Query 002609
Match_columns 900
No_of_seqs 552 out of 3456
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03244 alpha-amylase; Provis 100.0 2E-204 3E-209 1753.7 64.8 865 1-900 1-872 (872)
2 PLN02960 alpha-amylase 100.0 2E-199 3E-204 1745.6 69.2 892 1-900 1-897 (897)
3 PLN02447 1,4-alpha-glucan-bran 100.0 2E-137 5E-142 1220.8 68.6 661 79-896 62-732 (758)
4 KOG0470 1,4-alpha-glucan branc 100.0 1E-120 2E-125 1041.5 45.2 719 1-896 1-754 (757)
5 PRK05402 glycogen branching en 100.0 2.7E-99 6E-104 917.0 63.4 680 116-896 13-725 (726)
6 PRK14706 glycogen branching en 100.0 1.2E-97 3E-102 883.7 54.8 578 118-896 21-623 (639)
7 PRK14705 glycogen branching en 100.0 4.6E-96 1E-100 903.5 55.4 577 117-895 616-1223(1224)
8 PRK12568 glycogen branching en 100.0 5.7E-95 1.2E-99 858.4 59.5 673 117-895 23-729 (730)
9 PRK12313 glycogen branching en 100.0 3.4E-92 7.4E-97 845.5 57.1 583 119-899 22-632 (633)
10 TIGR01515 branching_enzym alph 100.0 6.8E-90 1.5E-94 821.0 52.7 519 334-893 71-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 1.2E-90 2.7E-95 804.4 38.7 578 118-893 20-627 (628)
12 TIGR02102 pullulan_Gpos pullul 100.0 2.9E-77 6.2E-82 733.4 55.0 616 204-896 258-1006(1111)
13 TIGR02100 glgX_debranch glycog 100.0 5.9E-76 1.3E-80 704.2 54.8 546 282-894 6-688 (688)
14 TIGR02104 pulA_typeI pullulana 100.0 4.4E-75 9.5E-80 694.0 47.0 520 279-851 8-601 (605)
15 PRK03705 glycogen debranching 100.0 9.4E-74 2E-78 680.6 51.7 539 279-894 6-657 (658)
16 TIGR02402 trehalose_TreZ malto 100.0 1.4E-73 3E-78 671.0 46.2 468 292-826 1-537 (542)
17 PLN02877 alpha-amylase/limit d 100.0 1.3E-72 2.8E-77 678.6 48.5 555 278-895 210-969 (970)
18 TIGR02103 pullul_strch alpha-1 100.0 2.2E-72 4.7E-77 679.1 46.7 553 282-895 127-897 (898)
19 COG1523 PulA Type II secretory 100.0 3.7E-68 8.1E-73 626.3 41.4 554 279-897 14-694 (697)
20 PRK14510 putative bifunctional 100.0 1.8E-65 3.8E-70 643.7 47.9 475 278-797 9-576 (1221)
21 PRK10785 maltodextrin glucosid 100.0 8.6E-54 1.9E-58 509.7 41.1 464 287-825 16-560 (598)
22 TIGR02456 treS_nterm trehalose 100.0 1.8E-52 3.8E-57 494.3 37.6 446 397-894 4-538 (539)
23 TIGR02403 trehalose_treC alpha 100.0 6.4E-51 1.4E-55 480.5 37.8 442 397-893 3-542 (543)
24 PRK10933 trehalose-6-phosphate 100.0 1.7E-50 3.6E-55 476.6 38.9 447 394-895 6-551 (551)
25 PRK09505 malS alpha-amylase; R 100.0 6.5E-47 1.4E-51 450.7 31.4 365 397-824 188-682 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 6.9E-46 1.5E-50 432.8 33.5 376 416-893 19-479 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 4.4E-43 9.6E-48 382.9 18.9 281 416-746 1-313 (316)
28 PLN00196 alpha-amylase; Provis 100.0 1.1E-37 2.4E-42 355.9 32.4 339 415-849 40-420 (428)
29 PLN02361 alpha-amylase 100.0 1.2E-36 2.7E-41 343.7 29.7 336 417-849 27-394 (401)
30 PRK13840 sucrose phosphorylase 100.0 1.7E-33 3.6E-38 323.5 29.2 375 416-826 17-469 (495)
31 COG0366 AmyA Glycosidases [Car 100.0 1.7E-33 3.6E-38 329.8 27.2 389 399-826 1-486 (505)
32 TIGR03852 sucrose_gtfA sucrose 100.0 3E-33 6.4E-38 319.6 22.7 373 412-826 13-463 (470)
33 TIGR02455 TreS_stutzeri trehal 100.0 2.2E-31 4.7E-36 306.7 33.5 452 398-896 51-683 (688)
34 PLN02784 alpha-amylase 100.0 1.2E-31 2.6E-36 317.7 29.9 188 399-618 499-703 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 4.6E-30 9.9E-35 302.1 25.7 165 397-564 16-218 (545)
36 TIGR02401 trehalose_TreY malto 100.0 2.8E-26 6E-31 275.0 31.3 81 416-497 13-93 (825)
37 PRK14511 maltooligosyl trehalo 99.9 2E-21 4.2E-26 234.4 30.8 82 416-498 17-98 (879)
38 smart00642 Aamy Alpha-amylase 99.8 2.3E-21 4.9E-26 195.7 9.8 84 412-496 12-97 (166)
39 KOG2212 Alpha-amylase [Carbohy 99.8 2.9E-19 6.3E-24 190.1 24.5 374 417-851 38-466 (504)
40 cd02854 Glycogen_branching_enz 99.7 1.1E-17 2.3E-22 154.5 10.8 47 130-181 3-49 (99)
41 PF14872 GHL5: Hypothetical gl 99.7 2.5E-15 5.3E-20 171.3 27.5 303 282-619 27-438 (811)
42 PRK14507 putative bifunctional 99.6 9.4E-16 2E-20 195.6 9.5 91 399-496 744-834 (1693)
43 cd02860 Pullulanase_N_term Pul 99.4 9.8E-13 2.1E-17 121.9 9.9 84 283-367 1-87 (100)
44 cd02856 Glycogen_debranching_e 99.4 2.2E-12 4.8E-17 120.2 10.7 82 282-366 1-92 (103)
45 TIGR01531 glyc_debranch glycog 99.3 4.2E-12 9.2E-17 158.1 7.5 85 415-501 128-217 (1464)
46 COG3280 TreY Maltooligosyl tre 99.3 3.7E-12 8E-17 148.1 6.5 80 417-497 17-96 (889)
47 cd02852 Isoamylase_N_term Isoa 99.3 1.7E-11 3.8E-16 117.1 10.1 83 284-367 1-97 (119)
48 PF02922 CBM_48: Carbohydrate- 99.2 6.4E-12 1.4E-16 112.5 5.3 72 124-206 2-75 (85)
49 PF02922 CBM_48: Carbohydrate- 99.2 2.6E-11 5.6E-16 108.6 7.4 78 282-361 1-85 (85)
50 cd02855 Glycogen_branching_enz 99.2 7.8E-11 1.7E-15 109.7 9.9 60 117-181 3-66 (106)
51 PF02806 Alpha-amylase_C: Alph 99.2 4.6E-11 1E-15 109.4 7.8 89 799-895 1-94 (95)
52 PRK12568 glycogen branching en 99.1 6.4E-11 1.4E-15 142.7 6.9 72 118-203 121-195 (730)
53 cd02853 MTHase_N_term Maltooli 99.0 8.7E-10 1.9E-14 99.1 9.7 71 285-366 2-74 (85)
54 cd02861 E_set_proteins_like E 98.9 1.6E-09 3.4E-14 96.8 5.6 54 133-202 3-56 (82)
55 PRK05402 glycogen branching en 98.9 2.6E-09 5.7E-14 131.3 7.4 75 116-204 112-190 (726)
56 cd02858 Esterase_N_term Estera 98.8 5E-09 1.1E-13 94.3 5.2 58 130-202 4-61 (85)
57 PF11941 DUF3459: Domain of un 98.6 1.4E-07 3E-12 85.2 7.9 83 779-892 1-89 (89)
58 PF02638 DUF187: Glycosyl hydr 98.4 3.7E-06 8.1E-11 93.6 15.9 189 417-612 17-227 (311)
59 cd02860 Pullulanase_N_term Pul 98.4 3.4E-07 7.4E-12 84.8 6.0 65 124-204 1-69 (100)
60 PF14701 hDGE_amylase: glucano 98.4 4.7E-07 1E-11 103.0 7.9 83 416-500 19-108 (423)
61 cd02856 Glycogen_debranching_e 98.4 4.7E-07 1E-11 84.4 5.7 64 124-203 2-66 (103)
62 cd02859 AMPKbeta_GBD_like AMP- 98.3 1.2E-06 2.6E-11 77.8 5.1 53 133-202 3-55 (79)
63 cd02853 MTHase_N_term Maltooli 98.2 2E-06 4.4E-11 77.3 6.3 59 125-202 1-59 (85)
64 cd02858 Esterase_N_term Estera 98.2 5.8E-06 1.3E-10 74.4 8.9 69 290-366 6-75 (85)
65 PF14871 GHL6: Hypothetical gl 98.2 1.1E-05 2.5E-10 78.6 11.0 121 423-559 3-131 (132)
66 cd02688 E_set E or "early" set 98.0 8.4E-06 1.8E-10 71.6 6.1 60 132-205 4-63 (83)
67 PRK14508 4-alpha-glucanotransf 98.0 0.00022 4.8E-09 84.2 19.2 46 413-460 20-66 (497)
68 cd02852 Isoamylase_N_term Isoa 98.0 9.4E-06 2E-10 77.7 6.5 63 125-203 1-70 (119)
69 PF02324 Glyco_hydro_70: Glyco 97.8 3.5E-05 7.5E-10 90.5 7.9 97 398-495 564-673 (809)
70 COG1649 Uncharacterized protei 97.8 0.00025 5.4E-09 81.0 14.5 178 419-612 64-270 (418)
71 TIGR02104 pulA_typeI pullulana 97.8 2.5E-05 5.4E-10 94.7 6.5 66 123-204 11-80 (605)
72 cd02688 E_set E or "early" set 97.7 0.00013 2.8E-09 64.0 8.1 59 290-352 4-64 (83)
73 PLN02635 disproportionating en 97.6 0.00072 1.6E-08 80.2 14.9 54 404-457 34-90 (538)
74 PF02446 Glyco_hydro_77: 4-alp 97.6 0.00022 4.8E-09 84.5 10.2 51 414-465 13-64 (496)
75 PRK14705 glycogen branching en 97.5 0.00031 6.7E-09 89.9 10.9 55 117-181 516-570 (1224)
76 PF02065 Melibiase: Melibiase; 97.5 0.0017 3.6E-08 74.7 14.7 134 420-564 59-195 (394)
77 TIGR02103 pullul_strch alpha-1 97.5 0.00018 3.8E-09 89.7 6.9 65 123-202 127-193 (898)
78 PRK14510 putative bifunctional 97.3 0.013 2.7E-07 76.5 21.4 88 469-563 932-1031(1221)
79 TIGR02102 pullulan_Gpos pullul 97.3 0.00039 8.4E-09 88.4 7.0 83 123-216 318-404 (1111)
80 PF11852 DUF3372: Domain of un 97.1 0.0008 1.7E-08 67.9 6.4 104 774-895 41-167 (168)
81 cd02861 E_set_proteins_like E 97.1 0.0028 6.1E-08 56.5 8.7 69 292-370 4-75 (82)
82 PRK03705 glycogen debranching 97.1 0.00072 1.6E-08 82.5 6.2 66 121-202 9-75 (658)
83 KOG3625 Alpha amylase [Carbohy 97.1 0.00058 1.2E-08 82.0 5.0 84 416-501 139-229 (1521)
84 PLN02950 4-alpha-glucanotransf 97.0 0.052 1.1E-06 68.7 22.2 60 414-474 278-341 (909)
85 PF02324 Glyco_hydro_70: Glyco 97.0 0.022 4.7E-07 67.8 16.8 231 527-814 144-422 (809)
86 cd06594 GH31_glucosidase_YihQ 96.9 0.0033 7.2E-08 70.5 9.7 136 417-562 21-166 (317)
87 cd06592 GH31_glucosidase_KIAA1 96.9 0.0049 1.1E-07 68.7 10.4 128 417-562 28-165 (303)
88 TIGR02100 glgX_debranch glycog 96.8 0.0016 3.6E-08 79.9 6.7 66 122-203 5-73 (688)
89 PF13199 Glyco_hydro_66: Glyco 96.8 0.019 4.1E-07 68.6 14.6 174 418-619 117-313 (559)
90 cd06597 GH31_transferase_CtsY 96.8 0.0027 5.8E-08 71.9 7.2 92 470-562 86-187 (340)
91 TIGR02402 trehalose_TreZ malto 96.7 0.0014 2.9E-08 78.7 4.6 50 134-202 1-50 (542)
92 cd06593 GH31_xylosidase_YicI Y 96.6 0.0087 1.9E-07 66.7 9.9 130 417-563 22-160 (308)
93 cd02854 Glycogen_branching_enz 96.4 0.0058 1.3E-07 56.8 5.6 87 289-378 4-99 (99)
94 PF13200 DUF4015: Putative gly 96.4 0.056 1.2E-06 60.4 14.0 165 421-605 14-187 (316)
95 TIGR00217 malQ 4-alpha-glucano 96.3 0.047 1E-06 65.1 13.9 35 412-446 28-62 (513)
96 PLN02877 alpha-amylase/limit d 96.2 0.0063 1.4E-07 76.3 6.5 63 123-202 214-280 (970)
97 cd06591 GH31_xylosidase_XylS X 96.2 0.0085 1.9E-07 67.2 6.6 129 418-562 23-159 (319)
98 cd06600 GH31_MGAM-like This fa 95.9 0.011 2.5E-07 66.2 5.8 130 417-561 22-159 (317)
99 smart00632 Aamy_C Aamy_C domai 95.9 0.047 1E-06 48.7 8.5 71 805-893 6-78 (81)
100 cd02855 Glycogen_branching_enz 95.6 0.022 4.7E-07 52.8 5.5 86 279-368 6-99 (106)
101 cd06599 GH31_glycosidase_Aec37 95.6 0.022 4.8E-07 63.8 6.6 125 424-561 33-167 (317)
102 PF00150 Cellulase: Cellulase 95.5 0.21 4.6E-06 53.9 13.8 143 421-614 22-172 (281)
103 PRK14582 pgaB outer membrane N 95.5 0.14 3E-06 62.7 13.2 132 419-562 334-468 (671)
104 PF01055 Glyco_hydro_31: Glyco 95.4 0.026 5.6E-07 66.1 6.4 130 419-562 43-180 (441)
105 cd06602 GH31_MGAM_SI_GAA This 95.1 0.039 8.4E-07 62.5 6.5 132 419-562 24-165 (339)
106 PRK10426 alpha-glucosidase; Pr 94.9 0.11 2.5E-06 63.5 10.2 132 420-562 222-363 (635)
107 cd06604 GH31_glucosidase_II_Ma 94.8 0.075 1.6E-06 60.2 7.8 129 417-562 22-159 (339)
108 PRK11052 malQ 4-alpha-glucanot 94.7 0.18 3.9E-06 62.2 11.2 135 469-619 355-504 (695)
109 PLN02447 1,4-alpha-glucan-bran 94.7 0.058 1.2E-06 66.6 7.0 57 280-340 104-161 (758)
110 cd06598 GH31_transferase_CtsZ 94.7 0.24 5.2E-06 55.6 11.4 129 418-561 23-163 (317)
111 cd05808 CBM20_alpha_amylase Al 94.4 0.041 8.9E-07 50.2 3.8 46 143-201 14-63 (95)
112 PF00686 CBM_20: Starch bindin 94.1 0.035 7.6E-07 51.0 2.7 67 140-233 12-86 (96)
113 TIGR01370 cysRS possible cyste 93.9 0.35 7.5E-06 54.2 10.5 84 520-613 128-212 (315)
114 TIGR01531 glyc_debranch glycog 93.7 2.4 5.2E-05 55.5 18.5 71 521-618 470-546 (1464)
115 PRK10658 putative alpha-glucos 93.5 0.1 2.2E-06 64.2 5.8 122 425-562 288-418 (665)
116 cd06595 GH31_xylosidase_XylS-l 93.1 0.18 3.8E-06 56.0 6.5 128 417-560 23-157 (292)
117 cd06542 GH18_EndoS-like Endo-b 93.0 0.29 6.3E-06 52.9 7.8 64 467-560 49-112 (255)
118 cd05809 CBM20_beta_amylase Bet 92.8 0.17 3.7E-06 46.8 5.0 58 134-201 5-68 (99)
119 TIGR01515 branching_enzym alph 92.4 0.18 3.9E-06 61.7 5.8 32 278-309 12-47 (613)
120 PRK14507 putative bifunctional 92.4 0.56 1.2E-05 62.6 10.5 135 469-619 386-535 (1693)
121 COG1640 MalQ 4-alpha-glucanotr 92.0 2.4 5.1E-05 50.5 14.0 87 469-564 210-308 (520)
122 cd06564 GH20_DspB_LnbB-like Gl 91.6 2.6 5.7E-05 47.5 13.7 159 422-614 19-202 (326)
123 COG1501 Alpha-glucosidases, fa 91.5 0.3 6.6E-06 60.9 6.4 87 471-562 323-415 (772)
124 PF05913 DUF871: Bacterial pro 91.2 0.2 4.4E-06 57.0 4.2 57 417-491 12-69 (357)
125 cd06601 GH31_lyase_GLase GLase 90.2 0.68 1.5E-05 52.4 7.2 101 425-561 29-132 (332)
126 cd06603 GH31_GANC_GANAB_alpha 90.1 0.39 8.4E-06 54.4 5.2 129 417-561 22-161 (339)
127 PF14488 DUF4434: Domain of un 89.8 0.92 2E-05 46.2 7.1 64 425-492 25-88 (166)
128 PRK12313 glycogen branching en 89.4 0.5 1.1E-05 58.1 5.8 49 278-329 22-76 (633)
129 PF07745 Glyco_hydro_53: Glyco 89.3 1.1 2.4E-05 50.6 7.9 149 420-612 24-174 (332)
130 cd05814 CBM20_Prei4 Prei4, N-t 89.3 0.57 1.2E-05 45.0 4.9 57 134-203 3-68 (120)
131 cd02875 GH18_chitobiase Chitob 89.1 1.8 4E-05 49.5 9.7 84 472-607 67-151 (358)
132 PRK14706 glycogen branching en 88.7 0.49 1.1E-05 58.1 5.0 50 278-329 22-76 (639)
133 PLN02763 hydrolase, hydrolyzin 88.2 0.87 1.9E-05 57.9 6.7 126 419-561 201-335 (978)
134 cd06562 GH20_HexA_HexB-like Be 87.0 4.5 9.7E-05 46.1 11.1 120 423-552 21-149 (348)
135 PF02449 Glyco_hydro_42: Beta- 86.8 2 4.2E-05 49.4 8.2 117 423-560 13-136 (374)
136 PF14883 GHL13: Hypothetical g 86.2 24 0.00051 39.1 15.3 164 419-610 16-189 (294)
137 PF08533 Glyco_hydro_42C: Beta 85.6 2.2 4.8E-05 35.4 5.7 47 815-894 12-58 (58)
138 KOG1065 Maltase glucoamylase a 85.5 3.6 7.7E-05 51.0 9.7 130 416-560 308-446 (805)
139 COG3589 Uncharacterized conser 85.4 1.2 2.5E-05 49.7 5.0 51 426-492 22-72 (360)
140 PF10438 Cyc-maltodext_C: Cycl 85.0 2.5 5.3E-05 37.7 6.0 68 805-894 7-78 (78)
141 cd06589 GH31 The enzymes of gl 84.3 1.6 3.5E-05 47.7 5.6 92 416-562 21-116 (265)
142 PF01120 Alpha_L_fucos: Alpha- 84.0 7.8 0.00017 44.1 11.1 149 423-612 94-243 (346)
143 COG3867 Arabinogalactan endo-1 83.3 14 0.00031 40.7 11.9 61 420-492 63-127 (403)
144 cd05467 CBM20 The family 20 ca 83.2 1.5 3.3E-05 39.8 4.1 66 140-232 10-82 (96)
145 cd06545 GH18_3CO4_chitinase Th 82.8 3.5 7.6E-05 44.6 7.5 63 468-560 45-107 (253)
146 cd05817 CBM20_DSP Dual-specifi 82.4 1.9 4.1E-05 39.9 4.5 45 144-201 14-62 (100)
147 cd06565 GH20_GcnA-like Glycosy 82.1 20 0.00042 40.1 13.1 111 423-552 20-131 (301)
148 cd05813 CBM20_genethonin_1 Gen 81.7 3.6 7.8E-05 37.6 6.0 54 134-201 3-62 (95)
149 smart00812 Alpha_L_fucos Alpha 81.2 26 0.00057 40.6 14.1 116 423-561 84-202 (384)
150 cd02871 GH18_chitinase_D-like 80.9 5.2 0.00011 44.8 8.1 61 467-560 58-118 (312)
151 cd06568 GH20_SpHex_like A subg 80.7 15 0.00032 41.6 11.7 161 423-613 21-196 (329)
152 cd05816 CBM20_DPE2_repeat2 Dis 80.2 3.6 7.7E-05 38.0 5.4 56 134-201 2-64 (99)
153 cd06570 GH20_chitobiase-like_1 79.2 13 0.00027 41.9 10.4 119 422-551 20-146 (311)
154 cd05811 CBM20_glucoamylase Glu 78.1 2.5 5.4E-05 39.4 3.8 50 143-201 20-73 (106)
155 PF03198 Glyco_hydro_72: Gluca 77.3 3.3 7.2E-05 46.1 5.0 47 423-492 56-102 (314)
156 COG0296 GlgB 1,4-alpha-glucan 77.2 2.8 6.1E-05 51.0 4.8 32 279-310 22-56 (628)
157 cd05810 CBM20_alpha_MTH Glucan 77.2 2.8 6E-05 38.7 3.7 65 144-233 16-85 (97)
158 cd06543 GH18_PF-ChiA-like PF-C 77.1 46 0.001 37.1 14.0 93 427-560 19-112 (294)
159 cd02742 GH20_hexosaminidase Be 76.4 8.6 0.00019 42.9 8.1 158 424-614 20-193 (303)
160 cd05818 CBM20_water_dikinase P 76.4 3.4 7.3E-05 37.7 4.0 43 144-201 16-61 (92)
161 cd06547 GH85_ENGase Endo-beta- 74.0 6.8 0.00015 44.5 6.5 95 473-611 50-145 (339)
162 cd05820 CBM20_novamyl Novamyl 73.8 3.6 7.9E-05 38.3 3.6 45 144-201 19-70 (103)
163 cd06563 GH20_chitobiase-like T 71.6 31 0.00067 39.5 11.2 79 467-551 84-164 (357)
164 TIGR03849 arch_ComA phosphosul 70.5 8.1 0.00018 41.6 5.7 46 424-489 75-120 (237)
165 cd02874 GH18_CFLE_spore_hydrol 69.9 11 0.00025 41.9 7.1 65 471-560 47-111 (313)
166 PF01301 Glyco_hydro_35: Glyco 68.5 5.3 0.00011 45.0 4.1 56 424-490 28-84 (319)
167 COG3280 TreY Maltooligosyl tre 67.8 5.7 0.00012 48.6 4.3 98 722-823 712-826 (889)
168 PF00728 Glyco_hydro_20: Glyco 67.1 7.9 0.00017 43.7 5.2 121 424-552 22-156 (351)
169 PLN03236 4-alpha-glucanotransf 66.7 8 0.00017 48.2 5.4 59 413-472 77-139 (745)
170 TIGR03356 BGL beta-galactosida 65.0 30 0.00066 40.6 9.6 94 416-552 51-150 (427)
171 cd06546 GH18_CTS3_chitinase GH 64.0 26 0.00057 38.2 8.2 66 465-560 55-120 (256)
172 PF02679 ComA: (2R)-phospho-3- 63.3 14 0.00031 39.9 5.9 48 423-490 87-134 (244)
173 PF13204 DUF4038: Protein of u 63.2 13 0.00029 41.2 5.9 65 425-493 35-110 (289)
174 KOG3625 Alpha amylase [Carbohy 63.1 19 0.0004 45.2 7.3 72 521-619 492-569 (1521)
175 cd00598 GH18_chitinase-like Th 62.9 49 0.0011 34.1 9.8 64 467-560 47-112 (210)
176 PLN02950 4-alpha-glucanotransf 62.1 16 0.00034 47.0 6.9 88 469-562 461-557 (909)
177 PF09260 DUF1966: Domain of un 62.1 19 0.00042 33.0 5.7 71 807-898 6-85 (91)
178 COG2342 Predicted extracellula 61.6 63 0.0014 35.6 10.2 154 426-612 36-191 (300)
179 COG1523 PulA Type II secretory 60.9 17 0.00037 45.2 6.6 78 290-368 67-155 (697)
180 PTZ00445 p36-lilke protein; Pr 59.3 19 0.00042 38.1 5.8 65 417-487 26-96 (219)
181 PLN03059 beta-galactosidase; P 58.1 15 0.00033 46.2 5.7 55 425-489 64-118 (840)
182 cd05815 CBM20_DPE2_repeat1 Dis 57.8 11 0.00024 34.7 3.5 49 144-202 14-66 (101)
183 PF14701 hDGE_amylase: glucano 56.6 22 0.00048 41.5 6.3 60 521-607 357-422 (423)
184 PLN03236 4-alpha-glucanotransf 56.2 22 0.00049 44.4 6.6 85 469-562 274-370 (745)
185 COG2730 BglC Endoglucanase [Ca 55.7 18 0.00039 42.2 5.5 59 422-490 75-137 (407)
186 PRK11052 malQ 4-alpha-glucanot 52.8 21 0.00046 44.5 5.7 64 412-476 158-224 (695)
187 PRK15452 putative protease; Pr 52.6 1.1E+02 0.0024 36.2 11.3 49 426-488 16-65 (443)
188 cd06569 GH20_Sm-chitobiase-lik 52.5 34 0.00074 40.4 7.2 83 467-549 95-191 (445)
189 cd05807 CBM20_CGTase CGTase, C 50.0 15 0.00032 34.0 2.9 48 144-201 18-70 (101)
190 PF00724 Oxidored_FMN: NADH:fl 50.0 1E+02 0.0022 35.0 10.3 28 468-497 79-106 (341)
191 PRK01060 endonuclease IV; Prov 49.5 37 0.0008 36.9 6.5 52 419-485 12-63 (281)
192 PF03644 Glyco_hydro_85: Glyco 48.5 38 0.00082 38.1 6.4 96 473-612 46-141 (311)
193 cd02859 AMPKbeta_GBD_like AMP- 48.5 75 0.0016 28.1 7.1 60 292-362 4-65 (79)
194 KOG0496 Beta-galactosidase [Ca 46.7 31 0.00067 42.1 5.5 63 423-495 52-114 (649)
195 PF13380 CoA_binding_2: CoA bi 46.6 26 0.00056 33.4 4.1 41 421-487 67-107 (116)
196 PF10566 Glyco_hydro_97: Glyco 43.7 2.4E+02 0.0051 31.3 11.4 61 417-490 30-94 (273)
197 cd02877 GH18_hevamine_XipI_cla 42.1 3.8E+02 0.0082 29.7 12.9 59 428-489 19-79 (280)
198 PRK05628 coproporphyrinogen II 38.8 39 0.00085 38.8 4.8 65 422-496 107-172 (375)
199 KOG0470 1,4-alpha-glucan branc 38.3 45 0.00096 41.3 5.1 32 280-311 102-134 (757)
200 cd02857 CD_pullulan_degrading_ 37.5 1.5E+02 0.0031 27.5 7.7 60 290-349 16-81 (116)
201 KOG1616 Protein involved in Sn 37.4 33 0.00072 38.2 3.7 58 132-202 79-136 (289)
202 TIGR00539 hemN_rel putative ox 34.9 58 0.0013 37.2 5.3 63 424-496 101-164 (360)
203 PRK09856 fructoselysine 3-epim 34.1 77 0.0017 34.3 5.9 48 424-486 17-64 (275)
204 PRK13210 putative L-xylulose 5 33.8 66 0.0014 34.9 5.4 50 425-487 21-70 (284)
205 PF01212 Beta_elim_lyase: Beta 33.4 35 0.00075 38.0 3.1 24 467-490 143-166 (290)
206 PRK15447 putative protease; Pr 32.6 97 0.0021 34.6 6.5 54 416-489 15-68 (301)
207 cd02872 GH18_chitolectin_chito 32.5 90 0.002 35.5 6.4 29 532-560 92-120 (362)
208 smart00636 Glyco_18 Glycosyl h 31.2 1.3E+02 0.0027 33.8 7.2 29 532-560 87-115 (334)
209 cd02932 OYE_YqiM_FMN Old yello 31.2 7.1E+02 0.015 28.1 13.3 68 422-496 32-102 (336)
210 cd02876 GH18_SI-CLP Stabilin-1 31.0 1.1E+02 0.0024 34.2 6.7 28 532-559 88-115 (318)
211 cd04824 eu_ALAD_PBGS_cysteine_ 31.0 5.8E+02 0.013 28.8 11.8 106 417-556 49-158 (320)
212 KOG0256 1-aminocyclopropane-1- 30.8 48 0.0011 38.4 3.6 60 419-496 211-273 (471)
213 PRK08446 coproporphyrinogen II 30.1 80 0.0017 36.0 5.4 62 424-495 99-161 (350)
214 PRK08207 coproporphyrinogen II 29.8 78 0.0017 37.9 5.4 62 422-493 268-330 (488)
215 cd02929 TMADH_HD_FMN Trimethyl 29.3 7.9E+02 0.017 28.3 13.4 28 468-497 82-109 (370)
216 PRK10076 pyruvate formate lyas 28.8 1.3E+02 0.0029 31.8 6.4 61 422-487 147-211 (213)
217 PRK13384 delta-aminolevulinic 27.7 2.3E+02 0.005 32.0 8.1 105 417-556 59-164 (322)
218 PRK08208 coproporphyrinogen II 27.7 79 0.0017 37.1 4.9 65 422-496 140-205 (430)
219 cd08560 GDPD_EcGlpQ_like_1 Gly 27.3 1.6E+02 0.0036 33.8 7.2 69 471-562 280-348 (356)
220 cd06549 GH18_trifunctional GH1 27.0 1.1E+02 0.0025 33.9 5.8 54 531-604 83-137 (298)
221 COG0520 csdA Selenocysteine ly 26.8 53 0.0012 38.3 3.2 35 457-491 167-201 (405)
222 PRK04302 triosephosphate isome 26.5 1.2E+02 0.0025 32.3 5.5 44 426-489 78-121 (223)
223 PRK05904 coproporphyrinogen II 26.4 76 0.0016 36.3 4.4 61 424-494 104-165 (353)
224 TIGR00433 bioB biotin syntheta 26.0 94 0.002 34.1 4.9 60 423-493 123-182 (296)
225 TIGR01210 conserved hypothetic 25.6 1.1E+02 0.0023 34.5 5.2 60 423-492 117-178 (313)
226 cd00287 ribokinase_pfkB_like r 25.6 1.2E+02 0.0025 30.6 5.2 52 425-491 42-93 (196)
227 cd02931 ER_like_FMN Enoate red 25.0 7.8E+02 0.017 28.5 12.3 23 468-490 82-104 (382)
228 KOG0259 Tyrosine aminotransfer 24.9 74 0.0016 36.6 3.7 32 467-498 217-248 (447)
229 PF07071 DUF1341: Protein of u 24.7 1.2E+02 0.0027 31.9 5.0 43 423-485 138-180 (218)
230 PRK05660 HemN family oxidoredu 24.3 92 0.002 35.9 4.6 62 425-496 109-171 (378)
231 PRK07094 biotin synthase; Prov 24.2 92 0.002 34.8 4.5 61 423-493 129-189 (323)
232 COG0134 TrpC Indole-3-glycerol 24.0 74 0.0016 34.8 3.4 22 468-489 142-163 (254)
233 PRK08599 coproporphyrinogen II 23.9 1E+02 0.0022 35.4 4.8 63 424-496 101-164 (377)
234 PRK10605 N-ethylmaleimide redu 23.6 1.1E+03 0.025 26.9 13.8 28 468-497 78-105 (362)
235 PRK12928 lipoyl synthase; Prov 23.6 1.7E+02 0.0038 32.5 6.4 60 417-487 217-276 (290)
236 PRK06256 biotin synthase; Vali 23.5 86 0.0019 35.3 4.1 62 421-493 150-211 (336)
237 cd05014 SIS_Kpsf KpsF-like pro 23.4 1.7E+02 0.0038 27.4 5.6 65 422-487 15-79 (128)
238 cd02803 OYE_like_FMN_family Ol 23.3 4.2E+02 0.009 29.5 9.5 86 468-562 76-164 (327)
239 PRK05939 hypothetical protein; 23.1 89 0.0019 36.3 4.2 32 461-492 140-171 (397)
240 PRK09249 coproporphyrinogen II 23.1 1.1E+02 0.0024 36.2 5.0 65 422-496 150-215 (453)
241 PRK14581 hmsF outer membrane N 23.0 7E+02 0.015 31.3 11.9 123 422-559 336-465 (672)
242 COG1640 MalQ 4-alpha-glucanotr 23.0 1.4E+02 0.003 36.1 5.7 75 397-474 16-92 (520)
243 PF02777 Sod_Fe_C: Iron/mangan 22.9 1E+02 0.0022 28.8 3.7 52 102-154 6-57 (106)
244 PF07894 DUF1669: Protein of u 22.8 68 0.0015 35.6 2.9 24 466-490 134-157 (284)
245 cd00609 AAT_like Aspartate ami 22.6 92 0.002 34.2 4.1 29 467-495 150-178 (350)
246 TIGR00542 hxl6Piso_put hexulos 22.4 1.3E+02 0.0029 32.7 5.2 52 421-486 18-69 (279)
247 PF03423 CBM_25: Carbohydrate 22.2 73 0.0016 28.8 2.5 37 142-179 17-54 (87)
248 PRK05967 cystathionine beta-ly 22.1 97 0.0021 36.1 4.2 32 461-492 158-189 (395)
249 cd06548 GH18_chitinase The GH1 22.0 96 0.0021 34.8 4.1 29 532-560 105-133 (322)
250 PRK13347 coproporphyrinogen II 22.0 1.1E+02 0.0024 36.2 4.8 64 423-496 152-216 (453)
251 smart00518 AP2Ec AP endonuclea 22.0 2.1E+02 0.0046 30.8 6.7 52 421-487 12-63 (273)
252 PRK09852 cryptic 6-phospho-bet 21.9 2.7E+02 0.0058 33.3 7.9 66 416-490 68-133 (474)
253 TIGR01211 ELP3 histone acetylt 21.7 1.1E+02 0.0023 37.2 4.5 60 423-492 206-265 (522)
254 COG1306 Uncharacterized conser 21.4 3.1E+02 0.0067 30.7 7.4 132 420-562 77-219 (400)
255 cd04733 OYE_like_2_FMN Old yel 21.3 1.2E+03 0.026 26.3 13.4 28 468-497 81-108 (338)
256 PRK05692 hydroxymethylglutaryl 21.2 3.9E+02 0.0085 29.6 8.6 60 469-563 120-180 (287)
257 PRK05799 coproporphyrinogen II 21.2 1.2E+02 0.0027 34.7 4.8 64 422-495 98-162 (374)
258 cd04747 OYE_like_5_FMN Old yel 20.9 9.9E+02 0.022 27.5 12.0 27 468-496 77-103 (361)
259 PF01261 AP_endonuc_2: Xylose 20.9 63 0.0014 32.8 2.2 45 426-487 1-45 (213)
260 PRK09028 cystathionine beta-ly 20.9 1.1E+02 0.0023 35.7 4.2 30 463-492 157-186 (394)
261 PF09154 DUF1939: Domain of un 20.9 3.5E+02 0.0076 22.7 6.1 17 877-893 41-57 (57)
262 TIGR00538 hemN oxygen-independ 20.9 1E+02 0.0022 36.4 4.2 65 422-496 150-215 (455)
263 PRK09331 Sep-tRNA:Cys-tRNA syn 20.8 83 0.0018 36.1 3.3 31 463-493 169-199 (387)
264 PLN03231 putative alpha-galact 20.8 1.3E+03 0.029 26.6 13.1 142 418-561 20-185 (357)
265 PF15640 Tox-MPTase4: Metallop 20.3 88 0.0019 30.4 2.7 28 463-490 16-43 (132)
266 PRK07379 coproporphyrinogen II 20.3 1.3E+02 0.0028 35.0 4.8 64 424-497 116-180 (400)
267 COG0174 GlnA Glutamine synthet 20.2 3.8E+02 0.0083 31.8 8.5 86 398-485 89-182 (443)
No 1
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.6e-204 Score=1753.71 Aligned_cols=865 Identities=78% Similarity=1.354 Sum_probs=827.4
Q ss_pred CCccccCCeEeecCCCCCCCCCCCCCCc----ccCCCCccceeeEEeeecCCCChhhhhhhhhhcccCCCCCCCCCCCcc
Q 002609 1 MTSLSLKTKISLNPNNSALHFNVPNKLQ----HTNFPKKGKIKIKVTCSATDQPPQQQQQQTYSKKKRNASEGDKGIDPV 76 (900)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (900)
||||+||++|+|+||+| ||+.+++|+ +++||+| |++++|+|+||++|||+||||| ...++.++.++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (872)
T PLN03244 1 MTSLSLPTQFSCHPNAS--NLPFSEKNRLAINGVNFPKK-KIKLKIRCFAAEQPQQEKQKKK--SQSKPQADADAGIDPV 75 (872)
T ss_pred CcccccccceeecCCCC--CCCcccCCccccccccCCcc-ccccceeecccCCCchhhhhhc--cCCccccccccCcCch
Confidence 89999999999999974 899999999 7789944 4999999999999999999887 5566778899999999
Q ss_pred cceeccCCCChhhHHHHHHHHHHHHHHHHHHHhccCCHHHHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCC
Q 002609 77 GFLNKVGITHKPLAQFLRERHKELKNRKDEIFKRFLNLMEFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWS 156 (900)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~ 156 (900)
|||+|+||..|+|+||||+|||+|||+|++|++++++|++||+|||+|||||+++++++|+||||||+.|+||||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~ 155 (872)
T PLN03244 76 GFLTKLGIADKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWS 155 (872)
T ss_pred hHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccc
Q 002609 157 PTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRF 236 (900)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (900)
+++|++|||||++++||+|+|+|||+|++|+|||+||||||||++||||||+||+++||++|++++||||||+++++++|
T Consensus 156 ~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (872)
T PLN03244 156 PTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRF 235 (872)
T ss_pred ccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeecCCCCCccccccccCCccccchhcccccccCCCCCCCC-eEEeCC--ceEEEEEcCCCCcEEEEeecCCC
Q 002609 237 ELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQHKDDLPSNLP-YDVIDN--GKDYDVFNVASDPRWQEKFRSKE 313 (900)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~g~~lp-a~~~~~--g~~F~l~sp~a~~V~l~l~~~~~ 313 (900)
+++++||||+||||+|||+||+++|||++|+|++|+..+++++.+.|| +.+.++ |.+|.++....+.|++..+..++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (872)
T PLN03244 236 EVAAKLYEQIFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKE 315 (872)
T ss_pred HHHHHHHHHhhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999 888888 89999999999999999999999
Q ss_pred CCCceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCCeeecCCcccccccCCCCCCceeEecCCCccccccccCCCC
Q 002609 314 PPIPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGPLERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTRP 393 (900)
Q Consensus 314 ~~~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p 393 (900)
++.++|++|.++.+.||...++.|+||++|++++.+++|..+|+|+|+++++++..+..+.+++|+|+..+.|.|++.+|
T Consensus 316 ~~~~~~~~~~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p 395 (872)
T PLN03244 316 PPIAYWLESRKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKP 395 (872)
T ss_pred CChhhHHHhhcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCC
Confidence 99999999999999999999999999999999999988888999999999999987778889999998777899999999
Q ss_pred CCCCCceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHH
Q 002609 394 KVPKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKR 473 (900)
Q Consensus 394 ~~p~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~ 473 (900)
+.|..++|||+|||++++++++|||++|+++ +++||||+++|||++|||+
T Consensus 396 ~~p~~lrIYE~HvGms~~e~kv~ty~eF~~~------------------------------vt~fFApssRYGTPeDLK~ 445 (872)
T PLN03244 396 KVPESLRIYECHVGISGSEPKISSFEEFTEK------------------------------VTNFFAASSRYGTPDDFKR 445 (872)
T ss_pred CCCCCceEEEEEeeecCCCCCcccHHHHhhc------------------------------cCcccccCcccCCHHHHHH
Confidence 9999999999999999999999999999986 5799999999999999999
Q ss_pred HHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCc
Q 002609 474 LVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQI 553 (900)
Q Consensus 474 LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygV 553 (900)
||++||++||+||||||+||++++...+++.|+|++..||+.+.+++++.||++.|||++++|++||+++++||++||||
T Consensus 446 LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhI 525 (872)
T PLN03244 446 LVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQI 525 (872)
T ss_pred HHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999987899999999888999888889999999999999999999999999999999999
Q ss_pred cEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCcc
Q 002609 554 DGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFD 633 (900)
Q Consensus 554 DGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD 633 (900)
||||||+|++|+|.|+|...|++++++|++..+|.+++.||+++|+++++.+|++++|||+++++|++|+|+.+||+|||
T Consensus 526 DGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFD 605 (872)
T PLN03244 526 DGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFD 605 (872)
T ss_pred CcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCcc
Confidence 99999999999999999878899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhh
Q 002609 634 YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLR 713 (900)
Q Consensus 634 ~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r 713 (900)
|+|+|+|+++|+++++..++.+|+++.|+++|..|+++.+++|+|+||||++++|++|++++|++++++..++....+.|
T Consensus 606 YKWnMgwmdd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~R 685 (872)
T PLN03244 606 YYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDR 685 (872)
T ss_pred ceecCcchHHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhh
Confidence 99999999999999999999999999999999778888999999999999999999999999999999999877667889
Q ss_pred hhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCccc
Q 002609 714 GCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVL 793 (900)
Q Consensus 714 ~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL 793 (900)
+++++||+++++++++|..+|+|||+|||+++|++|||+||+++++.++++|++++++.|+.|.+|+|+|++|++++++|
T Consensus 686 g~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL 765 (872)
T PLN03244 686 GCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGIL 765 (872)
T ss_pred hhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999998767999999999999999999999999999999999999878999999999999999999999
Q ss_pred ccCCceEEeecCCCeEEEEEcCcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccc
Q 002609 794 LRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRV 873 (900)
Q Consensus 794 ~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~ 873 (900)
+.+..|+.+.+++++||||.|+.+||||||++.+++.+|+|++|.+|+|+++||||+..|||+++++.+..+..+.+..+
T Consensus 766 ~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~ 845 (872)
T PLN03244 766 SRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRI 845 (872)
T ss_pred ccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCceeeccccccc
Confidence 99999999999999999999999999999999778999999999999999999999999999999876553222355578
Q ss_pred cCcceeEEEEEcCcEEEEEEEcccccC
Q 002609 874 DGLRNCIEVPLPSRTAQVYKLSRILRI 900 (900)
Q Consensus 874 ~~~~~~~~l~LP~rsa~Vl~~~~~~~~ 900 (900)
++++++++|+|||+||+||++.+||||
T Consensus 846 ~gr~~sl~l~LPprsavVlk~~~~~~~ 872 (872)
T PLN03244 846 DGLRNCLEVFLPSRTAQVYKLSRILRI 872 (872)
T ss_pred CCCCceEEEEeCCCEEEEEEEeeEeeC
Confidence 999999999999999999999999997
No 2
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.5e-199 Score=1745.56 Aligned_cols=892 Identities=74% Similarity=1.294 Sum_probs=840.7
Q ss_pred CCccccCCeEeecCCCCCCCCCCCCCCc----ccCCCCccceeeEEeeecCCCChhhhhhhhhhcccCCCCCCCCCCCcc
Q 002609 1 MTSLSLKTKISLNPNNSALHFNVPNKLQ----HTNFPKKGKIKIKVTCSATDQPPQQQQQQTYSKKKRNASEGDKGIDPV 76 (900)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (900)
|+|+++.++|+++|| ||+.+++|| ++||+|| ++++|+|+|+++|+|++|+|| ++.++.+++++|||||
T Consensus 1 ~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 72 (897)
T PLN02960 1 MVSLSLFLRFPRPPN----PLVHAEPRRLGASRVNLPRK--IGFKITCFAAPRPRQPKQKKK--RQQEPGSDAEAGVDPV 72 (897)
T ss_pred CcccccccccCCCCC----ccccccCCCCCccccCCccc--cccceeeccCCCCCcchhhhh--cccCCCCCcccCcchh
Confidence 566666666666665 888888888 7899999 999999999999999999998 7788888999999999
Q ss_pred cceeccCCCChhhHHHHHHHHHHHHHHHHHHHhccCCHHHHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCC
Q 002609 77 GFLNKVGITHKPLAQFLRERHKELKNRKDEIFKRFLNLMEFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWS 156 (900)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~ 156 (900)
|||+|+||..|+|++|||+|||+|||+|++|++++++|++||+|||+||||++++++|+|+||||||+.|+||||||||+
T Consensus 73 gf~~~~~~~~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~ 152 (897)
T PLN02960 73 GFLTRLGISDRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWS 152 (897)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccc
Q 002609 157 PTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRF 236 (900)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (900)
+++|+||||||++|+||+|+|+|||+|+||+|||+||||||||++||||||++|+|+||++|++++||||||++++|+++
T Consensus 153 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (897)
T PLN02960 153 PTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRL 232 (897)
T ss_pred cccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeecCCCCCccccccccCCccccchhcccccccCCCCCCCC-eEEeCCceEEEEEcCCCCcEEEEeecCCCCC
Q 002609 237 ELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQHKDDLPSNLP-YDVIDNGKDYDVFNVASDPRWQEKFRSKEPP 315 (900)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~g~~lp-a~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~ 315 (900)
+++++|||||||||+|||+||+++|||++|+|++|+.++++++.+.|| +.+.++|..|.++....+.||+..+..++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (897)
T PLN02960 233 EVPAKLYEQMFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPP 312 (897)
T ss_pred hhHHHHHHHhhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCCeeecCCcccccccCCCCCCceeEecCCCccccccccCCCCCC
Q 002609 316 IPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGPLERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTRPKV 395 (900)
Q Consensus 316 ~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~ 395 (900)
.++|+.|++++++||+.+++++.||++|+|+|++.+|..+++||||+++.+++++..+.+++|+|+...+|.|++++|..
T Consensus 313 ~~~~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~~v~~d~~~~~~y~W~~~~p~~ 392 (897)
T PLN02960 313 LPYWEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWYAIHWEPPPEEAYKWKFERPKV 392 (897)
T ss_pred CcceeeeeecCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccceEEEeCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999988888789999999998877777778888887544679999888777
Q ss_pred CCCceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHH
Q 002609 396 PKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLV 475 (900)
Q Consensus 396 p~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV 475 (900)
+.+++|||+|||+|+.++++|||+++++++|||||+||||+||||||++++.+.+|||++++||+|+++|||++|||+||
T Consensus 393 ~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LV 472 (897)
T PLN02960 393 PKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLV 472 (897)
T ss_pred CCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHH
Confidence 78999999999999888889999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccE
Q 002609 476 DEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDG 555 (900)
Q Consensus 476 ~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDG 555 (900)
++||++||+||||||+||++.++.+++..|+|++.+||+.+..++++.||++.|||++++||+||+++++||++||||||
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDG 552 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDG 552 (897)
T ss_pred HHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999987778889999888899888788899999999999999999999999999999999999
Q ss_pred EEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCcccc
Q 002609 556 FQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYF 635 (900)
Q Consensus 556 FRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~ 635 (900)
||||+|++|+|.|+|+.+++|+++++++...|.+++.||+++|+.+++.+|++++|||+++++|.+|+|..+||+||||+
T Consensus 553 fR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYk 632 (897)
T PLN02960 553 FQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYY 632 (897)
T ss_pred eeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccc
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhh
Q 002609 636 LNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGC 715 (900)
Q Consensus 636 ~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~ 715 (900)
|||+++++++++++..+...|++..+..++..++..++++|+|+|||||+++|++++.++|.+..+++.++....++|++
T Consensus 633 wnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~ 712 (897)
T PLN02960 633 VNLSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGV 712 (897)
T ss_pred cCCCcHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhh
Confidence 99999999999999988888999888888865667889999999999999999999999999998888777765567888
Q ss_pred HHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCccccc
Q 002609 716 SLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLR 795 (900)
Q Consensus 716 ~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~ 795 (900)
++++|+++++++++|++||+|||+|||+++++++|+|+|+.+++.++++|++++.+.++.|++|+|+|++||+++|+|+.
T Consensus 713 al~~~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~ 792 (897)
T PLN02960 713 SLHKMIRLITFTLGGSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSR 792 (897)
T ss_pred hHHHHHHHHHHHhCCCCCEeeCccccCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcC
Confidence 99999999999998778999999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCceEEeecCCCeEEEEEcCcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccC
Q 002609 796 GSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDG 875 (900)
Q Consensus 796 g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~ 875 (900)
+..++...+.+++||+|.|+.++||+||++..++..|+|++|.+|.|++++|||+..|||.++++.......+...++++
T Consensus 793 g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g 872 (897)
T PLN02960 793 GLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDG 872 (897)
T ss_pred CcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCC
Confidence 99999888888899999999999999999976678999999999999999999999999999876543222355667999
Q ss_pred cceeEEEEEcCcEEEEEEEcccccC
Q 002609 876 LRNCIEVPLPSRTAQVYKLSRILRI 900 (900)
Q Consensus 876 ~~~~~~l~LP~rsa~Vl~~~~~~~~ 900 (900)
++++++|+|||++++||++.+|++|
T Consensus 873 ~~~si~i~LPp~sa~v~k~~~~~~~ 897 (897)
T PLN02960 873 LRNCLELTLPSRSAQVYKLARILRI 897 (897)
T ss_pred CCceEEEEeCCCEEEEEEEeeeecC
Confidence 9999999999999999999999997
No 3
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.5e-137 Score=1220.81 Aligned_cols=661 Identities=43% Similarity=0.829 Sum_probs=613.9
Q ss_pred eeccCCCChhhHHHHHHHHHHHHHHHHHHHhccCCHHHHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCCCC
Q 002609 79 LNKVGITHKPLAQFLRERHKELKNRKDEIFKRFLNLMEFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPT 158 (900)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~ 158 (900)
|+++||||+||++.|+.|++.+++++++|.+.+|||++||+||++||+|..+ ++++||||||+|++|+|+||||+|+++
T Consensus 62 ~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~-~g~~FrvWAP~A~~V~LvGdFN~W~~~ 140 (758)
T PLN02447 62 IYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSE-GGITYREWAPGAKAAALIGDFNNWNPN 140 (758)
T ss_pred eeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEec-CCEEEEEECCCCCEEEEEEecCCCCCC
Confidence 6688999999999999999999999999999999999999999999999876 679999999999999999999999999
Q ss_pred CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccc
Q 002609 159 ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFEL 238 (900)
Q Consensus 159 ~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (900)
++||+ ++++|+|+++||+ .
T Consensus 141 ~~~M~-----~~~~GvWe~~ip~--~------------------------------------------------------ 159 (758)
T PLN02447 141 AHWMT-----KNEFGVWEIFLPD--A------------------------------------------------------ 159 (758)
T ss_pred ccCce-----eCCCCEEEEEECC--c------------------------------------------------------
Confidence 99996 8999999999975 0
Q ss_pred cccceeeecCCCCCccccccccCCccccchhcccccccCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCce
Q 002609 239 PAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQHKDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPY 318 (900)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~ 318 (900)
+|
T Consensus 160 ---------------------------------------------------~g--------------------------- 161 (758)
T PLN02447 160 ---------------------------------------------------DG--------------------------- 161 (758)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 11
Q ss_pred eeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCC-eeecCCcccccccCCCC--CCceeEecCCCccccccccCCCCCC
Q 002609 319 WLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGP-LERIPAWATYVQPDADG--KEAFAIHWEPSPEFAYKWRNTRPKV 395 (900)
Q Consensus 319 ~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~-~~~~dpya~~~~~~~~~--~~~~~~~~~p~~~~~~~w~~~~p~~ 395 (900)
.+.++||++|+|+|++.+|. .+++||||+++.+++.. ....+++|+|+..++|.|++++|+.
T Consensus 162 ---------------~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~ 226 (758)
T PLN02447 162 ---------------SPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPR 226 (758)
T ss_pred ---------------cccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCC
Confidence 24588999999999988775 67899999998887543 2456788998655679999988877
Q ss_pred CCCceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHH
Q 002609 396 PKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLV 475 (900)
Q Consensus 396 p~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV 475 (900)
|.+++|||+|||+++.++++|||+++++++|||||+||||+||||||++++.+++|||++++||+|+++|||++|||+||
T Consensus 227 ~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LV 306 (758)
T PLN02447 227 PAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLI 306 (758)
T ss_pred CCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHH
Confidence 78899999999999888889999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccE
Q 002609 476 DEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDG 555 (900)
Q Consensus 476 ~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDG 555 (900)
++||++||+||||||+||++.+...++..|+|++..||+.+..+++..|++.+|||++++||+||+++++||++||||||
T Consensus 307 d~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDG 386 (758)
T PLN02447 307 DKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDG 386 (758)
T ss_pred HHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999988778889999888899888788889999999999999999999999999999999999
Q ss_pred EEecCcccchhccCCcc-ccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccc
Q 002609 556 FQFHSLSSMIYTHNGFA-SLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDY 634 (900)
Q Consensus 556 FRfD~~~~m~~~~~g~~-~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~ 634 (900)
||||+|++|+|.|||.. .|+++|.+|++...|.+++.||+++|+.+++.+|++++|||+++++|++|+|+.+||+||||
T Consensus 387 fRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDy 466 (758)
T PLN02447 387 FRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDY 466 (758)
T ss_pred ccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcce
Confidence 99999999999999975 68889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchh----h
Q 002609 635 FLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNN----L 710 (900)
Q Consensus 635 ~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~----~ 710 (900)
+|+|+|+++|+++++..+++.|+++.|+++|. ++++.+++|.|+|||||+++|++|++++|++.+|++.|+.+. .
T Consensus 467 kw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~-~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~ 545 (758)
T PLN02447 467 RLAMAIPDKWIELLKEKRDEDWSMGDIVHTLT-NRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPV 545 (758)
T ss_pred EECCccchHHHHHHhhCCCcccCHHHHHHHHh-cccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhh
Confidence 99999999999999999999999999999996 667889999999999999999999999999999999988643 5
Q ss_pred hhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccc--cCchHHHHHHHHHHHHH
Q 002609 711 LLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANR--LHSNLYSFDQELMKLDE 788 (900)
Q Consensus 711 ~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~--~~~~l~~f~r~Li~LRk 788 (900)
++|+++||||+++++++++|.++|+|||+||||++|+||||.+|+++++.++++|++++++ .|+.|.+|+|+|++|++
T Consensus 546 ~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~ 625 (758)
T PLN02447 546 VDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDE 625 (758)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHh
Confidence 6899999999999999999966899999999999999999999999999999999999865 69999999999999999
Q ss_pred hCcccccCCceEEeecCCCeEEEEEcCcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceee
Q 002609 789 NAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRT 868 (900)
Q Consensus 789 ~~paL~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~ 868 (900)
++|+|..+..|+...+++++||+|.|+.+||||||++..++.+|+|++|.+|+|+++||||+.+|||+++++.... ..+
T Consensus 626 ~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~ilnSD~~~fGG~~~~~~~~~-~~~ 704 (758)
T PLN02447 626 KYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIVLDSDAWEFGGFGRVDHDAD-HFT 704 (758)
T ss_pred cCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEEECCCchhcCCCCccCCCcc-EEe
Confidence 9999999999999999999999999999999999999768999999999999999999999999999998865432 345
Q ss_pred eeccccCcceeEEEEEcCcEEEEEEEcc
Q 002609 869 ISKRVDGLRNCIEVPLPSRTAQVYKLSR 896 (900)
Q Consensus 869 ~~~~~~~~~~~~~l~LP~rsa~Vl~~~~ 896 (900)
.+.++++++++++|+|||++++||++.+
T Consensus 705 ~~~~~~~~~~s~~v~iP~~~~~vl~~~~ 732 (758)
T PLN02447 705 PEGNFDNRPHSFMVYAPSRTAVVYAPVD 732 (758)
T ss_pred cccCcCCCCcEEEEEeCCceEEEEEECC
Confidence 6678999999999999999999999864
No 4
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-121 Score=1041.50 Aligned_cols=719 Identities=43% Similarity=0.742 Sum_probs=645.0
Q ss_pred CCccccCCeEeecCCCCCCCCCCCCCCc----ccCCCCccceeeEEeeecCCCChhhhhhhhhhcccCCCCCCCCCCCcc
Q 002609 1 MTSLSLKTKISLNPNNSALHFNVPNKLQ----HTNFPKKGKIKIKVTCSATDQPPQQQQQQTYSKKKRNASEGDKGIDPV 76 (900)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (900)
|...+..+||+.+++ ...+.+... .++.+++ ... ..+.++++.+. ...+ +...||
T Consensus 1 ~~~~~~~sr~~~~~~----~~~~~~~~~~~~~~A~~~~~--~~~-------~~~~~~~e~~~--~~~p-~~~ve~----- 59 (757)
T KOG0470|consen 1 MLDCLISSRFYWHTK----LVIVWSVDTLEKTGALKPAK--LEF-------YDLRSALEAKS--GDLP-ADVVEK----- 59 (757)
T ss_pred Ccchhhhhcceeccc----ceEEeeeecccccccccccc--ccc-------hhhHHHhhhhc--CCCC-hHHhhc-----
Confidence 556677888999998 333333332 3344444 222 55566666664 3344 788999
Q ss_pred cceeccCCCChhhHHHHHHHHHHHHHHHHHHHhccCCHHHHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCC
Q 002609 77 GFLNKVGITHKPLAQFLRERHKELKNRKDEIFKRFLNLMEFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWS 156 (900)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~ 156 (900)
+.++|++|++|+++|++|++.+++.+..|.+.+++|+.|+++|+.||+|+++++.|.|+||||+|++++++||||+|+
T Consensus 60 --~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~ 137 (757)
T KOG0470|consen 60 --FYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWN 137 (757)
T ss_pred --ccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccccccCCCC
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccc
Q 002609 157 PTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRF 236 (900)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (900)
...+.++ .++++|+|+|++|++
T Consensus 138 ~~~~~~~----~k~~~g~w~i~l~~~------------------------------------------------------ 159 (757)
T KOG0470|consen 138 PSSNELK----PKDDLGVWEIDLPPK------------------------------------------------------ 159 (757)
T ss_pred CcccccC----cccccceeEEecCcc------------------------------------------------------
Confidence 9999986 399999999998871
Q ss_pred cccccceeeecCCCCCccccccccCCccccchhcccccccCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCC
Q 002609 237 ELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQHKDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPI 316 (900)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~ 316 (900)
. +|
T Consensus 160 ---------------------------------------~-------------~~------------------------- 162 (757)
T KOG0470|consen 160 ---------------------------------------V-------------NG------------------------- 162 (757)
T ss_pred ---------------------------------------c-------------CC-------------------------
Confidence 0 01
Q ss_pred ceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCC-eeecCCcccccccCCCCCCceeEecCCCccccccccCCCCCC
Q 002609 317 PYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGP-LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTRPKV 395 (900)
Q Consensus 317 ~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~-~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~ 395 (900)
.+.++|++.+++.+.++.|+ +.++||||+.+.+++...+...+.|+|+++..|+|++++|++
T Consensus 163 -----------------s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~ 225 (757)
T KOG0470|consen 163 -----------------SGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKI 225 (757)
T ss_pred -----------------CccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCC
Confidence 23567999999999999995 789999999999987777888899999766667777778888
Q ss_pred CC-CceEEEEec-CccCCCCCCCC---hhhHHHhhhhHHHHcCcceEEEeeeeec-CCCCCCCCccCCCcccCCCCCCHH
Q 002609 396 PK-SLRIYECHV-GISGSKPKISS---FNEFTEKVLPHVKEAGYNVIQLFGVVEH-KDYFTVGYRVTNLYAVSSRYGTPD 469 (900)
Q Consensus 396 p~-~~vIYE~hV-~~~~~~~~~Gt---~~g~~ek~L~yLk~LGvn~I~LmPv~e~-~~~~~wGY~~~~yfa~~~~yGt~~ 469 (900)
|+ +++|||+|| |+++.++++-+ |++|++|+|||||+||+||||||||+|| ..+++|||+|++||||.+||||++
T Consensus 226 P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~ 305 (757)
T KOG0470|consen 226 PESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPE 305 (757)
T ss_pred ChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCC
Confidence 86 999999999 66666666555 9999999999999999999999999999 688899999999999999999999
Q ss_pred ------HHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCC-CccccCCCCCccCCCCCccccCCCHHHHHHHHH
Q 002609 470 ------DFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSN-DCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLS 542 (900)
Q Consensus 470 ------elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~-~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld 542 (900)
|||.||++||.+||.|||||||||++++..++++.|||.+ .+||+.+++++|+.|+++.|||++|+|+++|++
T Consensus 306 s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~ 385 (757)
T KOG0470|consen 306 SPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLS 385 (757)
T ss_pred cccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHH
Confidence 9999999999999999999999999998889999999965 999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccEEEecCcccchhccCCcc-ccCCChhhhhhcc---cchhHHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 002609 543 NLNWWVVEYQIDGFQFHSLSSMIYTHNGFA-SLTGDLEEYCNQY---VDKDALLYLILANEILHALHPNIITIAEDATYY 618 (900)
Q Consensus 543 ~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~-~~~g~~~~~~~~~---~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~ 618 (900)
+|+||++||||||||||+|++|+|.++|.. .|+|+|.+|++.. ++.+++.+++.+++.++...|++|++||+.++|
T Consensus 386 nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm 465 (757)
T KOG0470|consen 386 NLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGM 465 (757)
T ss_pred HHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccC
Confidence 999999999999999999999999999986 5999999999987 889999999999999999999999999999999
Q ss_pred CCc-cccccCCCCCcc--ccccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEeccccccccccCC-Cchhh
Q 002609 619 PGL-CEPTTQGGLGFD--YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGG-RSFAE 694 (900)
Q Consensus 619 p~l-~~~~~~gg~GFD--~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~-~tl~~ 694 (900)
|++ |.|..+|+.||| |+.++..+++|++.|++..+.+|.++.+...++ |++.++++++|+++|||+++|+ +|+++
T Consensus 466 ~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~lt-N~R~~e~~v~y~~~HDq~~v~d~~T~af 544 (757)
T KOG0470|consen 466 PGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLT-NRRYPEKSVNYAESHDQALVGDLVTIAF 544 (757)
T ss_pred CCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeee-ccccccceeeeeeccCCccccceeeecc
Confidence 999 999999999999 999999999999999998999999999777775 8899999999999999999999 99999
Q ss_pred -hhcccccCCCCCchh----hhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccc-ccccc
Q 002609 695 -ILFGEISEHSPDTNN----LLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANR-HWDLL 768 (900)
Q Consensus 695 -~l~~~~~~~~~~~~~----~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~-~W~~~ 768 (900)
|++++.++..++.+. .++|++.+|||+++|+++++|++||+||||||||++|+++|+.+||+++..+++ +|++.
