BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002609
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/542 (42%), Positives = 335/542 (61%), Gaps = 22/542 (4%)
Query: 335 PGIPHGSKYRVYFNTPDGP-LERIPAWATYVQPDAD--GKEAFAIHWEPSPEFAYKWRNT 391
P IPH SK + F G ++RIPAW Y DA G +HW+P Y +++
Sbjct: 114 PAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHP 173
Query: 392 RPKVPKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTV 451
RP P + RIYE HVG+SG +P++S++ EF + VLP ++ YN +QL ++EH Y +
Sbjct: 174 RPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASF 233
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFD---GS 508
GY VTN +AVSSR GTP+D K LVD+AH LGL V +D+VHS+++ + GL+ +D +
Sbjct: 234 GYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNT 293
Query: 509 NDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH 568
++ YFHTG RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SM+Y H
Sbjct: 294 HESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHH 353
Query: 569 NGF-ASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQ 627
+G TG+ +EY + D DA++Y++LAN ++H L P +AED + P LC P +
Sbjct: 354 HGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDE 413
Query: 628 GGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSIS 687
GG+GFD+ L ++ + W+ +L+N D +WSMS+IV TL N +Y++K I YAE+H+QSI
Sbjct: 414 GGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLT-NRRYTEKCIAYAESHDQSIV 472
Query: 688 GGRSFAEIL--------FGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGN 739
G ++ A +L ++ SP N RG +L KMI IT +GG YLNFMGN
Sbjct: 473 GDKTIAFLLMDKEMYTGMSDLQPASPTIN----RGIALQKMIHFITMALGGDGYLNFMGN 528
Query: 740 EFGHPKRVEFPMPSNNFSFSLANRHWDLLANR--LHSNLYSFDQELMKLDENAKVLLRGS 797
EFGHP+ ++FP NN+S+ R W L+ + + +FDQ + L+E L
Sbjct: 529 EFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSK 588
Query: 798 PSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQG 857
V +N+ VI + RG LVF+FNFHP +Y+ Y VG + G+Y++ L++D FGG G
Sbjct: 589 QIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHG 648
Query: 858 LI 859
+
Sbjct: 649 RV 650
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 84 ITHKPLAQFLRERHKELKNRKDEIFKRFLN-----------LMEFSTGYEIVGMHRNVEH 132
+ H P+ L + +E K+ + KR+L+ L EFS GY G++ V+
Sbjct: 8 VDHLPIYD-LDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGIN-TVDG 65
Query: 133 RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFI 177
+ +WAP A+ L+G+FN W+ ++ + D +G W I
Sbjct: 66 ATIYREWAPAAQEAQLIGEFNNWNGAKH-----KMEKDKFGIWSI 105
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/542 (42%), Positives = 335/542 (61%), Gaps = 22/542 (4%)
Query: 335 PGIPHGSKYRVYFNTPDGP-LERIPAWATYVQPDAD--GKEAFAIHWEPSPEFAYKWRNT 391
P IPH SK + F G ++RIPAW Y DA G +HW+P Y +++
Sbjct: 114 PAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHP 173
Query: 392 RPKVPKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTV 451
RP P + RIYE HVG+SG +P++S++ EF + VLP ++ YN +QL ++EH Y +
Sbjct: 174 RPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASF 233
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFD---GS 508
GY VTN +AVSSR GTP+D K LVD+AH LGL V +D+VHS+++ + GL+ +D +
Sbjct: 234 GYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNT 293
Query: 509 NDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH 568
++ YFHTG RG+HK W +R+F Y + +VL FLLSNL +W+ E+ DGF+F ++SM+Y H
Sbjct: 294 HESYFHTGDRGYHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHH 353
Query: 569 NGF-ASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQ 627
+G TG+ +EY + D DA++Y++LAN ++H L P +AED + P LC P +
Sbjct: 354 HGINKGFTGNYKEYFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDE 413
Query: 628 GGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSIS 687
GG+GFD+ L ++ + W+ +L+N D +WSMS+IV TL N +Y++K I YAE+H+QSI
Sbjct: 414 GGVGFDFRLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLT-NRRYTEKCIAYAESHDQSIV 472
Query: 688 GGRSFAEIL--------FGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGN 739
G ++ A +L ++ SP N RG +L KMI IT +GG YLNFMGN
Sbjct: 473 GDKTIAFLLMDKEMYTGMSDLQPASPTIN----RGIALQKMIHFITMALGGDGYLNFMGN 528
Query: 740 EFGHPKRVEFPMPSNNFSFSLANRHWDLLANR--LHSNLYSFDQELMKLDENAKVLLRGS 797
EFGHP+ ++FP NN+S+ R W L+ + + +FDQ + L+E L
Sbjct: 529 EFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSK 588
Query: 798 PSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQG 857
V +N+ VI + RG LVF+FNFHP +Y+ Y VG + G+Y++ L++D FGG G
Sbjct: 589 QIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHG 648
