Query 002610
Match_columns 900
No_of_seqs 350 out of 2889
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 16:29:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002610.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1328-1332//hhsearch_pdb/002610hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 2113.1 65.0 887 4-897 1-888 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1497.1 56.5 700 59-895 33-751 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 851.7 38.4 448 37-612 343-838 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 355.2 -1.4 283 540-898 47-355 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 297.0 8.6 181 650-885 5-187 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 293.3 10.2 157 670-897 6-162 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 288.1 7.2 152 672-896 7-159 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 273.8 10.6 161 669-898 7-167 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 256.6 6.0 166 665-885 9-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 248.8 6.6 158 665-885 9-169 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=2113.07 Aligned_cols=887 Identities=61% Similarity=1.066 Sum_probs=838.6
Q ss_pred CCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 99710012410069997225997178999999898981357787421025595676399999998311499994058412
Q 002610 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (900)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllEn~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (900)
.+||++.+++|...+ +.|+||+|++++...+++|||||||||||+|||||+..+++++++++++|..+..++.+|.|+
T Consensus 1 ~~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 78 (888)
T 2b3y_A 1 SNPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78 (888)
T ss_dssp CCTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEEC
T ss_pred CCCHHHHHCCCCCCC--CEEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 982045433267889--626999847726332310883299999888750578633699999996543468989778896
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55345306873669998999999999909998743788877999368887797552669985149999994431113311
Q 002610 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (900)
Q Consensus 84 pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw 163 (900)
||||+|||+||+|+++||++||++++++|.||.|+||.+|+++++||+||++.++..+|..+|+.++|+||.|||.||||
T Consensus 79 pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w 158 (888)
T 2b3y_A 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158 (888)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 44788774635789999999899998619984333778870699579987677665477999999999985215777898
Q ss_pred CCCCCCCCEECCCCCCCEEEEEECCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHCCCCEEEEC
Q ss_conf 01124663020899861001320101204542798224783762389875567553042257868999999279078445
Q 002610 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (900)
Q Consensus 164 ~~~~f~~~~v~ppG~GI~Hqv~lE~la~~v~~~~G~~~PdtivGtDSHT~~~galG~la~GVGg~ea~aamlg~~~~~~v 243 (900)
++++|+||+|+|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|++++|+|||+||++
T Consensus 159 ~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~ 238 (888)
T 2b3y_A 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVL 238 (888)
T ss_dssp HHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEEC
T ss_pred HHHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECC
T ss_conf 89764487888999888065425341554212576113672885688765567440589746889999999559076048
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHH
Q ss_conf 81899999611699987212899999999974821059999438666669111132302482238502000278578999
Q 002610 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (900)
Q Consensus 244 PevVgV~L~G~L~~gvtakDivL~i~~~Lr~~g~vgk~VEf~G~gv~~Ls~~dR~TIaNMa~E~GAt~g~fp~D~~t~~Y 323 (900)
||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++|
T Consensus 239 PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~Y 318 (888)
T 2b3y_A 239 PQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318 (888)
T ss_dssp CCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHH
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
T ss_conf 97889999704898946568999999996638855559999467325466121010530226549705785683889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 8302998405899999999800012489999-998202799998698410000699999842366442015653115456
Q 002610 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 402 (900)
Q Consensus 324 L~~tgr~~~~~~~~e~y~~~~~l~~~~~~~d-~~a~Y~~~i~iDLs~ieP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~ 402 (900)
|+.|||++++++++|+|++++++|++. .+| ++|.|+++++||||+|+|+||||++|||+++|++++.+|.+++..+++
T Consensus 319 L~~~gr~~~~~~~~e~y~~a~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g 397 (888)
T 2b3y_A 319 LVQTGRDEEKLKYIKKYLQAVGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQG 397 (888)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSB
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 986498467787789999989987534-8887898467999987100557412889933000867722347776521122
