Query 002608
Match_columns 900
No_of_seqs 341 out of 1944
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:27:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 3E-110 7E-115 974.7 39.6 644 191-892 70-714 (714)
2 PRK10334 mechanosensitive chan 100.0 1.2E-35 2.7E-40 321.9 31.0 217 655-881 64-281 (286)
3 PRK11281 hypothetical protein; 100.0 1E-32 2.2E-37 339.7 40.8 218 655-881 873-1092(1113)
4 PRK10929 putative mechanosensi 100.0 1.5E-32 3.2E-37 337.2 33.1 227 654-889 869-1097(1109)
5 PF00924 MS_channel: Mechanose 100.0 1.9E-32 4.1E-37 281.0 21.2 203 662-868 2-206 (206)
6 PRK11465 putative mechanosensi 100.0 5.3E-30 1.2E-34 303.7 31.6 218 652-881 505-726 (741)
7 COG3264 Small-conductance mech 100.0 1.5E-30 3.4E-35 305.9 26.7 262 592-881 551-814 (835)
8 COG0668 MscS Small-conductance 100.0 3.4E-28 7.4E-33 263.1 32.5 212 659-880 86-300 (316)
9 COG5126 FRQ1 Ca2+-binding prot 83.5 2.3 5.1E-05 43.6 5.9 57 579-637 55-119 (160)
10 KOG0044 Ca2+ sensor (EF-Hand s 82.3 3.3 7.2E-05 43.7 6.6 84 578-663 62-152 (193)
11 cd00052 EH Eps15 homology doma 80.4 5.3 0.00011 33.3 6.1 55 583-638 2-61 (67)
12 cd05026 S-100Z S-100Z: S-100Z 79.1 7.2 0.00016 36.0 7.0 61 576-637 6-80 (93)
13 smart00027 EH Eps15 homology d 75.9 11 0.00024 34.6 7.3 62 579-641 9-75 (96)
14 cd05022 S-100A13 S-100A13: S-1 75.4 8.8 0.00019 35.5 6.5 63 576-639 4-76 (89)
15 cd05025 S-100A1 S-100A1: S-100 74.8 11 0.00024 34.3 7.0 60 577-637 6-79 (92)
16 PF00036 EF-hand_1: EF hand; 74.8 3.9 8.5E-05 30.1 3.2 27 610-637 1-27 (29)
17 cd00213 S-100 S-100: S-100 dom 74.5 12 0.00026 33.5 7.0 62 577-639 5-80 (88)
18 cd05023 S-100A11 S-100A11: S-1 74.3 9.4 0.0002 35.2 6.3 62 577-639 6-81 (89)
19 PF13499 EF-hand_7: EF-hand do 72.3 8.3 0.00018 32.4 5.2 52 583-635 3-65 (66)
20 cd05029 S-100A6 S-100A6: S-100 68.2 12 0.00027 34.3 5.7 61 578-639 8-80 (88)
21 KOG0027 Calmodulin and related 66.3 13 0.00028 36.9 5.9 61 581-642 45-117 (151)
22 cd05030 calgranulins Calgranul 64.9 22 0.00048 32.4 6.7 62 577-639 5-80 (88)
23 KOG0028 Ca2+-binding protein ( 64.5 12 0.00026 38.5 5.2 55 584-639 73-135 (172)
24 PTZ00183 centrin; Provisional 63.6 19 0.00042 34.9 6.5 56 580-636 90-152 (158)
25 KOG0034 Ca2+/calmodulin-depend 63.2 14 0.0003 38.8 5.6 62 579-641 65-135 (187)
26 PRK11281 hypothetical protein; 62.2 9.2 0.0002 50.0 4.9 76 300-378 810-898 (1113)
27 cd05031 S-100A10_like S-100A10 61.4 27 0.00059 31.9 6.6 59 577-636 5-77 (94)
28 PRK12309 transaldolase/EF-hand 60.2 17 0.00036 42.5 6.1 63 572-641 326-388 (391)
29 cd00051 EFh EF-hand, calcium b 57.1 27 0.00059 27.2 5.2 52 583-635 3-61 (63)
30 PLN02964 phosphatidylserine de 54.6 23 0.00051 43.8 6.4 59 579-638 178-243 (644)
31 PTZ00184 calmodulin; Provision 54.6 28 0.0006 33.2 5.7 56 580-636 84-146 (149)
32 cd05027 S-100B S-100B: S-100B 54.1 41 0.00088 30.9 6.4 61 577-638 5-79 (88)
33 PF13833 EF-hand_8: EF-hand do 53.3 32 0.00068 27.9 5.1 41 596-637 4-52 (54)
34 PTZ00184 calmodulin; Provision 52.9 29 0.00063 33.0 5.6 57 581-638 48-112 (149)
35 PRK10929 putative mechanosensi 51.6 19 0.00042 47.1 5.2 97 279-378 781-895 (1109)
36 PRK05585 yajC preprotein trans 47.0 39 0.00085 32.4 5.3 37 721-757 52-89 (106)
37 PRK05886 yajC preprotein trans 46.2 76 0.0017 30.8 7.1 37 721-757 38-75 (109)
38 smart00739 KOW KOW (Kyprides, 45.6 31 0.00067 24.2 3.4 21 721-741 1-26 (28)
39 PF04156 IncA: IncA protein; 44.0 79 0.0017 32.6 7.5 31 671-701 20-51 (191)
40 PF13405 EF-hand_6: EF-hand do 42.6 28 0.0006 25.4 2.8 26 611-637 2-27 (31)
41 PTZ00183 centrin; Provisional 41.8 58 0.0013 31.5 5.8 57 581-638 54-118 (158)
42 PF10003 DUF2244: Integral mem 36.8 1.9E+02 0.0041 28.9 8.6 53 676-741 27-79 (140)
43 TIGR00739 yajC preprotein tran 36.7 93 0.002 28.6 5.9 37 721-757 37-74 (84)
44 PF13202 EF-hand_5: EF hand; P 35.9 38 0.00082 24.0 2.5 22 612-634 2-23 (25)
45 PF09279 EF-hand_like: Phospho 35.6 60 0.0013 28.8 4.5 53 583-636 3-67 (83)
46 PF10329 DUF2417: Region of un 32.8 5.3E+02 0.011 28.4 11.7 23 389-411 176-198 (232)
47 COG5346 Predicted membrane pro 31.9 2.8E+02 0.006 27.7 8.4 11 693-703 118-128 (136)
48 cd05026 S-100Z S-100Z: S-100Z 31.8 59 0.0013 30.0 3.8 29 610-638 11-40 (93)
49 cd04466 S1_YloQ_GTPase S1_YloQ 30.7 66 0.0014 27.3 3.7 29 720-748 36-67 (68)
50 PHA02513 V1 structural protein 30.5 1.1E+02 0.0024 29.9 5.3 42 604-648 20-61 (135)
51 COG1862 YajC Preprotein transl 29.2 1.9E+02 0.0041 27.6 6.7 36 722-757 44-80 (97)
52 KOG1053 Glutamate-gated NMDA-t 29.1 1.6E+02 0.0034 38.0 7.7 36 370-405 613-652 (1258)
53 PF14023 DUF4239: Protein of u 28.8 3.2E+02 0.007 28.6 9.2 7 717-723 189-195 (209)
54 cd00252 SPARC_EC SPARC_EC; ext 28.6 1.7E+02 0.0036 28.5 6.5 59 577-636 45-106 (116)
55 PRK12281 rplX 50S ribosomal pr 27.5 1.2E+02 0.0026 27.6 4.8 22 721-742 6-32 (76)
56 PTZ00459 mucin-associated surf 26.1 33 0.00072 38.5 1.3 6 321-326 16-21 (291)
57 PF09926 DUF2158: Uncharacteri 25.9 63 0.0014 27.4 2.6 20 722-741 1-22 (53)
58 PRK12585 putative monovalent c 25.3 1.9E+02 0.0041 30.9 6.5 35 686-721 41-82 (197)
59 PRK14725 pyruvate kinase; Prov 25.2 2.1E+02 0.0045 35.5 7.8 83 720-802 371-468 (608)
60 KOG0027 Calmodulin and related 24.9 1.4E+02 0.0031 29.5 5.5 64 579-643 7-77 (151)
61 PRK11465 putative mechanosensi 24.6 1.9E+02 0.0041 36.7 7.5 54 361-414 432-486 (741)
62 PF03526 Microcin: Colicin E1 24.0 97 0.0021 26.5 3.3 36 397-432 8-43 (55)
63 PF09953 DUF2187: Uncharacteri 23.2 93 0.002 27.0 3.2 20 722-741 4-24 (57)
64 PF06341 DUF1056: Protein of u 23.2 3.4E+02 0.0073 24.1 6.5 48 656-708 6-54 (63)
65 cd05025 S-100A1 S-100A1: S-100 23.0 1.2E+02 0.0026 27.6 4.1 29 609-637 9-38 (92)
66 PF00467 KOW: KOW motif; Inte 23.0 1.3E+02 0.0028 22.5 3.6 18 724-741 1-23 (32)
67 COG5126 FRQ1 Ca2+-binding prot 22.6 1.5E+02 0.0032 30.7 5.1 51 585-636 97-154 (160)
68 PRK06531 yajC preprotein trans 21.6 2.2E+02 0.0047 27.9 5.7 38 722-759 37-76 (113)
69 PRK10263 DNA translocase FtsK; 21.2 1E+03 0.022 32.6 13.0 19 398-416 166-184 (1355)
70 PF12794 MscS_TM: Mechanosensi 21.2 3.1E+02 0.0067 31.4 7.9 39 339-380 109-147 (340)
71 PF14812 PBP1_TM: Transmembran 21.2 9.2 0.0002 35.1 -3.4 7 264-270 50-56 (81)
72 COG2139 RPL21A Ribosomal prote 20.8 1.3E+02 0.0028 28.7 3.8 35 720-754 31-80 (98)
73 PF05038 Cytochrom_B558a: Cyto 20.7 33 0.00071 35.8 0.0 44 286-350 17-60 (186)
74 PF13499 EF-hand_7: EF-hand do 20.7 97 0.0021 25.8 2.9 29 612-641 3-31 (66)
75 COG5416 Uncharacterized integr 20.4 85 0.0019 29.9 2.6 38 311-349 52-89 (98)
76 COG4873 Uncharacterized protei 20.4 84 0.0018 28.0 2.4 42 700-745 6-48 (81)
77 KOG3966 p53-mediated apoptosis 20.4 9.4E+02 0.02 27.3 10.8 86 312-423 132-217 (360)
78 PF14801 GCD14_N: tRNA methylt 20.2 59 0.0013 27.8 1.4 18 719-736 3-20 (54)
79 cd04461 S1_Rrp5_repeat_hs8_sc7 20.0 2.8E+02 0.006 24.6 5.8 58 722-784 12-69 (83)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.2e-110 Score=974.71 Aligned_cols=644 Identities=49% Similarity=0.813 Sum_probs=600.7
Q ss_pred ccCCCceeeecCCccccccCcCcccccccccccccccCCCCCcccccCCCCCCCCccccCCCCCCCCCCcccCCCCCchh
Q 002608 191 IRNQDEILRCTSNNLSFQRRPHTLTATLTRSKTRSRLQDPPPEEIIERIPKSGQLRSGLLGKMGGDDDDETVFGEDLPEE 270 (900)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 270 (900)
..+.+++++||++.++ +.+.+.+++||++|||-+.-.+++|++++..+|..++...|+||+++.++++++.
