Query 002611
Match_columns 900
No_of_seqs 392 out of 2064
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 4E-181 9E-186 1581.5 77.9 887 1-900 1-894 (894)
2 PLN00196 alpha-amylase; Provis 100.0 3E-70 6.5E-75 623.2 40.5 391 508-899 24-427 (428)
3 PLN02361 alpha-amylase 100.0 3.4E-69 7.4E-74 608.0 40.7 386 507-899 10-401 (401)
4 PRK10785 maltodextrin glucosid 100.0 1.5E-65 3.1E-70 610.4 30.4 434 393-874 47-559 (598)
5 PRK09441 cytoplasmic alpha-amy 100.0 1.6E-57 3.5E-62 530.4 37.9 348 509-875 4-430 (479)
6 PRK09505 malS alpha-amylase; R 100.0 3.8E-57 8.3E-62 538.2 31.3 360 470-873 190-681 (683)
7 TIGR02456 treS_nterm trehalose 100.0 6.9E-55 1.5E-59 514.7 31.9 354 501-875 2-490 (539)
8 TIGR02403 trehalose_treC alpha 100.0 2E-53 4.4E-58 501.6 29.6 355 501-876 1-502 (543)
9 PRK10933 trehalose-6-phosphate 100.0 4.3E-52 9.4E-57 490.0 31.4 354 501-876 7-508 (551)
10 TIGR02104 pulA_typeI pullulana 100.0 2.1E-48 4.5E-53 464.8 27.5 365 504-893 127-600 (605)
11 TIGR02402 trehalose_TreZ malto 100.0 4.9E-48 1.1E-52 454.8 29.4 341 503-877 92-538 (542)
12 TIGR02100 glgX_debranch glycog 100.0 5.2E-47 1.1E-51 454.8 31.3 319 503-849 154-577 (688)
13 PF00128 Alpha-amylase: Alpha 100.0 1.4E-48 3E-53 426.2 15.9 284 524-825 1-309 (316)
14 PRK14510 putative bifunctional 100.0 1.1E-46 2.3E-51 474.1 33.0 457 345-862 9-595 (1221)
15 PRK12313 glycogen branching en 100.0 3.1E-46 6.8E-51 448.5 34.3 330 505-875 148-561 (633)
16 TIGR01515 branching_enzym alph 100.0 1.3E-46 2.9E-51 449.2 29.7 336 505-876 139-549 (613)
17 PRK03705 glycogen debranching 100.0 1.7E-46 3.7E-51 447.4 29.7 358 502-889 148-631 (658)
18 PRK05402 glycogen branching en 100.0 1E-44 2.2E-49 440.4 33.6 333 505-876 242-658 (726)
19 PRK14706 glycogen branching en 100.0 2.3E-43 4.9E-48 419.9 30.3 338 505-875 145-556 (639)
20 TIGR02102 pullulan_Gpos pullul 100.0 1.3E-42 2.7E-47 427.9 32.8 347 503-875 450-948 (1111)
21 TIGR03852 sucrose_gtfA sucrose 100.0 1.6E-42 3.5E-47 395.5 23.6 330 510-874 3-461 (470)
22 PRK13840 sucrose phosphorylase 100.0 2.7E-41 5.8E-46 387.7 28.5 319 510-863 5-453 (495)
23 PRK12568 glycogen branching en 100.0 1.1E-40 2.4E-45 396.2 33.3 340 503-875 245-662 (730)
24 PLN02960 alpha-amylase 100.0 2.4E-39 5.2E-44 384.6 33.5 336 504-876 395-823 (897)
25 PRK14705 glycogen branching en 100.0 1.7E-39 3.6E-44 402.4 30.2 327 504-875 747-1156(1224)
26 COG0366 AmyA Glycosidases [Car 100.0 3E-40 6.5E-45 386.5 22.2 357 470-875 1-484 (505)
27 TIGR02103 pullul_strch alpha-1 100.0 3.7E-39 8.1E-44 390.7 24.4 360 503-875 251-844 (898)
28 PLN02447 1,4-alpha-glucan-bran 100.0 7.3E-37 1.6E-41 364.2 33.0 333 505-875 230-662 (758)
29 PLN02877 alpha-amylase/limit d 100.0 2.7E-37 5.8E-42 373.4 26.3 348 503-863 338-887 (970)
30 KOG0471 Alpha-amylase [Carbohy 100.0 5.4E-37 1.2E-41 360.6 22.1 371 500-874 13-503 (545)
31 TIGR02455 TreS_stutzeri trehal 100.0 1.7E-35 3.7E-40 340.5 32.0 348 530-898 77-680 (688)
32 COG1523 PulA Type II secretory 100.0 2E-36 4.3E-41 357.8 19.3 324 497-849 164-596 (697)
33 TIGR02401 trehalose_TreY malto 100.0 9E-34 2E-38 339.1 29.4 186 523-708 12-287 (825)
34 PLN02784 alpha-amylase 100.0 5.6E-35 1.2E-39 345.9 15.7 163 47-216 229-394 (894)
35 COG0296 GlgB 1,4-alpha-glucan 100.0 3.6E-33 7.8E-38 325.3 24.1 339 504-878 144-563 (628)
36 PRK14511 maltooligosyl trehalo 100.0 1E-27 2.2E-32 288.2 29.4 98 523-620 16-125 (879)
37 KOG0470 1,4-alpha-glucan branc 100.0 9.3E-29 2E-33 285.4 17.0 164 504-684 229-407 (757)
38 PLN03244 alpha-amylase; Provis 100.0 3.8E-27 8.1E-32 275.9 27.0 280 560-876 427-798 (872)
39 KOG2212 Alpha-amylase [Carbohy 99.9 6.7E-26 1.4E-30 240.3 24.9 334 506-878 26-444 (504)
40 smart00642 Aamy Alpha-amylase 99.9 4.9E-24 1.1E-28 215.1 11.1 93 509-601 1-97 (166)
41 PRK14507 putative bifunctional 99.8 1.1E-18 2.3E-23 222.1 17.9 80 522-601 753-834 (1693)
42 COG3280 TreY Maltooligosyl tre 99.7 5.6E-17 1.2E-21 187.4 15.1 78 525-602 17-96 (889)
43 TIGR01531 glyc_debranch glycog 99.5 4.2E-14 9.2E-19 175.5 8.8 83 523-605 128-216 (1464)
44 PF14872 GHL5: Hypothetical gl 98.9 3.2E-08 7E-13 114.2 16.7 134 522-684 191-393 (811)
45 PF14701 hDGE_amylase: glucano 98.7 4E-08 8.7E-13 111.6 8.2 84 523-606 18-109 (423)
46 PF02324 Glyco_hydro_70: Glyco 98.6 1E-06 2.2E-11 103.0 15.6 202 643-863 140-422 (809)
47 PF02638 DUF187: Glycosyl hydr 98.0 3E-05 6.6E-10 86.4 11.3 141 525-680 17-162 (311)
48 PF14871 GHL6: Hypothetical gl 97.7 0.0003 6.5E-09 68.7 10.8 125 530-680 3-132 (132)
49 PF02324 Glyco_hydro_70: Glyco 97.6 0.00011 2.3E-09 86.6 6.5 77 525-601 585-674 (809)
50 PF07821 Alpha-amyl_C2: Alpha- 97.5 0.00023 5E-09 59.3 6.3 56 842-899 4-59 (59)
51 PRK14508 4-alpha-glucanotransf 97.3 0.013 2.8E-07 69.5 19.4 46 522-567 20-68 (497)
52 smart00810 Alpha-amyl_C2 Alpha 97.2 0.0016 3.5E-08 54.7 7.8 59 841-899 3-61 (61)
53 KOG3625 Alpha amylase [Carbohy 97.2 0.00042 9.2E-09 83.2 5.2 81 524-604 139-227 (1521)
54 COG1649 Uncharacterized protei 97.0 0.0033 7.2E-08 72.0 10.3 142 524-681 61-208 (418)
55 PF11941 DUF3459: Domain of un 96.9 0.0015 3.2E-08 58.9 5.3 47 830-876 1-54 (89)
56 cd06592 GH31_glucosidase_KIAA1 96.6 0.02 4.3E-07 63.8 12.3 134 524-683 27-166 (303)
57 cd06597 GH31_transferase_CtsY 96.5 0.015 3.2E-07 65.9 10.9 147 525-684 22-189 (340)
58 cd06593 GH31_xylosidase_YicI Y 96.4 0.026 5.7E-07 62.9 12.3 140 524-687 21-164 (308)
59 PF02065 Melibiase: Melibiase; 95.9 0.11 2.4E-06 59.9 14.0 138 525-684 56-195 (394)
60 PLN02635 disproportionating en 95.6 0.099 2.1E-06 62.4 12.2 24 574-597 224-247 (538)
61 PLN02316 synthase/transferase 95.5 0.22 4.7E-06 63.7 15.6 96 96-217 140-241 (1036)
62 PLN02316 synthase/transferase 95.4 0.37 8E-06 61.6 17.2 74 311-400 506-581 (1036)
63 PF03423 CBM_25: Carbohydrate 95.3 0.063 1.4E-06 48.7 7.2 66 124-213 21-86 (87)
64 TIGR01531 glyc_debranch glycog 95.1 0.62 1.3E-05 60.6 17.6 194 644-863 474-711 (1464)
65 PF13199 Glyco_hydro_66: Glyco 95.0 0.09 1.9E-06 63.0 9.5 148 524-682 115-268 (559)
66 cd06599 GH31_glycosidase_Aec37 94.9 0.18 4E-06 56.6 11.3 136 526-682 28-168 (317)
67 cd06594 GH31_glucosidase_YihQ 94.8 0.046 1E-06 61.3 6.0 142 524-685 20-169 (317)
68 PF13200 DUF4015: Putative gly 94.5 0.38 8.2E-06 53.9 12.3 133 524-682 10-147 (316)
69 PRK14582 pgaB outer membrane N 93.2 0.61 1.3E-05 57.2 11.8 129 526-680 333-466 (671)
70 cd06591 GH31_xylosidase_XylS X 92.9 0.15 3.4E-06 57.2 5.8 137 524-683 21-160 (319)
71 cd06604 GH31_glucosidase_II_Ma 92.7 0.37 8.1E-06 54.6 8.5 133 525-682 22-159 (339)
72 PRK10426 alpha-glucosidase; Pr 92.7 0.65 1.4E-05 57.1 11.0 132 526-685 220-366 (635)