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
Q ss_conf 77756750011222100248986422577568998515789998679999999999998569933886219995287999
Q 002610 403 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 482 (900)
Q Consensus 403 ~~~~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V 482 (900)
++|+..........+.++++|.++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 398 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V 477 (888)
T 2b3y_A 398 FKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVV 477 (888)
T ss_dssp TTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHH
T ss_pred CCCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH
T ss_conf 34445320010245124118950223688688999806878985779999999999998669977998539996898999
Q ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHH
Q ss_conf 99999859179998359399435763344798999657886411496278875115777789879877860742958898
Q 002610 483 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 562 (900)
Q Consensus 483 ~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~~~~yLaSP~lVa 562 (900)
+.||+++|++++|+++||.|++||||+||||+++++++++++|.++|+++++|||+||||+||||+..+++|||||++||
T Consensus 478 ~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lva 557 (888)
T 2b3y_A 478 TYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVI 557 (888)
T ss_dssp HHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf 99999839699999769899678874103787887730343320487148999526778676789876555755899999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88761633447778975348999521124589990778887420358102321002225899665555689998532599
Q 002610 563 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 642 (900)
Q Consensus 563 A~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~~~~~~~~i~~~~~~w~~l~~~~~~~~~w~~ 642 (900)
||||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.+++|+|++
T Consensus 558 A~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~ 637 (888)
T 2b3y_A 558 AYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNS 637 (888)
T ss_dssp HHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCT
T ss_pred HHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860731136545865558899830023568863556899872289877444430135775001357788887546688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98644599998878899999986435369853178778685147999999995766988819897677755667786011
Q 002610 643 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 722 (900)
Q Consensus 643 ~styi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~ev 722 (900)
+||||++||||++++..+.+++++.++++|+++|||||||||||||+|+++||||+||+++|+.+++|||||||||||||
T Consensus 638 ~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~v 717 (888)
T 2b3y_A 638 KSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAV 717 (888)
T ss_dssp TCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHH
T ss_conf 76524589986655567888666337579997168766154666766567887899998649985771241223467777
Q ss_pred HCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEE
Q ss_conf 01244332133432128987993110489953321007999986099619991886579984012200022148208993
Q 002610 723 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 802 (900)
Q Consensus 723 m~rg~F~n~r~~N~l~~~~~g~~t~~~p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA 802 (900)
|+||+|+|+|+.|+|++ .+|++|+|+|+|+.|++||++++|+++|+++|||||+|||||||||||||+++++||+||||
T Consensus 718 m~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA 796 (888)
T 2b3y_A 718 MARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLA 796 (888)
T ss_dssp HHHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEE
T ss_pred HHHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 75412233433232344-45872243699862662656898875498569989877788753789999999819329997
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHH
Q ss_conf 41256665210137613311599640310169998179996789755679996599992899799999559999999999
Q 002610 803 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 882 (900)
Q Consensus 803 ~SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~ 882 (900)
+||+||||+||+|||||||+|+++++++++++.+++.++|++.+ .++||+.++++..+|++|++.++++|+.|++|+
T Consensus 797 ~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~ 873 (888)
T 2b3y_A 797 ESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYF 873 (888)
T ss_dssp SCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCEEEEECCC---CCCCCCEEEEEECCCEEEEEEECCCCHHHHHHH
T ss_conf 15989998546655883175066223988545799369997434---568996799993798499999558999999999
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 923999999998741
Q 002610 883 DHGGILQYVIRNLIN 897 (900)
Q Consensus 883 ~aGGiL~yv~~~~~~ 897 (900)
++||+|||+++++++
T Consensus 874 ~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 874 LNGGILNYMIRKMAK 888 (888)
T ss_dssp HHTSHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHC
T ss_conf 819899999997509
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1497.06 Aligned_cols=700 Identities=31% Similarity=0.474 Sum_probs=610.2
