Query 002610
Match_columns 900
No_of_seqs 390 out of 2889
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-282 3E-287 2292.8 51.1 887 4-896 6-892 (892)
2 PLN00070 aconitate hydratase 100.0 5E-271 1E-275 2360.3 77.3 893 4-897 42-935 (936)
3 PTZ00092 aconitate hydratase-l 100.0 9E-268 2E-272 2330.6 76.7 884 5-897 14-897 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 1E-265 3E-270 2307.9 74.1 864 22-896 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 3E-264 6E-269 2303.6 75.9 876 4-897 3-889 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-263 2E-268 2293.9 78.2 877 1-897 1-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-259 7E-264 2246.1 72.8 834 22-897 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 1E-257 2E-262 2205.7 66.1 851 11-897 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 6E-179 1E-183 1570.3 58.8 697 60-891 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 3E-164 7E-169 1438.6 53.4 637 60-896 2-645 (646)
11 TIGR01342 acon_putative aconit 100.0 4E-162 8E-167 1418.4 52.2 642 62-896 1-653 (658)
12 TIGR00139 h_aconitase homoacon 100.0 2E-144 3E-149 1267.1 50.7 660 61-895 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 6E-142 1E-146 1250.7 51.3 682 60-893 34-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 8E-136 2E-140 1137.2 46.1 702 60-893 58-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 4E-130 8E-135 1081.8 36.6 400 86-570 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 3E-121 6E-126 1036.7 41.2 453 60-571 2-460 (465)
17 PRK12466 isopropylmalate isome 100.0 7E-121 1E-125 1035.1 41.0 453 60-571 3-462 (471)
18 PRK05478 isopropylmalate isome 100.0 4E-120 8E-125 1029.1 40.7 453 60-571 2-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 4E-121 9E-126 1039.7 30.8 457 62-568 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 2E-118 5E-123 998.4 36.8 409 86-570 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 1E-114 2E-119 963.1 37.6 380 86-570 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 4E-114 8E-119 964.2 39.3 405 62-571 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 2E-113 4E-118 960.1 40.0 407 60-571 2-412 (418)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-113 3E-118 959.5 38.7 405 61-571 1-408 (412)
25 cd01585 AcnA_Bact Aconitase ca 100.0 2E-113 4E-118 950.2 36.1 379 85-570 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 1E-112 3E-117 950.8 40.2 409 61-571 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 9E-111 2E-115 910.5 36.8 410 61-571 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 8E-105 2E-109 892.4 37.7 403 63-570 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 8E-104 2E-108 867.3 35.4 361 86-570 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 2.8E-99 6E-104 846.0 35.6 388 86-570 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 4.4E-97 9E-102 870.9 39.4 408 59-570 369-809 (835)
32 TIGR00117 acnB aconitate hydra 100.0 7.8E-96 2E-100 857.6 41.7 407 59-570 370-809 (844)
33 PLN00094 aconitate hydratase 2 100.0 1.6E-93 3.5E-98 835.5 38.7 408 59-570 442-883 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1E-68 2.2E-73 527.2 12.3 170 674-843 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 2.4E-47 5.3E-52 426.7 24.4 417 60-605 372-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 4.9E-43 1.1E-47 381.9 16.6 405 339-846 13-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 6.6E-40 1.4E-44 319.3 8.7 141 674-843 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 1.1E-35 2.4E-40 297.7 11.7 156 672-895 4-159 (163)
39 PRK14023 homoaconitate hydrata 100.0 1.6E-35 3.6E-40 296.7 11.1 157 672-897 4-160 (166)
40 TIGR02084 leud 3-isopropylmala 100.0 1.9E-35 4.1E-40 293.4 9.9 154 672-893 3-156 (156)
41 TIGR02087 LEUD_arch 3-isopropy 100.0 1.9E-35 4E-40 293.1 9.6 152 672-894 3-154 (154)
42 COG0066 LeuD 3-isopropylmalate 100.0 3.5E-35 7.5E-40 294.9 9.1 165 672-896 11-180 (191)
43 PLN00072 3-isopropylmalate iso 100.0 9.4E-34 2E-38 296.6 11.2 170 665-894 68-240 (246)
44 PF00694 Aconitase_C: Aconitas 100.0 4.1E-35 9E-40 282.7 0.9 128 698-825 3-130 (131)
45 cd01579 AcnA_Bact_Swivel Bacte 100.0 3.3E-32 7.2E-37 260.0 5.3 121 674-844 1-121 (121)
46 TIGR00171 leuD 3-isopropylmala 100.0 2.7E-31 5.7E-36 270.7 8.8 163 670-885 10-174 (188)
47 PRK01641 leuD isopropylmalate 100.0 6.5E-31 1.4E-35 270.4 8.4 163 666-885 7-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 100.0 3.7E-29 8.1E-34 227.2 4.8 73 771-844 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 8.3E-29 1.8E-33 223.5 5.7 71 771-843 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 4.6E-26 1E-30 270.5 12.9 165 665-896 165-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 7.5E-27 1.6E-31 222.4 3.9 100 675-825 2-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 8.5E-25 1.8E-29 239.8 5.6 420 60-569 66-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 7.1E-24 1.5E-28 204.3 6.1 54 771-824 52-117 (131)
54 TIGR00117 acnB aconitate hydra 99.9 8.1E-23 1.8E-27 242.4 10.6 164 665-896 166-343 (844)
55 PRK14812 hypothetical protein; 99.8 9.7E-19 2.1E-23 166.6 7.3 91 781-885 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.7 5.4E-18 1.2E-22 201.4 12.6 118 760-896 284-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.2 2E-06 4.2E-11 88.1 6.1 118 760-896 45-175 (204)
58 PF04412 DUF521: Protein of un 95.5 0.036 7.7E-07 64.1 8.2 68 432-507 289-356 (400)
59 COG1049 AcnB Aconitase B [Ener 95.4 0.025 5.5E-07 66.7 6.3 117 761-894 214-342 (852)
60 COG1679 Predicted aconitase [G 92.8 0.28 6.1E-06 55.7 7.4 68 432-507 289-356 (403)
61 cd01355 AcnX Putative Aconitas 90.1 0.66 1.4E-05 53.6 7.0 69 433-512 279-347 (389)
62 TIGR00829 FRU PTS system, fruc 29.4 44 0.00096 30.7 2.6 31 437-468 2-32 (85)
63 PRK03600 nrdI ribonucleotide r 25.9 61 0.0013 32.3 3.0 28 515-542 56-86 (134)
64 PF07972 Flavodoxin_NdrI: NrdI 25.9 60 0.0013 32.0 2.9 42 500-542 41-85 (122)
65 COG1445 FrwB Phosphotransferas 24.9 74 0.0016 31.4 3.3 33 435-468 4-36 (122)
66 COG1833 Uri superfamily endonu 22.3 1.6E+02 0.0034 29.6 5.0 27 488-514 79-105 (132)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-282 Score=2292.79 Aligned_cols=887 Identities=73% Similarity=1.205 Sum_probs=870.6
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEeec
Q 002610 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (900)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (900)
.+||....++|...+. .++||+|++|. ..+++||||||||||+++||||++.|+++++|+||.|+...++..||+|+
T Consensus 6 ~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFk 82 (892)
T KOG0452|consen 6 ENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFK 82 (892)
T ss_pred cccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeeccc
Confidence 4789876778887754 79999999998 68999999999999999999999999999999999999877778899999
Q ss_pred cceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhh
Q 002610 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (900)
Q Consensus 84 pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~ 163 (900)
|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||||+|+.++++|+++|+..||+||+|||.||||
T Consensus 83 PARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKW 162 (892)
T KOG0452|consen 83 PARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKW 162 (892)
T ss_pred cceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceecCCCCcceeeeeecccceeeecCCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeec
Q 002610 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (900)
Q Consensus 164 ~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (900)
+.++|+|+.++|||+||+||||||||||||+..++++|||++|||||||||++|||++||||||||+|++|+|||++|.+
T Consensus 163 gs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvl 242 (892)
T KOG0452|consen 163 GSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVL 242 (892)
T ss_pred hhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHH
Q 002610 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (900)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~Y 323 (900)
|+|||++|+|+|+++||++||+|+||++||+.|++||||||||+|+++||++||+||+||+||||||.||||+|+.|+.|
T Consensus 243 P~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~y 322 (892)
T KOG0452|consen 243 PEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQY 322 (892)
T ss_pred ccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccC
Q 002610 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (900)
Q Consensus 324 L~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~ 403 (900)
|+.|||+++.++.+|+|+|+.++|+++..++.++.|++++++||++|+|+|+||+||+|+++|++|+++|..||++++|+
T Consensus 323 l~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgF 402 (892)
T KOG0452|consen 323 LKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGF 402 (892)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccc
Confidence 99999999999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHH
Q 002610 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (900)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (900)
||+.++++.+++...+.|+|++++|.||+|+||+|+||||+|||++|++|+||||||+++|++|+||+|||++|||.+|+
T Consensus 403 KgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt 482 (892)
T KOG0452|consen 403 KGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVT 482 (892)
T ss_pred cccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhh
Confidence 99999998888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHH
Q 002610 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (900)
Q Consensus 484 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (900)
.||.++|++++|+++||.|+||||+|||||||+|.+++.++|++|++++++|+|||||||||+||.+++||||||+||+|
T Consensus 483 ~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvva 562 (892)
T KOG0452|consen 483 KYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVA 562 (892)
T ss_pred hhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCC
Q 002610 564 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 643 (900)
Q Consensus 564 ~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~ 643 (900)
|||||+++||+++||||+++||+.|||+||||+++||+++++++|.|+||++.|+.|..|++.|+.|++|++.+|+||++
T Consensus 563 YaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~ 642 (892)
T KOG0452|consen 563 YAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPK 642 (892)
T ss_pred hhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhh
Q 002610 644 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 723 (900)
Q Consensus 644 styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm 723 (900)
||||++||||++|+.+++.+++|++|+||+.|||+||||||||||+|.++|||+|||.+||++|+|||||||||||+|||
T Consensus 643 STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vM 722 (892)
T KOG0452|consen 643 STYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVM 722 (892)
T ss_pred CceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEec
Q 002610 724 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 803 (900)
Q Consensus 724 ~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~ 803 (900)
.||||+|||+.|+++. +.||.|+|+|+||.+.|||||++|+++|.|+||+||++||||||||||||+|.+|||||||||
T Consensus 723 aRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViae 801 (892)
T KOG0452|consen 723 ARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAE 801 (892)
T ss_pred hcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHH
Confidence 9999999999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHH
Q 002610 804 SFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 883 (900)
Q Consensus 804 SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~ 883 (900)
|||||||+||++|||+||+|.+++++++|+|+|.|.++|.+++. .++||+.++|+..+|+.|.+++||||+.|+.||+
T Consensus 802 S~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~ 879 (892)
T KOG0452|consen 802 SYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYK 879 (892)
T ss_pred HHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEe
Confidence 99999999999999999999999999999999999999999984 3899999999988999999999999999999999
Q ss_pred hcCHHHHHHHHHh
Q 002610 884 HGGILQYVIRNLI 896 (900)
Q Consensus 884 aGGiL~yv~~~~~ 896 (900)
+||||||+.|++.
T Consensus 880 ~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 880 NGGILNYMIRKLS 892 (892)
T ss_pred cCCcHHHHHhhcC
Confidence 9999999999873
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=5.4e-271 Score=2360.30 Aligned_cols=893 Identities=90% Similarity=1.430 Sum_probs=854.2
Q ss_pred CCCccccccceecC-CCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEee
Q 002610 4 ENPFKSILKTLQRP-DGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPF 82 (900)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~ 82 (900)
.|||....++|+++ ++ +.|+||+|.++...++++|||||||||||+||||||..++++++++|++|......+.||+|
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 42 ENPFKGILTSLPKPGGG-EFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred cCchhhhhheeeecCCC-ceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 47886533778877 43 33999999998656799999999999999999999999999999999999876666679999
Q ss_pred ccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhh
Q 002610 83 KPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLK 162 (900)
Q Consensus 83 ~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk 162 (900)
+|+||+||||||+|+++|||||||+++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||+|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceecCCCCcceeeeeecccceeeecCCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEee
Q 002610 163 WGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 242 (900)
Q Consensus 163 ~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~ 242 (900)
|++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999768999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHH
Q 002610 243 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 322 (900)
Q Consensus 243 vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~ 322 (900)
+||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++|||||+||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhccccc
Q 002610 323 YLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 402 (900)
Q Consensus 323 YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~ 402 (900)
||+.|||++++++++++|+|+|+||+++..+|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 99999999999999999999999999766778999999999999999999999999999999999999999888876655
Q ss_pred CCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHH
Q 002610 403 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 482 (900)
Q Consensus 403 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V 482 (900)
.+|+..+.++.....+++++|++..+++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 44443322222233456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHH
Q 002610 483 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 562 (900)
Q Consensus 483 ~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVa 562 (900)
++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+|||||.+++||||||++||
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVa 600 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 600 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCC
Q 002610 563 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 642 (900)
Q Consensus 563 A~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~ 642 (900)
||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|++|++.+|+||+
T Consensus 601 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~ 680 (936)
T PLN00070 601 AYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDP 680 (936)
T ss_pred HHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhh
Q 002610 643 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 722 (900)
Q Consensus 643 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~ev 722 (900)
+||||++||||++++..++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||||||||
T Consensus 681 ~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 760 (936)
T PLN00070 681 KSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEI 760 (936)
T ss_pred CcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchh
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEe
Q 002610 723 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 802 (900)
Q Consensus 723 m~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA 802 (900)
|+||||+|+|++|+|++|.+||+|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||
T Consensus 761 m~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA 840 (936)
T PLN00070 761 MARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 840 (936)
T ss_pred hhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHH
Q 002610 803 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 882 (900)
Q Consensus 803 ~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~ 882 (900)
+||+||||+||+|||||||+|.++++++++++.+++.++|+++..+.+++||++++++..+|++|.+++++||+.|++||
T Consensus 841 ~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~ 920 (936)
T PLN00070 841 KSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYF 920 (936)
T ss_pred ccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999876666789999888877788999999999999999999
Q ss_pred HhcCHHHHHHHHHhh
Q 002610 883 DHGGILQYVIRNLIN 897 (900)
Q Consensus 883 ~aGGiL~yv~~~~~~ 897 (900)
++|||||||+|++++
T Consensus 921 ~~GGiL~~v~r~~~~ 935 (936)
T PLN00070 921 DHGGILPYVIRNLIK 935 (936)
T ss_pred HcCCHHHHHHHHHhh
Confidence 999999999999875
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=8.8e-268 Score=2330.64 Aligned_cols=884 Identities=71% Similarity=1.169 Sum_probs=843.4
Q ss_pred CCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEeecc
Q 002610 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 84 (900)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~p 84 (900)
|+|....++|+ ++ +.|+||+|.++...+++||||||||||||+||||||..++++++++|++|......+.||+|+|
T Consensus 14 ~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p 90 (898)
T PTZ00092 14 NPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFKP 90 (898)
T ss_pred CchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeecc
Confidence 67764336777 54 3799999999875679999999999999999999999999999999999987666678999999
Q ss_pred ceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhc
Q 002610 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (900)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~ 164 (900)
|||+||||||+|+++|||||||+++++|+||.+|||.+||+|+|||+||+++++..+++.+|+.+||+||.|||+||+|+
T Consensus 91 ~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~ 170 (898)
T PTZ00092 91 ARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWG 170 (898)
T ss_pred ceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceecCCCCcceeeeeecccceeeecCCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecC
Q 002610 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (900)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (900)
+++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 171 ~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vP 250 (898)
T PTZ00092 171 SKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLP 250 (898)
T ss_pred hhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHH
Q 002610 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (900)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL 324 (900)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||
T Consensus 251 evvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL 330 (898)
T PTZ00092 251 EVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330 (898)
T ss_pred CEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCC
Q 002610 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (900)
Q Consensus 325 ~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~ 404 (900)
+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++....+.+
T Consensus 331 ~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~ 407 (898)
T PTZ00092 331 KQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFK 407 (898)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhh
Confidence 9999999889999999999999973 5779999999999999999999999999999999999999887765544444
Q ss_pred CccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002610 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484 (900)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~ 484 (900)
++.+++.+.....++.++|.++.|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~ 487 (898)
T PTZ00092 408 GFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTK 487 (898)
T ss_pred ccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHH
Confidence 44443322222233446788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHH
Q 002610 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 564 (900)
Q Consensus 485 ~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~ 564 (900)
||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..++||||||+|||||
T Consensus 488 ~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~ 567 (898)
T PTZ00092 488 YLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 567 (898)
T ss_pred HHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCC
Q 002610 565 ALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKS 644 (900)
Q Consensus 565 AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~s 644 (900)
||+|+|+||+++||||+|+||++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|+++++++|+||++|
T Consensus 568 AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~S 647 (898)
T PTZ00092 568 ALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKS 647 (898)
T ss_pred HHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhc
Q 002610 645 TYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 724 (900)
Q Consensus 645 tyi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~ 724 (900)
|||++||||++++.++++..+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+
T Consensus 648 tyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~ 727 (898)
T PTZ00092 648 TYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMV 727 (898)
T ss_pred CcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhc
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecc
Q 002610 725 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKS 804 (900)
Q Consensus 725 rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~S 804 (900)
||||+|+|++|+|+ |.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+|
T Consensus 728 RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~S 806 (898)
T PTZ00092 728 RGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAES 806 (898)
T ss_pred ceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEec
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHh
Q 002610 805 FERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDH 884 (900)
Q Consensus 805 FarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~a 884 (900)
|+||||+||+|||||||+|.+++++++++++++++++|++... .++|+++++++..+|++|.++++++|+.|++||++
T Consensus 807 F~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~ 884 (898)
T PTZ00092 807 FERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKH 884 (898)
T ss_pred HHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHc
Confidence 9999999999999999999999999999999999999986221 57999999987778899999999999999999999
Q ss_pred cCHHHHHHHHHhh
Q 002610 885 GGILQYVIRNLIN 897 (900)
Q Consensus 885 GGiL~yv~~~~~~ 897 (900)
|||||||+|++++
T Consensus 885 GGiL~yv~~~~~~ 897 (898)