73 cd06602 GH31_MGAM_SI_GAA This 92.6 0.63 1.4E-05 52.8 10.2 140 525-683 22-166 (339)
74 PF00150 Cellulase: Cellulase 92.0 0.24 5.3E-06 53.5 5.7 80 506-597 4-85 (281)
75 PF02446 Glyco_hydro_77: 4-alp 91.7 0.33 7.1E-06 57.9 6.9 24 574-597 192-215 (496)
76 PF14488 DUF4434: Domain of un 91.7 0.68 1.5E-05 47.2 8.1 69 526-598 19-89 (166)
77 PRK11052 malQ 4-alpha-glucanot 91.3 0.8 1.7E-05 56.7 9.7 24 574-597 355-380 (695)
78 PRK14507 putative bifunctional 91.0 0.51 1.1E-05 63.0 8.0 53 641-693 1036-1090(1693)
79 PRK10658 putative alpha-glucos 90.5 0.57 1.2E-05 57.8 7.4 131 526-685 282-421 (665)
80 PF07745 Glyco_hydro_53: Glyco 90.2 1.1 2.3E-05 50.7 8.6 58 529-599 26-83 (332)
81 cd06600 GH31_MGAM-like This fa 90.0 0.42 9.2E-06 53.7 5.3 135 524-682 21-160 (317)
82 TIGR00217 malQ 4-alpha-glucano 90.0 1.7 3.6E-05 52.1 10.5 24 574-597 212-235 (513)
83 PF01055 Glyco_hydro_31: Glyco 89.9 0.45 9.6E-06 55.8 5.6 136 525-684 41-182 (441)
84 cd06598 GH31_transferase_CtsZ 89.8 0.79 1.7E-05 51.5 7.2 137 525-682 22-164 (317)
85 KOG3625 Alpha amylase [Carbohy 89.1 8 0.00017 48.2 15.0 66 644-711 496-570 (1521)
86 COG3589 Uncharacterized conser 88.4 0.76 1.7E-05 51.1 5.6 60 524-597 13-72 (360)
87 cd06542 GH18_EndoS-like Endo-b 87.3 2.2 4.7E-05 46.1 8.4 65 572-681 49-113 (255)
88 cd06562 GH20_HexA_HexB-like Be 86.4 7.4 0.00016 44.4 12.4 126 525-672 16-149 (348)
89 cd06595 GH31_xylosidase_XylS-l 85.4 1.3 2.9E-05 49.0 5.7 130 524-682 22-159 (292)
90 COG3280 TreY Maltooligosyl tre 84.9 0.93 2E-05 55.1 4.3 71 803-873 709-826 (889)
91 PF02449 Glyco_hydro_42: Beta- 84.2 2.2 4.9E-05 48.9 7.0 121 528-681 11-137 (374)
92 PLN02763 hydrolase, hydrolyzin 82.9 2.2 4.7E-05 54.4 6.6 132 525-681 199-335 (978)
93 COG1501 Alpha-glucosidases, fa 82.8 1.9 4E-05 54.1 5.9 87 576-683 323-416 (772)
94 KOG1065 Maltase glucoamylase a 82.3 8.9 0.00019 47.7 11.2 133 524-681 308-447 (805)
95 COG1640 MalQ 4-alpha-glucanotr 82.2 8.5 0.00018 46.0 10.7 31 774-804 392-422 (520)
96 cd02875 GH18_chitobiase Chitob 81.9 3 6.6E-05 47.7 6.8 31 652-682 92-122 (358)
97 cd06601 GH31_lyase_GLase GLase 80.8 4.2 9E-05 46.1 7.3 110 524-682 21-133 (332)
98 cd06569 GH20_Sm-chitobiase-lik 80.3 5.5 0.00012 47.0 8.3 77 525-601 20-125 (445)
99 PF03198 Glyco_hydro_72: Gluca 80.2 2.6 5.6E-05 47.0 5.2 54 527-601 53-106 (314)
100 cd06589 GH31 The enzymes of gl 79.6 11 0.00023 41.3 9.8 64 524-596 21-88 (265)
101 TIGR01370 cysRS possible cyste 79.5 5.9 0.00013 44.5 7.8 39 645-684 134-172 (315)
102 cd06545 GH18_3CO4_chitinase Th 79.2 9.9 0.00021 41.1 9.4 81 573-698 45-130 (253)
103 cd06568 GH20_SpHex_like A subg 79.0 23 0.0005 40.1 12.5 124 525-670 16-152 (329)
104 PF03423 CBM_25: Carbohydrate 78.9 3 6.6E-05 37.8 4.4 35 363-397 52-86 (87)
105 cd06564 GH20_DspB_LnbB-like Gl 78.6 16 0.00035 41.1 11.2 122 525-672 15-155 (326)
106 cd02871 GH18_chitinase_D-like 76.8 19 0.0004 40.4 11.0 63 572-682 58-120 (312)
107 cd06603 GH31_GANC_GANAB_alpha 76.0 3.2 6.9E-05 47.1 4.6 135 524-682 21-162 (339)
108 cd06570 GH20_chitobiase-like_1 75.6 33 0.00071 38.6 12.4 123 525-669 16-144 (311)
109 cd06563 GH20_chitobiase-like T 75.3 30 0.00064 39.6 12.2 125 525-669 16-162 (357)
110 smart00812 Alpha_L_fucos Alpha 73.6 48 0.001 38.5 13.4 140 530-706 84-235 (384)
111 cd02742 GH20_hexosaminidase Be 70.3 14 0.0003 41.2 7.9 122 525-671 14-147 (303)
112 cd06565 GH20_GcnA-like Glycosy 68.3 16 0.00035 40.8 7.8 112 525-672 15-131 (301)
113 COG3867 Arabinogalactan endo-1 66.6 16 0.00035 40.3 7.0 59 529-596 65-126 (403)
114 PF01301 Glyco_hydro_35: Glyco 66.6 4.9 0.00011 45.3 3.3 60 528-596 25-85 (319)
115 PRK11052 malQ 4-alpha-glucanot 65.9 12 0.00026 46.5 6.7 57 524-580 162-223 (695)
116 PF00724 Oxidored_FMN: NADH:fl 64.7 29 0.00063 39.4 9.1 68 528-603 37-107 (341)
117 PF10566 Glyco_hydro_97: Glyco 64.4 24 0.00052 38.9 8.0 64 522-593 27-92 (273)
118 PRK15452 putative protease; Pr 64.1 37 0.0008 40.2 10.0 53 524-592 11-64 (443)
119 smart00632 Aamy_C Aamy_C domai 64.0 11 0.00023 33.6 4.3 23 854-876 5-28 (81)
120 PF13380 CoA_binding_2: CoA bi 63.6 12 0.00027 35.6 5.0 45 525-593 64-108 (116)
121 PF02446 Glyco_hydro_77: 4-alp 62.2 6.9 0.00015 46.8 3.6 54 524-577 15-71 (496)
122 PLN02950 4-alpha-glucanotransf 62.1 14 0.0003 47.4 6.4 54 524-577 280-339 (909)
123 PLN03236 4-alpha-glucanotransf 62.0 15 0.00032 45.9 6.5 56 522-577 77-139 (745)
124 PF14701 hDGE_amylase: glucano 60.2 13 0.00029 43.3 5.3 54 644-699 361-422 (423)
125 PF14883 GHL13: Hypothetical g 59.2 1.2E+02 0.0027 33.6 12.1 122 529-678 19-142 (294)
126 TIGR03849 arch_ComA phosphosul 59.2 29 0.00063 37.5 7.3 45 532-594 76-120 (237)
127 PF00728 Glyco_hydro_20: Glyco 59.1 12 0.00025 42.4 4.6 136 525-678 16-162 (351)
128 cd06547 GH85_ENGase Endo-beta- 58.9 12 0.00026 42.6 4.6 28 657-684 88-115 (339)
129 cd02857 CD_pullulan_degrading_ 57.4 4.7 0.0001 37.7 0.9 103 345-466 7-114 (116)
130 COG2730 BglC Endoglucanase [Ca 57.2 18 0.00038 42.3 5.8 60 529-595 75-137 (407)
131 PF08821 CGGC: CGGC domain; I 57.0 37 0.0008 32.2 6.8 55 525-592 50-104 (107)
132 PLN02635 disproportionating en 56.3 17 0.00037 43.9 5.5 66 510-576 32-104 (538)
133 PF05913 DUF871: Bacterial pro 55.3 9.4 0.0002 43.7 3.0 59 525-597 12-70 (357)
134 PLN03236 4-alpha-glucanotransf 54.7 28 0.00061 43.6 7.1 24 574-597 274-297 (745)
135 PRK15447 putative protease; Pr 54.7 40 0.00087 37.7 7.8 56 515-592 10-66 (301)
136 TIGR01210 conserved hypothetic 53.5 23 0.0005 39.8 5.7 60 530-597 117-178 (313)
137 PRK07094 biotin synthase; Prov 52.9 19 0.00042 40.3 5.0 63 530-600 129-191 (323)
138 PRK14510 putative bifunctional 52.4 18 0.00039 48.0 5.3 67 510-576 727-800 (1221)
139 PLN02950 4-alpha-glucanotransf 52.4 30 0.00065 44.5 7.0 24 574-597 461-484 (909)
140 TIGR00539 hemN_rel putative ox 52.1 27 0.00059 39.9 6.1 64 530-601 100-164 (360)
141 PF13204 DUF4038: Protein of u 51.8 36 0.00079 37.8 6.9 70 525-598 28-110 (289)
142 PRK08207 coproporphyrinogen II 51.8 24 0.00052 42.2 5.8 62 530-599 269-331 (488)
143 PLN03059 beta-galactosidase; P 51.1 24 0.00052 44.6 5.7 61 527-595 59-119 (840)
144 PRK10076 pyruvate formate lyas 50.3 50 0.0011 35.1 7.3 66 526-592 144-211 (213)
145 cd06546 GH18_CTS3_chitinase GH 48.3 1.5E+02 0.0033 32.2 11.0 48 653-700 93-144 (256)
146 PF02806 Alpha-amylase_C: Alph 48.0 27 0.00059 31.5 4.3 25 852-876 5-33 (95)
147 TIGR00433 bioB biotin syntheta 47.2 40 0.00087 37.1 6.3 60 530-598 123-182 (296)
148 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.0 2.3E+02 0.0049 31.2 12.1 97 528-698 92-189 (275)
149 KOG0496 Beta-galactosidase [Ca 46.6 91 0.002 38.2 9.3 60 529-596 51-110 (649)