T Consensus 70 ~~~~~~~v~~t~~~~~---------~~~~~~~~~s~~f~p~~~~~~n~~~~~~~~~s~~~a~~~~~~e~~~~~~~~l~~~ 140 (714)
T KOG4629|consen 70 RTEYGETVRCTSRKMP---------SMIFFASKRSRDFDPAEPNNRNRFSNSGETTSGELAPSEKDEEESIFSEEKLPDE 140 (714)
T ss_pred ccCCcceEEeccccCh---------HhhhhhhhcccccCCCCCCCCCcccCccccccccccCCcccccccccchhccchh
Confidence 3467899999997442 5688899999999987555457999999999999998766899999999999999
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHhhhheecccCCceeeehhhHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhheee
Q 002608 271 FTRSKFSALIFIEWASLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKR 350 (900)
Q Consensus 271 ~k~~~~~~~~~~~w~~~i~~i~~Lv~sl~i~~~~~~~lw~~~lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk~ 350 (900)
.++.+.+++++++|+.+++++++++|+|+|+......+|.+..|+|++.+++++||++++.|.+.+++|++++|+++|++
T Consensus 141 ~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r~~ 220 (714)
T KOG4629|consen 141 TRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRRKK 220 (714)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccchhHHHHHH-HHHHHhhhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHH
Q 002608 351 LLYFVYGVKKPVQNCLWLG-LVLITWYNLFDSKVERETKSAILSYITKILVCLLIGTIVWLVKTLMIKVLASSFHVSTYF 429 (900)
Q Consensus 351 vlyfv~gl~k~v~~~lWl~-~vli~w~~l~~~~~~~~~~~~~l~~v~kvL~~llv~~~l~l~kkllvq~iA~sFH~~ty~ 429 (900)
++||++|+++.+|+|+|++ +++++|+.+|+..+.+.++.+.+.+++++ +|+|+.++.|++||+++|++|++||+++|+
T Consensus 221 ~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s~~~ 299 (714)
T KOG4629|consen 221 VLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAKFLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRSTYF 299 (714)
T ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHHHHH
Confidence 9999999999999999999 99999999999999888777789999999 999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHhhcCCchhhhcccchHHHHhhHHHHHhhhhCCCCCCCccccccccCCcccCCCCCCCCCCCccccc
Q 002608 430 DRIQESLFYQYVIETLSGPALLEIQMHDDEEERKTATEVNKLQNAGAVSPPDLRYAFAKSGKVIGKSSRDNKGSGKLSRA 509 (900)
Q Consensus 430 dRIqes~fn~y~L~tLs~~~l~~~~~~~~e~~~~~~~~~~~~~~~g~~~p~~~~~~~~ksg~~~~~~~~~~~~~~~~~~~ 509 (900)
+||||++|+||+|++|+|||+. | ++|+..+.+. ..++ ..++.
T Consensus 300 ~rI~e~~f~q~~l~~Lsg~p~~--------e------------~~gr~s~~~~-----------~~s~-------~~~r~ 341 (714)
T KOG4629|consen 300 SRIQESVFTQEVLETLSGPPRE--------E------------DVGRESTFRA-----------IFSP-------GLSRS 341 (714)
T ss_pred hhcchhhhhHHHHHHhcCCccc--------c------------ccccccccee-----------eccc-------cccch
Confidence 9999999999999999999871 1 2344322211 1111 11222
Q ss_pred ccCCCCCCCCCcccccccccCCCCcchhhHHHHHHHHhcCccccccccCCCCCCCCCcchhhccCHHHHHHHHHHHHHHh
Q 002608 510 SSKKGTNDHDGITIDHLHKLNPKNVSAWNMKRLVNMVRHGALITLDEQLPGQPPEADDSANQIRSEYEAKAAARKIFLNV 589 (900)
Q Consensus 510 ~~k~~~~~~~~I~~~~l~~~n~~~vsaw~mk~l~~~vr~~~lst~~~~l~~~~~~~~~~~~~i~S~~eAkalArrIF~~v 589 (900)
+. .+|+++++|++|..++|||+|+++|+.++.+++++++.+.+.+. .++....+++|+++|+++|++||.++
T Consensus 342 ~s-------~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~-~~~~~~~~i~s~~~a~~aA~~iF~nv 413 (714)
T KOG4629|consen 342 GS-------AKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLST-SKDSSIIEIRSEKEAKIAARKIFKNV 413 (714)
T ss_pred hh-------cccccchhhhhhHhhhcHhhhhHHHHHHhccCcccCCccccccc-cccchhhhhhhhhhHHHHHHHHHhcc
Confidence 21 12889999999999999999999999999999999999998733 26777889999999999999999999
Q ss_pred hccCCccccHhHHHhhCCHHHHHHHhHhhcccccccccchHHHHHHHHHHHHHhHhhhhhccchhHHHHHHHHHHHHHHH
Q 002608 590 ARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFA 669 (900)
Q Consensus 590 ~~~G~~~I~~eDl~~F~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ERk~L~~SLkD~~taV~~L~~Il~viv~ 669 (900)
+.||..+++++|+.+|+++|+|+.++.+|++.++.+ |+++.+++|++++|+||++|+++|+|++++|++|++++++++.
T Consensus 414 ~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~ 492 (714)
T KOG4629|consen 414 AKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVA 492 (714)
T ss_pred CCCCccchhhhhhhhcCCHHHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987666 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeEEEEEEEeeEEEEEEE
Q 002608 670 IIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLR 749 (900)
Q Consensus 670 II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~G~VeEI~LlsTvfrt 749 (900)
++++++++..+|+++.++++.++++.++++|+|+++++++|.|+||+|+.|||||||||.|||++++|+||+|++|+|.+
T Consensus 493 vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~ 572 (714)
T KOG4629|consen 493 VVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLR 572 (714)
T ss_pred HHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEecccccCCcEEeeecCCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCccccCCCEEEEEecCCCceeE
Q 002608 750 YDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHWCTAPMIILKDVEDFTRLR 829 (900)
Q Consensus 750 ~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~~~~p~p~V~v~~i~d~n~l~ 829 (900)
+||++|+|||++|++++|.|++||+.|.+.++|.++..|+++|++.|+++|.+|++++|++|+|.+.+.+.++++.|++.
T Consensus 573 ~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~ 652 (714)
T KOG4629|consen 573 VDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVK 652 (714)
T ss_pred ECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCCCCCCCCCCCCC
Q 002608 830 VAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERMPSS 892 (900)
Q Consensus 830 L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p~p~~~~~~P~~ 892 (900)
+++++.|+.||||+.++|.||.++++++.+.|+++||+|.++|+++++.+.| |+.+++.||+
T Consensus 653 i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~-~~~~d~~~~~ 714 (714)
T KOG4629|consen 653 ICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP-PVSSDRSPPM 714 (714)
T ss_pred EEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC-CcccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998 7888998874
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=1.2e-35 Score=321.91 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeE
Q 002608 655 TAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQ 734 (900)
Q Consensus 655 taV~~L~~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~ 734 (900)
+....+.+++.+++++++++++|..+|++++++++++|++++++||++|++++|++ ||++|++++||+|||+|+++|..
T Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~-sGi~i~~~rpf~vGD~I~i~~~~ 142 (286)
T PRK10334 64 TVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGGVA 142 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEECCEE
Confidence 45678889999999999999999999999999999999999999999999999955 99999999999999999999999
Q ss_pred EEEEEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCc-cccC
Q 002608 735 MIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKE-HWCT 813 (900)
Q Consensus 735 G~VeEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~-~~~p 813 (900)
|+|++|++++|++++.||+.|+|||+.+.++.|+|||+.+.++..+++.|+|++|+++ +++.+.+.+++++. ...|
T Consensus 143 G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~---~~~il~~~~~~~~~vl~~p 219 (286)
T PRK10334 143 GTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKDR 219 (286)
T ss_pred EEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHH---HHHHHHHHHHhCCceecCC
Confidence 9999999999999999999999999999999999999998889999999999999877 45667777878776 4678
Q ss_pred CCEEEEEecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCC
Q 002608 814 APMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVP 881 (900)
Q Consensus 814 ~p~V~v~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p 881 (900)
.|.+.+.+++| +++++.+++|++. ..+++.+++++.+++++|+++||++|+|++++++.+.+
T Consensus 220 ~p~v~~~~~~d-ssi~~~v~~wv~~-----~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~ 281 (286)
T PRK10334 220 EMTVRLNELGA-SSINFVVRVWSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVK 281 (286)
T ss_pred CCEEEEEeeeC-ceEEEEEEEEEec-----chhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCC
Confidence 89999999999 8999999999875 34688899999999999999999999999999997655
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=1e-32 Score=339.68 Aligned_cols=218 Identities=16% Similarity=0.230 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeE
Q 002608 655 TAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQ 734 (900)
Q Consensus 655 taV~~L~~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~ 734 (900)
.....+.+++.++++++++++++..+|++.+++.+.+|++++++||++|++++|+ .||++|++++||+|||+|+|+|..