Q ss_pred CCHHHHHHHHHHHCCCC------C-CEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 63999999983114999------9-4058412553453068736699989999999999099987437888779993688
Q 002610 59 VKSKDVEKIIDWETTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHS 131 (900)
Q Consensus 59 ~~~~~ie~il~~~~~~~------~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHs 131 (900)
-.+|+.|||++.|.... . +.+|.++||||++||+||++++++|++| |.++ +..|..+++||+
T Consensus 33 ~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~~-------G~~~----v~~P~~~~~DH~ 101 (753)
T 1c96_A 33 RPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISS-------GLPK----VAVPSTIHCDHL 101 (753)
T ss_dssp SCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHHH-------TCSS----CSSCEEEECCSS
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHHH-------CCCC----CCCCCCEECCCC
T ss_conf 89789999999975785444426999789998338988525308999999980-------9998----889876434898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEEEECCCCEEEECCCCCCCCC-EEEECCC
Q ss_conf 877975526699851499999944311133110112466302089986100132010120454279822478-3762389
Q 002610 132 VQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDS 210 (900)
Q Consensus 132 v~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~Hqv~lE~la~~v~~~~G~~~Pd-tivGtDS 210 (900)
+|++..+..+ +..++.+|.|+|+||+|.+++| |++|+|||+||||||++|+ +++|+ ++|||||
T Consensus 102 v~~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDS 165 (753)
T 1c96_A 102 IEAQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDS 165 (753)
T ss_dssp CCBSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESST
T ss_pred CCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCC
T ss_conf 7777776643-----5554365799999999999977-9779899988507370303----------1379967865888
Q ss_pred CCCCCCCCCEEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 87556755304225786899999927907844581899999611699987212899999999974821059999438666
Q 002610 211 HTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMS 290 (900)
Q Consensus 211 HT~~~galG~la~GVGg~ea~aamlg~~~~~~vPevVgV~L~G~L~~gvtakDivL~i~~~Lr~~g~vgk~VEf~G~gv~ 290 (900)
||||+||||+||||||++|++++|+||||||++||||+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|||++
T Consensus 166 HT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~ 245 (753)
T 1c96_A 166 HTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVD 245 (753)
T ss_dssp TGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGG
T ss_pred CCCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77765622431445678999999828865402786899999611698966789999998885328841489999777315
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 66911113230248223850200027857899983029984058999999998000124899999982027999986984
Q 002610 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV 370 (900)
Q Consensus 291 ~Ls~~dR~TIaNMa~E~GAt~g~fp~D~~t~~YL~~tgr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~~i~iDLs~i 370 (900)
+||+++|||||||++|+|||+|+||+|++|++||+.++|++ .++++++|.+ +| .+|++|.|+++++||||+|
T Consensus 246 ~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~l 317 (753)
T 1c96_A 246 SISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSEL 317 (753)
T ss_dssp GSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGC
T ss_pred CCCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCC
T ss_conf 47710023354046653852030057489999998659837-8899999986---43----5899995569999982210
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf 10000699999842366442015653115456777567500112221002489864225775689985157899986799
Q 002610 371 VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVM 450 (900)
Q Consensus 371 eP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~ 450 (900)
+|+||+|++|||+++|+++...+++ ++.+ -+|+|||||||||||++| |
T Consensus 318 eP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~D-l 365 (753)
T 1c96_A 318 KPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYED-M 365 (753)
T ss_dssp CCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHH-H
T ss_pred CEEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHH-H
T ss_conf 0242279997554186885456763--------------------------5886-----415799981578998799-9
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCE
Q ss_conf 99999999998569933886219995287999999998591799983593994357633447989996578864114962
Q 002610 451 LGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDI 530 (900)
Q Consensus 451 ~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~ 530 (900)
.+|+.++|+|+++|++ +.||++|+|||++|+.||+++|++++|+++||.|++|||++||||+++.. ++. .+++
T Consensus 366 ~~AA~ilkga~~~~v~--~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~- 438 (753)
T 1c96_A 366 GRSAAVAKQALAHGLK--CKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN- 438 (753)
T ss_dssp HHHHHHHHHHHTTTCC--CSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE-
T ss_pred HHHHHHHCCHHHCCCC--CCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC-
T ss_conf 9999996057656999--88508996998999999998584999997696995688506236888755--566--7762-
Q ss_pred EEEEEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 78875115777789879-87786074295889888761633447778975348999521124589990778887420358