150 PF09260 DUF1966: Domain of un 46.6 48 0.001 30.4 5.6 40 851-893 1-43 (91)
151 PRK05628 coproporphyrinogen II 46.4 34 0.00074 39.3 5.8 64 530-601 108-172 (375)
152 PRK06256 biotin synthase; Vali 46.2 27 0.00058 39.4 4.9 60 530-598 152-211 (336)
153 cd02931 ER_like_FMN Enoate red 46.2 1.9E+02 0.0041 33.5 11.9 29 573-603 82-111 (382)
154 PRK08208 coproporphyrinogen II 45.8 29 0.00064 40.7 5.2 64 530-601 141-205 (430)
155 PF02679 ComA: (2R)-phospho-3- 44.8 47 0.001 36.1 6.1 49 529-595 86-134 (244)
156 PRK05660 HemN family oxidoredu 43.5 40 0.00086 38.9 5.8 64 530-601 107-171 (378)
157 PRK13561 putative diguanylate 43.4 35 0.00076 42.0 5.7 71 524-598 531-615 (651)
158 cd02803 OYE_like_FMN_family Ol 41.8 96 0.0021 34.7 8.4 29 573-603 76-104 (327)
159 COG4943 Predicted signal trans 41.5 26 0.00057 41.2 3.8 68 506-596 413-480 (524)
160 PF01212 Beta_elim_lyase: Beta 41.5 24 0.00052 39.2 3.5 24 572-595 143-166 (290)
161 COG2873 MET17 O-acetylhomoseri 40.9 47 0.001 38.1 5.5 60 522-597 111-187 (426)
162 cd02929 TMADH_HD_FMN Trimethyl 40.7 1.8E+02 0.004 33.4 10.6 29 573-603 82-110 (370)
163 PF11852 DUF3372: Domain of un 40.6 24 0.00053 36.1 3.0 51 827-877 43-117 (168)
164 PRK13347 coproporphyrinogen II 40.0 42 0.0009 39.7 5.3 63 530-600 152-215 (453)
165 TIGR03356 BGL beta-galactosida 39.1 66 0.0014 37.8 6.8 57 526-595 53-115 (427)
166 cd04734 OYE_like_3_FMN Old yel 38.9 4.4E+02 0.0096 30.0 13.2 68 528-603 34-104 (343)
167 cd04735 OYE_like_4_FMN Old yel 38.5 1.8E+02 0.0039 33.2 10.0 29 573-603 77-105 (353)
168 PRK10060 RNase II stability mo 38.3 24 0.00052 43.7 3.1 74 524-598 538-622 (663)
169 PF01120 Alpha_L_fucos: Alpha- 38.3 34 0.00073 39.0 4.1 148 529-708 93-247 (346)
170 PRK08446 coproporphyrinogen II 38.1 56 0.0012 37.2 5.9 63 530-600 98-161 (350)
171 PRK05904 coproporphyrinogen II 38.0 49 0.0011 37.9 5.3 63 530-600 103-166 (353)
172 PRK13210 putative L-xylulose 5 37.9 64 0.0014 35.0 6.1 54 528-592 17-70 (284)
173 TIGR00538 hemN oxygen-independ 37.8 50 0.0011 39.0 5.6 64 530-601 151-215 (455)
174 COG1306 Uncharacterized conser 37.7 1.4E+02 0.003 33.4 8.2 135 525-682 75-219 (400)
175 cd07944 DRE_TIM_HOA_like 4-hyd 37.4 2.7E+02 0.0059 30.5 10.8 102 530-707 85-191 (266)
176 cd04733 OYE_like_2_FMN Old yel 37.0 3.2E+02 0.007 30.9 11.7 29 573-603 81-109 (338)
177 COG2342 Predicted extracellula 36.3 4.2E+02 0.0091 29.5 11.6 123 526-684 29-151 (300)
178 PRK05939 hypothetical protein; 35.9 92 0.002 36.2 7.2 62 535-597 105-171 (397)
179 cd05014 SIS_Kpsf KpsF-like pro 35.7 92 0.002 29.3 6.1 59 534-592 20-79 (128)
180 cd04747 OYE_like_5_FMN Old yel 35.5 3.6E+02 0.0078 31.1 11.8 29 573-603 77-105 (361)
181 smart00052 EAL Putative diguan 35.2 30 0.00066 36.1 2.9 75 524-599 130-215 (241)
182 cd00598 GH18_chitinase-like Th 34.9 1.5E+02 0.0032 30.5 8.0 31 652-682 84-114 (210)
183 PRK09249 coproporphyrinogen II 34.6 70 0.0015 37.8 6.1 64 530-601 151-215 (453)
184 PTZ00445 p36-lilke protein; Pr 34.5 88 0.0019 33.4 6.0 62 528-592 30-96 (219)
185 PRK08114 cystathionine beta-ly 34.4 54 0.0012 38.2 4.9 73 522-597 111-189 (395)
186 PRK08195 4-hyroxy-2-oxovalerat 34.3 2.9E+02 0.0063 31.5 10.7 102 531-708 92-198 (337)
187 TIGR03471 HpnJ hopanoid biosyn 33.8 65 0.0014 38.2 5.7 60 530-597 287-346 (472)
188 cd01335 Radical_SAM Radical SA 33.0 57 0.0012 32.3 4.4 63 530-599 88-150 (204)
189 PRK10605 N-ethylmaleimide redu 33.0 5E+02 0.011 29.8 12.5 29 573-603 78-106 (362)
190 PRK01060 endonuclease IV; Prov 32.9 93 0.002 33.8 6.4 52 527-590 12-63 (281)
191 PRK08599 coproporphyrinogen II 32.6 75 0.0016 36.5 5.8 64 530-601 100-164 (377)
192 PRK07379 coproporphyrinogen II 32.3 71 0.0015 37.2 5.5 63 530-600 115-178 (400)
193 cd07943 DRE_TIM_HOA 4-hydroxy- 32.3 2.3E+02 0.005 30.8 9.3 39 658-697 141-180 (263)
194 PF01373 Glyco_hydro_14: Glyco 32.2 46 0.001 38.6 3.9 66 523-601 12-80 (402)
195 COG0041 PurE Phosphoribosylcar 31.8 1.3E+02 0.0028 30.4 6.3 52 524-594 13-64 (162)
196 PLN02803 beta-amylase 31.8 1.2E+02 0.0026 36.5 7.1 63 527-602 107-172 (548)
197 TIGR03586 PseI pseudaminic aci 31.1 1.2E+02 0.0026 34.5 6.9 71 522-592 12-95 (327)
198 PRK06294 coproporphyrinogen II 30.8 81 0.0018 36.3 5.6 64 530-601 103-167 (370)
199 PRK05967 cystathionine beta-ly 30.6 69 0.0015 37.3 5.0 29 570-598 162-190 (395)
200 PF07071 DUF1341: Protein of u 30.5 1.3E+02 0.0028 31.8 6.3 44 529-590 137-180 (218)
201 TIGR01211 ELP3 histone acetylt 30.5 80 0.0017 38.2 5.7 63 530-600 206-268 (522)
202 KOG2499 Beta-N-acetylhexosamin 30.4 2.2E+02 0.0047 34.0 8.7 30 572-601 248-278 (542)
203 cd03412 CbiK_N Anaerobic cobal 30.0 71 0.0015 30.9 4.3 60 526-585 55-125 (127)
204 cd00609 AAT_like Aspartate ami 29.0 1E+02 0.0022 33.8 5.9 54 531-598 123-176 (350)
205 TIGR03217 4OH_2_O_val_ald 4-hy 28.8 4.3E+02 0.0093 30.1 10.9 103 530-708 90-197 (333)
206 PRK09856 fructoselysine 3-epim 28.2 1.4E+02 0.0029 32.4 6.6 51 528-591 14-64 (275)
207 cd00287 ribokinase_pfkB_like r 28.0 91 0.002 31.3 4.9 51 534-597 44-94 (196)
208 KOG0259 Tyrosine aminotransfer 27.9 1.2E+02 0.0027 34.9 6.1 79 523-601 133-246 (447)
209 COG0826 Collagenase and relate 27.8 1.6E+02 0.0034 33.8 7.2 55 530-595 16-70 (347)
210 PLN02389 biotin synthase 27.8 1.3E+02 0.0028 34.9 6.5 60 530-598 178-237 (379)
211 PF03714 PUD: Bacterial pullan 27.6 1E+02 0.0023 28.6 4.8 37 175-215 46-82 (103)
212 COG2200 Rtn c-di-GMP phosphodi 27.6 90 0.002 33.9 5.0 69 524-598 133-217 (256)
213 PRK06582 coproporphyrinogen II 26.7 1.1E+02 0.0023 35.6 5.7 64 530-601 111-174 (390)
214 TIGR00542 hxl6Piso_put hexulos 26.3 1.3E+02 0.0028 32.8 6.0 53 528-591 17-69 (279)
215 cd02932 OYE_YqiM_FMN Old yello 26.3 5.7E+02 0.012 28.8 11.4 68 529-603 35-104 (336)
216 PRK09936 hypothetical protein; 26.1 2E+02 0.0044 32.1 7.3 58 526-597 37-95 (296)
217 PRK10551 phage resistance prot 25.9 1.2E+02 0.0025 36.7 6.0 65 528-598 398-478 (518)
218 smart00729 Elp3 Elongator prot 25.8 1.3E+02 0.0029 30.1 5.7 62 530-599 100-162 (216)
219 PRK09997 hydroxypyruvate isome 25.6 1.8E+02 0.0039 31.3 6.9 20 529-548 17-36 (258)
220 cd01948 EAL EAL domain. This d 25.4 59 0.0013 33.9 3.0 74 525-599 130-214 (240)
221 PRK09776 putative diguanylate 25.2 82 0.0018 41.1 4.9 70 524-599 971-1056(1092)
222 PRK11059 regulatory protein Cs 24.8 83 0.0018 38.8 4.7 75 524-599 530-615 (640)
223 PRK12928 lipoyl synthase; Prov 24.7 2.6E+02 0.0056 31.2 8.0 67 523-597 215-281 (290)
224 PRK09057 coproporphyrinogen II 24.5 1.2E+02 0.0025 35.1 5.5 62 531-600 105-166 (380)
225 TIGR02666 moaA molybdenum cofa 24.5 1.7E+02 0.0036 32.9 6.7 60 530-596 102-162 (334)
