Query 002608
Match_columns 900
No_of_seqs 312 out of 1944
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 15:46:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002608.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1328-1332//hhsearch_pdb/002608hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 1.0 1 1 296.6 27.5 220 653-882 62-282 (286)
2 3udc_A Small-conductance mecha 1.0 1 1 285.6 29.6 222 651-882 59-281 (285)
3 2be4_A Hypothetical protein LO 1.0 1 1 25.9 7.4 67 574-641 142-227 (272)
4 2f33_A Calbindin; EF-hand, Ca2 1.0 1 1 25.3 7.8 67 574-641 141-222 (263)
5 3a4u_B Multiple coagulation fa 1.0 1 1 25.3 3.9 53 581-634 69-140 (143)
6 2pmy_A RAS and EF-hand domain- 1.0 1 1 24.7 5.6 62 577-639 24-90 (91)
7 1eh2_A EPS15; calcium binding, 1.0 1 1 24.5 6.7 66 577-644 12-82 (106)
8 1qv0_A Obelin, OBL; photoprote 1.0 1 1 24.5 6.0 62 579-641 112-180 (195)
9 2kgr_A Intersectin-1; structur 1.0 1 1 24.5 6.8 66 578-644 12-82 (111)
10 1qjt_A EH1, epidermal growth f 1.0 1 1 24.4 5.7 66 581-647 12-82 (99)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=1.00 E-value=1 Score=296.61 Aligned_cols=220 Identities=18% Similarity=0.256 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 34799999999999999998888875503303578999999999999998667878887887754418736898899969
Q 002608 653 TKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEVDG 732 (900)
Q Consensus 653 ~~tiv~~L~~Ii~viv~II~iii~L~ilGi~~tslLa~lGs~~LaLsFafq~tiknvf~SgIFIfv~hPFdVGDrI~Idg 732 (900)
..+....+.+++.+++++++++++|..+|++++++++++|++++++||++|++++|++ ||++|+++|||+|||||+++|
T Consensus 62 ~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~-sGi~i~~~~pf~vGD~I~i~g 140 (286)
T 2vv5_A 62 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGG 140 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHTTCSSCTTCEEESSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCEEEECC
T ss_conf 8579999999999999999999999994998899999999999999999999999998-554977408814799999999
Q ss_pred EEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCC-C
Q ss_conf 279999994289999970891999846423488489300599735999999950799999999999999887207764-4
Q 002608 733 VQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALMRQRIVGYIEGKKEH-W 811 (900)
Q Consensus 733 ~~G~VeeIsLlsTvfrt~DG~~V~IPNSvL~tk~I~N~SRS~~m~~~I~i~Is~~Td~ekIe~Lke~I~~~i~s~~~~-~ 811 (900)
..|+|++|++++|+++++||+.++|||+.+.+++|.|+||++.++..+++.++|++|.++ +++.+.+.+++++.. .
T Consensus 141 ~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~---v~~~l~~~~~~~~~vl~ 217 (286)
T 2vv5_A 141 VAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILK 217 (286)
T ss_dssp CEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHH---HHHHHHHHHHHCTTBCT
T ss_pred EEEEEEEEEEEEEEEEECCCCEEEECHHHHHHCCEEECCCCCCEEEEEEEEECCCCCHHH---HHHHHHHHHHHCCCCCC
T ss_conf 999999998199999947999999324988209559887998589999999768999999---99999999984804006
Q ss_pred CCCCEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 69988999960899634999999981696684459999999999999998888994036850899635899
Q 002608 812 CTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPA 882 (900)
Q Consensus 812 ~p~p~V~v~~I~d~n~l~l~V~i~hk~N~Qn~~~r~~rRs~l~~aI~k~L~elgIey~lPp~~V~i~~~p~ 882 (900)
.|.|.+.+.++++ +++++.+++|++. ..++..+++++.+++++|+++||++|+|++++++.+.+.