Q 002610 531 VAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVL 609 (900)
Q Consensus 531 ~~~~V~S~NRNF~GR~g-~~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~ 609 (900)
++|||+||||+|||| ...+.+|||||++||||||+|+|++|+.+||+ .+++|++|||+| |+.+|+++
T Consensus 439 --~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~------- 506 (753)
T 1c96_A 439 --TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR------- 506 (753)
T ss_dssp --EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS-------
T ss_pred --EEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH-------
T ss_conf --278605678444557899872365589999999973976468000535-577897033149--96200046-------
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 1023210022258996655556899-985325999864459999887889999998643536985317877868514799
Q 002610 610 PDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAG 688 (900)
Q Consensus 610 ~~~~~~~~~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPaG 688 (900)
.+|. .++..|+.++.+. +..|.|+++|||++.||+|++. +..++.++++|+++||+||||||||||
T Consensus 507 -~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~~~~~~~vL~klgd~iTTDhIsPAG 573 (753)
T 1c96_A 507 -AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGKDLEDLQILIKVKGKCTTDHISAAG 573 (753)
T ss_dssp -SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSSCEEEEEEEEEBCSCCBHHHHBCCG
T ss_pred -HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf -5426-------786333268998876127528987555679988888-----765533543787326875556605664
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCCCCCCHHHHH
Q ss_conf 999999576698881989767775566778601101244332133432128--98799---3110489953321007999
Q 002610 689 SIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP---KTIHIPTGEKLSVFDAAMR 763 (900)
Q Consensus 689 ~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~--~~~g~---~t~~~p~ge~~~i~daa~~ 763 (900)
+||++ ||+|+|++ .|.|.. +.+++ +|+|+|+++.++++|++++
T Consensus 574 ---------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~ 621 (753)
T 1c96_A 574 ---------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARY 621 (753)
T ss_dssp ---------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHH
T ss_pred ---------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf ---------34301----------------------66554411-33220664345787661477358741365779999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 98609961999188657998401220002214820899341256665210137613311599640310169998179996
Q 002610 764 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 843 (900)
Q Consensus 764 y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id 843 (900)
|+++|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. ++++|.++|+
T Consensus 622 y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~ 699 (753)
T 1c96_A 622 YKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQ 699 (753)
T ss_dssp HHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEE
T ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCEEECCCCHHHH--CCCCCEEEEC
T ss_conf 99737973999557678875267777657874756998643899998545546986366047520632--6899889976
Q ss_pred CCCCCCCCCCCCEEEEE--CCCCE--EEEEEECCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 78975567999659999--28997--999995599999999999239999999987
Q 002610 844 LPSSVSEIRPGQDVRVV--TDSGK--SFTCVIRFDTEVELAYFDHGGILQYVIRNL 895 (900)
Q Consensus 844 ~~~~~~~l~~g~~v~v~--~~~G~--~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 895 (900)
... ++.++..+++. ..+|+ +|.+.++ +|+.|++||++||||||++++.
T Consensus 700 gl~---~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 700 GLK---DFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp CGG---GCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred CHH---HCCCCCEEEEEEEECCCCEEEEEEECC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 867---737896699999916996799999578-9989999998499999999860
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=851.73 Aligned_cols=448 Identities=22% Similarity=0.325 Sum_probs=383.2
Q ss_pred CCCCHHHHHHHHHHCCCCCC---------------CCCCHHHHHHHHHHHCCC---CCCEEEEECCCEEEEECCCCHHHH
Q ss_conf 98981357787421025595---------------676399999998311499---994058412553453068736699
Q 002610 37 DKLPYSIKILLESAIRNCDE---------------FQVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAV 98 (900)
Q Consensus 37 ~~lP~s~rvllEn~lR~~~~---------------~~~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~ 98 (900)
..+||.++-.|-.-.|..-| ....+|++|||++++.+. .+|.+|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCC
Q ss_conf 98999999999909998743788877999368887797552669985149999994431113311011246630208998
Q 002610 99 VDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS 178 (900)
Q Consensus 99 ~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~ 178 (900)
|++++++|.+ ++++.. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CCEEEEEECCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCEEECCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCC
Q ss_conf 61001320101204542798224783-76238987556755304225786899999927907844581899999611699
Q 002610 179 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRD 257 (900)