Query: 858 LI 859
+
Sbjct: 649 RV 650
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 84 ITHKPLAQFLRERHKELKNRKDEIFKRFLN-----------LMEFSTGYEIVGMHRNVEH 132
+ H P+ L + +E K+ + KR+L+ L EFS GY G++ V+
Sbjct: 8 VDHLPIYD-LDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGIN-TVDG 65
Query: 133 RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFI 177
+ +WAP A+ L+G+FN W+ ++ + D +G W I
Sbjct: 66 ATIYREWAPAAQEAQLIGEFNNWNGAKH-----KMEKDKFGIWSI 105
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 133/491 (27%), Positives = 233/491 (47%), Gaps = 60/491 (12%)
Query: 389 RNTRPKVPKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY 448
R R V +++ YE H+G +P +S + + ++ ++ + G+ ++L V EH
Sbjct: 236 RALRNPVNEAMSTYEVHLG--SWRPGLS-YRQLARELTDYIVDQGFTHVELLPVAEHPFA 292
Query: 449 FTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGS 508
+ GY+VT+ YA +SR+GTPDDF+ LVD H G+ V +D V ++ D L +FDG+
Sbjct: 293 GSWGYQVTSYYAPTSRFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAWA-LGRFDGT 351
Query: 509 NDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH 568
KRG WGT +F + +V +FL++N +W+ E+ IDG + +++SM+Y
Sbjct: 352 PLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLD 411
Query: 569 NGFASLTGDLEEYCNQYVDK-DALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQ 627
++ G + + +A+ +L N H + P I+TIAE++T + G+ PT
Sbjct: 412 --YSRPEGGWTPNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNI 469
Query: 628 GGLGFDYFLNLSASEMWLSFLENTP------DHEWSMSKIVSTLVGNGQYSDKMIMYAEN 681
GGLGF N+ L ++ P HE + S + + +S+ ++ +
Sbjct: 470 GGLGFSMKWNMGWMHDTLDYVSRDPVYRSYHHHEMTFSMLYA-------FSENYVL-PLS 521
Query: 682 HNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEF 741
H++ + G + L+G + P N+ ++ L ++ G L FMG EF
Sbjct: 522 HDEVVHGKGT----LWGRM----PGNNH--VKAAGLRSLLAYQWAHPGKQ--LLFMGQEF 569
Query: 742 GHPKRVE---------FPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKV 792
G +R E F + N FS + D+ +++Y L LD +
Sbjct: 570 G--QRAEWSEQRGLDWFQLDENGFSNGIQRLVRDI------NDIYRCHPALWSLDTTPE- 620
Query: 793 LLRGSPSVHHVNDAKMVICYMR-----GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILN 847
G + + A V+ +MR L +FNF + + DY +G+ AG ++ +LN
Sbjct: 621 ---GYSWIDANDSANNVLSFMRYGSDGSVLACVFNFAGAE-HRDYRLGLPRAGRWREVLN 676
Query: 848 TDESKFGGQGL 858
TD + + G G+
Sbjct: 677 TDATIYHGSGI 687
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 121 YEIVGMH-------RNVEHRVDFMDWAPGARYCALVGDFNGWSPTENCAR 163
+E++G H V V F WAP A+ +L+G+FNGW+ E R
Sbjct: 118 WEVLGAHPRSFTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMR 167
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 125/477 (26%), Positives = 225/477 (47%), Gaps = 51/477 (10%)
Query: 399 LRIYECHVGISGSKPKIS---SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRV 455
+ IYE H+G + S+ E ++++P+ K G+ ++L + EH + GY+
Sbjct: 132 ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQP 191
Query: 456 TNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHT 515
T LYA + R+GT DDF+ +D AH GL V LD V + D L++FDG+N Y H+
Sbjct: 192 TGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFA-LAEFDGTN-LYEHS 249
Query: 516 GKR-GFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASL 574
R G+H+ W T ++ Y +V +FL+ N +W+ + ID + +++SMIY ++
Sbjct: 250 DPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIY--RDYSRK 307
Query: 575 TGDLEEYCNQYVDK---DALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLG 631
G E N++ + +A+ +L N IL +T+AE++T +PG+ P GGLG
Sbjct: 308 EG--EWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLG 365
Query: 632 FDYFLNLSASEMWLSFLENTPDH-EWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGR 690
F Y NL L +++ P + ++ K+ ++ N Y++ ++ +H++ + G +
Sbjct: 366 FWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYN--YTENFVL-PLSHDEVVHGKK 422
Query: 691 SFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAY----LNFMGNEFGHPKR 746
S + + G+ + K L + A+ L FMGNEF +
Sbjct: 423 SILDRMPGD----------------AWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGRE 466
Query: 747 VEFPMPSNNFSFSLANRHWDLLANRLHSNL---YSFDQELMKLDENAKVLLRGSPSVHHV 803
S ++ +W RL +L Y + + +LD + G +
Sbjct: 467 WNHD-ASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY----GFEWLVVD 521
Query: 804 NDAKMVICYMR-----GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG 855
+ + V+ ++R ++ NF P + DY G+ + G+++ ILNTD + G
Sbjct: 522 DKERSVLIFVRRDKEGNEIIVASNFTPVPRH-DYRFGINQPGKWREILNTDSMHYHG 577
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 121 YEIVGMHRNVEHRVD---FMDWAPGARYCALVGDFNGWSPTENCAR 163