T PTZ00092 885 GGILQYVLRKLVK 897 (898)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999875
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.3e-265 Score=2307.88 Aligned_cols=864 Identities=64% Similarity=1.053 Sum_probs=824.9
Q ss_pred eeEEEeCCCCC--CCCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhHHH
Q 002610 22 FGKYYSLPALN--DPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVV 99 (900)
Q Consensus 22 ~~~~~~l~~~~--~~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~ 99 (900)
.|+||+|.+|. ..++++|||||||||||+||||||..++++++++|++|.+....+.||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 58999999885 3479999999999999999999999999999999999986666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCc
Q 002610 100 DLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSG 179 (900)
Q Consensus 100 dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~G 179 (900)
|||||||+++++|+||.+|||.+||+|+||||||++.++..+++.+|+.+||+||+|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecccceeeecCC----CcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEeccc
Q 002610 180 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 255 (900)
Q Consensus 180 I~Hqv~lE~la~~v~~~~----G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L 255 (900)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHH
Q 002610 256 RDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS 335 (900)
Q Consensus 256 ~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~ 335 (900)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCcccccc
Q 002610 336 MIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 414 (900)
Q Consensus 336 ~~e~y~~~~~l~~~~~~~D-~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~ 414 (900)
++++|.|+|++|+ +| ++|.|+++++||||+|||+||||++|||++||++++++|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 9999999999996 34 689999999999999999999999999999999999998877654433333322111
Q ss_pred ccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHH
Q 002610 415 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 494 (900)
Q Consensus 415 ~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~ 494 (900)
.....++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112256888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCC
Q 002610 495 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 574 (900)
Q Consensus 495 l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~ 574 (900)
|+++||+|++||||+||||||+++++++++|.+|+++.+||||+||||+|||||..++||||||+|||||||+|+|+||+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCC
Q 002610 575 ETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 654 (900)
Q Consensus 575 ~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~ 654 (900)
++||+|.|++|++|||+||||+.+||++++.+.++++||.+.|.+++.+++.|++|++++++.|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhh
Q 002610 655 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 734 (900)
Q Consensus 655 ~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~ 734 (900)
+++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcc
Q 002610 735 NKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 814 (900)
Q Consensus 735 N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli 814 (900)
|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~ 793 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLV 793 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHH
Q 002610 815 GMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQY 890 (900)
Q Consensus 815 ~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL~y 890 (900)
|||||||+|++++++++|+++|+|+|+|.... +++||++++++. .+| ++|.+++++||+.|++||++||||||
T Consensus 794 ~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~y 870 (876)
T TIGR01341 794 GMGVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQY 870 (876)
T ss_pred hcCcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999995332 578999888764 577 78999999999999999999999999
Q ss_pred HHHHHh
Q 002610 891 VIRNLI 896 (900)
Q Consensus 891 v~~~~~ 896 (900)
|+|+++
T Consensus 871 v~r~~~ 876 (876)
T TIGR01341 871 VLRKFL 876 (876)
T ss_pred HHHhhC
Confidence 999874
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=2.7e-264 Score=2303.59 Aligned_cols=876 Identities=58% Similarity=0.980 Sum_probs=830.8
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeE
Q 002610 4 ENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEI 80 (900)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei 80 (900)
.|+|.. .++|+++++ .|+||+|.+++. .++++|||||||||||+||||||..|+++++++|++|......+.||
T Consensus 3 ~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHKT-LKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCcccc-ccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 367754 567887754 899999999853 37999999999999999999999999999999999998766667899
Q ss_pred eeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhh
Q 002610 81 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAF 160 (900)
Q Consensus 81 ~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~f 160 (900)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||+++|||+||++.++..+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceecCCCCcceeeeeecccceeeecC----CCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcC
Q 002610 161 LKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 236 (900)
Q Consensus 161 lk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g 236 (900)
|||++++|+||+|+|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|++++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecC
Q 002610 237 QPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 316 (900)
Q Consensus 237 ~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~ 316 (900)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhh
Q 002610 317 DHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHAC 396 (900)
Q Consensus 317 De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~ 396 (900)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999974 57899999999999999999999999999999999999988876
Q ss_pred hcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002610 397 LDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLA 476 (900)
Q Consensus 397 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~ 476 (900)
+....+.+++... .-.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~----------~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKK----------AQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhcc----------cccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 6432221221100 002345578899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEec
Q 002610 477 PGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 556 (900)
Q Consensus 477 PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLa 556 (900)
|||++|++||+++||+++|+++||+|++||||+||||||+++++++++|++||+++++|||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred ChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCC
Q 002610 557 SPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 636 (900)
Q Consensus 557 SP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 636 (900)
||++||||||+|+|+||+++||||+++||++|||+||||+.+||++++++.++++||.+.|++++.+++.|++|+++.++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccC
Q 002610 637 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSR 716 (900)
Q Consensus 637 ~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsr 716 (900)
+|+||++||||++||||+++...++++++|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccC
Q 002610 717 RGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG 796 (900)
Q Consensus 717 rgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lG 796 (900)
|||||||+||||+|+|++|+|+++.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEec
Q 002610 797 VKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIR 872 (900)
Q Consensus 797 VraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~--~~G--~~f~~~~~ 872 (900)
|+||||+||+||||+||+|||||||+|+++.++++|+++++|+++|+.... .++||++++++. .+| .+|.++++
T Consensus 787 v~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r 864 (889)
T PRK12881 787 VKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCR 864 (889)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999975532 578999888653 566 67888999
Q ss_pred CCCHHHHHHHHhcCHHHHHHHHHhh
Q 002610 873 FDTEVELAYFDHGGILQYVIRNLIN 897 (900)
Q Consensus 873 ~~t~~e~~~~~aGGiL~yv~~~~~~ 897 (900)
++|+.|++||++||||+|+++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.1e-263 Score=2293.94 Aligned_cols=877 Identities=61% Similarity=1.033 Sum_probs=835.6
Q ss_pred CCCCCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCc
Q 002610 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQ 77 (900)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~ 77 (900)
|...++|.. .++|+..++ .|+||+|.+|.. .++++|||||||||||+|||||+..++++++++|++|......+
T Consensus 1 ~~~~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~ 77 (888)
T PRK09277 1 MSSTDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPD 77 (888)
T ss_pred CCCCCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCC
Confidence 445578864 567887754 799999988743 47899999999999999999999999999999999998766667
Q ss_pred eeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhh
Q 002610 78 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKER 157 (900)
Q Consensus 78 ~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~er 157 (900)
.||+|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+|+|||+||+++++..+++.+|+.+||+||.||
T Consensus 78 ~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er 157 (888)
T PRK09277 78 REIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEER 157 (888)
T ss_pred ceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccceecCCCCcceeeeeecccceeeecC-CC--cccCCeEeecCCCCcccCccceeeccCChHHHHHHH
Q 002610 158 FAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 234 (900)
Q Consensus 158 y~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~-~G--~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m 234 (900)
|+||||++++|+|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|
T Consensus 158 ~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam 237 (888)
T PRK09277 158 YQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAM 237 (888)
T ss_pred HhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHH
Confidence 999999999999999999999999999999999999977 78 999999999999999999999999999999999999
Q ss_pred cCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeee
Q 002610 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFF 314 (900)
Q Consensus 235 ~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~f 314 (900)
+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++|||||+|||
T Consensus 238 ~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~f 317 (888)
T PRK09277 238 LGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFF 317 (888)
T ss_pred hcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhh
Q 002610 315 PVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWH 394 (900)
Q Consensus 315 p~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~ 394 (900)
|+|++|++||+.|||++++++++|+|.|+|++|+. +|++|.|+++++||||+|+|+||||++|||++||+|++++|.
T Consensus 318 p~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~ 394 (888)
T PRK09277 318 PIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFA 394 (888)
T ss_pred cCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchh
Confidence 99999999999999999999999999999999963 578999999999999999999999999999999999998876
Q ss_pred hhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEE
Q 002610 395 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 474 (900)
Q Consensus 395 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~ 474 (900)
+++.. +.+++ ..+..++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++
T Consensus 395 ~~~~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~ 463 (888)
T PRK09277 395 KSAEL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTS 463 (888)
T ss_pred hhchh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEE
Confidence 54321 11111 12334678888999999999999999999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceE
Q 002610 475 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 554 (900)
Q Consensus 475 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 554 (900)
|+|||++|++||+++||+++|+++||+|++||||+||||||+++++++++|.+||++++||||+||||+|||||..++||
T Consensus 464 v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~y 543 (888)
T PRK09277 464 LAPGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANY 543 (888)
T ss_pred EeCCCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCC
Q 002610 555 LASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS 634 (900)
Q Consensus 555 LaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~ 634 (900)
||||++||||||+|+|+|||++||+|+++||++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|++|++++
T Consensus 544 LaSP~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~ 623 (888)
T PRK09277 544 LASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPE 623 (888)
T ss_pred EcCHHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccc
Q 002610 635 GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYG 714 (900)
Q Consensus 635 ~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg 714 (900)
++.|+||++||||++||||++++.++.++.+|.++|||+++|||||||||||||+|+++||||+||+++|+.++||||||
T Consensus 624 ~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg 703 (888)
T PRK09277 624 GPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYG 703 (888)
T ss_pred CCccccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccc
Confidence 99999999999999999999998877778899999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccc
Q 002610 715 SRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPML 794 (900)
Q Consensus 715 srrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~ 794 (900)
|||||||||+||||+|+|++|+|++|.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++
T Consensus 704 srRgN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~ 783 (888)
T PRK09277 704 SRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRL 783 (888)
T ss_pred cccccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEE
Q 002610 795 LGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCV 870 (900)
Q Consensus 795 lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~--~~~G--~~f~~~ 870 (900)
|||+||||+||+||||+||+|||||||+|++++++++|+|+|+|+++|.... +++||+++++. ..+| ++|.++
T Consensus 784 lgi~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~ 860 (888)
T PRK09277 784 LGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVL 860 (888)
T ss_pred hCCcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999996333 47899988874 3566 789999
Q ss_pred ecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002610 871 IRFDTEVELAYFDHGGILQYVIRNLIN 897 (900)
Q Consensus 871 ~~~~t~~e~~~~~aGGiL~yv~~~~~~ 897 (900)
+++||+.|++||++|||||||+|++++
T Consensus 861 ~r~dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 861 CRIDTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred EecCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 999999999999999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.1e-259 Score=2246.09 Aligned_cols=834 Identities=45% Similarity=0.800 Sum_probs=794.1
Q ss_pred eeEEEeCC-CCCC---CCCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhH
Q 002610 22 FGKYYSLP-ALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPA 97 (900)
Q Consensus 22 ~~~~~~l~-~~~~---~~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a 97 (900)
.|+||+|. ++.. .++++|||||||||||+||||||..++++ +++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 69999996 6642 37899999999999999999999999998 9999999 23579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc-chhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCC
Q 002610 98 VVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP 176 (900)
Q Consensus 98 ~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~pp 176 (900)
++|||+|||+++++|+||++|||.+||+||||||||+|+++ +++|+.+|+.+||+||.|||+|||||+++|+|++|+||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcceeeeeecccceeeecCCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccC
Q 002610 177 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 256 (900)
Q Consensus 177 g~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~ 256 (900)
|+|||||||+||||+||++++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHH
Q 002610 257 DGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSM 336 (900)
Q Consensus 257 ~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~ 336 (900)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCcccccccc
Q 002610 337 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 416 (900)
Q Consensus 337 ~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 416 (900)
+|+|.|++++|++ +|++|+|+++++||||+|||+||+|++|||++||+|++..... .... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c--
Confidence 9999999999974 4678999999999999999999999999999999998753110 0000 0
Q ss_pred ceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHH
Q 002610 417 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 496 (900)
Q Consensus 417 ~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~ 496 (900)
...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCCC
Q 002610 497 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 576 (900)
Q Consensus 497 ~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~~ 576 (900)
++||+|++||||+||||+|++.++++++|.+++++.++|||+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCCC
Q 002610 577 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 656 (900)
Q Consensus 577 ~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~ 656 (900)
||||.|+||++|||+||||+.+||++++++.++|+||++.|++++.+++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999988876 788889999999999999999999988
Q ss_pred CCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhh
Q 002610 657 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 736 (900)
Q Consensus 657 ~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~ 736 (900)
+.++.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhh
Q 002610 737 LLN--G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 812 (900)
Q Consensus 737 l~~--~--~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~N 812 (900)
|++ | .+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+|
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N 774 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTN 774 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhh
Confidence 998 4 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHH
Q 002610 813 LVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGIL 888 (900)
Q Consensus 813 li~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aGGiL 888 (900)
|+|||||||+|.+++++++|+|+|+|+|+|. . +++||++++++. .+| .+|.+++++||+.|++||++||||
T Consensus 775 l~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL 849 (858)
T TIGR02333 775 LVGMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849 (858)
T ss_pred hhhcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHH
Confidence 9999999999999999999999999999983 2 468999888764 567 789999999999999999999999
Q ss_pred HHHHHHHhh
Q 002610 889 QYVIRNLIN 897 (900)
Q Consensus 889 ~yv~~~~~~ 897 (900)
|||+|++++
T Consensus 850 ~~v~~~~~~ 858 (858)
T TIGR02333 850 QRFAQDFLE 858 (858)
T ss_pred HHHHHHhhC
Confidence 999999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.1e-257 Score=2205.71 Aligned_cols=851 Identities=60% Similarity=1.014 Sum_probs=814.1
Q ss_pred ccceecCCCCceeEEEeCCCCCCC-CCCCCChhhHHHHhhhccccCccCccHHHHHHHHhhhcCCCCceeEeeccceeee
Q 002610 11 LKTLQRPDGGEFGKYYSLPALNDP-RIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLL 89 (900)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lp~~~rvlle~~~r~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~ 89 (900)
++++.+++. .|+||+|++++.. .+++||||+|||+||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 567887754 8999999999754 7999999999999999999998 899999999998766667799999999999
Q ss_pred ecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 002610 90 QDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFH 169 (900)
Q Consensus 90 qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~ 169 (900)
|||||+|+++|+|+||+++.++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCCcceeeeeecccceeeecCCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecCcEEEE
Q 002610 170 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 249 (900)
Q Consensus 170 ~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV 249 (900)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCC
Q 002610 250 KLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 329 (900)
Q Consensus 250 ~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr 329 (900)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCc
Q 002610 330 SDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIP 409 (900)
Q Consensus 330 ~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~ 409 (900)
++++++++|+|+++|+||++. +|++|+|+++|+||||+|+|+||||++|||+++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999864 57789999999999999999999999999999999999999876543211
Q ss_pred cccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHc
Q 002610 410 KEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNS 489 (900)
Q Consensus 410 ~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~ 489 (900)
+..+...|+ .+.||+|+||+|||||||||||+|+||++|||||+++|++++|||||+|+|||++|.+||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 011333444 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccc
Q 002610 490 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 569 (900)
Q Consensus 490 Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~ 569 (900)
||+++|+++||.+++|||||||||||+|+++++++|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccC
Q 002610 570 VNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649 (900)
Q Consensus 570 i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~ 649 (900)
+++|+++||+|.++||++|||+||||+.+||.+.+.+.+++++|.+.|.++|. |+.++++.+++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhcccccc
Q 002610 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFA 729 (900)
Q Consensus 650 pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~ 729 (900)
||||+++...+.+ |+++|+|+++|||||||||||||+|+++|||++||.++|+.+.|||||||||||||||+||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998776544 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhh
Q 002610 730 NIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIH 809 (900)
Q Consensus 730 n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh 809 (900)
|+|++|+|+++ +|++|+|+|+|+ |||+|++|+++|+|+|||||+|||+|||||||||++++|||+||||+||||||
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIH 772 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIH 772 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHH
Confidence 99999999998 999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhc
Q 002610 810 RSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 810 ~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~--~~G--~~f~~~~~~~t~~e~~~~~aG 885 (900)
|+||||||||||||++++++++|+++|.+.++|.+.+ .++|+.+++|+. .|| .++.+.++++|+.|++||++|
T Consensus 773 rSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 773 RSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HhhcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcC
Confidence 9999999999999999999999999999998887665 578888877763 466 678999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 002610 886 GILQYVIRNLIN 897 (900)
Q Consensus 886 GiL~yv~~~~~~ 897 (900)
|||+|+++++++
T Consensus 850 GiL~~v~~~~~~ 861 (861)
T COG1048 850 GILNYVKRDLLK 861 (861)
T ss_pred chHHHHHHHhhC
Confidence 999999998753
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=5.8e-179 Score=1570.29 Aligned_cols=697 Identities=29% Similarity=0.453 Sum_probs=598.6
Q ss_pred cHHHHHHHHhhhcCC-------------CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002610 60 KSKDVEKIIDWETTS-------------PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL 126 (900)
Q Consensus 60 ~~~~ie~il~~~~~~-------------~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l 126 (900)
.+|++||||+.|.+. ..+.+|.++|||||+||+||+|+++||++| |. + +|.+|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~-~---~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GL-P---QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC-C---CCCCCCeE
Confidence 579999999999753 234679999999999999999999999764 44 2 34456789
Q ss_pred EecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eE
Q 002610 127 VIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 205 (900)
Q Consensus 127 viDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tv 205 (900)
++||++|++.... .++..++.||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 457788999999999999999999 8999999999999999994 56786 69
Q ss_pred eecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEe
Q 002610 206 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFY 285 (900)
Q Consensus 206 vGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~ 285 (900)
|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHH-HHHHHHHHhhccccCCCCCCCCcccEEEE
Q 002610 286 GEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANKMFVDYSEPQSERVYSSYLE 364 (900)
Q Consensus 286 G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~-~~e~y~~~~~l~~~~~~~D~~a~Y~~~ie 364 (900)
||||++||+++|||||||++|+|||+||||+|++|++||+.+||++.... .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999875422 2333321 122 5789999999999
Q ss_pred EEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCC
Q 002610 365 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNT 444 (900)
Q Consensus 365 iDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~ 444 (900)
||||+|||+||+|++|||++||+|+++.+++ .|++ .+|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1221 14789999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhh
Q 002610 445 SNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAA 524 (900)
Q Consensus 445 s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~ 524 (900)
|++||+.||. ++|+|++ ++++|.||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~AA~-ilk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSRCAS-IVKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHHHHH-Hhhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 9999666555 5577764 566788999999999999999999999999999999999999999999987543 1
Q ss_pred hccCceEEEEeeccCCCCCCCCCC-CCCceEecChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHH
Q 002610 525 ITENDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHV 603 (900)
Q Consensus 525 i~~~~~~~~~vsS~NRNF~GR~g~-~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~ 603 (900)
+.+|+.+ ++|||+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .|++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 3457754 6899999999999954 5577999999999999999999999999999 69999999999 8999998875
Q ss_pred hhhccCchhhhhhcccccCCCcccccccCC--CCCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCc
Q 002610 604 VQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITT 681 (900)
Q Consensus 604 ~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itT 681 (900)
+| ...+..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||||||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcCh
Confidence 22 2345667766553 56789999999999999999643 45789999999999999999
Q ss_pred CcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcC--CCCCC--ceeecCCCccccc
Q 002610 682 DHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP--KTIHIPTGEKLSV 757 (900)
Q Consensus 682 DhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~--~~~g~--~t~~~p~g~~~~i 757 (900)
||||||| .||.++ |+|.|++ .|.|.. +.+++ .|.+.|+|+.+++
T Consensus 563 DHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 9999998 589874 4555665 555542 22344 6777889999999
Q ss_pred chHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCC
Q 002610 758 FDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGH 837 (900)
Q Consensus 758 ~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~ 837 (900)
+++|++|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .|
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~-~g- 688 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PG- 688 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC-CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888888765 34
Q ss_pred eEEEE-eCCCCcccCCC---CceEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002610 838 ERYTI-DLPSSVSEIRP---GQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYV 891 (900)
Q Consensus 838 e~~~I-dl~~~~~~~~~---~~~v~v~--~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv 891 (900)
+.+.+ ++.+ +.| ++.+++. ..+| ++|.+++++ |+.|++||++||+|||+
T Consensus 689 d~~~~~~l~~----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 689 DEVATLNLYE----MLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred CEEEEcChhh----ccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 55554 3443 333 5667643 3445 788888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=3e-164 Score=1438.60 Aligned_cols=637 Identities=33% Similarity=0.522 Sum_probs=557.1
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCCC
Q 002610 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL-VIDHSVQVD 135 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~l-viDH~v~~~ 135 (900)
.+|++||||+.|.... .+.+|.++||||++||+||++++++|++| |.++ ..+| ..+ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCC
Confidence 3689999999997532 56689999999999999999999998765 7665 3344 344 899988865
Q ss_pred CccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcc
Q 002610 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTM 214 (900)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~ 214 (900)
. .||.++|+|++|++++| |++|+|||+|||||+++|+|+ .| +++|||||||||
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~~ 124 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFA----------FPGKTLLGSDSHTPT 124 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhcc----------CCCCEEEeCCCCcCc
Confidence 3 58999999999999999 899999999999999999655 45 689999999999
Q ss_pred cCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccCh
Q 002610 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (900)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~ 294 (900)
+||||+||||||++|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||+
T Consensus 125 ~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~ 204 (646)
T PRK07229 125 AGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSV 204 (646)
T ss_pred CCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCccccc
Q 002610 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCV 374 (900)
Q Consensus 295 ~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~v 374 (900)
++|||||||++|+|||+||||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+|
T Consensus 205 ~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDLs~leP~v 269 (646)
T PRK07229 205 PERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L-----LADPDAEYDEVIEIDLSELEPLI 269 (646)
T ss_pred HHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c-----cCCCCCCeeEEEEEEccceeeee
Confidence 99999999999999999999999999999999998765321 1 47899999999999999999999
Q ss_pred ccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHH
Q 002610 375 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAA 454 (900)
Q Consensus 375 AgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 454 (900)
|+|++|||++||+|+++. +|++||||||||||++|+++||+
T Consensus 270 a~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~ 310 (646)
T PRK07229 270 AGPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAAS 310 (646)
T ss_pred ecCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHH
Confidence 999999999999998631 37799999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEE
Q 002610 455 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 534 (900)
Q Consensus 455 lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 534 (900)
+| +|+||+||||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. +|++ +
T Consensus 311 iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~~~~---~ 373 (646)
T PRK07229 311 IL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------TGNV---S 373 (646)
T ss_pred Hh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------CCcE---E
Confidence 99 899999999999999999999999999999999999999999999999998543 22 3554 7
Q ss_pred eeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhh
Q 002610 535 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFK 614 (900)
Q Consensus 535 vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~ 614 (900)
|||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|.
T Consensus 374 vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~ 439 (646)
T PRK07229 374 LRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGII 439 (646)
T ss_pred EEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhc
Confidence 9999999999999988899999999999999999999 999999987 9999997 7882 123444443
Q ss_pred hhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCC
Q 002610 615 ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDS 694 (900)
Q Consensus 615 ~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~s 694 (900)
+ .++.|+.++++ .++||+++|+|+++ .++.++|+|+++|||||||||||+|+
T Consensus 440 ~-------~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~----- 491 (646)
T PRK07229 440 A-------PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA----- 491 (646)
T ss_pred C-------CCccccccccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc-----
Confidence 2 34567666554 34788888887543 47899999999999999999999974
Q ss_pred hHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEE
Q 002610 695 PAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVIL 774 (900)
Q Consensus 695 pa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiV 774 (900)
+||+ +|+|+|.|.+++|.+.+ |.+ +.+++..+ ++|||
T Consensus 492 ---~~l~--------------~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiV 528 (646)
T PRK07229 492 ---KWLP--------------YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVV 528 (646)
T ss_pred ---chhc--------------cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEE
Confidence 4776 37899999999998642 322 23566554 79999
Q ss_pred eCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEE-eCCCCcccCCC
Q 002610 775 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTI-DLPSSVSEIRP 853 (900)
Q Consensus 775 AG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~I-dl~~~~~~~~~ 853 (900)
||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+|.++| ++.+ +.+
T Consensus 529 aG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~ 602 (646)
T PRK07229 529 GGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLP 602 (646)
T ss_pred ecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCC
Confidence 9999999999999999999999999999999999999999999999999887778765 45788888 6653 355
Q ss_pred CceEEEEc-CCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002610 854 GQDVRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 896 (900)
Q Consensus 854 ~~~v~v~~-~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 896 (900)
+.+|+++. .+|++|.++.++ ++.|++|+++||+|||+++++.
T Consensus 603 ~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 603 GGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred CCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 66666643 456899998887 9999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=3.5e-162 Score=1418.43 Aligned_cols=642 Identities=32% Similarity=0.483 Sum_probs=550.7
Q ss_pred HHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002610 62 KDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (900)
Q Consensus 62 ~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (900)
|++||||+.|.... .+.+|.++||||++||+||++++++|++| |. + ++.|. .+.+++||++|...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~-~-~v~~~-~~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EM-D-EVKTE-LAAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CC-C-ccCCC-CeEEECCCCCCCCC--
Confidence 46899999996642 56689999999999999999999998766 33 2 34454 35789999988752
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002610 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (900)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (900)
.||.|+|+|++|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 16789999999999998 568999999999999999555 46 689999999999999
Q ss_pred cceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhh
Q 002610 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (900)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR 297 (900)
||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccC
Q 002610 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (900)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP 377 (900)
||||||++|+|||+||||+|++|++||+.++|.+++.. ..+|++|.|+++++||||+|||+||+|
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~---------------l~~D~~a~Y~~~i~iDls~leP~va~P 269 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD---------------LLADADAEYADEIEIDLSDLEPLIAEP 269 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee---------------ccCCCCCcEEEEEEEEccceeeeeeCC
Confidence 99999999999999999999999999999998664321 157999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002610 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 457 (900)
Q Consensus 378 ~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 457 (900)
++|||++||+|++. . +|+++|||||||||++||++||++|
T Consensus 270 ~~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il- 309 (658)
T TIGR01342 270 HMPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL- 309 (658)
T ss_pred CCCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh-
Confidence 99999999999763 1 3568999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002610 458 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 537 (900)
Q Consensus 458 k~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 537 (900)
+|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+. +++ ++|||
T Consensus 310 -----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~---~~vst 373 (658)
T TIGR01342 310 -----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDG---VSLRS 373 (658)
T ss_pred -----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCc---EEEEc
Confidence 89999999999999999999999999999999999999999999999999965432 244 37999
Q ss_pred cCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCCCCCcccCCCCceeecccC-CCChHHHHHHhhhccCchhhhhh
Q 002610 538 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKAT 616 (900)
Q Consensus 538 ~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~di-wP~~~ei~~~~~~~~~~~~f~~~ 616 (900)
+||||+||||+..+.+|||||++||||||+|+| +|+.. ++. .+| |+ ||+.++ |+.|...
T Consensus 374 ~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~ 433 (658)
T TIGR01342 374 FNRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGG 433 (658)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhccc
Confidence 999999999998888999999999999999999 45542 322 244 45 886652 5556555
Q ss_pred cccccCCCcccccccC---CCCCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCC
Q 002610 617 YEAITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKD 693 (900)
Q Consensus 617 y~~i~~~~~~w~~l~~---~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~ 693 (900)
|...+ |+.++. ++.+++. |+||++||+|++++ .+|++ |+++++|||||||||+|||+
T Consensus 434 ~~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~---- 493 (658)
T TIGR01342 434 YDAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGA---- 493 (658)
T ss_pred ccccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCc----
Confidence 65443 766654 3344553 89999999998775 35777 99999999999999999975
Q ss_pred ChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEE
Q 002610 694 SPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVI 773 (900)
Q Consensus 694 spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~Ii 773 (900)
.||.+ |+|.+.+.+.+|...+ .+ +.+++++|++.+.++||
T Consensus 494 ----~~l~~--------------r~~~~~l~~~~~~~~~-------------------p~---f~~~~~~~~~~~~~~ii 533 (658)
T TIGR01342 494 ----DILKF--------------RSNIEAISEFTLHRID-------------------DE---FAERAKAADEKGKAGII 533 (658)
T ss_pred ----ccccc--------------CCCHHHHhhheeeCCC-------------------ch---HHHHhhcccccCCceEE
Confidence 25532 7788888888885421 11 23677899999999999
Q ss_pred EeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEe--CCCCcccC
Q 002610 774 LAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID--LPSSVSEI 851 (900)
Q Consensus 774 VAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Id--l~~~~~~~ 851 (900)
|||+|||||||||||||++++|||+||||+||+||||+||+|+|||||+|+++++++.+.. +++++|+ +.+ .+
T Consensus 534 VaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~ 608 (658)
T TIGR01342 534 IAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---AL 608 (658)
T ss_pred EcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hc
Confidence 9999999999999999999999999999999999999999999999999998888887654 5677887 554 46
Q ss_pred CCCceEEEE-cCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002610 852 RPGQDVRVV-TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 896 (900)
Q Consensus 852 ~~~~~v~v~-~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 896 (900)
+||++..+. ..+|.++.+...+ ++.|++|+++||||||++++..
T Consensus 609 ~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~ 653 (658)
T TIGR01342 609 ADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHR 653 (658)
T ss_pred CCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhc
Confidence 788655443 3466666666544 8999999999999999999764
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.6e-144 Score=1267.07 Aligned_cols=660 Identities=23% Similarity=0.345 Sum_probs=504.9
Q ss_pred HHHHHHHHhhhc-----CC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002610 61 SKDVEKIIDWET-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQ 133 (900)
Q Consensus 61 ~~~ie~il~~~~-----~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~ 133 (900)
++++||||+.|. +. .++.+|.++||++|+||.|+++++ +|. ++|. +...+|.. +++++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~-~~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGA-SKIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCC-CccCCCCC-EEEEcCCCCC
Confidence 578999999996 32 256779999999999999999864 343 3565 34667753 6789999999
Q ss_pred CCCccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCC
Q 002610 134 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 212 (900)
Q Consensus 134 ~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT 212 (900)
.... .++..++..++|+| +| +++|+|||+|||||+++| +|+++|+ ++|||||||
T Consensus 72 ~~~~--~~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD--KNLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH--HHHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8753 22333333443333 33 678899999999999999 8999996 579999999
Q ss_pred cccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEec--Cccc
Q 002610 213 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYG--EGMS 290 (900)
Q Consensus 213 ~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G--~gv~ 290 (900)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcc--------hHHHHHHHHH---HhhccccCCCCCCCCcc
Q 002610 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD--------TVSMIESYLR---ANKMFVDYSEPQSERVY 359 (900)
Q Consensus 291 ~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~--------~~~~~e~y~~---~~~l~~~~~~~D~~a~Y 359 (900)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... ..+..++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999876411 0011222321 111222 3368999999
Q ss_pred cEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEee
Q 002610 360 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 439 (900)
Q Consensus 360 ~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~Ig 439 (900)
+++++||||+|+|+||+|++|++++|++++... + . +|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~------------------~-------~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D------------------I-------KIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C------------------c-------eeeeEEEe
Confidence 999999999999999999999999999987420 0 0 36799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 002610 440 SCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 516 (900)
Q Consensus 440 SCTN~s~~dl~~aA~lLak~A~~~G---~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~ 516 (900)
||||+|++||+.||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888763 7999999999999999999999999999999999999999999999999988
Q ss_pred CchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCC
Q 002610 517 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPS 596 (900)
Q Consensus 517 l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~ 596 (900)
++++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +=||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----ccccc
Confidence 7544 565 78999999999999888899999999999999999994 5553320 0 01221
Q ss_pred h--H---HHHHHhhhccCchhhhhhcccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCCCCCCCCCCCcc
Q 002610 597 S--E---EVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDPKSTYIHE--PPYFKDMTMSPPGPHGV 666 (900)
Q Consensus 597 ~--~---ei~~~~~~~~~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~w~~~styi~~--pp~f~~~~~~~~~~~~i 666 (900)
. . .+.......++.+++...-..+ ....+.-.+...+. +.-+.+ .|.++.+ .+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-------~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILEGF-------PEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCCCC-------Cce
Confidence 0 0 0000001112333332111000 00001001111111 111111 2222222 233
Q ss_pred ccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCce
Q 002610 667 KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT 746 (900)
Q Consensus 667 ~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t 746 (900)
...+++++.|||||||||+|+ +||....++ .|.|.+..|.+.+
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~~-------------~~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPG----------KYTYQDDVP-------------KEKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccch----------hhcccCCCC-------------HHHHHHhhccCCC--------------
Confidence 445899999999999999998 687421122 3456777776543
Q ss_pred eecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCc
Q 002610 747 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 826 (900)
Q Consensus 747 ~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~ 826 (900)
| +.+.+++. +.|||||+|||||||||||+++++++||+||||+||+|||+||++|+|+|||+|++.