226 PRK05799 coproporphyrinogen II 24.3 1.2E+02 0.0026 34.7 5.6 63 530-600 99-162 (374)
227 PLN02801 beta-amylase 24.2 2.1E+02 0.0045 34.3 7.3 65 525-602 35-102 (517)
228 PRK13125 trpA tryptophan synth 23.6 1.7E+02 0.0038 31.5 6.3 52 527-597 88-139 (244)
229 PRK13384 delta-aminolevulinic 23.6 3.6E+02 0.0079 30.4 8.6 120 526-696 60-181 (322)
230 PRK11359 cyclic-di-GMP phospho 23.5 63 0.0014 40.5 3.3 75 524-599 675-760 (799)
231 COG0520 csdA Selenocysteine ly 23.3 71 0.0015 37.3 3.4 61 534-595 130-200 (405)
232 PRK00164 moaA molybdenum cofac 23.3 1.8E+02 0.0038 32.7 6.5 60 529-596 107-167 (331)
233 TIGR00510 lipA lipoate synthas 23.3 2.9E+02 0.0064 31.0 8.1 66 523-596 218-283 (302)
234 PF09081 DUF1921: Domain of un 23.2 2.2E+02 0.0049 23.0 4.9 41 858-898 6-51 (51)
235 cd04724 Tryptophan_synthase_al 23.1 1.6E+02 0.0036 31.7 6.0 49 528-598 92-140 (242)
236 PLN00197 beta-amylase; Provisi 23.0 2.3E+02 0.0049 34.4 7.3 64 525-601 125-191 (573)
237 TIGR03234 OH-pyruv-isom hydrox 22.9 2.2E+02 0.0048 30.4 6.9 19 529-547 16-34 (254)
238 PRK05613 O-acetylhomoserine am 22.7 1.3E+02 0.0027 35.6 5.4 64 534-598 127-196 (437)
239 cd07940 DRE_TIM_IPMS 2-isoprop 22.4 3.5E+02 0.0075 29.5 8.4 38 658-696 143-181 (268)
240 PF01791 DeoC: DeoC/LacD famil 22.2 69 0.0015 34.2 2.9 57 530-598 79-136 (236)
241 TIGR00262 trpA tryptophan synt 22.2 2.1E+02 0.0044 31.3 6.5 49 528-598 103-151 (256)
242 TIGR03127 RuMP_HxlB 6-phospho 22.1 2.3E+02 0.0051 28.6 6.6 55 534-592 50-104 (179)
243 TIGR03235 DNA_S_dndA cysteine 22.0 1.7E+02 0.0036 32.9 6.0 30 566-595 147-176 (353)
244 PF10438 Cyc-maltodext_C: Cycl 22.0 1.4E+02 0.0031 26.6 4.3 22 854-875 7-31 (78)
245 PRK01278 argD acetylornithine 22.0 1.9E+02 0.0042 32.9 6.7 58 525-599 164-221 (389)
246 KOG4175 Tryptophan synthase al 21.9 2.1E+02 0.0046 30.2 6.0 70 522-599 75-160 (268)
247 PF00682 HMGL-like: HMGL-like 21.9 3.8E+02 0.0082 28.3 8.5 103 526-696 66-175 (237)
248 PRK08898 coproporphyrinogen II 21.9 1.3E+02 0.0029 34.8 5.3 64 530-601 122-185 (394)
249 PLN02651 cysteine desulfurase 21.9 1.8E+02 0.0038 33.0 6.2 32 565-596 146-177 (364)
250 PLN02905 beta-amylase 21.9 2.4E+02 0.0051 34.7 7.2 66 524-602 283-351 (702)
251 TIGR02006 IscS cysteine desulf 21.7 1.7E+02 0.0037 33.6 6.2 67 529-596 105-181 (402)
252 PF13407 Peripla_BP_4: Peripla 21.6 2.1E+02 0.0045 30.1 6.4 48 523-592 38-85 (257)
253 smart00518 AP2Ec AP endonuclea 21.4 2.3E+02 0.005 30.5 6.8 53 528-592 11-63 (273)
254 TIGR03581 EF_0839 conserved hy 21.2 1.8E+02 0.0039 31.1 5.4 44 528-589 136-179 (236)
255 COG1242 Predicted Fe-S oxidore 21.1 3.1E+02 0.0067 30.6 7.3 54 573-681 167-220 (312)
256 cd06450 DOPA_deC_like DOPA dec 20.8 1.5E+02 0.0033 32.8 5.4 29 570-598 161-189 (345)
257 PRK05692 hydroxymethylglutaryl 20.7 4E+02 0.0086 29.6 8.5 73 574-696 120-193 (287)
258 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.7 1.9E+02 0.0041 27.1 5.3 61 531-592 16-78 (126)
259 PLN02161 beta-amylase 20.6 2.8E+02 0.006 33.3 7.4 64 525-601 115-181 (531)
260 PTZ00413 lipoate synthase; Pro 20.5 3.1E+02 0.0067 31.9 7.6 67 523-597 306-372 (398)
261 PRK09028 cystathionine beta-ly 20.3 1.2E+02 0.0026 35.3 4.5 28 570-597 159-186 (394)
262 PF12031 DUF3518: Domain of un 20.2 31 0.00068 37.3 -0.3 46 303-350 93-147 (257)
263 COG1874 LacA Beta-galactosidas 20.1 1.4E+02 0.0031 37.1 5.2 57 527-596 30-90 (673)
264 COG0821 gcpE 1-hydroxy-2-methy 20.1 2.5E+02 0.0054 32.0 6.5 83 507-592 19-128 (361)
265 PF01229 Glyco_hydro_39: Glyco 20.0 1.6E+02 0.0034 35.3 5.5 62 527-598 39-108 (486)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=4e-181 Score=1581.48 Aligned_cols=887 Identities=73% Similarity=1.262 Sum_probs=829.4
Q ss_pred CcceeccccchhhhhccCCCCCCCccccccccceeccccCCCcccccccccccceecccCCCCCCCCCCCCCCCC---CC
Q 002611 1 MSTVTIRPLLPSYRRANLNFRDRTNILLKPNYINYSIKSAPNARRFCSFKKLQKITVSSSTSTSTSPATSTDTTP---VR 77 (900)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (900)
||||||||||+||||+++.++++++ .+|+||||++++|+||++||||+....+.-. ..++++++|++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (894)
T PLN02784 1 MSTVCIESLLHHSGLEKNSKIGRGK--RSPSSLNLSLKSLTNGKSFCNFKMSVGVSST------TRRASSSDTALVETAQ 72 (894)
T ss_pred CCceeeHHHHhHHhhccccccCccc--ccccccccccccccCCcccccccCCCCcccc------cccccccceeeeeccc
Confidence 9999999999999999999977433 3499999999999999999999875544222 12467777877 56
Q ss_pred CCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccc
Q 002611 78 PGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKD 157 (900)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~ 157 (900)
..+++|+|+|++.++|+|||+|+|+|+ +++++|++|+|+||+|++|||||||++.+++++||++||++||||||+.+++
T Consensus 73 ~~~v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~ 151 (894)
T PLN02784 73 SDDVFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKD 151 (894)
T ss_pred cccceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecC
Confidence 889999999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCcccccCCCccccccccccCcchH
Q 002611 158 YAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGAL 237 (900)
Q Consensus 158 ~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~~~~~~~~~~~~~~~~w~~~~ 237 (900)
+||||||++++.|+..+++.|+|+++++++||+||||++++|+||||||+|||||||++++++.+++|+++++.+|||.|
T Consensus 152 ~A~eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l 231 (894)
T PLN02784 152 YAIETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGAL 231 (894)
T ss_pred eEEeccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCcc
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCcccccccccccchhhhcccccchhhhhccceeEEEEeecCCCCceEEEEEcCCCCCeEE
Q 002611 238 GQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVV 317 (900)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~~~~~~~~~~~~v~~~td~~~~~vl 317 (900)
++||++++|+|+++++.+++++.+.++.+..++|++||||+||+|++.++|++.|+||||++++|++|||+||+|+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvl 311 (894)
T PLN02784 232 GQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVV 311 (894)
T ss_pred ccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEE
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecCCCCCcccCCCCCCCCcceeechhhcccCcccCCCCcceeEEEecCccceeEEEEEeCCccccccCCcceEEeC
Q 002611 318 HWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (900)
Q Consensus 318 HWgv~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tpf~~~~~~~~~~~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~i~l 397 (900)
||||||++++||++||++++|+||+++++||||||++.+++.++++.|+|+.+|.||+|||++++++||||+|+||||||