YE +G H + V F WAP AR ++VG FN W + R
Sbjct: 11 YETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMR 56
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVT 456
+ L IYE HVG + +F K L ++K+ G I++ + + GY
Sbjct: 100 EDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155
Query: 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA--ADQMVGLSQFDGSNDCYFH 514
LYAV + YG P+ F++LVDEAH GL V LD+V+++ + MV L YF
Sbjct: 156 YLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGP-------YF- 207
Query: 515 TGKRGFHKYWGTRMFKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + WG F +DD +V F+L N+ +W+ EY +DGF+ ++ ++I T
Sbjct: 208 --SQKYKTPWGL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAIIDT 260
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 31/250 (12%)
Query: 321 ETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGPLERIPAWATYVQPDADGKEAFAIHWEP 380
E + W G+ G++Y F DG + +P A+ Q ++ + +P
Sbjct: 66 EMQANGDGWFTLDVAGVTPGTEYN--FVLSDGMV--VPDPASRAQKTDVNGPSYVV--DP 119
Query: 381 SPEFAYKWRNTRPKVPK--SLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQ 438
+Y WRNT K + +YE H G + +F K LP++ E G VI+
Sbjct: 120 G---SYTWRNTGWKGSRWEQAVVYEMHTGTFTPE---GTFRAAIAK-LPYLAELGVTVIE 172
Query: 439 LFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQ 498
+ V + GY LYA S YGTPDDFK +D AHG GL V LDIV
Sbjct: 173 VMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIV-------- 224
Query: 499 MVGLSQFDGSNDCYFHTGKRGFHKY----WGTRMFKYDDLDVLHFLLSNLNWWVVEYQID 554
L+ F + FHK WG + YD V +++ +W+ EY +D
Sbjct: 225 ---LNHFGPEGNYLPLLAPAFFHKERMTPWGNGI-AYDVDAVRRYIIEAPLYWLTEYHLD 280
Query: 555 GFQFHSLSSM 564
G +F ++ +
Sbjct: 281 GLRFDAIDQI 290
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVT 456
+ L IYE HVG + +F K L ++K+ G I++ + + GY
Sbjct: 100 EDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155
Query: 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA--ADQMVGLSQFDGSNDCYFH 514
LYAV + YG P+ F++LVDEAH GL V LD+V+++ + MV L YF
Sbjct: 156 YLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGP-------YF- 207
Query: 515 TGKRGFHKYWGTRMFKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + WG F +DD +V F+L N+ +W+ EY +DGF+ ++ ++I T
Sbjct: 208 --SQKYKTPWGL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVT 456
+ L IYE HVG + +F K L ++K+ G I++ + + GY
Sbjct: 100 EDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155
Query: 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA--ADQMVGLSQFDGSNDCYFH 514
LYAV + YG P+ F++LVDEAH GL V LD+V+++ + MV L YF
Sbjct: 156 YLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGP-------YF- 207
Query: 515 TGKRGFHKYWGTRMFKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + WG F +DD +V F+L N+ +W+ EY +DGF+ ++ ++I T
Sbjct: 208 --SQKYKTPWGL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIIDT 260
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVT 456
+ L IYE HVG + +F K L ++K+ G I++ + + GY
Sbjct: 100 EDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155
Query: 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA--ADQMVGLSQFDGSNDCYFH 514
LYAV + YG P+ F++LVDEAH GL V LD+V+++ + MV L YF
Sbjct: 156 YLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGP-------YF- 207
Query: 515 TGKRGFHKYWGTRMFKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + WG F +DD +V F+L N+ +W+ EY +DGF+ ++ ++I T
Sbjct: 208 --SQKYKTPWGL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVT 456
+ L IYE HVG + +F K L ++K+ G I++ + + GY
Sbjct: 100 EDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEIMPIAQFPGKRDWGYDGV 155
Query: 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA--ADQMVGLSQFDGSNDCYFH 514
LYAV + YG P+ F++LVDEAH GL V LD+V+++ + MV L YF
Sbjct: 156 YLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLG-------PYF- 207
Query: 515 TGKRGFHKYWGTRMFKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + WG F +DD +V F+L N+ +W+ EY +DGF+ ++ ++I T
Sbjct: 208 --SQKYKTPWGL-TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 401 IYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYA 460
YE HVG + ++ EK LP++KE G IQ+ + GY YA
Sbjct: 129 FYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYA 184
Query: 461 VSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGF 520
+ YG P+D LVD AH LGL VFLD+V+++ LS + S YF F
Sbjct: 185 PYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNY-LSSYAPS---YF---TDRF 237
Query: 521 HKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEE 580