T Consensus 574 ---p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~~ 639 (712)
T TIGR00139 574 ---A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEIPAL 639 (712)
T ss_pred ---c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEchhH
Confidence 1 12244543 479999999999999999999999999999999999999999999999999999852
Q ss_pred cchhhcc---------CC--CCeEEEEeCCCCcccCCCCceEEEEcCC----C--EEEEEEecCCCHHHHHHHHhcCHHH
Q 002610 827 EDAETHG---------LT--GHERYTIDLPSSVSEIRPGQDVRVVTDS----G--KSFTCVIRFDTEVELAYFDHGGILQ 889 (900)
Q Consensus 827 ~~~~~l~---------l~--g~e~~~Idl~~~~~~~~~~~~v~v~~~~----G--~~f~~~~~~~t~~e~~~~~aGGiL~ 889 (900)
.+.+. ++ .+++++||+.. ..|++ ..+ + ++|++.. .++..++++++|||++
T Consensus 640 --~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~--------g~i~~-t~g~~~~~~~~~~~~~~--~p~~~~eii~~GGl~~ 706 (712)
T TIGR00139 640 --IKKLREKFGGADKELTRRTGWFLKWDVAD--------AKIEV-QEGSLDGGPILEHKVGE--LGKNLQEIIAKGGLEG 706 (712)
T ss_pred --HHHHHhhhcccccccccCCCCEEEEEccC--------CEEEE-CCCcccccceeEEEcCC--CCHHHHHHHHcCCHHH
Confidence 22222 12 46778898875 24554 222 2 2555544 4788999999999999
Q ss_pred HHHHHH
Q 002610 890 YVIRNL 895 (900)
Q Consensus 890 yv~~~~ 895 (900)
|+++++
T Consensus 707 ~~k~~~ 712 (712)
T TIGR00139 707 WVKNAI 712 (712)
T ss_pred HHHhcC
Confidence 999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=6.3e-142 Score=1250.69 Aligned_cols=682 Identities=22% Similarity=0.282 Sum_probs=513.7
Q ss_pred cHHHHHHHHhhhcCCCCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002610 60 KSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (900)
++|++||||+.|.....+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||+++....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 46899999999977666667999999999999999988876644 4764 45 4 689999999999875443
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCcc
Q 002610 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 218 (900)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~gal 218 (900)
.++ +.|.|++...++| ++.|+|||+|||||+++|+| +.| +++|||||||| +|||
T Consensus 103 ~n~-------------~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~----------a~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 INE-------------DDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMM----------AGGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred ccH-------------HHHHHHHHHHHHc-CCcEECCCCCeECcCchhhc----------cCCCcEEEeeCcCcc-cchh
Confidence 332 3344444444444 45789999999999999954 456 58999999996 8999
Q ss_pred ceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCc-cceEEEEecCcccccChhhh
Q 002610 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV-VGMFVEFYGEGMSELSLADR 297 (900)
Q Consensus 219 G~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~-~gk~VEf~G~gv~~LS~~dR 297 (900)
|+|||||||+|++.+|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccC
Q 002610 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (900)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP 377 (900)
||||||++|+|||+||||+|++|++||+.++|.+.+.. ..+|++|.|+++++||||+|+|+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~---------------l~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE---------------LNPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee---------------ccCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999998764311 157999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCC--ceEEEEeecCCCCCChHHHHHHHH
Q 002610 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG--DVVIAAITSCTNTSNPSVMLGAAL 455 (900)
Q Consensus 378 ~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g--~V~~a~IgSCTN~s~~dl~~aA~l 455 (900)
++|+|++||+|+.+++.++++.. ..++..+ ......++.. ..|.++ +|+|||||||||||++||+.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~---~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL---DKIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc---ccccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998887766532 1111100 0000111111 112212 689999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEE
Q 002610 456 VAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 534 (900)
Q Consensus 456 Lak~A~~~G~kv~-p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 534 (900)
| +|++|+ ++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++. +. ++++ |
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---E
Confidence 9 999998 579999999999999999999999999999999999999999998644 32 3554 7
Q ss_pred eeccCCCCCCCCCCCCCc-----eEecChHHHHHHHhc-cccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhcc
Q 002610 535 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSV 608 (900)
Q Consensus 535 vsS~NRNF~GR~g~~~~~-----~yLaSP~lVaA~Ala-G~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~ 608 (900)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +.+ .+.+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---Cccc
Confidence 899999999999998776 677778989999998 6995 5543321 11 111 1234
Q ss_pred Cchhhh-hhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCC-cCcccC
Q 002610 609 LPDMFK-ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISP 686 (900)
Q Consensus 609 ~~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~it-TDhIsP 686 (900)
+.++|. ..|...... ..+.-+..-|.|.+++... ++.+-...+|+.++||+|| ||||||
T Consensus 497 ~~~~y~~~~~~~~~~~------------------~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGKG------------------ATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCCC------------------CCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCcccccccc
Confidence 444443 223211111 1112222233333332221 2233445689999999997 999999
Q ss_pred CCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCC--CceeecCCCcccccchHHHHH
Q 002610 687 AGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG--PKTIHIPTGEKLSVFDAAMRY 764 (900)
Q Consensus 687 aG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g--~~t~~~p~g~~~~i~~aa~~y 764 (900)
|| +||.+ |||-+-+...+|... .|.+...... ..-....+|. +.+.|+.|
T Consensus 558 aG---------~~l~~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~ 609 (751)
T PRK11413 558 SG---------ETSSY--------------RSNPLGLAEFTLSRR--DPGYVGRSKAVAELENQRLAGN---VSELTEVF 609 (751)
T ss_pred CC---------Ccccc--------------ccCHHHHhhhhcccc--ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHH
Confidence 98 46664 677777777777432 3333210000 0000001221 12334444
Q ss_pred --------------HhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhh-hhhhcccCcccccccCCccch
Q 002610 765 --------------KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDA 829 (900)
Q Consensus 765 --------------~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarI-h~~Nli~~GiLpL~f~~~~~~ 829 (900)
++.|.++||++ .||||||||||||+++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~-- 686 (751)
T PRK11413 610 ARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP-- 686 (751)
T ss_pred HhhhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh--
Confidence 55666655555 99999999999999999999999999999999 7779999999999998642
Q ss_pred hhccCCCCeEEEEeCCCCcccCC-CCceE--EEEcCCC--EEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002610 830 ETHGLTGHERYTIDLPSSVSEIR-PGQDV--RVVTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIR 893 (900)
Q Consensus 830 ~~l~l~g~e~~~Idl~~~~~~~~-~~~~v--~v~~~~G--~~f~~~~~~~t~~e~~~~~aGGiL~yv~~ 893 (900)
.+..++.++|+.... .+. +++.+ .+...+| +.+.+.+.-.++.|++|+++||+|||+++
T Consensus 687 ---~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 687 ---TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred ---hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 356678889885421 232 22233 3333343 45556542238999999999999999976
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=8e-136 Score=1137.24 Aligned_cols=702 Identities=31% Similarity=0.482 Sum_probs=579.4
Q ss_pred cHHHHHHHHhhhcCCC-------CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCC
Q 002610 60 KSKDVEKIIDWETTSP-------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 132 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~-------~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v 132 (900)
..+..|||+..+.... .+..+.++||||+|||.|..|++++|.. .|.. ++ .+|..+++||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~--kv--avPstIhCdhli 126 (778)
T KOG0453|consen 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-------SGLK--KV--AVPSTIHCDHLI 126 (778)
T ss_pred CchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-------cCcc--cc--cCCceEEeccee
Confidence 4678899988764321 2346899999999999999999999853 3554 33 356789999999
Q ss_pred CCCCccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCC
Q 002610 133 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 211 (900)
Q Consensus 133 ~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSH 211 (900)
.+...+..| +.+.-+.|+|.|.||..+.++| |+.||+||+||+||++|| + |+||+ ++||||||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSH 190 (778)
T KOG0453|consen 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSH 190 (778)
T ss_pred eeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCC
Confidence 887766554 4556779999999999998876 799999999999999999 4 67896 68999999
Q ss_pred CcccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccc
Q 002610 212 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 291 (900)
Q Consensus 212 T~~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~ 291 (900)
|+++||||+|++||||+||+.+|+++||.++.|+++||+|||+|+.|+++|||||++.+.|..+|++|++||||||||.+
T Consensus 191 Tpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~s 270 (778)
T KOG0453|consen 191 TPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNS 270 (778)
T ss_pred CCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccce
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcc
Q 002610 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV 371 (900)
Q Consensus 292 LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~ve 371 (900)
||++.|+|||||++|.|||+|+||.|+.+++||+.|||.+. .+..++|.++ + ..+|++|.|+++|+||||+|+
T Consensus 271 lSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~----l~AD~~a~Ydk~ieIdLstL~ 343 (778)
T KOG0453|consen 271 LSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--I----LAADKGAHYDKIIEIDLSTLE 343 (778)
T ss_pred eccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--c----ccCCCCCCcceEEEEEhhhcc
Confidence 99999999999999999999999999999999999999974 2334455544 2 368999999999999999999
Q ss_pred cccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHH
Q 002610 372 PCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVML 451 (900)
Q Consensus 372 P~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~ 451 (900)
|+|.||++|+-..|++++.+..+ -+||+. +|..++||||||+||+|+-.
T Consensus 344 P~vnGPfTpdl~~pvskl~e~~~--------------------------kn~wp~-----~i~~gligSCTNSsyeDm~r 392 (778)
T KOG0453|consen 344 PHVNGPFTPDLSTPVSKLGENSE--------------------------KNGWPI-----KIKVGLIGSCTNSSYEDMSR 392 (778)
T ss_pred cccCCCCCccccChHHHHhHHhh--------------------------hcCCce-----eeeeeEEEeecCccHHHHHH
Confidence 99999999999999999875311 145555 34578999999999999888
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceE
Q 002610 452 GAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIV 531 (900)
Q Consensus 452 aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~ 531 (900)
+|.++ ++|..+|+ +|.|-+.|+|||.+|...++|.|+++.|+++|+.+.+.+||||||++..-+ |++||.
T Consensus 393 aa~iv-~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~- 462 (778)
T KOG0453|consen 393 AADIV-KQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEK- 462 (778)
T ss_pred HHHHH-HHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCc-
Confidence 87765 88887776 555999999999999999999999999999999999999999999986521 445665
Q ss_pred EEEeeccCCCCCCCCCCCC-CceEecChHHHHHHHhccccccCCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCc
Q 002610 532 AAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLP 610 (900)
Q Consensus 532 ~~~vsS~NRNF~GR~g~~~-~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~ 610 (900)
.+.|+|.||||.||++... ...||+||++|+|+||+|++.||+++|.+ ...||+.+.|+. |..+|+.+ +.++|
T Consensus 463 ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~ 536 (778)
T KOG0453|consen 463 NTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDP 536 (778)
T ss_pred CceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCC
Confidence 2458999999999998655 45799999999999999999999999998 678999999986 77777644 33443
Q ss_pred hhhhhhcccccCCCcccccccCCC-CCccccCCCCccccCCCCCCCCCCCCCCCCccccceEEeecCCCCCcCcccCCCC
Q 002610 611 DMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGS 689 (900)
Q Consensus 611 ~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~ 689 (900)
.. ..|+. -+.+. ..-..-|++|..++....|+. +.-+|+++..+|+++..+|||||||-||
T Consensus 537 g~--~ty~a----------p~~~~~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaG- 598 (778)
T KOG0453|consen 537 GQ--DTYQA----------PPSSSSVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAG- 598 (778)
T ss_pred Cc--ccccC----------CCCCCCcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCC-
Confidence 21 22322 11111 124566889988887777753 4557899999999999999999999998
Q ss_pred CCCCChHhhHHHHcCCCCcCCCcc--ccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhc
Q 002610 690 IHKDSPAAKYLMERGVDRRDFNSY--GSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 767 (900)
Q Consensus 690 i~~~spa~~~L~~~g~~~~~fn~y--gsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~ 767 (900)
.||+++|+...-.|.+ |+ =|-|-|- .| .-.+..+||.+.+.+.|+.||+.
T Consensus 599 --------pwlkY~Ghl~nisnn~~iga--in~En~e---------~n---------~~~n~~~ge~~~vp~~~~~yk~~ 650 (778)
T KOG0453|consen 599 --------PWLKYRGHLENISNNDLIGA--INKENGE---------AN---------CVKNYLTGEFGTVPDTARDYKKH 650 (778)
T ss_pred --------cceeccchhhhcccchhhhh--cchhhhh---------hh---------hhhhccccccCCcCchhhhHHhc
Confidence 5999988654443322 11 1112111 11 22334578888999999999999
Q ss_pred CCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCC
Q 002610 768 GHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSS 847 (900)
Q Consensus 768 g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~ 847 (900)
|++||+|++.|||.||||||||..|+.||+++||.+||+|||.+||+++|+|||+|.+..+|+++. ..+.+++. +
T Consensus 651 g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~ 725 (778)
T KOG0453|consen 651 GIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---G 725 (778)
T ss_pred CceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---h
Confidence 999999999999999999999999999999999999999999999999999999999999999864 33334433 2
Q ss_pred cccCCCCceEEEE--cCCCEEEEEEecCC-CHHHHHHHHhcCHHHHHHH
Q 002610 848 VSEIRPGQDVRVV--TDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 893 (900)
Q Consensus 848 ~~~~~~~~~v~v~--~~~G~~f~~~~~~~-t~~e~~~~~aGGiL~yv~~ 893 (900)
+.++.||.++++. ..+|++++.++.+. +..|++||++|..|+++++
T Consensus 726 L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 726 LTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred hhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 3366788877665 45788787777654 7899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.8e-130 Score=1081.80 Aligned_cols=400 Identities=76% Similarity=1.212 Sum_probs=388.8
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002610 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (900)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (900)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..++..+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccccceecCCCCcceeeeeecccceeeec----CCCcccCCeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEe
Q 002610 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 241 (900)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~----~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~ 241 (900)
++|.|++++|||+||||||++|+||+++++ ++|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHH
Q 002610 242 VLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTL 321 (900)
Q Consensus 242 ~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~ 321 (900)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccc
Q 002610 322 QYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRV 401 (900)
Q Consensus 322 ~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~ 401 (900)
+++++||||+|||+||+|++|+|++||..
