCPLrd~C~yy~s 557 (901)
.|..|+|||+.+|. |+....|. .+.+...+|-..|.+.-+.+.. -+.|..=--.+.|.....
T Consensus 13 ~l~kLPGIG~KsA~--------Rla~~LL~-~~~~~~~~l~~~l~~~~~~I~~--C~~C~~l~e~~~C~iC~d 74 (199)
T d1vdda_ 13 ELSRLPGIGPKSAQ--------RLAFHLFE-QPREDIERLASALLEAKRDLHV--CPICFNITDAEKCDVCAD 74 (199)
T ss_dssp HHHTSTTCCHHHHH--------HHHHHHSS-SCHHHHHHHHHHHHHHHHHCEE--CSSSCCEESSSSCHHHHC
T ss_pred HHHHCCCCCHHHHH--------HHHHHHHC-CCHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCC
T ss_conf 99878998899999--------99999983-9988999999999999986098--988770426777441147
Done!