T Consensus 218 ~p~p~v~v~~~~~-~~i~~~v~~~~~~-----~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~~~~ 282 (286)
T 2vv5_A 218 DREMTVRLNELGA-SSINFVVRVWSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKE 282 (286)
T ss_dssp TSCEEEEEEEECS-SSEEEEEEEEEET-----TTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEECC--
T ss_pred CCCCEEEEEEECC-CEEEEEEEEEECC-----CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 9998899999559-7499999999854-----158999999999999999987893778866999526776
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=1.00 E-value=1 Score=285.59 Aligned_cols=222 Identities=18% Similarity=0.277 Sum_probs=195.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 44347999999999999999988888755033035789999999999999986678788878877544187368988999
Q 002608 651 NDTKTAVKKLHKLVNVVFAIIILVIWLLILKIATTEFLLFLSSQLVLVAFVFGNTCKTIFEALIFLFVIHPFDVGDRCEV 730 (900)
Q Consensus 651 ~D~~tiv~~L~~Ii~viv~II~iii~L~ilGi~~tslLa~lGs~~LaLsFafq~tiknvf~SgIFIfv~hPFdVGDrI~I 730 (900)
+..+++...+.+++.+++++++++++|..+|++.+++++++|++++++||++|++++|++ ||++|++++||+|||||++
T Consensus 59 ~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~-~Gi~i~~~~pf~vGD~I~i 137 (285)
T 3udc_A 59 RKIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMI-SGFFIIFEDQFSVGDYVTI 137 (285)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHTTSCCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCEEEE
T ss_conf 567799999999999999999999999994877899999999999999999999999999-9999885078328878988
Q ss_pred CCEEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECCCHHHHHHH-HHHHHHHHHCCCC
Q ss_conf 692799999942899999708919998464234884893005997359999999507999999999-9999988720776
Q 002608 731 DGVQMIVEEMNVLTTVFLRYDNLKIIYPNGVLSTKPIHNFYQSPDMGDAIEFCVHITTPSEKIALM-RQRIVGYIEGKKE 809 (900)
Q Consensus 731 dg~~G~VeeIsLlsTvfrt~DG~~V~IPNSvL~tk~I~N~SRS~~m~~~I~i~Is~~Td~ekIe~L-ke~I~~~i~s~~~ 809 (900)
+|..|+|++|++++|++++.||+.++|||+.+ ..+.|++++. ++..+++.++|++|.+++.++ ++.+.+..+.++.
T Consensus 138 ~~~~G~V~~I~l~~T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~ 214 (285)
T 3udc_A 138 NGISGTVEEIGLRVTKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD 214 (285)
T ss_dssp TTEEEEEEEECSSEEEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCEEEEEEEEEEEEEEEECCCCCEEEECCCCC--CCCCCCCCCC-CEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98799999820268898657898798336112--1322257787-33899986413899999999999999998725401
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
Q ss_conf 4469988999960899634999999981696684459999999999999998888994036850899635899
Q 002608 810 HWCTAPMIILKDVEDFTRLRVAVWPCHKMNHQDMGERWTRRALLVEEMVKIFRELDIQYRLFPLDINVRSVPA 882 (900)
Q Consensus 810 ~~~p~p~V~v~~I~d~n~l~l~V~i~hk~N~Qn~~~r~~rRs~l~~aI~k~L~elgIey~lPp~~V~i~~~p~ 882 (900)
...+.+.+.+.+++| +++.+.++++.+. ..+|..+++++.+++++|+++||++|+|+++||+++.++
T Consensus 215 ~~~~~~~v~~~~~~~-s~i~~~v~~~~~~-----~~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~~e 281 (285)
T 3udc_A 215 LIEGPTVLGITDMQD-SKLVIMVYAKTQP-----MQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRVKE 281 (285)
T ss_dssp BSSCCEEEEEEEEET-TEEEEEEEEEEST-----TCHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC--
T ss_pred CCCCCCCCCCCCCCC-CEEEEEEEEEECC-----CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 035754011144589-7799999999775-----317999999999999999987995869977999676887
No 3
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=1.00 E-value=1 Score=25.94 Aligned_cols=67 Identities=10% Similarity=0.231 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC-------------------HHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 9999999999999973015983100768873089-------------------999999857511432233132688999
Q 002608 574 SEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQ-------------------EEEAVKTMSLFEGSKENGRISKSSLKN 634 (900)
Q Consensus 574 S~~eAkalArrIF~~v~~~G~~~I~~eDl~~F~~-------------------~eeA~~af~lfdg~~~ng~Is~~eL~~ 634 (900)
+..+...+.+.+|..+-..|...|..+++..++. .+++..+|..||. +.+|.|+.++|..