T Consensus 545 ~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~ 624 (757)
T KOG0470|consen 545 KWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLA 624 (757)
T ss_pred hhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCccccccCccccccc
Confidence 999999888887553 678999999999999999999999999999999999999999999999999888 99988
Q ss_pred ccc--cC-chHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEcCcEEEEEeCCCCCcccceEEeccCCCeEEEE
Q 002609 769 ANR--LH-SNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQII 845 (900)
Q Consensus 769 ~~~--~~-~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~v 845 (900)
+.+ ++ +.+.+|.+.|..|..++-.+..+.+++...++.+.+++|+|+.+++|||++++.++.+|.|++..+|+|++|
T Consensus 625 ~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iV 704 (757)
T KOG0470|consen 625 DSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIV 704 (757)
T ss_pred cchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEE
Confidence 866 34 558889999999988888888899999988999999999999999999999999999999999999999999
Q ss_pred ecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEEEEEEcc
Q 002609 846 LNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSR 896 (900)
Q Consensus 846 l~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~~~ 896 (900)
+++|.+.+||+.+++..... .+....+++++.+++|++|+++++||....
T Consensus 705 l~sd~p~~~~~~rl~dt~~~-~p~d~~~~g~~~~l~VY~~~~~a~vl~~~~ 754 (757)
T KOG0470|consen 705 LNSDRPKGGGWNRLDDTALF-FPYDFRSEGRPVSLQVYIPSRTATVLALLD 754 (757)
T ss_pred ECCCCCCCCCcccccccccc-CccccccCCeeeeEEEEeccCcceEeeecc
Confidence 99999999999999876543 366677889999999999999999998754
No 5
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.7e-99 Score=917.02 Aligned_cols=680 Identities=24% Similarity=0.401 Sum_probs=524.1
Q ss_pred HHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhh
Q 002609 116 EFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQ 195 (900)
Q Consensus 116 ~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~ 195 (900)
+..+.|+.||+|.... |++|++|||+|++|+||||||+ ++.|||+ ..++.|+|+++|| +++|+
T Consensus 13 ~~~~~~~~lGah~~~~-g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~----~~~~~G~w~~~ip--~~~g~-------- 75 (726)
T PRK05402 13 RHHDPFSVLGPHPTGA-GLVVRALLPGAEEVWVILPGGG--RKLAELE----RLHPRGLFAGVLP--RKGPF-------- 75 (726)
T ss_pred ccCCHHHhcCCCCCCC-cEEEEEECCCCeEEEEEeecCC--Cccccce----EcCCCceEEEEec--CCCCC--------
Confidence 4467899999998655 7999999999999999999995 7889997 3578999999999 78887
Q ss_pred hcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhcccccc
Q 002609 196 QYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQH 275 (900)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 275 (900)
-|+|.+-+ +|+.+...|++-.. + --+++++..+= .-.
T Consensus 76 ~YKy~i~~--~g~~~~k~DPyaf~-----------------------------~--~~~~~~~~~~~----------~g~ 112 (726)
T PRK05402 76 DYRLRVTW--GGGEQLIDDPYRFG-----------------------------P--LLGELDLYLFG----------EGT 112 (726)
T ss_pred CeEEEEEe--CCceeEeccccccC-----------------------------C--CCCHHHHHHHh----------CCc
Confidence 57777665 34433222222110 0 00111111100 001
Q ss_pred cCCCCCCCCeEEeC----CceEEEEEcCCCCcEEEEe-ecCCCCCCceeeeeee--cCccEEEEEeCCCCCCCEEEEEEE
Q 002609 276 KDDLPSNLPYDVID----NGKDYDVFNVASDPRWQEK-FRSKEPPIPYWLETRK--GRKAWLKKYTPGIPHGSKYRVYFN 348 (900)
Q Consensus 276 ~~~~g~~lpa~~~~----~g~~F~l~sp~a~~V~l~l-~~~~~~~~~~~~~~~~--~~~vW~~~~v~~~~~g~~Y~y~v~ 348 (900)
..++...|+|++.. +|++|+||||.|++|+|+. |+.-... ..+|++ ..|+| +++++++.+|..|+|++.
T Consensus 113 ~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~~---~~~m~~~~~~Gvw-~~~i~~~~~g~~Y~y~v~ 188 (726)
T PRK05402 113 HLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDGR---RHPMRLRGESGVW-ELFIPGLGEGELYKFEIL 188 (726)
T ss_pred cchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCCc---cccceEcCCCCEE-EEEeCCCCCCCEEEEEEe
Confidence 12467789999885 7899999999999999998 3321111 235665 45788 999999999999999999
Q ss_pred CCCCC-eeecCCcccccccCCCCCCceeEecCCCccccccccCCC-----CC---CCCCceEEEEecCccCC---CCCCC
Q 002609 349 TPDGP-LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTR-----PK---VPKSLRIYECHVGISGS---KPKIS 416 (900)
Q Consensus 349 ~~~g~-~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-----p~---~p~~~vIYE~hV~~~~~---~~~~G 416 (900)
..+|. .+..||||+++...+.. ..+++++ ..|+|+++. ++ ...+++|||+|||+|+. .++.|
T Consensus 189 ~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~---~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g 262 (726)
T PRK05402 189 TADGELLLKADPYAFAAEVRPAT---ASIVADL---SQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFL 262 (726)
T ss_pred CCCCcEeecCCCceEEEecCCCC---cEEEeCC---ccCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCccc
Confidence 87766 46789999998765322 2345565 368888763 21 23689999999999974 35679
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
||+++++++|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~ 342 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPK 342 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 99999999669999999999999999999988899999999999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCC
Q 002609 497 DQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTG 576 (900)
Q Consensus 497 ~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g 576 (900)
++ .++..|+|++.+++.....+.++.|++..||+++|+||++|+++++||++||||||||||++.+|++.+.+... |
T Consensus 343 ~~-~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~--g 419 (726)
T PRK05402 343 DA-HGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKE--G 419 (726)
T ss_pred Cc-cchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccc--c
Confidence 75 45777888653333333456778899889999999999999999999999999999999999999887754321 1
Q ss_pred Chh-hhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCC-
Q 002609 577 DLE-EYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH- 654 (900)
Q Consensus 577 ~~~-~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~- 654 (900)
.+. .......+.+++.||+.++..+++++|++++|||+++.+|.++.+...+|+|||+.||++++++++++++..+..
T Consensus 420 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~ 499 (726)
T PRK05402 420 EWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYR 499 (726)
T ss_pred ccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccc
Confidence 110 001112345688999999999999999999999999999999999888999999999999999888888754432
Q ss_pred CccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCcee
Q 002609 655 EWSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYL 734 (900)
Q Consensus 655 ~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pl 734 (900)
.+....+...+..+ ..+. ..+++|||+++.|+.++..++.+.. + ...+..|++.+++||++| +||
T Consensus 500 ~~~~~~~~~~~~~~--~~e~-~~l~~sHD~~~~g~~~l~~~~~g~~-~----------~~~~~lrl~~~~~~t~pG-~Pl 564 (726)
T PRK05402 500 KYHHNELTFSLLYA--YSEN-FVLPLSHDEVVHGKGSLLGKMPGDD-W----------QKFANLRAYYGYMWAHPG-KKL 564 (726)
T ss_pred cccccchhHHHhHh--hhcc-ccCCCCCceeeeCcccHHhhCCCCH-H----------HHHHHHHHHHHHHHHCCC-cCE
Confidence 22222222222111 1122 3477899999888888887765421 0 122345677778888888 699
Q ss_pred eeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccC------CceEEeecCCCe
Q 002609 735 NFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRG------SPSVHHVNDAKM 808 (900)
Q Consensus 735 iy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g------~~~i~~~~~~~~ 808 (900)
||||||||+++.++ ..++++|++.+.+.++.+++|+|+||+||+++|+|+.+ ..++...+.+.+
T Consensus 565 if~G~E~g~~~~~~----------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~ 634 (726)
T PRK05402 565 LFMGGEFGQGREWN----------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENS 634 (726)
T ss_pred eeCchhcCCCCCCC----------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCC
Confidence 99999999997643 14689999876666789999999999999999999854 234443345668
Q ss_pred EEEEEcC------cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEE
Q 002609 809 VICYMRG------PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEV 882 (900)
Q Consensus 809 Vlaf~R~------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l 882 (900)
|++|.|. .++||+|+++. ...+|.|++|.+|+|+++++||+..|||.+..+... ..+...++++++++++|
T Consensus 635 vlaf~R~~~~~~~~vlvv~N~~~~-~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~~--~~~~~~~~~g~~~~~~i 711 (726)
T PRK05402 635 VLSFLRRGKDDGEPLLVVCNFTPV-PRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGGG--VHAEEVPWHGRPHSLSL 711 (726)
T ss_pred EEEEEEecCCCCCeEEEEEeCCCC-cccceEECCCCCCeEEEEEcCcchhhCCCCCCCCCc--eeccccccCCCCCEEEE
Confidence 9999994 49999999987 457899999988999999999999999998765432 34556679999999999
Q ss_pred EEcCcEEEEEEEcc
Q 002609 883 PLPSRTAQVYKLSR 896 (900)
Q Consensus 883 ~LP~rsa~Vl~~~~ 896 (900)
+|||+|++||++..
T Consensus 712 ~lp~~~~~v~~~~~ 725 (726)
T PRK05402 712 TLPPLATLILKPEA 725 (726)
T ss_pred EeCCCEEEEEEEcC
Confidence 99999999999864
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-97 Score=883.74 Aligned_cols=578 Identities=27% Similarity=0.490 Sum_probs=472.6
Q ss_pred hhhccccceEEecc---CeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhh
Q 002609 118 STGYEIVGMHRNVE---HRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYF 194 (900)
Q Consensus 118 a~~~~~~G~~~~~~---~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~ 194 (900)
...|+.||+|...+ .+++|++|||+|++|+|+||||+|++.++||+ +.+.|+|+++||+
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~-----~~~~GvW~~~vpg------------- 82 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQ-----RLDFGFWGAFVPG------------- 82 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccccccccc-----ccCCCEEEEEECC-------------
Confidence 46899999997654 36999999999999999999999999999996 5567888777654
Q ss_pred hhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhccccc
Q 002609 195 QQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQ 274 (900)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 274 (900)
T Consensus 83 -------------------------------------------------------------------------------- 82 (639)
T PRK14706 83 -------------------------------------------------------------------------------- 82 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCC-
Q 002609 275 HKDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGP- 353 (900)
Q Consensus 275 ~~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~- 353 (900)
+.+|+.|+|+|++.+|.
T Consensus 83 --------------------------------------------------------------~~~g~~Yky~I~~~~g~~ 100 (639)
T PRK14706 83 --------------------------------------------------------------ARPGQRYKFRVTGAAGQT 100 (639)
T ss_pred --------------------------------------------------------------CCCCCEEEEEEECCCCCE
Confidence 45788999999987665
Q ss_pred eeecCCcccccccCCCCCCceeEecCCCccccccccCCCC------CCCCCceEEEEecCccCCC--CCCCChhhHHHhh
Q 002609 354 LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTRP------KVPKSLRIYECHVGISGSK--PKISSFNEFTEKV 425 (900)
Q Consensus 354 ~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p------~~p~~~vIYE~hV~~~~~~--~~~Gt~~g~~ek~ 425 (900)
.+++||||+++...+.. .++++++ .|+|+++.. ..+.+++|||+|||+|+.. +..|||+++++++
T Consensus 101 ~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l 173 (639)
T PRK14706 101 VDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRL 173 (639)
T ss_pred EeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHH
Confidence 56899999998765432 2345443 488987642 2235699999999999753 3468999999996
Q ss_pred hhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccccccC
Q 002609 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQF 505 (900)
Q Consensus 426 L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~f 505 (900)
++|||+|||||||||||++++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+. .++..|
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~-~~l~~~ 252 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE-SGLAHF 252 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch-hhhhcc
Confidence 7999999999999999999999899999999999999999999999999999999999999999999999875 567889
Q ss_pred CCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcc
Q 002609 506 DGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQY 585 (900)
Q Consensus 506 dg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~ 585 (900)
||++.++|..+..+++..|++..||+++++||+||+++++||++||||||||||++++|+|.|.+-..+. ..+++..
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~---~~~~gg~ 329 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWV---PNIHGGR 329 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccccc---ccccCCc
Confidence 9877665665566788899998899999999999999999999999999999999999999876543221 2233344
Q ss_pred cchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCCC-ccHHHHHHH
Q 002609 586 VDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHE-WSMSKIVST 664 (900)
Q Consensus 586 ~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~-~~~~~i~~~ 664 (900)
.+.+++.||+.+++.+++.+|++++|||+++.+|.+++|... |+|||++|||+|+++++++++..+..+ .....+...
T Consensus 330 ~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~ 408 (639)
T PRK14706 330 ENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFF 408 (639)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchh
Confidence 567899999999999999999999999999999999999865 999999999999999999988665432 112222221
Q ss_pred hhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCC
Q 002609 665 LVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHP 744 (900)
Q Consensus 665 l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~ 744 (900)
.. ....+..| |++|||++++|++++..++.+... ...+..|++.++++|++| .||||||+|||+.
T Consensus 409 ~~--y~~~e~~i-l~~SHDev~~~k~sl~~k~~g~~~-----------~~~a~~r~~~~~~~t~PG-~pLiFmG~EfG~~ 473 (639)
T PRK14706 409 NV--YRTSENYV-LAISHDEVVHLKKSMVMKMPGDWY-----------TQRAQYRAFLAMMWTTPG-KKLLFMGQEFAQG 473 (639)
T ss_pred hh--hhccccEe-cCCCCccccCCccchHhHcCCCHH-----------HHHHHHHHHHHHHHhCCC-CcEEEeccccCCC
Confidence 11 12223333 899999999888888877655310 112234555567788888 5999999999976
Q ss_pred CCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccC------CceEEeecCCCeEEEEEcC---
Q 002609 745 KRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRG------SPSVHHVNDAKMVICYMRG--- 815 (900)
Q Consensus 745 ~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g------~~~i~~~~~~~~Vlaf~R~--- 815 (900)
+.++ ..++++|++.+.+.++.|.+|+|+||+||+++|+|+.+ ..++...+.+++|+||.|.
T Consensus 474 ~ew~----------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~ 543 (639)
T PRK14706 474 TEWN----------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSE 543 (639)
T ss_pred CCCC----------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCC
Confidence 4432 24689999987656778999999999999999999643 4567666667789999994
Q ss_pred ---cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEEEE
Q 002609 816 ---PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVY 892 (900)
Q Consensus 816 ---~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl 892 (900)
.++||+||++. .+.+|+|++|.+|+|++++|||+..|||.++.+.. +.+...++++++++++|+|||++++||
T Consensus 544 ~~~~vlvV~Nfs~~-~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~~---~~~~~~~~~g~~~si~i~lp~~~~~~~ 619 (639)
T PRK14706 544 SGAWSLAVANLTPV-YREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQPD---LMASQEGWHGQPHSLSLNLPPSSVLIL 619 (639)
T ss_pred CCeeEEEEEeCCCC-CcCCeEECCCCCCeEEEEEcCCccccCCCCCCCCc---eeccccccCCCccEEEEEeCCcEEEEE
Confidence 29999999996 68899999999999999999999999999987642 345666799999999999999999999
Q ss_pred EEcc
Q 002609 893 KLSR 896 (900)
Q Consensus 893 ~~~~ 896 (900)
++++
T Consensus 620 ~~~~ 623 (639)
T PRK14706 620 EFVG 623 (639)
T ss_pred EECC
Confidence 9864
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.6e-96 Score=903.46 Aligned_cols=577 Identities=27% Similarity=0.467 Sum_probs=477.4
Q ss_pred HhhhccccceEEec-------cCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCC
Q 002609 117 FSTGYEIVGMHRNV-------EHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKP 189 (900)
Q Consensus 117 fa~~~~~~G~~~~~-------~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~ 189 (900)
.-+.|++||.|... ..++.|++|||+|++|+|+||||+|+++.|||+ ...+.|+|+++||+
T Consensus 616 ~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~----~~~~~GvW~~fipg-------- 683 (1224)
T PRK14705 616 HEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMR----SLGSSGVWELFIPG-------- 683 (1224)
T ss_pred hhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccce----ECCCCCEEEEEECC--------
Confidence 34679999999743 247999999999999999999999999999997 23567888877654
Q ss_pred cchhhhhcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchh
Q 002609 190 DELYFQQYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYK 269 (900)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (900)
T Consensus 684 -------------------------------------------------------------------------------- 683 (1224)
T PRK14705 684 -------------------------------------------------------------------------------- 683 (1224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecCccEEEEEeCCCCCCCEEEEEEEC
Q 002609 270 AWKEQHKDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNT 349 (900)
Q Consensus 270 ~w~~~~~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~ 349 (900)
+..|..|+|+|.+
T Consensus 684 -------------------------------------------------------------------~~~G~~Yky~i~~ 696 (1224)
T PRK14705 684 -------------------------------------------------------------------VVAGACYKFEILT 696 (1224)
T ss_pred -------------------------------------------------------------------CCCCCEEEEEEEc
Confidence 4567899999998
Q ss_pred CCCC-eeecCCcccccccCCCCCCceeEecCCCccccccccCC-----CC-CC--CCCceEEEEecCccCCCCCCCChhh
Q 002609 350 PDGP-LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNT-----RP-KV--PKSLRIYECHVGISGSKPKISSFNE 420 (900)
Q Consensus 350 ~~g~-~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~-----~p-~~--p~~~vIYE~hV~~~~~~~~~Gt~~g 420 (900)
.+|. ....||||++....+.. ..+++++ .|.|++. +. .. ..+++|||+|||+|+.. ++|++
T Consensus 697 ~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~----~~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~~---~~~~~ 766 (1224)
T PRK14705 697 KAGQWVEKADPLAFGTEVPPLT---ASRVVEA----SYAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRLG---LGYRE 766 (1224)
T ss_pred CCCcEEecCCccccccccCCCC---CeEEeCC----CCCcCChhhhhccccCCCCcCCcEEEEEEecccccC---CchHH
Confidence 7776 46789999987654322 2344454 3777664 22 22 26899999999999863 89999
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccc
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMV 500 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~ 500 (900)
+++++|||||+|||||||||||+|++..+||||++++||+|+++|||++|||+||++||++||+||||+|+||++.+. +
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~ 845 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-W 845 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-h
Confidence 999878999999999999999999999999999999999999999999999999999999999999999999999875 6
Q ss_pred ccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhh
Q 002609 501 GLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEE 580 (900)
Q Consensus 501 ~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~ 580 (900)
++..|+|++.+++.....+.++.||+..|||++++||+||+++++||++||||||||||+|++|+|.|.+ +..|. +
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dys--r~~g~--w 921 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYS--REEGQ--W 921 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccc--ccccc--c
Confidence 8889998754333334457889999999999999999999999999999999999999999999987743 22222 2
Q ss_pred hhhc---ccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCC-CCc
Q 002609 581 YCNQ---YVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPD-HEW 656 (900)
Q Consensus 581 ~~~~---~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~-~~~ 656 (900)
..+. ..|.+++.||+.+++.+++.+|++++|||+++.+|.+++|+..||+||||+|||+|+++++++++.++. ..|
T Consensus 922 ~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~ 1001 (1224)
T PRK14705 922 RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKW 1001 (1224)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhc
Confidence 2232 346689999999999999999999999999999999999999999999999999999999999998775 356
Q ss_pred cHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeee
Q 002609 657 SMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNF 736 (900)
Q Consensus 657 ~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy 736 (900)
.++.+..++... ..+ .+.+..|||+...|+.++..++.++.. ...+..+++.+++++.+| .||||
T Consensus 1002 ~~~~ltf~~~ya--~~e-~fvl~~SHDevvhgk~sl~~km~Gd~~-----------~k~a~lR~~~a~~~~~PG-k~LlF 1066 (1224)
T PRK14705 1002 HHGTITFSLVYA--FTE-NFLLPISHDEVVHGKGSMLRKMPGDRW-----------QQLANLRAFLAYQWAHPG-KQLIF 1066 (1224)
T ss_pred ccchHHHHHHHH--hhc-CEecccccccccccchhHHHhCCCcHH-----------HHHHHHHHHHHHHHhcCC-cCEEE
Confidence 777777777532 222 244677999998898888887765421 111223455567777888 69999
Q ss_pred ccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCccccc------CCceEEeecCCCeEE
Q 002609 737 MGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLR------GSPSVHHVNDAKMVI 810 (900)
Q Consensus 737 ~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~------g~~~i~~~~~~~~Vl 810 (900)
||+|||+...++ +...++|.+.+.+.++.+..|+|+|++||+++|+|+. ++.|+...+.+++|+
T Consensus 1067 MG~Efgq~~ew~----------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vl 1136 (1224)
T PRK14705 1067 MGTEFGQEAEWS----------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVL 1136 (1224)
T ss_pred CccccCCCCCcc----------ccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEE
Confidence 999999987653 2356999999877889999999999999999999973 356676666778899
Q ss_pred EEEcC-----cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEc
Q 002609 811 CYMRG-----PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLP 885 (900)
Q Consensus 811 af~R~-----~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP 885 (900)
+|.|. .++||+||++. .+.+|+|++|.+|.|++++|||+..|||.+..+.+. ..+...+|+|++++++|+||
T Consensus 1137 af~R~~~~~~~vlvv~Nftp~-~~~~y~igvp~~G~y~eilnsd~~~ygGsg~~n~~~--~~~~~~~~~g~~~s~~i~lP 1213 (1224)
T PRK14705 1137 SFIRWDGDGNPLVCAINFSGG-PHKGYTLGVPAAGAWTEVLNTDHETYGGSGVLNPGS--LKATTEGQDGQPATLTVTLP 1213 (1224)
T ss_pred EEEEeCCCCCEEEEEEcCCCC-CccCceECCCCCCeEEEEEeCchhhcCCCCcCCCCc--eeecccccCCCCceEEEEec
Confidence 99993 49999999997 678899999999999999999999999999876554 34566779999999999999
Q ss_pred CcEEEEEEEc
Q 002609 886 SRTAQVYKLS 895 (900)
Q Consensus 886 ~rsa~Vl~~~ 895 (900)
|.+++||++.
T Consensus 1214 pl~~~~~~~~ 1223 (1224)
T PRK14705 1214 PLGASFFAPA 1223 (1224)
T ss_pred CCEEEEEEEC
Confidence 9999999875
No 8
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.7e-95 Score=858.38 Aligned_cols=673 Identities=24% Similarity=0.379 Sum_probs=516.9
Q ss_pred HhhhccccceEEeccCe-EEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhh
Q 002609 117 FSTGYEIVGMHRNVEHR-VDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQ 195 (900)
Q Consensus 117 fa~~~~~~G~~~~~~~~-~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~ 195 (900)
..+-+..+|+|... ++ +..|.|.|+|++|.|+.. . .....+|. ..++.|.|+..||.+ +
T Consensus 23 ~~~p~~~lg~h~~~-~~~~~~r~~~p~a~~v~~~~~--~-~~~~~~~~----~~~~~g~f~~~~~~~------~------ 82 (730)
T PRK12568 23 PADAFAVLGPHPQA-DGRRQVRVLAPGAEAMGLIDG--R-GKLLARMQ----ASPIDGVFEGILPAD------G------ 82 (730)
T ss_pred cCCchHhcCCcCCC-CCcEEEEEECCCCcEEEEEec--C-CccccccE----ecCCCCeEEEecCCC------C------
Confidence 46678899999754 45 689999999999999831 1 12222564 247889999998751 1
Q ss_pred hcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhcccccc
Q 002609 196 QYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQH 275 (900)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 275 (900)
.|++.+.++ +....++|+..-.. +.++++. -.|++-. -+
T Consensus 83 ~y~~~~~~~--~~~~~~~dpy~~~~-----------~~~~~d~------~~~~~g~---------------~~------- 121 (730)
T PRK12568 83 PYRLRIVWP--DVVQEIEDPYAFAP-----------TLDESLL------LQIAAGD---------------GQ------- 121 (730)
T ss_pred CEEEEEEeC--CceEEeeccccccc-----------CCCHHHH------HHHhCCc---------------hh-------
Confidence 255555552 11122222111000 0000000 0111100 01
Q ss_pred cCCCCCCCCeEEe----CCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECC
Q 002609 276 KDDLPSNLPYDVI----DNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTP 350 (900)
Q Consensus 276 ~~~~g~~lpa~~~----~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~ 350 (900)
....-|+|+.. .+||+|+||||+|++|+|+..-..-... ..+|++ .+|+| ++++|++.+|..|+|+|.+.
T Consensus 122 --~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~--~~pM~~~~~GVW-elfipg~~~G~~YKYeI~~~ 196 (730)
T PRK12568 122 --ALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVR--RHPMRQRIGGFW-ELFLPRVEAGARYKYAITAA 196 (730)
T ss_pred --hhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCcc--ceecccCCCCEE-EEEECCCCCCCEEEEEEEcC
Confidence 12234665543 3589999999999999999743221111 345654 67788 99999999999999999988
Q ss_pred CCCe-eecCCcccccccCCCCCCceeEecCCCccccccccCC-----C-CC-CCCCceEEEEecCccCCC--CCCCChhh
Q 002609 351 DGPL-ERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNT-----R-PK-VPKSLRIYECHVGISGSK--PKISSFNE 420 (900)
Q Consensus 351 ~g~~-~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~-----~-p~-~p~~~vIYE~hV~~~~~~--~~~Gt~~g 420 (900)
+|.. ..+||||+++...+.. ..++.++ .+|+|++. + +. .+.+++|||+|||+|+.. ...++|++
T Consensus 197 ~G~~~~k~DPYA~~~e~~p~~---asvV~~~---~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~ 270 (730)
T PRK12568 197 DGRVLLKADPVARQTELPPAT---ASVVPSA---AAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPT 270 (730)
T ss_pred CCeEeecCCCcceEeecCCCC---CeEEcCC---CCCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHH
Confidence 7864 5689999998764422 2233332 24777665 2 22 247899999999999753 34689999
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccc
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMV 500 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~ 500 (900)
+++++|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+. .
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~-~ 349 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-H 349 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc-c
Confidence 999988999999999999999999998889999999999999999999999999999999999999999999999875 4
Q ss_pred ccccCCCCCCccccC-CCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChh
Q 002609 501 GLSQFDGSNDCYFHT-GKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLE 579 (900)
Q Consensus 501 ~l~~fdg~~~~yf~~-~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~ 579 (900)
++..|+|+. .|.+. +..+.+..|++..|||++|+||+||+++++||+++|||||||+|++++|+|.+.+- ..|+
T Consensus 350 ~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r--~~g~-- 424 (730)
T PRK12568 350 GLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGR--AEGE-- 424 (730)
T ss_pred ccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccc--cccc--
Confidence 677898864 34333 34567889999889999999999999999999999999999999999999877432 1222
Q ss_pred hhhhc---ccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCC-C
Q 002609 580 EYCNQ---YVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH-E 655 (900)
Q Consensus 580 ~~~~~---~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~-~ 655 (900)
+.++. ..+.+++.||+.+++.+++.+|++++|||+++.+|.+++|...||+|||++|||+|+++++++++.++.. .
T Consensus 425 w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~ 504 (730)
T PRK12568 425 WVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERA 504 (730)
T ss_pred ccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhh
Confidence 12222 2355789999999999999999999999999999999999999999999999999999999999987764 4
Q ss_pred ccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceee
Q 002609 656 WSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLN 735 (900)
Q Consensus 656 ~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pli 735 (900)
+....+..++.. .+.+. +.+..|||+...|+.++..++.|+.. .+...+ |++.+++++.+| .|||
T Consensus 505 ~~h~~ltf~~~y--~~~e~-fvlp~SHDEvvhgk~sl~~kmpGd~~----------~k~a~l-R~~~~~~~~~PG-kkLl 569 (730)
T PRK12568 505 HHHSQLTFGLVY--AFSER-FVLPLSHDEVVHGTGGLLGQMPGDDW----------RRFANL-RAYLALMWAHPG-DKLL 569 (730)
T ss_pred hhhhhhhhhhhh--hhhcc-EeccCCCcccccCchhhhhcCCCCHH----------HHHHHH-HHHHHHHHhCCC-ccee
Confidence 556777777642 22333 34789999999999998877655421 122233 444567788888 6999
Q ss_pred eccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCccccc------CCceEEeecCCCeE
Q 002609 736 FMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLR------GSPSVHHVNDAKMV 809 (900)
Q Consensus 736 y~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~------g~~~i~~~~~~~~V 809 (900)
|||+|||+.+.++. ...++|.+++.+.++.+.+|+|+|++||+++|+|+. |+.|+...+.+.+|
T Consensus 570 FmG~Efgq~~ew~~----------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv 639 (730)
T PRK12568 570 FMGAEFGQWADWNH----------DQSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSV 639 (730)
T ss_pred eCchhhCCcccccC----------CCCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcE
Confidence 99999999876542 246899999877889999999999999999999963 56788777777889
Q ss_pred EEEEcC-------cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEE
Q 002609 810 ICYMRG-------PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEV 882 (900)
Q Consensus 810 laf~R~-------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l 882 (900)
++|.|. .++||+||++. .+.+|+|++|.+|.|++++|||+..|||.+..+.+. ..+...+++|++++++|
T Consensus 640 ~af~R~~~~~~~~~v~vV~Nft~~-~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~~n~~~--~~~~~~~~~g~~~s~~i 716 (730)
T PRK12568 640 LAFIRHDPDGGGVPLLAVSNLTPQ-PHHDYRVGVPRAGGWREILNTDSAHYGGSNLGNSGR--LATEPTGMHGHAQSLRL 716 (730)
T ss_pred EEEEEecCCCCCCeEEEEECCCCC-CccCeEECCCCCCeEEEEEcCchhhhCCCCcCCCCc--eeecccccCCCccEEEE
Confidence 999993 29999999998 578999999999999999999999999998766544 35666789999999999
Q ss_pred EEcCcEEEEEEEc
Q 002609 883 PLPSRTAQVYKLS 895 (900)
Q Consensus 883 ~LP~rsa~Vl~~~ 895 (900)
+|||.+++||++.
T Consensus 717 ~lppl~~~~~~~~ 729 (730)
T PRK12568 717 TLPPLATIYLQAE 729 (730)
T ss_pred EeCCCEEEEEEEC
Confidence 9999999999975
No 9
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.4e-92 Score=845.49 Aligned_cols=583 Identities=28% Similarity=0.499 Sum_probs=466.7
Q ss_pred hhccccceEEeccC---eEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhh
Q 002609 119 TGYEIVGMHRNVEH---RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQ 195 (900)
Q Consensus 119 ~~~~~~G~~~~~~~---~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~ 195 (900)
+.|+.||+|...++ +|+||+|||+|++|+|+||||+|++..+||. +.+.|+|+++||+
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~-----~~~~Gvw~~~i~~-------------- 82 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLV-----RRESGVWEGFIPG-------------- 82 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCccccccc-----ccCCCEEEEEeCC--------------
Confidence 45999999987654 7999999999999999999999999989985 5577888777543
Q ss_pred hcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhcccccc
Q 002609 196 QYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQH 275 (900)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 275 (900)
T Consensus 83 -------------------------------------------------------------------------------- 82 (633)
T PRK12313 83 -------------------------------------------------------------------------------- 82 (633)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCC-e
Q 002609 276 KDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGP-L 354 (900)
Q Consensus 276 ~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~-~ 354 (900)
+.+|..|+|+|...+|. .
T Consensus 83 -------------------------------------------------------------~~~g~~Y~y~v~~~~g~~~ 101 (633)
T PRK12313 83 -------------------------------------------------------------AKEGQLYKYHISRQDGYQV 101 (633)
T ss_pred -------------------------------------------------------------CCCCCEEEEEEECCCCeEE
Confidence 45678999999776666 4
Q ss_pred eecCCcccccccCCCCCCceeEecCCCccccccccCCC-----CC--CC-CCceEEEEecCccCCC--CCCCChhhHHHh
Q 002609 355 ERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTR-----PK--VP-KSLRIYECHVGISGSK--PKISSFNEFTEK 424 (900)
Q Consensus 355 ~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-----p~--~p-~~~vIYE~hV~~~~~~--~~~Gt~~g~~ek 424 (900)
.+.||||+++...+. ..+++++| ..|.|+++. +. .+ .+++|||+|||+|+.. ++.|||++++++
T Consensus 102 ~~~DPya~~~~~~~~---~~s~v~d~---~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ 175 (633)
T PRK12313 102 EKIDPFAFYFEARPG---TASIVWDL---PEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADE 175 (633)
T ss_pred ecCCCceEEEecCCC---CceEECCC---cccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHH
Confidence 678999999876432 23455665 368898763 11 12 5799999999998753 567999999999
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccccccc
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQ 504 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~ 504 (900)
+|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+. +++..
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~ 254 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAY 254 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccc
Confidence 66999999999999999999998889999999999999999999999999999999999999999999999875 45667
Q ss_pred CCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCcc-ccCCChhhhhh
Q 002609 505 FDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFA-SLTGDLEEYCN 583 (900)
Q Consensus 505 fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~-~~~g~~~~~~~ 583 (900)
|+|++.+++..+..+++..|++.+||+++|+||++|+++++||++||||||||||+|.+|++.+++.. .+.++ ..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~---~~~ 331 (633)
T PRK12313 255 FDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPN---KYG 331 (633)
T ss_pred cCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCc---ccC
Confidence 88765444444445667789999999999999999999999999999999999999999987665411 11111 011
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCC-CccHHHHH
Q 002609 584 QYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH-EWSMSKIV 662 (900)
Q Consensus 584 ~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~-~~~~~~i~ 662 (900)
...+.+++.||+.+++.+++.+|++++|||+++.+|.++.+...+|+|||++|++++++.++++++..+.. .+.+..+.
T Consensus 332 ~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (633)
T PRK12313 332 GRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLT 411 (633)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccch
Confidence 12344678999999999999999999999999999999999999999999999999999999988765432 23333333
Q ss_pred HHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeecccccc
Q 002609 663 STLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFG 742 (900)
Q Consensus 663 ~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG 742 (900)
..+... ..+ ...+.+|||+.+.|+.++..++.+.. . ...+..|++.+++||++| +||||||+|||
T Consensus 412 ~~~~~~--~~e-~~~l~~sHD~~~~g~~~~~~~~~g~~-~----------~~~~~~r~~~~~~~t~pG-~Plif~G~E~g 476 (633)
T PRK12313 412 FSFMYA--FSE-NFVLPFSHDEVVHGKKSLMHKMPGDR-W----------QQFANLRLLYTYMITHPG-KKLLFMGSEFG 476 (633)
T ss_pred HHHhhh--hhc-ccccCCCCcccccCCccHHHhcCCCH-H----------HHHHHHHHHHHHHHhCCC-CcEeecccccc
Confidence 333211 111 22467899999888888888765421 0 123345677778888888 69999999999
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccC------CceEEeecCCCeEEEEEcCc
Q 002609 743 HPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRG------SPSVHHVNDAKMVICYMRGP 816 (900)
Q Consensus 743 ~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g------~~~i~~~~~~~~Vlaf~R~~ 816 (900)
+.+.++ ..++++|++.+.+.++.|++|+|+||+||+++|+|+.+ ..++...+.+++|++|.|..
T Consensus 477 ~~~~~~----------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~ 546 (633)
T PRK12313 477 QFLEWK----------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKG 546 (633)
T ss_pred cCccCC----------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeC
Confidence 976532 12578999877667889999999999999999999743 34444333456799999954
Q ss_pred ------EEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEE
Q 002609 817 ------LVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQ 890 (900)
Q Consensus 817 ------llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~ 890 (900)
++||+|+++. ...+|.|++|.+|+|+++++||+..|||.++.+... +.+....++|+++++.|+|||+|++
T Consensus 547 ~~~~~~llvv~N~s~~-~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~~--~~~~~~~~~g~~~~~~i~ip~~s~~ 623 (633)
T PRK12313 547 KNKGDFLVVVFNFTPV-EREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNGT--VKAQEGPWHGRPQSLTLTLPPLGAL 623 (633)
T ss_pred CCCCceEEEEEeCCCC-cccceeECCCCCCeEEEEEcCCchhcCCCCcCCCCc--eeecccccCCCCCEEEEEeCCCEEE
Confidence 9999999997 467899999989999999999999999998754332 3445557899999999999999999
Q ss_pred EEEEccccc
Q 002609 891 VYKLSRILR 899 (900)
Q Consensus 891 Vl~~~~~~~ 899 (900)
||+++.+++
T Consensus 624 v~~~~~~~~ 632 (633)
T PRK12313 624 VLKPKRRLK 632 (633)
T ss_pred EEEEccccc
Confidence 999988764
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=6.8e-90 Score=820.97 Aligned_cols=519 Identities=29% Similarity=0.508 Sum_probs=405.5
Q ss_pred eCCCCCCCEEEEEEECCCCC-eeecCCcccccccCCCCCCceeEecCCCccccccc-----cCCCC-CCC--CCceEEEE
Q 002609 334 TPGIPHGSKYRVYFNTPDGP-LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKW-----RNTRP-KVP--KSLRIYEC 404 (900)
Q Consensus 334 v~~~~~g~~Y~y~v~~~~g~-~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w-----~~~~p-~~p--~~~vIYE~ 404 (900)
++++.+|..|+|+|+..+|. ..+.||||+++...+.+ .+++.+| ..|.| +..++ ..| .+++|||+
T Consensus 71 i~~~~~g~~Y~y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~---~~~~w~~~~w~~~~~~~~~~~~~~~iYe~ 144 (613)
T TIGR01515 71 IPGIGEGELYKYEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDL---EGYSWQDQKWQEKRKAKTPYEKPVSIYEL 144 (613)
T ss_pred eCCCCCCCEEEEEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECC---ccCccCchhhhhcccccCcccCCceEEEE
Confidence 34456788999999877665 46789999987654322 2344454 23544 44432 233 46899999
Q ss_pred ecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE
Q 002609 405 HVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL 484 (900)
Q Consensus 405 hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~ 484 (900)
|||+|+.. |||+++++++|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+
T Consensus 145 hv~~~~~~---g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 145 HLGSWRHG---LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred ehhhccCC---CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 99999765 999999999569999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEeecccccccccccccccCCCCCCccccC-CCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCccc
Q 002609 485 VFLDIVHSYSAADQMVGLSQFDGSNDCYFHT-GKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSS 563 (900)
Q Consensus 485 VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~-~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~ 563 (900)
||||+|+||++.+. ..+..|++.+ .|++. ...+.++.||+.+||+++|+||+||+++++||++||||||||||+|++
T Consensus 222 VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~ 299 (613)
T TIGR01515 222 VILDWVPGHFPKDD-HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVAS 299 (613)
T ss_pred EEEEecccCcCCcc-chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHH
Confidence 99999999999875 3456777754 34333 334567789999999999999999999999999999999999999999
Q ss_pred chhccCCccccCCChh-hhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHH
Q 002609 564 MIYTHNGFASLTGDLE-EYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASE 642 (900)
Q Consensus 564 m~~~~~g~~~~~g~~~-~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d 642 (900)
|++.+.|... |.+. ...+...+.+++.||+.+++.+++++|++++|||+++.+|.++.+...+|+|||++|+++|..
T Consensus 300 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~ 377 (613)
T TIGR01515 300 MLYLDYSRDE--GEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMH 377 (613)
T ss_pred hhhhcccccc--ccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHH
Confidence 9887654321 1100 011122356789999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHccCCCCC-ccHHHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHH
Q 002609 643 MWLSFLENTPDHE-WSMSKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMI 721 (900)
Q Consensus 643 ~~~~~lk~~~~~~-~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma 721 (900)
.++++++...... .....+...+..+ ..+ ...+++|||+++.|++++..++.+... ...+..|++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e-~~~~~~sHD~~~~g~~~i~~~~~g~~~-----------~~~~~~r~~ 443 (613)
T TIGR01515 378 DTLDYMSTDPVERQYHHQLITFSMLYA--FSE-NFVLPLSHDEVVHGKKSLLNKMPGDYW-----------QKFANYRAL 443 (613)
T ss_pred HHHHHHhhChhhHhhccccccHHHHHH--hhh-ccccCCCCCCcccCcccHHHhCCCchH-----------HHHHHHHHH
Confidence 8888886543211 1111111111111 111 223678999998898888887655310 112345666
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccC-----
Q 002609 722 RLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRG----- 796 (900)
Q Consensus 722 ~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g----- 796 (900)
++++||++| +||||||+|||+.++++ ..+.++|++.+.+.++.+.+|+|+||+||+++|+|+.+
T Consensus 444 ~~~~~t~pG-~plif~G~E~g~~~~~~----------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~ 512 (613)
T TIGR01515 444 LGYMWAHPG-KKLLFMGSEFAQGSEWN----------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQ 512 (613)
T ss_pred HHHHHhCCC-CCEEEcchhcCcCCCCC----------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCC
Confidence 677888888 69999999999976542 13579999877667889999999999999999999754
Q ss_pred -CceEEeecCCCeEEEEEcC------cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeee
Q 002609 797 -SPSVHHVNDAKMVICYMRG------PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTI 869 (900)
Q Consensus 797 -~~~i~~~~~~~~Vlaf~R~------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~ 869 (900)
..++...+.+.+|++|.|. .++||+||++. .+.+|+|++|.+|+|+++++|++..|||.++.+... ..+.
T Consensus 513 ~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~--~~~~ 589 (613)
T TIGR01515 513 GFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP--LSAE 589 (613)
T ss_pred ceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc--eecc
Confidence 3345444456789999994 49999999997 567899999988999999999999999999876543 2445
Q ss_pred eccccCcceeEEEEEcCcEEEEEE
Q 002609 870 SKRVDGLRNCIEVPLPSRTAQVYK 893 (900)
Q Consensus 870 ~~~~~~~~~~~~l~LP~rsa~Vl~ 893 (900)
...+++++++++|+|||++++||+
T Consensus 590 ~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 590 EGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ccccCCCCCEEEEEeCCcEEEEeC
Confidence 557899999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-90 Score=804.35 Aligned_cols=578 Identities=30% Similarity=0.473 Sum_probs=471.0
Q ss_pred hhhccccceEEeccC--eEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhh
Q 002609 118 STGYEIVGMHRNVEH--RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQ 195 (900)
Q Consensus 118 a~~~~~~G~~~~~~~--~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~ 195 (900)
.+-|+++|+|..+.| +++|++|||+|+.|+|+||||+|+...|+|+ .+.++|+|+||||+
T Consensus 20 ~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~----~~~~~G~we~~vp~-------------- 81 (628)
T COG0296 20 LRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMR----DRKESGIWELFVPG-------------- 81 (628)
T ss_pred hhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccc----cCCCCceEEEeccC--------------
Confidence 356999999987665 7999999999999999999999999999998 34588999888654
Q ss_pred hcccccccCCCCCCccHHHHHHhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhcccccc
Q 002609 196 QYNYVDDYDKGDSGVSIQEIFKRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQH 275 (900)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 275 (900)
T Consensus 82 -------------------------------------------------------------------------------- 81 (628)
T COG0296 82 -------------------------------------------------------------------------------- 81 (628)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecCccEEEEEeCCCCCCCEEEEEEECCCCCe-
Q 002609 276 KDDLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTPDGPL- 354 (900)
Q Consensus 276 ~~~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~~- 354 (900)
+..|++|||+|.+++|.+
T Consensus 82 -------------------------------------------------------------~~~G~~Yky~l~~~~g~~~ 100 (628)
T COG0296 82 -------------------------------------------------------------APPGTRYKYELIDPSGQLR 100 (628)
T ss_pred -------------------------------------------------------------CCCCCeEEEEEeCCCCcee
Confidence 456789999999988853
Q ss_pred eecCCcccccccCCCCCCceeEecCCCccccccccCC----CCC--CCCCceEEEEecCccCCCCCCCChhhHHHhhhhH
Q 002609 355 ERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNT----RPK--VPKSLRIYECHVGISGSKPKISSFNEFTEKVLPH 428 (900)
Q Consensus 355 ~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~----~p~--~p~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~y 428 (900)
...||||++....+. .. .+++++ ..|.|++. +.+ ..++++|||+|||+|+.+...|+++..+++ |||
T Consensus 101 ~~~DP~a~~~~~~p~-~a--S~v~~~---~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~~~~e~a~~l-lpY 173 (628)
T COG0296 101 LKADPYARRQEVGPH-TA--SQVVDL---PDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFLGYFELAIEL-LPY 173 (628)
T ss_pred eccCchhhccCCCCC-Cc--ceecCC---CCcccccccccccccCCCCCCceEEEEEeeeccCCCCcCHHHHHHHH-hHH
Confidence 456999998765432 22 344454 24889844 222 236999999999999884223566666665 999
Q ss_pred HHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCC
Q 002609 429 VKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGS 508 (900)
Q Consensus 429 Lk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~ 508 (900)
||+||||||+||||+||+.+.|||||++.||||++|||||++||+|||+||++||.||||+|+||++++. +++..|||+
T Consensus 174 l~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~-~~L~~fdg~ 252 (628)
T COG0296 174 LKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGT 252 (628)
T ss_pred HHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc-chhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999965 789999998
Q ss_pred CCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcc---
Q 002609 509 NDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQY--- 585 (900)
Q Consensus 509 ~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~--- 585 (900)
..+.+....+|.++.||+..+|+++++||+||++|++||+++|||||||+|+|.+|+|.|..... -.+..+.+
T Consensus 253 ~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~----~~~~~n~~ggr 328 (628)
T COG0296 253 FLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAE----GEWVPNEYGGR 328 (628)
T ss_pred cccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhh----hcccccccCCc
Confidence 77777777789999999999999999999999999999999999999999999999988732211 11233332
Q ss_pred cchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCC-CCccHHHHHHH
Q 002609 586 VDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPD-HEWSMSKIVST 664 (900)
Q Consensus 586 ~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~-~~~~~~~i~~~ 664 (900)
.+.++++|++.+++.++...|++++|+|+|+.+|..+.++..+|+||+|++||+++.+...++...+. ..+..+.+..+
T Consensus 329 ~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~ 408 (628)
T COG0296 329 ENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFG 408 (628)
T ss_pred ccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCccc
Confidence 25678999999999999999999999999999999999999999999999999999999999887664 23445555544
Q ss_pred hhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCC
Q 002609 665 LVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHP 744 (900)
Q Consensus 665 l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~ 744 (900)
+. ..++..+.|..||||.+.|++++.++|.+....+. +..+.+++++++.+| +||+|||+|||..
T Consensus 409 ~~---y~~se~~~l~~sHDevvhGk~sl~~rm~g~~~~~~-----------a~lr~~~a~~~~~Pg-k~LLFMG~Efgq~ 473 (628)
T COG0296 409 LL---YAFSENVVLPLSHDEVVHGKRSLGERMPGDAWQKF-----------ANLRALAAYMWLHPG-KPLLFMGEEFGQG 473 (628)
T ss_pred cc---cccceeEeccccccceeecccchhccCCcchhhhH-----------HHHHHHHHHHHhCCC-ceeeecchhhccC
Confidence 32 34678899999999988899999999988654321 122344556666777 6999999999998
Q ss_pred CCCCCCCCCCCCcccccccccccccc--c--cCchHHHHHHHHHHHHHhCccccc------CCceEEeecCCCeEEEEEc
Q 002609 745 KRVEFPMPSNNFSFSLANRHWDLLAN--R--LHSNLYSFDQELMKLDENAKVLLR------GSPSVHHVNDAKMVICYMR 814 (900)
Q Consensus 745 ~~~d~p~~~nn~s~~~~~~~W~~~~~--~--~~~~l~~f~r~Li~LRk~~paL~~------g~~~i~~~~~~~~Vlaf~R 814 (900)
..+.+ -+.++|.+++. + .++.+..|.+.|.++.+..+.+.. +..|+...+....|++|.|
T Consensus 474 ~e~~~----------~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R 543 (628)
T COG0296 474 REWNF----------FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYR 543 (628)
T ss_pred CCCcc----------cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHH
Confidence 76532 35689976664 2 378899999999999888888863 4567766555557999998
Q ss_pred C-------cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCc
Q 002609 815 G-------PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSR 887 (900)
Q Consensus 815 ~-------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~r 887 (900)
. .+++|+|+++. .+.+|.+++|.+|.|+++++||...+||.+..+.... +.++...++++..++.++|||.
T Consensus 544 ~l~~~~~~~lv~~~n~~~~-~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~-~~~~~~~~~~~~~~~~~~lpp~ 621 (628)
T COG0296 544 RLLALRHEHLVVVNNFTPV-PRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNLGLP-VSGEDILWHGREWSLSLTLPPL 621 (628)
T ss_pred HHhhcCCceEEEEeCCCCC-cccccccCCcccccEEEeccchHHHhcCCccccccce-ecceeeeccCcceeeEEecCCc
Confidence 2 47777788886 5789999999889999999999999999987654431 3445555677888999999999
Q ss_pred EEEEEE
Q 002609 888 TAQVYK 893 (900)
Q Consensus 888 sa~Vl~ 893 (900)
+++||+
T Consensus 622 ~~~~l~ 627 (628)
T COG0296 622 AALVLK 627 (628)
T ss_pred eeeEee
Confidence 999986
No 12
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=2.9e-77 Score=733.37 Aligned_cols=616 Identities=19% Similarity=0.276 Sum_probs=434.2
Q ss_pred CCCCCCccHHHHH-HhccCCCCCCCccccccccccccccceeeecCCCCCccccccccCCccccchhcccccccC-CCCC
Q 002609 204 DKGDSGVSIQEIF-KRANDEYWEPGEDRFVKNRFELPAKLYEQLFGPNGPQTLQELEEMPDAQTTYKAWKEQHKD-DLPS 281 (900)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~g~ 281 (900)
|++++.|+|+++. +.. .....++++|+....+|++.|+.....+ ...|+..|+. .+..
T Consensus 258 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~d~~y~y~g 317 (1111)
T TIGR02102 258 DKEGNTVDITDVTIDTD-------KKTVTVKGDFNLDKSPYTVSYNEVSVPT-------------KQSWRLKDEMYAYDG 317 (1111)
T ss_pred ccCCceeecceeeecCC-------cceEEeeccCCcccCCEEEEeccccchh-------------hcchhhhhhhhccCC
Confidence 4555566666544 222 2567788999999889999998776544 4567777766 4566
Q ss_pred CCCeEEeCCc-eEEEEEcCCCCcEEEEeecCCCCC-Cceeeeeee-cCccEEEEEeCC------CCCCCEEEEEEECCCC
Q 002609 282 NLPYDVIDNG-KDYDVFNVASDPRWQEKFRSKEPP-IPYWLETRK-GRKAWLKKYTPG------IPHGSKYRVYFNTPDG 352 (900)
Q Consensus 282 ~lpa~~~~~g-~~F~l~sp~a~~V~l~l~~~~~~~-~~~~~~~~~-~~~vW~~~~v~~------~~~g~~Y~y~v~~~~g 352 (900)
+|+|++.++| ++|+||||+|++|+|+||+..... ....++|.+ .+|+| ++++++ ..+|+.|+|+|+..+.
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW-~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~ 396 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVW-EVQLTKENTGIDSLTGYYYHYEITRGGD 396 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEE-EEEECCcccCcccCCCceEEEEEECCCc
Confidence 8999999888 799999999999999999875432 223567876 56788 999985 3479999999987655
Q ss_pred CeeecCCcccccccCCC------CCCceeEecCCCcc--ccccccCCCC-CCCCCceEEEEecCccCCCC--------CC
Q 002609 353 PLERIPAWATYVQPDAD------GKEAFAIHWEPSPE--FAYKWRNTRP-KVPKSLRIYECHVGISGSKP--------KI 415 (900)
Q Consensus 353 ~~~~~dpya~~~~~~~~------~~~~~~~~~~p~~~--~~~~w~~~~p-~~p~~~vIYE~hV~~~~~~~--------~~ 415 (900)
....+||||+++..... .....++++++... +.++|.+..+ ..++++||||+|||+|+.++ .+
T Consensus 397 ~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~ 476 (1111)
T TIGR02102 397 KVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQF 476 (1111)
T ss_pred eEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCC
Confidence 56788999998764210 01122344454322 3467775333 23589999999999987532 36
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecC------------------CCCCCCCccCCCcccCCCCCC--------HH
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHK------------------DYFTVGYRVTNLYAVSSRYGT--------PD 469 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~------------------~~~~wGY~~~~yfa~~~~yGt--------~~ 469 (900)
|||+||+++ |+|||+|||||||||||+++. ..++|||+|.+||+|+++||+ ++
T Consensus 477 Gtf~gl~ek-LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 477 GTFAAFVEK-LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIA 555 (1111)
T ss_pred cCHHHHHHh-HHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHH
Confidence 999999999 999999999999999999742 123699999999999999998 58
Q ss_pred HHHHHHHHHhhcCcEEEEeecccccccccccccccCCCC-CCccccCCCCCc-cCCCCCccccCCCHHHHHHHHHHHHHH
Q 002609 470 DFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGS-NDCYFHTGKRGF-HKYWGTRMFKYDDLDVLHFLLSNLNWW 547 (900)
Q Consensus 470 elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~-~~~yf~~~~~g~-~~~wg~~~ln~~~~~vr~~lld~l~~W 547 (900)
|||+||++||++||+||||||+||++..+ .|++. +.+|++.+..|. .+.|+++.+|.++++||++|+++++||
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yW 630 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYL 630 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 46664 444444444443 356777899999999999999999999
Q ss_pred HHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccc-c--
Q 002609 548 VVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCE-P-- 624 (900)
Q Consensus 548 l~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~-~-- 624 (900)
++||||||||||+|.++ ...++..+...+++++|++++|||.|..+.+-.. +
T Consensus 631 v~ey~VDGFRfDl~g~~-------------------------d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~~~~~~ 685 (1111)
T TIGR02102 631 VDEFKVDGFRFDMMGDH-------------------------DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDEGDPVQ 685 (1111)
T ss_pred HHhcCCcEEEEeccccC-------------------------CHHHHHHHHHHHHHhCcCEEEEEecccccCCCCccccc
Confidence 99999999999987642 1235677778889999999999999985321110 1
Q ss_pred -ccCCCCCccccccchhHHHHHHHHccCCC----------CCccHHHHHHHhhcC-----CCCccceEeccccccccccC
Q 002609 625 -TTQGGLGFDYFLNLSASEMWLSFLENTPD----------HEWSMSKIVSTLVGN-----GQYSDKMIMYAENHNQSISG 688 (900)
Q Consensus 625 -~~~gg~GFD~~~n~~~~d~~~~~lk~~~~----------~~~~~~~i~~~l~~~-----~~~~~~~v~Y~enHD~~~~G 688 (900)
.......+.. ....|.+.+++++++... ....+..+...+.++ ...+.++|+|++|||+.
T Consensus 686 ~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~~~~P~~~VnYV~aHDn~--- 761 (1111)
T TIGR02102 686 AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAAHDNL--- 761 (1111)
T ss_pred ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccccCCcccEEEEEecCCCC---
Confidence 0000111110 012355677777775321 123355666666543 24678999999999996
Q ss_pred CCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCC-------------------
Q 002609 689 GRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEF------------------- 749 (900)
Q Consensus 689 ~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~------------------- 749 (900)
||.+.+.-+.. ......+.-....++.||+.+++|+++| +||||+||||++++.++.
T Consensus 762 --TL~D~l~~~~~-~~~~~~e~~~~~~~r~rla~~llllSQG-iPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~ 837 (1111)
T TIGR02102 762 --TLHDVIAQSIK-KDPKVAENQEEIHRRIRLGNLMVLTSQG-TAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLM 837 (1111)
T ss_pred --chHhhhhhccc-cCcccccchHHHHHHHHHHHHHHHHhCc-HhhhhcchhhhcccCCCcccccccccccccccccccc
Confidence 46665542211 1110000000123456788888888888 699999999999998751
Q ss_pred -------------CCCCCCCccccccccccccccc----cCchHHHHHHHHHHHHHhCcccccCC-----ceEEeecC--
Q 002609 750 -------------PMPSNNFSFSLANRHWDLLANR----LHSNLYSFDQELMKLDENAKVLLRGS-----PSVHHVND-- 805 (900)
Q Consensus 750 -------------p~~~nn~s~~~~~~~W~~~~~~----~~~~l~~f~r~Li~LRk~~paL~~g~-----~~i~~~~~-- 805 (900)
-+++++++...|+++|++..+. .+..+++|+|.||+|||+||+|+.+. ..+.+.+.
T Consensus 838 ~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g 917 (1111)
T TIGR02102 838 TDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPG 917 (1111)
T ss_pred cccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCCC
Confidence 1566777788999999987532 23589999999999999999998653 23333222
Q ss_pred ------CCeEEEEEc-----CcEEEEEeCCCCCcccceEEeccCC----CeEEEEecCCCcccCCcccccccccceeeee
Q 002609 806 ------AKMVICYMR-----GPLVFIFNFHPTDSYEDYSVGVEEA----GEYQIILNTDESKFGGQGLIKEHQYLQRTIS 870 (900)
Q Consensus 806 ------~~~Vlaf~R-----~~llvV~Nf~~~~s~~~~~i~lp~~----G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~ 870 (900)
.+.|++|.. +.++|++|.+.+. .++.+|.. ..|.++++.... |...+.. .
T Consensus 918 ~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~~----~~~~lp~~~~~~~~~~v~~~~~~~---g~~~~~~--------~ 982 (1111)
T TIGR02102 918 QNEIEEEDLVVAYQIVATNGDIYAVFVNADDKA----RTLTLGEDYAHLTVGEVVVDAEQA---GVTGIAE--------P 982 (1111)
T ss_pred CcccccCCcEEEEEEecCCCCeEEEEECCCCCC----EEEECCCCcccccceEEEEccccc---Ccccccc--------c
Confidence 257899986 3689999998873 35677642 379999886543 2111110 0
Q ss_pred ccccCcceeEEEEEcCcEEEEEEEcc
Q 002609 871 KRVDGLRNCIEVPLPSRTAQVYKLSR 896 (900)
Q Consensus 871 ~~~~~~~~~~~l~LP~rsa~Vl~~~~ 896 (900)
..+.- ..-.|+|||+|++||+...
T Consensus 983 ~~~~~--~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 983 KGVEL--TAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred ccccc--cCCeEEEcCcEEEEEEecc
Confidence 00000 1236899999999998763
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=5.9e-76 Score=704.23 Aligned_cols=546 Identities=21% Similarity=0.344 Sum_probs=393.9
Q ss_pred CCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECC----CC----
Q 002609 282 NLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTP----DG---- 352 (900)
Q Consensus 282 ~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~----~g---- 352 (900)
+|+|+++++||+|+||||+|++|+|+||+.........++|.+ .+|+| +++++++.+|..|+|+|+++ .|
T Consensus 6 ~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~~~~~~~~~m~~~~~gvW-~~~v~~~~~g~~Y~yrv~g~~~~~~g~~f~ 84 (688)
T TIGR02100 6 PLGATWDGQGVNFALFSANAEKVELCLFDAQGEKEEARLPLPERTDDIW-HGYLPGAQPGQLYGYRVHGPYDPENGHRFN 84 (688)
T ss_pred CCCeEEeCCcEEEEEECCCCCEEEEEEEcCCCCceeeEEecccCCCCEE-EEEECCCCCCCEEEEEEeeeeCCCCCcccC
Confidence 3559999999999999999999999999864433333566765 56788 99999999999999999863 23
Q ss_pred -CeeecCCcccccccCCC------C-------------------CCceeEecCCCccccccccCC--CCCCC-CCceEEE
Q 002609 353 -PLERIPAWATYVQPDAD------G-------------------KEAFAIHWEPSPEFAYKWRNT--RPKVP-KSLRIYE 403 (900)
Q Consensus 353 -~~~~~dpya~~~~~~~~------~-------------------~~~~~~~~~p~~~~~~~w~~~--~p~~p-~~~vIYE 403 (900)
..+.+||||+.+..+.. + ....+++.++ +|.|+++ +|..+ +++||||
T Consensus 85 ~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~~~d~iIYE 160 (688)
T TIGR02100 85 PNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTPWEDTIIYE 160 (688)
T ss_pred cCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCCccccEEEE
Confidence 13578999999875421 0 0012333332 4899876 34444 7999999
Q ss_pred EecCccCCC------CCCCChhhHHHh-hhhHHHHcCcceEEEeeeeecCCC---------CCCCCccCCCcccCCCC--
Q 002609 404 CHVGISGSK------PKISSFNEFTEK-VLPHVKEAGYNVIQLFGVVEHKDY---------FTVGYRVTNLYAVSSRY-- 465 (900)
Q Consensus 404 ~hV~~~~~~------~~~Gt~~g~~ek-~L~yLk~LGvn~I~LmPv~e~~~~---------~~wGY~~~~yfa~~~~y-- 465 (900)
+||+.|+.. ..+|||+|++++ .|||||+||||+||||||+++... ++|||+|.+||+|+++|
T Consensus 161 ~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~ 240 (688)
T TIGR02100 161 AHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLA 240 (688)
T ss_pred EEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcC
Confidence 999988752 347999999985 599999999999999999998753 47999999999999999
Q ss_pred -CCHHHHHHHHHHHhhcCcEEEEeeccccccccccccc-ccCCC-CCCccccCCCC--C-ccCCCCC-ccccCCCHHHHH
Q 002609 466 -GTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL-SQFDG-SNDCYFHTGKR--G-FHKYWGT-RMFKYDDLDVLH 538 (900)
Q Consensus 466 -Gt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l-~~fdg-~~~~yf~~~~~--g-~~~~wg~-~~ln~~~~~vr~ 538 (900)
|+++|||+||++||++||+||||||+||++..+..+. ..|.| .+..||+.... + +.+.++| ++||+++|+||+
T Consensus 241 ~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~ 320 (688)
T TIGR02100 241 SGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQ 320 (688)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHH
Confidence 5799999999999999999999999999998764432 24555 34466665432 3 4456677 899999999999
Q ss_pred HHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 002609 539 FLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYY 618 (900)
Q Consensus 539 ~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~ 618 (900)
+|+++++||++||||||||||+|..|.+...++. ....+++.++. ..+.|++++|||.|...