Q Consensus 179 GI~Hqv~lE~la~~v~~~~G~~~Pdt-ivGtDSHT~~~galG~la~GVGg~ea~aamlg~~~~~~vPevVgV~L~G~L~~ 257 (900)
|||||++. ++++|++ +|||||||||+||+| +|.|+.+++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~-----------~~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLN-----------RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHG-----------GGCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEEC-----------CCCCCCCEEEECCCCCCCCCCCE---ECCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 52103413-----------50204636982798866223532---07627999999970966504797789999702798
Q ss_pred CCCHHHHHHHHHHHHHHCC------------CCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC-HHHHHHH
Q ss_conf 9872128999999999748------------21059999438666669111132302482238502000278-5789998
Q 002610 258 GVTATDLVLTVTQMLRKHG------------VVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 324 (900)
Q Consensus 258 gvtakDivL~i~~~Lr~~g------------~vgk~VEf~G~gv~~Ls~~dR~TIaNMa~E~GAt~g~fp~D-~~t~~YL 324 (900)
|||+|||||+|++.++++| ++||+||| +|+++||+++|+|||||++|+|||+|+||+| ++|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCC-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 30----------2998-----4058999999998000124899999982027999986984-100006999998423664
Q 002610 325 KL----------TGRS-----DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNE 388 (900)
Q Consensus 325 ~~----------tgr~-----~~~~~~~e~y~~~~~l~~~~~~~d~~a~Y~~~i~iDLs~i-eP~vAgP~~P~~~~~l~e 388 (900)
+. +||+ +++++.++.|++++++| .+|++|.|+++++||||+| ||+||+|++|||++++++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHH
T ss_conf 86334333331048752011789999999987416500----36899847899999711377887638998475466255
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 42015653115456777567500112221002489864225775689985157899986799999999999985699338
Q 002610 389 MKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (900)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~ 468 (900)
+++. +|+++|||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred HCCC---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCC
T ss_conf 3303---------------------------------------1016999358899-89999999997------276668
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 86219995287999999998591799983593994357633447989996578864114962788751157777898798
Q 002610 469 PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHP 548 (900)
Q Consensus 469 p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~ 548 (900)
+.|++.|+|||++|+.+|+++|++++|.++||.|.+||||+||||++.+. ++++ ++||+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~~--------~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA--------DGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCCC--------TTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCCC--------CCCE---EEECCCCCCCCCCCC
T ss_conf 99897997989999999998584999997597893785502658388679--------9998---996688687777788
Q ss_pred CCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 7786074295889888761633447778975348999521124589990778887420358102
Q 002610 549 LTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDM 612 (900)
Q Consensus 549 ~~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~ 612 (900)
. ..+|||||++||||||+|+| |+.+|+.+++...++|+.
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~ 838 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAV 838 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHH
T ss_pred C-CCEEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCC
T ss_conf 7-50677799999999967868------------------------988999999986228744
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=355.22 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=216.1
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCHHHHH----HHHHH-C
Q ss_conf 7778987987------786074295889888761633447778975348999521-1245899907788----87420-3
Q 002610 540 RNFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-S 607 (900)
Q Consensus 540 RNF~GR~g~~------~~~~yLaSP~lVaA~AlaG~i~~d~~~~plg~~~~G~~v-~l~diwP~~~ei~----~~~~~-~ 607 (900)
.-|++|+.|. ++++||+|+ |.+++..+.|+++..+++||+...|.+| +|.||| +.+|+. +.++. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 58102321002225899665555689998532599986445999988788999999864353698531787786851479
Q 002610 608 VLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 687 (900)
Q Consensus 608 ~~~~~~~~~~~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vl~~~gD~itTDhIsPa 687 (900)
+..++|.+.|.....||+.|+++ ++.|...+-+..+|+.- ..+++ ++ .+++||||||+||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCCC----------CEEEE-EE-EECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------87311432002588878----------53899-99-965897754030766
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHC
Q ss_conf 99999995766988819897677755667786011012443321334321289879931104899533210079999860
Q 002610 688 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 767 (900)
Q Consensus 688 G~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ge~~~i~daa~~y~~~ 767 (900)
+||..+ . +.+.+.+..|.++|. .+.++ ++.+ .-. +...++++..