T Consensus 142 ~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~-d~~G~Is~~E~~~ 220 (272)
T 2be4_A 142 PPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDV-SRTGALEGPEVDG 220 (272)
T ss_dssp CHHHHHHHHHHHHHHHCSSCSSEEEHHHHGGGSCCSSCSSTTSCCCHHHHHHHHHHHHHHHHHHCT-TCCSEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCEECHHHHHH
T ss_conf 989999999999998436899958699999997211788764300200231109999999988478-9998162999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 002608 635 WVVNAFR 641 (900)
Q Consensus 635 ~vv~iy~ 641 (900)
++...+.
T Consensus 221 ~l~~~~~ 227 (272)
T 2be4_A 221 FVKDMME 227 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999988
No 4
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=1.00 E-value=1 Score=25.33 Aligned_cols=67 Identities=13% Similarity=0.242 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC---------------HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999973015983100768873089---------------9999998575114322331326889999999
Q 002608 574 SEYEAKAAARKIFLNVARYGSKHIYLEDLMRFMQ---------------EEEAVKTMSLFEGSKENGRISKSSLKNWVVN 638 (900)
Q Consensus 574 S~~eAkalArrIF~~v~~~G~~~I~~eDl~~F~~---------------~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~ 638 (900)
+..+.......+|..+-..+...|..+++..++. .+++..+|..||. +.+|.|+.++|+.++..
T Consensus 141 ~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~-d~~G~is~~El~~~l~~ 219 (263)
T 2f33_A 141 DDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQ-DGNGYIDENELDALLKD 219 (263)
T ss_dssp CHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCTTTCSHHHHHHTCCCHHHHHHHHHHHCC-SSSSCEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHH
T ss_conf 87889999999998617799980859999999998888998725752079999999998689-99984569999999999
Q ss_pred HHH
Q ss_conf 999
Q 002608 639 AFR 641 (900)
Q Consensus 639 iy~ 641 (900)
.+.
T Consensus 220 ~~~ 222 (263)
T 2f33_A 220 LCE 222 (263)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
No 5
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=1.00 E-value=1 Score=25.30 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHC---------------CHHHH----HHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99999997301598310076887308---------------99999----99857511432233132688999
Q 002608 581 AARKIFLNVARYGSKHIYLEDLMRFM---------------QEEEA----VKTMSLFEGSKENGRISKSSLKN 634 (900)
Q Consensus 581 lArrIF~~v~~~G~~~I~~eDl~~F~---------------~~eeA----~~af~lfdg~~~ng~Is~~eL~~ 634 (900)
..+.+|..+-..|..+|..++|..++ .++++ ..+|..+|. +.+|.|+.++|..
T Consensus 69 ~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~-d~dG~Is~~EF~~ 140 (143)
T 3a4u_B 69 LQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDK-NNDGYIDYAEFAK 140 (143)
T ss_dssp HHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHHHCT-TCSSEECHHHHHC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEHHHHHH
T ss_conf 99999998589997936899999999999864145567888999999999999998199-9998591999999
No 6
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=24.72 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHC-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999997301598310076887308-----999999985751143223313268899999999
Q 002608 577 EAKAAARKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNA 639 (900)
Q Consensus 577 eAkalArrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~i 639 (900)
+...-.+.+|..+-..|..+|..+++..++ ..+++..+|..+|. +.+|.|+.++|...+.+.