T Consensus 321 ~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~----------------~~~~~~~~i~~--d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 321 MVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFD----------------MLSGFFTAIRQ--DPVLAQVKLIAEPWDIG 382 (688)
T ss_pred HHHHHHHHHHHHcCCcEEEEechhhhccccCCCc----------------ccHHHHHHHHh--CcccCCeEEEEeeecCC
Confidence 9999999999999999999999998754322221 01234555543 24678999999999743
Q ss_pred CCccccccCCCCCcc---ccccchhHHHHHHHHccCCCCCccHHHHHHHhhcC-------CCCccceEeccccccccccC
Q 002609 619 PGLCEPTTQGGLGFD---YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGN-------GQYSDKMIMYAENHNQSISG 688 (900)
Q Consensus 619 p~l~~~~~~gg~GFD---~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~-------~~~~~~~v~Y~enHD~~~~G 688 (900)
++.. .. ..|+ ..||..+.+.++.++++... ....+...+.+. ...+..+|+|++|||+.+
T Consensus 383 ~~~~---~~--~~~~~~~~~~Nd~frd~ir~f~~g~~~---~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~t-- 452 (688)
T TIGR02100 383 PGGY---QV--GNFPPGWAEWNDRYRDDMRRFWRGDAG---MIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGFT-- 452 (688)
T ss_pred CCcc---cc--cCCCCceEEecHHHHHHHHHHHcCCCC---cHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCch--
Confidence 3211 11 1344 56888999999999987543 456677776542 235678999999999964
Q ss_pred CCchhhhhcc---------c------ccCCCCCch-------hhhh-hhhHHHHHHHHHHHHhCCCceeeeccccccCCC
Q 002609 689 GRSFAEILFG---------E------ISEHSPDTN-------NLLL-RGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPK 745 (900)
Q Consensus 689 ~~tl~~~l~~---------~------~~~~~~~~~-------~~~~-r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~ 745 (900)
+.+.+.- . ..+.+.++. ..+. ...++.|++.+++|+++| +||||||||||+++
T Consensus 453 ---l~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~G-iP~i~~GdE~g~t~ 528 (688)
T TIGR02100 453 ---LRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQG-TPMLLAGDEFGRTQ 528 (688)
T ss_pred ---HHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CceeeecHhhccCC
Confidence 4443211 0 011112221 0111 123445667778888888 69999999999998
Q ss_pred CCCCCCCCCCCccc----cccccccccccccCchHHHHHHHHHHHHHhCcccccCC-----------ceEEeec------
Q 002609 746 RVEFPMPSNNFSFS----LANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGS-----------PSVHHVN------ 804 (900)
Q Consensus 746 ~~d~p~~~nn~s~~----~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~-----------~~i~~~~------ 804 (900)
. |++++|. +++++|++.+ .+++|++|+|+||+|||+||+|+.+. ..+.+..
T Consensus 529 ~------G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~ 600 (688)
T TIGR02100 529 Q------GNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPM 600 (688)
T ss_pred C------CCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcC
Confidence 6 4455553 5789999765 67899999999999999999998652 2344422
Q ss_pred -------CCCeEEEEEcC------------cEEEEEeCCCCCcccceEEeccCC-CeEEEEecCCCcccCCccccccccc
Q 002609 805 -------DAKMVICYMRG------------PLVFIFNFHPTDSYEDYSVGVEEA-GEYQIILNTDESKFGGQGLIKEHQY 864 (900)
Q Consensus 805 -------~~~~Vlaf~R~------------~llvV~Nf~~~~s~~~~~i~lp~~-G~w~~vl~sd~~~~gG~g~~~~~~~ 864 (900)
....+|+|... .++|++|.+.+. ..+.+|.. ..|+.+++|.... ... +.
T Consensus 601 ~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~----~~~~lP~~~~~w~~~~dt~~~~--~~~-~~---- 669 (688)
T TIGR02100 601 TEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEP----VPFKLPGGGGRWELVLDTADEE--APG-IH---- 669 (688)
T ss_pred ChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCC----eEEECCCCCCcEEEEecCCCCC--Ccc-cc----
Confidence 13478888762 489999999873 35666643 4899999986421 110 00
Q ss_pred ceeeeeccccCcceeEEEEEcCcEEEEEEE
Q 002609 865 LQRTISKRVDGLRNCIEVPLPSRTAQVYKL 894 (900)
Q Consensus 865 ~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~ 894 (900)
.. ....+.||++|++||++
T Consensus 670 -------~~----~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 670 -------LD----AGQEAELPARSVLLLRR 688 (688)
T ss_pred -------cc----CCCEEEEcCCEEEEEeC
Confidence 00 12468899999999974
No 14
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=4.4e-75 Score=693.96 Aligned_cols=520 Identities=18% Similarity=0.235 Sum_probs=380.7
Q ss_pred CCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCC-Cceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECCCCCeee
Q 002609 279 LPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPP-IPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTPDGPLER 356 (900)
Q Consensus 279 ~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~-~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~~~~ 356 (900)
+..+|+|++.++|++|+||||+|++|+|++|++.... ....++|.+ .+|+| ++.++++.+|+.|+|+|+..++....
T Consensus 8 ~~~~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~~~~~~~~~~m~~~~~gvw-~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 8 YDGELGAVYTPEKTVFRVWAPTATEVELLLYKSGEDGEPYKVVKMKRGENGVW-SAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred CCCCCccEEECCeeEEEEECCCCCEEEEEEEcCCCCCccceEEecccCCCCEE-EEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 3348999999999999999999999999999864322 123467776 46788 99999999999999999875444568
Q ss_pred cCCcccccccCCCCCCceeEecCCCccccccccCCC-CC--CCCCceEEEEecCccCCCC-----CCCChhhHHHh----
Q 002609 357 IPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTR-PK--VPKSLRIYECHVGISGSKP-----KISSFNEFTEK---- 424 (900)
Q Consensus 357 ~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-p~--~p~~~vIYE~hV~~~~~~~-----~~Gt~~g~~ek---- 424 (900)
+||||+++..++ .. .+++++....++.|.+++ +. .++++||||+|||.|+..+ .+|||++++++
T Consensus 87 ~DPya~~~~~~~--~~--s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~ 162 (605)
T TIGR02104 87 VDPYAKAVTVNG--KR--GAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKG 162 (605)
T ss_pred cCCCcceeccCC--Cc--EEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccc
Confidence 999999987642 22 233455333467898775 32 3578999999999987533 36999998875
Q ss_pred ------hhhHHHHcCcceEEEeeeeecCCC--------CCCCCccCCCcccCCCCCC--------HHHHHHHHHHHhhcC
Q 002609 425 ------VLPHVKEAGYNVIQLFGVVEHKDY--------FTVGYRVTNLYAVSSRYGT--------PDDFKRLVDEAHGLG 482 (900)
Q Consensus 425 ------~L~yLk~LGvn~I~LmPv~e~~~~--------~~wGY~~~~yfa~~~~yGt--------~~elk~LV~~aH~~G 482 (900)
.|||||+||||+||||||+++++. .+|||++++||+|+++||+ ++|||+||++||++|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 499999999999999999998752 4699999999999999997 589999999999999
Q ss_pred cEEEEeecccccccccccccccCCCC-CCccccCCCCC-ccCCCCC-ccccCCCHHHHHHHHHHHHHHHHhcCccEEEec
Q 002609 483 LLVFLDIVHSYSAADQMVGLSQFDGS-NDCYFHTGKRG-FHKYWGT-RMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFH 559 (900)
Q Consensus 483 I~VILDvV~NH~~~~~~~~l~~fdg~-~~~yf~~~~~g-~~~~wg~-~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD 559 (900)
|+||||||+||++... ...|++. +.+||+.+..+ ..+.|+| +++|+++|+||++|+++++||++||||||||||
T Consensus 243 i~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D 319 (605)
T TIGR02104 243 IRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319 (605)
T ss_pred CEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999998643 2357664 44555544444 3355666 789999999999999999999999999999999
Q ss_pred CcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCcccccc-----CCCCCccc
Q 002609 560 SLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTT-----QGGLGFDY 634 (900)
Q Consensus 560 ~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~-----~gg~GFD~ 634 (900)
++.++ ...+|+.++..+++.+|++++|||.|...+.+..... ..+++-..
T Consensus 320 ~~~~~-------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~ 374 (605)
T TIGR02104 320 LMGIH-------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIA 374 (605)
T ss_pred chhcC-------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCCCCceE
Confidence 88654 1347889999999999999999999986554432100 01111123
Q ss_pred cccchhHHHHHHHHccCCC------CCccHHHHHHHhhcC---------CCCccceEeccccccccccCCCchhhhhccc
Q 002609 635 FLNLSASEMWLSFLENTPD------HEWSMSKIVSTLVGN---------GQYSDKMIMYAENHNQSISGGRSFAEILFGE 699 (900)
Q Consensus 635 ~~n~~~~d~~~~~lk~~~~------~~~~~~~i~~~l~~~---------~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~ 699 (900)
.+|..+.+.++...-.... .......+...+.+. ...+..+|+|++|||+.+ +.+++...
T Consensus 375 ~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~-----l~d~l~~~ 449 (605)
T TIGR02104 375 FFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHT-----LWDKLSLA 449 (605)
T ss_pred EECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCC-----HHHHHHhh
Confidence 4666666655422211111 112344555555432 235678999999999874 44443221
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHH
Q 002609 700 ISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSF 779 (900)
Q Consensus 700 ~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f 779 (900)
.. ..+ .....++.|++.+++|+++| +||||||||||+++.++ ..+++.+..+++++|+..+ .+..+++|
T Consensus 450 ~~--~~~----~~~~~~r~rla~alllts~G-iP~iy~GdE~g~s~~g~--~n~y~~~d~~~~ldW~~~~--~~~~~~~~ 518 (605)
T TIGR02104 450 NP--DET----EEQLKKRQKLATAILLLSQG-IPFLHAGQEFMRTKQGD--ENSYNSPDSINQLDWDRKA--TFKDDVNY 518 (605)
T ss_pred CC--CCC----HHHHHHHHHHHHHHHHHcCC-CceeecchhhhccCCCC--CCCccCCCcccccCccccc--cchHHHHH
Confidence 10 000 11223456778888898888 69999999999997542 1233344457789998754 46789999
Q ss_pred HHHHHHHHHhCcccccCCce-----EEeec-CCCeEEEEEcC---------cEEEEEeCCCCCcccceEEeccCCCeEEE
Q 002609 780 DQELMKLDENAKVLLRGSPS-----VHHVN-DAKMVICYMRG---------PLVFIFNFHPTDSYEDYSVGVEEAGEYQI 844 (900)
Q Consensus 780 ~r~Li~LRk~~paL~~g~~~-----i~~~~-~~~~Vlaf~R~---------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~ 844 (900)
+|+||+|||++|+|+.+... +.... .++.|++|.|. .++||+|++.+. +++.+|..|.|+.
T Consensus 519 ~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~----~~v~lp~~~~w~~ 594 (605)
T TIGR02104 519 IKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEP----VDIQLPSDGTWNV 594 (605)
T ss_pred HHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCC----eEEECCCCCCEEE
Confidence 99999999999999987532 11122 35679999993 389999999763 4677877789999
Q ss_pred EecCCCc
Q 002609 845 ILNTDES 851 (900)
Q Consensus 845 vl~sd~~ 851 (900)
+++++..
T Consensus 595 ~~~~~~~ 601 (605)
T TIGR02104 595 VVDNKNA 601 (605)
T ss_pred EECCCcC
Confidence 9998653
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=9.4e-74 Score=680.60 Aligned_cols=539 Identities=19% Similarity=0.284 Sum_probs=381.5
Q ss_pred CCCCCC--eEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECCC----
Q 002609 279 LPSNLP--YDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTPD---- 351 (900)
Q Consensus 279 ~g~~lp--a~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~~---- 351 (900)
+|.++| |+++++|++|+||||+|++|+|+||++.+... .++|.+ .+|+| +++++++.+|+.|+|+|+++.
T Consensus 6 ~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~~~--~~~m~~~~~gvW-~~~v~~~~~G~~Y~yrv~g~~~p~~ 82 (658)
T PRK03705 6 IGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENGQEQ--RYDLPARSGDIW-HGYLPGARPGLRYGYRVHGPWQPAQ 82 (658)
T ss_pred CCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCCCee--eEeeeeccCCEE-EEEECCCCCCCEEEEEEccccCccc
Confidence 455555 99999999999999999999999998753322 356655 57899 999999999999999998641
Q ss_pred C-----CeeecCCcccccccCCC-------------CCC-----ceeEecCCCccccccccCCCC-CCC-CCceEEEEec
Q 002609 352 G-----PLERIPAWATYVQPDAD-------------GKE-----AFAIHWEPSPEFAYKWRNTRP-KVP-KSLRIYECHV 406 (900)
Q Consensus 352 g-----~~~~~dpya~~~~~~~~-------------~~~-----~~~~~~~p~~~~~~~w~~~~p-~~p-~~~vIYE~hV 406 (900)
| ....+||||+++..... ... ...++.+ .+|+|+++.+ ..| +++||||+||
T Consensus 83 g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d----~~~~W~~~~~p~~~~~~~vIYE~hv 158 (658)
T PRK03705 83 GHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD----DHYDWEDDAPPRTPWGSTVIYEAHV 158 (658)
T ss_pred CcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec----CCCCCCCCCCCCCCccccEEEEEeh
Confidence 2 23468999999875311 000 1122222 3689998753 334 7999999999
Q ss_pred CccCC-C-----CCCCChhhHHHh-hhhHHHHcCcceEEEeeeeecCCC---------CCCCCccCCCcccCCCCCCH--
Q 002609 407 GISGS-K-----PKISSFNEFTEK-VLPHVKEAGYNVIQLFGVVEHKDY---------FTVGYRVTNLYAVSSRYGTP-- 468 (900)
Q Consensus 407 ~~~~~-~-----~~~Gt~~g~~ek-~L~yLk~LGvn~I~LmPv~e~~~~---------~~wGY~~~~yfa~~~~yGt~-- 468 (900)
|.|+. + ..+|||++++++ .|||||+||||+||||||+++... ++|||+|.+||+|+++|||.
T Consensus 159 r~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~ 238 (658)
T PRK03705 159 RGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPE 238 (658)
T ss_pred hhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCc
Confidence 98874 2 247999999973 499999999999999999998653 57999999999999999984
Q ss_pred ---HHHHHHHHHHhhcCcEEEEeeccccccccccccc-ccCCC-CCCccccCCCCCccCCC-CC-ccccCCCHHHHHHHH
Q 002609 469 ---DDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL-SQFDG-SNDCYFHTGKRGFHKYW-GT-RMFKYDDLDVLHFLL 541 (900)
Q Consensus 469 ---~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l-~~fdg-~~~~yf~~~~~g~~~~w-g~-~~ln~~~~~vr~~ll 541 (900)
+|||+||++||++||+||||||+||++.....+. ..+++ .+.+||+....+....| +| ++||+++|+|+++|+
T Consensus 239 ~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ii 318 (658)
T PRK03705 239 TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAI 318 (658)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHH
Confidence 7999999999999999999999999997543332 23555 34556655555544444 56 899999999999999
Q ss_pred HHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCc
Q 002609 542 SNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGL 621 (900)
Q Consensus 542 d~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l 621 (900)
++++||++||||||||||+|.+|... .++. .. ..+++.+.. ..+.|++++|||.|...++.
T Consensus 319 d~l~~W~~e~gVDGFRfD~a~~l~~~-~~~~---------------~~-~~~~~ai~~--d~vl~~~~ligE~Wd~~~~~ 379 (658)
T PRK03705 319 DCLRYWVETCHVDGFRFDLATVLGRT-PEFR---------------QD-APLFTAIQN--DPVLSQVKLIAEPWDIGPGG 379 (658)
T ss_pred HHHHHHHHHhCCCEEEEEcHhhhCcC-cccc---------------hh-hHHHHHHhh--CccccceEEEEecccCCCCh
Confidence 99999999999999999999987432 1111 01 112333321 24667999999999854322
Q ss_pred cccccCCCCCcc---ccccchhHHHHHHHHccCCCCCccHHHHHHHhhcC-------CCCccceEeccccccccccCCCc
Q 002609 622 CEPTTQGGLGFD---YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGN-------GQYSDKMIMYAENHNQSISGGRS 691 (900)
Q Consensus 622 ~~~~~~gg~GFD---~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~-------~~~~~~~v~Y~enHD~~~~G~~t 691 (900)
.. .+ .|+ ..||..+.+.++.++++... .+..+...+.+. .+.+..+|+|+++||+. |
T Consensus 380 ~~---~g--~~~~~~~~~Nd~fRd~ir~f~~~~~~---~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~-----T 446 (658)
T PRK03705 380 YQ---VG--NFPPPFAEWNDHFRDAARRFWLHGDL---PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGF-----T 446 (658)
T ss_pred hh---hc--CCCcceEEEchHHHHHHHHHHccCCC---cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCc-----c
Confidence 11 11 222 36788888888888876433 345555555432 34688999999999985 3
Q ss_pred hhhhhccc---------------ccCCCCCchh-------hh-hhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCC
Q 002609 692 FAEILFGE---------------ISEHSPDTNN-------LL-LRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVE 748 (900)
Q Consensus 692 l~~~l~~~---------------~~~~~~~~~~-------~~-~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d 748 (900)
+.+.+.-. ..+.+.++.. .+ ....+..|++.+++|+++| +||||+|||||+++.+
T Consensus 447 L~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG-~P~i~~GdE~grtq~G- 524 (658)
T PRK03705 447 LRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQG-TPMLLAGDEHGHSQHG- 524 (658)
T ss_pred HHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCC-chHHHhhHHhccCCCC-
Confidence 44433110 0111122211 11 1122345666777788888 6999999999999874
Q ss_pred CCCCCCCCcc----ccccccccccccccCchHHHHHHHHHHHHHhCcccccCCc------eEEeecC------------C
Q 002609 749 FPMPSNNFSF----SLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSP------SVHHVND------------A 806 (900)
Q Consensus 749 ~p~~~nn~s~----~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~------~i~~~~~------------~ 806 (900)
|+++| ..++++|+.. .+++++|+|+||+|||+||+|+.... .+.+... .
T Consensus 525 -----~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~ 595 (658)
T PRK03705 525 -----NNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQG 595 (658)
T ss_pred -----CCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCc
Confidence 45555 3578999864 36899999999999999999975322 2333221 1
Q ss_pred CeEEEEEc-CcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEc
Q 002609 807 KMVICYMR-GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLP 885 (900)
Q Consensus 807 ~~Vlaf~R-~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP 885 (900)
..+++|.. +.++|++|.+.+. ..+.+|. ++|+++++++.. +.. +. ...+.+|
T Consensus 596 ~~~~~~~~~~~~~v~~N~~~~~----~~~~lp~-~~w~~~~~~~~~---~~~---------------~~----~~~~~~~ 648 (658)
T PRK03705 596 PKQLQILLSDRWLIAINATLEV----TEIVLPE-GEWHAIPPFAGE---DNP---------------VI----TAVWHGP 648 (658)
T ss_pred ceEEEEEECCCEEEEECCCCCC----eEEECCC-cceEEEEccCCC---ccc---------------cc----Cceeeec
Confidence 45667765 5799999999763 3677775 799999654431 100 11 2346689
Q ss_pred CcEEEEEEE
Q 002609 886 SRTAQVYKL 894 (900)
Q Consensus 886 ~rsa~Vl~~ 894 (900)
++|++||..
T Consensus 649 ~~~~~~~~~ 657 (658)
T PRK03705 649 AHGVCVFQR 657 (658)
T ss_pred CcEEEEEec
Confidence 999999864
No 16
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.4e-73 Score=670.98 Aligned_cols=468 Identities=23% Similarity=0.352 Sum_probs=371.6
Q ss_pred eEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecC-ccEEEEEeCCCCCCCEEEEEEECCCCCeeecCCcccccccCCCC
Q 002609 292 KDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGR-KAWLKKYTPGIPHGSKYRVYFNTPDGPLERIPAWATYVQPDADG 370 (900)
Q Consensus 292 ~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~-~vW~~~~v~~~~~g~~Y~y~v~~~~g~~~~~dpya~~~~~~~~~ 370 (900)
|+|+||||+|++|+|+++.. .++|.+.. |+| +++++++.+|+.|+|+|+ |....+||||++.....++
T Consensus 1 v~FrlwAP~A~~V~L~l~~~-------~~~m~k~~~GvW-~~~v~~~~~G~~Y~y~v~---g~~~v~DPya~~~~~~~~~ 69 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNGA-------LHAMQRLGDGWF-EITVPPVGPGDRYGYVLD---DGTPVPDPASRRQPDGVHG 69 (542)
T ss_pred CEEEEECCCCCEEEEEeCCC-------EEeCeECCCCEE-EEEECCCCCCCEEEEEEe---eeEEecCccccccccCCCC
Confidence 58999999999999998531 46787754 556 999999999999999996 3456789999986433222
Q ss_pred CCceeEecCCCccccccccCCCC-CC-CCCceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCC
Q 002609 371 KEAFAIHWEPSPEFAYKWRNTRP-KV-PKSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY 448 (900)
Q Consensus 371 ~~~~~~~~~p~~~~~~~w~~~~p-~~-p~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~ 448 (900)
.+++++| ..|+|+++.+ .. .+++||||+|||+|+. .|||+|++++ |||||+||||+||||||++++..
T Consensus 70 ---~S~V~d~---~~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LGv~~i~L~Pi~~~~~~ 139 (542)
T TIGR02402 70 ---PSQVVDP---DRYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLGITAIELMPVAQFPGT 139 (542)
T ss_pred ---CeEEecC---cccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcCCCEEEeCccccCCCC
Confidence 2444565 3589998754 23 4799999999999986 4999999999 99999999999999999999988
Q ss_pred CCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCcc
Q 002609 449 FTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRM 528 (900)
Q Consensus 449 ~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ 528 (900)
.+|||++++||+|+++|||++|||+||++||++||+||||||+||++.++. .+..|. + ||.. ...+.|| +.
T Consensus 140 ~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~-~~~~~~---~-y~~~---~~~~~wg-~~ 210 (542)
T TIGR02402 140 RGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGN-YLPRYA---P-YFTD---RYSTPWG-AA 210 (542)
T ss_pred CCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCccc-cccccC---c-cccC---CCCCCCC-Cc
Confidence 899999999999999999999999999999999999999999999997652 222332 2 5643 2346676 47
Q ss_pred ccCCCH---HHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcC
Q 002609 529 FKYDDL---DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALH 605 (900)
Q Consensus 529 ln~~~~---~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~ 605 (900)
+|++++ +||++|+++++||++||||||||||++..|.. .+.+.||+++++.+++++
T Consensus 211 ~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~---------------------~~~~~~l~~~~~~~~~~~ 269 (542)
T TIGR02402 211 INFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD---------------------TSAKHILEELAREVHELA 269 (542)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc---------------------ccHHHHHHHHHHHHHHHC
Confidence 899999 99999999999999999999999999887631 235678999999999999
Q ss_pred CC---EEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCC-----CccHHHHHHHhhcC---------
Q 002609 606 PN---IITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDH-----EWSMSKIVSTLVGN--------- 668 (900)
Q Consensus 606 P~---~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~-----~~~~~~i~~~l~~~--------- 668 (900)
|+ +++|||.+...+.++.+...+|.|||+.||..+.+.+..++.+.... ..+...+...+...
T Consensus 270 p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~ 349 (542)
T TIGR02402 270 AELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSP 349 (542)
T ss_pred CCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccc
Confidence 99 99999999878887777777889999999998888888777653211 00334444443211
Q ss_pred -----------CCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeec
Q 002609 669 -----------GQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFM 737 (900)
Q Consensus 669 -----------~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~ 737 (900)
...+.++++|++|||+ +|+.++.+++.... ..++.|++.+++||++| +|||||
T Consensus 350 ~~~~~~~~~~~~~~~~~~vnfl~nHD~--~gn~~~~~Rl~~~~-------------~~~~~~la~alllt~pG-iP~Iy~ 413 (542)
T TIGR02402 350 FRGRPHGRPSGDLPPHRFVVFIQNHDQ--IGNRALGERLSQLL-------------SPGSLKLAAALLLLSPY-TPLLFM 413 (542)
T ss_pred cccccCCCCCCCCCHHHEEEEccCccc--ccccchhhhhhhcC-------------CHHHHHHHHHHHHHcCC-Cceeec
Confidence 0134578999999998 56777777765421 11457888899999999 699999
Q ss_pred cccccCCCCC-------------------------------CCCCCCCCCccccccccccccccccCchHHHHHHHHHHH
Q 002609 738 GNEFGHPKRV-------------------------------EFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKL 786 (900)
Q Consensus 738 G~EfG~~~~~-------------------------------d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~L 786 (900)
|||||+++.. ..|+|...++|.+++++|+..+...+.++++|+|+||+|
T Consensus 414 GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~l 493 (542)
T TIGR02402 414 GEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLAL 493 (542)
T ss_pred cHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHH
Confidence 9999998863 135666777888999999988655678999999999999
Q ss_pred HHhCcccccCCceE-Ee-ecCCCeEEEEEc--CcEEEEEeCCCC
Q 002609 787 DENAKVLLRGSPSV-HH-VNDAKMVICYMR--GPLVFIFNFHPT 826 (900)
Q Consensus 787 Rk~~paL~~g~~~i-~~-~~~~~~Vlaf~R--~~llvV~Nf~~~ 826 (900)
||++++|+.+.... .. ...++.+++|.. +.++|++|+++.
T Consensus 494 Rk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 494 RRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTS 537 (542)
T ss_pred hccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCC
Confidence 99999998764222 11 134567888876 379999999986
No 17
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.3e-72 Score=678.60 Aligned_cols=555 Identities=17% Similarity=0.218 Sum_probs=387.5
Q ss_pred CCCCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCC-CceeeeeeecCccEEEEEeCCCCCCCEEEEEEECC---CCC
Q 002609 278 DLPSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPP-IPYWLETRKGRKAWLKKYTPGIPHGSKYRVYFNTP---DGP 353 (900)
Q Consensus 278 ~~g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~-~~~~~~~~~~~~vW~~~~v~~~~~g~~Y~y~v~~~---~g~ 353 (900)
.+..+|+|+++++|++|+||||+|++|+|+||++.... ....++|+..+|+| ++++++..+|..|+|+|+.. .|.
T Consensus 210 ~y~~~LGA~~~~~g~~F~VWAPtA~~V~L~lyd~~~~~~~~~~~~m~~~~GVW-sv~v~~~~~G~~Y~Y~V~v~~p~~g~ 288 (970)
T PLN02877 210 AYDGPLGAHFSKDAVSLYLWAPTAQAVSLCLYDDPRGKEPLEIVQLKESNGVW-SVEGPKSWEGCYYVYEVSVYHPSTGK 288 (970)
T ss_pred cCCCCCcceEecCCEEEEEECCCCCEEEEEEecCCCCccceEEecccCCCCEE-EEEeccCCCCCeeEEEEeecccCCCc
Confidence 45568999999999999999999999999999875432 22345677677899 99999999999999999732 232
Q ss_pred ---eeecCCcccccccCCCCCCceeEecCCCccccccccCC---CCC--CCCCceEEEEecCccCCC------CCCCChh
Q 002609 354 ---LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNT---RPK--VPKSLRIYECHVGISGSK------PKISSFN 419 (900)
Q Consensus 354 ---~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~---~p~--~p~~~vIYE~hV~~~~~~------~~~Gt~~ 419 (900)
.+.+||||+.+..+ +..+.++..+.....+..|... +|. .++++||||+|||+|+.. ..+|||.
T Consensus 289 ~~~~~v~DPYA~als~n--g~~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtyl 366 (970)
T PLN02877 289 VETCYANDPYARGLSAD--GRRTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYL 366 (970)
T ss_pred ccccccCCccceEEecC--CCceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcch
Confidence 34689999998764 3444444433222245689762 343 357999999999999753 3579999
Q ss_pred hHHHh---h---hhHHHHcCcceEEEeeeeecCC-------------------------------------CCCCCCccC
Q 002609 420 EFTEK---V---LPHVKEAGYNVIQLFGVVEHKD-------------------------------------YFTVGYRVT 456 (900)
Q Consensus 420 g~~ek---~---L~yLk~LGvn~I~LmPv~e~~~-------------------------------------~~~wGY~~~ 456 (900)
+|+++ . |+|||+|||||||||||+++++ .++|||+|.
T Consensus 367 gftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~ 446 (970)
T PLN02877 367 AFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPV 446 (970)
T ss_pred hhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCcc
Confidence 99985 3 5555566999999999999853 268999999
Q ss_pred CCcccCCCCCC-------HHHHHHHHHHHhhcCcEEEEeecccccccccccc-cccCCCC-CCccccCCCCCccCCCCC-
Q 002609 457 NLYAVSSRYGT-------PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVG-LSQFDGS-NDCYFHTGKRGFHKYWGT- 526 (900)
Q Consensus 457 ~yfa~~~~yGt-------~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~-l~~fdg~-~~~yf~~~~~g~~~~wg~- 526 (900)
+||+|+++|+| +.|||+||++||++||+|||||||||++..++++ .+.++.. +.+||+.+..|....++|
T Consensus 447 ~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~ 526 (970)
T PLN02877 447 LWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCV 526 (970)
T ss_pred ccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCcc
Confidence 99999999998 4689999999999999999999999999876554 3467763 567777666665544544
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhc--
Q 002609 527 RMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHAL-- 604 (900)
Q Consensus 527 ~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~-- 604 (900)
+..+.++++||++|+|+++||++||||||||||+|+++.. ..|..+.+.|+++
T Consensus 527 n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~-------------------------~tm~~~~~~L~~i~~ 581 (970)
T PLN02877 527 NNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMK-------------------------RTMVRAKDALQSLTL 581 (970)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccH-------------------------HHHHHHHHHHHHHhh
Confidence 7789999999999999999999999999999999987621 1345555566665
Q ss_pred ------CCCEEEEEecCCCCCCcccc-----ccC---CCCCccccccchhHHHHHHHHccCC-C-C-------Cc-----
Q 002609 605 ------HPNIITIAEDATYYPGLCEP-----TTQ---GGLGFDYFLNLSASEMWLSFLENTP-D-H-------EW----- 656 (900)
Q Consensus 605 ------~P~~ilIaE~~~~~p~l~~~-----~~~---gg~GFD~~~n~~~~d~~~~~lk~~~-~-~-------~~----- 656 (900)
.|+++++||.|... .+... ..+ .|.|.. .|.|.+++.+|+.. . . ..
T Consensus 582 ~~~~~dg~~i~lyGEgW~~g-~~~~~~~~~~A~q~n~~g~gIg-----~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~p 655 (970)
T PLN02877 582 ERDGVDGSSIYLYGEGWDFG-EVAKNGRGVNASQFNLAGTGIG-----SFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQP 655 (970)
T ss_pred hhcccCCCceEEEEeCCCCC-CcccccccccccccccCCCceE-----EecchhHHHHcCCCCCCCcCCCceecccccCC
Confidence 38899999999732 11110 000 111111 24567777887632 1 0 00
Q ss_pred -----------------cHHHHHHHhhcCC-----------------------------CCccceEeccccccccccCCC
Q 002609 657 -----------------SMSKIVSTLVGNG-----------------------------QYSDKMIMYAENHNQSISGGR 690 (900)
Q Consensus 657 -----------------~~~~i~~~l~~~~-----------------------------~~~~~~v~Y~enHD~~~~G~~ 690 (900)
....+...+.+|- ..|.++|+|+++||+.
T Consensus 656 n~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~----- 730 (970)
T PLN02877 656 NGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNE----- 730 (970)
T ss_pred cccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCc-----
Confidence 0112222222220 2467899999999995
Q ss_pred chhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCcccccccccccccc
Q 002609 691 SFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLAN 770 (900)
Q Consensus 691 tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~ 770 (900)
||++++.-+... ..+ .....++++++.+++++.+| +|++++|+||.++|.++ ++++|+++..|+++|++.++
T Consensus 731 TL~D~l~~~~~~-~~s----~~~r~r~~~la~aiv~lsQG-ipF~haG~E~lRSK~~d--~nSYnSgD~~N~lDw~~~~n 802 (970)
T PLN02877 731 TLFDIISLKTPM-EIS----VDERCRINHLATSIIALSQG-IPFFHAGDEILRSKSLD--RDSYNSGDWFNRLDFSYDSN 802 (970)
T ss_pred hHHHHHHhhcCC-CCC----HHHHHHHHHHHHHHHHHhCh-hhHHhcchhhhcCCCCC--CCCCcCchhhheeccccccC
Confidence 677766432110 011 12345678889899999999 59999999999999886 57889999999999998321
Q ss_pred ---------ccC-----------------------chHHHHHHHHHHHHHhCcccccCCc-----eEEeecC----CCeE
Q 002609 771 ---------RLH-----------------------SNLYSFDQELMKLDENAKVLLRGSP-----SVHHVND----AKMV 809 (900)
Q Consensus 771 ---------~~~-----------------------~~l~~f~r~Li~LRk~~paL~~g~~-----~i~~~~~----~~~V 809 (900)
.++ ....+++|+||+||+++|+|+.+.. .+.+.+. .+.|
T Consensus 803 n~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gv 882 (970)
T PLN02877 803 NWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGV 882 (970)
T ss_pred ccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCE
Confidence 122 4558899999999999999997642 2333332 3489
Q ss_pred EEEEcC-----------------cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeecc
Q 002609 810 ICYMRG-----------------PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKR 872 (900)
Q Consensus 810 laf~R~-----------------~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~ 872 (900)
|+|.-+ .++||+|.+++. .++.+|..+.|...|..-.. .+....+. . ..
T Consensus 883 i~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~----~~~~~~~~~~~~~~l~~v~~-~~~d~~~~-------~--~~ 948 (970)
T PLN02877 883 IVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTE----VSFESPALKGRTLELHPVQV-MSADEVVK-------K--SV 948 (970)
T ss_pred EEEEEcCCCCccccccccccccCcEEEEEcCCCcc----EEEecccccccceeeccccc-ccccceec-------c--ce
Confidence 999752 389999999873 35666643344333321111 01111111 0 01
Q ss_pred ccCcceeEEEEEcCcEEEEEEEc
Q 002609 873 VDGLRNCIEVPLPSRTAQVYKLS 895 (900)
Q Consensus 873 ~~~~~~~~~l~LP~rsa~Vl~~~ 895 (900)
+. ....+++|||+|+.||...
T Consensus 949 ~~--~~~~~~tvp~~t~aVfv~~ 969 (970)
T PLN02877 949 YE--ASSGVFTVPPRTTAVFVEH 969 (970)
T ss_pred ee--ccCCeEEecCceEEEEEee
Confidence 11 1124789999999999863
No 18
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=2.2e-72 Score=679.09 Aligned_cols=553 Identities=14% Similarity=0.184 Sum_probs=391.7
Q ss_pred CCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee--cCccEEEEEeCCCCCCCEEEEEEECC---CCC---
Q 002609 282 NLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK--GRKAWLKKYTPGIPHGSKYRVYFNTP---DGP--- 353 (900)
Q Consensus 282 ~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~--~~~vW~~~~v~~~~~g~~Y~y~v~~~---~g~--- 353 (900)
.|+|+++++|++|+||||+|++|+|+||+.... ....++|.+ ..|+| +++++++.+|.+|+|+|+.. .|.
T Consensus 127 ~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~-~~~~~~M~~~~~~GVW-sv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~ 204 (898)
T TIGR02103 127 SLGATLTDSGVTFRLWAPTAQQVKLHIYSASKK-VETTLPMTRDSTSGVW-SAEGGSSWKGAYYRYEVTVYHPSTGKVET 204 (898)
T ss_pred CCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCC-ccceEeCccCCCCCEE-EEEECcCCCCCEeEEEEEEecCCCCeECC
Confidence 499999999999999999999999999987543 223466765 46788 99999999999999999742 243
Q ss_pred eeecCCcccccccCCCCCCceeEecCCCccccccccCCC---CC--CCCCceEEEEecCccCCC------CCCCChhhHH
Q 002609 354 LERIPAWATYVQPDADGKEAFAIHWEPSPEFAYKWRNTR---PK--VPKSLRIYECHVGISGSK------PKISSFNEFT 422 (900)
Q Consensus 354 ~~~~dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~---p~--~p~~~vIYE~hV~~~~~~------~~~Gt~~g~~ 422 (900)
.+.+||||+.+..+ +..+.++..+...-.+..|...+ |. .+++++|||+|||+||.. ..+|||.+++
T Consensus 205 ~~v~DPYA~als~n--~~~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~t 282 (898)
T TIGR02103 205 YLVTDPYSVSLSAN--SEYSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFT 282 (898)
T ss_pred eEEeCcCcceEcCC--CCCeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehh
Confidence 45789999998753 44444443332222467898654 32 358999999999999742 3579999999
Q ss_pred Hh------hhhHHHHcCcceEEEeeeeecCC-------------------------------------------------
Q 002609 423 EK------VLPHVKEAGYNVIQLFGVVEHKD------------------------------------------------- 447 (900)
Q Consensus 423 ek------~L~yLk~LGvn~I~LmPv~e~~~------------------------------------------------- 447 (900)
++ .|+||++|||||||||||+++..
T Consensus 283 E~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (898)
T TIGR02103 283 AADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNP 362 (898)
T ss_pred ccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccccccccccccccccccccccccccccch
Confidence 85 35555577999999999998742
Q ss_pred -------------CCCCCCccCCCcccCCCCCC-------HHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCC
Q 002609 448 -------------YFTVGYRVTNLYAVSSRYGT-------PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDG 507 (900)
Q Consensus 448 -------------~~~wGY~~~~yfa~~~~yGt-------~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg 507 (900)
.++|||+|.+||+|+++|++ +.|||+||++||++||+||||||+||++..+....+.|+.
T Consensus 363 ~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~ 442 (898)
T TIGR02103 363 EVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDK 442 (898)
T ss_pred hhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccc
Confidence 13799999999999999998 4799999999999999999999999999876544455666
Q ss_pred C-CCccccCCCCCcc-CCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcc
Q 002609 508 S-NDCYFHTGKRGFH-KYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQY 585 (900)
Q Consensus 508 ~-~~~yf~~~~~g~~-~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~ 585 (900)
. +.+|++.+..|.. +..+|.+++.++++||++|+++++||++||||||||||+|.++
T Consensus 443 ~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~--------------------- 501 (898)
T TIGR02103 443 IVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH--------------------- 501 (898)
T ss_pred cCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhC---------------------
Confidence 4 4455555444533 4456788999999999999999999999999999999998876
Q ss_pred cchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccccccCCCCCccc-cccc-hhHHHHHHHHccCC--CC-------
Q 002609 586 VDKDALLYLILANEILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDY-FLNL-SASEMWLSFLENTP--DH------- 654 (900)
Q Consensus 586 ~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~-~~n~-~~~d~~~~~lk~~~--~~------- 654 (900)
...+|+.++..+++++|+++++||.|.............+..+.. .... .|.|.+++.+++.. +.
T Consensus 502 ----~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~ 577 (898)
T TIGR02103 502 ----PKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQN 577 (898)
T ss_pred ----CHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccccccccccC
Confidence 245789999999999999999999997422111110000000000 0011 24466777777632 11
Q ss_pred ----Cc-----c----------------HHHHHHHhhcCC----------------------------CCccceEecccc
Q 002609 655 ----EW-----S----------------MSKIVSTLVGNG----------------------------QYSDKMIMYAEN 681 (900)
Q Consensus 655 ----~~-----~----------------~~~i~~~l~~~~----------------------------~~~~~~v~Y~en 681 (900)
.. + ...+...+.+|- ..|.++|+|+++
T Consensus 578 ~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~ 657 (898)
T TIGR02103 578 QGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSK 657 (898)
T ss_pred cceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeec
Confidence 00 0 112333333321 246789999999
Q ss_pred ccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccc
Q 002609 682 HNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLA 761 (900)
Q Consensus 682 HD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~ 761 (900)
||+. ||++.+.-+... ..+ .....++++++.+++++.+| +|++++|+||.++|.++ +++++++...|
T Consensus 658 HDN~-----TL~D~l~~~~~~-~~~----~~~r~r~~~la~a~~~lsQG-ipF~haG~E~lRSK~~~--~nSY~sgD~~N 724 (898)
T TIGR02103 658 HDNQ-----TLWDAISYKAAA-ETP----SAERVRMQAVSLSTVMLGQG-IPFFHAGSELLRSKSFD--RDSYDSGDWFN 724 (898)
T ss_pred cCCc-----cHHHHHHhhCCC-CCC----HHHHHHHHHHHHHHHHHhCh-hhHHhcchHhhcCCCCC--CCCCcCchhhh
Confidence 9995 677776432210 011 12345677888889999898 59999999999999876 57888888999
Q ss_pred cccccccccc--------------------------------cCchHHHHHHHHHHHHHhCcccccCCc-----eEEeec
Q 002609 762 NRHWDLLANR--------------------------------LHSNLYSFDQELMKLDENAKVLLRGSP-----SVHHVN 804 (900)
Q Consensus 762 ~~~W~~~~~~--------------------------------~~~~l~~f~r~Li~LRk~~paL~~g~~-----~i~~~~ 804 (900)
+++|+..++. ....+.+|+++||+||+++|+|+.+.. .+.+.+
T Consensus 725 ~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~ 804 (898)
T TIGR02103 725 RVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRN 804 (898)
T ss_pred eecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEec
Confidence 9999876430 136789999999999999999997642 233333
Q ss_pred C----CCeEEEEEcC---------------cEEEEEeCCCCCcccceEEeccC--CCeEEEEecCCCcccCCcccccccc
Q 002609 805 D----AKMVICYMRG---------------PLVFIFNFHPTDSYEDYSVGVEE--AGEYQIILNTDESKFGGQGLIKEHQ 863 (900)
Q Consensus 805 ~----~~~Vlaf~R~---------------~llvV~Nf~~~~s~~~~~i~lp~--~G~w~~vl~sd~~~~gG~g~~~~~~ 863 (900)
. .+.||+|.-. .++||+|.+++. .++ +|. +..|+++..... ++...+...
T Consensus 805 ~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~----~~~-~~~~~~~~~~l~~~~~~---~~d~~v~~~- 875 (898)
T TIGR02103 805 TGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEE----VTL-SPDFAGTGLELHAVQQA---SGDESVAKS- 875 (898)
T ss_pred cCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCCcc----EEE-ecccCCCcEEEEecccc---cCccccccc-
Confidence 2 2689999752 389999999873 233 432 335877533211 111111100
Q ss_pred cceeeeeccccCcceeEEEEEcCcEEEEEEEc
Q 002609 864 YLQRTISKRVDGLRNCIEVPLPSRTAQVYKLS 895 (900)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~~ 895 (900)
.+. ....+++|||+|++||.+.
T Consensus 876 --------~~~--~~~~~~~vp~~s~~V~~~~ 897 (898)
T TIGR02103 876 --------VYS--AANGTFTVPAWTTAVFVLP 897 (898)
T ss_pred --------eee--ccCCEEEEcCcEEEEEEec
Confidence 000 0124799999999999863
No 19
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-68 Score=626.31 Aligned_cols=554 Identities=20% Similarity=0.306 Sum_probs=382.6
Q ss_pred CCCCCC--eEEeC---CceEEEEEcCCCCcEEEEeecCCCCCCcee-eeeee-cCccEEEEEeCCCCCCCEEEEEEECCC
Q 002609 279 LPSNLP--YDVID---NGKDYDVFNVASDPRWQEKFRSKEPPIPYW-LETRK-GRKAWLKKYTPGIPHGSKYRVYFNTPD 351 (900)
Q Consensus 279 ~g~~lp--a~~~~---~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~-~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~~ 351 (900)
+|.+.| |++.+ +|++|+|||.+|++|+||||+......... +++.. .+.+| ++.+|++..|+.|.|++.++.
T Consensus 14 ~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw-~~~~p~~~~g~~y~yr~~g~~ 92 (697)
T COG1523 14 PGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIW-HLWLPGAKPGQVYGYRVHGPY 92 (697)
T ss_pred cCCcccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEE-EEEcCCCceeeEEEEecCCCc
Confidence 344555 88744 899999999999999999999875444333 55554 45688 999999999999999997642
Q ss_pred CC---------eeecCCcccccccCCCCC--C-----------------------ceeEecCCCccccccccCCC-CCCC
Q 002609 352 GP---------LERIPAWATYVQPDADGK--E-----------------------AFAIHWEPSPEFAYKWRNTR-PKVP 396 (900)
Q Consensus 352 g~---------~~~~dpya~~~~~~~~~~--~-----------------------~~~~~~~p~~~~~~~w~~~~-p~~p 396 (900)
.+ -..+||||+.+..+.... . ..+++.+ ..++|+.++ |..|
T Consensus 93 ~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~----~~~~w~~~~~~~~p 168 (697)
T COG1523 93 DPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVID----PLFDWENDKPPRIP 168 (697)
T ss_pred CCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEec----cccccccCCCCCCC
Confidence 11 235799999987653211 0 0111111 228999885 4456
Q ss_pred -CCceEEEEecCccC-CC-----CCCCChhhHHHh-hhhHHHHcCcceEEEeeeeecCC---------CCCCCCccCCCc
Q 002609 397 -KSLRIYECHVGISG-SK-----PKISSFNEFTEK-VLPHVKEAGYNVIQLFGVVEHKD---------YFTVGYRVTNLY 459 (900)
Q Consensus 397 -~~~vIYE~hV~~~~-~~-----~~~Gt~~g~~ek-~L~yLk~LGvn~I~LmPv~e~~~---------~~~wGY~~~~yf 459 (900)
.++||||+|||.|| .+ ..+|||.++++. .|+|||+|||||||||||+++.. .++|||+|.+||
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fF 248 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFF 248 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCccccc
Confidence 89999999999887 33 357999999975 49999999999999999999764 368999999999
Q ss_pred ccCCCCCC-------HHHHHHHHHHHhhcCcEEEEeecccccccccccc-cccCCC-CCCccccCCCCCc-cCCCCC-cc
Q 002609 460 AVSSRYGT-------PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVG-LSQFDG-SNDCYFHTGKRGF-HKYWGT-RM 528 (900)
Q Consensus 460 a~~~~yGt-------~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~-l~~fdg-~~~~yf~~~~~g~-~~~wg~-~~ 528 (900)
||+++|.+ ..|||.||+++|++||+||||||||||++....+ ..+|+| .+.+||+.+++|+ .+..|| +.
T Consensus 249 Ap~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNt 328 (697)
T COG1523 249 APEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNT 328 (697)
T ss_pred CCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcc
Confidence 99999986 4599999999999999999999999999865444 457999 5777888776654 577798 89
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCE
Q 002609 529 FKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNI 608 (900)
Q Consensus 529 ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ 608 (900)
+|.++|+||++|+|+|+||++||||||||||+|+.+.+...++... .++....+..+.+. .+
T Consensus 329 ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~--------------~~l~~~~~~~p~l~----~~ 390 (697)
T COG1523 329 LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDIN--------------ANLFLAGEGDPVLS----GV 390 (697)
T ss_pred cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccC--------------cchhhhccCCcccc----Cc
Confidence 9999999999999999999999999999999998775433211110 11111112222333 56
Q ss_pred EEEEecCCCCCCccccccCCCCC---ccccccchhHHHHHHHHccCCCCCccHHHHHHHhhcC-------CCCccceEec
Q 002609 609 ITIAEDATYYPGLCEPTTQGGLG---FDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGN-------GQYSDKMIMY 678 (900)
Q Consensus 609 ilIaE~~~~~p~l~~~~~~gg~G---FD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~-------~~~~~~~v~Y 678 (900)
.+|||.|+..++... .|..- -...||..+.+..+.++++... ....++.++.+. .+.+.++|+|
T Consensus 391 kliAepwD~g~~gyq---vG~Fpd~~~~aewng~~rD~vr~F~~G~~~---~~~~~a~rl~gS~d~~~~~~~~p~~sINy 464 (697)
T COG1523 391 KLIAEPWDIGPGGYQ---VGNFPDSPRWAEWNGRFRDDVRRFWRGDAG---LVGEFAKRLAGSSDLYKRNGRRPSQSINY 464 (697)
T ss_pred eeeecchhhcCCCcc---cccCCCccchhhhCCcccccccceeeCCCc---cHHHHHHHhhcCcchhhccCCCccceeeE
Confidence 699999975553221 11111 1134666677778888887654 356666666653 3568899999
Q ss_pred cccccccccCCCchhhhhcccc---------------cCCCCCch-------hhhhhhhHHHHHHHHHHHHhCCCceeee
Q 002609 679 AENHNQSISGGRSFAEILFGEI---------------SEHSPDTN-------NLLLRGCSLHKMIRLITFTIGGHAYLNF 736 (900)
Q Consensus 679 ~enHD~~~~G~~tl~~~l~~~~---------------~~~~~~~~-------~~~~r~~~l~kma~li~ltl~G~~Pliy 736 (900)
+++||.- ||.+.+.-.. ...+.++. ..+..++.+.+...+.+++++.|+||+-
T Consensus 465 v~aHDgf-----TL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~ 539 (697)
T COG1523 465 VTAHDGF-----TLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLL 539 (697)
T ss_pred EeecCCC-----cHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcccc
Confidence 9999996 3433322110 00111110 1222222233333344455554479999
Q ss_pred ccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCC--------ceEE-------
Q 002609 737 MGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGS--------PSVH------- 801 (900)
Q Consensus 737 ~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~--------~~i~------- 801 (900)
+|+|+|+++++. .++++.+...++++|+. +.+..+++|.+.||+|||+||+|+... ..+.
T Consensus 540 ~gDe~~rtq~gn--nNsYcqdn~inwlDW~~---~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~ 614 (697)
T COG1523 540 AGDEFGRTQYGN--NNAYCQDNEINWLDWST---EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGI 614 (697)
T ss_pred cccccccccccc--cccccCCcccceeccCc---cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCe
Confidence 999999998742 12333334689999993 367899999999999999999998621 1111
Q ss_pred ------eecCCCeEEEEEc-C---cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeec
Q 002609 802 ------HVNDAKMVICYMR-G---PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISK 871 (900)
Q Consensus 802 ------~~~~~~~Vlaf~R-~---~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~ 871 (900)
+.+.....+++.. + +++|++|...+. ..++++.+. ++|..++++.... +.
T Consensus 615 ~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~~~--~~~~lp~~~-~~~~~~~~~~~~~--~~--------------- 674 (697)
T COG1523 615 PLTQDDWNNGFTGALAVVLDGDKERLLVLINATAEP--VEFELPEDE-GKWAGLVDTSTPP--GF--------------- 674 (697)
T ss_pred eechhcccCCCCceEEEEecCCCccEEEEecCCccc--cceeccccc-CcceeeecccCCC--Cc---------------
Confidence 1122245556555 2 799999977663 344444432 7788888764321 10
Q ss_pred cccCcceeEEEEEcCcEEEEEEEccc
Q 002609 872 RVDGLRNCIEVPLPSRTAQVYKLSRI 897 (900)
Q Consensus 872 ~~~~~~~~~~l~LP~rsa~Vl~~~~~ 897 (900)
....+.++++|+.||.....
T Consensus 675 ------~~~~~~~~~~s~~vl~~~~~ 694 (697)
T COG1523 675 ------DIREVSLPGRSVLVLTRRSE 694 (697)
T ss_pred ------ccceeecCCcEEEEEeeccc
Confidence 01168899999999986543
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.8e-65 Score=643.68 Aligned_cols=475 Identities=17% Similarity=0.239 Sum_probs=347.0
Q ss_pred CCCCCCC--eEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeee-ecCccEEEEEeCCCCCCCEEEEEEECCCCC-
Q 002609 278 DLPSNLP--YDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETR-KGRKAWLKKYTPGIPHGSKYRVYFNTPDGP- 353 (900)
Q Consensus 278 ~~g~~lp--a~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~-~~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~- 353 (900)
.+|.+.| |++.++||+|+||||+|++|+||||+..+......++|. +.+++| +++++++.+|+.|+|+++++.++
T Consensus 9 ~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~~~~~~~~~l~~~~g~vW-~~~i~~~~~g~~Ygyrv~g~~~p~ 87 (1221)
T PRK14510 9 SPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWGVREEARIKLPGRTGDVW-HGFIVGVGPGARYGNRQEGPGGPG 87 (1221)
T ss_pred CCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEECCCCCeeEEEECCCCcCCEE-EEEEccCCCCcEEEEEeccCCCcc
Confidence 3455555 999999999999999999999999986443323345664 467888 99999999999999999876532
Q ss_pred --------eeecCCcccccccCCC------------CCC--ceeEecCCC--ccccccccCCCC-CCC-CCceEEEEecC
Q 002609 354 --------LERIPAWATYVQPDAD------------GKE--AFAIHWEPS--PEFAYKWRNTRP-KVP-KSLRIYECHVG 407 (900)
Q Consensus 354 --------~~~~dpya~~~~~~~~------------~~~--~~~~~~~p~--~~~~~~w~~~~p-~~p-~~~vIYE~hV~ 407 (900)
...+||||+.+..... +.. .......|. ...+|+|.++++ ..+ .+++|||+||+
T Consensus 88 ~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr 167 (1221)
T PRK14510 88 EGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVR 167 (1221)
T ss_pred cccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccc
Confidence 3478999999865321 000 000111121 123689987764 444 68999999999
Q ss_pred ccCC-C-----CCCCChhhHH--HhhhhHHHHcCcceEEEeeeeecCCC---------CCCCCccCCCcccCCCCC--CH
Q 002609 408 ISGS-K-----PKISSFNEFT--EKVLPHVKEAGYNVIQLFGVVEHKDY---------FTVGYRVTNLYAVSSRYG--TP 468 (900)
Q Consensus 408 ~~~~-~-----~~~Gt~~g~~--ek~L~yLk~LGvn~I~LmPv~e~~~~---------~~wGY~~~~yfa~~~~yG--t~ 468 (900)
.|+. + ...|+|+++. +. |+|||+||||+||||||+++... ++|||++.+||+|+++|| +.
T Consensus 168 ~ft~~~~~~gg~~~Gt~~~l~~~~~-i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~ 246 (1221)
T PRK14510 168 GFTLRHDFFPGNLRGTFAKLAAPEA-ISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGE 246 (1221)
T ss_pred hhhccCCCCCcccCcHHhhcCCchh-HHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcH
Confidence 8764 2 2468899988 44 99999999999999999998653 579999999999999999 99
Q ss_pred HHHHHHHHHHhhcCcEEEEeecccccccccccccc-cCCC-CCCccccCC---CCCccCCCCC-ccccCCCHHHHHHHHH
Q 002609 469 DDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLS-QFDG-SNDCYFHTG---KRGFHKYWGT-RMFKYDDLDVLHFLLS 542 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~-~fdg-~~~~yf~~~---~~g~~~~wg~-~~ln~~~~~vr~~lld 542 (900)
+|||+||++||++||+||||||+|||+.++..+.. .+.+ .+..||+.. ...+.+.||| +.+|+++|+|+++|++
T Consensus 247 ~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d 326 (1221)
T PRK14510 247 EEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMD 326 (1221)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999988655421 3444 455666643 2335678898 7889999999999999
Q ss_pred HHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEE-----EEecCCC
Q 002609 543 NLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIIT-----IAEDATY 617 (900)
Q Consensus 543 ~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~il-----IaE~~~~ 617 (900)
+++||++ |||||||||+|..|.+. +..||+.+...++++.|+.++ |||.|..
T Consensus 327 ~lr~Wv~-~gVDGfRfDla~~l~r~----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~ 383 (1221)
T PRK14510 327 VLRSWAK-RGVDGFRLDLADELARE----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDD 383 (1221)
T ss_pred HHHHHHH-hCCCEEEEechhhhccC----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecccC
Confidence 9999998 99999999999877421 234678889999999998877 9999974
Q ss_pred CCCccccccCCCCCcc---ccccchhHHHHHHHHccCCCCCccHHHHHHHhhcC-------CCCccceEecccccccccc
Q 002609 618 YPGLCEPTTQGGLGFD---YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGN-------GQYSDKMIMYAENHNQSIS 687 (900)
Q Consensus 618 ~p~l~~~~~~gg~GFD---~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~-------~~~~~~~v~Y~enHD~~~~ 687 (900)
.++.. ..+ .|+ ..+|..+.+.+++++++... .+..+...+.+. .+.+..++||++|||..+
T Consensus 384 ~~~~~---~~g--~f~~~~~~~N~~frd~vr~f~~g~~~---~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r- 454 (1221)
T PRK14510 384 GLGGY---QYG--KFPQYWGEWNDPLRDIMRRFWLGDIG---MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT- 454 (1221)
T ss_pred CCCcc---ccC--CCCcceeeeccHHHHHHHHHhcCCCc---hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH-
Confidence 33211 111 233 35788888999999987543 245555555432 235578999999999974
Q ss_pred CCCchhhhhcc---------------cccCCCCCch-------hhhh-hhhHHHHHHHHHHHHhCCCceeeeccccccCC
Q 002609 688 GGRSFAEILFG---------------EISEHSPDTN-------NLLL-RGCSLHKMIRLITFTIGGHAYLNFMGNEFGHP 744 (900)
Q Consensus 688 G~~tl~~~l~~---------------~~~~~~~~~~-------~~~~-r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~ 744 (900)
+.+.+.- ...+.+.++. ..+. ...++.|++.+++|+++| +||||||||+|++
T Consensus 455 ----l~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~G-iP~Iy~GdE~g~t 529 (1221)
T PRK14510 455 ----LLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPG-VPMLYYGDEAGRS 529 (1221)
T ss_pred ----HHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCC-CcEEecchhcccc
Confidence 3333320 0001111111 1111 122345667778888888 6999999999999
Q ss_pred CCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCC
Q 002609 745 KRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGS 797 (900)
Q Consensus 745 ~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~ 797 (900)
+.++. ++++.+..+++++|+..+ ++|++|+|+||+|||+||+|+.+.
T Consensus 530 q~Gn~--n~y~~~~~r~~~~W~~~~----~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 530 QNGNN--NGYAQDNNRGTYPWGNED----EELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred cCCCC--CCCCCCCccccCCccccc----HHHHHHHHHHHHHHHhChhhccCc
Confidence 87532 233444567889998643 479999999999999999998764
No 21
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=8.6e-54 Score=509.68 Aligned_cols=464 Identities=15% Similarity=0.166 Sum_probs=309.2
Q ss_pred EeCCceEEEEEcCCCC---cEEEEeecCCCCCCceeeeeee--cC--ccEEEEEeCCC--CCCCEEEEEEECCCCCeeec
Q 002609 287 VIDNGKDYDVFNVASD---PRWQEKFRSKEPPIPYWLETRK--GR--KAWLKKYTPGI--PHGSKYRVYFNTPDGPLERI 357 (900)
Q Consensus 287 ~~~~g~~F~l~sp~a~---~V~l~l~~~~~~~~~~~~~~~~--~~--~vW~~~~v~~~--~~g~~Y~y~v~~~~g~~~~~ 357 (900)
+.++-+.++|..+... +|.|.....++ ...++|++ .. -.||++.++-. ..-..|.|+|...++.. ..
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~---~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~~~-~~ 91 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE---EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDRQR-WF 91 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC---EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCEEE-EE
Confidence 3556789999877544 66665433332 12456654 22 24568887643 33367888886543221 11
Q ss_pred CCcccccccCCCCCCceeEecCCCccccccccC--CCCCCCCCceEEEEec-CccCCCC---------------------
Q 002609 358 PAWATYVQPDADGKEAFAIHWEPSPEFAYKWRN--TRPKVPKSLRIYECHV-GISGSKP--------------------- 413 (900)
Q Consensus 358 dpya~~~~~~~~~~~~~~~~~~p~~~~~~~w~~--~~p~~p~~~vIYE~hV-~~~~~~~--------------------- 413 (900)
.. .+ ... ..|.....|.+.. ..|.+-++.|||++.+ |++...+
T Consensus 92 ~~---------~g-~~~---~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~ 158 (598)
T PRK10785 92 TP---------QG-FSR---RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILR 158 (598)
T ss_pred cC---------Cc-eee---ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCccccc
Confidence 11 00 000 0110011122211 2344457899999999 4431100
Q ss_pred ---------------CCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHH
Q 002609 414 ---------------KISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEA 478 (900)
Q Consensus 414 ---------------~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~a 478 (900)
.-|+++||+++ |||||+||||+|||+||+++++ +|||+++||++|+|+|||.++||+||++|
T Consensus 159 ~w~~~~~~~~~~~~f~GGDl~GI~~k-LdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~a 235 (598)
T PRK10785 159 DWDEPVTAQAGGSTFYGGDLDGISEK-LPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLRHAT 235 (598)
T ss_pred CcCCCcccccccccccCcCHHHHHHH-HHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHHHHH
Confidence 03899999999 9999999999999999999875 59999999999999999999999999999
Q ss_pred hhcCcEEEEeeccccccccccccccc-------CCCCC---CccccCCCCCccCCC-C---CccccCCCHHHHHHHHH--
Q 002609 479 HGLGLLVFLDIVHSYSAADQMVGLSQ-------FDGSN---DCYFHTGKRGFHKYW-G---TRMFKYDDLDVLHFLLS-- 542 (900)
Q Consensus 479 H~~GI~VILDvV~NH~~~~~~~~l~~-------fdg~~---~~yf~~~~~g~~~~w-g---~~~ln~~~~~vr~~lld-- 542 (900)
|++||+||||+|+||++.++.+.... +.+.. ..||.-...+....| | .++||++||+|+++|++
T Consensus 236 H~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~ 315 (598)
T PRK10785 236 QQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGE 315 (598)
T ss_pred HHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhh
Confidence 99999999999999999988654211 11111 123332223333333 3 38999999999999995
Q ss_pred --HHHHHHHh-cCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCC
Q 002609 543 --NLNWWVVE-YQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYP 619 (900)
Q Consensus 543 --~l~~Wl~e-ygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p 619 (900)
+++||+++ |||||||+|+|..+. ...+ ....+.||+.+++.+++.+|++++|||.|....