T Consensus 873 ~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNf-ISGiiIl~eRPfrIGD~I~I~~~~ 951 (1113)
T PRK11281 873 GTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANF-VSGLIILFERPVRIGDTVTIGTFS 951 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcCCCCEEEECCEE
Confidence 4457788999999999999999999999999999999999999999999999995 599999999999999999999999
Q ss_pred EEEEEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCC-ceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCc-ccc
Q 002608 735 MIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPD-MGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKE-HWC 812 (900)
Q Consensus 735 G~VeEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~-~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~-~~~ 812 (900)
|+|++|++++|+++++||+.|+|||+.+.+..|+|||+++. ++..++|.|+|++|+++ +++.+.+.+++++. ...
T Consensus 952 G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~---v~~iL~eaa~~~p~Vl~~ 1028 (1113)
T PRK11281 952 GTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEK---VRELLLQAATENPRVMKE 1028 (1113)
T ss_pred EEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHcCcccccC
Confidence 99999999999999999999999999999999999999864 78999999999999777 56667777777775 477
Q ss_pred CCCEEEEEecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCC
Q 002608 813 TAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVP 881 (900)
Q Consensus 813 p~p~V~v~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p 881 (900)
|+|.|.+.+++| +++.+.+++|++ +.+.++..++++..+|+++|+++||++|+|+++||+.+.+
T Consensus 1029 P~P~V~~~~fgd-ssi~~~lr~wv~----~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~ 1092 (1113)
T PRK11281 1029 PEPQVFFLNFGA-STLDHELRLYVR----ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQK 1092 (1113)
T ss_pred CCCEEEEEeccC-ceEEEEEEEEEc----CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCC
Confidence 999999999999 999999999986 3467899999999999999999999999999999998755
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=337.22 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCe
Q 002608 654 KTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGV 733 (900)
Q Consensus 654 ~taV~~L~~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv 733 (900)
.+....+.+++.++++++++++++..+|++.+++.+.+|++|+++||++|++++|+ .|||+|++++||+|||+|+|+|.
T Consensus 869 ~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNf-iSGIiIL~erPfrVGD~I~I~~~ 947 (1109)
T PRK10929 869 PGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANF-ISGLIILFEKPIRIGDTVTIRDL 947 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCCEEEECCE
Confidence 35678899999999999999999999999999999999999999999999999995 59999999999999999999999
Q ss_pred EEEEEEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCC-ceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCc-cc
Q 002608 734 QMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPD-MGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKE-HW 811 (900)
Q Consensus 734 ~G~VeEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~-~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~-~~ 811 (900)
.|+|++|++++|+++++||+.|+|||+.+.++.|+|||+++. ++..++|.|+|++|+++ +++.+.+.+++++. ..
T Consensus 948 ~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~---v~~iL~eaa~~~~~VL~ 1024 (1109)
T PRK10929 948 TGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEE---VTEILLTAARRCSLVLD 1024 (1109)
T ss_pred EEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHhCccccC
Confidence 999999999999999999999999999999999999999875 68999999999999776 56667777777776 46
Q ss_pred cCCCEEEEEecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCCCCCCCCCC
Q 002608 812 CTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPAPIVSERM 889 (900)
Q Consensus 812 ~p~p~V~v~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p~p~~~~~~ 889 (900)
.|.|.|.+.++++ +++.+.+++|++ +...++..+++++.+|+++|+++||++|+|+++||+.+.+....+.+.
T Consensus 1025 ~P~P~V~~~~fgd-ssi~~elr~wv~----~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~~~~~~~~~ 1097 (1109)
T PRK10929 1025 NPAPEVFLVDLQQ-GIQIFELRIYAA----EMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGGKQTGRTL 1097 (1109)
T ss_pred CCCCEEEEEecCC-CceEEEEEEEEc----ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCCCCCCCcCC
Confidence 7999999999998 888888888885 336789999999999999999999999999999999988753333333
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=1.9e-32 Score=280.96 Aligned_cols=203 Identities=27% Similarity=0.435 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeEEEEEEEe
Q 002608 662 KLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMN 741 (900)
Q Consensus 662 ~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~G~VeEI~ 741 (900)
+++.++++++++++++.++|++.+++++++|++++++||++|++++|++ ||++|++++||++||||+|+|..|.|++|+
T Consensus 2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhcC
Confidence 5788899999999999999999999999999999999999999999966 889999999999999999999999999999
Q ss_pred eEEEEEEEeCCcEEEEecccccCCcEEeeec-CCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCccc-cCCCEEEE
Q 002608 742 VLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQ-SPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEHW-CTAPMIIL 819 (900)
Q Consensus 742 LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SR-S~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~~~-~p~p~V~v 819 (900)
+++|+++++||+.++|||+.+.+++|.|+|| ++.++..+.+.+++++++++++++.+.+.+.+++++... .+.|.+.+
T Consensus 81 l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 160 (206)
T PF00924_consen 81 LRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVVV 160 (206)
T ss_dssp SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEEE
T ss_pred cceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEEE
Confidence 9999999999999999999999999999999 889999999999999999999999999999998888654 47788888
Q ss_pred EecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 002608 820 KDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQY 868 (900)
Q Consensus 820 ~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey 868 (900)
..+++ +++++.++++++. +++.+++..|++++.+++++|+++||++
T Consensus 161 ~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 161 DEIGD-SSLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEE-S-SSEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccC-CceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 88888 8999999999876 4567889999999999999999999985
No 6
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.97 E-value=5.3e-30 Score=303.67 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=189.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEc
Q 002608 652 DTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVD 731 (900)
Q Consensus 652 D~~taV~~L~~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~Id 731 (900)
..+++...+.+++.+++++++++++|..+|++++++++++|++|+++||++|++++|++ ||+||++++||+|||+|+++
T Consensus 505 r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i-sGi~Il~e~pf~vGD~I~v~ 583 (741)
T PRK11465 505 RTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII-TGVFIQFENGMNTGDLVTIG 583 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEEC
Confidence 35788999999999999999999999999999999999999999999999999999955 99999999999999999999
Q ss_pred CeEEEEEEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCc--
Q 002608 732 GVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKE-- 809 (900)
Q Consensus 732 Gv~G~VeEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~-- 809 (900)
|+.|+||+|++++|+++++||..++|||+.+.+ |.|++|. .++..+++.|+|++|.+++.++.+++.+-+.+++.
T Consensus 584 g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~ 660 (741)
T PRK11465 584 PLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR 660 (741)
T ss_pred CeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999999999999999975 9999987 44688899999999999866555554444444443
Q ss_pred --cccCCCEEEEEecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCC
Q 002608 810 --HWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVP 881 (900)
Q Consensus 810 --~~~p~p~V~v~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p 881 (900)
...+.+.+.+.+++| +++.++++++++. +.+|..+.+++.++++.|+++||++|+ +++++...|
T Consensus 661 ~~il~~p~~vgV~~lgd-Ssi~lrvr~~t~p-----~~qw~v~rel~~~IK~~Fde~GIeIP~--~tv~v~~~~ 726 (741)
T PRK11465 661 GLIIGEPNFAGIVGLTN-TAFTLRVSFTTLP-----LKQWTVRFALDSQVKKHFDLAGVRAPV--QTYQVLPAP 726 (741)
T ss_pred ccccCCCCeEEEEEecC-ceEEEEEEEEECc-----chHHHHHHHHHHHHHHHHHHCCCCCCC--CceEeecCC
Confidence 122334578899999 8999999999864 577999999999999999999999855 555565544
No 7
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-30 Score=305.95 Aligned_cols=262 Identities=18% Similarity=0.238 Sum_probs=232.7
Q ss_pred cCCccccHhHHHhhCCHHHHHHHhHhhcccccccccchHHHHHHHHHHHHHhHhhhhhccchhHHHHHHHHHHHHHHHHH
Q 002608 592 YGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTLNDTKTAVKKLHKLVNVVFAII 671 (900)
Q Consensus 592 ~G~~~I~~eDl~~F~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ERk~L~~SLkD~~taV~~L~~Il~viv~II 671 (900)
.|...|++-++. .|.-+|.. +.+--..+.+|+......|-+++.+.+ ..+.+++.|+++.+
T Consensus 551 ~g~~~isl~~ll---------~avl~~~~----~~~l~r~~~~~L~~~vl~r~~~~~G~r------~~I~t~~~Y~~~~i 611 (835)
T COG3264 551 LGVESITLGALL---------QAVLLFLI----TYVLTRNLPGWLEVRVLQRLDLDAGTR------YSITTLLGYLLIAI 611 (835)
T ss_pred cceeEeeHHHHH---------HHHHHHHH----HHHHHHHHHHHHHHHHHHhcccCcchH------HHHHHHHHHHHHHH
Confidence 678888888877 34444431 234445677788778888888888775 77889999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeEEEEEEEeeEEEEEEEeC
Q 002608 672 ILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMNVLTTVFLRYD 751 (900)
Q Consensus 672 ~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~G~VeEI~LlsTvfrt~D 751 (900)
+.++.++.+|++.+++..++|++++++||++|+..+| |.||++|++++||+|||+|++++..|+|.+|+.+.|+++++|
T Consensus 612 ~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~N-FVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd 690 (835)
T COG3264 612 GGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSN-FVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFD 690 (835)
T ss_pred HHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHH-hhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCC
Confidence 9999999999999999999999999999999999999 679999999999999999999999999999999999999999
Q ss_pred CcEEEEecccccCCcEEeeecCC-CceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCc-cccCCCEEEEEecCCCceeE
Q 002608 752 NLKIIYPNGVLSTKPIHNFYQSP-DMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKE-HWCTAPMIILKDVEDFTRLR 829 (900)
Q Consensus 752 G~~V~IPNS~L~tk~I~N~SRS~-~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~-~~~p~p~V~v~~i~d~n~l~ 829 (900)
++.|++||+.+.+..+.||+.++ ..+..|.|.++|++|+++ +++.+.+..+.+|. ..+|+|.+.+.++++ +.++
T Consensus 691 ~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~---V~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~-s~L~ 766 (835)
T COG3264 691 RKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPEL---VRELLLEAAREHPRVLKDPAPEVFFTAFGA-SSLD 766 (835)
T ss_pred CCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHH---HHHHHHHHHHhCCCccCCCCCeeEeecccc-ccee
Confidence 99999999999999999999885 688999999999999888 56777888888886 588999999999999 9999
Q ss_pred EEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccCC
Q 002608 830 VAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVP 881 (900)
Q Consensus 830 L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~p 881 (900)
+.+++|... ...+...++++...|.+.|+|+||++|+||.+|++++.+
T Consensus 767 fELr~~v~~----~~~~~~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~~~~ 814 (835)
T COG3264 767 FELRVYVAE----LGDRMPVRSELNRAILDRFRENGIEIPFPQREVRLKNDG 814 (835)
T ss_pred EEEEEEeec----cccccchHHHHHHHHHHHHHHcCCCCCCchHheEecCCc
Confidence 999999864 455666999999999999999999999999999999833
No 8
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.4e-28 Score=263.07 Aligned_cols=212 Identities=20% Similarity=0.302 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEc-CeEEEE
Q 002608 659 KLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVD-GVQMIV 737 (900)
Q Consensus 659 ~L~~Il~viv~II~iii~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~Id-Gv~G~V 737 (900)
.+.+++.+++++++++++|..+|++.+++++++|.+++++||++|++++|++ +|+++.++|||++||+|+++ +..|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~-~Gi~il~~~~f~vGD~I~i~~~~~G~V 164 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPFKVGDWIEIGSGVEGTV 164 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHhheecCcCcCCEEEECCCceEEE
Confidence 7889999999999999999999999999999999999999999999999966 99999999999999999999 799999
Q ss_pred EEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCCceEEEEEEEeeCCCHHHHHHHHHHHHHHHhcCCcc--ccCCC
Q 002608 738 EEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEH--WCTAP 815 (900)
Q Consensus 738 eEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V~~~Td~ekIe~Lke~I~~~l~s~~~~--~~p~p 815 (900)
++|++++|+++++||+.++|||+.+.+..|.|+++.+.++..+++.|+|++|.+++..+..++.+ ..+.+ ..|.|
T Consensus 165 ~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~ 241 (316)
T COG0668 165 EDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILKEVLE---ELPEVLKIEPEP 241 (316)
T ss_pred EEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHHHHHH---hcccccccCCCc
Confidence 99999999999999999999999999999999999988889999999999998886555444444 44443 37889
Q ss_pred EEEEEecCCCceeEEEEEEEEecCccChhhHHHHHHHHHHHHHHHHHHCCCccccCceEEEeccC
Q 002608 816 MIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSV 880 (900)
Q Consensus 816 ~V~v~~i~d~n~l~L~V~i~~k~N~Qn~~~r~~rRsel~~aI~k~L~elGIey~~Pp~~V~i~~~ 880 (900)
.+.+.++++ +++.+.++++++. ...+..++++...++++++++||++|+|++.++....