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~~------------- 265 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLHG------------- 265 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcCC-------------
Confidence 55799999999999999999999999821
Q ss_pred cCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHH
Q 002610 402 GFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGV 481 (900)
Q Consensus 402 ~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~ 481 (900)
+|++||||||||||++|++.||++|+|||++||+||+||||++|+|||++
T Consensus 266 ------------------------------~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 266 ------------------------------SVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred ------------------------------cEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHH
Q 002610 482 VTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 561 (900)
Q Consensus 482 V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lV 561 (900)
|+++|+++|++++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+.+|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999998888889999998889999999999999999999999999999
Q ss_pred HHHHhcccc
Q 002610 562 VAYALAGSV 570 (900)
Q Consensus 562 aA~AlaG~i 570 (900)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=3e-121 Score=1036.69 Aligned_cols=453 Identities=25% Similarity=0.366 Sum_probs=397.3
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002610 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 137 (900)
.+|++|||++.|.... .+..+.++|||+++||+|+++++. +||+ +|. ..++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLRQ----AGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHHH----cCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3689999999997643 466688999999999999999974 3443 452 344554 689999999999763
Q ss_pred -cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667888999999999999875 2 246689999999999999 899999 6899999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 375 (900)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++++|+.. .+|++|.|+++++||||+|+|+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998877653 37899999999754 689999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHH
Q 002610 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 453 (900)
Q Consensus 376 gP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 453 (900)
+|++|+|++||+|+.+++....+.. ++.....+++|++... .+.+++|++||||||||||++||+.||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876654432210 1111122334444332 366779999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEE
Q 002610 454 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 533 (900)
Q Consensus 454 ~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 533 (900)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 999 9999999999999999999999999999999999999999999999999999888654 554
Q ss_pred EeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 534 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 534 ~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
++||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 6799999999999985 467999999999999999994
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=6.7e-121 Score=1035.14 Aligned_cols=453 Identities=28% Similarity=0.396 Sum_probs=401.8
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002610 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (900)
.+|++|||++.|.... .+.+|.++|||+++||+|+++++.+|++| |. ..+||..+ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999997642 33489999999999999999999998653 42 47788875 58999999999732
Q ss_pred ---chhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCcc
Q 002610 139 ---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 214 (900)
Q Consensus 139 ---~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~ 214 (900)
..+....|+.+++++|.++|.+ + .+++.+||+|||||+++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------R--LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------e--eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3446678888999999998875 1 245678999999999999 8999997 69999999999
Q ss_pred cCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccCh
Q 002610 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (900)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~ 294 (900)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCccccc
Q 002610 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCV 374 (900)
Q Consensus 295 ~dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~v 374 (900)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.|+++.|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998754 4799999999754 68999999999999999999999
Q ss_pred ccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCccc--ccCCceEEEEeecCCCCCChHHHHH
Q 002610 375 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ--LRHGDVVIAAITSCTNTSNPSVMLG 452 (900)
Q Consensus 375 AgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~--l~~g~V~~a~IgSCTN~s~~dl~~a 452 (900)
|+|++|+|++||+|+.+++.++++.. ++......++|++.... +.+.+|++||||||||||+|||+.|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887655421 11111234455554332 5667999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEE
Q 002610 453 AALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVA 532 (900)
Q Consensus 453 A~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~ 532 (900)
|++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|++++++++ ||+
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999887544 565
Q ss_pred EEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 533 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 533 ~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
+|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 -~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 -CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred -EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 7899999999999995 456999999999999999994
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=3.8e-120 Score=1029.07 Aligned_cols=453 Identities=26% Similarity=0.358 Sum_probs=399.6
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002610 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (900)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~- 137 (900)
.++++|||++.|.... .+..|.++|||+++||.|+++++..| + ++|. +.++|. ++.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~----~~g~--~v~~p~-~~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL---R----LAGR--KVRRPD-LTFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH---H----HcCC--CccCCC-CeEEEcCCCCCCCccc
Confidence 3689999999997643 55678899999999999999998544 3 3454 366776 467899999999975
Q ss_pred -cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
+..++...|+.+++++|.+||.|. .+++.+|++|||||+++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 566777889999999999999872 245578999999999999 899999 6899999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 375 (900)
+|+|||||++|+|||+||||+|++|++||+.+++.+ .+++|.+++++|+.. .+|++|+|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999654433 478899999999764 689999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHH
Q 002610 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 453 (900)
Q Consensus 376 gP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 453 (900)
+|++|+|++||+|+.+++.++++.. ++.......+|++... .+.+++|++||||||||||++|+++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPV----------KRASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 9999999999999999888766543 1111122344544321 266789999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEE
Q 002610 454 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 533 (900)
Q Consensus 454 ~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 533 (900)
++| ||+||+||||++|+|||++|++||+++|++++|.++||.|.+|||++|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999986543 35776
Q ss_pred EeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 534 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 534 ~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
+|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 78999999999999665 48999999999999999994
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=4.3e-121 Score=1039.72 Aligned_cols=457 Identities=39% Similarity=0.615 Sum_probs=368.7
Q ss_pred HHHHHHHhhhcCC----CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002610 62 KDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (900)
Q Consensus 62 ~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (900)
|+.|||++.|... ..+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 5789999998653 23457999999999999999999999987743 2345543 78999999999875
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCcccC
Q 002610 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMID 216 (900)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~g 216 (900)
+.. |+..++.+|+++|+|++|.++.|....|.|++.||||||++| +|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 778889999999999999998885444444445999999999 8899995 7999999999999
Q ss_pred ccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhh
Q 002610 217 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLAD 296 (900)
Q Consensus 217 alG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~d 296 (900)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCccccccc
Q 002610 297 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSG 376 (900)
Q Consensus 297 R~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAg 376 (900)
|||||||++|+||++||||+|++|++||+.++|+++..++.++|.+.+.|| +|++|.|+++++||||+|+|+||+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va~ 291 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVAG 291 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE-
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCcccccccc
Confidence 999999999999999999999999999999999988777788888878776 788999999999999999999999
Q ss_pred CCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCC--cccccCCceEEEEeecCCCCCChHHHHHHH
Q 002610 377 PKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT--PAQLRHGDVVIAAITSCTNTSNPSVMLGAA 454 (900)
Q Consensus 377 P~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 454 (900)
|++|+|++||+|+.+++.++.+.. + +.....+++|++. ...+.+++|++||||||||||+||+++||+
T Consensus 292 P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~ 361 (465)
T PF00330_consen 292 PHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAG 361 (465)
T ss_dssp SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHH
T ss_pred CCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHH
Confidence 999999999999999988665421 1 1112234556543 357888999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhcc-CceEEE
Q 002610 455 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVAA 533 (900)
Q Consensus 455 lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~-~~~~~~ 533 (900)
+|+++|+ +||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ ++ +
T Consensus 362 il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~---~ 430 (465)
T PF00330_consen 362 ILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGE---V 430 (465)
T ss_dssp HHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTE---E
T ss_pred Hhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccc---e
Confidence 9987776 799999999999999999999999999999999999999999999999995 2211 222 45 4
Q ss_pred EeeccCCCCCCCCCCCCCceEecChHHHHHHHhcc
Q 002610 534 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 568 (900)
Q Consensus 534 ~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG 568 (900)
+|||+||||+||||+..+.+|||||++||||||+|
T Consensus 431 ~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 89999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.1e-118 Score=998.37 Aligned_cols=409 Identities=32% Similarity=0.516 Sum_probs=363.9
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002610 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (900)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (900)
|||+||+||++++++|++| |. ++.++| .++++||++|+++++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 53 445544 488999999998776544 4567889999999999999
Q ss_pred cccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecC
Q 002610 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (900)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (900)
++| |++|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|+++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999993 67886 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHH
Q 002610 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (900)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL 324 (900)
|+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCC
Q 002610 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (900)
Q Consensus 325 ~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~ 404 (900)
+.++|+++ .+++++|. ++.+| +|++|.|+++++||||+|||+||+|++|+|++||+|+.+.+..
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999865 67778886 33444 7889999999999999999999999999999999999864321
Q ss_pred CccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002610 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484 (900)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~ 484 (900)
.|++ -+|++||||||||||++||..|| .++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 15789999999999999965555 66799999999998 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CchHHHhhhccCceEEEEeeccCCCCCCCC-CCCCCceEecChHHHH
Q 002610 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVV 562 (900)
Q Consensus 485 ~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~lVa 562 (900)
||+++||+++|.++||.|.+||||+|+|++++ ..+ +++.. ++|||+||||+||| |.....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~~-------~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIK-------KGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCcccC-------CCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999975 222 23321 47899999999999 4445679999999999
Q ss_pred HHHhcccc
Q 002610 563 AYALAGSV 570 (900)
Q Consensus 563 A~AlaG~i 570 (900)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=1e-114 Score=963.06 Aligned_cols=380 Identities=28% Similarity=0.414 Sum_probs=342.2
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002610 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (900)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (900)
|+++||+|+++++. +||+...+.+.||++ +++++||++|++ +....|+.+++.+|.++|.+
T Consensus 1 ~~~~hD~t~p~a~~---~~~~~g~~~v~dp~k------~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~gi----- 61 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLREAGREKVWDPEK------IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFGI----- 61 (382)
T ss_pred CEEEEeccHHHHHH---HHHHhCCcccCCCCc------eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhCc-----
Confidence 68999999999974 445433333444444 589999999998 34456667777777776542
Q ss_pred cccccceecCC-CCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeec
Q 002610 166 NAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (900)
Q Consensus 166 ~~f~~~~~~pp-g~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (900)
+++++ |+|||||+++| +|++.| +++|||||||||+||||+||||||++|++++|+||++||++
T Consensus 62 ------~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 62 ------NFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred ------ccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 34556 89999999999 788899 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHH
Q 002610 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (900)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~Y 323 (900)
||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccC
Q 002610 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (900)
Q Consensus 324 L~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~ 403 (900)
|+.++|+... .| .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 207 L~~~~~~~~~------------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYWK------------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccchh------------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 9999876311 12 57999999999999999999999999999999999998731
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHH
Q 002610 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (900)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (900)
+|++||||||||||++|++.||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 3679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHH
Q 002610 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (900)
Q Consensus 484 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (900)
++|+++||+++|.++||.|.+|||++|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999877643 4675 789999999999999888999999999999
Q ss_pred HHhcccc
Q 002610 564 YALAGSV 570 (900)
Q Consensus 564 ~AlaG~i 570 (900)
|||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3.8e-114 Score=964.18 Aligned_cols=405 Identities=28% Similarity=0.419 Sum_probs=363.1
Q ss_pred HHHHHHHhhhcCC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002610 62 KDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (900)
Q Consensus 62 ~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (900)
+++||||+.|.+. .++..+.+++|++++||.|+++++..|. ++|. ++.++|.. +.+++||++|+...
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~-~~v~~P~~-v~~~~DH~~p~~~~-- 69 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGI-DKVFDPER-IVIVVDHVVPASTI-- 69 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCC-CcCCCCCc-EEEEcCCCCCCCCh--
Confidence 4689999999764 3566788999999999999999987664 4464 34667763 78899999998864
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccce-ecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002610 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (900)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (900)
..+..++..++|.|. ++ +. |+++|+|||||+++| +|++.| +++|||||||||+||
T Consensus 70 ~~a~~~~~~r~fa~~--------~g------i~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 70 KAAEMQKLAREFVKK--------TG------IKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred hHHHHHHHHHHHHHH--------cC------CceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 344566667777662 33 43 689999999999999 899999 689999999999999
Q ss_pred cceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhh
Q 002610 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (900)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR 297 (900)
||+||||||++|++++|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccC
Q 002610 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (900)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP 377 (900)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999998765321 12 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002610 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 457 (900)
Q Consensus 378 ~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 457 (900)
++|+|++||+|+... +|+|||||||||||++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEGI---------------------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCCC---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 999999999997631 3679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002610 458 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 537 (900)
Q Consensus 458 k~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 537 (900)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++...+. +|++ +|||
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 899999999999999999999999999999999999999999999999998754432 3565 7899
Q ss_pred cCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 538 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 538 ~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
+||||+||||+....+|||||++||||||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999994
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=1.9e-113 Score=960.12 Aligned_cols=407 Identities=30% Similarity=0.440 Sum_probs=363.1
Q ss_pred cHHHHHHHHhhhcCC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002610 60 KSKDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (900)
Q Consensus 60 ~~~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (900)
.+|++||||+.|... .++..|.+++|++++||.|+++++..|.+ +|.+ ..++|. .+.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~-~~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPS-KIVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCC-cEEEECCCCCCCCCh
Confidence 368999999999764 25667889999999999999999876643 3543 366776 378899999999854
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccce-ecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
..+.+++..++|.|. + +++ |+++|+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE--------Q------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH--------c------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 344566666666652 2 344 678999999999999 889999 5899999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
||||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 375 (900)
+|||||||++|+||++||||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeee
Confidence 9999999999999999999999999999999854331 12 1479999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHH
Q 002610 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (900)
Q Consensus 376 gP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (900)
+|++|+|++|++|+++. +|++||||||||||++|+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 99999999999997631 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEe
Q 002610 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (900)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 535 (900)
| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++...+. +|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998654333 3564 78
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 999999999999888889999999999999999994
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.5e-113 Score=959.47 Aligned_cols=405 Identities=27% Similarity=0.403 Sum_probs=364.4
Q ss_pred HHHHHHHHhhhcCC--CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002610 61 SKDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (900)
Q Consensus 61 ~~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~ 138 (900)
++++||||+.|.+. ..+..|.+++|++++||.|+++++..|. ++| .+.++|.. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 46899999999764 2566788999999999999999987664 345 45777774 788999999998643
Q ss_pred chhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002610 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (900)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (900)
.+..++..++|.|. + ++++++||+|||||+++| +|++.| +++||+||||||+||
T Consensus 71 --~a~~~~~~r~fa~~--------~------gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAKE--------H------GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHHH--------c------CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 33445555555552 2 466789999999999999 899999 579999999999999
Q ss_pred cceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhh
Q 002610 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (900)
Q Consensus 218 lG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR 297 (900)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccC
Q 002610 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (900)
Q Consensus 298 ~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP 377 (900)
||||||++|+||++||||+|++|++||+.++|.+.. .| .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999876421 22 57999999999999999999999999
Q ss_pred CCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002610 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 457 (900)
Q Consensus 378 ~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 457 (900)
++|+|++|++++.+. +|++||||||||||++||++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998631 3569999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002610 458 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 537 (900)
Q Consensus 458 k~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 537 (900)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..++. +|++ +|||
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLG-------DGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 999999999999999999999999999999999999999999999999999865443 4675 7899
Q ss_pred cCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 538 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 538 ~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888889999999999999999994
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.9e-113 Score=950.19 Aligned_cols=379 Identities=36% Similarity=0.561 Sum_probs=347.0
Q ss_pred ceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhc
Q 002610 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (900)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~ 164 (900)
|++++||.|+|+++..|. ++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987653 45764 345553 7889999999863 2667888899998
Q ss_pred ccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeec
Q 002610 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (900)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~v 243 (900)
+++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 7999999999999999994 5567 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHH
Q 002610 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (900)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~Y 323 (900)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccC
Q 002610 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (900)
Q Consensus 324 L~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~ 403 (900)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+...
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~----------- 258 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI----------- 258 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc-----------
Confidence 99999865431 11 47999999999999999999999999999999999997630
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHH
Q 002610 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (900)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (900)
+|++||||||||||++|+++||++| ||+||+||||++|+|||++|+
T Consensus 259 ----------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 259 ----------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred ----------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 3679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHH
Q 002610 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (900)
Q Consensus 484 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (900)
++|+++||+++|+++||.|.+|||++|+|+++.+. +|++ +|||+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 99999999999999999999999999999977632 3565 789999999999998888899999999999
Q ss_pred HHhcccc
Q 002610 564 YALAGSV 570 (900)
Q Consensus 564 ~AlaG~i 570 (900)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1.5e-112 Score=950.78 Aligned_cols=409 Identities=32% Similarity=0.454 Sum_probs=362.4
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002610 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (900)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (900)
+|++|||++.|.+.. .+..|.+++|++++||.|+++++..|. ++|. +..+||. .+.+++||++|+..
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~-~v~~~~DH~vpa~~- 70 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPD-RVALVPDHFTPNKD- 70 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCC-CEEEEeCCCCCCCC-
Confidence 468999999997643 566788999999999999999987653 4554 3466776 47889999999985
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCC-cceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~-GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
...+..++..++|.| ++++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 71 -~~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 71 -IKSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred -HHHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 345567777777777 334433 467775 999999999 999999 5799999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 375 (900)
+|||||||++|+||++||||+|++|++||+.+++++. + .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~~--~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKREE--K----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccch--h----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 9999999999999999999999999999997654321 1 12 579999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHH
Q 002610 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (900)
Q Consensus 376 gP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (900)
+|++|+|++|++|+... |. +|++||||||||||++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 11 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEe
Q 002610 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (900)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 535 (900)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+. +||+ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998844433 3564 78
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
||+||||+||||+....+|||||++||||||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999999766789999999999999999994
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-111 Score=910.54 Aligned_cols=410 Identities=29% Similarity=0.444 Sum_probs=361.7
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002610 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (900)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~ 137 (900)
+|+.|||++.|.... .+..+..++|++|+||.|+|.++.-| +++|. +.++|.. +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999997643 23457789999999999999987533 34564 4566664 67899999999864
Q ss_pred cchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCC-CcceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg-~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
. .+.+++..+ +|.++| ++ ..|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~--~a~~~~~lr---~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 K--AAEQQKELR---ENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred H--HHHHHHHHH---HHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 3 334444444 444433 33 3456678 9999999999 999999 5899999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vA 375 (900)
+|||||||++|+||++|+|+||++|++||+. |.++...|+.. .+|++|.|+++++||+|+|+|+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~-------------~~~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKE-------------WDGAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHH-------------Hhcccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 9999999999999999999999999999983 33344567654 689999999999999999999999
Q ss_pred cCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHH
Q 002610 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (900)
Q Consensus 376 gP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (900)
||++|+|++|++|+.++. + +|+++|||||||||++||++||.+
T Consensus 275 ~p~~p~nv~~v~e~~~~~--------------i-----------------------~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP--------------I-----------------------KIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc--------------e-----------------------eeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999987421 1 467999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEe
Q 002610 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (900)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~v 535 (900)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|+|.+++.+ ||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---Ee
Confidence 9 8999999999999999999999999999999999999999999999999999776554 565 78
Q ss_pred eccCCCCCCCCCCCCCceEecChHHHHHHHhccccc
Q 002610 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (900)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~ 571 (900)
||+||||+||||+..+.+||+||+++||+|++|+|.