WG + Y + + ++ N W+ +Y DG + + M S T L E
Sbjct: 238 SSAWGMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYMTDD-----SETHILTE 291
Query: 581 YCNQYVDKDALLYLILANEILHALHPNIITI 611
Q + + +L+LA + H P+++T+
Sbjct: 292 LA-QEIHELGGTHLLLAED--HRNLPDLVTV 319
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
Query: 401 IYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYA 460
YE HVG + ++ EK LP++KE G IQ+ + GY YA
Sbjct: 129 FYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYA 184
Query: 461 VSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGF 520
+ YG P+D LVD AH LGL VFLD+V+++ LS + S YF F
Sbjct: 185 PYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSGNY-LSSYAPS---YF---TDRF 237
Query: 521 HKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQF 558
WG + Y + ++ N W+ +Y DG +
Sbjct: 238 SSAWGXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRL 274
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 43/214 (20%)
Query: 394 KVP-KSLRIYECHV------------GISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLF 440
KVP K IYE HV I G+ ++S E+++ ++K+ G ++L
Sbjct: 168 KVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLAS-----EQMISYLKDLGITTVELM 222
Query: 441 GVVEHKDYFTV---------GYRVTNLYAVSSRY-------GTPDDFKRLVDEAHGLGLL 484
V D + GY N ++ RY G FK++V+E H G+
Sbjct: 223 PVFHFIDQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIE 282
Query: 485 VFLDIVHSYSAADQMVGLS-QFDGSNDCYFHT----GKRGFHKYWGT-RMFKYDDLDVLH 538
V +D+V++++A +G + F G ++ ++ KR + + GT V+
Sbjct: 283 VIIDVVYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQ 342
Query: 539 FLLSNLNWWVVEYQIDGFQFH---SLSSMIYTHN 569
+L +L +WV E +DGF+F +L+ +Y+ N
Sbjct: 343 MVLDSLRYWVTEMHVDGFRFDLAAALARELYSVN 376
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 423 EKVLPHVKEAGYNVIQLF-----GVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDE 477
EK L +K G N + L GV K Y + + Y + GT DFK+ V
Sbjct: 28 EKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYEIDLLIGTKGDFKKFVKR 87
Query: 478 AHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVL 537
AH L + V +D+V +++A D ++ + R + F Y + ++
Sbjct: 88 AHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDENGNPTRKVPDWSDVVDFDYSNGELR 147
Query: 538 HFLLSNLNWWVVEYQIDGFQ 557
++++ + +WV E+ +DGF+
Sbjct: 148 EYMINMMRYWVEEFDVDGFR 167
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 104/262 (39%), Gaps = 79/262 (30%)
Query: 401 IYECHVGISGSKPKIS--------SFNEFTEKVLPHVKEAGYNVIQLFGVVEH------- 445
IYE HV S P I+ +F F EK L ++K+ G IQL V+ +
Sbjct: 155 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 213
Query: 446 -----KDY------FTVGYRVTNLYAVSSRYGT----PD----DFKRLVDEAHGLGLLVF 486
DY + GY N ++++ Y + P+ +FK L++E H G+
Sbjct: 214 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 273
Query: 487 LDIVHSYSAADQMVG--------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLH 538
LD+V++++A + DG+ F G+ G + R+
Sbjct: 274 LDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRL---------- 323
Query: 539 FLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILAN 598
L+ ++ + V Y++DGF+F M+ H+ +EE A
Sbjct: 324 -LIDSIKYLVDTYKVDGFRF----DMMGDHDA-----ASIEE----------------AY 357
Query: 599 EILHALHPNIITIAEDATYYPG 620
+ AL+PN+I + E Y G
Sbjct: 358 KAARALNPNLIMLGEGWRTYAG 379
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 79/262 (30%)
Query: 401 IYECHVGISGSKPKIS--------SFNEFTEKVLPHVKEAGYNVIQLFGVVEH------- 445
IYE HV S P I+ +F F EK L ++K+ G IQL V+ +
Sbjct: 461 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 519
Query: 446 -----KDY------FTVGYRVTNLYAVSSRYGT----PD----DFKRLVDEAHGLGLLVF 486
DY + GY N ++++ Y + P+ +FK L++E H G+
Sbjct: 520 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 579
Query: 487 LDIVHSYSAADQMVG--------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLH 538
LD+V++++A + DG+ F G+ G + R+
Sbjct: 580 LDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRL---------- 629
Query: 539 FLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILAN 598
L+ ++ + V Y++DGF+F M+ H+ + +EE A
Sbjct: 630 -LIDSIKYLVDTYKVDGFRF----DMMGDHDAAS-----IEE----------------AY 663
Query: 599 EILHALHPNIITIAEDATYYPG 620
+ AL+PN+I + E Y G
Sbjct: 664 KAARALNPNLIMLGEGWRTYAG 685
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 104/262 (39%), Gaps = 79/262 (30%)
Query: 401 IYECHVGISGSKPKIS--------SFNEFTEKVLPHVKEAGYNVIQLFGVVEH------- 445
IYE HV S P I+ +F F EK L ++K+ G IQL V+ +
Sbjct: 154 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 212