T Consensus 312 HWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl 391 (894)
T PLN02784 312 HWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPL 391 (894)
T ss_pred EeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999966899999999999999
Q ss_pred CCCCCCCC---cccccccccCCCcccccccccchhhhhHHHHHhhcccCcccchhccccchhhhhhhhHHHHhhhhhhhh
Q 002611 398 TSSSCLPA---ESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYS 474 (900)
Q Consensus 398 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~q~tv~~~~~~~~a~~yq 474 (900)
..+++.++ +.|+|.. ...++++++..+|+++||++||++++|++|+++++++.++.|..+.+|++++.+++|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (894)
T PLN02784 392 LTSSSLPTQTEQGQSEGK----TAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYS 467 (894)
T ss_pred Cchhcccccccccccccc----cccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhhe
Confidence 99988776 4455543 5677889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcccccccc-CCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC
Q 002611 475 IFRTTAPTFFEEAAVELE-ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV 553 (900)
Q Consensus 475 iF~~~~drF~~~~~~~~p-~~~~~~r~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~ 553 (900)
||+..+|.|.+.++.+++ ..+|+.....+...+|++++|+|.|+++.+|+++++|+++|+||++||||+|||+|++++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~ 547 (894)
T PLN02784 468 IFRSTIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV 547 (894)
T ss_pred eeccCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 999999999999998877 3667777888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCC
Q 002611 554 SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 633 (900)
Q Consensus 554 s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~ 633 (900)
++|||+|.|||.+|++|||.+||++||++||++||+||+|+|+||++..+...+|.|+.|.+.++|.+..+..+.+.|.+
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G 627 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 627 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999887666788888888889988777777778888
Q ss_pred CCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHHhcCCceEEeecccCCCccc
Q 002611 634 RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY 713 (900)
Q Consensus 634 ~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~~p~~liGEvw~~~~~l~ 713 (900)
.++++++..|.++||||+.||+||++|.+|++||++++||||||||+|++++..|+++++++.+|.|+|||+|++.+|.+
T Consensus 628 rG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~ 707 (894)
T PLN02784 628 RGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY 707 (894)
T ss_pred cCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEecccccccc
Confidence 78888888899999999999999999999999999899999999999999999999999999988899999999987777
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCccc
Q 002611 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG 793 (900)
Q Consensus 714 g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~s 793 (900)
++|+|+++.+++.+.+|++..++..++|||++++.|++++.++++|++.+..++..++.+.+|..+|+|++||||.+.+.
T Consensus 708 g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~ 787 (894)
T PLN02784 708 GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG 787 (894)
T ss_pred CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc
Confidence 89999999999999999998888889999999999999998888899988887888999999999999999999999888
Q ss_pred CCCCChHHHHHHHHHHHhCCCeeeeeCCChhHHHHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEEECCEEEEEEeC
Q 002611 794 HWRFPGGREMQGYAYILTHPGTPSVFYDHIFSHYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP 873 (900)
Q Consensus 794 ~~~~~~~~~klA~allltlPGiP~IYyGdEf~Wl~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlVviNn 873 (900)
.+.++..+..+|||+|||.||+|||||||.|+.+.+.|++||.+||+.-..++..++++.++.++|+...+++++|.|++
T Consensus 788 ~w~~p~~k~~~AYAyILthpG~PcVFy~h~y~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~ 867 (894)
T PLN02784 788 HWRFPEGKEMQGYAYILTHPGTPAVFYDHIFSHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGP 867 (894)
T ss_pred cCCCCccchhhHHHHHHcCCCcceEEehhhhhhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECC
Confidence 87777778899999999999999999999985578889999999999999899999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEEEcCCCeEEEEcC
Q 002611 874 GHYEPPSGSQNWSFVTEGRDYKVWEAA 900 (900)
Q Consensus 874 ~~~~~~~g~~~~~~~~~g~~~~vw~~~ 900 (900)
.+..|+.++.+|.++++|.+|+||++|
T Consensus 868 ~~~~p~~~~~~~~~~~sG~~yavW~k~ 894 (894)
T PLN02784 868 GHYEPPNGPQNWSVALEGQDYKVWETS 894 (894)
T ss_pred cccCCCCCCCceEEEEecCCeEEEeCC
Confidence 988875566689999999999999986
No 2
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3e-70 Score=623.20 Aligned_cols=391 Identities=46% Similarity=0.946 Sum_probs=334.2
Q ss_pred ceeeeecccccC-CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcC-CCCCCHHHHHHHHHHHHH
Q 002611 508 FEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFHD 585 (900)
Q Consensus 508 y~i~~~~F~Wd~-~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~ID-p~lGt~edfk~LV~~AH~ 585 (900)
.++++|+|.|++ +..||+++||++|||||++||||+|||+|++++.++|||++.||++|| ++|||.+||++||++||+
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~ 103 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHG 103 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHH
Confidence 468999999997 456899999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCEEEEEeccCccccCCCCCCCCCccCCC-----CCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCCcCCCChHHHHH
Q 002611 586 VGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (900)
Q Consensus 586 ~GIrVILD~V~NHt~~d~~~~~g~~~~y~g-----~~~W~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdLN~~np~Vr~~ 659 (900)
+||+||+|+|+||++.++....+.|..|.+ ..+|+......+...|. +.+++.+++++.++||||++||+||++
T Consensus 104 ~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~ 183 (428)
T PLN00196 104 KGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRE 183 (428)
T ss_pred CCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHH
Confidence 999999999999999887654444433322 24565433322222332 345667788899999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEecccccccchhHHHHHHhcCCceEEeecccCCCc-ccccCCCCchHHHHHHHHHHhhcCCC-
Q 002611 660 IKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSY-TYGEMDHNQDAHRQRIIDWINAASGT- 737 (900)
Q Consensus 660 i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~~p~~liGEvw~~~~~-l~g~m~y~~~~~~~~i~~~l~~~~~~- 737 (900)
|+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||+|++.+| ..++..|+++.+++.+.+|+...++.