T Consensus 186 ----------~~l~~~-~-------------d~~~~a~~lf~~~r~--~~~p~--------f~~~-~~~-~~~i~~~~~~ 229 (865)
T 1l5j_A 186 ----------PDAWSR-P-------------DIPLHALAMLKNARE--GIEPD--------QPGV-VGP-IKQIEALQQK 229 (865)
T ss_dssp ----------GGGGGT-T-------------SHHHHGGGTTCSCBT--TBCCS--------BTTT-BCS-HHHHHHHHTT
T ss_pred ----------HHHHCC-C-------------CHHHHHHHHHHCCCC--CCCCC--------CCCC-CCC-HHHHHHHHCC
T ss_conf ----------563218-9-------------979999997211235--89832--------1233-560-4444565349
Q ss_pred CCCEEEEECCCCCCCCCCHHHHCCC-------------CCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 9961999188657998401220002-------------214820899341256665210137613311599640310169
Q 002610 768 GHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGL 834 (900)
Q Consensus 768 g~~~IIVAG~nyG~GSSRE~Aa~~~-------------~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l 834 (900)
|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++ .+. +
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l 301 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--L 301 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--C
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHHHHHHHHHHCCCCEEEEC----HHH--C
T ss_conf 98-799979835268645889999998715777687464428-859964698999977997699568833----866--4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99817999678975567999659999289979-99995599999999999239999999987410
Q 002610 835 TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 898 (900)
Q Consensus 835 ~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~~ 898 (900)
..++.++||+.+ ++|+ ...+|++ +.+.+ +++++++++++||+++|++++.+..
T Consensus 302 ~~Gd~i~Idl~~--------g~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 302 NMGDVIDVYPYK--------GEVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp CTTCEEEEETTT--------TEEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--------CEEE-ECCCCEEEEEEEE--CCHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 999789998889--------9899-7699859999776--9879999998699666530003799
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=297.00 Aligned_cols=181 Identities=22% Similarity=0.339 Sum_probs=138.8
Q ss_pred CCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 99988788999999864--3536985317877868514799999999576698881989767775566778601101244
Q 002610 650 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 727 (900)
Q Consensus 650 pp~f~~~~~~~~~~~~i--~~a~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~ 727 (900)
.|||+++.......+.+ ..++++.+.|||||||||||| +||+. +++.+ |.+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGGT
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHH-------------HHHHH
T ss_conf 6655873015556888138999999928987784222669----------88673--89878-------------88887
Q ss_pred CCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHH
Q ss_conf 33213343212898799311048995332100799998609961999188657998401220002214820899341256
Q 002610 728 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 807 (900)
Q Consensus 728 F~n~r~~N~l~~~~~g~~t~~~p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~r 807 (900)
|+|+|+.|+ +|.++|. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred HHCCCCCCC--CCCCCCC----------CCCCC-HHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 533402255--8887987----------01151-33058---72899358889997779999999984875899755999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 665210137613311599640310169998179996789755679996599992899799999559999999999923
Q 002610 808 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 808 Ihr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 885 (900)
|||+||+|||+|||+|++++..+.+....+++++||+.. ++|+ ..+| ++.+. + +++..+++.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCEEECHHHHHHHHCCCCCCEEEEECCC--------CEEE--ECCC-EEEEE--C-CHHHHHHHHCC
T ss_conf 999889976997487088999998514999789998889--------9999--7995-49986--8-99999999829
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=293.29 Aligned_cols=157 Identities=31% Similarity=0.507 Sum_probs=127.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEEC
Q ss_conf 69853178778685147999999995766988819897677755667786011012443321334321289879931104
Q 002610 670 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 749 (900)
Q Consensus 670 ~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~~t~~~ 749 (900)
+ +.++|||||||||+|| +||. |.|.+.+.+.+|.++|
T Consensus 6 ~-v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~----------------- 42 (170)
T 2pkp_A 6 R-AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID----------------- 42 (170)
T ss_dssp E-EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------
T ss_pred E-EEECCCCCCHHHCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------
T ss_conf 9-9977998885544727----------7758---------------7998999997566678-----------------
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 89953321007999986099619991886579984012200022148208993412566652101376133115996403
Q 002610 750 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 829 (900)
Q Consensus 750 p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~ 829 (900)
| +.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ +
T Consensus 43 p--------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~ 107 (170)
T 2pkp_A 43 E--------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----T 107 (170)
T ss_dssp T--------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----G
T ss_pred C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----H
T ss_conf 7--------45773788---8789936877898788999999998587399973388999856887799569835----8
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 10169998179996789755679996599992899799999559999999999923999999998741
Q 002610 830 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 897 (900)
Q Consensus 830 ~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 897 (900)
+. +.+++.++|++.. + ++. ...+|.+|++. ..++.+++++++||+|||++++++.