T Consensus 24 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~-d~dg~I~~~EF~~~~~~~ 90 (91)
T 2pmy_A 24 EELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDA-DRDGAITFQEFARGFLGS 90 (91)
T ss_dssp HHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCT-TCSSEECHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCEEHHHHHHHHHHH
T ss_conf 9999999999997899989793999999999909699999999998489-998979499999999987
No 7
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=1.00 E-value=1 Score=24.54 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHC-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999997301598310076887308-----99999998575114322331326889999999999857
Q 002608 577 EAKAAARKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERR 644 (900)
Q Consensus 577 eAkalArrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~iy~ERk 644 (900)
+-+.-.+.+|..+-+ |..+|..+++..++ +++++.+++...|. +.+|.|+.++|...+..++..++
T Consensus 12 ~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~-d~dG~id~~EF~~~m~~~~~~~~ 82 (106)
T 1eh2_A 12 EDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDI-DHDGMLDRDEFAVAMFLVYCALE 82 (106)
T ss_dssp HHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCS-SCSSBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCCEECHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999998589-998696999999999929899999999999768-99993969999999999999985
No 8
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=1.00 E-value=1 Score=24.50 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHC-------CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999997301598310076887308-------99999998575114322331326889999999999
Q 002608 579 KAAARKIFLNVARYGSKHIYLEDLMRFM-------QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFR 641 (900)
Q Consensus 579 kalArrIF~~v~~~G~~~I~~eDl~~F~-------~~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~iy~ 641 (900)
+..++.+|..+-..|..+|..++|..++ .++++..+|..+|. +.+|.|+.++|...+.+.+.
T Consensus 112 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~-d~dg~i~~~eF~~~~~~~~~ 180 (195)
T 1qv0_A 112 REWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDL-DNAGDLDVDEMTRQHLGFWY 180 (195)
T ss_dssp HHHHHHHHHHTC----CEECHHHHHHHHHHHSSCCCHHHHHHHHHHSCC-CTTSCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999999647999838499999999984899989999999998388-99995979999999999836
No 9
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=24.50 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHC-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999997301598310076887308-----99999998575114322331326889999999999857
Q 002608 578 AKAAARKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERR 644 (900)
Q Consensus 578 AkalArrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~iy~ERk 644 (900)
.+.-.+.+|..+-..|..+|..+++..++ ..+++..+|..+|. +.+|.|+.++|...+..++..+.
T Consensus 12 ~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~-d~dG~I~~~EF~~~~~~~~~~~~ 82 (111)
T 2kgr_A 12 SRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDI-DQDGKLTAEEFILAMHLIDVAMS 82 (111)
T ss_dssp HHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCS-SCCSEEEHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999997899999584999999998479999999999999789-99997929999999999999977
No 10
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=1.00 E-value=1 Score=24.43 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHC-----CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997301598310076887308-----99999998575114322331326889999999999857565
Q 002608 581 AARKIFLNVARYGSKHIYLEDLMRFM-----QEEEAVKTMSLFEGSKENGRISKSSLKNWVVNAFRERRALA 647 (900)
Q Consensus 581 lArrIF~~v~~~G~~~I~~eDl~~F~-----~~eeA~~af~lfdg~~~ng~Is~~eL~~~vv~iy~ERk~L~ 647 (900)
-.+.+|..+-..|..+|..+++..++ +++++.+++..+|. +.+|.|+.++|...+..+...+....
T Consensus 12 ~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~-d~dG~i~~~EF~~~~~~~~~~~~g~~ 82 (99)
T 1qjt_A 12 VYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADT-DGKGVLSKQEFFVALRLVACAQNGLE 82 (99)
T ss_dssp HHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCC-SSSSSCCSHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999999987889998398999999999939999999999998778-99983779999999999999985999
Done!