Query: 446 -----KDY------FTVGYRVTNLYAVSSRYGT----PD----DFKRLVDEAHGLGLLVF 486
DY + GY N ++++ Y + P+ +FK L++E H G+
Sbjct: 213 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 272
Query: 487 LDIVHSYSAADQMVG--------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLH 538
LD+V++++A + DG+ F G+ G + R+
Sbjct: 273 LDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRL---------- 322
Query: 539 FLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILAN 598
L+ ++ + V Y++DGF+F M+ H+ +EE A
Sbjct: 323 -LIDSIKYLVDTYKVDGFRF----DMMGDHDA-----ASIEE----------------AY 356
Query: 599 EILHALHPNIITIAEDATYYPG 620
+ AL+PN+I + E Y G
Sbjct: 357 KAARALNPNLIMLGEGWRTYAG 378
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 426 LPHVKEAGYNVIQLF-----GVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHG 480
L +K+ G +++ L G V K Y + + ++ YGT DFK L D AH
Sbjct: 36 LQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHE 95
Query: 481 LGLLVFLDIVHSYSAADQMVG 501
LG+ V LDIV+++++ D ++
Sbjct: 96 LGMKVMLDIVYNHTSPDSVLA 116
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 27/209 (12%)
Query: 386 YKWRN-TRPKVP-KSLRIYECHV-GISGSKPKISSFNEFTEKVLPH------VKEAGYNV 436
Y W + P+ P S IYE HV G++ P+I T K L H +K+ G
Sbjct: 136 YDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITA 195
Query: 437 IQLFGVVEHKDYFTV---------GYRVTNLYAVSSRYGTP-----DDFKRLVDEAHGLG 482
++L V + + GY ++A+ Y D+F+ + H G
Sbjct: 196 LELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAG 255
Query: 483 LLVFLDIVHSYSAADQMVG-LSQFDG-SNDCYFHTGKRG-FHKYWGT-RMFKYDDLDVLH 538
+ V LDIV ++SA + G L G N Y+ + G +H + G V+
Sbjct: 256 IEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVD 315
Query: 539 FLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567
+ + L +WV +DGF+F + M T
Sbjct: 316 YASACLRYWVETCHVDGFRFDLAAVMGRT 344
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 30/143 (20%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL----SQFDG 507
GY +++ YA+ +GT DDF L+ +AH GL V LD+V ++++ + + S+ +
Sbjct: 62 GYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNP 121
Query: 508 SNDCY-FHTGKRG-----FHKYWGTRMFKYDD------LDVLHFLLSNLNW--------- 546
D Y + GK G + +G ++YD+ L + +LNW
Sbjct: 122 KRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQAL 181
Query: 547 -----WVVEYQIDGFQFHSLSSM 564
W ++ IDGF+ ++S +
Sbjct: 182 YEMVNWWLDKGIDGFRIDAISHI 204
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 106/281 (37%), Gaps = 66/281 (23%)
Query: 393 PKVPKSLRIYECHV------GISG--SKPKISSFNEFTEKVLPHVK-------EAGYNVI 437
P P IYE HV SG +K K +F E K HVK E G +
Sbjct: 427 PANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTV 486
Query: 438 QLFGVVE-------HKDYFTVGYRVTNLYAVSSRYGTP-------DDFKRLVDEAHGLGL 483
QL V E D + GY N Y T + K+L+ H +
Sbjct: 487 QLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRI 546
Query: 484 LVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGT---RMFKYDDLDVLHFL 540
V +D+V++++ D MV S FD Y++ + G+ F + F+
Sbjct: 547 GVNMDVVYNHTF-DVMV--SDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKFV 603
Query: 541 LSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEI 600
L ++N+WV EY +DGF+F ++ + KD + ++NE
Sbjct: 604 LDSVNYWVNEYHVDGFRFDLMA----------------------LLGKDTMAK--ISNE- 638
Query: 601 LHALHPNIITIAEDAT------YYPGLCEPTTQGGLGFDYF 635
LHA++P I+ E T L Q GLG F
Sbjct: 639 LHAINPGIVLYGEPWTGGTSGLSSDQLVTKGQQKGLGIGVF 679
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 407 GISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYG 466
GI K I + + + + G N I L + + Y GY VT+ Y ++ YG
Sbjct: 22 GIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYH--GYDVTDYYKINPDYG 79
Query: 467 TPDDFKRLVDEAHGLGLLVFLDI 489
T +DF +LV+ AH G+ V +D+
Sbjct: 80 TLEDFHKLVEAAHQRGIKVIIDL 102
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY VT+ V+ + GT DF RLV EAH G+ ++LD V +++
Sbjct: 90 GYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVXNHTG 133
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY VT+ V+ + GT DF RLV EAH G+ ++LD V +++
Sbjct: 90 GYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTG 133
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVG-----YRVTNLYAVSSRYGTP--------DDF 471
+LP VK G + I L V D F G Y V N + RY P ++F
Sbjct: 125 LLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEF 184
Query: 472 KRLVDEAHGLGLLVFLDIVHSYSAAD 497
K V+ H LG+ V LD + +A D
Sbjct: 185 KAFVEACHILGIRVILDFIPRTAARD 210
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 84/257 (32%)