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 999999999999777789999999999999999994
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=7.8e-105 Score=892.39 Aligned_cols=403 Identities=24% Similarity=0.331 Sum_probs=350.5
Q ss_pred HHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002610 63 DVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (900)
Q Consensus 63 ~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (900)
++||||+++.+. ..+..|.+++|++++||.||++++..|.. +|. +.+||. .+.+++||++|+...
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~-~~v~~~DH~~p~~~~-- 68 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSAD-LVMQSFCHTAAYPKP-- 68 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCc-cEEEEcCCCCCCCCH--
Confidence 379999999764 25667999999999999999999877643 443 456776 367899999998854
Q ss_pred hhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCcccCcc
Q 002610 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 218 (900)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~gal 218 (900)
..+..++..++|.+++ +++|++||+|||||++.| +++|+ ++|||||||||+||
T Consensus 69 ~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 69 VDVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred HHHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 4455777788888742 356799999999999887 35786 56999999999986
Q ss_pred ceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHH----H--------HHHcCccceEEEEec
Q 002610 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGMFVEFYG 286 (900)
Q Consensus 219 G~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~----~--------L~~~G~~gk~VEf~G 286 (900)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998754 3 33345689999996
Q ss_pred CcccccChhhhhhhhccCcccCcceeeecCChHH-HHHHhhc----------CCCc-----chHHHHHHHHHHhhccccC
Q 002610 287 EGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----DTVSMIESYLRANKMFVDY 350 (900)
Q Consensus 287 ~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t-~~YL~~t----------gr~~-----~~~~~~e~y~~~~~l~~~~ 350 (900)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ .+.++++.|.+++.+|
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL--- 275 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc---
Confidence 599999999999999999999999999999988 8999996 5542 3455778888888877
Q ss_pred CCCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCccccc
Q 002610 351 SEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR 429 (900)
Q Consensus 351 ~~~D~~a~Y~~~ieiDLs~v-eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~ 429 (900)
.+|++|.|+++++||||+| ||+||+|++|+|++|++|+.+.
T Consensus 276 -~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~------------------------------------- 317 (436)
T cd01581 276 -EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK------------------------------------- 317 (436)
T ss_pred -cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC-------------------------------------
Confidence 4789999999999999999 9999999999999999997631
Q ss_pred CCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 002610 430 HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 509 (900)
Q Consensus 430 ~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~ 509 (900)
+|+++||||||| |++|++.||.+| ||+|++ .||++|+|||++|+++|+++|++++|.++||.|.+||||+
T Consensus 318 --~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~ 387 (436)
T cd01581 318 --KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSL 387 (436)
T ss_pred --ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccc
Confidence 356899999999 999999999999 999974 5999999999999999999999999999999999999999
Q ss_pred ccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhcccc
Q 002610 510 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (900)
Q Consensus 510 CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i 570 (900)
|+|+.+.+ .+||+ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 388 C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 388 CMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred ccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 99985543 35776 789999999999999 667899999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=7.7e-104 Score=867.26 Aligned_cols=361 Identities=30% Similarity=0.480 Sum_probs=319.2
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002610 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (900)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (900)
.+++||.|+++++. |. ++|. ++.++|. .+.+++||++|+... ..+..++..++|.|.
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~-~~~~~~DH~vp~~~~--~~~~~~~~lr~~ak~----------- 57 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPD-QIVMTLDHDVQNKSE--KNLKKYKNIESFAKK----------- 57 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCC-CEEEEcCCCCCCCCH--HHHHHHHHHHHHHHH-----------
Confidence 37999999998764 42 3464 4567776 378899999998854 234455555555552
Q ss_pred cccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecC
Q 002610 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (900)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (900)
+ +++|+|+|+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 58 --~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 58 --H-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred --h-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 2 567899999999999999 8999997 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHH
Q 002610 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (900)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL 324 (900)
|+|+|+|+|+|++||+||||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCC
Q 002610 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (900)
Q Consensus 325 ~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~ 404 (900)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 447999999999999999999999999997420
Q ss_pred CccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCCHHHH
Q 002610 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVT 483 (900)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G-~kv~p~Vk~~v~PgS~~V~ 483 (900)
+ -+|++||||||||||++||+.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ~-------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 N-------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred C-------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 0 0467999999999999999999999943333222 3399999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHH
Q 002610 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (900)
Q Consensus 484 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (900)
++|+++||+++|.++||.|.+|||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 9999999999999999999999999999999887544 665 689999999999998888999999999999
Q ss_pred HHhcccc
Q 002610 564 YALAGSV 570 (900)
Q Consensus 564 ~AlaG~i 570 (900)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=2.8e-99 Score=845.98 Aligned_cols=388 Identities=38% Similarity=0.602 Sum_probs=349.9
Q ss_pred eeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchhHHHhhhHHHHHHhhhhhhhhhhcc
Q 002610 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (900)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (900)
||++||+||++++.+|+.| |.+.+.++| .++.+++||++|+.. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p-~~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADP-SQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCc-ccEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887643 443234455 478999999999863 26667778888887
Q ss_pred cccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCcccCccceeeccCChHHHHHHHcCCcEEeecC
Q 002610 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (900)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~~m~g~~~~~~vP 244 (900)
+.|. ++++++|+|||||+++|++ +.| ++++|+||||||+||||++|||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7774 8999999999999999943 456 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChhhhhhhhccCcccCcceeeecCChHHHHHH
Q 002610 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (900)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~t~~YL 324 (900)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCC
Q 002610 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (900)
Q Consensus 325 ~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~ 404 (900)
+.++|++... .++.|.+. + .+|++|.|+++++||||+|+|+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987543 23333331 2 5899999999999999999999999999999999999752
Q ss_pred CccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHH
Q 002610 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484 (900)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~ 484 (900)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 14779999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHH
Q 002610 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 564 (900)
Q Consensus 485 ~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~ 564 (900)
+++++|++++|+++||.|..+||++|+|+++++..+ |++ +|+|+||||+||||+..+.+|||||++||||
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 999999999999999999999999999999887543 554 6899999999999998888999999999999
Q ss_pred Hhcccc
Q 002610 565 ALAGSV 570 (900)
Q Consensus 565 AlaG~i 570 (900)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=4.4e-97 Score=870.90 Aligned_cols=408 Identities=23% Similarity=0.318 Sum_probs=357.4
Q ss_pred ccHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002610 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (900)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~ 135 (900)
..+|++|||++++.+. .+|..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCCC
Confidence 4589999999999764 356779999999999999999986544 55665 4556653 678999999987
Q ss_pred CccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCCe-EeecCCCCcc
Q 002610 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (900)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (900)
. ..++..++..++|.+++ ++.+++||+|||||++ +|+++||+ ++||||||||
T Consensus 439 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 K--PVDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 4 35566778888888742 2345889999999985 35889986 5999999999
Q ss_pred cCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHH------------HHcCccceEE
Q 002610 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQML------------RKHGVVGMFV 282 (900)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L------------~~~G~~gk~V 282 (900)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+ +.+|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 7899999999999999999999999999999999999999999999994333 3345789999
Q ss_pred EEecCcccccChhhhhhhhccCcccCcceeeec-CChHHHHHHhhc----------CCCc-----chHHHHHHHHHHhhc
Q 002610 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (900)
Q Consensus 283 Ef~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp-~De~t~~YL~~t----------gr~~-----~~~~~~e~y~~~~~l 346 (900)
||. ||++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||++ .+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 788889999986 6642 356778999998888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCc
Q 002610 347 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 425 (900)
Q Consensus 347 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 425 (900)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 5799999999999999999 9999999999999999998631
Q ss_pred ccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002610 426 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505 (900)
Q Consensus 426 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 505 (900)
+|++||||||| |+++|++.||.+| ||+++++.||++|+|||+.|+++|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 35689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhcccc
Q 002610 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (900)
Q Consensus 506 GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i 570 (900)
||++|+||.+.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I 809 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRI 809 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCcc
Confidence 999999996553 35775 789999999999997 567899999999999999999
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=7.8e-96 Score=857.65 Aligned_cols=407 Identities=23% Similarity=0.325 Sum_probs=355.6
Q ss_pred ccHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002610 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (900)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~ 135 (900)
.++|++|||++.+.+. .+|..|..++|.|++||.||++++..|. ++|. ..++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-------~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------HhCC--ceECCCc-EEEEeCCCCCCC
Confidence 4689999999999764 3567899999999999999999976554 4444 3556653 678999999876
Q ss_pred CccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCCe-EeecCCCCcc
Q 002610 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (900)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (900)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 45666788888887742 344688999999999766 468975 6999999999
Q ss_pred cCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHH------------cCccceEE
Q 002610 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK------------HGVVGMFV 282 (900)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~------------~G~~gk~V 282 (900)
+ +| ||+|+|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999654442 45689999
Q ss_pred EEecCcccccChhhhhhhhccCcccCcceeeecCChH-HHHHHhhc----------CCCc-----chHHHHHHHHHHhhc
Q 002610 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (900)
Q Consensus 283 Ef~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~-t~~YL~~t----------gr~~-----~~~~~~e~y~~~~~l 346 (900)
||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++...+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999995 6654 356788899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCc
Q 002610 347 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 425 (900)
Q Consensus 347 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 425 (900)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 8 5799999999999999999 9999999999999999998631
Q ss_pred ccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002610 426 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505 (900)
Q Consensus 426 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 505 (900)
+|+++|||||| |+.+|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 7999999999999 9999998 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhcccc
Q 002610 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (900)
Q Consensus 506 GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i 570 (900)
||++|+||.+.+. +|++ +|||+||||+||||+. ..+|||||++|||+||+|+|
T Consensus 757 GCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I 809 (844)
T TIGR00117 757 GCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKI 809 (844)
T ss_pred ccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCccc
Confidence 9999999966643 4664 6899999999999984 57899999999999999999
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=1.6e-93 Score=835.46 Aligned_cols=408 Identities=23% Similarity=0.322 Sum_probs=353.1
Q ss_pred ccHHHHHHHHhhhcCC----CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 002610 59 VKSKDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 134 (900)
Q Consensus 59 ~~~~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~ 134 (900)
..+|++|||++++.+. .+|..|..++|.|++||.||++++..|..| .-++.||++ |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel----~~~~~dpdk------v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKDL----ACLGFSADL------VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHHh----cccccCccc------EEEEccCCCCC
Confidence 4689999999999753 356779999999999999999997655432 113445544 58899999887
Q ss_pred CCccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCC-eEeecCCCCc
Q 002610 135 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 213 (900)
Q Consensus 135 ~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~ 213 (900)
... .++..++..++|.++ + ++.+++||+|||||++.| +++|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~--------~------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRN--------R------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHH--------c------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 556677788888773 2 345788999999998754 77886 5899999999
Q ss_pred ccCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHH------HHHH------HcCccceE
Q 002610 214 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QMLR------KHGVVGMF 281 (900)
Q Consensus 214 ~~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~------~~L~------~~G~~gk~ 281 (900)
+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+ +.+++||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 87775 558899999999999999999999999999999999999999999997 4443 33468999
Q ss_pred EEEecCcccccChhhhhhhhccCcccCcceeeecCCh-HHHHHHhh----------cCCC-----cchHHHHHHHHHHhh
Q 002610 282 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DDTVSMIESYLRANK 345 (900)
Q Consensus 282 VEf~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De-~t~~YL~~----------tgr~-----~~~~~~~e~y~~~~~ 345 (900)
||| +||++||+++|||||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+|+|++...
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4543 345678899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCC
Q 002610 346 MFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 424 (900)
Q Consensus 346 l~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 424 (900)
+| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~-------------------------------- 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD-------------------------------- 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC--------------------------------
Confidence 87 5799999999999999999 9999999999999999997631
Q ss_pred cccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEec
Q 002610 425 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 504 (900)
Q Consensus 425 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 504 (900)
+|++||||||| |+++|++.||.+| +|+|+++.||++|+|||+.|+++|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 35689999999 7999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhcccc
Q 002610 505 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (900)
Q Consensus 505 ~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i 570 (900)
||||+|+||++.+. +|++ +|||+||||+||||+ ...+||+||++|||+||+|+|
T Consensus 830 PGCg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~I 883 (938)
T PLN00094 830 PGCSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRL 883 (938)
T ss_pred CccccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCcc
Confidence 99999999966653 4665 789999999999998 567999999999999999999
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1e-68 Score=527.19 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=167.5
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002610 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (900)
Q Consensus 674 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 753 (900)
+|||+||||||||||+|+++||||+||.++|++++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhcc
Q 002610 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 833 (900)
Q Consensus 754 ~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~ 833 (900)
.|+|||+|++||++++|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 002610 834 LTGHERYTID 843 (900)
Q Consensus 834 l~g~e~~~Id 843 (900)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999998874
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.4e-47 Score=426.67 Aligned_cols=417 Identities=24% Similarity=0.349 Sum_probs=330.4
Q ss_pred cHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 002610 60 KSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 136 (900)
Q Consensus 60 ~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~ 136 (900)
+-+.++|++.++.+. .++..+..+..-|-.||.||+|.-..|..| +-+|.+ +|+++..+..+..
T Consensus 372 G~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHTAa 438 (852)
T COG1049 372 GFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHTAA 438 (852)
T ss_pred cccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhccc---------chhhhhhcccccc
Confidence 457899999998764 356678889999999999999884444322 234544 3555555544332
Q ss_pred -ccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccCCeE-eecCCCCcc
Q 002610 137 -ARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTM 214 (900)
Q Consensus 137 -~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdtv-vGtDSHT~~ 214 (900)
+...+-..+...-.|--| +.++. ..||.||+|.+. +.+++|||+ .|+||||.+
T Consensus 439 ypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRf 493 (852)
T COG1049 439 YPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 493 (852)
T ss_pred cCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccccc
Confidence 233332233334445443 22333 458999999975 558899985 899999999
Q ss_pred cCccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHH-H-----HH--H----cCccceEE
Q 002610 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ-M-----LR--K----HGVVGMFV 282 (900)
Q Consensus 215 ~galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~-~-----L~--~----~G~~gk~V 282 (900)
.=| ++|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||+|-+|||..|-- . |. + +-..|+++
T Consensus 494 piG---isFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIl 570 (852)
T COG1049 494 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 570 (852)
T ss_pred ccc---ceecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeE
Confidence 855 46788888889999999999999999999999999999999999988742 2 22 1 12469999
Q ss_pred EEecCcccccChhhhhhhhccCcccCcceeeecCChH-HHHHHhhc----------CCCc-----chHHHHHHHHHHhhc
Q 002610 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (900)
Q Consensus 283 Ef~G~gv~~LS~~dR~TIaNMa~E~GAt~g~fp~De~-t~~YL~~t----------gr~~-----~~~~~~e~y~~~~~l 346 (900)
|. +|+.+|.+++-++++..++|..|..+.+-.+++ .++||+.. |..+ ..++.+|+|+....|
T Consensus 571 Ei--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~l 648 (852)
T COG1049 571 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPEL 648 (852)
T ss_pred Ee--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccc
Confidence 99 679999999999999999999999888776555 56898763 4443 346778889988877
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-ccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCc
Q 002610 347 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 425 (900)
Q Consensus 347 ~~~~~~~D~~a~Y~~~ieiDLs~v-eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 425 (900)
. .+|.+|+|..+|+|||+.| ||++|+|.+|||+..+|++..+
T Consensus 649 l----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~--------------------------------- 691 (852)
T COG1049 649 L----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD--------------------------------- 691 (852)
T ss_pred c----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC---------------------------------
Confidence 6 6899999999999999999 8999999999999999997631
Q ss_pred ccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEecc
Q 002610 426 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505 (900)
Q Consensus 426 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 505 (900)
.|+-+|||||... .-+++++|.+| +|.+=.-..|++|+|-++...++|.++|++.+|-++|+++--|
T Consensus 692 ------~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~P 758 (852)
T COG1049 692 ------KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMP 758 (852)
T ss_pred ------ccceeeeehhhcc-chhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCC
Confidence 2457899999754 56889999998 5544222378999999999999999999999999999999999
Q ss_pred CcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCCCCCcccCCCC
Q 002610 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDG 585 (900)
Q Consensus 506 GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G 585 (900)
||+.|+||.... ++|.. .+||++|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 759 GCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki--------------- 811 (852)
T COG1049 759 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI--------------- 811 (852)
T ss_pred CcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC---------------
Confidence 999999996553 45665 46899999999999975 4899999999999999998
Q ss_pred ceeecccCCCChHHHHHHhh
Q 002610 586 KKIFLRDIWPSSEEVAHVVQ 605 (900)
Q Consensus 586 ~~v~l~diwP~~~ei~~~~~ 605 (900)
|+.+|..+++.