T Consensus 242 ~v~~~~~~~-~~~~i~v~~~t~~-----~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~ 300 (316)
T COG0668 242 VIGVSELGD-SGINIRVRFWTNP-----EDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGEL 300 (316)
T ss_pred EEEEeeccC-CceEEEEEEEecc-----hhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCC
Confidence 999999999 9999999999865 3489999999999999999999999999999994443
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=83.50 E-value=2.3 Score=43.56 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhccCCccccHhHHHhhC--------CHHHHHHHhHhhcccccccccchHHHHHHHH
Q 002608 579 KAAARKIFLNVARYGSKHIYLEDLMRFM--------QEEEAVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~I~~eDl~~F~--------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
.+.+.+++..+-. |..+|..++|+.++ .+++...||.+||. +.+|.|+..+|+.++.
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~-d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDK-DHDGYISIGELRRVLK 119 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCC-CCCceecHHHHHHHHH
Confidence 5677888888877 89999999998766 36789999999996 6899999999998775
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.26 E-value=3.3 Score=43.67 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhccCCccccHhHHHhhC----C---HHHHHHHhHhhcccccccccchHHHHHHHHHHHHHhHhhhhhc
Q 002608 578 AKAAARKIFLNVARYGSKHIYLEDLMRFM----Q---EEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALALTL 650 (900)
Q Consensus 578 AkalArrIF~~v~~~G~~~I~~eDl~~F~----~---~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ERk~L~~SL 650 (900)
+...|+++|..+-..+..+|..+|+..-+ + ++...-+|.++|. +++|.|++.+|...+..+|.--......
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~-dgdG~It~~Eml~iv~~i~~m~~~~~~~- 139 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDL-DGDGYITKEEMLKIVQAIYQMTGSKALP- 139 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecC-CCCceEcHHHHHHHHHHHHHHcccccCC-
Confidence 78999999999999999999999966422 1 4557788999996 6999999999998887777654442222
Q ss_pred cchhHHHHHHHHH
Q 002608 651 NDTKTAVKKLHKL 663 (900)
Q Consensus 651 kD~~taV~~L~~I 663 (900)
.+.++.-...+.+
T Consensus 140 ~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 140 EDEETPEERVDKI 152 (193)
T ss_pred cccccHHHHHHHH
Confidence 3444555555544
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=80.45 E-value=5.3 Score=33.26 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=43.2
Q ss_pred HHHHHHhhccCCccccHhHHHhhC-----CHHHHHHHhHhhcccccccccchHHHHHHHHH
Q 002608 583 RKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 583 rrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~ 638 (900)
+++|..+-..+..+|+.+++..++ +++++...+..++. ..+|.|+.+++...+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADT-DKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCcCCHHHHHHHHHH
Confidence 457777777778899999988765 56788999999986 47899999988765543
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=79.08 E-value=7.2 Score=35.99 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhc-cCCc-cccHhHHHhhCC------------HHHHHHHhHhhcccccccccchHHHHHHHH
Q 002608 576 YEAKAAARKIFLNVAR-YGSK-HIYLEDLMRFMQ------------EEEAVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 576 ~eAkalArrIF~~v~~-~G~~-~I~~eDl~~F~~------------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
..|..-++++|..+.. .|.. +|+.++|...+. +++.++.+.-+|. +.+|.|+.++|...+.
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~-n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS-NKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHH
Confidence 4578888999999994 5765 599999987652 3468889999986 5889999999976554
No 13
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=75.88 E-value=11 Score=34.62 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccCCccccHhHHHhhC-----CHHHHHHHhHhhcccccccccchHHHHHHHHHHHH
Q 002608 579 KAAARKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFR 641 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ 641 (900)
..-.+.+|..+-..+..+|+.+++.+++ +++++...+..++. ..+|.|+.++|...+..+.+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~-~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADI-DNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHHHHH
Confidence 4467788888887888899999998754 56789999999986 57899999999876655444
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=75.44 E-value=8.8 Score=35.50 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhc-cCCccccHhHHHhhC--------CH-HHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 576 YEAKAAARKIFLNVAR-YGSKHIYLEDLMRFM--------QE-EEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 576 ~eAkalArrIF~~v~~-~G~~~I~~eDl~~F~--------~~-eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
..|...-+.+|+.+.+ .|..+|+.++|...+ .. +++++.|.-+|. +.+|.|+.++|...+..+
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDV-NQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCC-CCCCCCcHHHHHHHHHHH
Confidence 3577788899999998 888999999987644 23 678888888886 589999999998766544
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=74.83 E-value=11 Score=34.32 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhh-ccCCcc-ccHhHHHhhC------------CHHHHHHHhHhhcccccccccchHHHHHHHH
Q 002608 577 EAKAAARKIFLNVA-RYGSKH-IYLEDLMRFM------------QEEEAVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 577 eAkalArrIF~~v~-~~G~~~-I~~eDl~~F~------------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
.|..-.+++|..+. +.|..+ |+.++|...+ .++++++.|..+|. +.+|.|+.+++...+.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~-d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDE-NGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC-CCCCcCcHHHHHHHHH
Confidence 46677888999996 888884 9999988654 34678899999986 5789999998875443
No 16
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=74.75 E-value=3.9 Score=30.07 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.7
Q ss_pred HHHHHhHhhcccccccccchHHHHHHHH
Q 002608 610 EAVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 610 eA~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
|.+++|..||. +.+|.|+.++|+..+.
T Consensus 1 E~~~~F~~~D~-d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDK-DGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC-CCCCcCCHHHHHHHHH
Confidence 46789999997 6999999999987653
No 17
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=74.45 E-value=12 Score=33.55 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhc--cCCccccHhHHHhhCC------------HHHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 577 EAKAAARKIFLNVAR--YGSKHIYLEDLMRFMQ------------EEEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 577 eAkalArrIF~~v~~--~G~~~I~~eDl~~F~~------------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
+...-++.+|..+-. .|..+|+.++|..++. .+++...+..|+. ..+|.|+.+++...+...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~-~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDV-NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcc-CCCCcCcHHHHHHHHHHH
Confidence 345557888999987 6888999999886541 5778899999986 578999999998766544
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=74.34 E-value=9.4 Score=35.19 Aligned_cols=62 Identities=11% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHH-hhccCCc-cccHhHHHhhCCH------------HHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 577 EAKAAARKIFLN-VARYGSK-HIYLEDLMRFMQE------------EEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 577 eAkalArrIF~~-v~~~G~~-~I~~eDl~~F~~~------------eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
.|...-..+|.. +.+.|.. +|+.++|..++.. +++++.+.-+|. +.+|.|+.+++...+..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~-d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDL-NSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 456666788888 4455754 9999999987743 468888888875 588999999998777554
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=72.34 E-value=8.3 Score=32.38 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=40.8
Q ss_pred HHHHHHhhccCCccccHhHHHhhC---C----H----HHHHHHhHhhcccccccccchHHHHHH
Q 002608 583 RKIFLNVARYGSKHIYLEDLMRFM---Q----E----EEAVKTMSLFEGSKENGRISKSSLKNW 635 (900)
Q Consensus 583 rrIF~~v~~~G~~~I~~eDl~~F~---~----~----eeA~~af~lFdg~~~nG~Is~~~l~~~ 635 (900)
+++|..+-..+..+|+.+||..++ . + +.+..+|..+|. +.+|.|+.+++...