Query: 401 IYECHV-------GISGS-KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTV- 451
IYE HV + G K ++ +F F+EK L ++++ G IQL V+ YF V
Sbjct: 270 IYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEK-LDYLQKLGVTHIQLLPVLS---YFYVN 325
Query: 452 -------------------GYRVTNLYAVSSRYG-TPDD-------FKRLVDEAHGLGLL 484
GY + +A+S Y P D K+L+ + H G+
Sbjct: 326 EMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMG 385
Query: 485 VFLDIVHSYSAADQMVG--------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDV 536
V LD+V++++A + DGS F G+ G R+
Sbjct: 386 VILDVVYNHTAKTYLFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRV-------- 437
Query: 537 LHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLIL 596
L+ ++ + E+++DGF+F M+ H+ A + L
Sbjct: 438 ---LVDSIKYLTSEFKVDGFRF----DMMGDHDAAA---------------------IEL 469
Query: 597 ANEILHALHPNIITIAE 613
A + A++PN+I I E
Sbjct: 470 AYKEAKAINPNMIMIGE 486
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 426 LPHVKEAGYNVI-------QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEA 478
L +++ G+ I QL + D +T GY T++Y+++ YGT DD K L
Sbjct: 49 LDYIQGMGFTAIWITPVTAQLPQDCAYGDAYT-GYWQTDIYSLNENYGTADDLKALSSAL 107
Query: 479 HGLGLLVFLDIVHS---YSAADQMVGLSQFDG-SNDCYFH--------TGKRGFHKYW-G 525
H G+ + +D+V + Y A V S F S+ YFH + W G
Sbjct: 108 HERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLG 167
Query: 526 TRMFKYDDLDVLHFLLSNLNWW------VVEYQIDGFQFHSL 561
DLD ++ N W+ V Y IDG + ++
Sbjct: 168 DNTVSLPDLDTTKDVVKN-EWYDWVGSLVSNYSIDGLRIDTV 208
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 426 LPHVKEAGYNVI---QLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLG 482
LP+++E G + +F H Y T Y A+ ++G F+RLVDEAH G
Sbjct: 179 LPYLEELGVTALYFTPIFASPSHHKYDTADY-----LAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 483 LLVFLDIVHSYSAADQMVGL 502
+ + LD V ++ A DQ
Sbjct: 234 IKIILDAVFNH-AGDQFFAF 252
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTV------GYRVTNLYAVSSRYGTPDDFKRLVDEAH 479
L +++ G+ I + + E T GY +Y V+S +GT D+ K L D H
Sbjct: 49 LDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108
Query: 480 GLGLLVFLDIV---HSYSAADQMVGLSQFDG-SNDCYFH--------TGKRGFHKYW-GT 526
G+ + +D+V Y+ V S FD + YFH W G
Sbjct: 109 ARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTMVEDCWEGD 168
Query: 527 RMFKYDDLDVLHFLLSNLNW--WVVE----YQIDGFQFHSL 561
+ DLD + + W WV + Y +DG + S+
Sbjct: 169 TIVSLPDLDTTETAVRTI-WYDWVADLVSNYSVDGLRIDSV 208
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTV------GYRVTNLYAVSSRYGTPDDFKRLVDEAH 479
L +++ G+ I + V T GY ++Y+++ YGT DD K L H
Sbjct: 49 LDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALH 108
Query: 480 GLGLLVFLDIVHS---YSAADQMVGLSQFDG-SNDCYFH--------TGKRGFHKYW-GT 526
G+ + +D+V + Y A V S F S+ YFH + W G
Sbjct: 109 ERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGD 168
Query: 527 RMFKYDDLDVLHFLLSNLNWW------VVEYQIDGFQFHSL 561
DLD ++ N W+ V Y IDG + ++
Sbjct: 169 NTVSLPDLDTTKDVVKN-EWYDWVGSLVSNYSIDGLRIDTV 208
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 426 LPHVKEAGYNVIQLF------GVVEHK--DYFTVGYRVTNLYAVSSRYGT-PDD------ 470
L +VKE G ++L GV E K D + GY + +A Y + P D
Sbjct: 257 LAYVKELGVTHVELLPVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKT 316
Query: 471 -FKRLVDEAHGLGLLVFLDIV--HSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTR 527
K++++ H GL V LD+V H Y + S F+ + YF GT
Sbjct: 317 ELKQMINTLHQHGLRVILDVVFNHVYKREN-----SPFEKTVPGYFFRHDECGKPSNGTG 371
Query: 528 M---FKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561
+ + F+ + +W+ EY +DGF+F L
Sbjct: 372 VGNDIASERRMARKFIADCVVYWLEEYNVDGFRFDLL 408
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL 484
+ ++KE G + + L V + GY V + Y+ + YG+ +FK +++ H G+
Sbjct: 28 AVSYLKELGIDFVWLMPVFSSISFH--GYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIK 85
Query: 485 VFLDI 489
V LD+
Sbjct: 86 VVLDL 90
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493
GY T+ Y + RYG+ +DF RL EA G+ + D+V S+
Sbjct: 182 GYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493
GY T+ Y + RYG+ +DF RL EA G+ + D+V S+
Sbjct: 182 GYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG + K L+ HG G+ DIV ++ AD +
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY----- 105
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493
GY T+ Y + RYG+ +DF RL EA G+ + D+V S+
Sbjct: 182 GYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSH 223
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG + K L+ HG G+ DIV ++ AD +