T Consensus 108 ~~--l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 108 DE--IKDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp GG--CCTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HH--CCCCCEEEEECCC-------C-EEE-ECCCCEEEEEE--ECCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 88--6999689998879-------9-999-77998599999--6999999999929999999998776
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=288.13 Aligned_cols=152 Identities=36% Similarity=0.554 Sum_probs=122.7
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 85317877868514799999999576698881989767775566778601101244332133432128987993110489
Q 002610 672 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 751 (900)
Q Consensus 672 l~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~~t~~~p~ 751 (900)
+.++|||||||||+|| +||. |+|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEECCCCCCHHCCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9983998884025437----------7738---------------7998899997677668-----------------6-
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 95332100799998609961999188657998401220002214820899341256665210137613311599640310
Q 002610 752 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 831 (900)
Q Consensus 752 ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~ 831 (900)
+.+.+++. +.|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HH-
T ss_conf -------54773788---8789955867898888999999998598799971388999856887799669823----78-
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 16999817999678975567999659999289979-999955999999999992399999999874
Q 002610 832 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 896 (900)
Q Consensus 832 l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 896 (900)
.+.+++.++|++.. + +++ +|++ |++.. .++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~----~g~~~~~~~~--~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EVR----KGDEILMFEP--LEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EEE----ETTEEEECEE--CCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HCCCCCEEEEECCC-------C-EEE----CCCEEEEEEC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf -82899389998669-------9-898----8918999872--99999999991999999999876
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=273.76 Aligned_cols=161 Identities=25% Similarity=0.455 Sum_probs=126.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCEEE
Q ss_conf 36985317877868514799999999576698881989767775566778601101244332133432128987993110
Q 002610 669 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIH 748 (900)
Q Consensus 669 a~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~~t~~ 748 (900)
.+++ ++|||||||+|+|| +||+. .+.+.+.+.+|.++|
T Consensus 7 g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~---------------- 44 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD---------------- 44 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC----------------
T ss_pred EEEE-EECCCCCHHHCCCH----------HHHCC---------------CCHHHHHHHHCCCCC----------------
T ss_conf 8999-90897656643808----------77086---------------998999975176778----------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 48995332100799998609961999188657998401220002214820899341256665210137613311599640
Q 002610 749 IPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 828 (900)
Q Consensus 749 ~p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~~~~~ 828 (900)
|+ .+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++ +.
T Consensus 45 -p~--------F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~ 110 (176)
T 3vba_A 45 -PD--------FPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GI 110 (176)
T ss_dssp -TT--------HHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--TH
T ss_pred -CC--------HHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECC--HH
T ss_conf -31--------7875478---8889967876288567899999999697499965277899866987699868761--68
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 3101699981799967897556799965999928997999995599999999999239999999987410
Q 002610 829 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINV 898 (900)
Q Consensus 829 ~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~~ 898 (900)
++. +..++.++||+.+ ++|+. ..+|+++.+. . .++.+++++++||++||++++....