T Consensus 812 ---------Pt~eEY~~~v~ 822 (852)
T COG1049 812 ---------PTVEEYMAYVA 822 (852)
T ss_pred ---------CCHHHHHHHHH
Confidence 89999888876
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=381.93 Aligned_cols=405 Identities=24% Similarity=0.295 Sum_probs=267.6
Q ss_pred HHHHHhhccccCCCCCCCCcccEEEEEEcCCcccccccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccce
Q 002610 339 SYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 418 (900)
Q Consensus 339 ~y~~~~~l~~~~~~~D~~a~Y~~~ieiDLs~veP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 418 (900)
+|.++..+|.+. .+|+.+.|+..++|..-++.|.+.|..+||+..|+..-.++.....+ + + -.......
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd-~-------i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD-K-------I--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch-H-------H--HHhhhhhc
Confidence 477788899875 78999999999999999999999999999999999875443211000 0 0 00112345
Q ss_pred eccCCCcccccCC--ceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCCHHHHHHHHHcCcHHHH
Q 002610 419 FNFHGTPAQLRHG--DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYL 495 (900)
Q Consensus 419 ~~~~g~~~~l~~g--~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk-~~v~PgS~~V~~~l~~~Gl~~~l 495 (900)
+.|+|.+...... .++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 6788876644433 4568999999999999999999999 9999988887 78999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccccccCCC
Q 002610 496 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFE 575 (900)
Q Consensus 496 ~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~i~~d~~ 575 (900)
.++||.+...||..|.|+.....-..+.| -+|+|||||||+|...++ +|+||.+.+|.++.|+.. ++
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~- 222 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GF- 222 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-cc-
Confidence 99999999999999999986655566665 389999999999999876 999999999999999863 11
Q ss_pred CCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccC-CCcccccccCCCCCccccCCCCccccCCCCCC
Q 002610 576 TEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 654 (900)
Q Consensus 576 ~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~ 654 (900)
+.+..++ +.-..|+..-..+-....+.+ .+..+.+ .++.-..+ +....-+.+..+.-+..++|.
T Consensus 223 --~~~~~k~-----~~~~~Ps~~l~~~g~s~sv~~-----~~~li~~ia~ds~t~i--~~~at~e~~s~~sSl~m~~F~- 287 (502)
T KOG0454|consen 223 --REFTGKD-----SLKVSPSPFLTLKGESPSVLP-----AKDLIVSIATDSSTDI--PRVATMEFSSTTSSLGMETFH- 287 (502)
T ss_pred --ccccccc-----cccCCCCceEEeCCCCccccc-----cccchhhhhccccccc--cceecccCCCccccccCccee-
Confidence 1111000 000111111000000000000 0000000 00000000 000000011111112223321
Q ss_pred CCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhh
Q 002610 655 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 734 (900)
Q Consensus 655 ~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~ 734 (900)
.+. .++.|||+||+|+|+ +||+.. ..+. ..++.|..+++.
T Consensus 288 ----------tLc-----~vv~dNiDTD~IIP~----------qfltli--~~~~-------------~~~~~f~~~~~d 327 (502)
T KOG0454|consen 288 ----------TLC-----GVVADNIDTDQIIPA----------QFLTLI--PSTG-------------LILSCFYEVALD 327 (502)
T ss_pred ----------eee-----hhhhhhCCcCcccCh----------hhhccc--ccch-------------hhhhhhhhheec
Confidence 122 245699999999999 788752 2222 246677777652
Q ss_pred hhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcc
Q 002610 735 NKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 814 (900)
Q Consensus 735 N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli 814 (900)
|. |. -+ ...++++. +.|+.. .|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|++
T Consensus 328 -----g~--~k-~~----~~dFv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~ 391 (502)
T KOG0454|consen 328 -----GL--PK-SF----VTDFVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSV 391 (502)
T ss_pred -----CC--ch-hh----ccceeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhHH
Confidence 11 10 00 11244444 344433 79999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCccchhhccCCCCeEEEEeCCC
Q 002610 815 GMGIIPLCFKPGEDAETHGLTGHERYTIDLPS 846 (900)
Q Consensus 815 ~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~ 846 (900)
.+|.+|..-++....+. ...++..++.+..
T Consensus 392 atG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 392 ATGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred hcCCccCCCceeeeccc--ceecceeeEEccc
Confidence 99998876544332221 1123455565543
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=6.6e-40 Score=319.28 Aligned_cols=141 Identities=35% Similarity=0.481 Sum_probs=124.1
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002610 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (900)
Q Consensus 674 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 753 (900)
|..++||||||||||+ ||++ |||.+-+.+.+|. +..|.+. | +-+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 3568999999999984 7886 6788888888884 4567664 3 334667889999
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhcc
Q 002610 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 833 (900)
Q Consensus 754 ~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~ 833 (900)
.++++++|++|++.|+|+|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|++.++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888775
Q ss_pred CCCCeEEEEe
Q 002610 834 LTGHERYTID 843 (900)
Q Consensus 834 l~g~e~~~Id 843 (900)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567778874
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1.1e-35 Score=297.65 Aligned_cols=156 Identities=29% Similarity=0.491 Sum_probs=126.9
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002610 672 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 751 (900)
Q Consensus 672 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 751 (900)
+.++|||||||||+|+ +||.. .|.+.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 5789999999999997 89864 256778899998876 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhh
Q 002610 752 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 831 (900)
Q Consensus 752 g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~ 831 (900)
.+.+.+ ...|||||+|||||||||||+|+++++||+||||+||+|||++||+|+|+||+++++ +++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 122333 247999999999999999999999999999999999999999999999999999964 2554
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 002610 832 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 895 (900)
Q Consensus 832 l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 895 (900)
+ ..++.++||+.. ++|.+ ..+|+++.+.. + ++.+++++++||+++|++++.
T Consensus 109 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 I--EDGDEVEVDLET--------GVITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred c--CCCCEEEEECCC--------CEEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhc
Confidence 3 567889999765 24433 23478888863 3 889999999999999999875
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=296.73 Aligned_cols=157 Identities=31% Similarity=0.493 Sum_probs=126.9
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002610 672 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 751 (900)
Q Consensus 672 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 751 (900)
+.++|||||||||+|+ +||+.. .|.+.|.+++|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 4689999999999998 898741 255778888888765 1
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhh
Q 002610 752 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 831 (900)
Q Consensus 752 g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~ 831 (900)
+.+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++. .+.++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 12245653 479999999999999999999999999999999999999999999999999874 244555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002610 832 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 897 (900)
Q Consensus 832 l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 897 (900)
+ ..+++++||+.. ++++. +|+++.+.+ .++.+++++++|||++|++++-..
T Consensus 110 l--~~gd~i~vDl~~--------~~v~~---~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~~~ 160 (166)
T PRK14023 110 L--EDGDEVELDLET--------GVLTR---GGETFQLRP--PPEFLLEALKEGSILEYYRKHGRF 160 (166)
T ss_pred h--CCCCEEEEECCC--------CEEEE---CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhCCC
Confidence 3 456789999875 34442 567788877 588999999999999999997543
No 40
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=1.9e-35 Score=293.41 Aligned_cols=154 Identities=28% Similarity=0.483 Sum_probs=122.4
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002610 672 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 751 (900)
Q Consensus 672 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 751 (900)
+.++||||+||||+|+ +||.. .|.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999997 88862 356778899998875 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhh
Q 002610 752 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 831 (900)
Q Consensus 752 g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~ 831 (900)
.+.+++ .+.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+ |+... .+.++.
T Consensus 41 --------f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 124553 24799999999999999999999999999999999999999999999996 66533 344555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002610 832 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 893 (900)
Q Consensus 832 l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~ 893 (900)
+ ..+++++||+.. .+|+. ..+|++|.+.. .++.+++++++||+++|+++
T Consensus 108 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEK--------GIIKN-LTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCC--------CEEEE-ecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 4 456789999865 23321 24578888883 37899999999999999874
No 41
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.9e-35 Score=293.07 Aligned_cols=152 Identities=31% Similarity=0.524 Sum_probs=122.2
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCC
Q 002610 672 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 751 (900)
Q Consensus 672 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 751 (900)
..++||||+||||+|+ +||.. .+.|.|.+++|.++| |+
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------------PE 40 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------------ch
Confidence 3689999999999997 89863 245678889998875 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhh
Q 002610 752 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 831 (900)
Q Consensus 752 g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~ 831 (900)
.+.+.+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||+++++ +.
T Consensus 41 --------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 41 --------FAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred --------hhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 1123332 37999999999999999999999999999999999999999999999998887764 22
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002610 832 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 894 (900)
Q Consensus 832 l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 894 (900)
+..++.++||+.. ++|+ ..+|++|.+.. .++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLET--------GEIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCC--------CEEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 3456789999775 3444 35567787743 389999999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=294.92 Aligned_cols=165 Identities=25% Similarity=0.451 Sum_probs=129.9
Q ss_pred EeecC-CCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecC
Q 002610 672 LLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIP 750 (900)
Q Consensus 672 L~~~g-D~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p 750 (900)
..++| |||+||+|+|+ |||+. +++.+| .+++|.++|+.. |
T Consensus 11 ~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------------P 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------------P 51 (191)
T ss_pred EEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------------c
Confidence 45666 99999999998 99985 667777 478999998531 2
Q ss_pred CCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchh
Q 002610 751 TGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 830 (900)
Q Consensus 751 ~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~ 830 (900)
+ |+.+. ++|+. ..|||||+|||||||||||+||++.+||+||||+||+|||++||+|+|+||+...+++..+
T Consensus 52 d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 1 34443 56764 3799999999999999999999999999999999999999999999999999987764444
Q ss_pred hccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc----CHHHHHHHHHh
Q 002610 831 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 896 (900)
Q Consensus 831 ~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG----GiL~yv~~~~~ 896 (900)
.+....+++++|||+. ++| +..++.++...+ ++..++++.+| |++.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~--------~~v--~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLET--------GEV--TNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCC--------CeE--EeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 4433356789999886 333 334443343332 78999999999 99999998764
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=9.4e-34 Score=296.60 Aligned_cols=170 Identities=28% Similarity=0.414 Sum_probs=124.9
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchh--hhhhhcCCCC
Q 002610 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIR--LVNKLLNGEV 742 (900)
Q Consensus 665 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r--~~N~l~~~~~ 742 (900)
.++| |+ .++|||||||||+|+ +||.... |...+.|.|.+..|.+++ ...++
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiPa----------~~l~~~~----------sn~~~~~~l~~~~F~~l~~~~~~r~----- 120 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIPA----------EYLTLVP----------SKPDEYEKLGSYALIGLPAFYKTRF----- 120 (246)
T ss_pred eEEE-eE-EEeCCCcchhhcccH----------HHhcccc----------ccCCCHHHHHHhhhccCCcchhhcc-----
Confidence 3544 55 689999999999998 7887521 001135778888887764 11111
Q ss_pred CCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCc-cccc
Q 002610 743 GPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPL 821 (900)
Q Consensus 743 g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~G-iLpL 821 (900)
...|+. + .+ ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||+
T Consensus 121 ------v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi 182 (246)
T PLN00072 121 ------VEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPL 182 (246)
T ss_pred ------cCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceee
Confidence 111111 0 11 369999999999999999999999999999999999999999999999 7888
Q ss_pred ccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002610 822 CFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 894 (900)
Q Consensus 822 ~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 894 (900)
+. +.+.++.+ ..+++++||+.+ ++|+. ..+|++|.+.+ .+.+++++++|||++|++++
T Consensus 183 ~~-~~~~~e~i--~~Gd~i~VDl~~--------~~v~n-~t~g~~~~~~p---~~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 183 ES-EVRICEEC--KTGDVVTVELGN--------SVLIN-HTTGKEYKLKP---IGDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred cc-cHHHHHhc--CCCCEEEEECCC--------CEEEE-CCCCeEEEecC---CHHHHHHHHcCCHHHHHHhh
Confidence 74 33444443 456789999764 33332 35678898887 33499999999999999986
No 44
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=4.1e-35 Score=282.74 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=117.5
Q ss_pred hHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCC
Q 002610 698 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 777 (900)
Q Consensus 698 ~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~ 777 (900)
+||+.+|+...++++|+.||+||++|.+++|.|.++.|.+..+...+.+.+.|+++.+.+++++++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 58888999999999999999999999999999999999999888888999999999999999999999888888888889
Q ss_pred ccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCC
Q 002610 778 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 825 (900)
Q Consensus 778 nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~ 825 (900)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=3.3e-32 Score=260.01 Aligned_cols=121 Identities=45% Similarity=0.726 Sum_probs=95.1
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCc
Q 002610 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (900)
Q Consensus 674 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~ 753 (900)
++|||||||||+|++. +||.+ |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999963 35554 3566778888887643 1
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhcc
Q 002610 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 833 (900)
Q Consensus 754 ~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~ 833 (900)
+.+.+++..+ ..|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|+|||++++.+.++.
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 1123444322 46999999999999999999999999999999999999999999999999999987665554
Q ss_pred CCCCeEEEEeC
Q 002610 834 LTGHERYTIDL 844 (900)
Q Consensus 834 l~g~e~~~Idl 844 (900)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34456666653
No 46
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=2.7e-31 Score=270.68 Aligned_cols=163 Identities=26% Similarity=0.407 Sum_probs=122.0
Q ss_pred eEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeec
Q 002610 670 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 749 (900)
Q Consensus 670 ~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~ 749 (900)
|+....||||+||+|+|+ +||+. +++ +.+.+++|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP~----------rfl~~--~~~-------------~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIPK----------QFLKR--ITR-------------TGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhHH----------HHhCc--CCH-------------HHHHHhcccccccccc--ccC-CCC----
Confidence 555555999999999998 99974 233 4467899999997411 110 010
Q ss_pred CCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccch
Q 002610 750 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 829 (900)
Q Consensus 750 p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~ 829 (900)
|+ +++++ .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+..
T Consensus 58 p~----F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 PD----FVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred cc----hhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 21 44444 56654 479999999999999999999999999999999999999999999999999999865444
Q ss_pred hhcc--CCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002610 830 ETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 830 ~~l~--l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 885 (900)
+.+. ...+++++||+.. ++|+. .+|.++.+.+ ++..++.|-.|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~--------~~v~~--~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLEN--------QLIHD--SEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCC--------CEEEe--CCCeEEEEEe---CHHHHHHHHcC
Confidence 4321 2567789999876 34443 4567777774 67778888777
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.97 E-value=6.5e-31 Score=270.36 Aligned_cols=163 Identities=27% Similarity=0.438 Sum_probs=122.4
Q ss_pred cccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCc
Q 002610 666 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 745 (900)
Q Consensus 666 i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~ 745 (900)
++| +++.+.|||||||+|+|+ +||+. ++ .|.|.++.|.++|+... |...