T Consensus 316 ~~v~~~Wl~~~~giDG~RlDva~~v~-~~~~----------------~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~ 378 (598)
T PRK10785 316 DSIVRHWLKAPYNIDGWRLDVVHMLG-EGGG----------------ARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR 378 (598)
T ss_pred hHHHHHhhcCCCCCcEEEEecHhHhc-cccC----------------ccccHHHHHHHHHHHHhhCCCeEEEEeccCChh
Confidence 79999987 999999999986542 1100 113467999999999999999999999886321
Q ss_pred CccccccCCCCCccccccc-hhHHHHHHHHccCCC----CCccHHHHHHHhhc---CCCCc--cceEeccccccccccCC
Q 002609 620 GLCEPTTQGGLGFDYFLNL-SASEMWLSFLENTPD----HEWSMSKIVSTLVG---NGQYS--DKMIMYAENHNQSISGG 689 (900)
Q Consensus 620 ~l~~~~~~gg~GFD~~~n~-~~~d~~~~~lk~~~~----~~~~~~~i~~~l~~---~~~~~--~~~v~Y~enHD~~~~G~ 689 (900)
.. ..|.++|..+|. ++...++.++..... ...+...+...+.. +.... ..+++|++|||++|.
T Consensus 379 ~~-----l~~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~-- 451 (598)
T PRK10785 379 QW-----LQADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARF-- 451 (598)
T ss_pred hh-----ccCccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchh--
Confidence 11 123345554553 344445555543210 01123333332221 11111 135689999999853
Q ss_pred CchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccc
Q 002609 690 RSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLA 769 (900)
Q Consensus 690 ~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~ 769 (900)
...+.+ ...+.|++.+++||++| +|+||||+|+|+.+..+ ++.+..|+|+..+
T Consensus 452 ---~~~~~~---------------~~~~~kla~~ll~t~pG-iP~IYYGdE~G~~g~~d--------p~~R~~m~W~~~~ 504 (598)
T PRK10785 452 ---KTLLGG---------------DKARMPLALVWLFTWPG-VPCIYYGDEVGLDGGND--------PFCRKPFPWDEAK 504 (598)
T ss_pred ---hhhhCC---------------CHHHHHHHHHHHHhCCC-CcEEEeeeeccccCCCC--------CCccCCcCCCccc
Confidence 222211 12356888889999999 59999999999986432 3345678998654
Q ss_pred cccCchHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEc----CcEEEEEeCCC
Q 002609 770 NRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMR----GPLVFIFNFHP 825 (900)
Q Consensus 770 ~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~ 825 (900)
...++++|+|+||+||+++|+|+.|....... ++.|++|.| +.++||+|++.
T Consensus 505 --~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~--~~~v~af~R~~~~~~vlVviN~s~ 560 (598)
T PRK10785 505 --QDGALLALYQRMIALRKKSQALRRGGCQVLYA--EGNVVVFARVLQQQRVLVAINRGE 560 (598)
T ss_pred --CchHHHHHHHHHHHHHhhCcccccCcEEEEEe--CCCEEEEEEECCCCEEEEEEECCC
Confidence 45689999999999999999999997665533 346999999 47999999983
No 22
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.8e-52 Score=494.27 Aligned_cols=446 Identities=18% Similarity=0.258 Sum_probs=288.9
Q ss_pred CCceEEEEecCccCC--CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHH
Q 002609 397 KSLRIYECHVGISGS--KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRL 474 (900)
Q Consensus 397 ~~~vIYE~hV~~~~~--~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~L 474 (900)
+++||||++|+.|.. .++.|+|+|++++ ||||++||||+||||||++++.. +|||++.|||+|+|+|||.++||+|
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~i~L~Pi~~~~~~-~~gY~~~dy~~vd~~~Gt~~df~~L 81 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDALWLLPFFQSPLR-DDGYDVSDYRAILPEFGTIDDFKDF 81 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCEEEECCCcCCCCC-CCCCCcccccccChhhCCHHHHHHH
Confidence 688999999998865 3458999999999 99999999999999999998763 6999999999999999999999999
Q ss_pred HHHHhhcCcEEEEeecccccccccccccccC---CCCCCcccc-CCCC------------CccCCC--------------
Q 002609 475 VDEAHGLGLLVFLDIVHSYSAADQMVGLSQF---DGSNDCYFH-TGKR------------GFHKYW-------------- 524 (900)
Q Consensus 475 V~~aH~~GI~VILDvV~NH~~~~~~~~l~~f---dg~~~~yf~-~~~~------------g~~~~w-------------- 524 (900)
|++||++||+||||+|+||++.++++..... ++....||. .+.. .....|
T Consensus 82 v~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 161 (539)
T TIGR02456 82 VDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRF 161 (539)
T ss_pred HHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecc
Confidence 9999999999999999999999886542211 111111221 1100 011122
Q ss_pred --CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccc-hhHHHHHHHHHHHH
Q 002609 525 --GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVD-KDALLYLILANEIL 601 (900)
Q Consensus 525 --g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d-~~a~~~l~~~~~~l 601 (900)
+.++||+++|+||++|+++++||+ ++||||||||++++|.... |.. ..+ .+...||+.+++.+
T Consensus 162 ~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~-~~~------------~~~~p~~~~f~~~~~~~v 227 (539)
T TIGR02456 162 FSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYERE-GTS------------CENLPETHEFLKRLRKMV 227 (539)
T ss_pred cCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccC-CCc------------cCCCchHHHHHHHHHHHH
Confidence 237999999999999999999999 5999999999999874321 110 011 23578999999999
Q ss_pred HhcCCCEEEEEecCCCCCCccccc-cC-CCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhc--CCCCccceEe
Q 002609 602 HALHPNIITIAEDATYYPGLCEPT-TQ-GGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVG--NGQYSDKMIM 677 (900)
Q Consensus 602 ~~~~P~~ilIaE~~~~~p~l~~~~-~~-gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~--~~~~~~~~v~ 677 (900)
++.+|++++|||.+. ++...... .. +..+++..+++.+...+...+.. .....+...+.. .........+
T Consensus 228 ~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~-----~~~~~l~~~l~~~~~~~~~~~~~~ 301 (539)
T TIGR02456 228 DREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRR-----EDRSPIIDILKETPDIPDSCQWCI 301 (539)
T ss_pred HHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhhccccc-----CCHHHHHHHHHHhhhccCCCceee
Confidence 999999999999743 22111111 11 11256666666554332222211 123333333221 1122335678
Q ss_pred ccccccccccCCC------chhhhhcccccCCCCCch------hhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCC
Q 002609 678 YAENHNQSISGGR------SFAEILFGEISEHSPDTN------NLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPK 745 (900)
Q Consensus 678 Y~enHD~~~~G~~------tl~~~l~~~~~~~~~~~~------~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~ 745 (900)
|++|||+.+..-- .+.... ........+.. ........+.|++++++||++| +|+||||+|+|+.+
T Consensus 302 fl~nHD~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG-~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 302 FLRNHDELTLEMVTDEERDFMYAAY-APDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPG-SPILYYGDEIGMGD 379 (539)
T ss_pred ecCCCCccCccccChhhhhhhhhhc-cCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCC-ceEEEechhhcCcC
Confidence 9999999642100 000000 00000000000 0000122456889999999999 69999999999975
Q ss_pred CCCCCCCCCCCcccccccccccccc--------------------------------ccCchHHHHHHHHHHHHHhCccc
Q 002609 746 RVEFPMPSNNFSFSLANRHWDLLAN--------------------------------RLHSNLYSFDQELMKLDENAKVL 793 (900)
Q Consensus 746 ~~d~p~~~nn~s~~~~~~~W~~~~~--------------------------------~~~~~l~~f~r~Li~LRk~~paL 793 (900)
..... .....+.+|+|+.... ....++++|+|+||+||+++++|
T Consensus 380 ~~~~~----~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL 455 (539)
T TIGR02456 380 NIWLG----DRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAF 455 (539)
T ss_pred CCccC----CCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCccc
Confidence 32110 0111234577764210 12467999999999999999999
Q ss_pred ccCCceEEeecCCCeEEEEEc----CcEEEEEeCCCCCcccceEEeccC--CCeEEEEecCCCcccCCccccccccccee
Q 002609 794 LRGSPSVHHVNDAKMVICYMR----GPLVFIFNFHPTDSYEDYSVGVEE--AGEYQIILNTDESKFGGQGLIKEHQYLQR 867 (900)
Q Consensus 794 ~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~s~~~~~i~lp~--~G~w~~vl~sd~~~~gG~g~~~~~~~~~~ 867 (900)
+.|....... .+++|++|.| +.++||+|++.++ ..+.+.++. ++.+..+++++.. .
T Consensus 456 ~~G~~~~l~~-~~~~v~~f~R~~~~~~vlVv~N~s~~~--~~v~l~~~~~~~~~~~dl~~~~~~--------~------- 517 (539)
T TIGR02456 456 GRGSLTFLPT-GNRRVLAFLREYEGERVLCVFNFSRNP--QAVELDLSEFAGRVPVELIGGAPF--------P------- 517 (539)
T ss_pred ccCceEEEec-CCCCEEEEEEEcCCcEEEEEEeCCCCC--EEeeccccccccCcceecccCCcc--------c-------
Confidence 9987655433 2356999999 3799999999763 233333321 1133334322110 0
Q ss_pred eeeccccCcceeEEEEEcCcEEEEEEE
Q 002609 868 TISKRVDGLRNCIEVPLPSRTAQVYKL 894 (900)
Q Consensus 868 ~~~~~~~~~~~~~~l~LP~rsa~Vl~~ 894 (900)
... ...++|+|||.++++|+.
T Consensus 518 ----~~~--~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 518 ----PVG--GDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred ----ccc--CCcceEEECCceEEEEEe
Confidence 000 123789999999999974
No 23
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=6.4e-51 Score=480.48 Aligned_cols=442 Identities=18% Similarity=0.221 Sum_probs=291.5
Q ss_pred CCceEEEEecCccCC--CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHH
Q 002609 397 KSLRIYECHVGISGS--KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRL 474 (900)
Q Consensus 397 ~~~vIYE~hV~~~~~--~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~L 474 (900)
++.||||+|++.|.. ..+.|+|+|++++ |+||++||||+|||+||++++.. .+||+++||++++|+|||.++|++|
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~i~l~Pi~~~~~~-~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDYIWLNPFYVSPQK-DNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCEEEECCcccCCCC-CCCCCccccCccCcccCCHHHHHHH
Confidence 578999999998864 3468999999999 99999999999999999998754 4799999999999999999999999
Q ss_pred HHHHhhcCcEEEEeecccccccccccccccC--CCC-CCccccCCCCCcc-C---------CC----------------C
Q 002609 475 VDEAHGLGLLVFLDIVHSYSAADQMVGLSQF--DGS-NDCYFHTGKRGFH-K---------YW----------------G 525 (900)
Q Consensus 475 V~~aH~~GI~VILDvV~NH~~~~~~~~l~~f--dg~-~~~yf~~~~~g~~-~---------~w----------------g 525 (900)
|++||++||+||||+|+||++.++.+..... ++. ..+|+..+..+.. + .| .
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 160 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKT 160 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCc
Confidence 9999999999999999999999886543222 111 1122121111100 0 11 1
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCC-hhhhhhcccchhHHHHHHHHHHHHHhc
Q 002609 526 TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGD-LEEYCNQYVDKDALLYLILANEILHAL 604 (900)
Q Consensus 526 ~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~-~~~~~~~~~d~~a~~~l~~~~~~l~~~ 604 (900)
.++||++||+|+++|+++++||+ ++||||||||+|.+|.... .+...... -..++. ...+...||+++++.+++
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~-~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~- 235 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQ-FFEDDEIGDGRRFYT--DGPRVHEYLQEMNQEVFG- 235 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCc-ccCCCCCCCCccccC--CChHHHHHHHHHHHHhhc-
Confidence 37999999999999999999999 5899999999999874321 11110000 000000 113467899999999988
Q ss_pred CCCEEEEEecCCCCCCccccc-cCCCCCccccccchhHHHHHHHHccCC--CCCccHHHHHHHhh---cCCC-CccceEe
Q 002609 605 HPNIITIAEDATYYPGLCEPT-TQGGLGFDYFLNLSASEMWLSFLENTP--DHEWSMSKIVSTLV---GNGQ-YSDKMIM 677 (900)
Q Consensus 605 ~P~~ilIaE~~~~~p~l~~~~-~~gg~GFD~~~n~~~~d~~~~~lk~~~--~~~~~~~~i~~~l~---~~~~-~~~~~v~ 677 (900)
.|++++|||.|+..+...... ...+.++|+.+|+. .....+..+.. ...+....+...+. .... ......+
T Consensus 236 ~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (543)
T TIGR02403 236 DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFH--HLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNAL 313 (543)
T ss_pred cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChh--hhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceee
Confidence 899999999987543322211 12234566655543 22222222211 11233333333221 1111 2234567
Q ss_pred ccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCC-----C-
Q 002609 678 YAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFP-----M- 751 (900)
Q Consensus 678 Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p-----~- 751 (900)
|++|||++| +..++.+.. . ...+..|++++++||++| +|+||||||+|+.+....+ +
T Consensus 314 fl~NHD~~R-----~~s~~g~~~-----~------~~~~~~k~~a~ll~tlpG-~P~IYYGdEiGm~~~~~~~~~~~~D~ 376 (543)
T TIGR02403 314 FWNNHDQPR-----AVSRFGDDG-----E------YRVESAKMLAAAIHLLRG-TPYIYQGEEIGMTNPKFTNIEDYRDV 376 (543)
T ss_pred ecCCCChhh-----HHHhcCCch-----h------hHHHHHHHHHHHHHHCCC-CeEEEeccccCCCCCCCCCHHHhcCH
Confidence 999999985 344442211 0 011235777778888888 6999999999998741100 0
Q ss_pred -----------CCC------------CCcccccccccccccc-------------------------ccCchHHHHHHHH
Q 002609 752 -----------PSN------------NFSFSLANRHWDLLAN-------------------------RLHSNLYSFDQEL 783 (900)
Q Consensus 752 -----------~~n------------n~s~~~~~~~W~~~~~-------------------------~~~~~l~~f~r~L 783 (900)
.+. .....+.+|+|+...+ ....++++|+|+|
T Consensus 377 ~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~L 456 (543)
T TIGR02403 377 ESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKL 456 (543)
T ss_pred HHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHH
Confidence 000 0112466889975321 1247899999999
Q ss_pred HHHHHhCcccccCCceEEeecCCCeEEEEEc----CcEEEEEeCCCCCcccceEEeccC-CCeEEEEecCCCcccCCccc
Q 002609 784 MKLDENAKVLLRGSPSVHHVNDAKMVICYMR----GPLVFIFNFHPTDSYEDYSVGVEE-AGEYQIILNTDESKFGGQGL 858 (900)
Q Consensus 784 i~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~s~~~~~i~lp~-~G~w~~vl~sd~~~~gG~g~ 858 (900)
|+|||++|+|..|....... .++.|++|.| +.++||+|++.+. . .+.+|. .+.|++++++.....
T Consensus 457 i~lRk~~~aL~~G~~~~~~~-~~~~v~a~~R~~~~~~~lVv~N~s~~~--~--~~~l~~~~~~~~~~~~~~~~~~----- 526 (543)
T TIGR02403 457 IALRKSEPVITDGDYQFLLP-DDPSVWAYTRTYKNQKLLVINNFYGEE--K--TIELPLDLLSGKILLSNYEEAE----- 526 (543)
T ss_pred HHHHhhcccccCccEEEeec-CCCcEEEEEEEcCCcEEEEEEECCCCC--e--EeeCCccCcCceEEEecCCCcC-----
Confidence 99999999999887655432 3346999999 3799999999763 2 345542 234555655422100
Q ss_pred ccccccceeeeeccccCcceeEEEEEcCcEEEEEE
Q 002609 859 IKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYK 893 (900)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~ 893 (900)
....++|||++++|+.
T Consensus 527 -------------------~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 527 -------------------KDAKLELKPYEAIVLL 542 (543)
T ss_pred -------------------CCCcEEECCceEEEEe
Confidence 0145889999999985
No 24
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.7e-50 Score=476.57 Aligned_cols=447 Identities=17% Similarity=0.228 Sum_probs=292.0
Q ss_pred CCCCCceEEEEecCccCC--CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHH
Q 002609 394 KVPKSLRIYECHVGISGS--KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDF 471 (900)
Q Consensus 394 ~~p~~~vIYE~hV~~~~~--~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~el 471 (900)
.+.++.||||++++.|.. ..+.|+|+|++++ ||||++||||+||||||++++.. .|||++.||++|+++|||.+||
T Consensus 6 ~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 6 HWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred hhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCcccCCHHHH
Confidence 344688999999998854 4568999999999 99999999999999999987753 5899999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEeecccccccccccccccCCCCC---Cccc-cCC-----CCCcc-----CC--C-----------
Q 002609 472 KRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSN---DCYF-HTG-----KRGFH-----KY--W----------- 524 (900)
Q Consensus 472 k~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~---~~yf-~~~-----~~g~~-----~~--w----------- 524 (900)
|+||++||++||+||||+|+||++.++++.....+... .+|. +.+ +..+. +. |
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 99999999999999999999999998876543322211 1121 111 00000 00 1
Q ss_pred ---CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccC-CChhhhhhcccchhHHHHHHHHHHH
Q 002609 525 ---GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLT-GDLEEYCNQYVDKDALLYLILANEI 600 (900)
Q Consensus 525 ---g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~-g~~~~~~~~~~d~~a~~~l~~~~~~ 600 (900)
+.++||++||+|+++|+++++||+ ++||||||+|+|.+|... .|+.... +....++. ...+...||+++++.
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 239 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFYT--DGPRAHEFLQEMNRD 239 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcC-CCCCCCcccccccccC--CChHHHHHHHHHHHH
Confidence 237999999999999999999999 799999999999998532 2332100 00011111 113467788888765
Q ss_pred HHhcCCCEEEEEecCCCCCCccccc-cCCCCCccccccchhHHHHHHHHccCC--CCCccHHHHHHHhhc---CCCCccc
Q 002609 601 LHALHPNIITIAEDATYYPGLCEPT-TQGGLGFDYFLNLSASEMWLSFLENTP--DHEWSMSKIVSTLVG---NGQYSDK 674 (900)
Q Consensus 601 l~~~~P~~ilIaE~~~~~p~l~~~~-~~gg~GFD~~~n~~~~d~~~~~lk~~~--~~~~~~~~i~~~l~~---~~~~~~~ 674 (900)
+.. .+++++|||.|...+..+... ...+..+++.+++. .....++.+.. ...++...+...+.. .......
T Consensus 240 ~~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (551)
T PRK10933 240 VFT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFH--HLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHNVAW 316 (551)
T ss_pred hhc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHH--HhhhhhccCCcccccccCHHHHHHHHHHHHHhhcccCe
Confidence 532 346899999886433222211 11222344333332 22223332211 112334333332211 1112234
Q ss_pred eEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCC---
Q 002609 675 MIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPM--- 751 (900)
Q Consensus 675 ~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~--- 751 (900)
...|++|||++| +..++.+... ...+..||+++++||++| +|+||||+|+|+.+. .+++
T Consensus 317 ~~~fl~NHD~~R-----~~sr~g~~~~-----------~~~~~aklla~ll~tlpG-~P~IYyGeEiGm~~~-~~~~~~~ 378 (551)
T PRK10933 317 NALFWCNHDQPR-----IVSRFGDEGE-----------YRVPAAKMLAMVLHGMQG-TPYIYQGEEIGMTNP-HFTRITD 378 (551)
T ss_pred eccccCCCCccc-----HHHHcCCchh-----------HHHHHHHHHHHHHHhCCC-ceEEEeecccCCCCC-CCCCHHH
Confidence 567899999986 3444422110 112346788888899999 699999999999872 1100
Q ss_pred ---C------------C------------CCCcccccccccccccc-------------------------ccCchHHHH
Q 002609 752 ---P------------S------------NNFSFSLANRHWDLLAN-------------------------RLHSNLYSF 779 (900)
Q Consensus 752 ---~------------~------------nn~s~~~~~~~W~~~~~-------------------------~~~~~l~~f 779 (900)
+ + ......+.+|+|+.... ....++++|
T Consensus 379 ~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~ 458 (551)
T PRK10933 379 YRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYT 458 (551)
T ss_pred hcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHH
Confidence 0 0 01111467899976431 023679999
Q ss_pred HHHHHHHHHhCcccccCCceEEeecCCCeEEEEEc----CcEEEEEeCCCCCcccceEEecc-CCCeEEEEecCCCcccC
Q 002609 780 DQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMR----GPLVFIFNFHPTDSYEDYSVGVE-EAGEYQIILNTDESKFG 854 (900)
Q Consensus 780 ~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~~~~s~~~~~i~lp-~~G~w~~vl~sd~~~~g 854 (900)
+|+||+|||++|+|..|...... ...+.|++|.| +.++||+|++.+. ..+.++ ..+.|++++++.....
T Consensus 459 yk~Li~lRk~~~aL~~G~~~~~~-~~~~~v~af~R~~~~~~~lvv~N~s~~~----~~~~~~~~~~~~~~~l~~~~~~~- 532 (551)
T PRK10933 459 YQKLIALRKQEPVLTWGDYQDLL-PNHPSLWCYRREWQGQTLLVIANLSREP----QPWQPGQMRGNWQLLMHNYEEAS- 532 (551)
T ss_pred HHHHHHHhhcChhhccceeEEec-cCCCcEEEEEEEcCCcEEEEEEECCCCC----eeeecCcccCCceEEeecCcccc-
Confidence 99999999999999988755432 23456999999 3899999999763 234443 2467888776521100
Q ss_pred CcccccccccceeeeeccccCcceeEEEEEcCcEEEEEEEc
Q 002609 855 GQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLS 895 (900)
Q Consensus 855 G~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~~ 895 (900)
. ....++|||.++.|+..+
T Consensus 533 --------------------~--~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 533 --------------------P--QPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred --------------------C--CCCcEEECCCeEEEEEeC
Confidence 0 013488999999998753
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=6.5e-47 Score=450.67 Aligned_cols=365 Identities=17% Similarity=0.233 Sum_probs=244.5
Q ss_pred CCceEEEEecCccCC-C-----------C--------CCCChhhHHHhhhhHHHHcCcceEEEeeeeecC----------
Q 002609 397 KSLRIYECHVGISGS-K-----------P--------KISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHK---------- 446 (900)
Q Consensus 397 ~~~vIYE~hV~~~~~-~-----------~--------~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~---------- 446 (900)
++.+||++.+.-|.. . . ..|+|+|++++ ||||++||||+|||+||+++.
T Consensus 188 ~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~aIwlsPi~~~~~~~~~~g~~g 266 (683)
T PRK09505 188 HNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNALWISSPLEQIHGWVGGGTKG 266 (683)
T ss_pred ccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCEEEeCcccccccccccccccc
Confidence 578899999954421 1 0 12899999999 999999999999999999873
Q ss_pred ---CCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccc-----cc-cccC-------CCCCC
Q 002609 447 ---DYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQM-----VG-LSQF-------DGSND 510 (900)
Q Consensus 447 ---~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~-----~~-l~~f-------dg~~~ 510 (900)
.+.+|||++.||+.++++|||.+|||+||++||++||+||||+|+||++..+. .+ ...| .+.+.
T Consensus 267 ~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~ 346 (683)
T PRK09505 267 DFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGE 346 (683)
T ss_pred CCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCc
Confidence 25789999999999999999999999999999999999999999999995321 00 0000 00000
Q ss_pred c----------cccC--------CCCCccCCCC-------------------------CccccCC---------------
Q 002609 511 C----------YFHT--------GKRGFHKYWG-------------------------TRMFKYD--------------- 532 (900)
Q Consensus 511 ~----------yf~~--------~~~g~~~~wg-------------------------~~~ln~~--------------- 532 (900)
. .++. +...+...|| .++||.+
T Consensus 347 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p 426 (683)
T PRK09505 347 RWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKP 426 (683)
T ss_pred ccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCc
Confidence 0 0010 0011112222 2455554
Q ss_pred --------CHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHH---
Q 002609 533 --------DLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEIL--- 601 (900)
Q Consensus 533 --------~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l--- 601 (900)
||+|+++|++++++|+++|||||||+|+|++|- ..||+.++..+
T Consensus 427 ~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~-------------------------~~FW~~~~~~~~~~ 481 (683)
T PRK09505 427 DTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE-------------------------LPAWQQLKQEASAA 481 (683)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC-------------------------HHHHHHHHHHHHHH
Confidence 569999999999999999999999999999872 12344443333
Q ss_pred ----HhcCC-------CEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCC
Q 002609 602 ----HALHP-------NIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQ 670 (900)
Q Consensus 602 ----~~~~P-------~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~ 670 (900)
++.+| ++++|||.|...+.. .... +.+||..+|+.+.....+.+... ..+..+...+. ...
T Consensus 482 l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~-~~y~--~~~fDsv~NF~~~~~~~~~~~~~----~~l~~~~~~~~-~~~ 553 (683)
T PRK09505 482 LAEWKKANPDKALDDAPFWMTGEAWGHGVMK-SDYY--RHGFDAMINFDYQEQAAKAVDCL----AQMDPTYQQMA-EKL 553 (683)
T ss_pred HHHHHHhccccccccCCeEEEEEecCCchhh-HHHH--hhcCccccCchHHHHHHHHHHHH----HHHHHHHHHHh-hhc
Confidence 34444 489999999643322 1111 24688778877665444332211 01222222221 111
Q ss_pred CccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCC
Q 002609 671 YSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFP 750 (900)
Q Consensus 671 ~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p 750 (900)
.....++|++|||++|. .....+ ..+.|++++++||++| +|+||||+|+|++......
T Consensus 554 ~~~~~l~FLdNHDt~Rf-----~s~~~~----------------~~~~klAaall~tlpG-iP~IYYGdEiGm~gg~~g~ 611 (683)
T PRK09505 554 QDFNVLSYLSSHDTRLF-----FEGGQS----------------YAKQRRAAELLLLAPG-AVQIYYGDESARPFGPTGS 611 (683)
T ss_pred CccceeecccCCChhhh-----hhhcCc----------------hHHHHHHHHHHHhCCC-CcEEEechhhCccCCCCCC
Confidence 22346789999999753 221111 1345777888888888 6999999999997532101
Q ss_pred CCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEc----CcEEEEEeCC
Q 002609 751 MPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMR----GPLVFIFNFH 824 (900)
Q Consensus 751 ~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R----~~llvV~Nf~ 824 (900)
+|. ...+..|+|+.... ...+|++|+|+|++||++||+|+.|..... . .+.+++|.| +.++||+|-.
T Consensus 612 DP~---~~~R~~M~W~~~~~-~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l--~-~~~~~aF~R~~~~d~vlVv~~~~ 682 (683)
T PRK09505 612 DPL---QGTRSDMNWQEVSG-KSAALLAHWQKLGQFRARHPAIGAGKQTTL--S-LKQYYAFVREHGDDKVMVVWAGQ 682 (683)
T ss_pred CCc---ccccccCCcccccc-chHHHHHHHHHHHHHHhhCHHhhCCceEEe--c-cCCEEEEEEEeCCCEEEEEEeCC
Confidence 111 11356689975321 346799999999999999999999976554 2 346999999 3789998853
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=6.9e-46 Score=432.81 Aligned_cols=376 Identities=16% Similarity=0.215 Sum_probs=250.5
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCC-CCCCCCccCCCc---------ccCCCCCCHHHHHHHHHHHhhcCcEE
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKD-YFTVGYRVTNLY---------AVSSRYGTPDDFKRLVDEAHGLGLLV 485 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~-~~~wGY~~~~yf---------a~~~~yGt~~elk~LV~~aH~~GI~V 485 (900)
.+|++|+++ ||||++||||+|||+||+++.+ ..+|||++.||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~~k-ldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 367899999 9999999999999999999874 457999999999 79999999999999999999999999
Q ss_pred EEeecccccccccc--ccc-------------------c---cCC--CCC-------CccccCCCC--------------
Q 002609 486 FLDIVHSYSAADQM--VGL-------------------S---QFD--GSN-------DCYFHTGKR-------------- 518 (900)
Q Consensus 486 ILDvV~NH~~~~~~--~~l-------------------~---~fd--g~~-------~~yf~~~~~-------------- 518 (900)
|||+|+||++.+.. +.. . .|. +.. ..|++....
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999996432 110 0 000 000 012111100
Q ss_pred -CccCCCC--------------CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhh
Q 002609 519 -GFHKYWG--------------TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCN 583 (900)
Q Consensus 519 -g~~~~wg--------------~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~ 583 (900)
+....|. .++||+++|+|+++|+++++||++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 0012231 3699999999999999999999988999999999999872
Q ss_pred cccchhHHHHHHHHHHHHHhcC-CCEEEEEecCCCCCCccccccCC----CCCccccccchhHHHHHHHHccCCCCCccH
Q 002609 584 QYVDKDALLYLILANEILHALH-PNIITIAEDATYYPGLCEPTTQG----GLGFDYFLNLSASEMWLSFLENTPDHEWSM 658 (900)
Q Consensus 584 ~~~d~~a~~~l~~~~~~l~~~~-P~~ilIaE~~~~~p~l~~~~~~g----g~GFD~~~n~~~~d~~~~~lk~~~~~~~~~ 658 (900)
..||+.+...+++.. |++++|||.|.+.+........+ ...||+.+ ...+.+.+.... ...+
T Consensus 240 -------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~----~~~l~~~~~~~~--~~~l 306 (479)
T PRK09441 240 -------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPL----HYNFHEASKQGR--DYDM 306 (479)
T ss_pred -------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHH----HHHHHHHHhcCC--ccch
Confidence 246777777777665 69999999998665432221111 12344433 334444444321 1233
Q ss_pred HHHHHHhhcCCCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhC-CCceeeec
Q 002609 659 SKIVSTLVGNGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIG-GHAYLNFM 737 (900)
Q Consensus 659 ~~i~~~l~~~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~-G~~Pliy~ 737 (900)
..+..... ....+...++|++|||++|.. ..+.+. .....+++.+++||++ | +|+|||
T Consensus 307 ~~~~~~~~-~~~~~~~~~~FldNHD~~R~~-----~~~~~~--------------~~~~~~lA~a~llT~p~G-iP~IYY 365 (479)
T PRK09441 307 RNIFDGTL-VEADPFHAVTFVDNHDTQPGQ-----ALESPV--------------EPWFKPLAYALILLREEG-YPCVFY 365 (479)
T ss_pred HhhhCcch-hhcCcccceeeeccccCCCcc-----cccccc--------------cccchHHHHHHHHhCCCC-ceeeEe
Confidence 33332111 123456789999999998641 111110 0011367788899999 7 699999
Q ss_pred cccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEc---
Q 002609 738 GNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMR--- 814 (900)
Q Consensus 738 G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R--- 814 (900)
|+|+|..+.-+ ...+.+++++||+||++++ .|...... .++.+++|.|
T Consensus 366 GdE~g~~g~~~------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~~--~~~~~~~~~R~~~ 416 (479)
T PRK09441 366 GDYYGASGYYI------------------------DMPFKEKLDKLLLARKNFA---YGEQTDYF--DHPNCIGWTRSGD 416 (479)
T ss_pred ccccCCCCCcc------------------------cchHHHHHHHHHHHHHHhC---CCCeeEee--cCCCEEEEEEecC
Confidence 99999864310 1248999999999999854 45544332 3456999999
Q ss_pred ---CcEEEEEeCCCCCcccceEEecc-CCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEE
Q 002609 815 ---GPLVFIFNFHPTDSYEDYSVGVE-EAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQ 890 (900)
Q Consensus 815 ---~~llvV~Nf~~~~s~~~~~i~lp-~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~ 890 (900)
+.++||+|.+.... ..+.++.. .++.|+.++...... + .+ ...+.+.|+||++|+.
T Consensus 417 ~~~~~vvvvinn~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~------~-------~~------~~~G~~~~~l~~~s~~ 476 (479)
T PRK09441 417 EENPGLAVVISNGDAGE-KTMEVGENYAGKTWRDYTGNRQET------V-------TI------DEDGWGTFPVNGGSVS 476 (479)
T ss_pred CCCccEEEEEECCCCCc-EEEEeCccCCCCEeEhhhCCCCCe------E-------EE------CCCCeEEEEECCceEE
Confidence 25888998876532 22334322 245577665422110 0 00 1123589999999999
Q ss_pred EEE
Q 002609 891 VYK 893 (900)
Q Consensus 891 Vl~ 893 (900)
||.
T Consensus 477 i~~ 479 (479)
T PRK09441 477 VWV 479 (479)
T ss_pred EeC
Confidence 973
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=4.4e-43 Score=382.94 Aligned_cols=281 Identities=22% Similarity=0.317 Sum_probs=193.8
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
|||+||+++ |||||+||||+||||||++.+. .+|||+|+||++|+++|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHHHh-hHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 899999999 9999999999999999999876 68999999999999999999999999999999999999999999999
Q ss_pred ccccccc---ccCCCCCCcccc-C-----CC----------CCc-------cCCC-CCccccCCCHHHHHHHHHHHHHHH
Q 002609 496 ADQMVGL---SQFDGSNDCYFH-T-----GK----------RGF-------HKYW-GTRMFKYDDLDVLHFLLSNLNWWV 548 (900)
Q Consensus 496 ~~~~~~l---~~fdg~~~~yf~-~-----~~----------~g~-------~~~w-g~~~ln~~~~~vr~~lld~l~~Wl 548 (900)
.++.+.. ..++.....||. . .+ ... +..| +.++||+++++||++|+++++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 9986531 112211122221 0 00 000 1122 348999999999999999999999
Q ss_pred HhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCccc-cccC
Q 002609 549 VEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGLCE-PTTQ 627 (900)
Q Consensus 549 ~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l~~-~~~~ 627 (900)
+++|||||||++++|. ..+|+.++..+++..|++++|||.+........ ....
T Consensus 159 -~~giDGfR~D~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~ 212 (316)
T PF00128_consen 159 -EEGIDGFRLDAAKHIP-------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYD 212 (316)
T ss_dssp -HTTESEEEETTGGGSS-------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHH
T ss_pred -hceEeEEEEccccccc-------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhhc
Confidence 5669999999999872 246888888888888999999999875432111 1111
Q ss_pred CCCCccccccchhHHHHHHHHcc-CCCCCccHHHHHHHhhc---CCCCccceEeccccccccccCCCchhhhhcccccCC
Q 002609 628 GGLGFDYFLNLSASEMWLSFLEN-TPDHEWSMSKIVSTLVG---NGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEH 703 (900)
Q Consensus 628 gg~GFD~~~n~~~~d~~~~~lk~-~~~~~~~~~~i~~~l~~---~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~ 703 (900)
+..+.....++... .+...+.. .......+..+...+.. ........++|++|||+.+ +...+..
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r-----~~~~~~~----- 281 (316)
T PF00128_consen 213 GYFDLDSVFDFPDY-GLRSSFFDFWRHGDGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPR-----FASRFGN----- 281 (316)
T ss_dssp GTTSHSEEEHHHHH-HHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSST-----HHHHTTT-----
T ss_pred cccccchhhccccc-ccccchhhhhccccchhhhhhhhhhhhhhhhcccceeeeccccccccc-----chhhhcc-----
Confidence 11111111111111 12222210 11112223333322211 1223578999999999975 2332221
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCC
Q 002609 704 SPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKR 746 (900)
Q Consensus 704 ~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~ 746 (900)
...+.+++.+++|+++| +||||||+|+|+++.
T Consensus 282 ----------~~~~~~~a~~~ll~~pG-~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 282 ----------NRDRLKLALAFLLTSPG-IPMIYYGDEIGMTGS 313 (316)
T ss_dssp ----------HHHHHHHHHHHHHHSSS-EEEEETTGGGTBBTS
T ss_pred ----------cchHHHHHHHHHHcCCC-ccEEEeChhccCCCC
Confidence 11156788888999998 799999999999864
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.1e-37 Score=355.94 Aligned_cols=339 Identities=15% Similarity=0.163 Sum_probs=219.6
Q ss_pred CCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 415 ISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 415 ~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
.|.|++++++ ||||++||||+|||+|+++..+ ++||++.|||.++ ++|||.+|||+||++||++||+||||+|+||
T Consensus 40 gg~~~~i~~k-ldyL~~LGvtaIWL~P~~~s~s--~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLMGK-VDDIAAAGITHVWLPPPSHSVS--EQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCC--CCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 3789999999 9999999999999999998754 5999999999998 6999999999999999999999999999999
Q ss_pred cccccccccc---cCCC-C---CCcccc----CC------CCCc-cCCC---CCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 494 SAADQMVGLS---QFDG-S---NDCYFH----TG------KRGF-HKYW---GTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 494 ~~~~~~~~l~---~fdg-~---~~~yf~----~~------~~g~-~~~w---g~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
++.++..... .|.+ . ...|+. .+ ..+. ...+ +.++||++||+|+++|+++++||++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9976532211 1222 1 111211 00 0111 1112 3489999999999999999999988999
Q ss_pred ccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCc--ccc------
Q 002609 553 IDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGL--CEP------ 624 (900)
Q Consensus 553 VDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l--~~~------ 624 (900)
|||||||+|++|. ..|++ ..+++.+| .+++||.|...... ...
T Consensus 197 iDG~RlD~ak~~~-------------------------~~f~~---~~v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~~ 247 (428)
T PLN00196 197 FDAWRLDFAKGYS-------------------------AEVAK---VYIDGTEP-SFAVAEIWTSMAYGGDGKPEYDQNA 247 (428)
T ss_pred CCEEEeehhhhCC-------------------------HHHHH---HHHHccCC-cEEEEEEeccccccccCCccccchh
Confidence 9999999998862 11333 34566667 78999999752110 000
Q ss_pred --------ccCCCCCcc--ccccchhHHHHHHHHccCCCCCccHHHHHHHhhc-CCCCccceEeccccccccccCCCchh
Q 002609 625 --------TTQGGLGFD--YFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVG-NGQYSDKMIMYAENHNQSISGGRSFA 693 (900)
Q Consensus 625 --------~~~gg~GFD--~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~-~~~~~~~~v~Y~enHD~~~~G~~tl~ 693 (900)
+..-|..+. ..+++.........+.+ ..|.+........+ -...|..+|+|++|||+.+. .++.
T Consensus 248 ~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~--~~~~ 322 (428)
T PLN00196 248 HRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEG---ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGST--QHMW 322 (428)
T ss_pred hHHHHHHHHHhcCCccCcceeecccchHHHHHHhcC---CchhhhhhcccCcchhhcChhhceeeccCCCCccc--cccC
Confidence 000000000 00111111111112211 12222111100000 12457789999999999642 0110
Q ss_pred hhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccC
Q 002609 694 EILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLH 773 (900)
Q Consensus 694 ~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~ 773 (900)
. . .....+++.+++||++| +|+||+|+= .+|.
T Consensus 323 ----~--------~------~~~~~~lAyA~iLT~pG-~P~IyYg~~----------------------~~~~------- 354 (428)
T PLN00196 323 ----P--------F------PSDKVMQGYAYILTHPG-NPCIFYDHF----------------------FDWG------- 354 (428)
T ss_pred ----C--------C------ccchHHHHHHHHHcCCC-cceEeeCCC----------------------cCcc-------
Confidence 0 0 01123778888999988 699999931 2342
Q ss_pred chHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEcC-cEEEEEeCCCCCcccceEEeccCCCeEEEEecCC
Q 002609 774 SNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRG-PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTD 849 (900)
Q Consensus 774 ~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~-~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd 849 (900)
+.+++++|+++||++++|+.|...+...+ +.++++.|+ .++|.+|..-... + -+| ..|+.+++..
T Consensus 355 --~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~--~d~yv~~~~~~~~~~i~~~~~~~--~---~~~--~~~~~~~~g~ 420 (428)
T PLN00196 355 --LKEEIAALVSIRNRNGITPTSELRIMEAD--ADLYLAEIDGKVIVKIGSRYDVS--H---LIP--EGFQVVAHGN 420 (428)
T ss_pred --HHHHHHHHHHHHHhCCCcCCccEEEEEec--CCEEEEEECCEEEEEECCCCCcc--c---cCc--ccceEEEecC
Confidence 44689999999999999999987776543 349999995 7888998753310 0 122 3388777654
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.2e-36 Score=343.71 Aligned_cols=336 Identities=14% Similarity=0.198 Sum_probs=215.5
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
-|++++++ ||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 58999999 9999999999999999999865 49999999999999999999999999999999999999999999864
Q ss_pred ccccc---cccCCCCCCcc-----ccC-CCCCccC----CCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCccc
Q 002609 497 DQMVG---LSQFDGSNDCY-----FHT-GKRGFHK----YWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSS 563 (900)
Q Consensus 497 ~~~~~---l~~fdg~~~~y-----f~~-~~~g~~~----~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~ 563 (900)
..... .+.|.|.+..| +.. +..+... ..+.++||++||+||++|++.+++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 32111 12344421111 110 1111111 12349999999999999999999777779999999999998
Q ss_pred chhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCCCCc-----cc-----------c-cc
Q 002609 564 MIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYYPGL-----CE-----------P-TT 626 (900)
Q Consensus 564 m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p~l-----~~-----------~-~~ 626 (900)
|- ..|++...+ +..| .+++||.|.+.... .. . +.
T Consensus 184 ~~-------------------------~~f~~~~~~---~~~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~ 234 (401)
T PLN02361 184 YS-------------------------AKFVKEYIE---AAKP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWID 234 (401)
T ss_pred CC-------------------------HHHHHHHHH---hhCC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHH
Confidence 72 235555543 3345 88999999753210 00 0 00
Q ss_pred -CCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhc-CCCCccceEeccccccccccCCCchhhhhcccccCCC
Q 002609 627 -QGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVG-NGQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHS 704 (900)
Q Consensus 627 -~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~-~~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~ 704 (900)
.+| ....+++.....+.+.+.+ +-|.+.+......+ ....+.++|+|++|||..+. ...+ .
T Consensus 235 ~~~~--~~~~fDF~l~~~l~~a~~~---~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~----~~~~--~------ 297 (401)
T PLN02361 235 GTGG--LSAAFDFTTKGILQEAVKG---QWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGST----QAHW--P------ 297 (401)
T ss_pred hcCC--cceeecHHHHHHHHHHHhh---hHHHHhhhhcCCcchhhcChhhceEecccCcCcch----hhcc--C------
Confidence 000 0111122222223333311 11222111110000 12356789999999999642 1100 0
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHH
Q 002609 705 PDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELM 784 (900)
Q Consensus 705 ~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li 784 (900)
......+++.+++||.+| +|+||+|+= .+|+ ..+.+++++|+
T Consensus 298 --------~~~~~~~~AyA~iLT~pG-~P~Vyyg~~----------------------~~~~-------~~~~~~I~~Li 339 (401)
T PLN02361 298 --------FPSDHIMEGYAYILTHPG-IPTVFYDHF----------------------YDWG-------GSIHDQIVKLI 339 (401)
T ss_pred --------CchHHHHHHHHHHHCCCC-cCeEeeccc----------------------cCCC-------hHHHHHHHHHH
Confidence 001223566778888877 699999861 1232 24788999999
Q ss_pred HHHHhCcccccCCceEEeecCCCeEEEEEcCcEEEEEeCCCCCcccceEEeccCCCeEEEEecCC
Q 002609 785 KLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTD 849 (900)
Q Consensus 785 ~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd 849 (900)
+|||++++++.+...+.. .+++..+|-..+.++|=++... -+|.+..|+++.+.+
T Consensus 340 ~lRk~~~~~~~s~~~i~~-a~~~~y~a~i~~~~~~k~g~~~---------~~p~~~~~~~~~~g~ 394 (401)
T PLN02361 340 DIRKRQDIHSRSSIRILE-AQSNLYSAIIDEKLCMKIGDGS---------WCPSGREWTLATSGH 394 (401)
T ss_pred HHHHhCCCCCCCcEEEEE-ecCCeEEEEECCeEEEEecCCC---------CCCCCCCceEEEecC
Confidence 999999999999877764 3445566666666555444321 123344688776653
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=1.7e-33 Score=323.46 Aligned_cols=375 Identities=13% Similarity=0.142 Sum_probs=244.0
Q ss_pred CChhhHHHhhhh-HHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccc
Q 002609 416 SSFNEFTEKVLP-HVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYS 494 (900)
Q Consensus 416 Gt~~g~~ek~L~-yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~ 494 (900)
|+++|++++ |+ ||++| |++|||||+++.......||+|+||+.|+|+|||.+||++|++ ||+||||+|+||+
T Consensus 17 GdL~gl~~k-Ld~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NHt 89 (495)
T PRK13840 17 GGLKSLTAL-LDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNHM 89 (495)
T ss_pred CCHhHHHHH-HHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCcC
Confidence 899999999 99 59999 9999999999543225689999999999999999999999995 9999999999999
Q ss_pred ccccccccccC-CCC---CCcccc-CCC------------------CCc------------cCCCC-----CccccCCCH
Q 002609 495 AADQMVGLSQF-DGS---NDCYFH-TGK------------------RGF------------HKYWG-----TRMFKYDDL 534 (900)
Q Consensus 495 ~~~~~~~l~~f-dg~---~~~yf~-~~~------------------~g~------------~~~wg-----~~~ln~~~~ 534 (900)
|..++|+.... .|. -..||. .+. .+. ...|. .++||+.||
T Consensus 90 S~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP 169 (495)
T PRK13840 90 SAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSA 169 (495)
T ss_pred CCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCH
Confidence 99998765422 111 111221 110 000 01232 389999999
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEec
Q 002609 535 DVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAED 614 (900)
Q Consensus 535 ~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~ 614 (900)
+|+++|+++++||+ +.||||||+|++..+.... |.. .....+++.++++++..++.. +..+|+|.
T Consensus 170 ~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~-gt~-----------c~~~pe~~~~l~~lr~~~~~~--~~~ll~Ei 234 (495)
T PRK13840 170 AGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKA-GTS-----------CFMIPETFEFIDRLAKEARAR--GMEVLVEI 234 (495)
T ss_pred HHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCC-CCC-----------cCCChHHHHHHHHHHHHhhhc--CCEEEEeC
Confidence 99999999999999 7899999999998875431 210 011246788999999999876 56689998
Q ss_pred CCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEecccccccccc-------
Q 002609 615 ATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSIS------- 687 (900)
Q Consensus 615 ~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~------- 687 (900)
++.+.... .. +..+++.+|+..+..+...|.... ...+...+.. .|..+++|+.|||...+
T Consensus 235 ~~y~~~~~-~~---~~e~~~vYnF~Lp~ll~~aL~~~~-----~~~L~~~l~~---~p~~~~n~L~~HDgIgl~d~~~~~ 302 (495)
T PRK13840 235 HSYYKTQI-EI---AKKVDRVYDFALPPLILHTLFTGD-----VEALAHWLEI---RPRNAVTVLDTHDGIGIIDVGADD 302 (495)
T ss_pred ccccCccc-cc---cccccEEecchhhHHHHHHHHhCC-----chHHHHHHHh---CCCccEEeeecCCCCCcccccccc
Confidence 76332111 11 124666777777776666554432 2233333321 25566899999999654
Q ss_pred ----CCCc------hhhhhcccc----------cCCCCC-----ch--hhhhhhhHHHHHHHHHHHHhCCCceeeecccc
Q 002609 688 ----GGRS------FAEILFGEI----------SEHSPD-----TN--NLLLRGCSLHKMIRLITFTIGGHAYLNFMGNE 740 (900)
Q Consensus 688 ----G~~t------l~~~l~~~~----------~~~~~~-----~~--~~~~r~~~l~kma~li~ltl~G~~Pliy~G~E 740 (900)
|--+ +...+.+.. .+...+ +. +.+.+.-.+..++++++|+++| +|+||||+|
T Consensus 303 ~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~G-iP~iY~~~l 381 (495)
T PRK13840 303 RGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPG-IPQVYYVGL 381 (495)
T ss_pred cccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCC-cceeeechh
Confidence 1000 011111000 000000 10 1111222345677889999998 599999999
Q ss_pred ccCCCCCCCC-CCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEcC--cE
Q 002609 741 FGHPKRVEFP-MPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRG--PL 817 (900)
Q Consensus 741 fG~~~~~d~p-~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~--~l 817 (900)
+|..+..+.- +.+.+...++..++|+..+......+++-.++||++|+++|+|+... .+...+++.-+|.+..+ ..
T Consensus 382 l~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~-~~~~~~~~~~~~~~~~~~~~~ 460 (495)
T PRK13840 382 LAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAF-SYAADGDTSLTLSWTAGDSSA 460 (495)
T ss_pred hccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceE-EEecCCCCeEEEEEecCCceE
Confidence 9987643211 12344555566778876665445669999999999999999995433 33322333333343333 45
Q ss_pred EEEEeCCCC
Q 002609 818 VFIFNFHPT 826 (900)
Q Consensus 818 lvV~Nf~~~ 826 (900)
.+.+|+...
T Consensus 461 ~~~~~~~~~ 469 (495)
T PRK13840 461 SLTLDFAPK 469 (495)
T ss_pred EEEEEcccc
Confidence 666677654
No 31
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=329.78 Aligned_cols=389 Identities=21% Similarity=0.295 Sum_probs=229.9
Q ss_pred ceEEEEecCccCCC--------CCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHH
Q 002609 399 LRIYECHVGISGSK--------PKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDD 470 (900)
Q Consensus 399 ~vIYE~hV~~~~~~--------~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~e 470 (900)
.+||++.++.|... .+.||++|++++ ||||++|||++|||+||++.+ ..++||++.||+.+++.|||.++
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~aiwl~Pi~~s~-~~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDAIWLSPIFESP-QADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCEEEeCCCCCCC-ccCCCccccchhhcCcccCCHHH
Confidence 47999999766432 356999999999 999999999999999999996 35799999999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEeecccccccccccccccCCC-CC----CccccCC-------C-------CCc-----------
Q 002609 471 FKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDG-SN----DCYFHTG-------K-------RGF----------- 520 (900)
Q Consensus 471 lk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg-~~----~~yf~~~-------~-------~g~----------- 520 (900)
|++||++||++||+||||+|+||++..+.+....... .+ .+|.... . .+.
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 9999999999999999999999999998765432211 11 2222110 0 000
Q ss_pred -cCCC-CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHH
Q 002609 521 -HKYW-GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILAN 598 (900)
Q Consensus 521 -~~~w-g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~ 598 (900)
|... ..++||+.+++||+.+++.++||++ +||||||+|++++|.... +.. .......++..+.
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~-------------~~~~~~~~~~~~~ 223 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP-------------PSEENLTFLEEIH 223 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC-------------CcccccccHHHHH
Confidence 0011 1268999999999999999999995 999999999999874211 100 0001111222333
Q ss_pred HHHHhcCCCEEEEEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCC--------CCCccHHHHHHHhhcC--
Q 002609 599 EILHALHPNIITIAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTP--------DHEWSMSKIVSTLVGN-- 668 (900)
Q Consensus 599 ~~l~~~~P~~ilIaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~--------~~~~~~~~i~~~l~~~-- 668 (900)
+.++...+.++..++.+........ ...++...+......-...+.... ........+...+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (505)
T COG0366 224 EYLREENPDVLIYGEAITDVGEAPG-----AVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPL 298 (505)
T ss_pred HHHHHHHHHHHhcCcceeeeecccc-----ccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHh
Confidence 3333333333332222210000000 000000000000000000000000 0001111222111110
Q ss_pred --CCCccceEeccccccccccCCCchhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCC
Q 002609 669 --GQYSDKMIMYAENHNQSISGGRSFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKR 746 (900)
Q Consensus 669 --~~~~~~~v~Y~enHD~~~~G~~tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~ 746 (900)
.........|..|||+.+. ..+..+... +.....++++.++++++| +|+||+|+|.|++..
T Consensus 299 ~~~~~~~~~~~~~~~hD~~r~-----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g-~p~iy~G~e~g~~~~ 361 (505)
T COG0366 299 AVNLNDGWNNLFLSNHDQPRL-----LSRFGDDVG-----------GRDASAKLLAALLFLLPG-TPFIYYGDELGLTNF 361 (505)
T ss_pred hhccccCchhhhhhhcCccce-----eeeccCCcc-----------chHHHHHHHHHHHHhCCC-CcEEecccccCCCCC
Confidence 0112233447899999753 111111110 111334666667777777 699999999999875
Q ss_pred CCCCCC-----------CCCCcccccccccc---------------------------ccc--cccCchHHHHHHHHHHH
Q 002609 747 VEFPMP-----------SNNFSFSLANRHWD---------------------------LLA--NRLHSNLYSFDQELMKL 786 (900)
Q Consensus 747 ~d~p~~-----------~nn~s~~~~~~~W~---------------------------~~~--~~~~~~l~~f~r~Li~L 786 (900)
.+.+.. .......+..++|+ ... +....+++.++++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~ 441 (505)
T COG0366 362 KDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIAL 441 (505)
T ss_pred CCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHH
Confidence 432100 00111234556666 110 11245799999999999
Q ss_pred HHhCccc-ccCCceEEeecCCCeEEEEEcC----cEEEEEeCCCC
Q 002609 787 DENAKVL-LRGSPSVHHVNDAKMVICYMRG----PLVFIFNFHPT 826 (900)
Q Consensus 787 Rk~~paL-~~g~~~i~~~~~~~~Vlaf~R~----~llvV~Nf~~~ 826 (900)
|+.+..+ ..+...+........+++|.|. .++|++|++..
T Consensus 442 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 486 (505)
T COG0366 442 RKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEE 486 (505)
T ss_pred HHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCCc
Confidence 9998544 4564555555556679999995 38999999976
No 32
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3e-33 Score=319.60 Aligned_cols=373 Identities=13% Similarity=0.135 Sum_probs=241.0
Q ss_pred CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecc
Q 002609 412 KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVH 491 (900)
Q Consensus 412 ~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~ 491 (900)
.++.|++.+++++ ||++ ||++|||||++++++ ++||+|+||++|+|+|||.+||++|+++ |+||+|+|+
T Consensus 13 g~glgdl~g~l~~---yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~ 81 (470)
T TIGR03852 13 GKNLKELNKVLEN---YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMI 81 (470)
T ss_pred CCChhhHHHHHHH---HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcc
Confidence 3567888888876 9999 799999999998874 6999999999999999999999999998 899999999
Q ss_pred cccccccccccccCCC--C--CCcccc-C-----C--C-----------C------------Cc-cCCC-----CCcccc
Q 002609 492 SYSAADQMVGLSQFDG--S--NDCYFH-T-----G--K-----------R------------GF-HKYW-----GTRMFK 530 (900)
Q Consensus 492 NH~~~~~~~~l~~fdg--~--~~~yf~-~-----~--~-----------~------------g~-~~~w-----g~~~ln 530 (900)
||||..++|+.....+ . -..||. . + + + +. ...| +.++||
T Consensus 82 NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN 161 (470)
T TIGR03852 82 NHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLD 161 (470)
T ss_pred cccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccC
Confidence 9999999887543322 1 112232 0 0 0 0 00 0012 238999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEE
Q 002609 531 YDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIIT 610 (900)
Q Consensus 531 ~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~il 610 (900)
+.||+|+++|.++++||+ +.||||||+|+++.+.... |-.. .....+++.++++++..+ ..|++++
T Consensus 162 ~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~-Gt~c----------~~l~pet~~~l~~~r~~~--~~~~~~l 227 (470)
T TIGR03852 162 VTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKL-GTND----------FFVEPEIWELLDEVRDIL--APTGAEI 227 (470)
T ss_pred CCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccC-CCCc----------ccCChhHHHHHHHHHHHh--ccCCCEE
Confidence 999999999999999999 7999999999999885432 2110 011246788899998877 5679999
Q ss_pred EEecCCCCCCccccccCCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhcCCCCccceEecccccccccc---
Q 002609 611 IAEDATYYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGNGQYSDKMIMYAENHNQSIS--- 687 (900)
Q Consensus 611 IaE~~~~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~~~~~~~~v~Y~enHD~~~~--- 687 (900)
|+|.+..+..... . |..-.+.+++..+--++..+... +...+..-+.. .+...++|+.|||.-.+
T Consensus 228 l~E~~~~~~~~~~---~-gde~~mvY~F~lppl~l~al~~~-----~~~~l~~wl~~---~p~~~~nfL~sHDgigl~~~ 295 (470)
T TIGR03852 228 LPEIHEHYTIQFK---I-AEHGYYVYDFALPMLVLYSLYSG-----KTNRLADWLRK---SPMKQFTTLDTHDGIGVVDV 295 (470)
T ss_pred EeHhhhhcccccc---c-ccceeEEccCccchhhHHHhhcc-----CHHHHHHHHHh---CcccceEEeecCCCCCCccc
Confidence 9998643322110 0 11222334444444333333221 23344444431 12234699999999543
Q ss_pred -CC---C---chhhhhc--ccccCC---CC---Cch---------hhhhhhhHHHHHHHHHHHHhCCCceeeeccccccC
Q 002609 688 -GG---R---SFAEILF--GEISEH---SP---DTN---------NLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGH 743 (900)
Q Consensus 688 -G~---~---tl~~~l~--~~~~~~---~~---~~~---------~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~ 743 (900)
|- + .+...+. +..+.. .. +.. +.+.+...+..++++|+|+++| +|.||+|.|+|.
T Consensus 296 ~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpG-iP~iYy~~llg~ 374 (470)
T TIGR03852 296 KDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPG-IPQVYYVGLLAG 374 (470)
T ss_pred cccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCC-CceEEechhhcC
Confidence 10 0 1112221 111111 00 000 1222233455677899999999 599999999999
Q ss_pred CCCCCCC-CCCCCCccccccccccccc--cccCchHHHHHHHHHHHHHhCccccc-CCceEEeecCCCeEEEEEcC----
Q 002609 744 PKRVEFP-MPSNNFSFSLANRHWDLLA--NRLHSNLYSFDQELMKLDENAKVLLR-GSPSVHHVNDAKMVICYMRG---- 815 (900)
Q Consensus 744 ~~~~d~p-~~~nn~s~~~~~~~W~~~~--~~~~~~l~~f~r~Li~LRk~~paL~~-g~~~i~~~~~~~~Vlaf~R~---- 815 (900)
....+-+ +.+.+.. +++-.|+..+ .+....+..-..+||++|+++|+|+. +...+ ...++.|+++.|+
T Consensus 375 ~nD~~~~~rt~~~R~--Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~~~~~~~~~r~~~~~ 450 (470)
T TIGR03852 375 KNDIELLEETKEGRN--INRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETPSENQIEIVRTNKDG 450 (470)
T ss_pred CchHHHHHhcCCCCC--CCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCCCCcEEEEEEEcCCC
Confidence 7755322 1122222 4555555432 11223355555669999999999987 55443 3556679999982
Q ss_pred --cEEEEEeCCCC
Q 002609 816 --PLVFIFNFHPT 826 (900)
Q Consensus 816 --~llvV~Nf~~~ 826 (900)
.+++++|++..
T Consensus 451 ~~~~~~~~n~~~~ 463 (470)
T TIGR03852 451 GNKAILTANLKTK 463 (470)
T ss_pred CceEEEEEecCCC
Confidence 68999999986
No 33
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=2.2e-31 Score=306.69 Aligned_cols=452 Identities=10% Similarity=0.076 Sum_probs=278.5
Q ss_pred CceEEEEecCccCCCCCCCChhhHH-HhhhhHHHHcCcceEEEeeeeec---------CCCCCCCCccCCCcccCCCCCC
Q 002609 398 SLRIYECHVGISGSKPKISSFNEFT-EKVLPHVKEAGYNVIQLFGVVEH---------KDYFTVGYRVTNLYAVSSRYGT 467 (900)
Q Consensus 398 ~~vIYE~hV~~~~~~~~~Gt~~g~~-ek~L~yLk~LGvn~I~LmPv~e~---------~~~~~wGY~~~~yfa~~~~yGt 467 (900)
..+=..+++.+....++..-+..+. +.+.+||++|||++|||+|++++ +.. ..||+++| |.|+|+|||
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~-D~gyDi~d-~~Idp~~GT 128 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSI-DGNFDRIS-FDIDPLLGS 128 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCC-CCCCCccc-CccCcccCC
Confidence 4456666666554333333344443 34689999999999999999999 543 57999999 599999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccccccccccC-CCCCCccc------------cCC--CC--------------
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQF-DGSNDCYF------------HTG--KR-------------- 518 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~f-dg~~~~yf------------~~~--~~-------------- 518 (900)
.+||++||++||++||+||+|+|+||||..++..+..- ++.-..|| ..+ +.
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999986222111 12212222 100 00
Q ss_pred ------------------C-ccCCC------------------------CCccccCCCHH--HHHHHH-HHHHHHHHhcC
Q 002609 519 ------------------G-FHKYW------------------------GTRMFKYDDLD--VLHFLL-SNLNWWVVEYQ 552 (900)
Q Consensus 519 ------------------g-~~~~w------------------------g~~~ln~~~~~--vr~~ll-d~l~~Wl~eyg 552 (900)
+ ....| +.++||+.||. |++.|+ +++++|+ +.|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-Hhc
Confidence 0 00112 34799999999 999999 8999999 899
Q ss_pred ccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHH--hcCCCEEEEEecCCCCCCccccccCCCC
Q 002609 553 IDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILH--ALHPNIITIAEDATYYPGLCEPTTQGGL 630 (900)
Q Consensus 553 VDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~--~~~P~~ilIaE~~~~~p~l~~~~~~gg~ 630 (900)
+||||+|++..|+-. .|-. ...-.+++.+++.+++.+. ..+|+.++++|.-- .|.....+.. +
T Consensus 288 ~~GfRLDAvpfLg~e-~~~~-----------~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g-~- 352 (688)
T TIGR02455 288 ARGLRLDANGFLGVE-RRAE-----------GTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSH-G- 352 (688)
T ss_pred cccceeccccceeee-cCCC-----------CCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhC-C-
Confidence 999999999887532 1110 0001246678889999998 88999999999643 2333333332 3
Q ss_pred CccccccchhHHHHHHHHccCCCCCccHHHHHHHhhcC---CCCccceEeccccccccccC-------------------
Q 002609 631 GFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVGN---GQYSDKMIMYAENHNQSISG------------------- 688 (900)
Q Consensus 631 GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~~---~~~~~~~v~Y~enHD~~~~G------------------- 688 (900)
|.|+.+++-.+..+...|... +...+...|... .-...+.+.++.|||+....