T Consensus 111 ~~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~-~-l~~~~~~ii~aGGli~~~k~~~~~~ 167 (176)
T 3vba_A 111 SEK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQ-K-LPEFMMEILEAGGLMPYLKKKMAES 167 (176)
T ss_dssp HHH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECC-C-CCHHHHHHHHHTSHHHHHHHHHHTC
T ss_pred HHH--CCCCCEEEEECCC--------CEEEE-CCCCEEEEEE-C-CCHHHHHHHHCCCHHHHHHHHCCHH
T ss_conf 874--5999889998899--------99996-7898699985-4-9999999999399899999853344
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=256.64 Aligned_cols=166 Identities=24% Similarity=0.351 Sum_probs=123.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64353698531787786851479999999957669888198976777556677860110124433213343212898799
Q 002610 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (900)
Q Consensus 665 ~i~~a~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~ 744 (900)
-+.| +++.+.+|||+||+|+|+ +||+. +++.+| .+++|.++|+.. +|.+.+
T Consensus 9 ~~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~ 59 (203)
T 3q3w_A 9 IHKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVL 59 (203)
T ss_dssp EEEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSB
T ss_pred EEEE-EEEECCCCCCCHHHCCHH----------HHCCC--CCHHHH-------------HHHHHHHHHCCC---CCCCCC
T ss_conf 9999-999888865684015509----------77486--898899-------------886434322135---678778
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 31104899533210079999860996199918865799840122000221482089934125666521013761331159
Q 002610 745 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 824 (900)
Q Consensus 745 ~t~~~p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~ 824 (900)
.| .++.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+||++++
T Consensus 60 ----~p----dF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~ 127 (203)
T 3q3w_A 60 ----NM----DFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELA 127 (203)
T ss_dssp ----CT----TSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECC
T ss_pred ----CC----CHHHCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf ----98----811265-33589---8889969877888767899999998295299978289999978876798759868
Q ss_pred CCCCHHHCC---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 964031016---9998179996789755679996599992899799999559999999999923
Q 002610 825 PGEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 825 ~~~~~~~l~---l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 885 (900)
+........ ...+++++||+.. ++|+ . +|.++.+.. ++...+.+.+|
T Consensus 128 ~~~~~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 128 KDEVLEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHCC
T ss_conf 8999999998623899789998889--------9999--8-999999984---99999999809
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=248.79 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=118.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64353698531787786851479999999957669888198976777556677860110124433213343212898799
Q 002610 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (900)
Q Consensus 665 ~i~~a~vl~~~gD~itTDhIsPaG~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~F~n~r~~N~l~~~~~g~ 744 (900)
-+++ +++.+.|||||||+|+|+ +||+. +++ +.+.+++|.++|..
T Consensus 9 ~~~G-~~~~l~~dnIdTD~IiPa----------~~L~~--~~~-------------~~l~~~~f~~~R~~---------- 52 (171)
T 3h5j_A 9 THSG-IGVPLRRSNVDTDQIIPA----------VFLKR--VTR-------------TGFEDGLFAGWRSD---------- 52 (171)
T ss_dssp EEEE-EEEEECCCSCCHHHHSCG----------GGTTC--CSC-------------SCCGGGTTTTGGGS----------
T ss_pred EEEE-EEEECCCCCCCCCCCCCH----------HHCCC--CCH-------------HHHHHHHHCCCCCC----------
T ss_conf 9999-999866876683017746----------55487--998-------------99988754067679----------
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 31104899533210079999860996199918865799840122000221482089934125666521013761331159
Q 002610 745 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 824 (900)
Q Consensus 745 ~t~~~p~ge~~~i~daa~~y~~~g~~~IIVAG~nyG~GSSRE~Aa~~~~~lGVraVIA~SF~rIhr~Nlin~GiLpL~f~ 824 (900)
|+ ++.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||+++
T Consensus 53 -----p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~ 119 (171)
T 3h5j_A 53 -----PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVA 119 (171)
T ss_dssp -----TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECC
T ss_pred -----CC----CCCCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf -----68----00065-02479---8689968873488677999999998699599988478999868987697539968
Q ss_pred CCCCHHHC---CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 96403101---69998179996789755679996599992899799999559999999999923
Q 002610 825 PGEDAETH---GLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 885 (900)
Q Consensus 825 ~~~~~~~l---~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 885 (900)
+....+.. ....+++++||+.. ++|+ . .|.++.+.. .+...+.+.+|
T Consensus 120 ~~~~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 120 QDDVELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHHC
T ss_conf 8999999998624999689999889--------9999--8-999999998---99999998818
Done!