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDT-DGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTT-TSSSSEEHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-CCcCCCcHHHHhcc
Confidence 578888888889999999988654 1 3 345566999986 58999999999764
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=68.22 E-value=12 Score=34.31 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhc-cC-CccccHhHHHhhC----------CHHHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 578 AKAAARKIFLNVAR-YG-SKHIYLEDLMRFM----------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 578 AkalArrIF~~v~~-~G-~~~I~~eDl~~F~----------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
|...-=.+|..+.. .| ..+|+.++|..++ .++++++.|.-+|. +.+|.|+.++|...+..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~-d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR-NKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHH
Confidence 44444567888875 56 6699999988655 45788999988886 588999999997666543
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=66.34 E-value=13 Score=36.90 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccCCccccHhHHHhhCC------------HHHHHHHhHhhcccccccccchHHHHHHHHHHHHH
Q 002608 581 AARKIFLNVARYGSKHIYLEDLMRFMQ------------EEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRE 642 (900)
Q Consensus 581 lArrIF~~v~~~G~~~I~~eDl~~F~~------------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~E 642 (900)
-.+.++..+-..|...|..++|...+. .++..+||.+||. +++|.|+..+|+..+.+...+
T Consensus 45 el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~-d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 45 ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDK-DGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHcc-CCCCcCcHHHHHHHHHHhCCc
Confidence 344556666667888999999886543 2388999999997 599999999999877665443
No 22
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=64.90 E-value=22 Score=32.41 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhcc-C-CccccHhHHHhhCC------------HHHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 577 EAKAAARKIFLNVARY-G-SKHIYLEDLMRFMQ------------EEEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 577 eAkalArrIF~~v~~~-G-~~~I~~eDl~~F~~------------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
+|..-.-.+|...+.. | ..+|+.++|...|. ++++...|..+|. +.+|.|+.++|...+...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~-d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDT-NQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 4666677888888754 2 56899999886553 6779999999986 578999999998655443
No 23
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=64.50 E-value=12 Score=38.54 Aligned_cols=55 Identities=35% Similarity=0.546 Sum_probs=43.7
Q ss_pred HHHHHhhccCCccccHhHHHhhC--------CHHHHHHHhHhhcccccccccchHHHHHHHHHH
Q 002608 584 KIFLNVARYGSKHIYLEDLMRFM--------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 584 rIF~~v~~~G~~~I~~eDl~~F~--------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i 639 (900)
++..-+-+.|...|+.+||.+.+ +.+|+..||.+||. +.+|+|+...|+....+.
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~-D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDD-DKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccc-cCCCCcCHHHHHHHHHHh
Confidence 34455667788999999998764 46899999999995 699999999998655443
No 24
>PTZ00183 centrin; Provisional
Probab=63.57 E-value=19 Score=34.87 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhccCCccccHhHHHhh-------CCHHHHHHHhHhhcccccccccchHHHHHHH
Q 002608 580 AAARKIFLNVARYGSKHIYLEDLMRF-------MQEEEAVKTMSLFEGSKENGRISKSSLKNWV 636 (900)
Q Consensus 580 alArrIF~~v~~~G~~~I~~eDl~~F-------~~~eeA~~af~lFdg~~~nG~Is~~~l~~~v 636 (900)
...+.+|..+-..+..+|+.+++..+ +.++++..+|..|+. +.+|.|+.+++...+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADR-NGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHH
Confidence 34578898888888889999998865 457789999999986 478999999887544
No 25
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=63.16 E-value=14 Score=38.85 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCCcc-ccHhHHHhhC----C----HHHHHHHhHhhcccccccccchHHHHHHHHHHHH
Q 002608 579 KAAARKIFLNVARYGSKH-IYLEDLMRFM----Q----EEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFR 641 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~-I~~eDl~~F~----~----~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ 641 (900)
--++.+|+..+-..+... |..+++.+.+ + ++...-||.++|- ..+|.|+++++...+.....
T Consensus 65 Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~-~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 65 NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDL-DGDGFISREELKQILRMMVG 135 (187)
T ss_pred CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcC-CCCCcCcHHHHHHHHHHHHc
Confidence 357888888887666666 9999998754 2 3478899999996 58999999999987765544
No 26
>PRK11281 hypothetical protein; Provisional
Probab=62.24 E-value=9.2 Score=49.97 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=39.0
Q ss_pred ecccCCceeeehh-------------hHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhheeeEEEEEeccccchhHHH
Q 002608 300 IHEIKKKSLWDLK-------------LWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCL 366 (900)
Q Consensus 300 i~~~~~~~lw~~~-------------lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk~vlyfv~gl~k~v~~~l 366 (900)
++.+.+.++|+.. ++.....+++++.+++++.++.+++--++.....++.... |.+.+.+..++
T Consensus 810 ~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~---~~i~~li~y~I 886 (1113)
T PRK11281 810 FSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTS---YAITTLLTYII 886 (1113)
T ss_pred HHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHH---HHHHHHHHHHH
Confidence 5566788888644 4544444555555555555544433222111111212122 22445566678
Q ss_pred HHHHHHHHhhhh
Q 002608 367 WLGLVLITWYNL 378 (900)
Q Consensus 367 Wl~~vli~w~~l 378 (900)
|++.+++++..+
T Consensus 887 ~~i~iliaL~~l 898 (1113)
T PRK11281 887 IAVGAVTAFSTL 898 (1113)
T ss_pred HHHHHHHHHHHc
Confidence 888887777654
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=61.39 E-value=27 Score=31.93 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhc-cC-CccccHhHHHhhC------------CHHHHHHHhHhhcccccccccchHHHHHHH
Q 002608 577 EAKAAARKIFLNVAR-YG-SKHIYLEDLMRFM------------QEEEAVKTMSLFEGSKENGRISKSSLKNWV 636 (900)
Q Consensus 577 eAkalArrIF~~v~~-~G-~~~I~~eDl~~F~------------~~eeA~~af~lFdg~~~nG~Is~~~l~~~v 636 (900)
.|....+.+|..+.. .| ..+|+.++|...+ .++++...+..+|. +.+|.|+.++|...+
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~-~~dg~I~f~eF~~l~ 77 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQ-NRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCC-CCCCcCcHHHHHHHH
Confidence 456667778888876 65 5899999988543 34678889999986 578999999997544
No 28
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=60.25 E-value=17 Score=42.49 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=51.5
Q ss_pred ccCHHHHHHHHHHHHHHhhccCCccccHhHHHhhCCHHHHHHHhHhhcccccccccchHHHHHHHHHHHH
Q 002608 572 IRSEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFR 641 (900)
Q Consensus 572 i~S~~eAkalArrIF~~v~~~G~~~I~~eDl~~F~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ 641 (900)
+.+-...+..++.+|..+-..|..+|+.+|+.. ++..|..||. +++|.|+.++|+..+...|+
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~-d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDL-NHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCC-CCCCCCcHHHHHHHHHHHHH
Confidence 344445788889999999989999999999852 6788999996 58999999999987766654
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=57.13 E-value=27 Score=27.22 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHhhccCCccccHhHHHhhC-------CHHHHHHHhHhhcccccccccchHHHHHH
Q 002608 583 RKIFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNW 635 (900)
Q Consensus 583 rrIF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lFdg~~~nG~Is~~~l~~~ 635 (900)
+.+|..+-..+...|+.+++...+ ..+++..+|..++. ..+|.|+.+++...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDK-DGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC-CCCCeEeHHHHHHH
Confidence 456776666666788888877543 35667888888875 47889999988653
No 30
>PLN02964 phosphatidylserine decarboxylase
Probab=54.64 E-value=23 Score=43.77 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhccCCccccHhHHHhhC-------CHHHHHHHhHhhcccccccccchHHHHHHHHH
Q 002608 579 KAAARKIFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~ 638 (900)
...++++|..+-..|...|+.++|..++ .+++..++|..||. +.+|.|+.++|+..+..
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDk-DgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADL-NGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCC-CCCCcCCHHHHHHHHHh
Confidence 3468888888877888899999987543 46789999999997 58999999999876654
No 31
>PTZ00184 calmodulin; Provisional
Probab=54.62 E-value=28 Score=33.18 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhccCCccccHhHHHhhC-------CHHHHHHHhHhhcccccccccchHHHHHHH
Q 002608 580 AAARKIFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNWV 636 (900)
Q Consensus 580 alArrIF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lFdg~~~nG~Is~~~l~~~v 636 (900)
..++.+|..+-..|..+|+.+++..++ ..+++...|..+|. ..+|.|+.+++...+
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV-DGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCC-CCCCcCcHHHHHHHH
Confidence 345778888877888899999987654 56778888888876 478899988886543
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=54.09 E-value=41 Score=30.91 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhh-ccCCc-cccHhHHHhhCC------------HHHHHHHhHhhcccccccccchHHHHHHHHH
Q 002608 577 EAKAAARKIFLNVA-RYGSK-HIYLEDLMRFMQ------------EEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 577 eAkalArrIF~~v~-~~G~~-~I~~eDl~~F~~------------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~ 638 (900)
.|..--+.+|..+. +.|.. +|..++|...|. ++++++.+.-+|. +.+|.|+.+++...+..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~-n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDS-DGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHH
Confidence 46777888999997 67888 599998765432 4668889988886 58899999998765543
No 33
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=53.35 E-value=32 Score=27.86 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred cccHhHHHhh--------CCHHHHHHHhHhhcccccccccchHHHHHHHH
Q 002608 596 HIYLEDLMRF--------MQEEEAVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 596 ~I~~eDl~~F--------~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
.|+.++|..+ ++++++...|..||. +.+|.|+.+++...+.
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~-~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDRLFREFDT-DGDGYISFDEFISMMQ 52 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTT-SSSSSEEHHHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHHHHHhccc-CCCCCCCHHHHHHHHH
Confidence 4556665542 567789999999996 5999999999986553
No 34
>PTZ00184 calmodulin; Provisional
Probab=52.94 E-value=29 Score=33.04 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccCCccccHhHHHhhCC--------HHHHHHHhHhhcccccccccchHHHHHHHHH
Q 002608 581 AARKIFLNVARYGSKHIYLEDLMRFMQ--------EEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 581 lArrIF~~v~~~G~~~I~~eDl~~F~~--------~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~ 638 (900)
..+++|..+...+...|..+++..++. .+.+..+|..+|. +++|.|+++++...+..
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDR-DGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCC-CCCCeEeHHHHHHHHHH
Confidence 457788878777888999999886442 3468899999986 58899999999877754
No 35
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=51.64 E-value=19 Score=47.09 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHh--hhhee---cccCCceeee-------------hhhHHHHHHHHHHHhhhhhhhhhhhhhhhe
Q 002608 279 LIFIEWASLILIVAALL--CSLLI---HEIKKKSLWD-------------LKLWKWEVMVLVLICGRLVSGWGIRLIVFF 340 (900)
Q Consensus 279 ~~~~~w~~~i~~i~~Lv--~sl~i---~~~~~~~lw~-------------~~lw~W~v~~lvl~~grlVs~w~~~~~v~~ 340 (900)
+-+++-+++++.++++. |+-.+ ..+.++++|. +.++...+.+++++.|++++.|+++++--.