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY----- 105
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG + K L+ HG G+ DIV ++ AD +
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY----- 105
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG + K L+ HG G+ DIV ++ AD +
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY----- 105
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG + K L+ HG G+ DIV ++ AD +
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIY----- 105
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAAD--QMVGLSQFDGS 508
GY LY + +S+YG + K L+ HG G+ DIV ++ AD G++
Sbjct: 51 GYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIA----- 105
Query: 509 NDCYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 106 --CIFEGGTSDGRLDWGPHMICRDD 128
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 452 GYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND 510
GY LY + +S+YG K L+ HG G+ DIV ++ A+ G +
Sbjct: 50 GYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIY----- 104
Query: 511 CYFHTGKRGFHKYWGTRMFKYDD 533
C F G WG M DD
Sbjct: 105 CIFEGGTPDARLDWGPHMICRDD 127
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493
GY T+ Y + RYG+ +DF RL EA G + D+V S+
Sbjct: 182 GYAATDHYRIDPRYGSNEDFVRLSTEARKRGXGLIQDVVLSH 223
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485
L ++KE G +VI L V E + GY +++ + + +GT +D+ L+ E H + +
Sbjct: 37 LDYLKELGIDVIWLSPVYESPNDDN-GYDISDYCKIMNEFGTMEDWDELLHEMHERNMKL 95
Query: 486 FLDIVHSYSA 495
+D+V ++++
Sbjct: 96 MMDLVVNHTS 105
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 63 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 63 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 63 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 105
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 90 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 133
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 105
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY +++ V YGT +DF RL+ E G+ + +D+V ++S+
Sbjct: 62 GYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSS 105
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485
L ++KE G + I + + +GY + N V YGT +D L+++ H LG+
Sbjct: 46 LEYIKELGADAIWISPFYDSPQD-DMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKF 104
Query: 486 FLDIVHSYSAAD 497
D+V ++ +++
Sbjct: 105 ITDLVINHCSSE 116
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485
L ++KE G + I + + +GY + N V YGT +D L+++ H LG+
Sbjct: 46 LEYIKELGADAIWISPFYDSPQD-DMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKF 104
Query: 486 FLDIVHSYSAAD 497
D+V ++ +++
Sbjct: 105 ITDLVINHCSSE 116
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485
L + E G + L V++ + T GY V + ++ G +++ RL+DEA GL +
Sbjct: 21 LDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGI 80
Query: 486 FLDIVHSYSAA 496
DIV ++ A
Sbjct: 81 IQDIVPNHMAV 91
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 465 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
+GT DF+RLVD AH G+ V +D ++++
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTS 138
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQM 499
GY V + ++ G +++RL++ AH +GL + DIV ++ A + +
Sbjct: 49 GYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSL 96
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 451 VGYRVTNLY---------AVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490
VGY V +LY AV ++YGT + + + AH G+ V+ D+V
Sbjct: 55 VGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVV 103
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 828 SYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSR 887
SY+DY + + +A E + +N ++ G+G+ H+ + IS R I++P +R
Sbjct: 125 SYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITR 184
Query: 888 TA 889
A
Sbjct: 185 VA 186
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 828 SYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSR 887
SY+DY + + +A E + +N ++ G+G+ H+ + IS R I++P +R
Sbjct: 100 SYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITR 159
Query: 888 TA 889
A
Sbjct: 160 VA 161
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 434 YNVIQLFGV--VEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV- 490
Y+VI GV + Y+ ++ TN YGT DFK L+D AH + V +D
Sbjct: 84 YSVINYSGVNNTAYHGYWARDFKKTN-----PAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 491 -HSYSAADQMVGLSQ----FDGSN--DCYFHTGKRGFHKYWGTR-------MFK--YDDL 534
H+ A+ ++ +D N Y + + FH Y GT ++K YD