T Consensus 184 l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~ 263 (428)
T PLN00196 184 LIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAA 263 (428)
T ss_pred HHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCcc
Confidence 9999999988899999999999999999999999888888999999998655 35678899888899999999866543
Q ss_pred --cccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCe
Q 002611 738 --AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGT 815 (900)
Q Consensus 738 --~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGi 815 (900)
.++|||++...+..++. ++.+++.+......++.+.+|..+|||++||||.|+++.+.....+.++|+|+|||+||+
T Consensus 264 ~~~~~fDF~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 264 SPATVFDFTTKGILNVAVE-GELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred CcceeecccchHHHHHHhc-CCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 35899999876666654 356676666555566788899999999999999999998876777889999999999999
Q ss_pred eeeeCCChhHH-HHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCe
Q 002611 816 PSVFYDHIFSH-YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDY 894 (900)
Q Consensus 816 P~IYyGdEf~W-l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlVviNn~~~~~~~g~~~~~~~~~g~~~ 894 (900)
||||||+-|+| +.+.|++|+++||++++++.|+++++.+++++|++.|+++++|+||+.-....-.+.+|+++++|.+|
T Consensus 343 P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~ 422 (428)
T PLN00196 343 PCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPEGFQVVAHGNGY 422 (428)
T ss_pred ceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcccceEEEecCCe
Confidence 99999999999 99999999999999999999999999999999999999999999999633321112459999999999
Q ss_pred EEEEc
Q 002611 895 KVWEA 899 (900)
Q Consensus 895 ~vw~~ 899 (900)
+||++
T Consensus 423 ~~w~~ 427 (428)
T PLN00196 423 AVWEK 427 (428)
T ss_pred EEEec
Confidence 99986
No 3
>PLN02361 alpha-amylase
Probab=100.00 E-value=3.4e-69 Score=607.97 Aligned_cols=386 Identities=52% Similarity=1.063 Sum_probs=343.5
Q ss_pred CceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHc
Q 002611 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (900)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~ 586 (900)
+.++++|+|+|+++. +.++++|+++|+||++||||+|||+|++++.++|||++.||+++||+|||++||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 357999999999874 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCccccCCCCCCCCCccCCCC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHH
Q 002611 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (900)
Q Consensus 587 GIrVILD~V~NHt~~d~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~ 665 (900)
||+||+|+|+||++.......+.|+.|.+. .+|+...+..+. .+.+++..++.+.++||||++||+||++|+++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 999999999999977666667777777663 567644332221 2234456677889999999999999999999999
Q ss_pred HHHHHhCCCeEEecccccccchhHHHHHHhcCCceEEeecccCCCcc--cccCCCCchHHHHHHHHHHhhcCCCcccccc
Q 002611 666 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 743 (900)
Q Consensus 666 ~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~~p~~liGEvw~~~~~l--~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf 743 (900)
||++++||||||+|+|++++.+|+++++++.+|.|+|||+|++..+. ++.++|+++.+++.+.+|+...++..++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88867999999999999999999999999988889999999875432 4559999999999999999987788899999
Q ss_pred hhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeeeeCCCh
Q 002611 744 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHI 823 (900)
Q Consensus 744 ~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYyGdE 823 (900)
++...+++++ .++++++.+..++.+.+.+.+|..+|+|++||||+|+++.+.++..+.++|+|+|||+||+||||||+-
T Consensus 246 ~l~~~l~~a~-~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 246 TTKGILQEAV-KGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred HHHHHHHHHH-hhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 9999999998 456788888777677788889999999999999999999888778899999999999999999999999
Q ss_pred hHH---HHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEEc
Q 002611 824 FSH---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 899 (900)
Q Consensus 824 f~W---l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlVviNn~~~~~~~g~~~~~~~~~g~~~~vw~~ 899 (900)
|+| +.+.|++|+.|||+++++++|.+.++.+++++|+...+++++|-++.....| .+ .+|+++++|.+|+||++
T Consensus 325 ~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p-~~-~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 325 YDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCP-SG-REWTLATSGHRYAVWHK 401 (401)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCC-CC-CCceEEEecCceEEeeC
Confidence 998 8999999999999999999999999999999999999999999999998777 43 35999999999999986
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.5e-65 Score=610.45 Aligned_cols=434 Identities=16% Similarity=0.207 Sum_probs=307.8
Q ss_pred eEEeCCCCCCCCCcccccccccCCCcccccccccchhhhhHHHHHhhcccCcccch-hccccchhhhhhhhHHHHhhh--
Q 002611 393 FYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDI-SRKTKSKEAQKSILLEIEKLA-- 469 (900)
Q Consensus 393 f~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~q~tv~~~~~~~~-- 469 (900)
-.++|...+.. +..+.|.+ +..........+|+|.++.+-....-+..+.. ....+...||.+++ .+.|
T Consensus 47 ~~~~m~~~~~~---~~~~~~~~--~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~---~~~P~W 118 (598)
T PRK10785 47 YLLPMEKQRSQ---PQVTAWRA--SLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSRRPPARLEQFAVDVP---DQGPQW 118 (598)
T ss_pred EEEEeEEeecC---CCceEEEE--EEEcCCCCceEEEEEEEEeCCEEEEEcCCceeeccCCCccceEeeCC---CCCCch
Confidence 36788766554 23345654 44443345678898988532222222222211 11123356787765 3444
Q ss_pred ---hhhhhcccccccccCcccccccc-CC--------CC-CCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHH
Q 002611 470 ---AEAYSIFRTTAPTFFEEAAVELE-ES--------KP-PAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATEL 536 (900)
Q Consensus 470 ---a~~yqiF~~~~drF~~~~~~~~p-~~--------~~-~~r~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYL 536 (900)
+|+||||| |||++++..+.+ .. .+ ....|. ....+......| +||||+||++|||||
T Consensus 119 ~~~~v~YqIfp---DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~f------~GGDl~GI~~kLdYL 188 (598)
T PRK10785 119 VADQVFYQIFP---DRFARSLPREAVQDHVYYHHAAGQEIILRDWD-EPVTAQAGGSTF------YGGDLDGISEKLPYL 188 (598)
T ss_pred hhcCEEEEech---hhhcCCCcccCccCCceeeccCCCcccccCcC-CCcccccccccc------cCcCHHHHHHHHHHH
Confidence 99999999 999965442211 00 00 001121 111112222223 499999999999999
Q ss_pred HHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCC-------CC
Q 002611 537 SSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN-------GV 609 (900)
Q Consensus 537 k~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~-------g~ 609 (900)
|+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||||.+|+++. |.
T Consensus 189 ~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga 268 (598)
T PRK10785 189 KKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGA 268 (598)
T ss_pred HHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987532 11
Q ss_pred C----ccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHH----HHHHHHHH-hCCCeEEecc
Q 002611 610 W----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDF 680 (900)
Q Consensus 610 ~----~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~----vl~~W~~e-~GIDGfRlD~ 680 (900)
+ ++| .+|+ .|...+.+.+|+++..||+||++||+||++|++ ++++|+++ +||||||||+
T Consensus 269 ~~~~~spy---~dwf---------~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDv 336 (598)
T PRK10785 269 CHHPDSPW---RDWY---------SFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDV 336 (598)
T ss_pred ccCCCCCc---ceee---------EECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEec
Confidence 1 112 2333 233344567788889999999999999999995 89999975 8999999999
Q ss_pred ccccc--------chhHHHHHHh---cCCc-eEEeecccCC-Ccc-----cccCCCCchHHHHHHHHHHhhcCCCccccc
Q 002611 681 VRGFW--------GGYVKDYLEA---TEPY-FAVGEYWDSL-SYT-----YGEMDHNQDAHRQRIIDWINAASGTAGAFD 742 (900)
Q Consensus 681 a~~l~--------~~f~~~~~~~---~~p~-~liGEvw~~~-~~l-----~g~m~y~~~~~~~~i~~~l~~~~~~~s~fd 742 (900)
|++++ .+||+++.++ .+|+ ++|||+|+++ .|+ ++.|+|.. +...++.|+...........
T Consensus 337 a~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~~--f~~~~~~~~~~~~~~~~~~~ 414 (598)
T PRK10785 337 VHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYRG--FAFPLRAFLANTDIAYHPQQ 414 (598)
T ss_pred HhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccchh--hhhHHHHHhhccccccCccC
Confidence 99885 3688887554 4677 7999999864 232 35577732 34456666643210000000
Q ss_pred chhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC----cceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeee
Q 002611 743 VTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS----RAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSV 818 (900)
Q Consensus 743 f~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~----~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGiP~I 818 (900)
... ..+...+ ..+ ...+|. .++||++|||++|+.+.++.+..++++|++++||+||+|||
T Consensus 415 ~~~-~~~~~~l-----~~~----------~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~I 478 (598)
T PRK10785 415 IDA-QTCAAWM-----DEY----------RAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCI 478 (598)
T ss_pred CCH-HHHHHHH-----HHH----------HHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEE
Confidence 000 0111110 000 111222 35799999999999998877788999999999999999999
Q ss_pred eCCChh--------------HH--------HHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEEE---CCEEEEEEeC
Q 002611 819 FYDHIF--------------SH--------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGP 873 (900)
Q Consensus 819 YyGdEf--------------~W--------l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r---~~~vlVviNn 873 (900)
|||||+ +| ++++||+||+|||++|+|+.|+++.+..++++++|.| ++.++|++|+
T Consensus 479 YYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~ 558 (598)
T PRK10785 479 YYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINR 558 (598)
T ss_pred EeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEEC
Confidence 999995 36 8999999999999999999999999999999999998 6789999998
Q ss_pred C
Q 002611 874 G 874 (900)
Q Consensus 874 ~ 874 (900)
+
T Consensus 559 s 559 (598)
T PRK10785 559 G 559 (598)
T ss_pred C
Confidence 8
No 5
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.6e-57 Score=530.40 Aligned_cols=348 Identities=27% Similarity=0.470 Sum_probs=265.0
Q ss_pred eeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---CCCCCCccCC---------CcCCCCCCHHHH
Q 002611 509 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDEL 576 (900)
Q Consensus 509 ~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s---~hGYd~~Dy~---------~IDp~lGt~edf 576 (900)
++++|+|+|++...|.+++||++|||||++||||+|||+||+++.+ +|||++.||+ .|||+|||++||
T Consensus 4 ~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl 83 (479)
T PRK09441 4 GTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEEL 83 (479)
T ss_pred ceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHH
Confidence 5899999999887677888999999999999999999999999874 6999999999 799999999999
Q ss_pred HHHHHHHHHcCCEEEEEeccCccccCCC--CC-------CCCCccCCCC---CCCCCCCcc-----C-----CCCCCCCC
Q 002611 577 KDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQ-------NGVWNIFGGR---LNWDDRAVV-----A-----DDPHFQGR 634 (900)
Q Consensus 577 k~LV~~AH~~GIrVILD~V~NHt~~d~~--~~-------~g~~~~y~g~---~~W~~~~~~-----~-----~~~~f~~~ 634 (900)
|+||++||++||+||+|+|+||++..+. +. ++..+.|... ..|..+..+ . ....|.+.