T Consensus 781 lrL~r~~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~ 860 (1109)
T PRK10929 781 LRLVRSILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELA 860 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555443 44444 3568999997 346766666777777777777777666432
Q ss_pred eehhhhheeeEEEEEeccccchhHHHHHHHHHHHhhhh
Q 002608 341 IERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNL 378 (900)
Q Consensus 341 ie~nfllrk~vlyfv~gl~k~v~~~lWl~~vli~w~~l 378 (900)
+.....+.....| .+.+-+..++|++.+++++..+
T Consensus 861 l~~~~~l~~~~~~---~i~~l~~y~I~~ig~l~~L~~l 895 (1109)
T PRK10929 861 LLQHLDLTPGTGY---AITTITKYLLMLIGGLVGFSMI 895 (1109)
T ss_pred HhhhcCCChhHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 2111111111111 2233455566776666666543
No 36
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=46.98 E-value=39 Score=32.44 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=27.0
Q ss_pred CccCCCEEE-EcCeEEEEEEEeeEEEEEEEeCCcEEEE
Q 002608 721 PFDVGDRCE-VDGVQMIVEEMNVLTTVFLRYDNLKIIY 757 (900)
Q Consensus 721 PFdVGDrI~-IdGv~G~VeEI~LlsTvfrt~DG~~V~I 757 (900)
-.++||+|. ++|..|+|.+|+=-+.++...+|.++.+
T Consensus 52 ~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~ 89 (106)
T PRK05585 52 SLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKI 89 (106)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 368999995 5899999999986544555556655544
No 37
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=46.17 E-value=76 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=25.5
Q ss_pred CccCCCEEEE-cCeEEEEEEEeeEEEEEEEeCCcEEEE
Q 002608 721 PFDVGDRCEV-DGVQMIVEEMNVLTTVFLRYDNLKIIY 757 (900)
Q Consensus 721 PFdVGDrI~I-dGv~G~VeEI~LlsTvfrt~DG~~V~I 757 (900)
-.++||+|.. +|..|+|.+|+=-+.++...+|.++.+
T Consensus 38 ~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 38 SLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred hcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3689999976 789999999985444444344544443
No 38
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=45.64 E-value=31 Score=24.19 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=16.9
Q ss_pred CccCCCEEEEc-----CeEEEEEEEe
Q 002608 721 PFDVGDRCEVD-----GVQMIVEEMN 741 (900)
Q Consensus 721 PFdVGDrI~Id-----Gv~G~VeEI~ 741 (900)
+|.+||.|.|- |..|.|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 57899999993 5788888875
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.05 E-value=79 Score=32.59 Aligned_cols=31 Identities=13% Similarity=0.122 Sum_probs=13.9
Q ss_pred HHHHHHHhhcccchhH-HHHHHHHHHHHHHHH
Q 002608 671 IILVIWLLILKIATTE-FLLFLSSQLVLVAFV 701 (900)
Q Consensus 671 I~iii~L~ilGi~~t~-lla~~Gs~gLaLgFa 701 (900)
++.++.|.+++...+. +.+.+|...+|+|.+
T Consensus 20 ~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~v 51 (191)
T PF04156_consen 20 ASGIAALVLFISGLGALISFILGIALLALGVV 51 (191)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444443332 233445555555554
No 40
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=42.56 E-value=28 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHHHhHhhcccccccccchHHHHHHHH
Q 002608 611 AVKTMSLFEGSKENGRISKSSLKNWVV 637 (900)
Q Consensus 611 A~~af~lFdg~~~nG~Is~~~l~~~vv 637 (900)
-..+|..||. +.+|.|+.++|...+.
T Consensus 2 l~~~F~~~D~-d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDK-DGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-T-TSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCC-CCCCcCcHHHHHHHHH
Confidence 3579999997 5899999999987664
No 41
>PTZ00183 centrin; Provisional
Probab=41.78 E-value=58 Score=31.51 Aligned_cols=57 Identities=28% Similarity=0.508 Sum_probs=44.3
Q ss_pred HHHHHHHHhhccCCccccHhHHHhhC--------CHHHHHHHhHhhcccccccccchHHHHHHHHH
Q 002608 581 AARKIFLNVARYGSKHIYLEDLMRFM--------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 581 lArrIF~~v~~~G~~~I~~eDl~~F~--------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~ 638 (900)
....+|..+-..+...|..+++...+ ..++.+.+|..||. +.+|.|+..++...+..
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDD-DKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHH
Confidence 46677777777788889998887543 24568899999986 58999999999887754
No 42
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=36.83 E-value=1.9e+02 Score=28.87 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcCCccCCCEEEEcCeEEEEEEEe
Q 002608 676 WLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDGVQMIVEEMN 741 (900)
Q Consensus 676 ~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn~f~SgIFLfv~hPFdVGDrI~IdGv~G~VeEI~ 741 (900)
.+.++..-...++.++|.-.++++++|.-.. +--+..++|.|++....|.+++
T Consensus 27 a~~f~~~GaW~Vl~F~glev~~l~~a~~~~~-------------r~~~~~E~I~l~~~~~~~~~~~ 79 (140)
T PF10003_consen 27 AIAFLLMGAWPVLPFAGLEVLALWYAFRRNY-------------RHARDYERITLSPDDLLVVRVD 79 (140)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------------hhCcCcEEEEEeCCeeEEEEEc
Confidence 3333333346666777777777777765443 3346778899988777777765
No 43
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=36.67 E-value=93 Score=28.64 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=26.3
Q ss_pred CccCCCEEEE-cCeEEEEEEEeeEEEEEEEeCCcEEEE
Q 002608 721 PFDVGDRCEV-DGVQMIVEEMNVLTTVFLRYDNLKIIY 757 (900)
Q Consensus 721 PFdVGDrI~I-dGv~G~VeEI~LlsTvfrt~DG~~V~I 757 (900)
-..+||+|.. +|..|+|.+|+=-+.++...+|..+.+
T Consensus 37 ~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 37 SLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred hCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 3689999987 679999999985444555445554443
No 44
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=35.95 E-value=38 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.4
Q ss_pred HHHhHhhcccccccccchHHHHH
Q 002608 612 VKTMSLFEGSKENGRISKSSLKN 634 (900)
Q Consensus 612 ~~af~lFdg~~~nG~Is~~~l~~ 634 (900)
+++|..+|. +.+|.|+.+|+..
T Consensus 2 ~~~F~~~D~-d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDT-DGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTT-TSSSEEEHHHHHH
T ss_pred HHHHHHHcC-CCCCcCCHHHHHH
Confidence 368889986 6899999999975
No 45
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=35.62 E-value=60 Score=28.84 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=35.9
Q ss_pred HHHHHHhhccCCccccHhHHHhhCCH---------HHHHHHhHhhcccc---cccccchHHHHHHH
Q 002608 583 RKIFLNVARYGSKHIYLEDLMRFMQE---------EEAVKTMSLFEGSK---ENGRISKSSLKNWV 636 (900)
Q Consensus 583 rrIF~~v~~~G~~~I~~eDl~~F~~~---------eeA~~af~lFdg~~---~nG~Is~~~l~~~v 636 (900)
+.||.+.+. +..++++++|.+|+.+ +++...+.-|.... ..+.++.+.|.+.+
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 578999986 8999999999999843 44555555554321 24566666665544
No 46
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=32.79 E-value=5.3e+02 Score=28.35 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 002608 389 SAILSYITKILVCLLIGTIVWLV 411 (900)
Q Consensus 389 ~~~l~~v~kvL~~llv~~~l~l~ 411 (900)
..|+.+..+.++++++..+++|+
T Consensus 176 ~Ew~~i~~~~i~~~~l~v~~~l~ 198 (232)
T PF10329_consen 176 REWFAILLRTIIKLVLLVVVILI 198 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888887777666655
No 47
>COG5346 Predicted membrane protein [Function unknown]
Probab=31.88 E-value=2.8e+02 Score=27.67 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 002608 693 SQLVLVAFVFG 703 (900)
Q Consensus 693 s~gLaLgFafq 703 (900)
+..+|++|+++
T Consensus 118 v~alAlaFv~~ 128 (136)
T COG5346 118 VFALALAFVIG 128 (136)
T ss_pred HHHHHHHHHHh
Confidence 34555556554
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=31.82 E-value=59 Score=29.96 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.0
Q ss_pred HHHHHhHhhccccccc-ccchHHHHHHHHH
Q 002608 610 EAVKTMSLFEGSKENG-RISKSSLKNWVVN 638 (900)
Q Consensus 610 eA~~af~lFdg~~~nG-~Is~~~l~~~vv~ 638 (900)
.+.++|..||+.+++| .|++.+|+..+.+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 4568899999656887 5999999986654
No 49
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=30.67 E-value=66 Score=27.29 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=21.2
Q ss_pred CCccCCCEEEEc---CeEEEEEEEeeEEEEEE
Q 002608 720 HPFDVGDRCEVD---GVQMIVEEMNVLTTVFL 748 (900)
Q Consensus 720 hPFdVGDrI~Id---Gv~G~VeEI~LlsTvfr 748 (900)
.+.-|||||.++ +..+.|+++--+.+.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 456899999885 45677888877777664
No 50
>PHA02513 V1 structural protein V1; Reviewed
Probab=30.52 E-value=1.1e+02 Score=29.88 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=24.9
Q ss_pred hhCCHHHHHHHhHhhcccccccccchHHHHHHHHHHHHHhHhhhh
Q 002608 604 RFMQEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALAL 648 (900)
Q Consensus 604 ~F~~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ERk~L~~ 648 (900)
+||.+|+.++|..+|-..| +|.|-++.-+ ++++....-.+.+
T Consensus 20 kyft~eqi~ea~kif~qtw-dgnii~sa~~--fveva~~npkltk 61 (135)
T PHA02513 20 KYFTKEQIAEATKIFYQTW-DGNIISSARR--FVEVAKANPKLTK 61 (135)
T ss_pred hhcCHHHHHHHHHHHHHhc-CchHHHHHHH--HHHHHhcCCcccc
Confidence 4677777777888876544 5677665433 5555444333433
No 51
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=29.24 E-value=1.9e+02 Score=27.59 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=25.9
Q ss_pred ccCCCEEEE-cCeEEEEEEEeeEEEEEEEeCCcEEEE
Q 002608 722 FDVGDRCEV-DGVQMIVEEMNVLTTVFLRYDNLKIIY 757 (900)
Q Consensus 722 FdVGDrI~I-dGv~G~VeEI~LlsTvfrt~DG~~V~I 757 (900)
...||.|.. +|..|+|.+|.=-+.++.-.+|..+.+
T Consensus 44 L~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~ 80 (97)
T COG1862 44 LKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKF 80 (97)
T ss_pred ccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEE
Confidence 589999986 679999999986554444445655554
No 52
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.12 E-value=1.6e+02 Score=37.98 Aligned_cols=36 Identities=17% Similarity=0.456 Sum_probs=21.3
Q ss_pred HHHHHhhhhccCccc----chhhhhHHHHHHHHHHHHHHH
Q 002608 370 LVLITWYNLFDSKVE----RETKSAILSYITKILVCLLIG 405 (900)
Q Consensus 370 ~vli~w~~l~~~~~~----~~~~~~~l~~v~kvL~~llv~ 405 (900)
++++.|.++|++.|. +.|.++++-.|.-+++-+|++
T Consensus 613 aiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLA 652 (1258)
T KOG1053|consen 613 AIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLA 652 (1258)
T ss_pred HHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 345678888987763 335556665555555444444
No 53
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=28.78 E-value=3.2e+02 Score=28.55 Aligned_cols=7 Identities=29% Similarity=0.467 Sum_probs=5.6
Q ss_pred hhcCCcc
Q 002608 717 FVIHPFD 723 (900)
Q Consensus 717 fv~hPFd 723 (900)
-++|||.