T Consensus 353 ~~dl~~dF~t~p~~~~AL~tg-----da~pLr~~L~~~~~~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~ 427 (688)
T TIGR02455 353 GADLSYDFITRPAYHHALLTG-----DTEFLRLMLKEMHAFGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQT 427 (688)
T ss_pred CcceeecccccHHHHHHHHcC-----CHHHHHHHHHhhhcCCCCchhhhhhccCccccchhhhhhccccccccccccccc
Confidence 666666665444443333321 122333333221 11456789999999995321
Q ss_pred ------C----CchhhhhcccccCCCCCc-------hh--------hh-------hhhhHHHHHHHHHHHH----hCCCc
Q 002609 689 ------G----RSFAEILFGEISEHSPDT-------NN--------LL-------LRGCSLHKMIRLITFT----IGGHA 732 (900)
Q Consensus 689 ------~----~tl~~~l~~~~~~~~~~~-------~~--------~~-------~r~~~l~kma~li~lt----l~G~~ 732 (900)
. +.+..++.+......|.. .. .+ +......+++.+++++ ++| +
T Consensus 428 ~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG-~ 506 (688)
T TIGR02455 428 LPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPG-V 506 (688)
T ss_pred CCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCC-c
Confidence 0 011223333221111111 00 01 1122234556667777 777 6
Q ss_pred eeeecc--------------ccccCCCCCCCCCCCCCCc-----------c-ccccccccccccc--cCchHHHHHHHHH
Q 002609 733 YLNFMG--------------NEFGHPKRVEFPMPSNNFS-----------F-SLANRHWDLLANR--LHSNLYSFDQELM 784 (900)
Q Consensus 733 Pliy~G--------------~EfG~~~~~d~p~~~nn~s-----------~-~~~~~~W~~~~~~--~~~~l~~f~r~Li 784 (900)
|+|++| +|+|+-...-.++.+..-. + -..+.-+..++.. ...++.+++++|+
T Consensus 507 p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il 586 (688)
T TIGR02455 507 FALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKIL 586 (688)
T ss_pred eEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHH
Confidence 999999 9999765332222111000 0 0011111122111 4578999999999
Q ss_pred HHHHhCcccccCCceEEeecCCCeEEEEEcC------cEEEEEeCCCCCcccceEEecc--CCCeEEEEecCCCcccCCc
Q 002609 785 KLDENAKVLLRGSPSVHHVNDAKMVICYMRG------PLVFIFNFHPTDSYEDYSVGVE--EAGEYQIILNTDESKFGGQ 856 (900)
Q Consensus 785 ~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~------~llvV~Nf~~~~s~~~~~i~lp--~~G~w~~vl~sd~~~~gG~ 856 (900)
+.|++++++..+...+. ......|+++.++ .+|+|.||+.++. ..+|.++ .++....+++.... +
T Consensus 587 ~vR~~~~i~~~~~~~~~-~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~--~~~l~l~~~~~~~~~dl~~~~~~--~-- 659 (688)
T TIGR02455 587 AVRQAYDIAASKQILIP-DVQAPGLLVMVHELPAGKGIQITALNFGADAI--AEEICLPGFAPGPVVDIIHESVE--G-- 659 (688)
T ss_pred HHHHhCCcccCceeeec-CCCCCcEEEEEEEcCCCCceEEEeeccCCCCe--eeEEeccccCCCCceeccCCCcc--C--
Confidence 99999999988865544 2345679999872 4899999998743 2344443 23445555443221 0
Q ss_pred ccccccccceeeeeccccCcceeEEEEEcCcEEEEEEEcc
Q 002609 857 GLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLSR 896 (900)
Q Consensus 857 g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~~~ 896 (900)
.+ .......|+|+++....|..+.
T Consensus 660 -~~---------------~~~~~~~i~L~~y~~~wl~~~~ 683 (688)
T TIGR02455 660 -DL---------------TDDCELMINLDPYEALALRIVN 683 (688)
T ss_pred -Cc---------------CCCceeEEEecCcceEEEEecc
Confidence 00 0123578999999999987653
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.2e-31 Score=317.66 Aligned_cols=188 Identities=24% Similarity=0.287 Sum_probs=136.6
Q ss_pred ceEEEEecCccC-CCCCCCC-hhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHH
Q 002609 399 LRIYECHVGISG-SKPKISS-FNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVD 476 (900)
Q Consensus 399 ~vIYE~hV~~~~-~~~~~Gt-~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~ 476 (900)
...||+.+..|- ..+..|. |++++++ ||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||+
T Consensus 499 ~~~~eVmlQgF~Wds~~dg~w~~~I~ek-ldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI~ 575 (894)
T PLN02784 499 GSGFEILCQGFNWESHKSGRWYMELGEK-AAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLVK 575 (894)
T ss_pred cCCceEEEEeEEcCcCCCCchHHHHHHH-HHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHHH
Confidence 446666664332 1111233 7899998 9999999999999999998764 599999999999999999999999999
Q ss_pred HHhhcCcEEEEeeccccccccccc--c-cccCCCCC----------CccccC-CCCCccCCC-CCccccCCCHHHHHHHH
Q 002609 477 EAHGLGLLVFLDIVHSYSAADQMV--G-LSQFDGSN----------DCYFHT-GKRGFHKYW-GTRMFKYDDLDVLHFLL 541 (900)
Q Consensus 477 ~aH~~GI~VILDvV~NH~~~~~~~--~-l~~fdg~~----------~~yf~~-~~~g~~~~w-g~~~ln~~~~~vr~~ll 541 (900)
+||++||+||+|+|+||++..... + .+.|.+.- ...|.. +.......| +.++||+++|+||+.|.
T Consensus 576 a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~ 655 (894)
T PLN02784 576 SFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLK 655 (894)
T ss_pred HHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHH
Confidence 999999999999999999854211 1 11222210 001110 000011122 34899999999999999
Q ss_pred HHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 002609 542 SNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAEDATYY 618 (900)
Q Consensus 542 d~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~ 618 (900)
+.++||++++||||||||+|+++. ..| +++.+++.+| .+++||.|++.
T Consensus 656 ~WlkWL~~e~G~DGfRLDaVKgf~-------------------------~~F---vkeyv~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 656 EWLCWMRKEVGYDGWRLDFVRGFW-------------------------GGY---VKDYMEASEP-YFAVGEYWDSL 703 (894)
T ss_pred HHHHHHHhccCCCEEEEeccCCCC-------------------------HHH---HHHHHhccCC-cEEEEEecccc
Confidence 999999999999999999997641 011 2334445555 79999999863
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.6e-30 Score=302.15 Aligned_cols=165 Identities=24% Similarity=0.393 Sum_probs=134.8
Q ss_pred CCceEEEEecCccCC--CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHH
Q 002609 397 KSLRIYECHVGISGS--KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRL 474 (900)
Q Consensus 397 ~~~vIYE~hV~~~~~--~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~L 474 (900)
+..+|||+-++.|.. ..+.|+++|+++| |+|||+||+|+|||+||++.+.. ++||++.||+.++|+|||.++|++|
T Consensus 16 ~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~taiWisP~~~s~~~-~~GY~~~d~~~l~p~fGt~edf~~L 93 (545)
T KOG0471|consen 16 KTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTAIWLSPFTKSSKP-DFGYDASDLEQLRPRFGTEEDFKEL 93 (545)
T ss_pred hcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCceEEeCCCcCCCHH-HhccCccchhhhcccccHHHHHHHH
Confidence 567899999998865 4567999999999 99999999999999999999875 7999999999999999999999999
Q ss_pred HHHHhhcCcEEEEeecccccccccccccccCCCCCC---ccccCCCC----------------------Cc----cCCC-
Q 002609 475 VDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSND---CYFHTGKR----------------------GF----HKYW- 524 (900)
Q Consensus 475 V~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~---~yf~~~~~----------------------g~----~~~w- 524 (900)
|+++|++||.+|+|+|.||++..++|+......... .|...+.. .. ...|
T Consensus 94 i~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l 173 (545)
T KOG0471|consen 94 ILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYL 173 (545)
T ss_pred HHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceec
Confidence 999999999999999999999877665432222111 11111100 00 0111
Q ss_pred -----CCccccCCCHHHHHHHHHHHH-HHHHhcCccEEEecCcccc
Q 002609 525 -----GTRMFKYDDLDVLHFLLSNLN-WWVVEYQIDGFQFHSLSSM 564 (900)
Q Consensus 525 -----g~~~ln~~~~~vr~~lld~l~-~Wl~eygVDGFRfD~~~~m 564 (900)
..+++|+++|+|++.|.+.++ +|+ ++||||||+|+++++
T Consensus 174 ~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~ 218 (545)
T KOG0471|consen 174 GQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGY 218 (545)
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccc
Confidence 237999999999999999999 887 899999999999876
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.95 E-value=2.8e-26 Score=275.01 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=78.1
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+||.+++++ ||||++||||+|||+||+++....+|||+++||+.+++.|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~~~-L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAAAL-LPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHHHh-hHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 799999998 9999999999999999999877778999999999999999999999999999999999999999999999
Q ss_pred cc
Q 002609 496 AD 497 (900)
Q Consensus 496 ~~ 497 (900)
.+
T Consensus 92 ~~ 93 (825)
T TIGR02401 92 VH 93 (825)
T ss_pred cc
Confidence 76
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.89 E-value=2e-21 Score=234.36 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=78.4
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+||.+++++ ||||++||||+|||+||++.....+|||++.||+.+++.||+.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~~~-l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAAEL-VPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHHHH-hHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 689999998 9999999999999999999876678999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 002609 496 ADQ 498 (900)
Q Consensus 496 ~~~ 498 (900)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 764
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=99.85 E-value=2.3e-21 Score=195.68 Aligned_cols=84 Identities=31% Similarity=0.457 Sum_probs=79.6
Q ss_pred CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCC--CCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 412 KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY--FTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 412 ~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~--~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
..+.|||++++++ |+||++||||+|||+||++++.. .+|||+++||++++++|||++||++||++||++||+||||+
T Consensus 12 ~~~~G~~~gi~~~-l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 12 GDGGGDLQGIIEK-LDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CCCCcCHHHHHHH-HHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3457999999999 99999999999999999999864 68999999999999999999999999999999999999999
Q ss_pred ccccccc
Q 002609 490 VHSYSAA 496 (900)
Q Consensus 490 V~NH~~~ 496 (900)
|+||++.
T Consensus 91 V~NH~~~ 97 (166)
T smart00642 91 VINHTSD 97 (166)
T ss_pred CCCCCCC
Confidence 9999997
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.9e-19 Score=190.07 Aligned_cols=374 Identities=18% Similarity=0.218 Sum_probs=220.3
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCC----CCCC--CccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY----FTVG--YRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~----~~wG--Y~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
++.+++.++-..|.--|+-.||+.|++|+.-. .-|. |+|.+ |.++.|-|..+||+.||..|.+-|.|+++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 57788888888999999999999999997532 2343 99999 58999999999999999999999999999999
Q ss_pred ccccccccccc-------c------ccCCCCCC--ccccCCC-C---CccCCC------------CCccccCCCHHHHHH
Q 002609 491 HSYSAADQMVG-------L------SQFDGSND--CYFHTGK-R---GFHKYW------------GTRMFKYDDLDVLHF 539 (900)
Q Consensus 491 ~NH~~~~~~~~-------l------~~fdg~~~--~yf~~~~-~---g~~~~w------------g~~~ln~~~~~vr~~ 539 (900)
+||++.....| . .+|-|.+. .=|+.+. + ....+| |..+||-++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 99998532111 1 12333211 1133311 1 111222 336889999999999
Q ss_pred HHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCC-------CEEEEE
Q 002609 540 LLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHP-------NIITIA 612 (900)
Q Consensus 540 lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P-------~~ilIa 612 (900)
|++-|.+.+ +.||-|||.|+++||.-. + +..+-..|+.++- ..+++-
T Consensus 197 ive~L~hLi-dlGVAGFRvDAsKHMwp~---------D----------------i~~I~~~l~nLnsD~f~s~srpfi~q 250 (504)
T KOG2212|consen 197 IAEYLNHLI-DIGVAGFRVDASKHMWPG---------D----------------IKAILDKLHNLNSDWFPSGSKPFIYQ 250 (504)
T ss_pred HHHHHHHHH-HhccceeeechhhccChH---------H----------------HHHHHHHHhhcccccccCCCCceehh
Confidence 999999999 899999999999999321 1 1122223333332 234444
Q ss_pred ecCC-CCCCccccccCCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhc-CCCCccceEeccccccccccCCC
Q 002609 613 EDAT-YYPGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVG-NGQYSDKMIMYAENHNQSISGGR 690 (900)
Q Consensus 613 E~~~-~~p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~-~~~~~~~~v~Y~enHD~~~~G~~ 690 (900)
|..+ +-..+.+. ..-|+| ..-++.+.+.+-..+++... +..+..-=.+ ......+.++|++|||+.|-...
T Consensus 251 EVID~GgE~v~~~-dY~g~G--~~TeF~f~~~ig~~~r~~~~----~kyL~nwG~~wGf~~s~~~L~FvDNHDNQR~~ga 323 (504)
T KOG2212|consen 251 EVIDLGGEPIKSS-DYFGNG--RVTEFKFGAKLGTVIRKWNK----MKYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGA 323 (504)
T ss_pred hhhhcCCceeecc-cccCCc--eeeeeechHHHHHHHhcchh----HHHHHhcCCccCcCCCcceEEEeccCcccccCCC
Confidence 4332 11111111 111222 12233333444444444322 1111110000 12345689999999999752110
Q ss_pred chhhhhcccccCCCCCchhhhhhhhHHHHHHHHHHHHhCCCceeeeccccccCCCCCCCCCCCCCC--------cccccc
Q 002609 691 SFAEILFGEISEHSPDTNNLLLRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNF--------SFSLAN 762 (900)
Q Consensus 691 tl~~~l~~~~~~~~~~~~~~~~r~~~l~kma~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~--------s~~~~~ 762 (900)
.-+..|. .+..+..||+..++|+.+=+.|=+..---|-...+. |.+.|+. +...|.
T Consensus 324 gga~Vlt--------------YK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~--PP~~~~~~i~SP~Fn~D~tC~ 387 (504)
T KOG2212|consen 324 GGASVLT--------------YKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWV--PPPNNNGVIKSPTFNPDTTCG 387 (504)
T ss_pred CcceEEE--------------ecchhhhhhhhhhheecccCcchhheeeeeecCCCC--CCCCCCcceecceeCCCCccc
Confidence 0001110 133457899999999888435655444444433332 1111111 111122
Q ss_pred ccccccccccCchHHHHHHHHHHHHHhCcccccCCceEEeecCCCeEEEEEcC-cEEEEEeCCCCCcccceEEeccCCCe
Q 002609 763 RHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRG-PLVFIFNFHPTDSYEDYSVGVEEAGE 841 (900)
Q Consensus 763 ~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~~~~~~~~Vlaf~R~-~llvV~Nf~~~~s~~~~~i~lp~~G~ 841 (900)
--|-.. | -..-++.|..+|.+- .+.+...+.+.+..-|+|.|+ +-++++|...-.-...+..+|| +|+
T Consensus 388 ~GWvCE----H--RWrqI~~Mv~FrnAV----~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LP-AGt 456 (504)
T KOG2212|consen 388 NGWVCE----H--RWRQIRNMVNFRNAV----DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLP-AGT 456 (504)
T ss_pred Cceeee----c--hHHHHHHHHhhhhhc----CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCC-CCc
Confidence 233221 1 134468899998653 233333344666778999996 7888888776533345667785 799
Q ss_pred EEEEecCCCc
Q 002609 842 YQIILNTDES 851 (900)
Q Consensus 842 w~~vl~sd~~ 851 (900)
|..+++.+..
T Consensus 457 YCDviSG~~~ 466 (504)
T KOG2212|consen 457 YCDVISGDKI 466 (504)
T ss_pred eeeeeccccc
Confidence 9999987543
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.74 E-value=1.1e-17 Score=154.50 Aligned_cols=47 Identities=32% Similarity=0.765 Sum_probs=43.7
Q ss_pred ccCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcc
Q 002609 130 VEHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILED 181 (900)
Q Consensus 130 ~~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~ 181 (900)
++++++||+|||+|++|+|+||||+|+..++||+ +++.|+|+++||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~-----k~~~G~W~~~i~~ 49 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLK-----KDEFGVWEITIPP 49 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccE-----ECCCCEEEEEECC
Confidence 5678999999999999999999999999999996 7889999999987
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.71 E-value=2.5e-15 Score=171.30 Aligned_cols=303 Identities=20% Similarity=0.309 Sum_probs=195.5
Q ss_pred CCCeEEeCCc-eEEEEEcCCCC-------cEEEEeecCCCC------CC-----ceeeeeeecCc-cEEEEEeCCCC---
Q 002609 282 NLPYDVIDNG-KDYDVFNVASD-------PRWQEKFRSKEP------PI-----PYWLETRKGRK-AWLKKYTPGIP--- 338 (900)
Q Consensus 282 ~lpa~~~~~g-~~F~l~sp~a~-------~V~l~l~~~~~~------~~-----~~~~~~~~~~~-vW~~~~v~~~~--- 338 (900)
.|+|++.+|| |.|-.|.|.-. .|.|.+|...++ .. +-.+++.+.+. .| ..+.|+.
T Consensus 27 rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~W--gVv~GlraGt 104 (811)
T PF14872_consen 27 RLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHW--GVVAGLRAGT 104 (811)
T ss_pred HhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceee--ehhhccCCCC
Confidence 5889999999 89999999866 899999976431 11 12345555444 66 3355655
Q ss_pred ---CCCEEEEEEECCCCCeee-cCCcccccccCCCCCCceeEecCCCc------cccc-ccc-----CC-CCCCCCCceE
Q 002609 339 ---HGSKYRVYFNTPDGPLER-IPAWATYVQPDADGKEAFAIHWEPSP------EFAY-KWR-----NT-RPKVPKSLRI 401 (900)
Q Consensus 339 ---~g~~Y~y~v~~~~g~~~~-~dpya~~~~~~~~~~~~~~~~~~p~~------~~~~-~w~-----~~-~p~~p~~~vI 401 (900)
.|+.|-.+-...+|++.. .||-|.++- .|.-..+-.++-.. +-.| .=. ++ -+..+.+..|
T Consensus 105 r~q~GsfYwLry~d~~~~~~~I~DpLaySlP---yGvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~P~nI 181 (811)
T PF14872_consen 105 RDQAGSFYWLRYRDQDGEVQIIRDPLAYSLP---YGVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPAPRNI 181 (811)
T ss_pred cccccceEEEEEccCCCCeEEecccccccCc---ccccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCCCcee
Confidence 456787766665676533 377665541 12111111111100 0001 000 11 1345677889
Q ss_pred EEEecCccCCCCCCCChhhHHHhhhhHHHH---------------cCcceEEEeeeeecC--------------------
Q 002609 402 YECHVGISGSKPKISSFNEFTEKVLPHVKE---------------AGYNVIQLFGVVEHK-------------------- 446 (900)
Q Consensus 402 YE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~---------------LGvn~I~LmPv~e~~-------------------- 446 (900)
-++||++.|++ ||++|+++- -..|.+ .||++||||||-...
T Consensus 182 LQiHv~TAsp~---GtlaGLT~i-yqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~ 257 (811)
T PF14872_consen 182 LQIHVGTASPE---GTLAGLTRI-YQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDE 257 (811)
T ss_pred EEEecCCCCCC---cchHHHHHH-HHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeeccccc
Confidence 99999999887 899998863 344432 799999999984321
Q ss_pred -----------------------CCCCCCCccC--CCcccCCC-CCC--HHHHHHHHHHHhh---cCcEEEEeecccccc
Q 002609 447 -----------------------DYFTVGYRVT--NLYAVSSR-YGT--PDDFKRLVDEAHG---LGLLVFLDIVHSYSA 495 (900)
Q Consensus 447 -----------------------~~~~wGY~~~--~yfa~~~~-yGt--~~elk~LV~~aH~---~GI~VILDvV~NH~~ 495 (900)
..-+|||++. ..=|++|. ++| |+||-+||.++|. ..|.||+|+||.|+-
T Consensus 258 ~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHAD 337 (811)
T PF14872_consen 258 DELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHAD 337 (811)
T ss_pred ccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeeccccc
Confidence 0127999964 33345544 333 9999999999998 579999999999998
Q ss_pred cccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccC
Q 002609 496 ADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLT 575 (900)
Q Consensus 496 ~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~ 575 (900)
.....-++ ..|+..+ +..| .++|+.+|.||..|++.-|.=+ .+|+||+|+|++...-+. .+.+
T Consensus 338 NQ~~~LLn------~~flkGP-----nMYG-Qdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDFk~f----nplt 400 (811)
T PF14872_consen 338 NQALDLLN------RRFLKGP-----NMYG-QDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDFKFF----NPLT 400 (811)
T ss_pred chhhHhhh------hhhccCC-----cccc-ccccccChHHHHHHHHHHHhhc-ccCCceeEecccccceee----cccc
Confidence 76543332 2344321 1122 4789999999999999999888 899999999998653221 1112
Q ss_pred CChhhhhhcccchhHHHHHHHHHHHHHhcCCC---EEEEEecCCCCC
Q 002609 576 GDLEEYCNQYVDKDALLYLILANEILHALHPN---IITIAEDATYYP 619 (900)
Q Consensus 576 g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~---~ilIaE~~~~~p 619 (900)
+.. ..| -.||..+..++..+.+. .++|-|+-..+|
T Consensus 401 ~~v------e~D---D~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP 438 (811)
T PF14872_consen 401 GRV------EYD---DAYLLAMSDVVQEIGGARRLPFTIFEDGRPWP 438 (811)
T ss_pred ccc------ccc---hHHHHHHHHHHhhccccceeEEEEecCCCcCC
Confidence 110 001 24788889988888654 688999865555
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.61 E-value=9.4e-16 Score=195.55 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=83.3
Q ss_pred ceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHH
Q 002609 399 LRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEA 478 (900)
Q Consensus 399 ~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~a 478 (900)
..+|-++... .+||.+++++ ||||++||||+||||||++.....+|||+++||+.+++.|||.++|++||++|
T Consensus 744 ~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFHK------DFTFADAEAI-LPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 4477777643 2799999998 99999999999999999998666789999999999999999999999999999
Q ss_pred hhcCcEEEEeeccccccc
Q 002609 479 HGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 479 H~~GI~VILDvV~NH~~~ 496 (900)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999994
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.40 E-value=9.8e-13 Score=121.85 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCeEEeCCceEEEEEcCCCCcEEEEeecCCCC-CCceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECCCC-CeeecCC
Q 002609 283 LPYDVIDNGKDYDVFNVASDPRWQEKFRSKEP-PIPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTPDG-PLERIPA 359 (900)
Q Consensus 283 lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~-~~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~~g-~~~~~dp 359 (900)
|+|++.++|++|+||||+|++|+|+||++... .....++|.+ .+|+| ++.++++.+|..|+|+|++.++ ..+.+||
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw-~~~v~~~~~g~~Y~y~i~~~~~~~~~~~DP 79 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDDQDKVLETVQMKRGENGVW-SVTLDGDLEGYYYLYEVKVYKGETNEVVDP 79 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCCCCCcceeEeeecCCCCEE-EEEeCCccCCcEEEEEEEEeceEEEEEcCc
Confidence 56888999999999999999999999986542 2223577877 55677 9999999999999999987633 3578999
Q ss_pred cccccccC
Q 002609 360 WATYVQPD 367 (900)
Q Consensus 360 ya~~~~~~ 367 (900)
||+++..+
T Consensus 80 yA~~~~~~ 87 (100)
T cd02860 80 YAKALSAN 87 (100)
T ss_pred ccEeEeeC
Confidence 99999874
No 44
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.38 E-value=2.2e-12 Score=120.19 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeec-CccEEEEEeCCCCCCCEEEEEEEC---------CC
Q 002609 282 NLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKG-RKAWLKKYTPGIPHGSKYRVYFNT---------PD 351 (900)
Q Consensus 282 ~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~-~~vW~~~~v~~~~~g~~Y~y~v~~---------~~ 351 (900)
+|+|+++++|++|+||||+|++|+|+||++... ...++|++. +|+| ++.++++.+|..|+|+|++ .+
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~~--~~~~~m~~~~~GvW-~~~v~~~~~g~~Y~y~i~g~~~p~~~~~~~ 77 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDGS--ETRLPLTEEYGGVW-HGFLPGIKAGQRYGFRVHGPYDPERGLRFN 77 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCCC--EEEEEcccccCCEE-EEEECCCCCCCEEEEEECCccCcccCcccC
Confidence 478999999999999999999999999976432 335678764 5677 9999999999999999987 23
Q ss_pred CCeeecCCccccccc
Q 002609 352 GPLERIPAWATYVQP 366 (900)
Q Consensus 352 g~~~~~dpya~~~~~ 366 (900)
...+.+||||+.+..
T Consensus 78 ~~~~~~DPYA~~~~~ 92 (103)
T cd02856 78 PAKLLLDPYARALDG 92 (103)
T ss_pred CCeEEecCCcceEcC
Confidence 335678999999864
No 45
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.27 E-value=4.2e-12 Score=158.05 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=77.5
Q ss_pred CCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCC----CHHHHHHHHHHHhhc-CcEEEEee
Q 002609 415 ISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYG----TPDDFKRLVDEAHGL-GLLVFLDI 489 (900)
Q Consensus 415 ~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yG----t~~elk~LV~~aH~~-GI~VILDv 489 (900)
.|+|.+..++ |+||++||||.||||||++-.. .++.|++.||+.++|.|| +.++|++||+++|+. ||+||+|+
T Consensus 128 mG~~~~w~~~-L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWEPR-LRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHHHH-HHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3899888877 9999999999999999997654 468999999999999995 889999999999997 99999999
Q ss_pred cccccccccccc
Q 002609 490 VHSYSAADQMVG 501 (900)
Q Consensus 490 V~NH~~~~~~~~ 501 (900)
|+|||+.++.|.
T Consensus 206 V~NHTa~ds~Wl 217 (1464)
T TIGR01531 206 VFNHTANNSPWL 217 (1464)
T ss_pred eecccccCCHHH
Confidence 999999998654
No 46
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=3.7e-12 Score=148.10 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=76.4
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
||....+. ||||++|||.|++++||+.......|||||+|...|+|.+|+.+.|.+||.++|++||.+|+|||+||++-
T Consensus 17 tF~~A~~~-l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADARAL-LDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHHHh-hHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 67787776 99999999999999999999888899999999999999999999999999999999999999999999987
Q ss_pred c
Q 002609 497 D 497 (900)
Q Consensus 497 ~ 497 (900)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 6
No 47
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.27 E-value=1.7e-11 Score=117.13 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=64.8
Q ss_pred CeEEeCCceEEEEEcCCCCcEEEEeecCCCC-CCceeeeeee----cCccEEEEEeCCCCCCCEEEEEEEC----CCCC-
Q 002609 284 PYDVIDNGKDYDVFNVASDPRWQEKFRSKEP-PIPYWLETRK----GRKAWLKKYTPGIPHGSKYRVYFNT----PDGP- 353 (900)
Q Consensus 284 pa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~-~~~~~~~~~~----~~~vW~~~~v~~~~~g~~Y~y~v~~----~~g~- 353 (900)
+|+++++|++|+||||+|++|+|+||++... .....++|.+ .+|+| ++.++++.+|..|+|+|++ ..|.
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW-~~~v~~~~~g~~Y~y~v~g~~~p~~g~~ 79 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGDGDEPALEIELDPSVNRTGDVW-HVFVEGLKPGQLYGYRVDGPFEPEQGHR 79 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCCCCCceEEEeCcCcccccCCEE-EEEECCCCCCCEEEEEECCCCCCCcccc
Confidence 3678889999999999999999999986432 2223566754 25788 9999999999999999985 2332
Q ss_pred e----eecCCcccccccC
Q 002609 354 L----ERIPAWATYVQPD 367 (900)
Q Consensus 354 ~----~~~dpya~~~~~~ 367 (900)
. ..+||||+.+...
T Consensus 80 ~~~~~~~~DPYA~a~~~~ 97 (119)
T cd02852 80 FDPSKVLLDPYAKAVSGD 97 (119)
T ss_pred cCCCcEEECCCcCeEcCc
Confidence 2 3789999998654
No 48
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.25 E-value=6.4e-12 Score=112.49 Aligned_cols=72 Identities=36% Similarity=0.600 Sum_probs=62.2
Q ss_pred cceEEecc-CeEEEEEecCCceEEEEEeecCC-CCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 124 VGMHRNVE-HRVDFMDWAPGARYCALVGDFNG-WSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 124 ~G~~~~~~-~~~~~~ewap~a~~~~l~Gdfn~-W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
||+|..++ ++++|++|||+|++|.|+++||+ |+...++|. .+++.|+|+++||.++.+|. ++|+|.+
T Consensus 2 lG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~----~~~~~G~w~~~~~~~~~~g~-------~~Y~y~i 70 (85)
T PF02922_consen 2 LGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMT----RKDDDGVWEVTVPGDLPPGG-------YYYKYRI 70 (85)
T ss_dssp SEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEE----EECTTTEEEEEEEGCGTTTT--------EEEEEE
T ss_pred cCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEee----ecCCCCEEEEEEcCCcCCCC-------EEEEEEE
Confidence 89999876 88999999999999999999999 999999995 15999999999996688874 4899999
Q ss_pred ccCCC
Q 002609 202 DYDKG 206 (900)
Q Consensus 202 ~~~~~ 206 (900)
+.+.+
T Consensus 71 ~~~~g 75 (85)
T PF02922_consen 71 DGDDG 75 (85)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 87763
No 49
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.21 E-value=2.6e-11 Score=108.59 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCCeEEeCC--ceEEEEEcCCCCcEEEEeecCCCCCCceeeeee-e-cCccEEEEEeC-CCCCC-CEEEEEEECCCCC-e
Q 002609 282 NLPYDVIDN--GKDYDVFNVASDPRWQEKFRSKEPPIPYWLETR-K-GRKAWLKKYTP-GIPHG-SKYRVYFNTPDGP-L 354 (900)
Q Consensus 282 ~lpa~~~~~--g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~-~-~~~vW~~~~v~-~~~~g-~~Y~y~v~~~~g~-~ 354 (900)
||+|+++++ +++|+||||+|++|+|+++... ......++|+ + .+|+| ++.++ .+.+| .+|+|+|+..+|+ .
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~-~~~~~~~~m~~~~~~G~w-~~~~~~~~~~g~~~Y~y~i~~~~g~~~ 78 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG-SWPAEEYPMTRKDDDGVW-EVTVPGDLPPGGYYYKYRIDGDDGETP 78 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT-SSEEEEEEEEEECTTTEE-EEEEEGCGTTTT-EEEEEEEETTTEEE
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee-cCCCceEEeeecCCCCEE-EEEEcCCcCCCCEEEEEEEEeCCCcEE
Confidence 578999987 8999999999999999999887 2223446676 3 56677 99999 67777 5999999988754 5
Q ss_pred eecCCcc
Q 002609 355 ERIPAWA 361 (900)
Q Consensus 355 ~~~dpya 361 (900)
+++||||
T Consensus 79 ~~~DPYA 85 (85)
T PF02922_consen 79 EVVDPYA 85 (85)
T ss_dssp EET-TT-
T ss_pred EEeCCCC
Confidence 6789997
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.19 E-value=7.8e-11 Score=109.71 Aligned_cols=60 Identities=35% Similarity=0.669 Sum_probs=49.2
Q ss_pred HhhhccccceEEecc---CeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCC-CceEEEEEcc
Q 002609 117 FSTGYEIVGMHRNVE---HRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDD-YGYWFIILED 181 (900)
Q Consensus 117 fa~~~~~~G~~~~~~---~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~-~g~w~~~~p~ 181 (900)
.++.|+.||+|..++ ++++|+.|||+|++|.|++|||+|+...++|. +.+ .|+|+++||.
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~-----~~~~~G~w~~~v~~ 66 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMR-----RRGDSGVWELFIPG 66 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecE-----ECCCCCEEEEEECC
Confidence 567899999998664 67999999999999999999999987777875 433 7777776643
No 51
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.18 E-value=4.6e-11 Score=109.36 Aligned_cols=89 Identities=37% Similarity=0.694 Sum_probs=70.8
Q ss_pred eEEeecCCCeEEEEEcCc-----EEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccc
Q 002609 799 SVHHVNDAKMVICYMRGP-----LVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRV 873 (900)
Q Consensus 799 ~i~~~~~~~~Vlaf~R~~-----llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~ 873 (900)
|+...+.+++|+||.|.. ++||+||+++....+|++++|.+|+|+++++|++..|||.+...... + ....
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~~-v----~~~~ 75 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSGE-V----TVDS 75 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETSE-E----EEET
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCce-E----EEee
Confidence 466677888999999953 99999999985678899999999999999999999999987632221 1 1223
Q ss_pred cCcceeEEEEEcCcEEEEEEEc
Q 002609 874 DGLRNCIEVPLPSRTAQVYKLS 895 (900)
Q Consensus 874 ~~~~~~~~l~LP~rsa~Vl~~~ 895 (900)
+| .++|+|||++++||+.+
T Consensus 76 ~g---~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 76 NG---RITVTLPPYSALVLKLK 94 (95)
T ss_dssp TS---EEEEEESTTEEEEEEEE
T ss_pred CC---EEEEEECCCEEEEEEEc
Confidence 33 48999999999999875
No 52
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.12 E-value=6.4e-11 Score=142.68 Aligned_cols=72 Identities=31% Similarity=0.564 Sum_probs=62.7
Q ss_pred hhhccccceEEec---cCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhh
Q 002609 118 STGYEIVGMHRNV---EHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYF 194 (900)
Q Consensus 118 a~~~~~~G~~~~~---~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~ 194 (900)
-+.|+.||+|... ..+|+|++|||+|++|+|+||||+|+++.|||+ +.+.|+|+++||+ +.+|+
T Consensus 121 ~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~-----~~~~GVWelfipg-~~~G~------- 187 (730)
T PRK12568 121 QALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMR-----QRIGGFWELFLPR-VEAGA------- 187 (730)
T ss_pred hhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecc-----cCCCCEEEEEECC-CCCCC-------
Confidence 3679999999753 347999999999999999999999999999997 6699999999998 78888
Q ss_pred hhccccccc
Q 002609 195 QQYNYVDDY 203 (900)
Q Consensus 195 ~~~~~~~~~ 203 (900)
.|+|.+..
T Consensus 188 -~YKYeI~~ 195 (730)
T PRK12568 188 -RYKYAITA 195 (730)
T ss_pred -EEEEEEEc
Confidence 67777653
No 53
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.05 E-value=8.7e-10 Score=99.12 Aligned_cols=71 Identities=10% Similarity=0.163 Sum_probs=57.5
Q ss_pred eEEeC-CceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCCCCCEEEEEEECCCCCeeecCCccc
Q 002609 285 YDVID-NGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIPHGSKYRVYFNTPDGPLERIPAWAT 362 (900)
Q Consensus 285 a~~~~-~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~~g~~Y~y~v~~~~g~~~~~dpya~ 362 (900)
|++.+ +|++|+||||+|++|+|+||+. . .++|.+ .+|+| ++.++++ +|..|+|+|. +.....||||+
T Consensus 2 a~~~~~~~~~F~vwAP~A~~V~l~l~~~--~----~~~m~~~~~G~W-~~~v~~~-~g~~Y~y~v~---~~~~~~DP~a~ 70 (85)
T cd02853 2 ARPLGAGGTRFRLWAPDAKRVTLRLDDG--E----EIPMQRDGDGWF-EAEVPGA-AGTRYRYRLD---DGTPVPDPASR 70 (85)
T ss_pred CeEcCCCCEEEEEeCCCCCEEEEEecCC--C----cccCccCCCcEE-EEEeCCC-CCCeEEEEEC---CCcCCCCCccc
Confidence 67777 7999999999999999999861 1 245665 56677 9999999 9999999996 33467899999
Q ss_pred cccc
Q 002609 363 YVQP 366 (900)
Q Consensus 363 ~~~~ 366 (900)
+...
T Consensus 71 ~~~~ 74 (85)
T cd02853 71 FQPE 74 (85)
T ss_pred cCCC
Confidence 8543
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.91 E-value=1.6e-09 Score=96.82 Aligned_cols=54 Identities=33% Similarity=0.638 Sum_probs=46.7
Q ss_pred eEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 133 RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 133 ~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
.|+|+.|||+|+.|+|+||||+|+ .++|+ +++.|.|+++|| |.+|+ | +|+|++|
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~-----~~~~G~w~~~~~--l~~G~----y---~Ykf~vd 56 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPME-----REGDGLWVVTVE--LRPGR----Y---EYKFVVD 56 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCE-----ECCCCcEEEEEe--CCCCc----E---EEEEEEC
Confidence 589999999999999999999997 56885 778899999995 56665 4 8999986
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.87 E-value=2.6e-09 Score=131.34 Aligned_cols=75 Identities=35% Similarity=0.604 Sum_probs=64.7
Q ss_pred HHhhhccccceEEec---cCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCC-CCceEEEEEcccccCCCCCcc
Q 002609 116 EFSTGYEIVGMHRNV---EHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHD-DYGYWFIILEDKLREGEKPDE 191 (900)
Q Consensus 116 ~fa~~~~~~G~~~~~---~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~-~~g~w~~~~p~~~~~~~~~~~ 191 (900)
+..+.|+.||+|... .++|+||+|||+|++|+|+||||+|++..+||+ +. +.|+|+++||+ +.+|.
T Consensus 112 ~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~-----~~~~~Gvw~~~i~~-~~~g~---- 181 (726)
T PRK05402 112 THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMR-----LRGESGVWELFIPG-LGEGE---- 181 (726)
T ss_pred ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCCccccce-----EcCCCCEEEEEeCC-CCCCC----
Confidence 456789999999875 367999999999999999999999999889996 65 89999999998 66776
Q ss_pred hhhhhcccccccC
Q 002609 192 LYFQQYNYVDDYD 204 (900)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (900)
.|+|.++.+
T Consensus 182 ----~Y~y~v~~~ 190 (726)
T PRK05402 182 ----LYKFEILTA 190 (726)
T ss_pred ----EEEEEEeCC
Confidence 778877754
No 56
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.81 E-value=5e-09 Score=94.32 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=47.6
Q ss_pred ccCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 130 VEHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 130 ~~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
++++++|++|||+|++|+|+|+||+|. .++|+ +++.|+|++++++ |..|. | +|+|++|
T Consensus 4 ~~~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~-----~~~~G~W~~~v~~-l~~g~----Y---~Y~~~vd 61 (85)
T cd02858 4 ADRTVTFRLFAPKANEVQVRGSWGGAG--SHPMT-----KDEAGVWSVTTGP-LAPGI----Y---TYSFLVD 61 (85)
T ss_pred CCCcEEEEEECCCCCEEEEEeecCCCc--cEeCe-----ECCCeEEEEEECC-CCCcE----E---EEEEEEC
Confidence 456799999999999999999999764 57885 8889999999965 44432 3 8888887
No 57
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.59 E-value=1.4e-07 Score=85.19 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCcccccCCceEEe--ecCCCeEEEEEc----CcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcc
Q 002609 779 FDQELMKLDENAKVLLRGSPSVHH--VNDAKMVICYMR----GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESK 852 (900)
Q Consensus 779 f~r~Li~LRk~~paL~~g~~~i~~--~~~~~~Vlaf~R----~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~ 852 (900)
|||+||+||++||+|+.+...... ...++.++++.| +.++|++||++++ +.++....++.++.++...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~~------~~~~~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDEP------VTVPEGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-------EEEETSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCCc------EEccCCCCCeEEEcCCCcc
Confidence 799999999999999998544332 134556888888 3899999999973 3343445677777765432
Q ss_pred cCCcccccccccceeeeeccccCcceeEEEEEcCcEEEEE
Q 002609 853 FGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVY 892 (900)
Q Consensus 853 ~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl 892 (900)
.+ ..++|||++++||
T Consensus 75 ~~-------------------------~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AG-------------------------GAGTLPPWSVVVL 89 (89)
T ss_dssp E---------------------------EEEE-TTEEEEE
T ss_pred cc-------------------------cCceECCCEEEEC
Confidence 21 1688999999986
No 58
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.44 E-value=3.7e-06 Score=93.63 Aligned_cols=189 Identities=17% Similarity=0.220 Sum_probs=102.3
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecC-CCCCCCCccCCCcccCCCCC--CHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHK-DYFTVGYRVTNLYAVSSRYG--TPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~-~~~~wGY~~~~yfa~~~~yG--t~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+-+.+.+ +|+.|+++|+|+|.+-=..... .|.| -+.|...+....... +-+-|+.||++||++||+|.-=+.++.
T Consensus 17 ~~~~~~~-~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQIDE-MLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3344454 5999999999999653221100 0111 111111111111111 257899999999999999998885544
Q ss_pred cccccccccccCCCCCCccccCCCCCcc----CCCC-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhcc
Q 002609 494 SAADQMVGLSQFDGSNDCYFHTGKRGFH----KYWG-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH 568 (900)
Q Consensus 494 ~~~~~~~~l~~fdg~~~~yf~~~~~g~~----~~wg-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~ 568 (900)
.+.... .....++.++.....+.. ...+ ..-||-++|+||+||++.++--++.|.|||+.||-.-.. ...
T Consensus 95 ~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDVS----HILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCchh----hhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 332210 010011111111111111 1112 246899999999999999999999999999999943211 111
Q ss_pred CCccccC-CChhhhhh-----cccc-------hhHH-HHHHHHHHHHHhcCCCEEEEE
Q 002609 569 NGFASLT-GDLEEYCN-----QYVD-------KDAL-LYLILANEILHALHPNIITIA 612 (900)
Q Consensus 569 ~g~~~~~-g~~~~~~~-----~~~d-------~~a~-~~l~~~~~~l~~~~P~~ilIa 612 (900)
.|+...+ ..|..+.+ ...| .+.+ .|.+.+...+++++|++.+=.
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~si 227 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSI 227 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 2322110 01222221 0111 1222 467788889999999876544
No 59
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.43 E-value=3.4e-07 Score=84.82 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=53.2
Q ss_pred cceEEeccCeEEEEEecCCceEEEEEeecCCCCC----CCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccc
Q 002609 124 VGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSP----TENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNY 199 (900)
Q Consensus 124 ~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~----~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~ 199 (900)
+|++... +++.|+.|||+|++|.|+. |++|+. ..+||. +.+.|+|+++||+ +.+|. .|+|
T Consensus 1 lGa~~~~-~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~-----~~~~gvw~~~v~~-~~~g~--------~Y~y 64 (100)
T cd02860 1 LGAVYTP-EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMK-----RGENGVWSVTLDG-DLEGY--------YYLY 64 (100)
T ss_pred CCCEEeC-CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeee-----cCCCCEEEEEeCC-ccCCc--------EEEE
Confidence 6888865 5699999999999999999 999972 345774 7899999999997 56666 6888
Q ss_pred ccccC
Q 002609 200 VDDYD 204 (900)
Q Consensus 200 ~~~~~ 204 (900)
.++.+
T Consensus 65 ~i~~~ 69 (100)
T cd02860 65 EVKVY 69 (100)
T ss_pred EEEEe
Confidence 88754
No 60
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.41 E-value=4.7e-07 Score=103.00 Aligned_cols=83 Identities=24% Similarity=0.406 Sum_probs=73.0
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCC------HHHHHHHHHHHh-hcCcEEEEe
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGT------PDDFKRLVDEAH-GLGLLVFLD 488 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt------~~elk~LV~~aH-~~GI~VILD 488 (900)
|.|..-.+. |+.++++|||.|++.|+++.... +.-|.+.|....++.+.. .+++++||.+++ +.||.+|.|
T Consensus 19 G~~~~W~~~-l~~~~~~GYNmIHftPlq~~G~S-~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 19 GPFSDWEKH-LKVISEKGYNMIHFTPLQERGES-NSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CCHhHHHHH-HHHHHHcCCcEEEecccccCCCC-CCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 788887776 99999999999999999998653 357999999999998765 479999999996 699999999
Q ss_pred eccccccccccc
Q 002609 489 IVHSYSAADQMV 500 (900)
Q Consensus 489 vV~NH~~~~~~~ 500 (900)
||+|||+.++.|
T Consensus 97 vV~NHtA~nS~W 108 (423)
T PF14701_consen 97 VVLNHTANNSPW 108 (423)
T ss_pred EeeccCcCCChH
Confidence 999999999854
No 61
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.38 E-value=4.7e-07 Score=84.40 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=52.7
Q ss_pred cceEEeccCeEEEEEecCCceEEEEEeecCCCC-CCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 124 VGMHRNVEHRVDFMDWAPGARYCALVGDFNGWS-PTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 124 ~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~-~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
||++.. ++++.|+.|||+|++|.|+. |++++ ...++|. +.+.|+|+++||+ +.+|. .|+|.+|
T Consensus 2 lGa~~~-~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~-----~~~~GvW~~~v~~-~~~g~--------~Y~y~i~ 65 (103)
T cd02856 2 LGATLD-GEGCNFAVHSENATRIELCL-FDEDGSETRLPLT-----EEYGGVWHGFLPG-IKAGQ--------RYGFRVH 65 (103)
T ss_pred CccEEe-CCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcc-----cccCCEEEEEECC-CCCCC--------EEEEEEC
Confidence 788876 56699999999999999999 77775 4456774 7789999999998 55676 7899887
Q ss_pred c
Q 002609 203 Y 203 (900)
Q Consensus 203 ~ 203 (900)
-
T Consensus 66 g 66 (103)
T cd02856 66 G 66 (103)
T ss_pred C
Confidence 5
No 62
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=98.25 E-value=1.2e-06 Score=77.80 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=44.3
Q ss_pred eEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 133 RVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 133 ~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
.|+|+-.+ +|+.|+|+|+||+|++ ..||+ +.+.| |+++++ |++|. .+|+|++|
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~-----~~~~~-~~~~~~--L~~g~-------y~YkF~Vd 55 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-KIPLE-----KSGKG-FSATLR--LPPGK-------YQYKFIVD 55 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-cccce-----ECCCC-cEEEEE--cCCCC-------EEEEEEEC
Confidence 37787777 9999999999999987 67996 77777 999993 77776 49999987
No 63
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.23 E-value=2e-06 Score=77.32 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=48.0
Q ss_pred ceEEeccCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 125 GMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 125 G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
|+...++++++|+.|||+|++|.|+... | ...+|. +.+.|+|++++++ + +|. .|.|.++
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~--~--~~~~m~-----~~~~G~W~~~v~~-~-~g~--------~Y~y~v~ 59 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD--G--EEIPMQ-----RDGDGWFEAEVPG-A-AGT--------RYRYRLD 59 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC--C--CcccCc-----cCCCcEEEEEeCC-C-CCC--------eEEEEEC
Confidence 5666665779999999999999999753 3 356774 7889999999998 5 777 6888887
No 64
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.22 E-value=5.8e-06 Score=74.45 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcEEEEeecCCCCCCceeeeeeecCccEEEEEeCCCCCC-CEEEEEEECCCCCeeecCCccccccc
Q 002609 290 NGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRKGRKAWLKKYTPGIPHG-SKYRVYFNTPDGPLERIPAWATYVQP 366 (900)
Q Consensus 290 ~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g-~~Y~y~v~~~~g~~~~~dpya~~~~~ 366 (900)
+.+.|+||||.|++|.|.++.... ..++|++.+++||++.++.+..| ++|+|.+ +| ....||+++....
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~----~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~v---dg-~~~~DP~s~~~~~ 75 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGA----GSHPMTKDEAGVWSVTTGPLAPGIYTYSFLV---DG-VRVIDPSNPTTKP 75 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCC----ccEeCeECCCeEEEEEECCCCCcEEEEEEEE---CC-eEecCCCCCceee
Confidence 468999999999999999986421 13568775444449999766665 4667766 34 4568998776543
No 65
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.19 E-value=1.1e-05 Score=78.59 Aligned_cols=121 Identities=22% Similarity=0.248 Sum_probs=79.6
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL 502 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l 502 (900)
++.+++||++|+|+|.+..--- +.|-|-|+.-...++.++ .+-|+++|++||++||+|+.=+-++ .-..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~----- 71 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDED----- 71 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChH-----
Confidence 3468999999999998754111 113366777666777777 7889999999999999999766554 1111
Q ss_pred ccCCCCCCccccCCCCCc--------cCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEec
Q 002609 503 SQFDGSNDCYFHTGKRGF--------HKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFH 559 (900)
Q Consensus 503 ~~fdg~~~~yf~~~~~g~--------~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD 559 (900)
.++ .++.|+..+.+|. ...|...++| .+ -+++++..++--++.|.+|||=||
T Consensus 72 -~~~-~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n--s~-Y~e~~~~~i~Ei~~~y~~DGiF~D 131 (132)
T PF14871_consen 72 -AAE-RHPEWFVRDADGRPMRGERFGYPGWYTCCLN--SP-YREFLLEQIREILDRYDVDGIFFD 131 (132)
T ss_pred -HHH-hCCceeeECCCCCCcCCCCcCCCCceecCCC--cc-HHHHHHHHHHHHHHcCCCCEEEec
Confidence 111 1223333333332 1123223333 34 458999999999989999999998
No 66
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.04 E-value=8.4e-06 Score=71.63 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=47.8
Q ss_pred CeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCC
Q 002609 132 HRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDK 205 (900)
Q Consensus 132 ~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (900)
++++|+.|||+|++|.|+++||+| ...+||. +...|+|++.|+.. . |..+ .|+|.++-..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~-----~~~~g~w~~~v~~~-~----~~~~---~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMT-----KVEDGYWEVELPLP-S----PGKY---QYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCE-----ECCCceEEEEEcCC-C----CCCe---EEEEEEeCCC
Confidence 469999999999999999999995 3567885 77789999999762 1 2333 7999988543
No 67
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.02 E-value=0.00022 Score=84.19 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=34.0
Q ss_pred CCCCChh-hHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcc
Q 002609 413 PKISSFN-EFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYA 460 (900)
Q Consensus 413 ~~~Gt~~-g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa 460 (900)
-++|+|. ++.+ .++.+++.|.+.|||+|+....... ..|++.+=|+
T Consensus 20 ~GiGDfg~dl~~-~id~~~~~G~~~~qilPl~~~~~~~-SPY~~~S~~a 66 (497)
T PRK14508 20 YGIGDFGKGAYE-FIDFLAEAGQSYWQILPLGPTGYGD-SPYQSFSAFA 66 (497)
T ss_pred CCCcchHHHHHH-HHHHHHHcCCCEEEEcCCCCCCCCC-CCcCcccccc
Confidence 4689996 7765 5999999999999999999855322 2555544444
No 68
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.02 E-value=9.4e-06 Score=77.65 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=49.0
Q ss_pred ceEEeccCeEEEEEecCCceEEEEEeecCCCCCC----CcccccCCccCCC---CceEEEEEcccccCCCCCcchhhhhc
Q 002609 125 GMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPT----ENCAREGHLGHDD---YGYWFIILEDKLREGEKPDELYFQQY 197 (900)
Q Consensus 125 G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~----~~~~~~~~~~~~~---~g~w~~~~p~~~~~~~~~~~~~~~~~ 197 (900)
|++..+ +++.|+.|||+|++|.|+. |++|+.. ..+| .+.+ .|+|+++||+ +.+|. .|
T Consensus 1 Ga~~~~-~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m-----~~~~~~~~gvW~~~v~~-~~~g~--------~Y 64 (119)
T cd02852 1 GATIDA-GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIEL-----DPSVNRTGDVWHVFVEG-LKPGQ--------LY 64 (119)
T ss_pred CCeEeC-CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeC-----cCcccccCCEEEEEECC-CCCCC--------EE
Confidence 667655 5699999999999999999 9999732 2344 3554 6999999998 66676 68
Q ss_pred cccccc
Q 002609 198 NYVDDY 203 (900)
Q Consensus 198 ~~~~~~ 203 (900)
+|.++-
T Consensus 65 ~y~v~g 70 (119)
T cd02852 65 GYRVDG 70 (119)
T ss_pred EEEECC
Confidence 888873
No 69
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.83 E-value=3.5e-05 Score=90.50 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred CceEEEEecCc--cCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCC-------CCCccCCCccc----CCC
Q 002609 398 SLRIYECHVGI--SGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFT-------VGYRVTNLYAV----SSR 464 (900)
Q Consensus 398 ~~vIYE~hV~~--~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~-------wGY~~~~yfa~----~~~ 464 (900)
+-||||-+--+ |-..+.--|..-|++. .+-+|++|||..||-|-+-+..+++ -||.-+|=|.+ ...
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~N-a~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptK 642 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKN-ADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTK 642 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHT-HHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BT
T ss_pred cchhhccccccccCCCChHHHHHHHHHHh-HHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCC
Confidence 55999987643 2112222455677777 8999999999999999998877654 48887775543 457
Q ss_pred CCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 465 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 465 yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
|||.+||+..|+++|+.||.||-|+|++-..
T Consensus 643 YGs~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 643 YGSVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp TB-HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CCCHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 9999999999999999999999999988654
No 70
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.00025 Score=80.96 Aligned_cols=178 Identities=19% Similarity=0.142 Sum_probs=104.8
Q ss_pred hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCc--cCCCcccCCCC--------CCHHHHHHHHHHHhhcCcEEEEe
Q 002609 419 NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYR--VTNLYAVSSRY--------GTPDDFKRLVDEAHGLGLLVFLD 488 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~--~~~yfa~~~~y--------Gt~~elk~LV~~aH~~GI~VILD 488 (900)
.++.+. |+.|+.||+|+|..-=... ||. ++. .++.+.+ +.-|=|..+|++||++||+|+--
T Consensus 64 ~el~~~-ld~l~~ln~NTv~~qV~~~-------G~~lypS~-~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aW 134 (418)
T COG1649 64 QELKDI-LDDLQKLNFNTVYPQVWND-------GDALYPSA-VLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAW 134 (418)
T ss_pred HHHHHH-HHHHHHcCCceeEEEEecC-------cccccccc-ccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeec
Confidence 355555 9999999999997543222 221 111 1222222 23477999999999999999988
Q ss_pred eccccccccccccccc-CC----C-CCCccccCCCCCccCCC-CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 489 IVHSYSAADQMVGLSQ-FD----G-SNDCYFHTGKRGFHKYW-GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 489 vV~NH~~~~~~~~l~~-fd----g-~~~~yf~~~~~g~~~~w-g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
+-+--++......... -. + ...-|.. |..| ...-||-.+|+|+++|.+.+---++.|.|||..||--
T Consensus 135 f~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 135 FNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVR------HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred hhhcccCCCCChhHhhCCCCcccCCCCeEEEe------cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 8776666543111000 00 0 1111211 2333 3456899999999999999999999999999999964
Q ss_pred ccchhccCCccccCCChhhhhh---cccchh---------HHHHHHHHHHHHHhcCCCEEEEE
Q 002609 562 SSMIYTHNGFASLTGDLEEYCN---QYVDKD---------ALLYLILANEILHALHPNIITIA 612 (900)
Q Consensus 562 ~~m~~~~~g~~~~~g~~~~~~~---~~~d~~---------a~~~l~~~~~~l~~~~P~~ilIa 612 (900)
-.+. .+.|+..-.-.+..+-. ...+.+ .-.++..++..+++++|++++=.
T Consensus 209 fy~~-~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~sv 270 (418)
T COG1649 209 FYYP-IPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSV 270 (418)
T ss_pred eccc-CccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 3311 11121110000111111 011111 23577888999999999976644
No 71
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=97.81 E-value=2.5e-05 Score=94.74 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=53.9
Q ss_pred ccceEEeccCeEEEEEecCCceEEEEEeecCCCCCC----CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcc
Q 002609 123 IVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPT----ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYN 198 (900)
Q Consensus 123 ~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~----~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~ 198 (900)
.||+|...+ ++.|++|||+|++|+|++ ||+|+.. ..||. +...|+|+++||+ +.+|. .|.
T Consensus 11 ~lG~~~~~~-~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~-----~~~~gvw~~~i~~-~~~g~--------~Y~ 74 (605)
T TIGR02104 11 ELGAVYTPE-KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMK-----RGENGVWSAVLEG-DLHGY--------FYT 74 (605)
T ss_pred CCccEEECC-eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecc-----cCCCCEEEEEECC-CCCCC--------EEE
Confidence 799998654 599999999999999997 9999754 45664 7888999999997 55666 677
Q ss_pred cccccC
Q 002609 199 YVDDYD 204 (900)
Q Consensus 199 ~~~~~~ 204 (900)
|.++.+
T Consensus 75 y~v~~~ 80 (605)
T TIGR02104 75 YQVCIN 80 (605)
T ss_pred EEEEcC
Confidence 877653
No 72
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.72 E-value=0.00013 Score=63.99 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCC-CCCEEEEEEECCCC
Q 002609 290 NGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIP-HGSKYRVYFNTPDG 352 (900)
Q Consensus 290 ~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~-~g~~Y~y~v~~~~g 352 (900)
.+++|+||||.|++|.|+++.... . ..++|.+ .+|+| ++.++... .+..|+|++.+..+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~--~~~~~~~~~~g~w-~~~v~~~~~~~~~Y~~~v~~~~~ 64 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-T--QLIPMTKVEDGYW-EVELPLPSPGKYQYKYVLDGGKG 64 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-C--CcccCEECCCceE-EEEEcCCCCCCeEEEEEEeCCCC
Confidence 589999999999999999997541 1 1355665 45677 99999988 89999999976543
No 73
>PLN02635 disproportionating enzyme
Probab=97.63 E-value=0.00072 Score=80.20 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=38.7
Q ss_pred EecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCC---CCCCCCccCC
Q 002609 404 CHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKD---YFTVGYRVTN 457 (900)
Q Consensus 404 ~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~---~~~wGY~~~~ 457 (900)
+|+-+.-..-++|+|...+.+.++.+++.|.+.+||+|+..... ..+..|++.+
T Consensus 34 l~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 34 LHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred EccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 45544434567899998776679999999999999999977532 2334455544
No 74
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.60 E-value=0.00022 Score=84.48 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCCh-hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCC
Q 002609 414 KISSF-NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRY 465 (900)
Q Consensus 414 ~~Gt~-~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~y 465 (900)
++|+| .++.+ .++.+++.|+..+||+|+.......++.|.+.+=|+.+|-|
T Consensus 13 GIGDfg~dl~~-~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPly 64 (496)
T PF02446_consen 13 GIGDFGDDLYQ-FIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLY 64 (496)
T ss_dssp SS--SSHHHHH-HHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGG
T ss_pred ceecHHHHHHH-HHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHH
Confidence 79999 66655 69999999999999999999877777789988888877666
No 75
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.54 E-value=0.00031 Score=89.91 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=41.6
Q ss_pred HhhhccccceEEeccCeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcc
Q 002609 117 FSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILED 181 (900)
Q Consensus 117 fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~ 181 (900)
..+-+..+|.|...++-++.|.|.|+|++|.|+.. ....+|. +++.|.|+..||.
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~-----~~~~g~~~~~~~~ 570 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMT-----HEAHGVWAAVLEP 570 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeee-----eCCCCEEEEeccc
Confidence 35678899999755432479999999999999842 3334664 6778999999874
No 76
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.47 E-value=0.0017 Score=74.69 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=78.2
Q ss_pred hHHHhhhhHHHHcCcceEEEeeeee-cC--CCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 420 EFTEKVLPHVKEAGYNVIQLFGVVE-HK--DYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 420 g~~ek~L~yLk~LGvn~I~LmPv~e-~~--~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
.+.+. ++.++++||+.+.|=-=.. .. ...+.| |+..-..+| |+-|+.|++.+|++||+.=|=+-+--++.
T Consensus 59 ~i~~~-a~~~~~~G~e~fviDDGW~~~r~~d~~~~G----dW~~~~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 59 KILEL-ADAAAELGYEYFVIDDGWFGGRDDDNAGLG----DWEPDPKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp HHHHH-HHHHHHHT-SEEEE-SSSBCTESTTTSTTS----BECBBTTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred HHHHH-HHHHHHhCCEEEEEcCccccccCCCcccCC----ceeEChhhh--CCcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 34443 7888999999876521100 00 001112 222222345 45699999999999999999997766665
Q ss_pred ccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccc
Q 002609 497 DQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSM 564 (900)
Q Consensus 497 ~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m 564 (900)
++. .+...+....+.+............||+++|+|+++|.+.+.-.++++|||.|.+|....+
T Consensus 132 ~S~----l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 132 DSD----LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SSC----HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred hhH----HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 542 2332222222211111111112246999999999999999999999999999999976554
No 77
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=97.45 E-value=0.00018 Score=89.74 Aligned_cols=65 Identities=23% Similarity=0.194 Sum_probs=52.9
Q ss_pred ccceEEeccCeEEEEEecCCceEEEEEeecCCC-CCCCcccccCCccCC-CCceEEEEEcccccCCCCCcchhhhhcccc
Q 002609 123 IVGMHRNVEHRVDFMDWAPGARYCALVGDFNGW-SPTENCAREGHLGHD-DYGYWFIILEDKLREGEKPDELYFQQYNYV 200 (900)
Q Consensus 123 ~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W-~~~~~~~~~~~~~~~-~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (900)
.||+|... ++++|+.|||.|++|.|++..++| ....++|+ ++ ..|+|+++||. ..+|. .|+|.
T Consensus 127 ~LGa~~~~-~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~-----~~~~~GVWsv~v~g-~~~G~--------~Y~Y~ 191 (898)
T TIGR02103 127 SLGATLTD-SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMT-----RDSTSGVWSAEGGS-SWKGA--------YYRYE 191 (898)
T ss_pred CCCcEEeC-CcEEEEEECCCCCEEEEEEEcCCCCccceEeCc-----cCCCCCEEEEEECc-CCCCC--------EeEEE
Confidence 39999864 579999999999999999777766 45677885 65 79999999987 55666 68888
Q ss_pred cc
Q 002609 201 DD 202 (900)
Q Consensus 201 ~~ 202 (900)
++
T Consensus 192 V~ 193 (898)
T TIGR02103 192 VT 193 (898)
T ss_pred EE
Confidence 76
No 78
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.31 E-value=0.013 Score=76.50 Aligned_cols=88 Identities=16% Similarity=0.274 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhcCcEE--EEeeccc--ccccccccc------cccCCCCCCccccCCCCCccCCCCCccccCCCHHH--
Q 002609 469 DDFKRLVDEAHGLGLLV--FLDIVHS--YSAADQMVG------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDV-- 536 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~V--ILDvV~N--H~~~~~~~~------l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~v-- 536 (900)
.+|+++-+.|+++||.+ |-|+-+. +-|.+. |. +..-.|.++.+|... -..||.+.+|...-.-
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadv-Wa~~~~f~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~g 1006 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADA-WAERSCFALDVSIGAPPDYFNPE----GQNWGLPPYDPRALRRDG 1006 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHH-hcCHHHhcCCCccCCCCCcCCcc----cccCCCcCcCHHHHHhcC
Confidence 45777888899999999 9999764 222222 11 112235566666532 2579987776543211
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCccc
Q 002609 537 LHFLLSNLNWWVVEYQIDGFQFHSLSS 563 (900)
Q Consensus 537 r~~lld~l~~Wl~eygVDGFRfD~~~~ 563 (900)
-+.+++-|+.-++ ++|++|+|-+-.