T Consensus 84 ~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
T PRK09441 84 LNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGT 163 (479)
T ss_pred HHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCc
Confidence 9999999999999999999999996432 11 1111111110 111110000 0 00001000
Q ss_pred ---------------CCCCCC----------CCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhH
Q 002611 635 ---------------GNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 689 (900)
Q Consensus 635 ---------------~~~~~~----------~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~ 689 (900)
....+| +.+..|||||++||+|+++|+++++||++++||||||+|+|++++.+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~ 243 (479)
T PRK09441 164 DYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243 (479)
T ss_pred ccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHH
Confidence 001112 1345699999999999999999999999779999999999999999999
Q ss_pred HHHHHhc----CCc-eEEeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhh
Q 002611 690 KDYLEAT----EPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDE 764 (900)
Q Consensus 690 ~~~~~~~----~p~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~ 764 (900)
+++++++ +|+ +++||+|.+. ...+..|+...+...++|||++...+..++..+....+...
T Consensus 244 ~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~~ 309 (479)
T PRK09441 244 KEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRNI 309 (479)
T ss_pred HHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHhh
Confidence 9988764 245 8999999863 23456777654445679999999888888765433333332
Q ss_pred cCCCCCCcCCCCCcceeecccCCCCCcccCCCCChH-HHHHHHHHHHhCC-CeeeeeCCChhHH--------HHHHHHHH
Q 002611 765 KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-REMQGYAYILTHP-GTPSVFYDHIFSH--------YRQEIEAL 834 (900)
Q Consensus 765 ~~~~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~~-~~klA~allltlP-GiP~IYyGdEf~W--------l~~~~k~L 834 (900)
.. .......|..+++|++|||++|+.+....... ..++|++++||+| |+||||||+|+++ ++++|++|
T Consensus 310 ~~--~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~L 387 (479)
T PRK09441 310 FD--GTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKL 387 (479)
T ss_pred hC--cchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHHH
Confidence 21 11223456788999999999999886543222 3689999999999 9999999999976 89999999
Q ss_pred HHHHHhCcccccCCeeEEeecCCEEEEEE-C----CEEEEEEeCCC
Q 002611 835 LSVRKRNKIHCRSRVEIVKAERDVYAAII-D----EKVAMKLGPGH 875 (900)
Q Consensus 835 i~lRk~~paL~~G~~~~l~~~~~v~a~~r-~----~~vlVviNn~~ 875 (900)
++|||++ +.|+...+..++++++|.| + +.++|++||+.
T Consensus 388 i~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 388 LLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred HHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 9999996 4799998999999999998 2 36888998864
No 6
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=3.8e-57 Score=538.19 Aligned_cols=360 Identities=19% Similarity=0.252 Sum_probs=254.2
Q ss_pred hhhhhcccccccccCccccccccCCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Q 002611 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (900)
Q Consensus 470 a~~yqiF~~~~drF~~~~~~~~p~~~~~~r~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PI 549 (900)
+++||||| |||+.++..+.+ . ++...........| +||||+||++|||||++||||+|||+||
T Consensus 190 aviYqI~~---DRF~nGd~~Nd~-------~-~g~~~d~~~~~~~f------~GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLT---DRFENGDPSNDH-------S-YGRHKDGMQEIGTF------HGGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEeh---hhhcCCCccccc-------c-cCcCCCCccccCcc------cCCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 88999999 999865433211 0 11000000111234 3999999999999999999999999999
Q ss_pred CCCC---------------CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCC------CCCC
Q 002611 550 TESV---------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ------NQNG 608 (900)
Q Consensus 550 fes~---------------s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~------~~~g 608 (900)
+++. ++|||++.||+.|||+|||++|||+||++||++||+||||+|+||++..+. ++..
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 9872 679999999999999999999999999999999999999999999995321 1111
Q ss_pred -----------CCccCCCCCCCCCCCccC-----CCCCCCCCCCCCCCC----------------------CCCCCCCcC
Q 002611 609 -----------VWNIFGGRLNWDDRAVVA-----DDPHFQGRGNKSSGD----------------------NFHAAPNID 650 (900)
Q Consensus 609 -----------~~~~y~g~~~W~~~~~~~-----~~~~f~~~~~~~~~~----------------------~~~~lpdLN 650 (900)
....| .+|.+..... +...|.....+..|| ....|||||
T Consensus 333 ~~~~~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~ 409 (683)
T PRK09505 333 LYLSGDENKKTLGERW---SDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK 409 (683)
T ss_pred hhhhccccccccCccc---ccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCccc
Confidence 11111 2332211000 000121111111111 234688888
Q ss_pred CCC-----------------------hHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHHhc----------C
Q 002611 651 HSQ-----------------------DFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT----------E 697 (900)
Q Consensus 651 ~~n-----------------------p~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~----------~ 697 (900)
+++ |+||++|++++++|++++||||||||+|+|++.+||+++.+++ +
T Consensus 410 te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~ 489 (683)
T PRK09505 410 TESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKAN 489 (683)
T ss_pred ccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 864 5999999999999998899999999999999999998875432 2
Q ss_pred C-------c-eEEeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch-hhhhhhhhcCCC
Q 002611 698 P-------Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC-EYWRLSDEKGKP 768 (900)
Q Consensus 698 p-------~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~-~~~~l~~~~~~~ 768 (900)
| . +++||+|..... ...|+. .++++++||.+...+...+... .+........
T Consensus 490 ~d~~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~-- 550 (683)
T PRK09505 490 PDKALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA-- 550 (683)
T ss_pred cccccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 2 3 699999975311 122332 4678889988775544332211 1111111100
Q ss_pred CCCcCCCCCcceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeeeeCCChh-------------------HH---
Q 002611 769 PGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-------------------SH--- 826 (900)
Q Consensus 769 ~~~~~~~P~~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYyGdEf-------------------~W--- 826 (900)
... -+..+++|++|||++|+.+... +..++++|++++||+||+|+||||||+ +|
T Consensus 551 -~~~--~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~ 626 (683)
T PRK09505 551 -EKL--QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEV 626 (683)
T ss_pred -hhc--CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCcccc
Confidence 000 1124678999999999988776 347889999999999999999999995 25
Q ss_pred ------HHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEEE---CCEEEEEEeC
Q 002611 827 ------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGP 873 (900)
Q Consensus 827 ------l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r---~~~vlVviNn 873 (900)
++++||+|++||++||+|+.|+++.+. ++++|+|.| +++++|++|.
T Consensus 627 ~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 627 SGKSAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred ccchHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 899999999999999999999998874 568999998 5677777764
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=6.9e-55 Score=514.66 Aligned_cols=354 Identities=21% Similarity=0.273 Sum_probs=255.7
Q ss_pred CCCCCCCceeeeecccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHH
Q 002611 501 SPGTGTGFEILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKD 578 (900)
Q Consensus 501 ~~g~~~~y~i~~~~F~Wd~~~-~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~ 578 (900)
|+.+.+.|+|++++|. |+++ .+|||+||+++||||++||||+|||+|||++++ +|||++.||++|||+|||+++||+
T Consensus 2 W~~~~viYqi~~~~f~-d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~ 80 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFF-DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKD 80 (539)
T ss_pred ccccceEEEEehhHhh-cCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHH
Confidence 4444555666666664 3332 259999999999999999999999999999985 799999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeccCccccCCCCCC----CCCccCCCCCCCCCCCccCCCC--CCCC-----------CCCCCCCC
Q 002611 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQN----GVWNIFGGRLNWDDRAVVADDP--HFQG-----------RGNKSSGD 641 (900)
Q Consensus 579 LV~~AH~~GIrVILD~V~NHt~~d~~~~~----g~~~~y~g~~~W~~~~~~~~~~--~f~~-----------~~~~~~~~ 641 (900)
||++||++||+||||+|+||++.+|+++. +..++|.+++.|.+........ .|.+ .+.+....