T Consensus 189 ~ld~Pf~ 195 (209)
T PF14023_consen 189 DLDNPFS 195 (209)
T ss_pred HhcCCCC
Confidence 5789986
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=28.63 E-value=1.7e+02 Score=28.54 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhccCCccccHhHHHhh-CC--HHHHHHHhHhhcccccccccchHHHHHHH
Q 002608 577 EAKAAARKIFLNVARYGSKHIYLEDLMRF-MQ--EEEAVKTMSLFEGSKENGRISKSSLKNWV 636 (900)
Q Consensus 577 eAkalArrIF~~v~~~G~~~I~~eDl~~F-~~--~eeA~~af~lFdg~~~nG~Is~~~l~~~v 636 (900)
.-+.-+.-.|..+-..+..+|+.++|..+ +. +..+...|..+|. +.+|.||.+++...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~-n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDL-DKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCC-CCCCCCCHHHHHHHH
Confidence 45666788888888888999999999975 32 3457788999985 589999999998655
No 55
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=27.50 E-value=1.2e+02 Score=27.57 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.6
Q ss_pred CccCCCEEEE-----cCeEEEEEEEee
Q 002608 721 PFDVGDRCEV-----DGVQMIVEEMNV 742 (900)
Q Consensus 721 PFdVGDrI~I-----dGv~G~VeEI~L 742 (900)
++..||+|.| -|..|.|.+|..
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~ 32 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLP 32 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999998 368899999864
No 56
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=26.14 E-value=33 Score=38.47 Aligned_cols=6 Identities=67% Similarity=1.232 Sum_probs=4.1
Q ss_pred HHHHhh
Q 002608 321 LVLICG 326 (900)
Q Consensus 321 lvl~~g 326 (900)
||||||
T Consensus 16 CVLWCg 21 (291)
T PTZ00459 16 CVLWCG 21 (291)
T ss_pred HHHhcC
Confidence 567776
No 57
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.95 E-value=63 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=17.7
Q ss_pred ccCCCEEEE--cCeEEEEEEEe
Q 002608 722 FDVGDRCEV--DGVQMIVEEMN 741 (900)
Q Consensus 722 FdVGDrI~I--dGv~G~VeEI~ 741 (900)
|.+||.|.+ +|-.|+|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999999 68999999874
No 58
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.32 E-value=1.9e+02 Score=30.90 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHhhhcCC
Q 002608 686 EFLLFLSSQLVLVAFVF-------GNTCKTIFEALIFLFVIHP 721 (900)
Q Consensus 686 ~lla~~Gs~gLaLgFaf-------q~tikn~f~SgIFLfv~hP 721 (900)
+...++|+.++++|.++ ..+++- +..++|+++..|
T Consensus 41 TKa~TLGv~LILlgv~l~~~~~~~~~slkl-LLiIvFllLTaP 82 (197)
T PRK12585 41 GISNTFGVSLLLFATVGYFFHSGEGFNARV-LLAVLFIFLTTP 82 (197)
T ss_pred ccchhhhHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHH
Confidence 44445555554444221 123344 457788888877
No 59
>PRK14725 pyruvate kinase; Provisional
Probab=25.19 E-value=2.1e+02 Score=35.52 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred CCccCCCEEEEcC--eEEEEEEEe--eEEEEEEE--------eCCcEEEEecccccCCcEEeeecCCC---ceEEEEEEE
Q 002608 720 HPFDVGDRCEVDG--VQMIVEEMN--VLTTVFLR--------YDNLKIIYPNGVLSTKPIHNFYQSPD---MGDAIEFCV 784 (900)
Q Consensus 720 hPFdVGDrI~IdG--v~G~VeEI~--LlsTvfrt--------~DG~~V~IPNS~L~tk~I~N~SRS~~---~~~~I~~~V 784 (900)
+-.++||+|.+|+ ..+.|++++ -..+++.+ ..++-|.+|+..+.-..++-.-+..- ....=-+.+
T Consensus 371 ~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~~vD~Val 450 (608)
T PRK14725 371 RAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVAKHADIVAL 450 (608)
T ss_pred HhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHHHHHHHhCCEEEE
Confidence 3479999999975 778888875 22333332 23345668888764433332222110 000113677
Q ss_pred eeCCCHHHHHHHHHHHHH
Q 002608 785 HITTPSEKIALMRQRIVG 802 (900)
Q Consensus 785 ~~~Td~ekIe~Lke~I~~ 802 (900)
+|-.+.++|..+++.+.+
T Consensus 451 SFVrs~~DV~~lr~~L~~ 468 (608)
T PRK14725 451 SFVRSPEDVRLLLDALEK 468 (608)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 888899999988888765
No 60
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=24.87 E-value=1.4e+02 Score=29.53 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhccCCccccHhHHHhhC-------CHHHHHHHhHhhcccccccccchHHHHHHHHHHHHHh
Q 002608 579 KAAARKIFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRER 643 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ER 643 (900)
..--+.+|..+-..|..+|+.++|..++ .+++....+.-+|. +++|.|...+|...+.+.....
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~ 77 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEK 77 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHhhhccc
Confidence 3445778888888889999988876543 46788899999986 5899999999987666555444
No 61
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=24.56 E-value=1.9e+02 Score=36.71 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHhhhhccCc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002608 361 PVQNCLWLGLVLITWYNLFDSK-VERETKSAILSYITKILVCLLIGTIVWLVKTL 414 (900)
Q Consensus 361 ~v~~~lWl~~vli~w~~l~~~~-~~~~~~~~~l~~v~kvL~~llv~~~l~l~kkl 414 (900)
++..|+|+...+.+|..+-... .........+..+.++++.++++.+.|.+-+.
T Consensus 432 ~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 432 ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888889997532211 11112334567788888999888888877553
No 62
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=23.99 E-value=97 Score=26.52 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHH
Q 002608 397 KILVCLLIGTIVWLVKTLMIKVLASSFHVSTYFDRI 432 (900)
Q Consensus 397 kvL~~llv~~~l~l~kkllvq~iA~sFH~~ty~dRI 432 (900)
|-|..++++++++=.-|-+|+-||..|-.+-|+.+=
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~~ 43 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNKG 43 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhcC
Confidence 457888899999999999999999999999888763
No 63
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=23.25 E-value=93 Score=26.95 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=17.2
Q ss_pred ccCCCEEEE-cCeEEEEEEEe
Q 002608 722 FDVGDRCEV-DGVQMIVEEMN 741 (900)
Q Consensus 722 FdVGDrI~I-dGv~G~VeEI~ 741 (900)
-+|||.|++ +|.+|.|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 479999999 67899998876
No 64
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=23.20 E-value=3.4e+02 Score=24.13 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcccchhHHHHHHHHHHHHHHHHHhhHHHH
Q 002608 656 AVKKLHKLVNVVFAIIILVI-WLLILKIATTEFLLFLSSQLVLVAFVFGNTCKT 708 (900)
Q Consensus 656 aV~~L~~Il~viv~II~iii-~L~ilGi~~t~lla~~Gs~gLaLgFafq~tikn 708 (900)
..+.+-+++.++.++++.+. .+..+-++ ..+|..+++++|..-..+.+
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i~it~F~~n-----~~~g~i~i~I~l~l~G~isE 54 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFINITAFLIN-----QIAGLISIGITLFLAGLISE 54 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444443322 22222222 34445555555555555555
No 65
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=23.05 E-value=1.2e+02 Score=27.57 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=22.7
Q ss_pred HHHHHHhHhhccccccc-ccchHHHHHHHH
Q 002608 609 EEAVKTMSLFEGSKENG-RISKSSLKNWVV 637 (900)
Q Consensus 609 eeA~~af~lFdg~~~nG-~Is~~~l~~~vv 637 (900)
++..++|.+||..+++| .|+..+|+..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~ 38 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHH
Confidence 45678999997336899 599999997664
No 66
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=23.01 E-value=1.3e+02 Score=22.50 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.8
Q ss_pred CCCEEEE-----cCeEEEEEEEe
Q 002608 724 VGDRCEV-----DGVQMIVEEMN 741 (900)
Q Consensus 724 VGDrI~I-----dGv~G~VeEI~ 741 (900)
+||+|.| .|..|.|.+|.