T Consensus 1007 y~~w~~rlr~~~~--~~~~lRIDH~~G 1031 (1221)
T PRK14510 1007 YRWFIERIRANMR--HAGALRIDHVRG 1031 (1221)
T ss_pred cHHHHHHHHHHHH--hCCeEEeccHHh
Confidence 1446666666664 789999996643
No 79
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=97.27 E-value=0.00039 Score=88.42 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=60.2
Q ss_pred ccceEEeccCeEEEEEecCCceEEEEEe-ecCCCCC--CCcccccCCccCCCCceEEEEEcccccCCCC-Ccchhhhhcc
Q 002609 123 IVGMHRNVEHRVDFMDWAPGARYCALVG-DFNGWSP--TENCAREGHLGHDDYGYWFIILEDKLREGEK-PDELYFQQYN 198 (900)
Q Consensus 123 ~~G~~~~~~~~~~~~ewap~a~~~~l~G-dfn~W~~--~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~-~~~~~~~~~~ 198 (900)
.||++...++.++|+.|||.|++|.|++ |+++|+. ...||. +.+.|+|+++||+ +..|.. -+.+ .|+
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~-----~~~~GvW~v~v~~-~~~G~~d~~G~---~Y~ 388 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELK-----KGDRGVWEVQLTK-ENTGIDSLTGY---YYH 388 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecc-----cCCCCEEEEEECC-cccCcccCCCc---eEE
Confidence 5999997776689999999999999998 8888875 367875 7889999999985 444331 1233 688
Q ss_pred cccccCCCCCCccHHHHH
Q 002609 199 YVDDYDKGDSGVSIQEIF 216 (900)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (900)
|.++.. +..+-+-|+.
T Consensus 389 Y~V~~~--~~~~~~~DPY 404 (1111)
T TIGR02102 389 YEITRG--GDKVLALDPY 404 (1111)
T ss_pred EEEECC--CceEEEeChh
Confidence 888642 3333344444
No 80
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=97.15 E-value=0.0008 Score=67.89 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHhCcccccCC-----ceEEeecC----CCeEEEEEcC--------------cEEEEEeCCCCCccc
Q 002609 774 SNLYSFDQELMKLDENAKVLLRGS-----PSVHHVND----AKMVICYMRG--------------PLVFIFNFHPTDSYE 830 (900)
Q Consensus 774 ~~l~~f~r~Li~LRk~~paL~~g~-----~~i~~~~~----~~~Vlaf~R~--------------~llvV~Nf~~~~s~~ 830 (900)
....+++++|++||+++|.|+.+. ..+.+.+. ...||++.-+ .++||||.+++..
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~-- 118 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQ-- 118 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-E--
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeE--
Confidence 456899999999999999999874 23444332 4679998873 4999999999842
Q ss_pred ceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEEEEEEc
Q 002609 831 DYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKLS 895 (900)
Q Consensus 831 ~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~~ 895 (900)
++.+|....|+..---. -++..++... .++.. ..+++|||+|+.||...
T Consensus 119 --t~~~~~~~g~~Lhpvq~---~~~D~~v~~a---------~~~~~--~G~~tVPa~T~aVFv~~ 167 (168)
T PF11852_consen 119 --TFTVPGLAGFQLHPVQA---ESSDPVVKQA---------SFDAA--NGTFTVPARTVAVFVQP 167 (168)
T ss_dssp --EEETGGGSS-EE-HHHH---TGSGTTGGGT---------EEETT--TTEEEE-TTEEEEEEEE
T ss_pred --EEEcCCcCceEechHHh---cccchhhhce---------eEecC--CCeEEECCceEEEEEec
Confidence 45555322255432110 0111121111 11111 24799999999999864
No 81
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.08 E-value=0.0028 Score=56.55 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCcEEEEe-ecCCCCCCceeeeeeecC-ccEEEEEeCCCCCCC-EEEEEEECCCCCeeecCCcccccccCC
Q 002609 292 KDYDVFNVASDPRWQEK-FRSKEPPIPYWLETRKGR-KAWLKKYTPGIPHGS-KYRVYFNTPDGPLERIPAWATYVQPDA 368 (900)
Q Consensus 292 ~~F~l~sp~a~~V~l~l-~~~~~~~~~~~~~~~~~~-~vW~~~~v~~~~~g~-~Y~y~v~~~~g~~~~~dpya~~~~~~~ 368 (900)
++|++|+|.|++|.|.- |..-. ..+|++.+ |.| ++.++ +..|. .|+|.| +|.....||.+.....+.
T Consensus 4 vtf~~~ap~a~~V~v~G~fn~W~-----~~~m~~~~~G~w-~~~~~-l~~G~y~Ykf~v---dg~~~~~DP~~~~~~~~~ 73 (82)
T cd02861 4 VVFAYRGPEADSVYLAGSFNNWN-----AIPMEREGDGLW-VVTVE-LRPGRYEYKFVV---DGEWVIVDPNAAAYVDDG 73 (82)
T ss_pred EEEEEECCCCCEEEEEeECCCCC-----cccCEECCCCcE-EEEEe-CCCCcEEEEEEE---CCEEeeCCCCCCceecCC
Confidence 79999999999999974 33211 24677754 666 88886 77786 889988 455545789887765554
Q ss_pred CC
Q 002609 369 DG 370 (900)
Q Consensus 369 ~~ 370 (900)
.+
T Consensus 74 ~g 75 (82)
T cd02861 74 FG 75 (82)
T ss_pred CC
Confidence 33
No 82
>PRK03705 glycogen debranching enzyme; Provisional
Probab=97.06 E-value=0.00072 Score=82.51 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=52.7
Q ss_pred ccccceEEeccCeEEEEEecCCceEEEEEeecCCCC-CCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccc
Q 002609 121 YEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWS-PTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNY 199 (900)
Q Consensus 121 ~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~-~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~ 199 (900)
..-||++..+ .++.|++|||+|++|.|+. |++++ ....+|. +.+.|+|+++||+ +.+|. .|.|
T Consensus 9 ~~pLGa~~~~-~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~-----~~~~gvW~~~v~~-~~~G~--------~Y~y 72 (658)
T PRK03705 9 PTPLGAHYDG-QGVNFTLFSAHAERVELCV-FDENGQEQRYDLP-----ARSGDIWHGYLPG-ARPGL--------RYGY 72 (658)
T ss_pred CCCcceEEeC-CCEEEEEECCCCCEEEEEE-EcCCCCeeeEeee-----eccCCEEEEEECC-CCCCC--------EEEE
Confidence 3468999865 4699999999999999997 77763 3455774 6778999999998 66777 6788
Q ss_pred ccc
Q 002609 200 VDD 202 (900)
Q Consensus 200 ~~~ 202 (900)
-++
T Consensus 73 rv~ 75 (658)
T PRK03705 73 RVH 75 (658)
T ss_pred EEc
Confidence 776
No 83
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.00058 Score=82.04 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=68.3
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCC------CHHHHHHHHHHHhh-cCcEEEEe
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYG------TPDDFKRLVDEAHG-LGLLVFLD 488 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yG------t~~elk~LV~~aH~-~GI~VILD 488 (900)
|-+.+-..+ |.-+|+-|||.|++.|++|-... ..-|...|-..+++.+. +.+|.++||..+|+ -||--|-|
T Consensus 139 Gpl~eWepr-L~va~e~gYNmIHfTPlqelG~S-~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWEPR-LRVAKESGYNMIHFTPLQELGLS-RSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhhHH-HHHHHHcCCceEeeeeHHHhccC-CCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 555555566 88999999999999999997643 34577666666666665 58999999999998 59999999
Q ss_pred ecccccccccccc
Q 002609 489 IVHSYSAADQMVG 501 (900)
Q Consensus 489 vV~NH~~~~~~~~ 501 (900)
||+|||+.++.|-
T Consensus 217 vV~NHtAnns~Wl 229 (1521)
T KOG3625|consen 217 VVYNHTANNSKWL 229 (1521)
T ss_pred hhhhccccCCchh
Confidence 9999999998654
No 84
>PLN02950 4-alpha-glucanotransferase
Probab=97.03 E-value=0.052 Score=68.65 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCCC----CCCCccCCCcccCCCCCCHHHHHHH
Q 002609 414 KISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYF----TVGYRVTNLYAVSSRYGTPDDFKRL 474 (900)
Q Consensus 414 ~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~----~wGY~~~~yfa~~~~yGt~~elk~L 474 (900)
++|+|.++.+ .++.+++.|...|||+|+.+....+ +-.|.+.+=||.+|-|=++++|-+.
T Consensus 278 GIGDf~dl~~-~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~~ 341 (909)
T PLN02950 278 GVGEFLDLKL-LVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSER 341 (909)
T ss_pred CeeCHHHHHH-HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHhh
Confidence 7899987665 5999999999999999998865322 3479999999999999888776433
No 85
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.97 E-value=0.022 Score=67.82 Aligned_cols=231 Identities=15% Similarity=0.181 Sum_probs=113.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHHH---------hcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHH
Q 002609 527 RMFKYDDLDVLHFLLSNLNWWVV---------EYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILA 597 (900)
Q Consensus 527 ~~ln~~~~~vr~~lld~l~~Wl~---------eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~ 597 (900)
+++|-+||.|+..-+..|-|.+. +..|||||+|+|.++ |.+. |+.+
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV----------------------dADl---Lqia 198 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV----------------------DADL---LQIA 198 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-----------------------THH---HHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc----------------------CHHH---HHHH
Confidence 78899999999999999999986 778999999999875 1222 2222
Q ss_pred HHHHHh---cC------CCEEEEEecCCCC-CCccccccCCCCCccccccchhHHHHHHHHccCCCCCccHHHHHHHhhc
Q 002609 598 NEILHA---LH------PNIITIAEDATYY-PGLCEPTTQGGLGFDYFLNLSASEMWLSFLENTPDHEWSMSKIVSTLVG 667 (900)
Q Consensus 598 ~~~l~~---~~------P~~ilIaE~~~~~-p~l~~~~~~gg~GFD~~~n~~~~d~~~~~lk~~~~~~~~~~~i~~~l~~ 667 (900)
....++ .+ -.-+.|-|.|+.. |...... |+- ...++....-.+...|......++.+..++..-..
T Consensus 199 ~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~--g~~--qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slv 274 (809)
T PF02324_consen 199 GDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDT--GNP--QLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLV 274 (809)
T ss_dssp HHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHT--TSS--SBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSS
T ss_pred HHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcC--CCc--eeeecHHHHHHHHHHhcCCccccccHHHHhhhhhc
Confidence 222221 11 1468899999843 2222211 111 11233344444555565555555666666543222
Q ss_pred CCC------CccceEeccccccccccCCCch-hhhhcccccCCC--CCc-hhhhhhhhH--------------HHH--HH
Q 002609 668 NGQ------YSDKMIMYAENHNQSISGGRSF-AEILFGEISEHS--PDT-NNLLLRGCS--------------LHK--MI 721 (900)
Q Consensus 668 ~~~------~~~~~v~Y~enHD~~~~G~~tl-~~~l~~~~~~~~--~~~-~~~~~r~~~--------------l~k--ma 721 (900)
+|. ......+|+.+||+.. +++ +..+.+...... ... .+.+..+.. ... .+
T Consensus 275 nR~~d~~en~a~pNYsFvrAHDsev---Q~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsa 351 (809)
T PF02324_consen 275 NRSNDSTENEAQPNYSFVRAHDSEV---QTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSA 351 (809)
T ss_dssp ECSEE--SSESS-EEEES-BSSTTT---HHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHH
T ss_pred ccccCCcCCcccCceeeeecccHHH---HHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHH
Confidence 321 2335788999999863 122 222211111100 001 111111100 111 23
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccccccccccccCchHHHHHHHHHHHHHhCcccccCCceEE
Q 002609 722 RLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRLHSNLYSFDQELMKLDENAKVLLRGSPSVH 801 (900)
Q Consensus 722 ~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~~W~~~~~~~~~~l~~f~r~Li~LRk~~paL~~g~~~i~ 801 (900)
.+++|+--..+|-+|||+-+-..+..- . ....-++-+-.|++-|.++- .|.+.+.
T Consensus 352 YAllLtNKDTVPRVYYGDLYtDdGQYM------------------a----~KSpYyDaI~tLLKaRikYv---aGGQtM~ 406 (809)
T PF02324_consen 352 YALLLTNKDTVPRVYYGDLYTDDGQYM------------------A----TKSPYYDAITTLLKARIKYV---AGGQTMA 406 (809)
T ss_dssp HHHHHH-SSSEEEEEHHHHBESSSSTT------------------T----SB-TTHHHHHHHHHHHHHH-----S-EEEE
T ss_pred HHHHHhCCCCCceEEecccccccchhh------------------h----hcCchHHHHHHHHHHHHHhh---cCCceee
Confidence 456667677789999999887654321 0 01123556778888888863 3443443
Q ss_pred e--e-cCCCeEEEEEc
Q 002609 802 H--V-NDAKMVICYMR 814 (900)
Q Consensus 802 ~--~-~~~~~Vlaf~R 814 (900)
. . .....||.=.|
T Consensus 407 ~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 407 VTYLNGDNSGVLTSVR 422 (809)
T ss_dssp E--EEETTTSEEEEEE
T ss_pred eecccCCCCceEEEEe
Confidence 2 1 23345887776
No 86
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.95 E-value=0.0033 Score=70.46 Aligned_cols=136 Identities=15% Similarity=0.257 Sum_probs=83.5
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCcc-CCCcccCC-CCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRV-TNLYAVSS-RYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~-~~yfa~~~-~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
+-..+.+ +++.+++.|| ++|+|- ........++||.. .+ |.-++ +|- +.++||+++|++|++|++-| ..
T Consensus 21 s~~~v~~-~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i-~P 93 (317)
T cd06594 21 GTDKVLE-ALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYI-NP 93 (317)
T ss_pred CHHHHHH-HHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEe-cC
Confidence 4556655 4888999887 678875 22111112344421 12 23332 454 47899999999999999955 45
Q ss_pred ccccccccccccCC-CCCCccccCCCCC--c-cCCC--CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 493 YSAADQMVGLSQFD-GSNDCYFHTGKRG--F-HKYW--GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 493 H~~~~~~~~l~~fd-g~~~~yf~~~~~g--~-~~~w--g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
++..+.... |+ +....||....+| + ...| .+..+|+.||+++++..+.++..+.++|||||-+|.-.
T Consensus 94 ~v~~~~~~~---y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 94 YLADDGPLY---YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ceecCCchh---HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 555433211 11 1122233322222 1 1233 23678999999999999999988778999999999543
No 87
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.89 E-value=0.0049 Score=68.66 Aligned_cols=128 Identities=20% Similarity=0.434 Sum_probs=81.4
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+-+.+.+ ++..++++|| +.|+|=-=+. ..+| + |..+ .+|- +.++||+++|++|++|++=+-+ +
T Consensus 28 s~~~v~~-~~~~~~~~~iP~d~i~iD~~w~----~~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVLN-YAQEIIDNGFPNGQIEIDDNWE----TCYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHHH-HHHHHHHcCCCCCeEEeCCCcc----ccCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-e
Confidence 3445555 4888999996 4665521111 0111 2 2333 3564 3789999999999999998876 4
Q ss_pred cccccccccccCC-CCCCccccCCCCC----ccCCCC--CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 494 SAADQMVGLSQFD-GSNDCYFHTGKRG----FHKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 494 ~~~~~~~~l~~fd-g~~~~yf~~~~~g----~~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
++.++. .|. +....||-...+| ....|. +..+|+.||++++++.+.++..+.++|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 444332 122 2222233332222 112342 3678999999999999999999989999999999643
No 88
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.84 E-value=0.0016 Score=79.93 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=52.0
Q ss_pred cccceEEeccCeEEEEEecCCceEEEEEeecCCCCCC---CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcc
Q 002609 122 EIVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPT---ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYN 198 (900)
Q Consensus 122 ~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~---~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~ 198 (900)
..||++... +++.|+.|||.|++|.|+ -|++++.. .+||+ +...|+|+++||+ +.+|. .|.
T Consensus 5 ~~LGa~~~~-~g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~-----~~~~gvW~~~v~~-~~~g~--------~Y~ 68 (688)
T TIGR02100 5 FPLGATWDG-QGVNFALFSANAEKVELC-LFDAQGEKEEARLPLP-----ERTDDIWHGYLPG-AQPGQ--------LYG 68 (688)
T ss_pred cCCCeEEeC-CcEEEEEECCCCCEEEEE-EEcCCCCceeeEEecc-----cCCCCEEEEEECC-CCCCC--------EEE
Confidence 348999865 469999999999999986 67776543 34664 7778999999998 66777 788
Q ss_pred ccccc
Q 002609 199 YVDDY 203 (900)
Q Consensus 199 ~~~~~ 203 (900)
|.++-
T Consensus 69 yrv~g 73 (688)
T TIGR02100 69 YRVHG 73 (688)
T ss_pred EEEee
Confidence 88864
No 89
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.77 E-value=0.019 Score=68.64 Aligned_cols=174 Identities=12% Similarity=0.228 Sum_probs=90.6
Q ss_pred hhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCC-----CC-------CCHHHHHHHHHHHhhcCcEE
Q 002609 418 FNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSS-----RY-------GTPDDFKRLVDEAHGLGLLV 485 (900)
Q Consensus 418 ~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~-----~y-------Gt~~elk~LV~~aH~~GI~V 485 (900)
.....+ .|+.|++.-||.||+ +.|-|.-...+..+. .+ =..+-+|.+|++||+.||++
T Consensus 117 ~~~~~~-~i~~L~~yHIN~~QF---------YDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmka 186 (559)
T PF13199_consen 117 AEDIEA-EIDQLNRYHINGLQF---------YDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKA 186 (559)
T ss_dssp HHHHHH-HHHHHHHTT--EEEE---------TS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EE
T ss_pred chhHHH-HHHHHHhhCcCeEEE---------EeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcce
Confidence 334344 499999999999985 346665555554444 33 22789999999999999999
Q ss_pred EEeecccccccccccccccCCCC--CCccccCCCCC------ccCCCCC--ccccCCCHHHHHHHHHHHHHHHHhcCccE
Q 002609 486 FLDIVHSYSAADQMVGLSQFDGS--NDCYFHTGKRG------FHKYWGT--RMFKYDDLDVLHFLLSNLNWWVVEYQIDG 555 (900)
Q Consensus 486 ILDvV~NH~~~~~~~~l~~fdg~--~~~yf~~~~~g------~~~~wg~--~~ln~~~~~vr~~lld~l~~Wl~eygVDG 555 (900)
+.=.-..-+..+. .-+|. ....|..+... ....|.+ ..+|..|++-|++|+......++++||||
T Consensus 187 m~Ynmiyaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG 261 (559)
T PF13199_consen 187 MAYNMIYAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDG 261 (559)
T ss_dssp EEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--E
T ss_pred ehhHhhhccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCce
Confidence 8743332222221 11231 12223322211 1134554 67799999999999999999999999999
Q ss_pred EEecCcccchhccCCccccCCChhhhhhccc-chhHHHHHHHHHHHHHhcCCCEEEEEecCCCCC
Q 002609 556 FQFHSLSSMIYTHNGFASLTGDLEEYCNQYV-DKDALLYLILANEILHALHPNIITIAEDATYYP 619 (900)
Q Consensus 556 FRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~-d~~a~~~l~~~~~~l~~~~P~~ilIaE~~~~~p 619 (900)
|.+|.++..... + .+-+..+ +. .-.|-..++ .+++..|+..++--.+++++
T Consensus 262 ~hlDq~G~~~~~---~--------d~~G~~i~~l-~~~y~~Fi~-~~K~~~~~k~lv~N~V~~~g 313 (559)
T PF13199_consen 262 WHLDQLGNRGTV---Y--------DYDGNKIYDL-SDGYASFIN-AMKEALPDKYLVFNAVSGYG 313 (559)
T ss_dssp EEEE-S--EEEE---G--------GTT---GGEC-HHHHHHHHH-HHHHHSTTSEEEEB-GGGTT
T ss_pred EeeeccCCCCcc---c--------cCCCCCchhh-HHHHHHHHH-HHHHhCCCCceeeeccCccc
Confidence 999987643210 0 0101111 11 122333333 34555577778777776554
No 90
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.76 E-value=0.0027 Score=71.87 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCcEEEEeecccccccc-ccccc--ccC-CCCCCccccCCCCCc--c--CCC-C-CccccCCCHHHHHH
Q 002609 470 DFKRLVDEAHGLGLLVFLDIVHSYSAAD-QMVGL--SQF-DGSNDCYFHTGKRGF--H--KYW-G-TRMFKYDDLDVLHF 539 (900)
Q Consensus 470 elk~LV~~aH~~GI~VILDvV~NH~~~~-~~~~l--~~f-dg~~~~yf~~~~~g~--~--~~w-g-~~~ln~~~~~vr~~ 539 (900)
+.++||+++|++|++|+|-|.+ ++..+ ...+. ..| .+....||..+..|. . ..| | +..+|+.||+++++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5889999999999999985553 22211 10000 011 111223343333332 1 234 3 36799999999999
Q ss_pred HHHHHHHHHHhcCccEEEecCcc
Q 002609 540 LLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 540 lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
..+.++.+++++|||||-+|+.-
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCC
Confidence 99999999989999999999653
No 91
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.72 E-value=0.0014 Score=78.72 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=41.1
Q ss_pred EEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 134 VDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 134 ~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
|+|++|||+|++|.|+++ ...+||+ +++.|+|+++||+ +.+|. .|+|.+|
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~-----k~~~GvW~~~v~~-~~~G~--------~Y~y~v~ 50 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQ-----RLGDGWFEITVPP-VGPGD--------RYGYVLD 50 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCe-----ECCCCEEEEEECC-CCCCC--------EEEEEEe
Confidence 579999999999999973 2467885 8888999999987 66665 6888876
No 92
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.62 E-value=0.0087 Score=66.70 Aligned_cols=130 Identities=16% Similarity=0.254 Sum_probs=81.6
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+-..+.+ ++..+++.|| ++|+|=.=+.. +|.-.+ |..+ .+|.. .++||+++|++|++|++-+.+ +
T Consensus 22 ~~~~v~~-~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVNE-FADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHHH-HHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 3445544 5889999994 55665432221 121123 3333 46654 689999999999999999875 5
Q ss_pred cccccccccccCC-CCCCccccCCCCCc---cCCCC--CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCccc
Q 002609 494 SAADQMVGLSQFD-GSNDCYFHTGKRGF---HKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSS 563 (900)
Q Consensus 494 ~~~~~~~~l~~fd-g~~~~yf~~~~~g~---~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~ 563 (900)
.+.++. .|. +....||-.+.++. ...|. +..+|+.||++++++.+.++.++ ++|||||-+|....
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~e~ 160 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFGER 160 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCCCC
Confidence 555432 121 11112332222221 12232 25789999999999999999887 69999999996654
No 93
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=96.39 E-value=0.0058 Score=56.75 Aligned_cols=87 Identities=29% Similarity=0.480 Sum_probs=65.7
Q ss_pred CCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCC-------CCCCCEEEEEEECCCCC-eeecCC
Q 002609 289 DNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPG-------IPHGSKYRVYFNTPDGP-LERIPA 359 (900)
Q Consensus 289 ~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~-------~~~g~~Y~y~v~~~~g~-~~~~dp 359 (900)
+.|+.|+||||.|++|.|+ .+...-.....+|.+ ..|+| ++++++ ++||++|+|+|...+|. .+++||
T Consensus 4 ~~g~~FrvwAP~A~~V~l~--GdFn~W~~~~~~m~k~~~G~W-~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DP 80 (99)
T cd02854 4 DGGVTYREWAPNAEEVYLI--GDFNNWDRNAHPLKKDEFGVW-EITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPA 80 (99)
T ss_pred CCeEEEEEECCCCCEEEEE--ccCCCCCCcCcccEECCCCEE-EEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCc
Confidence 4689999999999999998 221111112245776 57899 999998 56999999999986676 689999
Q ss_pred cccccccCCCCCCceeEec
Q 002609 360 WATYVQPDADGKEAFAIHW 378 (900)
Q Consensus 360 ya~~~~~~~~~~~~~~~~~ 378 (900)
||+++.+++....+.+++|
T Consensus 81 yA~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 81 WIKYVTQDKETALYDGVFW 99 (99)
T ss_pred ceeEEEeCCCCcceeeEEC
Confidence 9999988776555555543
No 94
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.36 E-value=0.056 Score=60.37 Aligned_cols=165 Identities=21% Similarity=0.211 Sum_probs=94.2
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCC-CCCCCccCCCcccC--CCCCCHHHHHHHHHHHhhcCcEEEEeecccccccc
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDY-FTVGYRVTNLYAVS--SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAAD 497 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~-~~wGY~~~~yfa~~--~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~ 497 (900)
..++.|+.|++-|+|+|- .+...+ +.-.|....--+.. ..-..+.++++|+++||++||.+|.=|| +-++
T Consensus 14 ~~~~~~~~i~~t~lNavV----IDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv---~FkD 86 (316)
T PF13200_consen 14 RLDKLLDLIKRTELNAVV----IDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIV---VFKD 86 (316)
T ss_pred HHHHHHHHHHhcCCceEE----EEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEE---EecC
Confidence 355679999999999994 344322 22335433221211 1111257999999999999999999998 2222
Q ss_pred cccccccCCCCCCccccCCCCCc--cCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccC
Q 002609 498 QMVGLSQFDGSNDCYFHTGKRGF--HKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLT 575 (900)
Q Consensus 498 ~~~~l~~fdg~~~~yf~~~~~g~--~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~ 575 (900)
.... .. .+...++ ...|. .+.-+..-+|-.+++|++|+++.++-.+ ..|||..-||-+..- +.+...
T Consensus 87 ~~la--~~--~pe~av~-~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYIRFP---~~~~~~-- 155 (316)
T PF13200_consen 87 PVLA--EA--HPEWAVK-TKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYIRFP---DEGRLS-- 155 (316)
T ss_pred hHHh--hh--ChhhEEE-CCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeeeecC---CCCccc--
Confidence 2100 00 1112221 11121 1111224567889999999999999988 789999999976432 111100
Q ss_pred CChhhhhhc-cc--chhHH-HHHHHHHHHHHhcC
Q 002609 576 GDLEEYCNQ-YV--DKDAL-LYLILANEILHALH 605 (900)
Q Consensus 576 g~~~~~~~~-~~--d~~a~-~~l~~~~~~l~~~~ 605 (900)
.. .|... .. -.+++ .|++.+++.|+..+
T Consensus 156 -~l-~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~ 187 (316)
T PF13200_consen 156 -GL-DYSENDTEESRVDAITDFLAYAREELHPYG 187 (316)
T ss_pred -cc-ccCCCCCcchHHHHHHHHHHHHHHHHhHcC
Confidence 00 01000 11 12343 68889998887653
No 95
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.30 E-value=0.047 Score=65.06 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecC
Q 002609 412 KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHK 446 (900)
Q Consensus 412 ~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~ 446 (900)
.-++|+|...+...++.+++.|....||+|+....
T Consensus 28 ~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~ 62 (513)
T TIGR00217 28 EWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPAD 62 (513)
T ss_pred CCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCC
Confidence 36789999999888999999999999999998754
No 96
>PLN02877 alpha-amylase/limit dextrinase
Probab=96.25 E-value=0.0063 Score=76.26 Aligned_cols=63 Identities=22% Similarity=0.292 Sum_probs=48.6
Q ss_pred ccceEEeccCeEEEEEecCCceEEEEEeecCCCCCC----CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcc
Q 002609 123 IVGMHRNVEHRVDFMDWAPGARYCALVGDFNGWSPT----ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYN 198 (900)
Q Consensus 123 ~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~W~~~----~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~ 198 (900)
.||++..++ +++|+.|||.|++|.|+- |++++.. ..+| ....|+|++++|. ..+|. .|+
T Consensus 214 ~LGA~~~~~-g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m------~~~~GVWsv~v~~-~~~G~--------~Y~ 276 (970)
T PLN02877 214 PLGAHFSKD-AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQL------KESNGVWSVEGPK-SWEGC--------YYV 276 (970)
T ss_pred CCcceEecC-CEEEEEECCCCCEEEEEE-ecCCCCccceEEecc------cCCCCEEEEEecc-CCCCC--------eeE
Confidence 599998654 699999999999999995 6666432 2345 2679999999987 45565 688
Q ss_pred cccc
Q 002609 199 YVDD 202 (900)
Q Consensus 199 ~~~~ 202 (900)
|.++
T Consensus 277 Y~V~ 280 (970)
T PLN02877 277 YEVS 280 (970)
T ss_pred EEEe
Confidence 8887
No 97
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.18 E-value=0.0085 Score=67.22 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=75.9
Q ss_pred hhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeeccccc
Q 002609 418 FNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYS 494 (900)
Q Consensus 418 ~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~ 494 (900)
=..+.+ +++.+++.|| ++|+|= .......|+ .+ |..+ .+|-. .++||+.+|++||+|++-+. -++
T Consensus 23 ~~ev~~-~~~~~~~~~iP~d~i~lD----~~~~~~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~v 90 (319)
T cd06591 23 QEELLD-VAKEYRKRGIPLDVIVQD----WFYWPKQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIW-PTF 90 (319)
T ss_pred HHHHHH-HHHHHHHhCCCccEEEEe----chhhcCCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CCc
Confidence 344443 4788888766 556552 111001111 12 3333 25543 57999999999999999553 445
Q ss_pred ccccccccccCC-CCCCccccCCCCC--ccCCCC--CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 495 AADQMVGLSQFD-GSNDCYFHTGKRG--FHKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 495 ~~~~~~~l~~fd-g~~~~yf~~~~~g--~~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
+.++.. |. +....||..+..+ +...|. +..+|+.||+++++..+.++.-+.++|||||-+|.-.
T Consensus 91 ~~~~~~----y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 91 GPETEN----YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred CCCChh----HHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 543321 11 1122233322222 223453 2678999999999988877765668999999999653
No 98
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.88 E-value=0.011 Score=66.18 Aligned_cols=130 Identities=21% Similarity=0.293 Sum_probs=77.6
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYS 494 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~ 494 (900)
+-..+.+ ++..+++.+| ++|+|=.=+ ...+..|-+++ .+|- +.++||+.+|++|++|++-+. -++
T Consensus 22 ~~~~v~~-~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~-------~~FP---dp~~~i~~l~~~g~k~~~~~~-P~i 88 (317)
T cd06600 22 PQDKVVE-VVDIMQKEGFPYDVVFLDIHY-MDSYRLFTWDP-------YRFP---EPKKLIDELHKRNVKLVTIVD-PGI 88 (317)
T ss_pred CHHHHHH-HHHHHHHcCCCcceEEEChhh-hCCCCceeech-------hcCC---CHHHHHHHHHHCCCEEEEEee-ccc
Confidence 3444444 4788888887 566663211 01111121222 2444 457999999999999999654 344
Q ss_pred ccccccccccC-CCCCCccccCCCCCc---cCCC-C-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 495 AADQMVGLSQF-DGSNDCYFHTGKRGF---HKYW-G-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 495 ~~~~~~~l~~f-dg~~~~yf~~~~~g~---~~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
..+... ..| .+....||.....+. ...| | +..+|+.||+++++..+.++..+.++|||||-+|..
T Consensus 89 ~~~~~~--~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~ 159 (317)
T cd06600 89 RVDQNY--SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMN 159 (317)
T ss_pred cCCCCC--hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCC
Confidence 332210 011 122223443322221 2334 2 256899999999999999999888999999999954
No 99
>smart00632 Aamy_C Aamy_C domain.
Probab=95.87 E-value=0.047 Score=48.69 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCCeEEEEEcC-cEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEE
Q 002609 805 DAKMVICYMRG-PLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVP 883 (900)
Q Consensus 805 ~~~~Vlaf~R~-~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 883 (900)
.++.+|+|.|+ ..+|++|.+.......+...+| .|.|+.+++. ...|.. + . .. ..+.+.++
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp-~G~Y~d~l~g---~~~g~~-v-------~-----V~-~~G~~~~~ 67 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDSDLTITLQTSLP-AGTYCDVISG---LCTGKS-V-------T-----VG-SNGIATFT 67 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCCceEEEEeecCC-CcceEEEecC---cccCCE-E-------E-----EC-CCCEEEEE
Confidence 34459999995 7888899987633233334664 5899999874 111110 0 0 11 01367899
Q ss_pred EcCcEE-EEEE
Q 002609 884 LPSRTA-QVYK 893 (900)
Q Consensus 884 LP~rsa-~Vl~ 893 (900)
|||+++ +|+.
T Consensus 68 l~~~~~v~i~~ 78 (81)
T smart00632 68 LPAGGAVAIHV 78 (81)
T ss_pred ECCCCeEEEEE
Confidence 999994 4444
No 100
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=95.58 E-value=0.022 Score=52.82 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCCCCCeEEeC----CceEEEEEcCCCCcEEEEe-ecCCCCCCceeeeeee-c-CccEEEEEeCCCCCCCEEEEEEECCC
Q 002609 279 LPSNLPYDVID----NGKDYDVFNVASDPRWQEK-FRSKEPPIPYWLETRK-G-RKAWLKKYTPGIPHGSKYRVYFNTPD 351 (900)
Q Consensus 279 ~g~~lpa~~~~----~g~~F~l~sp~a~~V~l~l-~~~~~~~~~~~~~~~~-~-~~vW~~~~v~~~~~g~~Y~y~v~~~~ 351 (900)
|-..|++++.+ +|++|+||+|.|++|+|++ +...... ..+|.+ . .|+| ++.++++.+|..|+|++...+
T Consensus 6 p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~---~~~m~~~~~~G~w-~~~v~~~~~~~~Y~~~v~~~~ 81 (106)
T cd02855 6 LYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGR---RHPMRRRGDSGVW-ELFIPGLGEGELYKYEILGAD 81 (106)
T ss_pred HHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCc---ceecEECCCCCEE-EEEECCCCCCCEEEEEEECCC
Confidence 44568888888 7899999999999999997 3221111 235665 3 6677 899999999999999998765
Q ss_pred CC-eeecCCcccccccCC
Q 002609 352 GP-LERIPAWATYVQPDA 368 (900)
Q Consensus 352 g~-~~~~dpya~~~~~~~ 368 (900)
|. ....|||++.+.+++
T Consensus 82 g~~~~~~DPYa~~~~~~~ 99 (106)
T cd02855 82 GHLPLKADPYAFYSELRP 99 (106)
T ss_pred CCEEEeeCCCceeeEeCC
Confidence 43 567899999887753
No 101
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.57 E-value=0.022 Score=63.84 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=74.9
Q ss_pred hhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccc
Q 002609 424 KVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMV 500 (900)
Q Consensus 424 k~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~ 500 (900)
+++..+++.|| ++|+|=+=+.... |-.-.+ |.-+ .+|- +.++||+++|++|++|++-+.+ +++.+++.
T Consensus 33 ~~~~~~r~~~iP~d~i~ld~~~~~~~----~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~~~~~ 103 (317)
T cd06599 33 EFIDKCREHDIPCDSFHLSSGYTSIE----GGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQDHPR 103 (317)
T ss_pred HHHHHHHHcCCCeeEEEEeccccccC----CCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccCCCHH
Confidence 45888888887 6676632111000 000011 2322 3554 5679999999999999996543 34433221
Q ss_pred ccccCC-CCCCccccCCCCCc----cCCCC--CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 501 GLSQFD-GSNDCYFHTGKRGF----HKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 501 ~l~~fd-g~~~~yf~~~~~g~----~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
|+ +....||-....+. ...|. +..+|+.||+++++..+.++.-+.+.|||||-+|..
T Consensus 104 ----y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 104 ----YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred ----HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 21 11223332222111 22342 257899999999999999977777899999999954
No 102
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.51 E-value=0.21 Score=53.93 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=79.9
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCC--CC--CHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSR--YG--TPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~--yG--t~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
.+++.++.|+++|+|+|=|.--.+. +..+++. +. ..+.|+++|++|+++||.||||+-.. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~------------~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~---~ 86 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEA------------YQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA---P 86 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTS------------TSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES---T
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHH------------hcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC---c
Confidence 5666699999999999987554211 1112222 22 26899999999999999999998532 0
Q ss_pred ccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhc----CccEEEecCcccchhccCCcc
Q 002609 497 DQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEY----QIDGFQFHSLSSMIYTHNGFA 572 (900)
Q Consensus 497 ~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~ey----gVDGFRfD~~~~m~~~~~g~~ 572 (900)
.+.. ............+++.+.++..+..| .|-|| +.+... ....
T Consensus 87 --------------~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~NEP----~~~~ 135 (281)
T PF00150_consen 87 --------------GWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELWNEP----NGGN 135 (281)
T ss_dssp --------------TCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESSSSG----CSTT
T ss_pred --------------cccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--EecCCc----cccC
Confidence 0000 00111222335566666677777776 34443 322211 1100
Q ss_pred ccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEec
Q 002609 573 SLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAED 614 (900)
Q Consensus 573 ~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE~ 614 (900)
. ...+ .......-..+.+.+...+++..|+.+++.+.
T Consensus 136 ~---~~~w--~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 136 D---DANW--NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp S---TTTT--SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred C---cccc--ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 0000 00001122356778888999999998877775
No 103
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.49 E-value=0.14 Score=62.73 Aligned_cols=132 Identities=15% Similarity=0.070 Sum_probs=79.0
Q ss_pred hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCC--CCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 419 NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTV--GYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~w--GY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
+.+. .+|+.||++|+|+|+|-......+.+.+ =|-|..+.-.... --+-+.-.+ +|++|++|..-+-.--++-
T Consensus 334 ~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d--~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 334 RNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRAD--LFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccC--CcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 3444 4599999999999999887665543221 1333322211100 012333444 9999999988775433221
Q ss_pred ccccc-cccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 497 DQMVG-LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 497 ~~~~~-l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
+.... ...++ ...++...++.|+.+ |+-..|+||+.|.+...-.+..|.|||.-||-=.
T Consensus 409 ~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~ 468 (671)
T PRK14582 409 DPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDA 468 (671)
T ss_pred CCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccc
Confidence 11000 00010 001111235566555 8999999999999999999988999999998543
No 104
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.36 E-value=0.026 Score=66.08 Aligned_cols=130 Identities=18% Similarity=0.350 Sum_probs=73.7
Q ss_pred hhHHHhhhhHHHHcCcce--EEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 419 NEFTEKVLPHVKEAGYNV--IQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~--I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
..+. +++..+++.||-. |+|=.-+.. ....|-+++. +|- ++++||+.+|++|++|++-+.+ ++..
T Consensus 43 ~~v~-~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~-------~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 43 DEVR-EVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPE-------RFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp HHHH-HHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TT-------TTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred HHHH-HHHHHHHHcCCCccceeccccccc-cccccccccc-------ccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 3444 4588899888844 433221111 1112222222 333 7889999999999999999876 3443
Q ss_pred ccccccccCCC-CCCccccCCCCC---ccCCCC--CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 497 DQMVGLSQFDG-SNDCYFHTGKRG---FHKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 497 ~~~~~l~~fdg-~~~~yf~~~~~g---~~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
... ....|+. ....|+-....+ ....|. +..+|+.+|++++++.+.++..+..+|||||-+|...
T Consensus 110 ~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 110 DSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp TTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred CCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 332 0001111 111233323233 123354 4788999999999999999999988899999999743
No 105
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.07 E-value=0.039 Score=62.52 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=76.5
Q ss_pred hhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 419 NEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
..+.+ ++..+++.|| +.|+|=.=+. . +| .+ |..+ .+|-.+. -++||+++|++|++|++-+. -|+.
T Consensus 24 ~~v~~-~~~~~r~~~iP~d~i~lD~~~~-~-----~~--~~-f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~-P~v~ 91 (339)
T cd06602 24 DEVKE-VVENMRAAGIPLDVQWNDIDYM-D-----RR--RD-FTLDPVRFPGLK-MPEFVDELHANGQHYVPILD-PAIS 91 (339)
T ss_pred HHHHH-HHHHHHHhCCCcceEEECcccc-c-----Cc--cc-eecccccCCCcc-HHHHHHHHHHCCCEEEEEEe-Cccc
Confidence 34444 4788888887 5666521110 0 11 12 2222 2444331 18999999999999999764 3444
Q ss_pred cccc-cccccCC-CCCCccccCCCCCcc---CCC-C-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 496 ADQM-VGLSQFD-GSNDCYFHTGKRGFH---KYW-G-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 496 ~~~~-~~l~~fd-g~~~~yf~~~~~g~~---~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
.+.. .....|+ +....||..+..|.. ..| | +..+|+.||+++++..+.++..++++|||||-+|...
T Consensus 92 ~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 92 ANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred cCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 3210 0001111 112223333323321 233 2 2557999999999999999999988999999999643
No 106
>PRK10426 alpha-glucosidase; Provisional
Probab=94.89 E-value=0.11 Score=63.51 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=80.3
Q ss_pred hHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccC-CCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 420 EFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVT-NLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 420 g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~-~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
.+.+ ++..+++.|| ++|||.- +....+.+||...- || .-+ .+|- +.++||+++|++|++|++-+.+- +.
T Consensus 222 ~v~~-v~~~~r~~~IP~d~i~ldd-w~~~~~~~~g~~~~~~~-~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v~ 294 (635)
T PRK10426 222 VVQK-KLDTMRNAGVKVNGIWAQD-WSGIRMTSFGKRLMWNW-KWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-LA 294 (635)
T ss_pred HHHH-HHHHHHHcCCCeeEEEEec-ccccccccccccccccc-eEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-cC
Confidence 3444 5888999885 7888851 21111123443221 22 222 3443 47789999999999999987543 33
Q ss_pred cccccccccCC-CCCCccccCCCCCc--c-CCC--CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 496 ADQMVGLSQFD-GSNDCYFHTGKRGF--H-KYW--GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 496 ~~~~~~l~~fd-g~~~~yf~~~~~g~--~-~~w--g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
.+.. .|+ +....||-.+.+|. . ..| .+..+|+.||+++++..+.++..+.++|||||-.|.-.
T Consensus 295 ~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E 363 (635)
T PRK10426 295 SDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGE 363 (635)
T ss_pred CCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCC
Confidence 2221 111 11223443332221 1 223 24678999999999999998877779999999999644
No 107
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=94.78 E-value=0.075 Score=60.19 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccCC-CCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVSS-RYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~~-~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+-..+.+ ++..+++.|| ++|+|=.-+.. +|. + |.-++ +|- +.++||+.+|++|++|++-+.+ |
T Consensus 22 ~~~~v~~-~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVRE-IADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHHH-HHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-c
Confidence 3344444 5888999887 66776422211 111 1 23332 554 4589999999999999987643 3
Q ss_pred cccccccccccCC-CCCCccccCCCCCc---cCCC-C-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 494 SAADQMVGLSQFD-GSNDCYFHTGKRGF---HKYW-G-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 494 ~~~~~~~~l~~fd-g~~~~yf~~~~~g~---~~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
+..+.. ...|+ +....||-...+|. ...| | +..+|+.||+++++..+.++..+ +.|||||-+|...
T Consensus 88 v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred eeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCCC
Confidence 322110 00111 11122333222221 2234 2 25679999999999999999877 8999999999653
No 108
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=94.70 E-value=0.18 Score=62.20 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhcCc--EEEEeeccc--ccccccccc-c-----ccCCCCCCccccCCCCCccCCCCCccccCCCHHH--
Q 002609 469 DDFKRLVDEAHGLGL--LVFLDIVHS--YSAADQMVG-L-----SQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDV-- 536 (900)
Q Consensus 469 ~elk~LV~~aH~~GI--~VILDvV~N--H~~~~~~~~-l-----~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~v-- 536 (900)
++++++-+.|+++|| ++|-|+-+. +-|.+. |. . ..--|.++.+|... -..||.+.+|...-.-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDv-Wa~~~~F~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~g 429 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAET-WCDRELYCLKASVGAPPDILGPL----GQNWGLPPMDPHVLQARA 429 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHH-hCCHHHhcCCCcCCCCCCcCCcc----cccCCCcCcCHHHHHhcC
Confidence 578888899999999 679999753 222222 11 1 11235555666532 2578887776533111
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCcccchhc---cCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEe
Q 002609 537 LHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT---HNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAE 613 (900)
Q Consensus 537 r~~lld~l~~Wl~eygVDGFRfD~~~~m~~~---~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE 613 (900)
=+.+++-++.-++ ++|++|+|-+-.+.+. ..|-+...|.|-.|+ ...++..+ .+.+..+++.+|||
T Consensus 430 y~ww~~rlr~~~~--~~g~lRIDH~~Gl~rlW~IP~g~~a~~G~yv~~P-------~~~ll~~l--ales~~~~~~vIgE 498 (695)
T PRK11052 430 YQPFIDLLRANMQ--HCGALRIDHVMSLLRLWWIPYGETADQGAYVHYP-------VDDLLAIL--ALESQRHRCMVIGE 498 (695)
T ss_pred cHHHHHHHHHHHH--hCCEEEecchhhhheeeecCCCCCCCCCeeEeCC-------HHHHHHHH--HHHHhcCCCCEEEe
Confidence 1335555555554 6899999966432210 112222223222221 11222211 12444568999999
Q ss_pred cCCCCC
Q 002609 614 DATYYP 619 (900)
Q Consensus 614 ~~~~~p 619 (900)
+...-|
T Consensus 499 DLG~Vp 504 (695)
T PRK11052 499 DLGTVP 504 (695)
T ss_pred eCCCCC
Confidence 876443
No 109
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.68 E-value=0.058 Score=66.61 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=41.8
Q ss_pred CCCCCeEEeCCceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccEEEEEeCCCCCC
Q 002609 280 PSNLPYDVIDNGKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAWLKKYTPGIPHG 340 (900)
Q Consensus 280 g~~lpa~~~~~g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW~~~~v~~~~~g 340 (900)
...|+|++.++|+.|+||||+|++|.|...-.+-... ..+|++ ..|+| ++++|+ ..|
T Consensus 104 y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdFN~W~~~--~~~M~~~~~GvW-e~~ip~-~~g 161 (758)
T PLN02447 104 YEKFGFNRSEGGITYREWAPGAKAAALIGDFNNWNPN--AHWMTKNEFGVW-EIFLPD-ADG 161 (758)
T ss_pred HHhceeEEecCCEEEEEECCCCCEEEEEEecCCCCCC--ccCceeCCCCEE-EEEECC-ccc
Confidence 3468899999999999999999999999843221111 135776 45677 999997 555
No 110
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.66 E-value=0.24 Score=55.61 Aligned_cols=129 Identities=9% Similarity=0.148 Sum_probs=75.7
Q ss_pred hhhHHHhhhhHHHHcCc--ceEEEeeeeec-CC-CCCCCCccCCCccc-CCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 418 FNEFTEKVLPHVKEAGY--NVIQLFGVVEH-KD-YFTVGYRVTNLYAV-SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 418 ~~g~~ek~L~yLk~LGv--n~I~LmPv~e~-~~-~~~wGY~~~~yfa~-~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
-..+.+ ++..+++.|| ++|+|=.=+-. .. ...+| + |.. ..+|-. .++||+.+|++|++|++-+.+
T Consensus 23 ~~~v~~-~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~----~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P- 92 (317)
T cd06598 23 WQEVDD-TIKTLREKDFPLDAAILDLYWFGKDIDKGHMG----N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP- 92 (317)
T ss_pred HHHHHH-HHHHHHHhCCCceEEEEechhhcCcccCCcee----e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC-
Confidence 344444 4788888886 56665331100 00 00011 2 222 245654 478999999999999998753
Q ss_pred ccccccccccccCC-CC-CCccccCCCCC--c-cCCC--CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 493 YSAADQMVGLSQFD-GS-NDCYFHTGKRG--F-HKYW--GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 493 H~~~~~~~~l~~fd-g~-~~~yf~~~~~g--~-~~~w--g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
++..+++. |+ +. ..+++.....+ + ...| .+..+|+.||++++++.+.++.. .+.|||||-+|.-
T Consensus 93 ~v~~~~~~----y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gvdg~w~D~~ 163 (317)
T cd06598 93 FVLKNSKN----WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGVTGWWGDLG 163 (317)
T ss_pred cccCCchh----HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCccEEEecCC
Confidence 33333221 11 11 12223332222 1 1233 23678999999999999999887 4899999999964
No 111
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=94.42 E-value=0.041 Score=50.19 Aligned_cols=46 Identities=24% Similarity=0.608 Sum_probs=35.4
Q ss_pred ceEEEEEe---ecCCCCCC-CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 143 ARYCALVG---DFNGWSPT-ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 143 a~~~~l~G---dfn~W~~~-~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
.+.++|+| +|++|++. +.+|+ ..+.+.|++.| .|+.+. .+ +|+|+.
T Consensus 14 ge~l~v~G~~~~lG~W~~~~a~~l~-----~~~~~~W~~~v--~l~~~~---~~---eYKy~~ 63 (95)
T cd05808 14 GQNVYVVGNVPELGNWSPANAVALS-----AATYPVWSGTV--DLPAGT---AI---EYKYIK 63 (95)
T ss_pred CCEEEEEeCcHHhCCCChhhCccCC-----CCCCCCEEEEE--EeCCCC---eE---EEEEEE
Confidence 47899999 59999976 45775 67889998887 456655 34 999986
No 112
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=94.14 E-value=0.035 Score=50.98 Aligned_cols=67 Identities=25% Similarity=0.570 Sum_probs=46.1
Q ss_pred cCCceEEEEEeecC---CCCC-CCcccccCCccCC----CCceEEEEEcccccCCCCCcchhhhhcccccccCCCCCCcc
Q 002609 140 APGARYCALVGDFN---GWSP-TENCAREGHLGHD----DYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGDSGVS 211 (900)
Q Consensus 140 ap~a~~~~l~Gdfn---~W~~-~~~~~~~~~~~~~----~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (900)
..-.+.|+|+||.. +|++ ++-+|. .. .+..|++.| .|+.|+ .+ ||+|+. .|.++
T Consensus 12 ~~~ge~v~i~Gs~~~LG~W~~~~a~~l~-----~~~~~~~~~~W~~~v--~lp~~~---~~---eYKy~i-~~~~g---- 73 (96)
T PF00686_consen 12 TQPGESVYIVGSCPELGNWDPKKAVPLQ-----WNEGTENYPIWSATV--DLPAGT---PF---EYKYVI-KDADG---- 73 (96)
T ss_dssp --TTEEEEEEESSGGGTTTSGGGSBESE-----BESSSSTTTSEEEEE--EEETTS---EE---EEEEEE-EETTS----
T ss_pred CCCCCEEEEEECcHHhCCCChHhccccc-----cccCCCCCCeEEEEE--ECcCCC---EE---EEEEEE-EeCCC----
Confidence 33457899999998 8998 555764 32 689999999 466766 44 999998 23322
Q ss_pred HHHHHHhccCCCCCCCcccccc
Q 002609 212 IQEIFKRANDEYWEPGEDRFVK 233 (900)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (900)
.-.||.|+.+.+.
T Consensus 74 ---------~~~WE~g~nR~~~ 86 (96)
T PF00686_consen 74 ---------NVIWESGENRVLT 86 (96)
T ss_dssp ---------EEEE-SSSEEEEE
T ss_pred ---------CEEECCCCCEEEE
Confidence 2369998777664
No 113
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.94 E-value=0.35 Score=54.16 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred ccCCC-CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHH
Q 002609 520 FHKYW-GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILAN 598 (900)
Q Consensus 520 ~~~~w-g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~ 598 (900)
..+.| |...+|+.+++.+++|++-+.--+ +.|+|||=+|.+.+-.+....-..+ .....+-+.+++.+.
T Consensus 128 ~n~~W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~---------~~~~~~m~~~i~~Ia 197 (315)
T TIGR01370 128 EDPDWPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNR---------PGAAAEMIAFVCEIA 197 (315)
T ss_pred CCCCCCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcc---------hhhHHHHHHHHHHHH
Confidence 45678 889999999999999998887665 7899999999876532211000000 001123456778888
Q ss_pred HHHHhcCCCEEEEEe
Q 002609 599 EILHALHPNIITIAE 613 (900)
Q Consensus 599 ~~l~~~~P~~ilIaE 613 (900)
..+|+.+|++++|.-
T Consensus 198 ~~ar~~~P~~~II~N 212 (315)
T TIGR01370 198 AYARAQNPQFVIIPQ 212 (315)
T ss_pred HHHHHHCCCEEEEec
Confidence 888999999999853
No 114
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=93.74 E-value=2.4 Score=55.53 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred cCCCC-CccccCC-----CHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHH
Q 002609 521 HKYWG-TRMFKYD-----DLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYL 594 (900)
Q Consensus 521 ~~~wg-~~~ln~~-----~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l 594 (900)
.--|| |..|.|+ +|...++|.+-.+--.+ -++|||+|.+++- ++...
T Consensus 470 vIvWGDcVKLRYG~~peDsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHST-------------------------PlhVa 522 (1464)
T TIGR01531 470 LICWGDSVKLRYGNKPEDSPYLWQHMKEYTEMTAR--IFDGVRIDNCHST-------------------------PIHVA 522 (1464)
T ss_pred EeeccceeeeccCCCCcCCHHHHHHHHHHHHHHHH--hhcceeeecccCC-------------------------cHHHH
Confidence 34564 5788886 48889998887777664 6899999988763 34455
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCC
Q 002609 595 ILANEILHALHPNIITIAEDATYY 618 (900)
Q Consensus 595 ~~~~~~l~~~~P~~ilIaE~~~~~ 618 (900)
+.+-+..++++|+.+++||-.+|.
T Consensus 523 eylLd~AR~vnPnLyV~AELFTGS 546 (1464)
T TIGR01531 523 EYLLDAARKYNPNLYVVAELFTGS 546 (1464)
T ss_pred HHHHHHHhhcCCCeEEEeeecCCc
Confidence 566677889999999999977653
No 115
>PRK10658 putative alpha-glucosidase; Provisional
Probab=93.48 E-value=0.1 Score=64.23 Aligned_cols=122 Identities=15% Similarity=0.264 Sum_probs=74.5
Q ss_pred hhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccc
Q 002609 425 VLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVG 501 (900)
Q Consensus 425 ~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~ 501 (900)
++..+++.|| ++|+|=.-+.. +|+-.+ |.-+ .+|- +.+.||+++|++|++|++-+.+ +.+.++.
T Consensus 288 ~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~-- 354 (665)
T PRK10658 288 FIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQKSP-- 354 (665)
T ss_pred HHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCCch--
Confidence 4777888887 34544321110 111112 2222 3444 4568999999999999998654 3333321
Q ss_pred cccCC-CCCCccccCCCCCcc---CCC--CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 502 LSQFD-GSNDCYFHTGKRGFH---KYW--GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 502 l~~fd-g~~~~yf~~~~~g~~---~~w--g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
.|+ +....||-...+|.. ..| ++..+|+.||++|++..+.++.++ ++|||||-.|...
T Consensus 355 --~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw~D~gE 418 (665)
T PRK10658 355 --LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFKTDFGE 418 (665)
T ss_pred --HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEEecCCc
Confidence 121 222234443333322 234 346789999999999999999977 7999999999543
No 116
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.14 E-value=0.18 Score=56.03 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=70.9
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEee-eeecCC---CCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFG-VVEHKD---YFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmP-v~e~~~---~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
+-..+.+ ++..+++.|| ++|+|=- -+.... +. -+|. -|..+ .+|- +.++||+++|++|++|++-+
T Consensus 23 s~~ev~~-v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLA-LMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHH-HHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 4445544 4788888777 5666511 011000 00 0111 12222 2454 46899999999999999988
Q ss_pred cccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 490 VHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 490 V~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
.+......... .|+. +..+.......-+...+|+.+|+.++...+.++.-+.++|||||-.|.
T Consensus 95 ~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~ 157 (292)
T cd06595 95 HPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDW 157 (292)
T ss_pred CCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 76532111100 0110 000000000000224679999999998878777667789999999994
No 117
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=92.97 E-value=0.29 Score=52.92 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHH
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNW 546 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~ 546 (900)
+.+++++.|..+|++|++|++=|-.+|.+.. | .....++-++.+++++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~---------------~---------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG---------------F---------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC---------------c---------------cccCCHHHHHHHHHHHHH
Confidence 4689999999999999999998865443321 0 011234566777778888
Q ss_pred HHHhcCccEEEecC
Q 002609 547 WVVEYQIDGFQFHS 560 (900)
Q Consensus 547 Wl~eygVDGFRfD~ 560 (900)
+++.||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88999999999994
No 118
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=92.85 E-value=0.17 Score=46.84 Aligned_cols=58 Identities=10% Similarity=0.236 Sum_probs=39.6
Q ss_pred EEEEEecC---CceEEEEEe---ecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 134 VDFMDWAP---GARYCALVG---DFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 134 ~~~~ewap---~a~~~~l~G---dfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
|+|+.=+| -.+.++|+| +|.+|+....||+- +....++.|++.| .|+.|+ .+ +|+|+.
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~--~~~~~~~~W~~~~--~lp~~~---~v---eyKyv~ 68 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQL--YYNSHSNDWRGTV--HLPAGR---NI---EFKAIK 68 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcc--ccCCCCCCEEEEE--EecCCC---cE---EEEEEE
Confidence 44554332 336899999 89999987556641 1125579999888 577776 34 899988
No 119
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.39 E-value=0.18 Score=61.67 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=27.6
Q ss_pred CCCCCCCeEEeC----CceEEEEEcCCCCcEEEEee
Q 002609 278 DLPSNLPYDVID----NGKDYDVFNVASDPRWQEKF 309 (900)
Q Consensus 278 ~~g~~lpa~~~~----~g~~F~l~sp~a~~V~l~l~ 309 (900)
++-..|+|++.+ +|++|+||||+|++|+|++.
T Consensus 12 ~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~d 47 (613)
T TIGR01515 12 RSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGD 47 (613)
T ss_pred ChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEe
Confidence 355678899887 79999999999999999973
No 120
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=92.39 E-value=0.56 Score=62.64 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcC--cEEEEeeccc--ccccccccc------cccCCCCCCccccCCCCCccCCCCCccccCCCHHH--
Q 002609 469 DDFKRLVDEAHGLG--LLVFLDIVHS--YSAADQMVG------LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDV-- 536 (900)
Q Consensus 469 ~elk~LV~~aH~~G--I~VILDvV~N--H~~~~~~~~------l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~v-- 536 (900)
++++++-+.|+++| |++|-|+-+. +-|.+. |. +..--|.++.+|... -..||.+.+|...-.-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADv-Wa~p~lF~l~~~aGAPPD~Fs~~----GQ~WG~P~y~p~~L~~~g 460 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSET-WSHPELFANGASIGAPPDELNPK----GQDWGLPPFDPLELERDG 460 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHH-hcCHhhhhcCCccCCCCCcCccc----cccCCCcCcCHHHHHhcC
Confidence 57888889999999 7889999753 222222 21 112235566666532 2578887776543211
Q ss_pred HHHHHHHHHHHHHhcCccEEEecCcccchhc---cCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEe
Q 002609 537 LHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT---HNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAE 613 (900)
Q Consensus 537 r~~lld~l~~Wl~eygVDGFRfD~~~~m~~~---~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE 613 (900)
-+.+++-++.-++ ++|++|+|-+-.+... ..|-+...|.|-.|+ ...++..+ .+.+..+++.+|||
T Consensus 461 Y~ww~~rlr~~m~--~~g~lRIDH~lGl~RlW~IP~g~ta~~G~yv~yP-------~~~ll~~l--aLEs~r~~~~VIgE 529 (1693)
T PRK14507 461 YAPFRALLRANMR--HAGALRIDHVMQLMRLFWIPLGRSAREGAYVAYP-------FEPMLAVL--ALESHRNRCLVIGE 529 (1693)
T ss_pred hHHHHHHHHHHHH--HCCEEEeccHHhhhHhcccCCCCCCCCCeEEECC-------HHHHHHHH--HHHHhcCCCeEEEe
Confidence 1345555665554 5899999965332210 112222223332221 12222222 12344558999999
Q ss_pred cCCCCC
Q 002609 614 DATYYP 619 (900)
Q Consensus 614 ~~~~~p 619 (900)
+...-|
T Consensus 530 DLGtVp 535 (1693)
T PRK14507 530 DLGTVP 535 (1693)
T ss_pred cCCCCC
Confidence 876433
No 121
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=91.98 E-value=2.4 Score=50.50 Aligned_cols=87 Identities=13% Similarity=0.278 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCcEEEEeeccccccccc-cccc------ccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHH
Q 002609 469 DDFKRLVDEAHGLGLLVFLDIVHSYSAADQ-MVGL------SQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLL 541 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~-~~~l------~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~ll 541 (900)
.++.++=.-|+++||.+|.|+-+.=..... .|.. ..-.|.++.+|.. .-..||.+..|.+.- ..
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~----~GQ~Wg~p~yn~~~l-----~~ 280 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNA----QGQDWGLPPYNPEAL-----KK 280 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCcccc----cccccCCCCCCHHHH-----HH
Confidence 456666667788999999999765332221 1111 1112334444432 225788775554322 22
Q ss_pred HHHHHHHHh-----cCccEEEecCcccc
Q 002609 542 SNLNWWVVE-----YQIDGFQFHSLSSM 564 (900)
Q Consensus 542 d~l~~Wl~e-----ygVDGFRfD~~~~m 564 (900)
+.-++|++- -.+|+.|+|-+..+
T Consensus 281 ~~y~wwierlr~~~~~~~~lRIDHf~Gl 308 (520)
T COG1640 281 DGYDWWIERLRANLKLYGILRIDHFRGL 308 (520)
T ss_pred cccHHHHHHHHHHHHhcCeeeeeeecch
Confidence 333444432 26899999976543
No 122
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.63 E-value=2.6 Score=47.46 Aligned_cols=159 Identities=11% Similarity=0.125 Sum_probs=89.9
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCc----------------------ccCCCCCCHHHHHHHHHHHh
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLY----------------------AVSSRYGTPDDFKRLVDEAH 479 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yf----------------------a~~~~yGt~~elk~LV~~aH 479 (900)
+.+.|+.+..+++|.++|= -.+ +|++....+- .....+=|.+|+|++|+-|.