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLA 198
Query: 535 DVLH-------FLLSNLNWWVVEYQIDGFQFHSLSSM 564
D+ H +L + W ++ +DG + ++ +M
Sbjct: 199 DLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVDAVKNM 234
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 32/157 (20%)
Query: 434 YNVIQLFGV--VEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV- 490
Y+VI GV + Y+ ++ TN YGT DFK L+D AH + V +D
Sbjct: 84 YSVINYSGVNNTAYHGYWARDFKKTN-----PAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 491 -HSYSAADQMVGLSQ----FDGSN--DCYFHTGKRGFHKYWGTRMFK---------YDDL 534
H+ A+ ++ +D N Y + + FH Y GT + YD
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDLSTIENGIYKNLYDLA 198
Query: 535 DVLH-------FLLSNLNWWVVEYQIDGFQFHSLSSM 564
D+ H +L + W ++ +DG + ++ M
Sbjct: 199 DLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVDAVKHM 234
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY + + + YGT +DF RL+ E + + +D+V ++++
Sbjct: 62 GYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMRLMIDVVINHTS 105
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 447 DYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQM 499
DYF +G V +R+G+ ++ RL+ AH G+ V D+V ++ A +
Sbjct: 66 DYFDLG-EYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDL 117
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495
GY ++N + YGT +DF LV E + + +D+V ++++
Sbjct: 76 GYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTS 119
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 434 YNVIQLFGV--VEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV- 490
Y+VI GV + Y+ ++ TN YGT DFK L+D AH + V +D
Sbjct: 84 YSVINYSGVNNTAYHGYWARDFKKTN-----PAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 491 -HSYSAADQMVGLSQ----FDGSN--DCYFHTGKRGFHKYWGT 526
H+ A+ ++ +D N Y + + FH Y GT
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGT 181
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 434 YNVIQLFGV--VEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV- 490
Y+VI GV + Y+ ++ TN YGT DFK L+D AH + V +D
Sbjct: 84 YSVINYSGVNNTAYHGYWARDFKKTN-----PAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 491 -HSYSAADQMVGLSQ----FDGSN--DCYFHTGKRGFHKYWGT 526
H+ A+ ++ +D N Y + + FH Y GT
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGT 181
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 434 YNVIQLFGV--VEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV- 490
Y+VI GV + Y+ ++ TN YGT DFK L+D AH + V +D
Sbjct: 84 YSVINYSGVNNTAYHGYWARDFKKTN-----PAYGTMQDFKNLIDTAHAHNIKVIIDFAP 138
Query: 491 -HSYSAADQMVGLSQ----FDGSN--DCYFHTGKRGFHKYWGT 526
H+ A+ ++ +D N Y + + FH Y GT
Sbjct: 139 NHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGT 181
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 424 KVLPHVKEAGYNVIQL---FGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHG 480
K + H+++ G I L F + Y T+ Y+ + Y GT +DF++LV H
Sbjct: 269 KHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYL-----GTMEDFEKLVQVLHS 323
Query: 481 LGLLVFLDI-VHSYSAADQMVGLSQFDGSNDCYF 513
+ + LDI +H + +++ + +G N Y+
Sbjct: 324 RKIKIVLDITMHHTNPCNELFVKALREGENSPYW 357
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 465 YGTPDDFKRLVDEAHGLGLLVFLDIV--HSYSAADQMVGLSQ----FDGSN--DCYFHTG 516
YGT DFK L+D AH + V +D H+ A+ ++ +D N Y +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 517 KRGFHKYWGT 526
+ FH Y GT
Sbjct: 172 QNLFHHYGGT 181
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 452 GYRVTNLYAVSSRY-------GTPDDFKRLVDEAHGLGLLVFLDIVHSYSAAD------- 497
GY N ++ RY G +F+ +V H G+ V++D+V++++A
Sbjct: 249 GYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSD 308
Query: 498 -QMVGLSQFDGSNDCYFH---TGKRGFHKYWGTRM-FKYDDLDVLHFLLSNLNWWVVEYQ 552
+ + G ++ ++ +G + F+ G F + + ++ +L +W
Sbjct: 309 PTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMG 368
Query: 553 IDGFQFHSLSSMI 565
+DGF+F L+S++
Sbjct: 369 VDGFRFD-LASVL 380
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 452 GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND- 510
GY V + AV GT DD L G G+ + LD+V ++ A + G
Sbjct: 144 GYAVQDYRAVRPDLGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKY 203
Query: 511 -CYFH 514
YFH
Sbjct: 204 RAYFH 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,633,462
Number of Sequences: 62578
Number of extensions: 1452308
Number of successful extensions: 3160
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3049
Number of HSP's gapped (non-prelim): 97
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)