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~ 23 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEID 23 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEE
T ss_pred CCCEEEEeEcCCCCceEEEEEEE
Confidence 6999999 57999999986
No 67
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=22.57 E-value=1.5e+02 Score=30.68 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=40.8
Q ss_pred HHHHhhccCCccccHhHHHhhC-------CHHHHHHHhHhhcccccccccchHHHHHHH
Q 002608 585 IFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNWV 636 (900)
Q Consensus 585 IF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lFdg~~~nG~Is~~~l~~~v 636 (900)
.|+-+-+.+.-+|...+|.+++ +++++++.+..++. +.+|.|+.++++..+
T Consensus 97 aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~-d~dG~i~~~eF~~~~ 154 (160)
T COG5126 97 AFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDE-DGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCC-CCCceEeHHHHHHHH
Confidence 3444566778899999999876 46789999999985 589999999988654
No 68
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.61 E-value=2.2e+02 Score=27.91 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=24.8
Q ss_pred ccCCCEEE-EcCeEEEEEEEeeE-EEEEEEeCCcEEEEec
Q 002608 722 FDVGDRCE-VDGVQMIVEEMNVL-TTVFLRYDNLKIIYPN 759 (900)
Q Consensus 722 FdVGDrI~-IdGv~G~VeEI~Ll-sTvfrt~DG~~V~IPN 759 (900)
.++||+|. ++|..|+|.+|+-= .|+....+|..+.+--
T Consensus 37 Lk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~v~r 76 (113)
T PRK06531 37 IQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLTFEL 76 (113)
T ss_pred cCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEEEEh
Confidence 58999997 58899999999842 1222222565554433
No 69
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.20 E-value=1e+03 Score=32.62 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002608 398 ILVCLLIGTIVWLVKTLMI 416 (900)
Q Consensus 398 vL~~llv~~~l~l~kkllv 416 (900)
+|+|+++.+++++...-++
T Consensus 166 ILLlllLIGLiLlTglSwl 184 (1355)
T PRK10263 166 ALLCVWAAGLTLFTGWSWV 184 (1355)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3344444444444443333
No 70
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.15 E-value=3.1e+02 Score=31.37 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=26.1
Q ss_pred heeehhhhheeeEEEEEeccccchhHHHHHHHHHHHhhhhcc
Q 002608 339 FFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFD 380 (900)
Q Consensus 339 ~~ie~nfllrk~vlyfv~gl~k~v~~~lWl~~vli~w~~l~~ 380 (900)
++.++.|.|-|.. +..+|+.+..++|..+.++.+..+..
T Consensus 109 Gl~~~HF~w~~~~---~~~~r~~l~~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 109 GLAERHFGWPKER---VQRLRRQLRWLIWVLVPLLFISIFAE 147 (340)
T ss_pred CeEeccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777665543 23456777788888888888777665
No 71
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=21.15 E-value=9.2 Score=35.12 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCCCchh
Q 002608 264 GEDLPEE 270 (900)
Q Consensus 264 ~~~~~~~ 270 (900)
|+.+|..
T Consensus 50 ee~m~rK 56 (81)
T PF14812_consen 50 EEPMPRK 56 (81)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4445554
No 72
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=1.3e+02 Score=28.73 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCccCCCEEEEc---------------CeEEEEEEEeeEEEEEEEeCCcE
Q 002608 720 HPFDVGDRCEVD---------------GVQMIVEEMNVLTTVFLRYDNLK 754 (900)
Q Consensus 720 hPFdVGDrI~Id---------------Gv~G~VeEI~LlsTvfrt~DG~~ 754 (900)
.-|++||.|.|+ |..|+|..+.=.+-.+.-.+|.+
T Consensus 31 ~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k 80 (98)
T COG2139 31 QEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNK 80 (98)
T ss_pred hhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCc
Confidence 458999999984 46788888877666665556543
No 73
>PF05038 Cytochrom_B558a: Cytochrome Cytochrome b558 alpha-subunit; InterPro: IPR007732 Flavocytochrome b558 is the catalytic core of the respiratory-burst oxidase, an enzyme complex that catalyzes the NADPH-dependent reduction of O2 into the superoxide anion O2 in phagocytic cells. Flavocytochrome b558 is anchored in the plasma membrane. It is a heterodimer that consists of a large glycoprotein gp91phox (phox forphagocyte oxidase) (beta subunit) and a small protein p22phox (alpha subunit). The other components of the respiratory-burst oxidase are water-soluble proteins of cytosolic origin, namely p67phox, p47phox, p40phox and Rac. Upon cell stimulation, they assemble with the membrane-bound flavocytochrome b558 which becomes activated and generates O2- []. ; GO: 0020037 heme binding; PDB: 1WLP_A.
Probab=20.73 E-value=33 Score=35.79 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhheecccCCceeeehhhHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhheee
Q 002608 286 SLILIVAALLCSLLIHEIKKKSLWDLKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKR 350 (900)
Q Consensus 286 ~~i~~i~~Lv~sl~i~~~~~~~lw~~~lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk~ 350 (900)
.|+++++++|+.. ...+-|.|... .+. ..++|.|+|.--..|||
T Consensus 17 g~il~~Ggiv~~a-----G~f~~w~fgay-------~ia---------aGvfV~LlEYPRgkR~K 60 (186)
T PF05038_consen 17 GLILLTGGIVAVA-----GQFKQWYFGAY-------SIA---------AGVFVCLLEYPRGKRKK 60 (186)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHhCCeeeec-----cccccchhhHH-------HHH---------HhHhheeeecccccccC
Confidence 4777888877633 23344555443 122 24677888876666655
No 74
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=20.66 E-value=97 Score=25.85 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHHhHhhcccccccccchHHHHHHHHHHHH
Q 002608 612 VKTMSLFEGSKENGRISKSSLKNWVVNAFR 641 (900)
Q Consensus 612 ~~af~lFdg~~~nG~Is~~~l~~~vv~i~~ 641 (900)
.++|..||. +.+|.|+.++|+.++.....
T Consensus 3 ~~~F~~~D~-d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 3 KEAFKKFDK-DGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHST-TSSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHcC-CccCCCCHHHHHHHHHHhcc
Confidence 579999996 58999999999988866543
No 75
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=20.42 E-value=85 Score=29.87 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhhee
Q 002608 311 LKLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRK 349 (900)
Q Consensus 311 ~~lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk 349 (900)
+-.|.|+.=+.+++-|-.|.+.++-.++... |.+.+|+
T Consensus 52 ~lfg~~~~PLilvil~s~v~G~Li~~~~~~~-Ri~~lrr 89 (98)
T COG5416 52 YLFGQWELPLILVILGAAVVGALIAMFAGIA-RILQLRR 89 (98)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 3345555444555556667776665555443 5554543
No 76
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=84 Score=27.98 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHhhHHHHHHHHHHHhhhcCCccCCCEEEE-cCeEEEEEEEeeEEE
Q 002608 700 FVFGNTCKTIFEALIFLFVIHPFDVGDRCEV-DGVQMIVEEMNVLTT 745 (900)
Q Consensus 700 Fafq~tikn~f~SgIFLfv~hPFdVGDrI~I-dGv~G~VeEI~LlsT 745 (900)
|.+++..-. +.. ...+.--.|||.|+. ||..|.|+.++=-+.
T Consensus 6 ~~~~~a~~~-~~~---~~~m~~a~vgniief~dgl~g~vek~nensv 48 (81)
T COG4873 6 KYFQKALLC-LKE---RKLMKIAKVGNIIEFKDGLTGVVEKVNENSV 48 (81)
T ss_pred HHHHhhhhh-hce---eeEeeeeeccceEEEcccceeeeeeecCCcE
Confidence 455554443 223 223455689999998 789999999985443
No 77
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=20.36 E-value=9.4e+02 Score=27.26 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhheeehhhhheeeEEEEEeccccchhHHHHHHHHHHHhhhhccCcccchhhhhH
Q 002608 312 KLWKWEVMVLVLICGRLVSGWGIRLIVFFIERNFVLRKRLLYFVYGVKKPVQNCLWLGLVLITWYNLFDSKVERETKSAI 391 (900)
Q Consensus 312 ~lw~W~v~~lvl~~grlVs~w~~~~~v~~ie~nfllrk~vlyfv~gl~k~v~~~lWl~~vli~w~~l~~~~~~~~~~~~~ 391 (900)
-+|-|.=.+|+++-|. -|+..+++. -|-|+..|..=+.=+++..+-.+. ..-..+
T Consensus 132 ~vw~wl~~~ls~lfg~---iwVlPiF~l-------------------SkiV~alWF~DIa~aa~rv~k~~P---~p~p~~ 186 (360)
T KOG3966|consen 132 VVWGWLHPILSLLFGY---IWVLPIFFL-------------------SKIVQALWFSDIAGAAMRVLKLPP---PPVPPF 186 (360)
T ss_pred chHhhhhHHHHHHHHH---HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhcCCC---CCCCCH
Confidence 6788877777776553 366555441 123333333333344444332211 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002608 392 LSYITKILVCLLIGTIVWLVKTLMIKVLASSF 423 (900)
Q Consensus 392 l~~v~kvL~~llv~~~l~l~kkllvq~iA~sF 423 (900)
.+.+.-.|+++++- +++|+.-.+||++-+.+
T Consensus 187 Sk~~Ad~Lfs~l~Q-~lFLiQgMlv~l~Pi~l 217 (360)
T KOG3966|consen 187 SKMLADTLFSALHQ-ILFLIQGMLVQLLPIPL 217 (360)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhcChhh
Confidence 34444455554443 57888999998887654
No 78
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=20.25 E-value=59 Score=27.80 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=9.6
Q ss_pred cCCccCCCEEEEcCeEEE
Q 002608 719 IHPFDVGDRCEVDGVQMI 736 (900)
Q Consensus 719 ~hPFdVGDrI~IdGv~G~ 736 (900)
..||++||||.+-+..|.
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr 20 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGR 20 (54)
T ss_dssp --S--TT-EEEEEETT--
T ss_pred cCCCCCCCEEEEccCCCC
Confidence 469999999999776654
No 79
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.03 E-value=2.8e+02 Score=24.57 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=37.4
Q ss_pred ccCCCEEEEcCeEEEEEEEeeEEEEEEEeCCcEEEEecccccCCcEEeeecCCCceEEEEEEE
Q 002608 722 FDVGDRCEVDGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCV 784 (900)
Q Consensus 722 FdVGDrI~IdGv~G~VeEI~LlsTvfrt~DG~~V~IPNS~L~tk~I~N~SRS~~~~~~I~~~V 784 (900)
+++|+.+ .|.|.+|.=.-..+.-.+|..-++|.+.+....+.+....-...+.+.+.|
T Consensus 12 ~~~G~i~-----~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV 69 (83)
T cd04461 12 LKPGMVV-----HGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKV 69 (83)
T ss_pred CCCCCEE-----EEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEE
Confidence 6778766 477877776555555456777889999998776655444333444444444
Done!