T Consensus 19 ik~~id~ma~~K~N~lhlH-----ltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 92 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLH-----LND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAK 92 (326)
T ss_pred HHHHHHHHHHcCCceEEEe-----ecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHH
Confidence 3456899999999999871 111 2333221110 01122237999999999999
Q ss_pred hcCcEEEEeec-ccccccccccccccCCCCCCccccCCCCCccCCC-CCccccCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 002609 480 GLGLLVFLDIV-HSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYW-GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQ 557 (900)
Q Consensus 480 ~~GI~VILDvV-~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~w-g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFR 557 (900)
++||.||-.|- +.|+..-. ..+. .+..... ..+ .+..||..+|++.+++.+.+.-.++-|.. .
T Consensus 93 ~rgI~vIPEID~PGH~~a~~----~~~p-----el~~~~~---~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~---~ 157 (326)
T cd06564 93 DRGVNIIPEIDSPGHSLAFT----KAMP-----ELGLKNP---FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP---K 157 (326)
T ss_pred HcCCeEeccCCCcHHHHHHH----HhhH-----HhcCCCc---ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC---C
Confidence 99999998884 56654311 0110 0000000 112 23678999999999999999988864541 0
Q ss_pred ecCcccchhccCCccccCCChhhhhhcccchh-HHHHHHHHHHHHHhcCCCEEEEEec
Q 002609 558 FHSLSSMIYTHNGFASLTGDLEEYCNQYVDKD-ALLYLILANEILHALHPNIITIAED 614 (900)
Q Consensus 558 fD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~-a~~~l~~~~~~l~~~~P~~ilIaE~ 614 (900)
.+ .=|| |. +|++......+ -..|++.+...+++.+...++=.|.
T Consensus 158 ~~-~~Hi-----Gg-------DE~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~ 202 (326)
T cd06564 158 SD-TVHI-----GA-------DEYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDG 202 (326)
T ss_pred CC-EEEe-----cc-------ccccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 11 1112 11 12222111112 2357788888888876555554443
No 123
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.52 E-value=0.3 Score=60.92 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCcEEEEeecccccccccccccccCC-CCCCccccCCCCCc---cCCCC--CccccCCCHHHHHHHHHHH
Q 002609 471 FKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFD-GSNDCYFHTGKRGF---HKYWG--TRMFKYDDLDVLHFLLSNL 544 (900)
Q Consensus 471 lk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fd-g~~~~yf~~~~~g~---~~~wg--~~~ln~~~~~vr~~lld~l 544 (900)
.|.||+.+|++||++|+=|.+.=..+.. .|+ +....||-.+.+|. ...|. +.-+||.||++|++..+..
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d~~-----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~ 397 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQDSP-----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDK 397 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccCCc-----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHH
Confidence 3499999999999999988755333321 121 12223454444443 35564 4788999999999999655
Q ss_pred HHHHHhcCccEEEecCcc
Q 002609 545 NWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 545 ~~Wl~eygVDGFRfD~~~ 562 (900)
..-+.++|||||-.|.--
T Consensus 398 ~~~l~d~Gv~g~W~D~nE 415 (772)
T COG1501 398 KKNLLDLGVDGFWNDMNE 415 (772)
T ss_pred HhHHHhcCccEEEccCCC
Confidence 444449999999999644
No 124
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=91.23 E-value=0.2 Score=57.01 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=37.0
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCC-CCHHHHHHHHHHHhhcCcEEEEeecc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRY-GTPDDFKRLVDEAHGLGLLVFLDIVH 491 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~y-Gt~~elk~LV~~aH~~GI~VILDvV~ 491 (900)
++....+- |...+++|++.|...= --|+..- ...++|++|++.||+.||.||+||-.
T Consensus 12 ~~~~~~~y-i~~a~~~Gf~~iFTSL-----------------~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 12 SFEENKAY-IEKAAKYGFKRIFTSL-----------------HIPEDDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp -HHHHHHH-HHHHHCTTEEEEEEEE--------------------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred CHHHHHHH-HHHHHHCCCCEEECCC-----------------CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 55555554 7777889999997541 1111111 12689999999999999999999953
No 125
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=90.19 E-value=0.68 Score=52.40 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=64.9
Q ss_pred hhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccc
Q 002609 425 VLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVG 501 (900)
Q Consensus 425 ~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~ 501 (900)
++..+++.+| ++|+|=.=+. -+| .-|..+ .+|-.| ++||+++|++|++|++-+.+- ...
T Consensus 29 v~~~~r~~~IP~D~i~lDidy~------~~~---~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~----- 90 (332)
T cd06601 29 VVEGYRDNNIPLDGLHVDVDFQ------DNY---RTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-ISY----- 90 (332)
T ss_pred HHHHHHHcCCCCceEEEcCchh------cCC---CceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-eec-----
Confidence 4677777776 6666543111 112 123333 356544 789999999999999987532 110
Q ss_pred cccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 502 LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 502 l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
|. ...+.+.-.||.||++|++..+..+.+. +.|||||-.|.-
T Consensus 91 -----g~------------~~~~~~~~pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 91 -----GG------------GLGSPGLYPDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred -----Cc------------cCCCCceeeCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 10 0011234568999999999988888877 689999999953
No 126
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=90.11 E-value=0.39 Score=54.43 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=76.2
Q ss_pred ChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccCC-CCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 417 SFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVSS-RYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~~-~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+-..+.+ ++..+++.|| ++|+|=.=+ ..+|. .|..++ +|- +.+.||+++|++|++|++-+.+-
T Consensus 22 ~~~ev~~-~~~~~~~~~iP~d~i~lD~~~------~~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~- 87 (339)
T cd06603 22 DQEDVKE-VDAGFDEHDIPYDVIWLDIEH------TDGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH- 87 (339)
T ss_pred CHHHHHH-HHHHHHHcCCCceEEEEChHH------hCCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-
Confidence 3344444 4788888887 556553211 01222 133343 554 45889999999999999987643
Q ss_pred cccccccccccCC-CCCCccccCCCCC---ccCCC-C-CccccCCCHHHHHHHHHHHHHHHH--hcCccEEEecCc
Q 002609 494 SAADQMVGLSQFD-GSNDCYFHTGKRG---FHKYW-G-TRMFKYDDLDVLHFLLSNLNWWVV--EYQIDGFQFHSL 561 (900)
Q Consensus 494 ~~~~~~~~l~~fd-g~~~~yf~~~~~g---~~~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~--eygVDGFRfD~~ 561 (900)
+..+.. ...|. +....||-.+..| ....| | +..+|+.||+++++..+-++..+. ..++|||-+|..
T Consensus 88 v~~~~~--~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 88 IKRDDG--YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred eecCCC--CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 222210 00111 1112233322222 11234 2 357899999999999999998875 469999999953
No 127
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.84 E-value=0.92 Score=46.20 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.2
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
.+..++++|+++|-|+ ...+...-+.|+.+....-..+..+-|..+.++|.+.||+|++-+-++
T Consensus 25 ~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 25 EFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 3899999999999776 222223334455542222223567889999999999999999988644
No 128
>PRK12313 glycogen branching enzyme; Provisional
Probab=89.40 E-value=0.5 Score=58.08 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=35.5
Q ss_pred CCCCCCCeEEeCC----ceEEEEEcCCCCcEEEEe-ecCCCCCCceeeeeee-cCccE
Q 002609 278 DLPSNLPYDVIDN----GKDYDVFNVASDPRWQEK-FRSKEPPIPYWLETRK-GRKAW 329 (900)
Q Consensus 278 ~~g~~lpa~~~~~----g~~F~l~sp~a~~V~l~l-~~~~~~~~~~~~~~~~-~~~vW 329 (900)
++...|+|++.++ |++|+||||.|++|+|+. |..-.. ...+|.+ .+|+|
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~---~~~~m~~~~~Gvw 76 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRG---NAHPLVRRESGVW 76 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCc---ccccccccCCCEE
Confidence 4667899998887 899999999999999995 322111 1245655 56777
No 129
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=89.33 E-value=1.1 Score=50.58 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=78.0
Q ss_pred hHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccc
Q 002609 420 EFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQM 499 (900)
Q Consensus 420 g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~ 499 (900)
|-...++..||+.|+|+|-|=- +-.|. + .-+-+.+...+|.++|+++||+|+||+=|+.+-.+.
T Consensus 24 G~~~d~~~ilk~~G~N~vRlRv-wv~P~---------~-----~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP- 87 (332)
T PF07745_consen 24 GQEKDLFQILKDHGVNAVRLRV-WVNPY---------D-----GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP- 87 (332)
T ss_dssp SSB--HHHHHHHTT--EEEEEE--SS-T---------T-----TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-
T ss_pred CCCCCHHHHHHhcCCCeEEEEe-ccCCc---------c-----cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-
Confidence 3344579999999999997754 22221 1 456678999999999999999999999766543321
Q ss_pred cccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhcc-CCccccCCCh
Q 002609 500 VGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTH-NGFASLTGDL 578 (900)
Q Consensus 500 ~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~-~g~~~~~g~~ 578 (900)
+.......|....++-=...|.+|-.++|.... ..|+. .|.|. ++..- .|+ .
T Consensus 88 ----------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~-~~G~~---pd~VQ-VGNEin~Gm---l--- 140 (332)
T PF07745_consen 88 ----------------GKQNKPAAWANLSFDQLAKAVYDYTKDVLQALK-AAGVT---PDMVQ-VGNEINNGM---L--- 140 (332)
T ss_dssp ----------------TB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHH-HTT-----ESEEE-ESSSGGGES---T---
T ss_pred ----------------CCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCC---ccEEE-eCccccccc---c---
Confidence 111112345332222222456677777777654 55554 66543 22110 111 0
Q ss_pred hhhhhcccchh-HHHHHHHHHHHHHhcCCCEEEEE
Q 002609 579 EEYCNQYVDKD-ALLYLILANEILHALHPNIITIA 612 (900)
Q Consensus 579 ~~~~~~~~d~~-a~~~l~~~~~~l~~~~P~~ilIa 612 (900)
+-.+...+-+ -..++......+++..|++.++-
T Consensus 141 -wp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 141 -WPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp -BTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred -CcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 0000011112 23456667788999998876654
No 130
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=89.28 E-value=0.57 Score=44.97 Aligned_cols=57 Identities=26% Similarity=0.534 Sum_probs=41.4
Q ss_pred EEEEEecC---CceEEEEEee---cCCCCCC-CcccccCCccCC--CCceEEEEEcccccCCCCCcchhhhhccccccc
Q 002609 134 VDFMDWAP---GARYCALVGD---FNGWSPT-ENCAREGHLGHD--DYGYWFIILEDKLREGEKPDELYFQQYNYVDDY 203 (900)
Q Consensus 134 ~~~~ewap---~a~~~~l~Gd---fn~W~~~-~~~~~~~~~~~~--~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 203 (900)
|+|+.=+| --+.|+|+|| |++|++. +.+|+ .. +.+.|+..| .|+.+. .+ +|+|++..
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~-----~~~~~~~~W~~~v--~lp~~~---~v---eYkY~~~~ 68 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLE-----KEDDDCNLWKASI--ELPRGV---DF---QYRYFVAV 68 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCc-----cCCCcCCccEEEE--EECCCC---eE---EEEEEEEE
Confidence 56666665 3457999999 9999954 44775 44 789998887 456665 34 89999854
No 131
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.14 E-value=1.8 Score=49.47 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhc
Q 002609 472 KRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEY 551 (900)
Q Consensus 472 k~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~ey 551 (900)
++||..||++|++|++..-+. + -...+++.|+-+++++.-++++|
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~--------------------~---------------~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP--------------------L---------------EQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC--------------------H---------------HHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999752000 0 02457888998898888899999
Q ss_pred CccEEEecCcccchhccCCccccCCChhhhhhcccchhH-HHHHHHHHHHHHhcCCC
Q 002609 552 QIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDA-LLYLILANEILHALHPN 607 (900)
Q Consensus 552 gVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a-~~~l~~~~~~l~~~~P~ 607 (900)
|+||+-+|--.-. .. + ..+.+. ..+++++++.+++..++
T Consensus 112 gfDGIdIDwE~p~------~~----~-------~~d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 112 FMDGINIDIEQPI------TK----G-------SPEYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred CCCeEEEcccCCC------CC----C-------cchHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999942110 00 0 011222 46788888888876554
No 132
>PRK14706 glycogen branching enzyme; Provisional
Probab=88.75 E-value=0.49 Score=58.09 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CCCCCCCeEEeCC----ceEEEEEcCCCCcEEEEeecCCCCCCceeeeeee-cCccE
Q 002609 278 DLPSNLPYDVIDN----GKDYDVFNVASDPRWQEKFRSKEPPIPYWLETRK-GRKAW 329 (900)
Q Consensus 278 ~~g~~lpa~~~~~----g~~F~l~sp~a~~V~l~l~~~~~~~~~~~~~~~~-~~~vW 329 (900)
++-..|+|+...+ |++|+||||.|++|+|++.-..-.. ...+|.+ ..|+|
T Consensus 22 ~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~--~~~pM~~~~~GvW 76 (639)
T PRK14706 22 RPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG--FDHPMQRLDFGFW 76 (639)
T ss_pred chhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc--ccccccccCCCEE
Confidence 3556788887664 7999999999999999984322111 1134654 45667
No 133
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=88.20 E-value=0.87 Score=57.90 Aligned_cols=126 Identities=17% Similarity=0.288 Sum_probs=75.0
Q ss_pred hhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCCcccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 419 NEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNLYAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~yfa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
..+.+ ++..+++.|| ++|||=- .+. .||.. |..+ .+|- +.++||+.+|++|++||+=+.+ ++.
T Consensus 201 ~eV~e-va~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~ 266 (978)
T PLN02763 201 KRVAE-IARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIK 266 (978)
T ss_pred HHHHH-HHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCc
Confidence 34443 4778888887 6676531 111 13332 3333 3565 4579999999999999875433 333
Q ss_pred cccccccccCC-CCCCccccCCCCCc---cCCC-C-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCc
Q 002609 496 ADQMVGLSQFD-GSNDCYFHTGKRGF---HKYW-G-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 496 ~~~~~~l~~fd-g~~~~yf~~~~~g~---~~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~ 561 (900)
.+. +...|+ |....+|-...+|. ...| | +.-.||.||++|++..+.++.++ +.|||||-.|.-
T Consensus 267 ~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 267 AEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred cCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 221 111121 11222333222231 1345 2 24569999999999999999887 699999999963
No 134
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=86.98 E-value=4.5 Score=46.12 Aligned_cols=120 Identities=13% Similarity=0.051 Sum_probs=70.9
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC-------CCCCCHHHHHHHHHHHhhcCcEEEEeec-cccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS-------SRYGTPDDFKRLVDEAHGLGLLVFLDIV-HSYS 494 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~-------~~yGt~~elk~LV~~aH~~GI~VILDvV-~NH~ 494 (900)
.++|+.+..+.+|.++|== ....+|.+....|=.+. ..|=|.+|+|++|+-|.++||.||-.|- +.|+
T Consensus 21 k~~Id~ma~~KlN~lh~Hl----tDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~ 96 (348)
T cd06562 21 KRTIDAMAYNKLNVLHWHI----TDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHT 96 (348)
T ss_pred HHHHHHHHHhCCcEEEEeE----EcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCchhh
Confidence 3568999999999998621 01112333332222211 1122799999999999999999999984 6776
Q ss_pred ccccccccc-cCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 495 AADQMVGLS-QFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 495 ~~~~~~~l~-~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
..-...... ...+.. ++.. ....-.+..||..+|++.+++.+.+.-.++-|.
T Consensus 97 ~a~~~~~p~l~~~~~~--~~~~----~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 97 GSWGQGYPELLTGCYA--VWRK----YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred HHHHHhChhhhCCCCc--cccc----cccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 542110000 000000 0000 000002246899999999999999999986444
No 135
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.84 E-value=2 Score=49.36 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=65.2
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCC--CHHHHHHHHHHHhhcCcEEEEeeccccccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYG--TPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMV 500 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yG--t~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~ 500 (900)
++-|..+|++|+|+|.|-.+.-.. ++|.=| .-+.|.++|+.|+++||+|||-+. .++.+.
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~--------------lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~P~--- 74 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSW--------------LEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAPPA--- 74 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHH--------------H-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-H---
T ss_pred HHHHHHHHHcCCCEEEEEEechhh--------------ccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cccccc---
Confidence 334999999999999986653211 111111 134588999999999999999876 222221
Q ss_pred ccccCCCCCCccccCCCCCccCCCCC-ccccCCCHHHHHHHHHHHHHHHHhcC----ccEEEecC
Q 002609 501 GLSQFDGSNDCYFHTGKRGFHKYWGT-RMFKYDDLDVLHFLLSNLNWWVVEYQ----IDGFQFHS 560 (900)
Q Consensus 501 ~l~~fdg~~~~yf~~~~~g~~~~wg~-~~ln~~~~~vr~~lld~l~~Wl~eyg----VDGFRfD~ 560 (900)
++. +..+ .--..+..|....+|. ..+++.+|..|+++...++..++.|+ |-|+-+|.
T Consensus 75 Wl~--~~~P-e~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 75 WLY--DKYP-EILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHH--CCSG-CCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred chh--hhcc-cccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 111 1100 0011122333333443 45678899999888877766666554 66777764
No 136
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=86.17 E-value=24 Score=39.06 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=91.9
Q ss_pred hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHH-HHHHH-HHHhhcCcEEEEeeccccccc
Q 002609 419 NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDD-FKRLV-DEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~e-lk~LV-~~aH~~GI~VILDvV~NH~~~ 496 (900)
..=.++.|.+|+++|+|+|+|-+..+..+.+. .+ .-|=|+.+.--..| |-+.+ +...+.|++|..-+-.=
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~--~~--~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvl---- 87 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGN--AD--AVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVL---- 87 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCc--ee--eEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehh----
Confidence 33345679999999999999999887655431 11 12223444433445 44545 34448999998877531
Q ss_pred ccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEe-cCcccchhccCCccccC
Q 002609 497 DQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQF-HSLSSMIYTHNGFASLT 575 (900)
Q Consensus 497 ~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRf-D~~~~m~~~~~g~~~~~ 575 (900)
.|+-....+...........-+..-|..-+|++|+.|.+...-...--.|||+=| |-+ ++. |
T Consensus 88 -------af~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa--~L~-D------- 150 (294)
T PF14883_consen 88 -------AFDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDA--VLS-D------- 150 (294)
T ss_pred -------hccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCc--ccc-c-------
Confidence 2221110110000000001112344566689999999999888875559999888 322 111 1
Q ss_pred CChhhhhhccc-------chhHHHHHHHHHHHHHhcCCCEEE
Q 002609 576 GDLEEYCNQYV-------DKDALLYLILANEILHALHPNIIT 610 (900)
Q Consensus 576 g~~~~~~~~~~-------d~~a~~~l~~~~~~l~~~~P~~il 610 (900)
++ ...... ...-+.|..++.+.++...|++.+
T Consensus 151 --~E-~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 151 --FE-IAAIRQNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred --hh-hhhhccChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 11 000000 012256888888889988887654
No 137
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=85.60 E-value=2.2 Score=35.45 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeEEEEEcCcEEEEEEE
Q 002609 815 GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYKL 894 (900)
Q Consensus 815 ~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~~l~LP~rsa~Vl~~ 894 (900)
+.++|++|++.++. ++.+ +..++.+++.... ...++|||+.+.||+.
T Consensus 12 ~~y~F~~N~s~~~~----~v~l--~~~~~dll~g~~~---------------------------~~~~~L~p~~v~Vl~~ 58 (58)
T PF08533_consen 12 GRYLFLLNFSDEPQ----TVTL--PESYTDLLTGETV---------------------------SGGLTLPPYGVRVLKE 58 (58)
T ss_dssp TTEEEEEE-SSS-E----E------TT-EEEES----------------------------------SEE-TTEEEEEE-
T ss_pred CEEEEEEECCCCCE----EEEc--CCCceecccCcce---------------------------eeEEEECCCEEEEEEC
Confidence 48999999998842 4555 3456777754221 1227899999999973
No 138
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=85.55 E-value=3.6 Score=51.00 Aligned_cols=130 Identities=20% Similarity=0.330 Sum_probs=76.4
Q ss_pred CChhhHHHhhhhHHHHcCcc--eEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 416 SSFNEFTEKVLPHVKEAGYN--VIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn--~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+++..+.+- ..++.++|+. ++|.= |-=-..+ .||..=+..|++ |+.+|+.+|++|+++|+=+-++-
T Consensus 308 ~nls~~~dv-v~~~~~agiPld~~~~D-iDyMd~y-------kDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDV-VENYRAAGIPLDVIVID-IDYMDGY-------KDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHH-HHHHHHcCCCcceeeee-hhhhhcc-------cceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 456666654 8999999985 44321 1000111 343333344555 99999999999999987665321
Q ss_pred cccccccccccCC-CCCCccccCCCCCcc----CCC-C-CccccCCCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 494 SAADQMVGLSQFD-GSNDCYFHTGKRGFH----KYW-G-TRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 494 ~~~~~~~~l~~fd-g~~~~yf~~~~~g~~----~~w-g-~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
..... ...|+ |.....+..+..|.. ..| | ..-.|+.+|.+..+..+.++-.-++.++|||-+|+
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 11111 00111 111112221212211 233 2 25678999999999999998888899999999995
No 139
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=85.44 E-value=1.2 Score=49.72 Aligned_cols=51 Identities=25% Similarity=0.278 Sum_probs=34.1
Q ss_pred hhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 426 L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
|+...+.|++-|...= ..-.... . +-..-|++|++.||+.|++||+||-+.
T Consensus 22 i~~~~~~Gf~~IFtsl-~~~~~~~------~---------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 22 IDRMHKYGFKRIFTSL-LIPEEDA------E---------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHcCccceeeec-ccCCchH------H---------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 6666789999885321 1111000 0 124569999999999999999999643
No 140
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=84.97 E-value=2.5 Score=37.68 Aligned_cols=68 Identities=15% Similarity=0.352 Sum_probs=35.6
Q ss_pred CCCeEEEEEc----CcEEEEEeCCCCCcccceEEeccCCCeEEEEecCCCcccCCcccccccccceeeeeccccCcceeE
Q 002609 805 DAKMVICYMR----GPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCI 880 (900)
Q Consensus 805 ~~~~Vlaf~R----~~llvV~Nf~~~~s~~~~~i~lp~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~~~~ 880 (900)
+.++|++|.| +.++||+|.++.+. ++.+. +|.+++.+.. .|...+... ...+ .-
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~~~~----~ldl~---ry~E~l~~~~---~~~diltg~-------~i~l-----~~ 64 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKNDKEQ----TLDLK---RYAEVLGGFT---SAKDILTGK-------TIDL-----SK 64 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SSS-E----EEEGG---GGHHHHTT-----EEEETTT---------EEE------SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCCCCe----EEcHH---HHHHhhCCCc---ceEECCCCC-------EEec-----CC
Confidence 4567999999 38999999998732 45542 3333332211 011111110 0111 13
Q ss_pred EEEEcCcEEEEEEE
Q 002609 881 EVPLPSRTAQVYKL 894 (900)
Q Consensus 881 ~l~LP~rsa~Vl~~ 894 (900)
.|+|||++++||..
T Consensus 65 ~l~l~~~~~~ILel 78 (78)
T PF10438_consen 65 NLTLPPKSVLILEL 78 (78)
T ss_dssp EEEE-TTEEEEEEE
T ss_pred cEEECCCceEEEEC
Confidence 69999999999863
No 141
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=84.33 E-value=1.6 Score=47.65 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=60.0
Q ss_pred CChhhHHHhhhhHHHHcCc--ceEEEeeeeecCCCCCCCCccCCC-cccC-CCCCCHHHHHHHHHHHhhcCcEEEEeecc
Q 002609 416 SSFNEFTEKVLPHVKEAGY--NVIQLFGVVEHKDYFTVGYRVTNL-YAVS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVH 491 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGv--n~I~LmPv~e~~~~~~wGY~~~~y-fa~~-~~yGt~~elk~LV~~aH~~GI~VILDvV~ 491 (900)
.+-..+.+ ++..+++.|| ++|+|=.=+.. .-.+| +..+ .+|.. .++||+.+|++|++|++-+.+
T Consensus 21 ~~~~~v~~-~~~~~~~~~iP~d~~~lD~~~~~--------~~~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 21 GDQDKVLE-VIDGMRENDIPLDGFVLDDDYTD--------GYGDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCccEEEECccccc--------CCceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEeCh
Confidence 35556655 4888888776 56766432221 11121 1333 35654 578999999999999998742
Q ss_pred cccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 492 SYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 492 NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
. |+++..+.++..+.++|||||-+|...
T Consensus 89 ~-------------------------------------------v~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 89 Y-------------------------------------------IREWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred h-------------------------------------------HHHHHHHHHHHhhccCCCCEEeccCCC
Confidence 1 266677777766568999999999653
No 142
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=83.97 E-value=7.8 Score=44.12 Aligned_cols=149 Identities=17% Similarity=0.070 Sum_probs=81.2
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL 502 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l 502 (900)
++.+.-+|++|..-|-|+.-+. .+..-|-=..++|..++..+ ..+=+++|+++|+++||++.+ -+++. .-+ -
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---~ 165 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---H 165 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC---C
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc---C
Confidence 4568889999999998876543 22222332344555555333 358899999999999999998 33333 211 0
Q ss_pred ccCCCCCCccccCCCCCccCCCCCccccCC-CHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhh
Q 002609 503 SQFDGSNDCYFHTGKRGFHKYWGTRMFKYD-DLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEY 581 (900)
Q Consensus 503 ~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~-~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~ 581 (900)
..| .....+. ..+.....-. ...+.+++..-++-.++.|.+|.+=||+.....
T Consensus 166 -------~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~---------------- 219 (346)
T PF01120_consen 166 -------PDY-PPDEEGD--ENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP---------------- 219 (346)
T ss_dssp -------TTT-TSSCHCH--HCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC----------------
T ss_pred -------ccc-CCCccCC--cccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc----------------
Confidence 000 0000000 0000000000 112455888889999999999999999753210
Q ss_pred hhcccchhHHHHHHHHHHHHHhcCCCEEEEE
Q 002609 582 CNQYVDKDALLYLILANEILHALHPNIITIA 612 (900)
Q Consensus 582 ~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIa 612 (900)
.+.. ....+...+++..|++++..
T Consensus 220 ------~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 220 ------DEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp ------CTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred ------cccc-CHHHHHHHHHHhCCeEEEec
Confidence 0111 12456678888999888764
No 143
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=83.25 E-value=14 Score=40.70 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=40.1
Q ss_pred hHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCC-CHHHHH---HHHHHHhhcCcEEEEeeccc
Q 002609 420 EFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYG-TPDDFK---RLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 420 g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yG-t~~elk---~LV~~aH~~GI~VILDvV~N 492 (900)
|..+.++.-||+.|||.|-|- |+..|+..+ ...|| .-.|++ ++-+.|.+.||+|++|+-|+
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsn-----------gn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYS 127 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSN-----------GNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYS 127 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCC-----------CCccCCCcchHHHHHHHHHHHHhcCcEEEeeccch
Confidence 556667999999999999774 343443210 12232 344444 45567888999999999654
No 144
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=83.16 E-value=1.5 Score=39.76 Aligned_cols=66 Identities=24% Similarity=0.504 Sum_probs=42.5
Q ss_pred cCCceEEEEEeecC---CCCCC-CcccccCCccCCC-CceEEEEEcccccC--CCCCcchhhhhcccccccCCCCCCccH
Q 002609 140 APGARYCALVGDFN---GWSPT-ENCAREGHLGHDD-YGYWFIILEDKLRE--GEKPDELYFQQYNYVDDYDKGDSGVSI 212 (900)
Q Consensus 140 ap~a~~~~l~Gdfn---~W~~~-~~~~~~~~~~~~~-~g~w~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (900)
..--+.++|+||.. +|++. +.+|+ ..+ .+.|++.|+ |+. +. . .+|+|+. ++++ +
T Consensus 10 t~~Ge~l~v~G~~~~LG~W~~~~a~~m~-----~~~~~~~W~~~v~--~~~~~~~---~---~~yKy~~-~~~~-~---- 70 (96)
T cd05467 10 TQFGQSVYVVGSHPELGNWDPAKALRLN-----TSNSYPLWTGEIP--LPAPEGQ---V---IEYKYVI-VDDD-G---- 70 (96)
T ss_pred CCCCCEEEEEeCcHHhCCcChhcCcccc-----CCCCCCcEEEEEE--ecCCCCC---e---EEEEEEE-ECCC-C----
Confidence 34456899999975 99974 44664 565 899998885 333 33 3 3899987 2322 1
Q ss_pred HHHHHhccCCCCCCCccccc
Q 002609 213 QEIFKRANDEYWEPGEDRFV 232 (900)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~ 232 (900)
.-.||.|..+.+
T Consensus 71 --------~~~wE~~~~r~~ 82 (96)
T cd05467 71 --------NVQWESGSNRVL 82 (96)
T ss_pred --------CEEeccCCCeEE
Confidence 235888765544
No 145
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=82.84 E-value=3.5 Score=44.60 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHH
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWW 547 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~W 547 (900)
+.++..++++||++|++|++=|- ++... .+. . -..+++.|+-+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~--------------~~~-------------~--~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP--------------EFT-------------A--ALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC--------------cch-------------h--hhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998652 11100 000 0 235688899999999999
Q ss_pred HHhcCccEEEecC
Q 002609 548 VVEYQIDGFQFHS 560 (900)
Q Consensus 548 l~eygVDGFRfD~ 560 (900)
+++|++||+-+|-
T Consensus 95 ~~~~~~DGIdiDw 107 (253)
T cd06545 95 VVSYNLDGIDVDL 107 (253)
T ss_pred HHHhCCCceeEEe
Confidence 9999999999994
No 146
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=82.41 E-value=1.9 Score=39.94 Aligned_cols=45 Identities=16% Similarity=0.488 Sum_probs=32.9
Q ss_pred eEEEEEee---cCCCCCCC-cccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 144 RYCALVGD---FNGWSPTE-NCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 144 ~~~~l~Gd---fn~W~~~~-~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
+.++|+|+ +.+|++.. -+|. ..+...|+..| .|+.+. .+ +|+|++
T Consensus 14 e~l~v~Gs~~~LG~W~~~~a~~m~-----~~~~~~W~~~v--~lp~~~---~v---eYKY~i 62 (100)
T cd05817 14 EAVYISGNCNQLGNWNPSKAKRMQ-----WNEGDLWTVDV--GIPESV---YI---EYKYFV 62 (100)
T ss_pred CEEEEEeCcHHHCCCCccccCccc-----CCCCCCEEEEE--EECCCC---cE---EEEEEE
Confidence 68999999 78999754 3664 56678998887 344443 23 899987
No 147
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.08 E-value=20 Score=40.11 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=67.6
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec-ccccccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV-HSYSAADQMVG 501 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV-~NH~~~~~~~~ 501 (900)
.+.|+.++.+|+|.++|==--.+ .|.-.-........=|.+|++++|+-|.++||+||-.|- +.|+..--
T Consensus 20 k~~id~ma~~k~N~l~lhl~D~f------~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l--- 90 (301)
T cd06565 20 KKLLRLLALLGANGLLLYYEDTF------PYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFIL--- 90 (301)
T ss_pred HHHHHHHHHcCCCEEEEEEecce------ecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHH---
Confidence 34599999999999988322111 111111111112222799999999999999999998763 45543211
Q ss_pred cccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 502 LSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 502 l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
. . ..|-...+.. -....||-.+|++.+++.+.+.-.++-|.
T Consensus 91 -~-~----~~~~~l~~~~----~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 91 -K-H----PEFRHLREVD----DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred -h-C----cccccccccC----CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 0 0 0111100000 01356899999999999999999886544
No 148
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=81.72 E-value=3.6 Score=37.60 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=37.3
Q ss_pred EEEEEecC---CceEEEEEeec---CCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 134 VDFMDWAP---GARYCALVGDF---NGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 134 ~~~~ewap---~a~~~~l~Gdf---n~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
|+|+.=+| +-+.++|+|+- -+|+. +.+|+ ..+.+.|+..+ .|+.++ . .+|+|+.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~-----~~~~~~W~~~v--~lp~~~---~---ieYky~~ 62 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQ-----YVKDGFWSASV--SLPVDT---H---VEWKFVL 62 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCc-----CCCCCCEEEEE--EecCCC---c---EEEEEEE
Confidence 44444333 33567899974 69996 77885 56788998877 466665 2 4889987
No 149
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=81.15 E-value=26 Score=40.57 Aligned_cols=116 Identities=23% Similarity=0.167 Sum_probs=73.2
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGL 502 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l 502 (900)
++.+.-+|+.|...|-|+.-+. .+..-|-=..++|.+++..+ ..+=+++|+++|+++||++-+ -|+ ..+ |
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHH-DGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y~S--~~D--W-- 153 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHH-DGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--YHS--LFD--W-- 153 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeec-CCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--EcC--HHH--h--
Confidence 4568889999999988776543 22223333345666666555 468899999999999999998 222 111 1
Q ss_pred ccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHH---HHHHHHHHHhcCccEEEecCc
Q 002609 503 SQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFL---LSNLNWWVVEYQIDGFQFHSL 561 (900)
Q Consensus 503 ~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~l---ld~l~~Wl~eygVDGFRfD~~ 561 (900)
+ ++.|... +.........+...+|+ ..-++-.++.||-|.+=||+.
T Consensus 154 --~---~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 154 --F---NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred --C---CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 0 1111110 00001112334556777 778888888999999999965
No 150
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=80.90 E-value=5.2 Score=44.81 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHH
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNW 546 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~ 546 (900)
+..++++-|++||++|++|||-|= |.. + . .....+.-++.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiG----------------G~~---------~------~--~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIG----------------GAN---------G------H--VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEe----------------CCC---------C------c--cccCCHHHHHHHHHHHHH
Confidence 568899999999999999998651 100 0 0 013456678888999999
Q ss_pred HHHhcCccEEEecC
Q 002609 547 WVVEYQIDGFQFHS 560 (900)
Q Consensus 547 Wl~eygVDGFRfD~ 560 (900)
++++|++||+-||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999994
No 151
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=80.67 E-value=15 Score=41.62 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=89.1
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC------------CCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS------------SRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~------------~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
.+.|+.+...++|.++|=-.= ..+|......|=.+. ..+=|.+|+|+||+-|.++||.||-.|-
T Consensus 21 k~~id~ma~~KlN~lhlHLtD----~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD 96 (329)
T cd06568 21 KRYIDLLALYKLNVLHLHLTD----DQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEID 96 (329)
T ss_pred HHHHHHHHHhCCcEEEEEeec----CCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 345899999999999884321 112333333221111 1122799999999999999999999885
Q ss_pred -ccccccccccccccC--CCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhc
Q 002609 491 -HSYSAADQMVGLSQF--DGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYT 567 (900)
Q Consensus 491 -~NH~~~~~~~~l~~f--dg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~ 567 (900)
+.|+..--.. ...+ .+.....+. ....++..||..+|++.+++.+.+.-.++-|- . . +.
T Consensus 97 ~PGH~~a~~~~-~p~l~~~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~-------~-~---~i 158 (329)
T cd06568 97 MPGHTNAALAA-YPELNCDGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTP-------G-P---YI 158 (329)
T ss_pred CcHHHHHHHHh-ChhhccCCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCC-------C-C---eE
Confidence 5665431100 0001 110000000 01123467899999999999999888874321 1 1 11
Q ss_pred cCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEEe
Q 002609 568 HNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIAE 613 (900)
Q Consensus 568 ~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIaE 613 (900)
|=|. +|+.... ...-..|++.+.+.+++.+...++=.|
T Consensus 159 HiGg-------DE~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d 196 (329)
T cd06568 159 HIGG-------DEAHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQE 196 (329)
T ss_pred EEec-------ccCCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECc
Confidence 2121 1221110 111235778888888877655544444
No 152
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=80.16 E-value=3.6 Score=38.02 Aligned_cols=56 Identities=16% Similarity=0.401 Sum_probs=38.6
Q ss_pred EEEEEecCC---ceEEEEEee---cCCCCCCC-cccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 134 VDFMDWAPG---ARYCALVGD---FNGWSPTE-NCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 134 ~~~~ewap~---a~~~~l~Gd---fn~W~~~~-~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
|+|+.=+|. -+.++|+|+ +.+|++.. .+|+ ..++..|++.++ ++.+. +-.+|+|+.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~-----~~~~~~W~~~v~--~p~~~-----~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLS-----DVGFPIWEADID--ISKDS-----FPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCC-----CCCCCcEEEEEE--eCCCC-----ccEEEEEEE
Confidence 567776664 357999998 57999754 3664 678899998874 34332 124889986
No 153
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.20 E-value=13 Score=41.88 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=72.1
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC-----CCCCCHHHHHHHHHHHhhcCcEEEEeec-ccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS-----SRYGTPDDFKRLVDEAHGLGLLVFLDIV-HSYSA 495 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~-----~~yGt~~elk~LV~~aH~~GI~VILDvV-~NH~~ 495 (900)
+.+.|+.+..+++|.++|==. ...+|.+....|=.+. ..|=|.+|+|++|+-|.++||+||-.|- +.|+.
T Consensus 20 ik~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~~ 95 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLT----DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHAS 95 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEe----cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccchH
Confidence 345699999999998876311 1113433333322211 2233799999999999999999999884 67765
Q ss_pred cccccccccCCCCCCccccCCCCCccCCCCC--ccccCCCHHHHHHHHHHHHHHHHhc
Q 002609 496 ADQMVGLSQFDGSNDCYFHTGKRGFHKYWGT--RMFKYDDLDVLHFLLSNLNWWVVEY 551 (900)
Q Consensus 496 ~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~--~~ln~~~~~vr~~lld~l~~Wl~ey 551 (900)
.-.... ..+.-....+ .....|+. +.||..+|++.+++.+.+.-.++-|
T Consensus 96 a~~~~y-pel~~~~~~~------~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 96 AIAVAY-PELASGPGPY------VIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred HHHHhC-HHhccCCCcc------ccccccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 321000 0000000000 01123433 5689999999999999999888544
No 154
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=78.13 E-value=2.5 Score=39.39 Aligned_cols=50 Identities=14% Similarity=0.422 Sum_probs=32.4
Q ss_pred ceEEEEEeec---CCCCCC-CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 143 ARYCALVGDF---NGWSPT-ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 143 a~~~~l~Gdf---n~W~~~-~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
-+.++|+||. .+|+.. +.+|+... ...+.+.|++.+ .|+.+. . .+|+|++
T Consensus 20 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~t~~~~~W~~~v--~lp~~~---~---veYKy~~ 73 (106)
T cd05811 20 GENIKIVGSIPQLGNWDTSSAVALSASQ-YTSSNPLWSVTI--PLPAGT---S---FEYKFIR 73 (106)
T ss_pred CCeEEEEeCcHHHCCCChhhCccccccc-CccCCCcEEEEE--EeCCCC---c---EEEEEEE
Confidence 3569999985 589975 44553100 013568999988 355554 3 4999986
No 155
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=77.35 E-value=3.3 Score=46.09 Aligned_cols=47 Identities=26% Similarity=0.457 Sum_probs=28.3
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
.+-+++||+||+|+|-+- +++|.- ..+++..+ +-++||.||+||---
T Consensus 56 ~rDi~~l~~LgiNtIRVY-------------------~vdp~~-nHd~CM~~---~~~aGIYvi~Dl~~p 102 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVY-------------------SVDPSK-NHDECMSA---FADAGIYVILDLNTP 102 (314)
T ss_dssp HHHHHHHHHHT-SEEEES----------------------TTS---HHHHHH---HHHTT-EEEEES-BT
T ss_pred HHhHHHHHHcCCCEEEEE-------------------EeCCCC-CHHHHHHH---HHhCCCEEEEecCCC
Confidence 334999999999999753 444432 34555544 556899999999644
No 156
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=77.23 E-value=2.8 Score=50.99 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=24.2
Q ss_pred CCCCCCeEEeCC---ceEEEEEcCCCCcEEEEeec
Q 002609 279 LPSNLPYDVIDN---GKDYDVFNVASDPRWQEKFR 310 (900)
Q Consensus 279 ~g~~lpa~~~~~---g~~F~l~sp~a~~V~l~l~~ 310 (900)
....++|..... |++|+||||+|..|.|..-.
T Consensus 22 ~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdf 56 (628)
T COG0296 22 LYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDF 56 (628)
T ss_pred hHhhhCcccccCCCCceEEEEECCCCCeEEEEeec
Confidence 334556655544 59999999999999999854
No 157
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=77.16 E-value=2.8 Score=38.73 Aligned_cols=65 Identities=18% Similarity=0.461 Sum_probs=41.8
Q ss_pred eEEEEEeecC---CCCCCC-cccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccccCCCC-CCccHHHHHHh
Q 002609 144 RYCALVGDFN---GWSPTE-NCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDDYDKGD-SGVSIQEIFKR 218 (900)
Q Consensus 144 ~~~~l~Gdfn---~W~~~~-~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 218 (900)
+.++|+||.. +|++.. -+| ....+..|++.| .|+.|. .. +|+|+.--+.+. ..|
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l-----~~~~~~~W~~~v--~lp~~~---~v---eyKyv~~~~~~~~~~v-------- 74 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKL-----DPTAYPTWSGSI--SLPAST---NV---EWKCLKRNETNPTAGV-------- 74 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccc-----cCCCCCeEEEEE--EcCCCC---eE---EEEEEEEcCCCCcceE--------
Confidence 4789999755 999643 244 356888999988 466665 33 889976332221 123
Q ss_pred ccCCCCCCCcccccc
Q 002609 219 ANDEYWEPGEDRFVK 233 (900)
Q Consensus 219 ~~~~~~~~~~~~~~~ 233 (900)
.||.|+.+.++
T Consensus 75 ----~WE~g~Nr~~~ 85 (97)
T cd05810 75 ----QWQGGGNNQLT 85 (97)
T ss_pred ----EEeeCCCEEEe
Confidence 58887665443
No 158
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=77.12 E-value=46 Score=37.11 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=57.9
Q ss_pred hHHHHcCcceEEEeeeeec-CCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccccccccC
Q 002609 427 PHVKEAGYNVIQLFGVVEH-KDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQF 505 (900)
Q Consensus 427 ~yLk~LGvn~I~LmPv~e~-~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~f 505 (900)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|.+|+++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677899999987644332 122345421 011135678888999999999998833
Q ss_pred CCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 506 DGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 506 dg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
.|....++.. ...-++.+.+++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 2221111111 1224556666777778899999999994
No 159
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=76.39 E-value=8.6 Score=42.92 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC-----------CCCCCHHHHHHHHHHHhhcCcEEEEeec-c
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS-----------SRYGTPDDFKRLVDEAHGLGLLVFLDIV-H 491 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~-----------~~yGt~~elk~LV~~aH~~GI~VILDvV-~ 491 (900)
+.|+.+..+++|.++|==. ...+|.+....|=.+. ..+=|.+|++++|+-|.++||+||-.|- +
T Consensus 20 ~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEiD~P 95 (303)
T cd02742 20 RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEIDMP 95 (303)
T ss_pred HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEeccch
Confidence 4599999999999976321 1112333322221111 1123689999999999999999999984 6
Q ss_pred cccccccccccccCCCCCCccccCCCCCccCCC--CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccC
Q 002609 492 SYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYW--GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHN 569 (900)
Q Consensus 492 NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~w--g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~ 569 (900)
.|+..-..... .... .++- + ..+ ....||..+|++.+++.+.+.-+++-|. +..=|+
T Consensus 96 GH~~a~~~~~p-~l~~--~~~~-----~--~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iHi----- 154 (303)
T cd02742 96 GHSTAFVKSFP-KLLT--ECYA-----G--LKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLHI----- 154 (303)
T ss_pred HHHHHHHHhCH-Hhcc--Cccc-----c--CCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEEe-----
Confidence 77654211000 0000 0010 0 111 2257899999999999999999985431 111122
Q ss_pred CccccCCChhhhhhcccch-h-HHHHHHHHHHHHHhcCCCEEEEEec
Q 002609 570 GFASLTGDLEEYCNQYVDK-D-ALLYLILANEILHALHPNIITIAED 614 (900)
Q Consensus 570 g~~~~~g~~~~~~~~~~d~-~-a~~~l~~~~~~l~~~~P~~ilIaE~ 614 (900)
|. +|+... .+. + -..|++.+.+.+++.+...++=.|.
T Consensus 155 Gg-------DE~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~ 193 (303)
T cd02742 155 GG-------DEAHFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDG 193 (303)
T ss_pred cc-------eecCCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 21 122111 111 1 2457788888888877555554443
No 160
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=76.35 E-value=3.4 Score=37.74 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=30.4
Q ss_pred eEEEEEeec---CCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 144 RYCALVGDF---NGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 144 ~~~~l~Gdf---n~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
+.++|+||- .+|++ +.+|+ - ..+.|++.+ .|+.++ . .+|.|+.
T Consensus 16 q~l~v~G~~~~LG~W~~-~~~l~-----~-~~~~W~~~~--~l~~~~---~---ieyKy~~ 61 (92)
T cd05818 16 EHVAILGSTKELGSWKK-KVPMN-----W-TENGWVCDL--ELDGGE---L---VEYKFVI 61 (92)
T ss_pred CEEEEEeChHHHCCCCC-CCccc-----c-CCCCEEEEE--EeCCCC---c---EEEEEEE
Confidence 478999986 69994 55775 2 346799887 456664 3 3888887
No 161
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=74.03 E-value=6.8 Score=44.55 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=57.2
Q ss_pred HHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 473 RLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 473 ~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
..|++||++|++|+-=+.+...... . ..+ ..| -.+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~--~-----------~~~------------~lL-~~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV--E-----------WLE------------DFL-KKDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch--H-----------HHH------------HHh-ccCcccchHHHHHHHHHHHHhC
Confidence 6789999999999986543322000 0 000 001 0113344556666666777899
Q ss_pred ccEEEecCcccchhccCCccccCCChhhhhhcccchh-HHHHHHHHHHHHHhcCCCEEEE
Q 002609 553 IDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKD-ALLYLILANEILHALHPNIITI 611 (900)
Q Consensus 553 VDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~-a~~~l~~~~~~l~~~~P~~ilI 611 (900)
+||+=+|.-... + + ..+.+ -..|++.+.+.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~-~-~----------------~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETEL-G-D----------------AEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccC-C-c----------------HHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999954321 0 0 00122 3468899999999988887666
No 162
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=73.81 E-value=3.6 Score=38.34 Aligned_cols=45 Identities=16% Similarity=0.544 Sum_probs=33.0
Q ss_pred eEEEEEee---cCCCCCCCc----ccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 144 RYCALVGD---FNGWSPTEN----CAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 144 ~~~~l~Gd---fn~W~~~~~----~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
+.++|+|+ +.+|+.... +|. ...+..|++.| .|..|+ . .+|.|+.
T Consensus 19 e~l~vvGs~~~LG~W~~~~~~a~~~l~-----~~~~~~W~~~~--~lp~~~---~---veyK~v~ 70 (103)
T cd05820 19 EFLYLTGSVPELGNWSTSTDQAVGPLL-----CPNWPDWFVVA--SVPAGT---Y---IEFKFLK 70 (103)
T ss_pred CEEEEEECcHHhCCCChhccccccccc-----cCCCCCEEEEE--EcCCCC---c---EEEEEEE
Confidence 47899997 559997531 553 57888999988 467776 3 4889987
No 163
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.64 E-value=31 Score=39.48 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeec-ccccccccccccccCCCCCCcc-ccCCCCCccCCCCCccccCCCHHHHHHHHHHH
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIV-HSYSAADQMVGLSQFDGSNDCY-FHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNL 544 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV-~NH~~~~~~~~l~~fdg~~~~y-f~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l 544 (900)
|.+|+|++|+-|.++||+||-.|- +.|+..--... ..+....... +.. .....+..||..+|++.+++.+.+
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~-pel~~~~~~~~~~~-----~~~~~~~~L~~~~~~t~~f~~~ll 157 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAY-PELGCTGGPGSVVS-----VQGVVSNVLCPGKPETYTFLEDVL 157 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhC-ccccCCCCCCcccc-----ccCcCCCccCCCChhHHHHHHHHH
Confidence 699999999999999999999884 66665321000 0111000000 000 011123678999999999999999
Q ss_pred HHHHHhc
Q 002609 545 NWWVVEY 551 (900)
Q Consensus 545 ~~Wl~ey 551 (900)
.-.++-|
T Consensus 158 ~E~~~lF 164 (357)
T cd06563 158 DEVAELF 164 (357)
T ss_pred HHHHHhC
Confidence 9888544
No 164
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=70.48 E-value=8.1 Score=41.60 Aligned_cols=46 Identities=17% Similarity=0.446 Sum_probs=36.0
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
+-|.++|+||+++|+++- |. ..+ +.++..++|+.+|++|++|+-.|
T Consensus 75 ~Yl~~~k~lGf~~IEiS~----------G~-----~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 75 EYLNECDELGFEAVEISD----------GS-----MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHcCCCEEEEcC----------Cc-----cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 346699999999999864 11 111 36899999999999999999765
No 165
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=69.86 E-value=11 Score=41.93 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHh
Q 002609 471 FKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVE 550 (900)
Q Consensus 471 lk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~e 550 (900)
..++++.||++|++|++=|- +... + .|+. ..|+ --.+++..|+-+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~~---~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFDS---ELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCCH---HHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997663 1110 0 0110 0011 1234688899899999999999
Q ss_pred cCccEEEecC
Q 002609 551 YQIDGFQFHS 560 (900)
Q Consensus 551 ygVDGFRfD~ 560 (900)
||+||+-+|-
T Consensus 102 ~~~DGidiDw 111 (313)
T cd02874 102 YGYDGVNIDF 111 (313)
T ss_pred hCCCcEEEec
Confidence 9999999994
No 166
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=68.49 E-value=5.3 Score=45.02 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=34.0
Q ss_pred hhhhHHHHcCcceEEEeeeee-cCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 424 KVLPHVKEAGYNVIQLFGVVE-HKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e-~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
.+|..+|++|+|+|..-=... |.... ..-|| ....+|.++++.|+++||.|||-.=
T Consensus 28 ~~l~k~ka~G~n~v~~yv~W~~he~~~----g~~df-------~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 28 DRLQKMKAAGLNTVSTYVPWNLHEPEE----GQFDF-------TGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp HHHHHHHHTT-SEEEEE--HHHHSSBT----TB----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHhCCcceEEEeccccccCCCC----Ccccc-------cchhhHHHHHHHHHHcCcEEEeccc
Confidence 458889999999997531111 11100 01222 2357999999999999999999864
No 167
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=67.85 E-value=5.7 Score=48.64 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=55.1
Q ss_pred HHHHHHhCCCceeeeccccccCCCCCCCCCCCCCCccccccc----------cccccccccCchHHHHHHHHHHHHHhCc
Q 002609 722 RLITFTIGGHAYLNFMGNEFGHPKRVEFPMPSNNFSFSLANR----------HWDLLANRLHSNLYSFDQELMKLDENAK 791 (900)
Q Consensus 722 ~li~ltl~G~~Pliy~G~EfG~~~~~d~p~~~nn~s~~~~~~----------~W~~~~~~~~~~l~~f~r~Li~LRk~~p 791 (900)
.++-+|.+| +|=+|+|.|.=..--. +|.|..+.....+ +|++...-...-=.....+++++|++++
T Consensus 712 ~LlkltaPG-VPD~YQGtE~wd~SLV---DPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~ 787 (889)
T COG3280 712 TLLKLTAPG-VPDIYQGTELWDFSLV---DPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP 787 (889)
T ss_pred HHHHHcCCC-CCccccchhhhhcccc---CCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch
Confidence 356677778 6999999997544322 3455544322111 2212110000001235688999999999
Q ss_pred ccccCCceEEee--c-CCCeEEEEEcC----cEEEEEeC
Q 002609 792 VLLRGSPSVHHV--N-DAKMVICYMRG----PLVFIFNF 823 (900)
Q Consensus 792 aL~~g~~~i~~~--~-~~~~Vlaf~R~----~llvV~Nf 823 (900)
.+..+..+.... . ..+.|+||.|+ .+++|++-
T Consensus 788 elF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 788 ELFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred HhhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 976554343322 1 24689999994 35555553
No 168
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=67.06 E-value=7.9 Score=43.67 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=68.1
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCccc------CC----CCCCHHHHHHHHHHHhhcCcEEEEeec-cc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAV------SS----RYGTPDDFKRLVDEAHGLGLLVFLDIV-HS 492 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~------~~----~yGt~~elk~LV~~aH~~GI~VILDvV-~N 492 (900)
++|+.+..+++|.++|=---. .+|.+....|=.. .+ .+=|.+|+++||+-|+.+||+||-.|- +.
T Consensus 22 ~~id~ma~~k~N~lhlhl~D~----~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid~PG 97 (351)
T PF00728_consen 22 RLIDQMAYYKLNVLHLHLSDD----QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEIDTPG 97 (351)
T ss_dssp HHHHHHHHTT-SEEEEEEESS----TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEEESS
T ss_pred HHHHHHHHcCCcEEEEEEecC----CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeeccCch
Confidence 469999999999998733211 1233222222111 11 134689999999999999999999884 67
Q ss_pred ccccccccccccCCCCCCccccCCCCC-ccCCCC--CccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 493 YSAADQMVGLSQFDGSNDCYFHTGKRG-FHKYWG--TRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 493 H~~~~~~~~l~~fdg~~~~yf~~~~~g-~~~~wg--~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
|+..-..... .+... . +..+... ....+. +..||..+|++.+++.+.+.-.++-+.
T Consensus 98 H~~~~l~~~p-~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 98 HAEAWLKAYP-ELGCS--A-WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp S-HHHHHHHH-HHCCC--H-TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCc-hhhcc--c-cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 7764211000 00000 0 0000000 011121 247899999999999999999987666
No 169
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=66.75 E-value=8 Score=48.16 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=47.7
Q ss_pred CCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCC----CCCCCccCCCcccCCCCCCHHHHH
Q 002609 413 PKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY----FTVGYRVTNLYAVSSRYGTPDDFK 472 (900)
Q Consensus 413 ~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~----~~wGY~~~~yfa~~~~yGt~~elk 472 (900)
-++|+|..+ .+.++.+++.|.+.|||+||...... .+-.|.+.+=||.+|-|=+++.|-
T Consensus 77 ~GIGDfgdL-~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDL-EALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHH-HHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 478999994 45699999999999999999886422 235799999999999888876664
No 170
>TIGR03356 BGL beta-galactosidase.
Probab=65.04 E-value=30 Score=40.59 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=60.8
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCC------CCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSR------YGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~------yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
..|.-..+. |..||+||+|++-+.=-. -.+.|. -...+-.+++|++|.++||++|+++
T Consensus 51 d~y~~y~eD-i~l~~~~G~~~~R~si~W---------------sri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 51 DHYHRYEED-VALMKELGVDAYRFSIAW---------------PRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred cHHHhHHHH-HHHHHHcCCCeEEcccch---------------hhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 356666777 999999999998653211 111111 1125778899999999999999999
Q ss_pred cccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 490 VHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 490 V~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
.| .. .+ .++... . -+.++++.+.+.+-++.-+++|+
T Consensus 115 ~H--fd--~P-----------~~l~~~-----g-------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 115 YH--WD--LP-----------QALEDR-----G-------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cc--CC--cc-----------HHHHhc-----C-------CCCChHHHHHHHHHHHHHHHHhC
Confidence 74 11 10 111110 0 23457777888888887777776
No 171
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=64.01 E-value=26 Score=38.16 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHH
Q 002609 465 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNL 544 (900)
Q Consensus 465 yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l 544 (900)
.+...++.+=|.+|++.|++|+|=| .. + .... |. .. -++++-|+-+++++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~KVllSi-------GG-~-------~~~~-fs-------------~~-a~~~~~r~~f~~s~ 104 (256)
T cd06546 55 HPRFTTLWTELAILQSSGVKVMGML-------GG-A-------APGS-FS-------------RL-DDDDEDFERYYGQL 104 (256)
T ss_pred cchhhHHHHHHHHHHhCCCEEEEEE-------CC-C-------CCCC-cc-------------cc-cCCHHHHHHHHHHH
Confidence 3344566666778899999999854 00 0 0000 11 01 13455566667788
Q ss_pred HHHHHhcCccEEEecC
Q 002609 545 NWWVVEYQIDGFQFHS 560 (900)
Q Consensus 545 ~~Wl~eygVDGFRfD~ 560 (900)
.-++++|++||+-||-
T Consensus 105 ~~~~~~~~~DGiDiDw 120 (256)
T cd06546 105 RDMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHHhCCCceEEee
Confidence 8888999999999993
No 172
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=63.27 E-value=14 Score=39.94 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=35.3
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
++.|.++|+||+++|+++- |. ..+ +.++..++|+.+.++|++|+-.|=
T Consensus 87 ~~yl~~~k~lGf~~IEiSd----------Gt-----i~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISD----------GT-----IDL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE------------SS-----S--------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecC----------Cc-----eeC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 4568999999999999853 11 111 368899999999999999998883
No 173
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=63.18 E-value=13 Score=41.17 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=36.0
Q ss_pred hhhHHHHcCcceEEEeeeeecCCC---CCCCCcc--------CCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDY---FTVGYRV--------TNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~---~~wGY~~--------~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
-|+.+|+.|+|+||++-+.+.... +.-|+.+ .||-.+++.| -+-+.++|+.|.++||.+- +|+-|
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~--lv~~w 110 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA--LVPFW 110 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE--EESS-
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE--EEEEE
Confidence 499999999999999877664321 1122222 2333333332 4678999999999999995 55444
No 174
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=63.10 E-value=19 Score=45.20 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=46.7
Q ss_pred cCCCCC-ccccCCC-----HHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHH
Q 002609 521 HKYWGT-RMFKYDD-----LDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYL 594 (900)
Q Consensus 521 ~~~wg~-~~ln~~~-----~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l 594 (900)
.--||. ..|+|++ |...++|..-...=. -=+||+|+|..++- ++...
T Consensus 492 lI~WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsT-------------------------PlHVa 544 (1521)
T KOG3625|consen 492 LICWGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHST-------------------------PLHVA 544 (1521)
T ss_pred eeeecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCC-------------------------chhHH
Confidence 345754 7888875 445555554333222 24799999987653 23333
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCCC
Q 002609 595 ILANEILHALHPNIITIAEDATYYP 619 (900)
Q Consensus 595 ~~~~~~l~~~~P~~ilIaE~~~~~p 619 (900)
+.+-++.++++|+.+++||-.++..
T Consensus 545 EylLd~ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 545 EYLLDAARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred HHHHHHHHhcCCCeEEEeeeccCCc
Confidence 4445667889999999999877543
No 175
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=62.86 E-value=49 Score=34.08 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhhc--CcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHH
Q 002609 467 TPDDFKRLVDEAHGL--GLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNL 544 (900)
Q Consensus 467 t~~elk~LV~~aH~~--GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l 544 (900)
..+.....+.++|++ |++|++=|--. .....+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~---------------~~~~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGW---------------TDSSPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCC---------------CCCCCc---------------hhhcCHHHHHHHHHHH
Confidence 345667777888887 99999876200 000000 1234677888889999
Q ss_pred HHHHHhcCccEEEecC
Q 002609 545 NWWVVEYQIDGFQFHS 560 (900)
Q Consensus 545 ~~Wl~eygVDGFRfD~ 560 (900)
.-+++++++||+-+|-
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999994
No 176
>PLN02950 4-alpha-glucanotransferase
Probab=62.10 E-value=16 Score=46.97 Aligned_cols=88 Identities=14% Similarity=0.297 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCcEEEEeeccc--ccccccccccccC-----CCCCCccccCCCCCccCCCCCccccCCCHH--HHHH
Q 002609 469 DDFKRLVDEAHGLGLLVFLDIVHS--YSAADQMVGLSQF-----DGSNDCYFHTGKRGFHKYWGTRMFKYDDLD--VLHF 539 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~VILDvV~N--H~~~~~~~~l~~f-----dg~~~~yf~~~~~g~~~~wg~~~ln~~~~~--vr~~ 539 (900)
.+++++.+.|+++||.++.|+-+. +-|.+.......| .|.++.+|... -..||.+.+|+..-. --+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~----GQ~WG~P~ynw~~l~~~gy~w 536 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKN----GQNWGFPTYNWEEMSKDNYAW 536 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc----cccCCCCCcCHHHHHhcCcHH
Confidence 578899999999999999999864 3333221111222 35566666432 257998877664311 1134
Q ss_pred HHHHHHHHHHhcCccEEEecCcc
Q 002609 540 LLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 540 lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
+++-+++-++ .+|++|+|-+-
T Consensus 537 w~~Rlr~~~~--~~d~lRIDH~~ 557 (909)
T PLN02950 537 WRARLTQMAK--YFTAYRIDHIL 557 (909)
T ss_pred HHHHHHHHHH--hCCEEEEecch
Confidence 4555555443 68999999653
No 177
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=62.09 E-value=19 Score=33.00 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=36.6
Q ss_pred CeEEEEEcCc----EEEEEeCCCCCcccceEEecc-----CCCeEEEEecCCCcccCCcccccccccceeeeeccccCcc
Q 002609 807 KMVICYMRGP----LVFIFNFHPTDSYEDYSVGVE-----EAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLR 877 (900)
Q Consensus 807 ~~Vlaf~R~~----llvV~Nf~~~~s~~~~~i~lp-----~~G~w~~vl~sd~~~~gG~g~~~~~~~~~~~~~~~~~~~~ 877 (900)
+..+||.|+. +++|++.....+...|.+.++ .+-++.+||+.....- +..