T Consensus 7 i~G-~~~~l~~dnIDTD~IiPa----------~fl~~--~~-------------~~~l~~~~f~~~r~~~~---~~~~-- 55 (200)
T PRK01641 7 HTG-LAVPLDRANVDTDQIIPK----------QFLKR--IT-------------RTGFGKGLFDDWRYLDD---GQPN-- 55 (200)
T ss_pred EEE-EEEEcCCCCCChhhcchH----------hHcCc--CC-------------HHHHHHhhhcccccccc---CCCC--
Confidence 444 677777999999999998 89864 22 34567899999986321 1111
Q ss_pred eeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCC
Q 002610 746 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 825 (900)
Q Consensus 746 t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~ 825 (900)
| .+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++
T Consensus 56 ----p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~ 123 (200)
T PRK01641 56 ----P----DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPE 123 (200)
T ss_pred ----C----Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCH
Confidence 1 134443 56653 47999999999999999999999999999999999999999999999999999975
Q ss_pred ccchhhcc-C--CCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002610 826 GEDAETHG-L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 826 ~~~~~~l~-l--~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aG 885 (900)
....+... + ..++.++||+.. ++|+. .|+++.+.+ ++..++++.+|
T Consensus 124 ~~i~~l~~~~~~~~g~~i~vDl~~--------~~v~~---~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 124 EDVDELFKLVEANPGAELTVDLEA--------QTVTA---PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCC--------CEEec---CCeEEEEEc---CHHHHHHHHcC
Confidence 43332221 2 456789999875 33432 256777773 77889999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=3.7e-29 Score=227.20 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=62.8
Q ss_pred eEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeC
Q 002610 771 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 844 (900)
Q Consensus 771 ~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl 844 (900)
.|||+|+|||||||||||+|+++++|+++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988765554 2234455566653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.95 E-value=8.3e-29 Score=223.47 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=63.3
Q ss_pred eEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEe
Q 002610 771 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 843 (900)
Q Consensus 771 ~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Id 843 (900)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++...++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 69999999999999999999999999999999999999999999999999999887766653 445666654
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.93 E-value=4.6e-26 Score=270.51 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=121.5
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCC
Q 002610 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (900)
Q Consensus 665 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~ 744 (900)
.|++ +| .++||||+|||||||+ |+.. |.|.+...+..|.+.+
T Consensus 165 ~i~g-~V-~KvgdnInTD~I~Pa~----------~~~~--------------Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KITV-TV-FKVTGETNTDDLSPAP----------DAWS--------------RPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccEE-EE-EEeCCCCchhccCCcc----------cccc--------------CCCHHHHHHHhccCCC------------
Confidence 4554 55 8999999999999994 5532 4566666666665442
Q ss_pred ceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccc------------cccCceEEEecchhhhhhhh
Q 002610 745 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP------------MLLGVKAVIAKSFERIHRSN 812 (900)
Q Consensus 745 ~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~------------~~lGVraVIA~SFarIh~~N 812 (900)
|+ +.+.+++++..| ..|+|+|+|||||||||||++++ ...+.++|||+||+|||++|
T Consensus 207 -----p~-----f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~N 275 (835)
T PRK09238 207 -----PG-----PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNT 275 (835)
T ss_pred -----Cc-----HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhh
Confidence 11 233444444455 25999999999999999999996 23335999999999999999
Q ss_pred cccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHHH
Q 002610 813 LVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYV 891 (900)
Q Consensus 813 li~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~yv 891 (900)
++|+|+|||+++ ++. +..++.++||+.+ ++|+ ..+|+ .+.+.+ .++.+++++++||++||+
T Consensus 276 ain~GlLpIe~d----~~~--i~~Gd~i~Id~~~--------g~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~i 337 (835)
T PRK09238 276 MEDSGALPIELD----VSK--LNMGDVIDIYPYK--------GKIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPLI 337 (835)
T ss_pred hHHcCCceEEeC----HHH--cCCCCEEEEECCC--------CEEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHHH
Confidence 999999999985 333 3457789998775 2343 23443 355655 578899999999999999
Q ss_pred HHHHh
Q 002610 892 IRNLI 896 (900)
Q Consensus 892 ~~~~~ 896 (900)
+.|-+
T Consensus 338 ~gr~l 342 (835)
T PRK09238 338 IGRGL 342 (835)
T ss_pred Hhccc
Confidence 98754
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.93 E-value=7.5e-27 Score=222.35 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=80.3
Q ss_pred cCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCCceeecCCCcc
Q 002610 675 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 754 (900)
Q Consensus 675 ~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~g~~ 754 (900)
..|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 2 ~~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~--- 38 (129)
T cd01674 2 DADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE--- 38 (129)
T ss_pred CccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch---
Confidence 3589999999998 6773111 134667777776653 11
Q ss_pred cccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCC
Q 002610 755 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 825 (900)
Q Consensus 755 ~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~ 825 (900)
.+.+.+ ...|||+|+|||||||||||+|+++.+||+||||+||+|||+||++|+|+|||++++
T Consensus 39 -----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 -----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 122333 247999999999999999999999999999999999999999999999999999875
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=8.5e-25 Score=239.75 Aligned_cols=420 Identities=14% Similarity=0.055 Sum_probs=295.6
Q ss_pred cHHHHHHHHhhhcCC---CCceeEeeccceeeeecCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 002610 60 KSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 136 (900)
Q Consensus 60 ~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~inp~~pv~lviDH~v~~~~ 136 (900)
.++..++|+++..+. ..+-++...+|-.+.||..+.-+..-+ .++++.....|+|.. +...+||..-+.-
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 578889999887543 234567788888899998776554322 122333334455542 4678999755543
Q ss_pred ccchhHHHhhhHHHHHHhhhhhhhhhhcccccccceecCCCCcceeeeeecccceeeecCCCcccC-CeEeecCCCCccc
Q 002610 137 ARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (900)
Q Consensus 137 ~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (900)
.+ .-......++..|-...-.| .|- .+--+|..-+--.|.||.-. -+ .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~yer---ca------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHYER---CA------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHHHH---hh------hccCCCccccccccccchhh
Confidence 22 11112222333332221122 453 23334555555579999732 22 455566 4689999999999
Q ss_pred CccceeeccCChHHHHHHHcCCcEEeecCcEEEEEEecccCCCCChhhHHHHHHHHHHHcCccceEEEEecCcccccChh
Q 002610 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (900)
Q Consensus 216 galG~lg~GVGg~ea~~~m~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (900)
++.+.++-|+|+.++.....+....+++|.++.+++.|+.++-..++|+++.+....-..+...+..||-+-.. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999998888999999999999999999999999999999888888888899999977666 89999
Q ss_pred hhhhhhccCcccCcceeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCC-CCcccEEEEEEcCCccccc
Q 002610 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQS-ERVYSSYLELNLEEVVPCV 374 (900)
Q Consensus 296 dR~TIaNMa~E~GAt~g~fp~De~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~D~-~a~Y~~~ieiDLs~veP~v 374 (900)
.|+|||||..|-+-|-+++|+|-.|+-|-....++.- + -|+ .|. ++.|...+.+|.+..+|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~~----~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EVA----LDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hhe----ecCCchhhccceeccccccceeE
Confidence 9999999999999999999998777666443333221 1 121 222 3678999999999999999
Q ss_pred ccCCCCCCcccccccchhhhhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHH
Q 002610 375 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAA 454 (900)
Q Consensus 375 AgP~~P~~~~~l~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 454 (900)
+.|+. ||.-==|+- .|-+|...++|+|+-..-++.|+
T Consensus 349 iii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I--- 385 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI--- 385 (502)
T ss_pred EEecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH---
Confidence 98887 543111110 13355677899999998887654
Q ss_pred HHHHHHHhcCCccCCceeEEEecCCHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhc
Q 002610 455 LVAKKACELGLEVKPWIKTSLAPGSGVVTK-----YLQNS---GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAIT 526 (900)
Q Consensus 455 lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~-----~l~~~---Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~ 526 (900)
.+|+.++.|++++. -..+.|..+-++. .+..+ =++.+++..+..=+.|-|..|.++.-+ .+-...+
T Consensus 386 -FfrN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~ 459 (502)
T KOG0454|consen 386 -FFRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYAR 459 (502)
T ss_pred -HHHhHHhcCCccCC--CceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhc
Confidence 56777889998773 3445555433332 12121 145667777776678899999997522 1222222
Q ss_pred cCceEEEEeeccCCCCCCCCCCCCCceEecChHHHHHHHhccc
Q 002610 527 ENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 569 (900)
Q Consensus 527 ~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~ 569 (900)
.+ .+|+|.||||++|||....++|||||.+|+|+++.|+
T Consensus 460 -ke---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 -KE---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred -cc---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 23 2689999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.89 E-value=7.1e-24 Score=204.31 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=51.5
Q ss_pred eEEEeCCccCCCCcchhhhcccc------------ccCceEEEecchhhhhhhhcccCcccccccC
Q 002610 771 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 824 (900)
Q Consensus 771 ~IiVAG~nyG~GSSRE~Aa~~~~------------~lGVraVIA~SFarIh~~Nli~~GiLpL~f~ 824 (900)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~ 117 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLD 117 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeC
Confidence 49999999999999999999998 7799999999999999999999999999876
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.88 E-value=8.1e-23 Score=242.44 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=119.5
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccCCCchhhhccccccchhhhhhhcCCCCCC
Q 002610 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (900)
Q Consensus 665 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~ygsrrgN~evm~rg~F~n~r~~N~l~~~~~g~ 744 (900)
.|++ + ..++||+|+||+|||+ +||..+ .+.+.+.+..|.+.+
T Consensus 166 ~i~g-~-V~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~------------ 207 (844)
T TIGR00117 166 KITV-T-VFKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR------------ 207 (844)
T ss_pred heEE-E-EEEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC------------
Confidence 4555 4 4699999999999998 788653 233444444443332
Q ss_pred ceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccc-------------cccCceEEEecchhhhhhh
Q 002610 745 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRS 811 (900)
Q Consensus 745 ~t~~~p~g~~~~i~~aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~-------------~~lGVraVIA~SFarIh~~ 811 (900)
|+ ..+.-.+.++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+|||+|
T Consensus 208 -----p~-----~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfr 275 (844)
T TIGR00117 208 -----EG-----IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFN 275 (844)
T ss_pred -----cc-----HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhc
Confidence 11 11111233444433 999999999999999999999 9999 99999999999999
Q ss_pred hcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHH
Q 002610 812 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQY 890 (900)
Q Consensus 812 Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~y 890 (900)
|++|.|+|||+++ .+. +..|+.++||+.++ +|+. .+|+ .+++.+ .++..++++++||++||
T Consensus 276 nain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~I~n--~~g~~~~~f~~--~p~~l~div~AGGli~~ 337 (844)
T TIGR00117 276 TMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------EITN--HEGELLATFEL--KPETLLDEVRAGGRIPL 337 (844)
T ss_pred chhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------EEEe--CCCCEEEEeee--CCHHHHHHHHcCCchhh
Confidence 9999999999875 222 45678899987752 3332 2453 377765 46788999999999999
Q ss_pred HHHHHh
Q 002610 891 VIRNLI 896 (900)
Q Consensus 891 v~~~~~ 896 (900)
+.-|-+
T Consensus 338 i~gr~l 343 (844)
T TIGR00117 338 IIGRGL 343 (844)
T ss_pred hhcccc
Confidence 987754
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.76 E-value=9.7e-19 Score=166.62 Aligned_cols=91 Identities=29% Similarity=0.318 Sum_probs=69.6
Q ss_pred CCCcchhhhccccccCceEEEecchhhhhhhhcccCcccccccCCccchhhccCCCCeEEEEeCCCCcccCCCCceEEEE
Q 002610 781 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 860 (900)
Q Consensus 781 ~GSSRE~Aa~~~~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~ 860 (900)
||||||||+|+++.+||+||||+||++||++||+|+|+||+.+.++.......+..+++++||+.+ ++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~--------~~v~-- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQ--------QKII-- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCC--------CEEE--
Confidence 999999999999999999999999999999999999999999876543322345667889999876 3333
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhc
Q 002610 861 TDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 861 ~~~G~~f~~~~~~~t~~e~~~~~aG 885 (900)
. .+.+|.+.+ .+..+..|-+|
T Consensus 72 ~-~~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 S-PVEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred c-CCeEEEEEE---CHHHHHHHHhC
Confidence 2 235677776 33444555555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.74 E-value=5.4e-18 Score=201.40 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=96.4
Q ss_pred HHHHHHhcCCceEEEeCCccCCCCcchhhhccc-------------cccCceEEEecchhhhhhhhcccCcccccccCCc
Q 002610 760 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 826 (900)
Q Consensus 760 aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~-------------~~lGVraVIA~SFarIh~~Nli~~GiLpL~f~~~ 826 (900)
.-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+|||+||++|.|+|||+++
T Consensus 284 ~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~-- 359 (938)
T PLN00094 284 QIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD-- 359 (938)
T ss_pred HHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc--
Confidence 33677888886 888999999999999999999 9999999 999999999999999999999886
Q ss_pred cchhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEE-EEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002610 827 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 896 (900)
Q Consensus 827 ~~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f-~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 896 (900)
.+. +..|+.++||..+ | +|+. ..+|+++ .+.+ .++..++++++||++||++-|-+
T Consensus 360 --v~~--i~~GD~I~id~~~-------G-~I~n-~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 --VKN--LNMGDVIDIYPYE-------G-VVKR-HGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred --Hhh--cCCCCEEEEEcCC-------C-EEEe-cCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 222 4557889998765 2 3322 3467777 5554 47789999999999999998754
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.21 E-value=2e-06 Score=88.10 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=71.4
Q ss_pred HHHHHHhcCCceEEEeCCccCCCCcchhhhccccccC------------ceEEEecchhhhhhhhcccCcccccccCCcc
Q 002610 760 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 827 (900)
Q Consensus 760 aa~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lG------------VraVIA~SFarIh~~Nli~~GiLpL~f~~~~ 827 (900)
+-+..|+.|.|++.| |.--|+||||--|.-...... .-.||...++.||++-+---|-||++++-
T Consensus 45 ~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv-- 121 (204)
T PF06434_consen 45 QIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDV-- 121 (204)
T ss_dssp HHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE-----
T ss_pred HHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEec--
Confidence 446778889886666 777999999998876654332 24688999999999999999999998642
Q ss_pred chhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002610 828 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYVIRNLI 896 (900)
Q Consensus 828 ~~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~-~f~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 896 (900)
-.+..++.++|+.-+ | ++. ..+|+ .-++.+ .++...+-+||||-+|.+.-|-+
T Consensus 122 ----~~l~~Gdvi~I~p~~-------g-ki~--~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 122 ----SSLNTGDVITIYPYE-------G-KIY--KENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ----TT--TT-EEEEETTT-------T-EEE--ETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred ----cccCCCcEEEEecCC-------c-EEE--CCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHH
Confidence 224557888887554 2 232 24442 122222 23446688999999999987754
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.55 E-value=0.036 Score=64.06 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=59.5
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002610 432 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 507 (900)
Q Consensus 432 ~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 507 (900)
+|+.++|| |=--|.+.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|..|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45667775 8888899999999999 99999999988766 678999999999999999999999996655
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.40 E-value=0.025 Score=66.72 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=72.4
Q ss_pred HHHHHhcCCceEEEeCCccCCCCcchhhhccccccCc------------eEEEecchhhhhhhhcccCcccccccCCccc
Q 002610 761 AMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGED 828 (900)
Q Consensus 761 a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV------------raVIA~SFarIh~~Nli~~GiLpL~f~~~~~ 828 (900)
-+..++.|.|.+.|+ .--|+||||--|.-.....+- -.|+..-.+.||++-+-.-|-||+++.-
T Consensus 214 i~~lk~Kg~~vayvg-dvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv--- 289 (852)
T COG1049 214 IEALKQKGHPVAYVG-DVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV--- 289 (852)
T ss_pred HHHHhhcCceEEEec-cccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee---
Confidence 367788888765555 459999999987654433222 2344455677888888888888887531
Q ss_pred hhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002610 829 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 894 (900)
Q Consensus 829 ~~~l~l~g~e~~~Idl~~~~~~~~~~~~v~v~~~~G~~f~~~~~~~t~~e~~~~~aGGiL~yv~~~ 894 (900)
-.+..|+.++|+--+ | +++ ...+|+.+ .+..+-++..++-+|+||-+|.+.-|
T Consensus 290 ---~~l~~Gdvi~i~py~-------g-ki~-~~~~ge~v-~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ---SNLEMGDVIDIYPYE-------G-KIR-NNNTGEVV-ATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---ccccccceEEeeccC-------C-eee-ccCCCcEE-EEeecCchhHHHHHhcCCceeEEEcc
Confidence 123446667766332 2 222 12234322 12222478889999999998877654
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.77 E-value=0.28 Score=55.70 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=57.5
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002610 432 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 507 (900)
Q Consensus 432 ~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 507 (900)
.++..+|| |---|...++..|.+| +|+|-++.+.++|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 45566675 7778899999999999 88888888877665 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=90.14 E-value=0.66 Score=53.62 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.5
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002610 433 VVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 512 (900)
Q Consensus 433 V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG 512 (900)
+++++| +|=--|.+.++.-|.+| +|++.++.++++|. -|+.|+ +.+.|+.+.++++|+.++.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556677 68888899999999999 89877777766555 567777 89999999999999999997776 664
No 62
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=29.45 E-value=44 Score=30.65 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.5
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002610 437 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (900)
Q Consensus 437 ~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 468 (900)
+|+||..|.-... +||..|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 6899999987765 477888888888998777
No 63
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=25.90 E-value=61 Score=32.25 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCCchHHHhhh---ccCceEEEEeeccCCCC
Q 002610 515 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 542 (900)
Q Consensus 515 g~l~~~~~~~i---~~~~~~~~~vsS~NRNF 542 (900)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 67888888877 45577788889999999
No 64
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=25.87 E-value=60 Score=31.99 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=24.8
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhc---cCceEEEEeeccCCCC
Q 002610 500 FHIVGYGCTTCIGNSGDIDDAVAAAIT---ENDIVAAAVLSGNRNF 542 (900)
Q Consensus 500 ~~i~~~GC~~CiG~~g~l~~~~~~~i~---~~~~~~~~vsS~NRNF 542 (900)
|.++.|.=+..-+ .+.++.++.+-+. ..+.+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444443333332 3448888888887 4556666788999999
No 65
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.90 E-value=74 Score=31.43 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.2
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002610 435 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (900)
Q Consensus 435 ~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 468 (900)
+++||+|..|=-.-.| ||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6899999999776665 66778888999998777
No 66
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=22.29 E-value=1.6e+02 Score=29.57 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred HcCcHHHHHhcCcEEeccCcccccCCC
Q 002610 488 NSGLQKYLNHLGFHIVGYGCTTCIGNS 514 (900)
Q Consensus 488 ~~Gl~~~l~~aG~~i~~~GC~~CiG~~ 514 (900)
+..+-..|.+-+-.|.++||+-|---+
T Consensus 79 Ecela~~ls~~~~~I~gFG~SDc~cks 105 (132)
T COG1833 79 ECELARALSKNFEGIEGFGCSDCKCKS 105 (132)
T ss_pred HHHHHHHHHhcCCccCCCCCCCCCCcc
Confidence 455666788888899999999987543
Done!