T Consensus 6 ~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv---------------------~~~ 64 (91)
T PF09260_consen 6 DSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV---------------------DSN 64 (91)
T ss_dssp TTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE-----------------------TT
T ss_pred CcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE---------------------CCC
Confidence 4689999987 988886555422456777776 2234555554332111 122
Q ss_pred eeEEEEEcCcEEEEEEEcccc
Q 002609 878 NCIEVPLPSRTAQVYKLSRIL 898 (900)
Q Consensus 878 ~~~~l~LP~rsa~Vl~~~~~~ 898 (900)
+.+.|++-..-=.||.+...|
T Consensus 65 G~l~v~m~~G~P~Vl~P~~~l 85 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPASLL 85 (91)
T ss_dssp S-EEEEESTT--EEEEECHHH
T ss_pred CEEEEEEcCCceEEEEEHHHc
Confidence 356677776666777765543
No 178
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=61.56 E-value=63 Score=35.64 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=87.2
Q ss_pred hhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccccccc-ccccc
Q 002609 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQM-VGLSQ 504 (900)
Q Consensus 426 L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~-~~l~~ 504 (900)
+.-|.+-+++.|-+=|- +..+..+=.+++|||.+. +.|..||.=+-+.-+.+-.. |-...
T Consensus 36 ~~~i~~~~f~llVVDps---------------~~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd~~w 96 (300)
T COG2342 36 INEILNSPFDLLVVDPS---------------YCGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWDKYW 96 (300)
T ss_pred HHHHhcCCCcEEEEecc---------------ccCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhhhhh
Confidence 66666677777655441 122333335689998774 45666665554433322110 00000
Q ss_pred CCCCCCccccCCCCCccCCC-CCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhh
Q 002609 505 FDGSNDCYFHTGKRGFHKYW-GTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCN 583 (900)
Q Consensus 505 fdg~~~~yf~~~~~g~~~~w-g~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~ 583 (900)
..+.+. +.- ...+.| |+....|=.|+-++.+.+-+.-.+ +.|+||.-+|.+..--|.-. ....-.
T Consensus 97 ~~~~p~-wLg----~edP~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y~Y~~~--------~~~~~~ 162 (300)
T COG2342 97 LTGRPD-WLG----EEDPEWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAYWYVEW--------NDRETG 162 (300)
T ss_pred hcCCcc-ccc----CCCCCCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechHHHHHH--------hccccc
Confidence 011110 000 122456 667778889999999999888877 89999999998764321100 000000
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCEEEEE
Q 002609 584 QYVDKDALLYLILANEILHALHPNIITIA 612 (900)
Q Consensus 584 ~~~d~~a~~~l~~~~~~l~~~~P~~ilIa 612 (900)
.+.....+.|+..+.+.+++.+|.+.+|-
T Consensus 163 ~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 163 VNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 11123446788889999999999977763
No 179
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=60.89 E-value=17 Score=45.16 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcEEEEeecCCC---CCCceeeeeee-cCccEEEEEeCCCCCCC-------EEEEEEECCCCCeeecC
Q 002609 290 NGKDYDVFNVASDPRWQEKFRSKE---PPIPYWLETRK-GRKAWLKKYTPGIPHGS-------KYRVYFNTPDGPLERIP 358 (900)
Q Consensus 290 ~g~~F~l~sp~a~~V~l~l~~~~~---~~~~~~~~~~~-~~~vW~~~~v~~~~~g~-------~Y~y~v~~~~g~~~~~d 358 (900)
.|..|++|+|.|+.+++.+|+..+ +....++.|.+ ..|.| ...+.+..... .|.|.+....-..+.+|
T Consensus 67 ~G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpy-a~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 145 (697)
T COG1523 67 LGAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPY-AKALDGDLKWGTPALFGYYYGYQITNLSPDRDSAD 145 (697)
T ss_pred cccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccce-eEEeccccccCccccccccccccccccCccccccc
Confidence 356999999999999999998654 34556788877 57889 88887755333 33444432211245678
Q ss_pred CcccccccCC
Q 002609 359 AWATYVQPDA 368 (900)
Q Consensus 359 pya~~~~~~~ 368 (900)
+++|+++.++
T Consensus 146 ~~~Ksvv~~~ 155 (697)
T COG1523 146 PYPKSVVIDP 155 (697)
T ss_pred cCCceEEecc
Confidence 8888877654
No 180
>PTZ00445 p36-lilke protein; Provisional
Probab=59.27 E-value=19 Score=38.13 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=43.4
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCC----CCCCCCccCCCcccCCCCCC--HHHHHHHHHHHhhcCcEEEE
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKD----YFTVGYRVTNLYAVSSRYGT--PDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~----~~~wGY~~~~yfa~~~~yGt--~~elk~LV~~aH~~GI~VIL 487 (900)
+..+.++.....|+++||.+|-+ ++.. .-+-||.-.+ +-+..+++ ..+|+.++.++.++||.|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~----D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIAS----DFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEe----cchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 55666777889999999999942 2221 0123444333 33344443 45699999999999999975
No 181
>PLN03059 beta-galactosidase; Provisional
Probab=58.12 E-value=15 Score=46.18 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=38.5
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
.|..+|++|+|+|+.= --|.++-.. .-.-.|.+..||.++|+.|++.||.|||=.
T Consensus 64 ~L~k~Ka~GlNtV~tY--------V~Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 64 LIQKAKDGGLDVIQTY--------VFWNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHcCCCeEEEE--------ecccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 4788999999999742 123333111 011124568899999999999999999975
No 182
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=57.77 E-value=11 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=31.4
Q ss_pred eEEEEEee---cCCCCCC-CcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 144 RYCALVGD---FNGWSPT-ENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 144 ~~~~l~Gd---fn~W~~~-~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
+.++|+|+ +.+|+.. +-+|+.. ...+...|++.| .+..+. . .+|+|++-
T Consensus 14 e~l~v~G~~~~LG~W~~~~a~~m~~~--~~~~~~~W~~~v--~~~~~~---~---veYky~v~ 66 (101)
T cd05815 14 QSLLICGSDPLLGSWNVKKGLLLKPS--HQGDVLVWSGSI--SVPPGF---S---SEYNYYVV 66 (101)
T ss_pred CEEEEEcChHHcCCcChHhcEeeeec--CCCCCCEEEEEE--EeCCCC---c---EEEEEEEE
Confidence 57899996 5789976 4466421 123445898887 344432 2 59999983
No 183
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=56.61 E-value=22 Score=41.50 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=43.8
Q ss_pred cCCCC-CccccCC-----CHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHH
Q 002609 521 HKYWG-TRMFKYD-----DLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYL 594 (900)
Q Consensus 521 ~~~wg-~~~ln~~-----~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l 594 (900)
.--|| |..|.|+ +|...++|.+..+--++ -++|||+|..++- ++...
T Consensus 357 vIvWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST-------------------------PlhVa 409 (423)
T PF14701_consen 357 VIVWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST-------------------------PLHVA 409 (423)
T ss_pred EEecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC-------------------------cHHHH
Confidence 34565 6788886 58899999988887665 7899999988763 34444
Q ss_pred HHHHHHHHhcCCC
Q 002609 595 ILANEILHALHPN 607 (900)
Q Consensus 595 ~~~~~~l~~~~P~ 607 (900)
+.+-+..++++|+
T Consensus 410 eylLd~AR~v~Pn 422 (423)
T PF14701_consen 410 EYLLDAARKVNPN 422 (423)
T ss_pred HHHHHHHHhhCCC
Confidence 5555667778886
No 184
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=56.17 E-value=22 Score=44.38 Aligned_cols=85 Identities=14% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCcEEEEeecccccccccc-cc-cccC-----CCCCCccccCCCCCccCCCCCccccCCCHHHHHHHH
Q 002609 469 DDFKRLVDEAHGLGLLVFLDIVHSYSAADQM-VG-LSQF-----DGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLL 541 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~~-~~-l~~f-----dg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~ll 541 (900)
.+++++-+.|+++||.++-|+-+.=...+.. |. ...| .|.++.+|... -..||.+.+|+.. +-.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~----GQnWG~P~YnW~~-----l~~ 344 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN----GQNWGFPTYDWEE-----MAE 344 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc----cCcCCCCCcCHHH-----HHh
Confidence 6788999999999999999998653322211 11 1122 35566666432 2579988776532 112
Q ss_pred HHHHHHHHhc-----CccEEEecCcc
Q 002609 542 SNLNWWVVEY-----QIDGFQFHSLS 562 (900)
Q Consensus 542 d~l~~Wl~ey-----gVDGFRfD~~~ 562 (900)
+...+|.+.+ .+|++|+|-+-
T Consensus 345 dgY~WWr~Rlr~~~~~~dalRIDH~~ 370 (745)
T PLN03236 345 DDYAWWRARMQHLEQFFSAIRIDHIL 370 (745)
T ss_pred cCcHHHHHHHHHHHHhCCeEEeechh
Confidence 3344444333 47999999653
No 185
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=55.66 E-value=18 Score=42.16 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=39.4
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcc-cCCCCC---CHHHHHHHHHHHhhcCcEEEEeec
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYA-VSSRYG---TPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa-~~~~yG---t~~elk~LV~~aH~~GI~VILDvV 490 (900)
++..+.++|+.|+|+|-| | +||....... .+|.+= ...=|.+.|+.|-+.||.|+||+.
T Consensus 75 ~~~~~~~ik~~G~n~VRi-P---------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRI-P---------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEc-c---------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 455699999999999986 2 3333321111 334332 223566779999999999999984
No 186
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=52.85 E-value=21 Score=44.46 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CCCCCChhhHHHhhhhHHHHcCcceEEEeeeeec---CCCCCCCCccCCCcccCCCCCCHHHHHHHHH
Q 002609 412 KPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEH---KDYFTVGYRVTNLYAVSSRYGTPDDFKRLVD 476 (900)
Q Consensus 412 ~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~---~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~ 476 (900)
.-++|+|..+. +.++.+++.|.+.|+|.|+..- ....+..|.+.+=|+.+|-|-+++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 34789999955 5699999999999999999953 1234567999999999999988877766543
No 187
>PRK15452 putative protease; Provisional
Probab=52.61 E-value=1.1e+02 Score=36.23 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=32.0
Q ss_pred hhHHHHcCcceEEEee-eeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEe
Q 002609 426 LPHVKEAGYNVIQLFG-VVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLD 488 (900)
Q Consensus 426 L~yLk~LGvn~I~LmP-v~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILD 488 (900)
|...-+.|.++|+|-. -+... -...+ | +.+||++.|+.||++|++|.+=
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R------~~~~~-------f-~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLR------VRNNE-------F-NHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred HHHHHHCCCCEEEECCCccchh------hhccC-------C-CHHHHHHHHHHHHHcCCEEEEE
Confidence 3344477999998732 11110 00122 2 4689999999999999999773
No 188
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.48 E-value=34 Score=40.43 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeec-cccccccccc---ccccC--CCCC---Ccc-ccCCC--CCcc--CCCCCccccCC
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIV-HSYSAADQMV---GLSQF--DGSN---DCY-FHTGK--RGFH--KYWGTRMFKYD 532 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV-~NH~~~~~~~---~l~~f--dg~~---~~y-f~~~~--~g~~--~~wg~~~ln~~ 532 (900)
|.+|+|++|+-|+++||+||-.|- +.|+..--.. ....+ .|.. ..| +.... ..+. ..|.+..||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 799999999999999999999884 6776632100 00000 1110 011 11110 0111 12344678999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 002609 533 DLDVLHFLLSNLNWWVV 549 (900)
Q Consensus 533 ~~~vr~~lld~l~~Wl~ 549 (900)
++++.+||.+.+.-.++
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999998884
No 189
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=50.03 E-value=15 Score=34.01 Aligned_cols=48 Identities=17% Similarity=0.470 Sum_probs=31.9
Q ss_pred eEEEEEee---cCCCCCCCc--ccccCCccCCCCceEEEEEcccccCCCCCcchhhhhccccc
Q 002609 144 RYCALVGD---FNGWSPTEN--CAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVD 201 (900)
Q Consensus 144 ~~~~l~Gd---fn~W~~~~~--~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (900)
+.++|+|+ +.+|+...- +|- +.....++.|++.| .|++|+ . .+|.|+.
T Consensus 18 q~l~v~Gs~~~LG~W~~~~a~~~~~--~~~~~~~~~W~~~~--~lp~~~---~---~eyK~~~ 70 (101)
T cd05807 18 ENVYLVGNVHELGNWDPSKAIGPFF--NQVVYQYPNWYYDV--SVPAGT---T---IEFKFIK 70 (101)
T ss_pred CEEEEEECHHHHCCCChHHcccccc--ccCCCcCCcEEEEE--EcCCCC---c---EEEEEEE
Confidence 58999997 559996532 221 00125778999988 477776 3 3888887
No 190
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=49.97 E-value=1e+02 Score=34.98 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccc
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAAD 497 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~ 497 (900)
.+.||+|++++|+.|-++++-+. |++..
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~--H~G~~ 106 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLW--HAGRQ 106 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE----GGG
T ss_pred HHHHHHHHHHHHhcCccceeecc--ccccc
Confidence 78999999999999999999986 55543
No 191
>PRK01060 endonuclease IV; Provisional
Probab=49.49 E-value=37 Score=36.94 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=36.7
Q ss_pred hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEE
Q 002609 419 NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~V 485 (900)
.++.+ .|..++++|+++|||.+--.+ . +. +..-++++++++-+.+.+.||++
T Consensus 12 ~~~~~-~l~~~~~~G~d~vEl~~~~p~-----------~-~~--~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEG-AVAEAAEIGANAFMIFTGNPQ-----------Q-WK--RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHH-HHHHHHHcCCCEEEEECCCCC-----------C-Cc--CCCCCHHHHHHHHHHHHHcCCCC
Confidence 34444 499999999999999652111 1 11 21237888999999999999985
No 192
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=48.50 E-value=38 Score=38.12 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcC
Q 002609 473 RLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQ 552 (900)
Q Consensus 473 ~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eyg 552 (900)
..|++||++|.+|+==+.+.+-.... +-...+.+ +.++ .-.+.+.|++.+ +.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~-~~~~ll~~--------~~~g-------------~~~~A~kLi~ia----~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE-WCEELLEK--------DEDG-------------SFPYADKLIEIA----KYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH-HHHHHT-----------TTS---------------HHHHHHHHHH----HHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH-HHHHHHcC--------Cccc-------------ccHHHHHHHHHH----HHcC
Confidence 57899999999998766652211100 00001111 1111 112344455544 4579
Q ss_pred ccEEEecCcccchhccCCccccCCChhhhhhcccchhHHHHHHHHHHHHHhcCCCEEEEE
Q 002609 553 IDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKDALLYLILANEILHALHPNIITIA 612 (900)
Q Consensus 553 VDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~a~~~l~~~~~~l~~~~P~~ilIa 612 (900)
+||+=+---..+.. ......-+.|++.+++.+++ .|+..++=
T Consensus 100 FDGw~iN~E~~~~~-----------------~~~~~~l~~F~~~l~~~~~~-~~~~~v~W 141 (311)
T PF03644_consen 100 FDGWLINIETPLSG-----------------PEDAENLIDFLKYLRKEAHE-NPGSEVIW 141 (311)
T ss_dssp --EEEEEEEESSTT-----------------GGGHHHHHHHHHHHHHHHHH-T-T-EEEE
T ss_pred CCceEEEecccCCc-----------------hhHHHHHHHHHHHHHHHhhc-CCCcEEEE
Confidence 99987764332210 00112346799999999999 88876663
No 193
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=48.47 E-value=75 Score=28.05 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCcEEEEe-ecCCCCCCceeeeeeecCccEEEEEeCCCCCC-CEEEEEEECCCCCeeecCCccc
Q 002609 292 KDYDVFNVASDPRWQEK-FRSKEPPIPYWLETRKGRKAWLKKYTPGIPHG-SKYRVYFNTPDGPLERIPAWAT 362 (900)
Q Consensus 292 ~~F~l~sp~a~~V~l~l-~~~~~~~~~~~~~~~~~~~vW~~~~v~~~~~g-~~Y~y~v~~~~g~~~~~dpya~ 362 (900)
+.|+..+ .|++|.|.= |+.-.. ..+|.+.++.| .+.++ ++.| ..|+|.| ||. ...||-..
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~----~~pm~~~~~~~-~~~~~-L~~g~y~YkF~V---dg~-w~~d~~~~ 65 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK----KIPLEKSGKGF-SATLR-LPPGKYQYKFIV---DGE-WRHSPDLP 65 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc----cccceECCCCc-EEEEE-cCCCCEEEEEEE---CCE-EEeCCCCC
Confidence 5788777 788888872 222111 36787765557 77674 7777 4789988 564 34566433
No 194
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=46.68 E-value=31 Score=42.06 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=42.2
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+..|...|++|.|+||--= +-.-.+. .+.. -.|...-||.++|+.||+.|+-|||=+=+-=++
T Consensus 52 ~~~i~k~k~~Gln~IqtYV-fWn~Hep----~~g~-----y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIca 114 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYV-FWNLHEP----SPGK-----YDFSGRYDLVKFIKLIHKAGLYVILRIGPYICA 114 (649)
T ss_pred HHHHHHHHhcCCceeeeee-ecccccC----CCCc-----ccccchhHHHHHHHHHHHCCeEEEecCCCeEEe
Confidence 3458889999999998532 1111110 1111 135678899999999999999999988543333
No 195
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=46.57 E-value=26 Score=33.39 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
.+..+++.+.++|+.+||+.|= .+-.++++.|+++||+|+-
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 3445689999999999999882 4556888999999999974
No 196
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=43.72 E-value=2.4e+02 Score=31.30 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=38.1
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCC---CCc-cCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTV---GYR-VTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~w---GY~-~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
++....+- +|+-+++|+..|.+ +..| +.. ..|+..+.+. .++++||+=|+++|+.|+|=+.
T Consensus 30 ~t~~~k~y-IDfAa~~G~eYvlv--------D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQKRY-IDFAAEMGIEYVLV--------DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHHHH-HHHHHHTT-SEEEE--------BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHH-HHHHHHcCCCEEEe--------ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEe
Confidence 56665554 99999999999987 1123 222 3444444433 7899999999999999999764
No 197
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=42.08 E-value=3.8e+02 Score=29.72 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHcCcceEEEeeeeecCCCCCCCCccCCCcccC--CCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 428 HVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVS--SRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 428 yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~--~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
|..+-.|+.|-|.=+..++. -|+-..||-... +.++.-.+|.+-|++|+++|++|+|=|
T Consensus 19 ~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 19 YCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred HhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEc
Confidence 44445688887766666553 223233431111 111245689999999999999999965
No 198
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=38.83 E-value=39 Score=38.79 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=45.7
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAA 496 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~ 496 (900)
.++.|..|+++|+|.|.|- |..+... - ...-.+-.+.++..+.++.+++.||. |-+|++++.-+.
T Consensus 107 ~~e~l~~l~~~G~~rvslG-vQS~~~~--------~-L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLG-MQSAAPH--------V-LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEe-cccCCHH--------H-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 3345999999999999753 3333211 0 11223445789999999999999999 999999775443
No 199
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=38.26 E-value=45 Score=41.26 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=27.6
Q ss_pred CCCCCeEEeCCc-eEEEEEcCCCCcEEEEeecC
Q 002609 280 PSNLPYDVIDNG-KDYDVFNVASDPRWQEKFRS 311 (900)
Q Consensus 280 g~~lpa~~~~~g-~~F~l~sp~a~~V~l~l~~~ 311 (900)
+.+|+++.+++| +.|..|+|.|.+|.++-+..
T Consensus 102 y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n 134 (757)
T KOG0470|consen 102 YEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFN 134 (757)
T ss_pred ccccceeccCCCceeeeeecccccccccccccC
Confidence 456778888888 99999999999999998764
No 200
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=37.53 E-value=1.5e+02 Score=27.48 Aligned_cols=60 Identities=7% Similarity=-0.048 Sum_probs=35.9
Q ss_pred CceEEEEEcCC--CCcEEEEeecCCCCCCceeeeeee--cCc--cEEEEEeCCCCCCCEEEEEEEC
Q 002609 290 NGKDYDVFNVA--SDPRWQEKFRSKEPPIPYWLETRK--GRK--AWLKKYTPGIPHGSKYRVYFNT 349 (900)
Q Consensus 290 ~g~~F~l~sp~--a~~V~l~l~~~~~~~~~~~~~~~~--~~~--vW~~~~v~~~~~g~~Y~y~v~~ 349 (900)
+-++++|+.+. .++|.|.+.++........++|.+ ..+ -||++.++....-..|.|.|..
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~~ 81 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELVD 81 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEEc
Confidence 56899999876 467777777653111122456654 222 3458888644323667888864
No 201
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=37.36 E-value=33 Score=38.16 Aligned_cols=58 Identities=24% Similarity=0.501 Sum_probs=42.0
Q ss_pred CeEEEEEecCCceEEEEEeecCCCCCCCcccccCCccCCCCceEEEEEcccccCCCCCcchhhhhcccccc
Q 002609 132 HRVDFMDWAPGARYCALVGDFNGWSPTENCAREGHLGHDDYGYWFIILEDKLREGEKPDELYFQQYNYVDD 202 (900)
Q Consensus 132 ~~~~~~ewap~a~~~~l~Gdfn~W~~~~~~~~~~~~~~~~~g~w~~~~p~~~~~~~~~~~~~~~~~~~~~~ 202 (900)
+..+---|.++-+.|+|.|=|.+|.... ++. +..++-|.+...+ .|.+|+ ++|+|.+|
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~-~l~---~~~~~~~~f~~~~--dL~~g~-------~~~kf~vd 136 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKI-PLV---RSGKNVGGFSTIL--DLPPGE-------HEYKFIVD 136 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccc-cce---ecCCCcccceeeE--ecCCce-------EEEEEecC
Confidence 3445667999999999999999998554 332 1234444577776 588888 68888876
No 202
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.90 E-value=58 Score=37.19 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=44.8
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccccc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAA 496 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~ 496 (900)
+.|..|+++|+|.|.|-. ..+.. .-.-++ .+-.+.++..+.|+.|++.||. |-+|+.++.-+.
T Consensus 101 e~l~~l~~~Gv~risiGv-qS~~~--------~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-QSFRD--------DKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHcCCCEEEEec-ccCCh--------HHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 349999999999997532 22211 111223 5667899999999999999996 789998765443
No 203
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.15 E-value=77 Score=34.28 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=33.3
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEE
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVF 486 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VI 486 (900)
+.|+.++++||++|+|.. ..+..| .++ .+..++++|-+++.+.||.|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~-----------~~~~~~-~~~---~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWG-----------GRPHAF-APD---LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEcc-----------CCcccc-ccc---cCchHHHHHHHHHHHcCCeEE
Confidence 349999999999999842 111111 111 134678888889999999974
No 204
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.84 E-value=66 Score=34.89 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=34.0
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
.++.++++|++.|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 21 ~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 21 RLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 4899999999999996421110 0011111 357788999999999998863
No 205
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=33.40 E-value=35 Score=37.98 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeec
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV 490 (900)
+++||+++.+-||++||.|.||--
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 389999999999999999999974
No 206
>PRK15447 putative protease; Provisional
Probab=32.59 E-value=97 Score=34.63 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=38.0
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
|++..|. -.|++.|+++|+|-- +.-+.. .+ | +.+++++.|+.||++|.+|.+=+
T Consensus 15 ~~~~~~~----~~~~~~gaDaVY~g~--~~~~~R------~~-------f-~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 15 ETVRDFY----QRAADSPVDIVYLGE--TVCSKR------RE-------L-KVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred CCHHHHH----HHHHcCCCCEEEECC--ccCCCc------cC-------C-CHHHHHHHHHHHHHcCCEEEEEe
Confidence 5666654 457889999999862 110100 12 2 68999999999999999998833
No 207
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=32.53 E-value=90 Score=35.47 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 532 DDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 532 ~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
.++..|+-+++++.-|+++|++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45778888999999999999999999993
No 208
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=31.22 E-value=1.3e+02 Score=33.78 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 532 DDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 532 ~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
.++..|+.+++++.-|+++|++||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45788999999999999999999999994
No 209
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=31.16 E-value=7.1e+02 Score=28.06 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=40.0
Q ss_pred HHhhhhHHHH---cCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 422 TEKVLPHVKE---AGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 422 ~ek~L~yLk~---LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
++..+.|.++ -|+--|-.-.+.-++....+.+++.-+. . .-.+.||+|++++|+.|-++++-+. |.+.
T Consensus 32 ~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~---d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~ 102 (336)
T cd02932 32 TDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---D--EQIEALKRIVDFIHSQGAKIGIQLA--HAGR 102 (336)
T ss_pred CHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecC---H--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCc
Confidence 3444666554 4666665444444443221222222110 0 1378999999999999999999986 4444
No 210
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=31.00 E-value=1.1e+02 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEec
Q 002609 532 DDLDVLHFLLSNLNWWVVEYQIDGFQFH 559 (900)
Q Consensus 532 ~~~~vr~~lld~l~~Wl~eygVDGFRfD 559 (900)
+++..|+-+++++.-++++||+||+-+|
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 5678899999999999999999999998
No 211
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=30.98 E-value=5.8e+02 Score=28.84 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=60.8
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecC--C-C-CCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHK--D-Y-FTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~--~-~-~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
+...+.+. +..+.++|+++|-|-||-+.. . . ++-.|++.+. -...++. |++.. -.|-||-||-+.
T Consensus 49 s~d~l~~~-~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~--------v~~air~-iK~~~-pdl~vi~Dvclc 117 (320)
T cd04824 49 GVNRLEEF-LRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGP--------VIQAIKL-IREEF-PELLIACDVCLC 117 (320)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeCCCccccCCcCccccccCCCCh--------HHHHHHH-HHHhC-CCcEEEEeeecc
Confidence 45666766 899999999999999996332 1 1 2222333221 0222332 23322 489999999876
Q ss_pred ccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEE
Q 002609 493 YSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGF 556 (900)
Q Consensus 493 H~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGF 556 (900)
.-......|+..-+ | .-.|.++.+.|.....-.. +-|.|-.
T Consensus 118 ~YT~hGHcGil~~~------------------g----~vdND~Tl~~L~k~Avs~A-~AGADiV 158 (320)
T cd04824 118 EYTSHGHCGILYED------------------G----TINNEASVKRLAEVALAYA-KAGAHIV 158 (320)
T ss_pred CCCCCCcceeECCC------------------C----cCcCHHHHHHHHHHHHHHH-HhCCCEE
Confidence 54443323321100 1 1236677777877776666 6777643
No 212
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=30.77 E-value=48 Score=38.36 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred hhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCC---HHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 419 NEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGT---PDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 419 ~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt---~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
..+.+. +..-+++|++.==|+=+ .|+..+|+ +++|..|++=|.+++|.||.|=||.-+.
T Consensus 211 ~alE~A-~~~A~~~~~kVkGvlit-----------------NPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sV 272 (471)
T KOG0256|consen 211 EALEAA-LNQARKLGLKVKGVLIT-----------------NPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSV 272 (471)
T ss_pred HHHHHH-HHHHHHhCCceeEEEEe-----------------CCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccc
Confidence 344443 66667777765322211 22334564 8999999999999999999999987554
Q ss_pred c
Q 002609 496 A 496 (900)
Q Consensus 496 ~ 496 (900)
-
T Consensus 273 F 273 (471)
T KOG0256|consen 273 F 273 (471)
T ss_pred c
Confidence 3
No 213
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=30.09 E-value=80 Score=35.98 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=44.5
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeecccccc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSA 495 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~ 495 (900)
+.|..|+++|||.|. +.|+.+... -.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++.-+
T Consensus 99 e~l~~l~~~GvnRiS-iGvQS~~~~--------~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 99 AWLKGMKNLGVNRIS-FGVQSFNED--------KLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHcCCCEEE-EecccCCHH--------HHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 349999999999997 444444321 11122 4556789999999999999997 66999976543
No 214
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=29.84 E-value=78 Score=37.95 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=44.6
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCc-EEEEeecccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGL-LVFLDIVHSY 493 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI-~VILDvV~NH 493 (900)
+++.|..|+++|++.|.|-| ..+.. .-.-++ .|-.|.++..+.++.|+++|+ .|-+|+.+..
T Consensus 268 t~e~L~~Lk~~Gv~RISIGv-QS~~d--------~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINP-QTMND--------ETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcC-CcCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 34459999999999998655 22111 111123 455689999999999999999 7889998653
No 215
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=29.30 E-value=7.9e+02 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccc
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAAD 497 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~ 497 (900)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 78999999999999999999986 66543
No 216
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.77 E-value=1.3e+02 Score=31.83 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCC----CCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYF----TVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~----~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
++++...|+++|+..|+|+|.+.....- ..-|.-.+.-. =+.++++++.+.+.++|+.|++
T Consensus 147 i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 147 MQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 3445788889999999999977654210 01122222211 2578999999999999999974
No 217
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=27.75 E-value=2.3e+02 Score=31.97 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=60.7
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCC-CCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY-FTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~-~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+...+.+. +..+.++||++|-|-||-++... ++-.|++.+. -...++.+-++. -.|.||-||-+..-.
T Consensus 59 sid~l~~~-~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~--------v~~air~iK~~~--pdl~vi~DVcLc~YT 127 (322)
T PRK13384 59 PESALADE-IERLYALGIRYVMPFGISHHKDAKGSDTWDDNGL--------LARMVRTIKAAV--PEMMVIPDICFCEYT 127 (322)
T ss_pred CHHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccCCCCh--------HHHHHHHHHHHC--CCeEEEeeeecccCC
Confidence 44566665 89999999999999999554321 2222222211 123333332222 379999999876544
Q ss_pred cccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEE
Q 002609 496 ADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGF 556 (900)
Q Consensus 496 ~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGF 556 (900)
.....|+- .. | .-.|.++.+.|.....-.. +-|.|-.
T Consensus 128 ~hGHcGil------------------~~-g----~i~ND~Tl~~L~~~Als~A-~AGADiV 164 (322)
T PRK13384 128 DHGHCGVL------------------HN-D----EVDNDATVENLVKQSVTAA-KAGADML 164 (322)
T ss_pred CCCceeec------------------cC-C----cCccHHHHHHHHHHHHHHH-HcCCCeE
Confidence 43323321 00 1 1346677888887777666 6777643
No 218
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=27.66 E-value=79 Score=37.12 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=43.3
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEE-Eeeccccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVF-LDIVHSYSAA 496 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VI-LDvV~NH~~~ 496 (900)
+++.|..|+++|+|.|.|- |..+... ..-.+ .|--+.++..+.|+.|++.||.+| +|+.++.-+.
T Consensus 140 t~e~l~~l~~~G~~rvslG-vQS~~~~--------~L~~l-~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIG-VQSFHDS--------ELHAL-HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred CHHHHHHHHHcCCCEEEEe-cccCCHH--------HHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 3445999999999999753 2322110 01111 222368899999999999999865 9998765443
No 219
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.28 E-value=1.6e+02 Score=33.75 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHHHh
Q 002609 471 FKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVE 550 (900)
Q Consensus 471 lk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~e 550 (900)
...||+.||++|+.|+.--|=+ ....+ ..+..||+.+... .|. ..-+.+-+..++.+
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~-----~~~~~----~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~ 336 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLER-----SGPLA----SGGGWYYQTIEDV---------INN-----DGDMYNVLDVLARD 336 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeec-----Ccccc----cCccccccccccc---------ccc-----cccHHHHHHHHHHh
Confidence 4689999999999999876622 11111 0122344432110 000 11144455566678
Q ss_pred cCccEEEecCcc
Q 002609 551 YQIDGFQFHSLS 562 (900)
Q Consensus 551 ygVDGFRfD~~~ 562 (900)
.||||+=-|-..
T Consensus 337 ~GvDGvftD~p~ 348 (356)
T cd08560 337 VGILGIFSDWPA 348 (356)
T ss_pred cCCCEEEccCCC
Confidence 999999888543
No 220
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=27.01 E-value=1.1e+02 Score=33.87 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEecCcccchhccCCccccCCChhhhhhcccchh-HHHHHHHHHHHHHhc
Q 002609 531 YDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLSSMIYTHNGFASLTGDLEEYCNQYVDKD-ALLYLILANEILHAL 604 (900)
Q Consensus 531 ~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~~m~~~~~g~~~~~g~~~~~~~~~~d~~-a~~~l~~~~~~l~~~ 604 (900)
.+++..|+.+++++.-+++++++||+-+|--. +. ..+.+ -..|+++++..+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~-------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LP-------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CC-------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 45788899899999999999999999999431 10 00111 245788888888765
No 221
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=53 Score=38.33 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=30.7
Q ss_pred CCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecc
Q 002609 457 NLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVH 491 (900)
Q Consensus 457 ~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~ 491 (900)
.+-+++...|+..+++++++.||++|+-|++|-+.
T Consensus 167 ais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 167 ALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred EEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 34457778899999999999999999999999983
No 222
>PRK04302 triosephosphate isomerase; Provisional
Probab=26.48 E-value=1.2e+02 Score=32.30 Aligned_cols=44 Identities=30% Similarity=0.307 Sum_probs=33.3
Q ss_pred hhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEee
Q 002609 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 426 L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDv 489 (900)
+..|+++|++.| |.|--|.. -..+|+++++++|++.||.+|+++
T Consensus 78 ~~~l~~~G~~~v-ii~~ser~-------------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGT-LINHSERR-------------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEE-EEeccccc-------------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 789999999999 34422211 135679999999999999999754
No 223
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=26.37 E-value=76 Score=36.30 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=43.4
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYS 494 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~ 494 (900)
+.|.-|+++|+|.|.| +|..+... +. ..-.|-.+.++..+.|+.|+++|+. |-+|+.++.-
T Consensus 104 e~l~~lk~~G~nrisi-GvQS~~d~------vL---~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 104 SQINLLKKNKVNRISL-GVQSMNNN------IL---KQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred HHHHHHHHcCCCEEEE-ecccCCHH------HH---HHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 3499999999999864 44443221 01 1113445789999999999999997 8899987643
No 224
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.03 E-value=94 Score=34.13 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=42.6
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
++.+..||++|++.|.+. .| .. +.-|-.+.+. .+.++..+.++.||++||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 345999999999999876 22 11 1111223332 4789999999999999999988877654
No 225
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=25.65 E-value=1.1e+02 Score=34.55 Aligned_cols=60 Identities=20% Similarity=0.167 Sum_probs=41.2
Q ss_pred HhhhhHHHHcCcc-eEEEeeeeecCCCCCCCCccCCC-cccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 423 EKVLPHVKEAGYN-VIQLFGVVEHKDYFTVGYRVTNL-YAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 423 ek~L~yLk~LGvn-~I~LmPv~e~~~~~~wGY~~~~y-fa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
++.|..|++.|++ .|.|-. |+... .-. ..+.-.+ |.+++.+.++.+|++||.|.+++.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~d-------~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAND-------RIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCCH-------HHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 3448899999998 576533 11111 111 1233333 78999999999999999999999865
No 226
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=25.64 E-value=1.2e+02 Score=30.59 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=36.3
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecc
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVH 491 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~ 491 (900)
+.-=|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|.+.
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 3455778899777665 233333332211478999999999999999999974
No 227
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=24.99 E-value=7.8e+02 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEeec
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV 490 (900)
.+.||+|++++|++|-.+++-+.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~ 104 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT 104 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc
Confidence 57899999999999999998885
No 228
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=24.93 E-value=74 Score=36.62 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeeccccccccc
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIVHSYSAADQ 498 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV~NH~~~~~ 498 (900)
|.+-||++...||+.||-||-|=||.|+.-++
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 47889999999999999999999999987543
No 229
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=24.65 E-value=1.2e+02 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=29.3
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEE
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV 485 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~V 485 (900)
+..+..|+++|.+.|-.+|+-- .-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~G--------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMGG--------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---TT--------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCcee
Confidence 3458999999999999888531 224789999999999998876
No 230
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.26 E-value=92 Score=35.91 Aligned_cols=62 Identities=29% Similarity=0.341 Sum_probs=43.5
Q ss_pred hhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEE-EEeeccccccc
Q 002609 425 VLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLV-FLDIVHSYSAA 496 (900)
Q Consensus 425 ~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~V-ILDvV~NH~~~ 496 (900)
.|..|+++|+|.|.|-. ..+ ++.-+-.+ .+..+.++..+-|+.|++.|+.+ -+|+.++.-+.
T Consensus 109 ~l~~Lk~~Gv~risiGv-qS~--------~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 109 RFVGYQRAGVNRISIGV-QSF--------SEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHcCCCEEEecc-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 39999999999997643 111 11111122 34568999999999999999976 49998776554
No 231
>PRK07094 biotin synthase; Provisional
Probab=24.16 E-value=92 Score=34.84 Aligned_cols=61 Identities=15% Similarity=-0.005 Sum_probs=42.7
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
++.+..|++.|++.|.+ .+ |.. ++.-+-.+.+ -.+.++..+.++.||++||.|-.++++.+
T Consensus 129 ~e~l~~Lk~aG~~~v~~-gl-Es~-------~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RH-ETA-------DKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCCEEEe-cc-ccC-------CHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEEC
Confidence 34589999999999874 22 211 1112223333 25789999999999999999988888664
No 232
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.04 E-value=74 Score=34.76 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCcEEEEee
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDI 489 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDv 489 (900)
.+++++|++.||..||.|+..|
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5789999999999999999997
No 233
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=23.91 E-value=1e+02 Score=35.43 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=43.4
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccccc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAA 496 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~ 496 (900)
+.|..|+++|+|.|.|- |..+.. .- ...-.+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 101 e~l~~l~~~G~~rvsiG-vqS~~~--------~~-l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 101 EKLQVLKDSGVNRISLG-VQTFND--------EL-LKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCH--------HH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 44999999999998753 332221 11 11123446789999999999999998 668998765443
No 234
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=23.58 E-value=1.1e+03 Score=26.89 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccc
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAAD 497 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~ 497 (900)
.+.||++++++|++|-++++-+. |++..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCC
Confidence 68899999999999999999875 65544
No 235
>PRK12928 lipoyl synthase; Provisional
Probab=23.56 E-value=1.7e+02 Score=32.52 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=46.2
Q ss_pred ChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 417 SFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 417 t~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
|..++.+. |..|+++|++.|.+.+-.. |+--.-+=.+|=+|++|.++-+.|.+.|+.-+.
T Consensus 217 T~ed~~et-l~~Lrel~~d~v~i~~Yl~----------p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 217 TEDEVIET-LRDLRAVGCDRLTIGQYLR----------PSLAHLPVQRYWTPEEFEALGQIARELGFSHVR 276 (290)
T ss_pred CHHHHHHH-HHHHHhcCCCEEEEEcCCC----------CCccCCceeeccCHHHHHHHHHHHHHcCCceeE
Confidence 67788876 9999999999887765322 233344557888999999999999999986543
No 236
>PRK06256 biotin synthase; Validated
Probab=23.52 E-value=86 Score=35.31 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=43.5
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+.++.+..||+.|++.|.+.. |. .. .-|-.+.+. .+.++..+.|+.||+.||.|-..+++.+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~l--Et-s~-------~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNL--ET-SR-------SYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCC--cc-CH-------HHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 344558999999999997632 22 11 112223332 4789999999999999999988887664
No 237
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.35 E-value=1.7e+02 Score=27.44 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=40.0
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
++.....+..+|++++.+-+....... .--....|..-+=+.=|...++.++++.||++|+.||.
T Consensus 15 a~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 15 ARKIAATLSSTGTPAFFLHPTEALHGD-LGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHHHhhcCCCceEEcccchhhccc-cCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 334445667789999877553211110 01112233333335557789999999999999999886
No 238
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.29 E-value=4.2e+02 Score=29.54 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCC---HHHHHHHHHHH
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDD---LDVLHFLLSNL 544 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~---~~vr~~lld~l 544 (900)
.+.+|++++++|+.|-++++-+. |.+....... .+.. . +.............+ -..+. .++.+.+.+++
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql~--h~G~~~~~~~---~~~~-~-~~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQLA--HAGRQAQPNL---TGGP-P-PAPSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHhh--CCCcCCCCcC---CCCC-c-cCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 78999999999999999988874 5554331111 1100 0 000000000000000 01122 23445556677
Q ss_pred HHHHHhcCccEEEecCcc
Q 002609 545 NWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 545 ~~Wl~eygVDGFRfD~~~ 562 (900)
+... +.|+||+-+.++.
T Consensus 148 ~~a~-~aGfDgveih~~~ 164 (327)
T cd02803 148 RRAK-EAGFDGVEIHGAH 164 (327)
T ss_pred HHHH-HcCCCEEEEcchh
Confidence 7766 7899999999763
No 239
>PRK05939 hypothetical protein; Provisional
Probab=23.15 E-value=89 Score=36.27 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.5
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 461 VSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 461 ~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
|....|...+++++++.||++|+.||+|-.+.
T Consensus 140 p~NptG~v~dl~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 140 IANPGTQVADLAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred CCCCCCCHHhHHHHHHHHHHcCCEEEEECCcc
Confidence 44457888999999999999999999998753
No 240
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.12 E-value=1.1e+02 Score=36.20 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=44.9
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCc-EEEEeeccccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGL-LVFLDIVHSYSAA 496 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI-~VILDvV~NH~~~ 496 (900)
+++.|..|+++|+|.|.|-- ..+.. .- ...-.+-.+.++..+.|+.+++.|| .|-+|+.++.-+.
T Consensus 150 t~e~l~~l~~aG~~risiGv-qS~~~--------~~-L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGV-QDFDP--------EV-QKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCCCH--------HH-HHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 44459999999999987532 22111 01 1111344688999999999999999 8999998775444
No 241
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.00 E-value=7e+02 Score=31.29 Aligned_cols=123 Identities=14% Similarity=0.071 Sum_probs=70.3
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHH-HHHHHHHHh-hcCcEEEEeecccccccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDD-FKRLVDEAH-GLGLLVFLDIVHSYSAADQM 499 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~e-lk~LV~~aH-~~GI~VILDvV~NH~~~~~~ 499 (900)
.++.|++|+++|+|+|+|-+..+..+++. . ...|=|+.++-=..| |-+..=.++ +.|++|..-+-.-
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~gdg~---~-~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl------- 404 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKGDGN---I-RQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVL------- 404 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCCCCc---e-eeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehh-------
Confidence 34679999999999999999877655421 1 122223333333444 444434444 5699998777532
Q ss_pred cccccCCCCC----CccccCC-CCCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEec
Q 002609 500 VGLSQFDGSN----DCYFHTG-KRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFH 559 (900)
Q Consensus 500 ~~l~~fdg~~----~~yf~~~-~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD 559 (900)
.|+-.+ ...+..+ ....+..-+-.-|.--+|++|+.|.+...-...--.|||+=|.
T Consensus 405 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilfh 465 (672)
T PRK14581 405 ----AFDMDPSLPRITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYH 465 (672)
T ss_pred ----hccCCcccchhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 121100 0001100 0001111122345566899999999998888855589998775
No 242
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=22.98 E-value=1.4e+02 Score=36.07 Aligned_cols=75 Identities=11% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecCCC--CCCCCccCCCcccCCCCCCHHHHHHH
Q 002609 397 KSLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDY--FTVGYRVTNLYAVSSRYGTPDDFKRL 474 (900)
Q Consensus 397 ~~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~--~~wGY~~~~yfa~~~~yGt~~elk~L 474 (900)
..+-+|.++. ...-++|+|..++..+++-+..-|.+.++|+|+..-... .+-.|.+.+=+++++-|=+++.|-++
T Consensus 16 ~~v~L~~~~~---~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~e~ 92 (520)
T COG1640 16 SGVQLYSLRL---PGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALPEF 92 (520)
T ss_pred ceeEEeeecc---CCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhhhh
Confidence 3455555543 223468999999999888898999999999999876522 24568888878888888777766666
No 243
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=22.87 E-value=1e+02 Score=28.81 Aligned_cols=52 Identities=12% Similarity=0.161 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCHHHHhhhccccceEEeccCeEEEEEecCCceEEEEEeecCC
Q 002609 102 NRKDEIFKRFLNLMEFSTGYEIVGMHRNVEHRVDFMDWAPGARYCALVGDFNG 154 (900)
Q Consensus 102 ~~~~~~~~~~~~l~~fa~~~~~~G~~~~~~~~~~~~ewap~a~~~~l~Gdfn~ 154 (900)
++++.|.+.+||+++|-.-+...++... ..|+++-.|-|....+.++--.|.
T Consensus 6 ~l~~~I~~~FGS~d~fk~~f~~~a~~~~-GsGW~wLv~d~~~~~L~i~~t~n~ 57 (106)
T PF02777_consen 6 KLKKAIEEDFGSFDNFKAEFTAAALSVF-GSGWVWLVYDPSDGKLSIISTPNH 57 (106)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHSS-SSEEEEEEEETTTTEEEEEEEETT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCCeeeeeeccccceeeeeeeccc
Confidence 4678899999999999999999998763 457999999999999999988876
No 244
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.83 E-value=68 Score=35.56 Aligned_cols=24 Identities=13% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 466 GTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 466 Gt~~elk~LV~~aH~~GI~VILDvV 490 (900)
.=.|-.++||++|++. |.|+||+-
T Consensus 134 ~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CHHHHHHHHHHHhcce-eEEEeecc
Confidence 3368899999999998 99999994
No 245
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=22.63 E-value=92 Score=34.17 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 467 TPDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 467 t~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+.+++++|++-||+.|+.||+|-++....
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~~~ 178 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAELV 178 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhhce
Confidence 57899999999999999999999976433
No 246
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.43 E-value=1.3e+02 Score=32.69 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEE
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVF 486 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VI 486 (900)
+.+. |..++++||++|+|.+ -... -+..+.+ -+++++++|.+.+-+.||.|.
T Consensus 18 ~~e~-l~~~~~~G~~~VEl~~-~~~~----~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 18 WLER-LQLAKTCGFDFVEMSV-DETD----DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHH-HHHHHHcCCCEEEEec-CCcc----chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 4444 9999999999999943 1110 0011111 257889999999999999985
No 247
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=22.17 E-value=73 Score=28.83 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=21.3
Q ss_pred CceEEEEEeecCCCCCC-CcccccCCccCCCCceEEEEE
Q 002609 142 GARYCALVGDFNGWSPT-ENCAREGHLGHDDYGYWFIIL 179 (900)
Q Consensus 142 ~a~~~~l~Gdfn~W~~~-~~~~~~~~~~~~~~g~w~~~~ 179 (900)
+|..|++-+-||+|... ...|+.-. ..++.|.|+.+|
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~-~~~~~~~~~~tv 54 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMC-VPDEGGWWKATV 54 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEES-S---TTEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceee-eeecCCEEEEEE
Confidence 79999999999999876 44564100 012379999998
No 248
>PRK05967 cystathionine beta-lyase; Provisional
Probab=22.07 E-value=97 Score=36.07 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.2
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 461 VSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 461 ~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
|....++..+++++++.||++|+-||+|-++.
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 44446889999999999999999999999975
No 249
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=22.03 E-value=96 Score=34.80 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEecC
Q 002609 532 DDLDVLHFLLSNLNWWVVEYQIDGFQFHS 560 (900)
Q Consensus 532 ~~~~vr~~lld~l~~Wl~eygVDGFRfD~ 560 (900)
.+++.|+-+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46788998999999999999999999993
No 250
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.99 E-value=1.1e+02 Score=36.17 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=44.4
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAA 496 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~ 496 (900)
++.|..|+++|+|.|.|-. ..+. +.-. ..-.+-.+.++..+.|+.|++.||. |-+|+.++.-+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~~--------~~vl-~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDFD--------PQVQ-KAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCC--------HHHH-HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 3459999999999997643 2111 1111 1124456889999999999999997 889998765443
No 251
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.98 E-value=2.1e+02 Score=30.84 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=36.0
Q ss_pred HHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 421 FTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 421 ~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
+.+. ++++.++|+++|||.+-..+.. . +..-+++++++|-+.+.+.||.|.+
T Consensus 12 ~~~~-~~~~~~~G~~~vel~~~~~~~~-----------~---~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKA-FIEAVDIGARSFQLFLGNPRSW-----------K---GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHH-HHHHHHcCCCEEEEECCCCCCC-----------C---CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444 9999999999999965333221 0 1124567788888888889998654
No 252
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=21.88 E-value=2.7e+02 Score=33.32 Aligned_cols=66 Identities=11% Similarity=0.204 Sum_probs=43.3
Q ss_pred CChhhHHHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 416 SSFNEFTEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 416 Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
..|.-..+. +..+++||+|+.-+.=-...-.- -|.. -...-...+=.++||++|+++||.+|+.+.
T Consensus 68 D~Yhry~eD-i~l~~~lG~~~yR~si~WsRi~P--~g~~------~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 68 DFYHRYKED-IALMAEMGFKVFRTSIAWSRLFP--QGDE------LTPNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred chhhhhHHH-HHHHHHcCCCeEEeeceeeeeee--CCCC------CCCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 457777788 99999999999865432221100 0000 000112256688999999999999999886
No 253
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=21.67 E-value=1.1e+02 Score=37.17 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=42.6
Q ss_pred HhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 423 EKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 423 ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
++.|..|+++|+|.|+|-. +.... .+. -++ .|=-|.++..+.++.++++||.|.+|+.++
T Consensus 206 ~e~L~~L~~~G~~rVslGV-QS~~d------~VL--~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGV-QTIYN------DIL--ERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred HHHHHHHHHcCCCEEEEEC-ccCCH------HHH--HHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 3459999999999998643 22111 011 112 333478999999999999999999999865
No 254
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=21.36 E-value=3.1e+02 Score=30.72 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=75.6
Q ss_pred hHHHhhhhHHHHcCcceEEEeeeeecCCC-CCCCCccCCCcccCCCCCC---HHHHHHHHHHHhhcCcEEEEeecccccc
Q 002609 420 EFTEKVLPHVKEAGYNVIQLFGVVEHKDY-FTVGYRVTNLYAVSSRYGT---PDDFKRLVDEAHGLGLLVFLDIVHSYSA 495 (900)
Q Consensus 420 g~~ek~L~yLk~LGvn~I~LmPv~e~~~~-~~wGY~~~~yfa~~~~yGt---~~elk~LV~~aH~~GI~VILDvV~NH~~ 495 (900)
+..+..+.-||+.|+|++ |.+..++ +.--|...+-+ ....++ .-|.+.+|++|.++||.+|.-+|.=--.
T Consensus 77 k~~de~fk~ikdn~~Na~----ViD~Kdd~G~lty~s~d~~--~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~ 150 (400)
T COG1306 77 KRLDELFKLIKDNNINAF----VIDVKDDYGELTYPSSDEI--NKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDT 150 (400)
T ss_pred hHHHHHHHHHHhCCCCEE----EEEecCCCccEeccccchh--hhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeee
Confidence 344455889999999998 4555433 33345555422 122233 4578889999999999999998832111
Q ss_pred c---ccccccccCC-CCCCccccCCC---CCccCCCCCccccCCCHHHHHHHHHHHHHHHHhcCccEEEecCcc
Q 002609 496 A---DQMVGLSQFD-GSNDCYFHTGK---RGFHKYWGTRMFKYDDLDVLHFLLSNLNWWVVEYQIDGFQFHSLS 562 (900)
Q Consensus 496 ~---~~~~~l~~fd-g~~~~yf~~~~---~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl~eygVDGFRfD~~~ 562 (900)
. ..+.-+..+. |.++.-|..+. ...+..| .+--++.+.+|=+..++-=+ +||||-..||-+.
T Consensus 151 ~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW----Vd~y~~~~WeYNvtIAKEa~-~fGfdEiQFDYIR 219 (400)
T COG1306 151 ILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW----VDAYDKNLWEYNVTIAKEAA-KFGFDEIQFDYIR 219 (400)
T ss_pred eEEeecCceEEEEcCCCcchhhhcccccccccceee----ecccchhhhhhhHHHHHHHH-HcCccceeeeEEE
Confidence 0 0000011111 11222222110 0011223 23346778999888888866 8999999999654
No 255
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.35 E-value=1.2e+03 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecccccccc
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAAD 497 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~~ 497 (900)
.+.||+|++++|++|-++++-+- |++..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcC
Confidence 78999999999999999999885 55543
No 256
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.24 E-value=3.9e+02 Score=29.65 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCcEEEEeecccccccccccccccCCCCCCccccCCCCCccCCCCCccccCCCHHHHHHHHHHHHHHH
Q 002609 469 DDFKRLVDEAHGLGLLVFLDIVHSYSAADQMVGLSQFDGSNDCYFHTGKRGFHKYWGTRMFKYDDLDVLHFLLSNLNWWV 548 (900)
Q Consensus 469 ~elk~LV~~aH~~GI~VILDvV~NH~~~~~~~~l~~fdg~~~~yf~~~~~g~~~~wg~~~ln~~~~~vr~~lld~l~~Wl 548 (900)
+.++++|+.|+++|+.|..-+.+...++. ++ + . -.+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~~--------~~------~-----------------~---~~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCPY--------EG------E-----------------V---PPEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCCC--------CC------C-----------------C---CHHHHHHHHHHHH
Confidence 45888999999999988776654311111 10 0 0 1356777777776
Q ss_pred HhcCccEEEe-cCccc
Q 002609 549 VEYQIDGFQF-HSLSS 563 (900)
Q Consensus 549 ~eygVDGFRf-D~~~~ 563 (900)
+.|+|.+++ |.++.
T Consensus 166 -~~G~d~i~l~DT~G~ 180 (287)
T PRK05692 166 -ALGCYEISLGDTIGV 180 (287)
T ss_pred -HcCCcEEEeccccCc
Confidence 789998887 54443
No 257
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.24 E-value=1.2e+02 Score=34.66 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeecccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSA 495 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~ 495 (900)
.++.|..|+++|+|.|.|- |...... -.-++ .+-.+.++..+-|+.+++.||. |-+|+.++.-+
T Consensus 98 t~e~l~~l~~~G~~rvsiG-vqS~~d~--------~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIG-LQAWQNS--------LLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEE-CccCCHH--------HHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 3345999999999988653 3332211 11112 3445789999999999999997 77999876443
No 258
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.94 E-value=9.9e+02 Score=27.48 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeccccccc
Q 002609 468 PDDFKRLVDEAHGLGLLVFLDIVHSYSAA 496 (900)
Q Consensus 468 ~~elk~LV~~aH~~GI~VILDvV~NH~~~ 496 (900)
.+.||+|++++|++|=++++-+. |.+.
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr 103 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGA 103 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCC
Confidence 68999999999999999999985 4454
No 259
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.92 E-value=63 Score=32.77 Aligned_cols=45 Identities=20% Similarity=0.114 Sum_probs=34.4
Q ss_pred hhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcEEEE
Q 002609 426 LPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFL 487 (900)
Q Consensus 426 L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~VIL 487 (900)
|..++++|++.|+|.+....... .. .++++++.+.+.+.||.|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~-----------~~------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWD-----------EK------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHT-----------HH------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccc-----------cc------hHHHHHHHHHHHHcCCeEEE
Confidence 45789999999999886544321 00 68899999999999999654
No 260
>PRK09028 cystathionine beta-lyase; Provisional
Probab=20.91 E-value=1.1e+02 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCcEEEEeeccc
Q 002609 463 SRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 492 (900)
Q Consensus 463 ~~yGt~~elk~LV~~aH~~GI~VILDvV~N 492 (900)
...|...+++++++.||++|+.||+|-++.
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 335889999999999999999999999875
No 261
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=20.87 E-value=3.5e+02 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.1
Q ss_pred ceeEEEEEcCcEEEEEE
Q 002609 877 RNCIEVPLPSRTAQVYK 893 (900)
Q Consensus 877 ~~~~~l~LP~rsa~Vl~ 893 (900)
.+...+.+||+|..|+.
T Consensus 41 dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 41 DGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp TSEEEEEE-TTEEEEEE
T ss_pred CeEEEEEECCCEEEEeC
Confidence 34789999999999874
No 262
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.86 E-value=1e+02 Score=36.40 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=43.7
Q ss_pred HHhhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeeccccccc
Q 002609 422 TEKVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAA 496 (900)
Q Consensus 422 ~ek~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~ 496 (900)
.++.|..|+++|+|.|.|-. ..... .-.-.+ .+-.+.++..+.|+.+++.||. |-+|+.++.-+.
T Consensus 150 ~~e~l~~lk~~G~~risiGv-qS~~~--------~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV-QDFNK--------EVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC-CCCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 34459999999999997632 11110 001112 2345789999999999999996 779998765443
No 263
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=20.76 E-value=83 Score=36.12 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCcEEEEeecccc
Q 002609 463 SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSY 493 (900)
Q Consensus 463 ~~yGt~~elk~LV~~aH~~GI~VILDvV~NH 493 (900)
+..|+..+++++++.||++|+.||+|-++..
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~~ 199 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYTV 199 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCccc
Confidence 4578889999999999999999999998653
No 264
>PLN03231 putative alpha-galactosidase; Provisional
Probab=20.75 E-value=1.3e+03 Score=26.56 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=72.9
Q ss_pred hhhHHHhhhhHHHHcCcceEEEeeeeecCC--------CCCCCCc---cCCCcccCC-CCCC---HHHHHHHHHHHhhcC
Q 002609 418 FNEFTEKVLPHVKEAGYNVIQLFGVVEHKD--------YFTVGYR---VTNLYAVSS-RYGT---PDDFKRLVDEAHGLG 482 (900)
Q Consensus 418 ~~g~~ek~L~yLk~LGvn~I~LmPv~e~~~--------~~~wGY~---~~~yfa~~~-~yGt---~~elk~LV~~aH~~G 482 (900)
++..++-+-..||++||+.|-|==-...+. ..+.+|. ...-..|++ +|=+ -.-||.|.+.+|++|
T Consensus 20 i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~G 99 (357)
T PLN03231 20 FLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALG 99 (357)
T ss_pred HHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCC
Confidence 444455444589999999996532221110 0012221 112222332 2221 236999999999999
Q ss_pred cEEEEeeccc-cccccccccc--ccCCCCCCccccCCCC--C-ccCCCCC---ccccCCCHHHHHHHHHHHHHHHHhcCc
Q 002609 483 LLVFLDIVHS-YSAADQMVGL--SQFDGSNDCYFHTGKR--G-FHKYWGT---RMFKYDDLDVLHFLLSNLNWWVVEYQI 553 (900)
Q Consensus 483 I~VILDvV~N-H~~~~~~~~l--~~fdg~~~~yf~~~~~--g-~~~~wg~---~~ln~~~~~vr~~lld~l~~Wl~eygV 553 (900)
++.=+=+-.. +++... ..+ ..+.|+....+...+- . ....|.. .-+|.+++..++|+-+-++.+. +.||
T Consensus 100 LKfGIY~~~G~~tca~~-~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA-~WGV 177 (357)
T PLN03231 100 LKLGIHVMRGISTTAVK-KKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYA-SWGI 177 (357)
T ss_pred cceEEEecCCccchhcc-cCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHH-HhCC
Confidence 9875543322 111100 000 0011111111111000 0 0011211 2458889999999999999998 7999
Q ss_pred cEEEecCc
Q 002609 554 DGFQFHSL 561 (900)
Q Consensus 554 DGFRfD~~ 561 (900)
|=..+|..
T Consensus 178 DylK~D~c 185 (357)
T PLN03231 178 DFIKHDCV 185 (357)
T ss_pred CEEeeccc
Confidence 99999954
No 265
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=20.34 E-value=88 Score=30.36 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCcEEEEeec
Q 002609 463 SRYGTPDDFKRLVDEAHGLGLLVFLDIV 490 (900)
Q Consensus 463 ~~yGt~~elk~LV~~aH~~GI~VILDvV 490 (900)
.++.+..|+|.+-...-+.||+|++|=-
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Idkk 43 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKIDKK 43 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEECCc
Confidence 4677899999999999999999999843
No 266
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.29 E-value=1.3e+02 Score=35.00 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=44.9
Q ss_pred hhhhHHHHcCcceEEEeeeeecCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHhhcCcE-EEEeecccccccc
Q 002609 424 KVLPHVKEAGYNVIQLFGVVEHKDYFTVGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLL-VFLDIVHSYSAAD 497 (900)
Q Consensus 424 k~L~yLk~LGvn~I~LmPv~e~~~~~~wGY~~~~yfa~~~~yGt~~elk~LV~~aH~~GI~-VILDvV~NH~~~~ 497 (900)
+.|..|+++|||.|.|- |+.+... - ...-.|--+.++..+.|+.+++.||. |-+|+.++.-+..
T Consensus 116 e~l~~l~~~GvnrislG-vQS~~d~--------~-L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLG-VQAFQDE--------L-LALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHCCCCEEEEE-cccCCHH--------H-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 34999999999999753 3322210 0 11123445789999999999999999 7899998765543
No 267
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=20.20 E-value=3.8e+02 Score=31.79 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=52.3
Q ss_pred CceEEEEecCccCCCCCCCChhhHHHhhhhHHHHcCcceEEEeeeeecC-----C-CCCCCCcc--CCCcccCCCCCCHH
Q 002609 398 SLRIYECHVGISGSKPKISSFNEFTEKVLPHVKEAGYNVIQLFGVVEHK-----D-YFTVGYRV--TNLYAVSSRYGTPD 469 (900)
Q Consensus 398 ~~vIYE~hV~~~~~~~~~Gt~~g~~ek~L~yLk~LGvn~I~LmPv~e~~-----~-~~~wGY~~--~~yfa~~~~yGt~~ 469 (900)
-.+|--++-. +..+..++=+.+..+.+.++++.|+..+++.|=.||- . ...++... .-||.+.+--...+
T Consensus 89 a~v~cdv~~~--~g~p~~~dPR~vlkr~~~~l~~~G~~~~~~g~E~EFfLfd~~~~~~~~~~~~~~~~yf~~~~~~~~~~ 166 (443)
T COG0174 89 ARVLCDVYDP--DGTPYPRDPRSVLKRALARLKDEGLAPAVVGPELEFFLFDRDGRDPDGGRPADKGGYFDVAPLDEAED 166 (443)
T ss_pred EEEEEEEECC--CCCcCCCChHHHHHHHHHHHHhcCCccceeecceeEEEeecccCCcccCccCCCCcccCccccccHHH
Confidence 3445444443 2233345667888889999999999768888866652 1 11112111 34555544333345
Q ss_pred HHHHHHHHHhhcCcEE
Q 002609 470 DFKRLVDEAHGLGLLV 485 (900)
Q Consensus 470 elk~LV~~aH~~GI~V 485 (900)
=+++++.++-++||.|
T Consensus 167 ~~~di~~~l~~~Gi~i 182 (443)
T COG0174 167 FRRDIVEALEAAGIEI 182 (443)
T ss_pred HHHHHHHHHHHCCCCc
Confidence 5678888888888775
Done!