T Consensus 81 Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 160 (539)
T TIGR02456 81 FVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHR 160 (539)
T ss_pred HHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEec
Confidence 99999999999999999999999987531 1223333323332211000000 0100 01111112
Q ss_pred CCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEeccccccc-------------chhHHHHHHhc---CCc-eEEee
Q 002611 642 NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-------------GGYVKDYLEAT---EPY-FAVGE 704 (900)
Q Consensus 642 ~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~-------------~~f~~~~~~~~---~p~-~liGE 704 (900)
++..+|+||+.||+||++|++++++|+ ++||||||||+++++. .+||+++.+.+ +|+ ++|||
T Consensus 161 f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE 239 (539)
T TIGR02456 161 FFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAE 239 (539)
T ss_pred ccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 357899999999999999999999999 6999999999998762 36888775544 577 79999
Q ss_pred cccCCCcccccCCCCchHHHHHHHHHHhh-cC-CCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC--cce
Q 002611 705 YWDSLSYTYGEMDHNQDAHRQRIIDWINA-AS-GTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS--RAV 780 (900)
Q Consensus 705 vw~~~~~l~g~m~y~~~~~~~~i~~~l~~-~~-~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~--~~v 780 (900)
++.. ...+..|+.. .+ +++++|+|++...+...+...+...+...+.. ...+|. ..+
T Consensus 240 ~~~~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~----~~~~~~~~~~~ 300 (539)
T TIGR02456 240 ANQW---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKE----TPDIPDSCQWC 300 (539)
T ss_pred eCCC---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHH----hhhccCCCcee
Confidence 8543 2345566543 22 67889999886544443333222222221111 011222 356
Q ss_pred eecccCCCC-------------------------------CcccCCCCChHHHHHHHHHHHhCCCeeeeeCCChhH----
Q 002611 781 TFIENHDTG-------------------------------STQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS---- 825 (900)
Q Consensus 781 nflenHDt~-------------------------------R~~s~~~~~~~~~klA~allltlPGiP~IYyGdEf~---- 825 (900)
+|++|||+. |+.+.++.+..++++|++++||+||+|+||||+|++
T Consensus 301 ~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~ 380 (539)
T TIGR02456 301 IFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDN 380 (539)
T ss_pred eecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCC
Confidence 799999994 444445445667899999999999999999999963
Q ss_pred --------------H------------------------------------------HHHHHHHHHHHHHhCcccccCCe
Q 002611 826 --------------H------------------------------------------YRQEIEALLSVRKRNKIHCRSRV 849 (900)
Q Consensus 826 --------------W------------------------------------------l~~~~k~Li~lRk~~paL~~G~~ 849 (900)
| ++++||+||+|||++++|..|++
T Consensus 381 ~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~ 460 (539)
T TIGR02456 381 IWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSL 460 (539)
T ss_pred CccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCce
Confidence 2 47789999999999999999999
Q ss_pred eEEeec-CCEEEEEE---CCEEEEEEeCCC
Q 002611 850 EIVKAE-RDVYAAII---DEKVAMKLGPGH 875 (900)
Q Consensus 850 ~~l~~~-~~v~a~~r---~~~vlVviNn~~ 875 (900)
+.+..+ +++++|.| ++.++|++|.+.
T Consensus 461 ~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~ 490 (539)
T TIGR02456 461 TFLPTGNRRVLAFLREYEGERVLCVFNFSR 490 (539)
T ss_pred EEEecCCCCEEEEEEEcCCcEEEEEEeCCC
Confidence 998875 47999998 677888888774
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2e-53 Score=501.65 Aligned_cols=355 Identities=18% Similarity=0.223 Sum_probs=250.5
Q ss_pred CCCCCCCceeeeecccccCCCCC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCCCCccCCCcCCCCCCHHHHHH
Q 002611 501 SPGTGTGFEILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGYMPRDLYNLSSRYGNIDELKD 578 (900)
Q Consensus 501 ~~g~~~~y~i~~~~F~Wd~~~~G-G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~-hGYd~~Dy~~IDp~lGt~edfk~ 578 (900)
|+...+.|++++++|. ++++.| |||+||+++|+||++||||+|||+|||+++++ +||++.||+.|||+|||+++|++
T Consensus 1 W~~~~v~Y~i~~~~f~-~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFY-DSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHh-cCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHH
Confidence 3445556666666665 444333 99999999999999999999999999999854 69999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeccCccccCCCCCCCC---CccCCCCCCCCCCC---ccCCCCCCCC--------CCCCCCCCCCC
Q 002611 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGV---WNIFGGRLNWDDRA---VVADDPHFQG--------RGNKSSGDNFH 644 (900)
Q Consensus 579 LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~---~~~y~g~~~W~~~~---~~~~~~~f~~--------~~~~~~~~~~~ 644 (900)
||++||++||+||||+|+|||+.+|+++... -++|.+++.|.+.. .......|.+ .+.+....+..
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 159 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDK 159 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCC
Confidence 9999999999999999999999998753211 23343333343211 0000011111 11122222346
Q ss_pred CCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc-----------------------hhHHHHHHhc--CCc
Q 002611 645 AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT--EPY 699 (900)
Q Consensus 645 ~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~-----------------------~f~~~~~~~~--~p~ 699 (900)
.+||||+.||+|+++|.++++||+ ++||||||||+|++++. +||+++.+.+ +|+
T Consensus 160 ~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 238 (543)
T TIGR02403 160 TQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDND 238 (543)
T ss_pred cCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCC
Confidence 799999999999999999999999 68999999999998852 4777765544 566
Q ss_pred -eEEeecccCCCcccccCCCCchHHHHHHHHHHhh-cCCCcccccchhhHHHHHhhhch----------hhhhhhhhcCC
Q 002611 700 -FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTTKGILHSALDRC----------EYWRLSDEKGK 767 (900)
Q Consensus 700 -~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~-~~~~~s~fdf~l~~~l~~~l~~~----------~~~~l~~~~~~ 767 (900)
|+|||+|... ...+..|... ...+++.|+|... ......+. .+......+..
T Consensus 239 ~~lvgE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 302 (543)
T TIGR02403 239 SVTVGEMSSTT--------------IENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTWQT 302 (543)
T ss_pred eEEEEEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHHHH
Confidence 8999999742 1122333321 2245556665421 11111000 01111111100
Q ss_pred CCCCcCCCCCcceeecccCCCCCcccCCCCCh----HHHHHHHHHHHhCCCeeeeeCCChhH------------------
Q 002611 768 PPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------------ 825 (900)
Q Consensus 768 ~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~----~~~klA~allltlPGiP~IYyGdEf~------------------ 825 (900)
.... .....++|++|||++|+.+.++... ...++|++++||+||+||||||||+|
T Consensus 303 --~~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~ 379 (543)
T TIGR02403 303 --GMQA-GGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESL 379 (543)
T ss_pred --hccc-cCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHH
Confidence 0000 0123457999999999999987432 35788889999999999999999831
Q ss_pred ---------------------------------H-----------------------------------HHHHHHHHHHH
Q 002611 826 ---------------------------------H-----------------------------------YRQEIEALLSV 837 (900)
Q Consensus 826 ---------------------------------W-----------------------------------l~~~~k~Li~l 837 (900)
| ++++||+||+|
T Consensus 380 ~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~l 459 (543)
T TIGR02403 380 NAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIAL 459 (543)
T ss_pred HHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHH
Confidence 2 67899999999
Q ss_pred HHhCcccccCCeeEEeecC-CEEEEEE---CCEEEEEEeCCCC
Q 002611 838 RKRNKIHCRSRVEIVKAER-DVYAAII---DEKVAMKLGPGHY 876 (900)
Q Consensus 838 Rk~~paL~~G~~~~l~~~~-~v~a~~r---~~~vlVviNn~~~ 876 (900)
||++|+|..|+++.+..++ ++++|.| +++++|++|.+..
T Consensus 460 Rk~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 460 RKSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred HhhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 9999999999999987765 7999998 5678888888754
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=4.3e-52 Score=489.96 Aligned_cols=354 Identities=16% Similarity=0.194 Sum_probs=244.2
Q ss_pred CCCCCCCceeeeecccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHH
Q 002611 501 SPGTGTGFEILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKD 578 (900)
Q Consensus 501 ~~g~~~~y~i~~~~F~Wd~~~-~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~ 578 (900)
|+.+.+.|+|++++|. |+++ .+|||+||+++||||++||||+|||+||++++. +|||++.||+.|||+|||+++|++
T Consensus 7 W~~~~v~Yqi~~~~f~-d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~ 85 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQ-DTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDE 85 (551)
T ss_pred hhhcCeEEEEEchHhh-cCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHH
Confidence 4444555555555554 3332 259999999999999999999999999999885 699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeccCccccCCCCCCC---CCccCCCCCCCCCCCc---cCC-CCCCCCCC--------CCCCCCCC
Q 002611 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNG---VWNIFGGRLNWDDRAV---VAD-DPHFQGRG--------NKSSGDNF 643 (900)
Q Consensus 579 LV~~AH~~GIrVILD~V~NHt~~d~~~~~g---~~~~y~g~~~W~~~~~---~~~-~~~f~~~~--------~~~~~~~~ 643 (900)
||++||++||+||||+|+||++.+|++... .-++|.+.+.|.+... +.. ...|.+.. .+....+.
T Consensus 86 lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~ 165 (551)
T PRK10933 86 LVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFA 165 (551)
T ss_pred HHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeeccc
Confidence 999999999999999999999999876322 2234433344432110 001 11121111 11111233
Q ss_pred CCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc-----------------------hhHHHHHHhc-CC-
Q 002611 644 HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT-EP- 698 (900)
Q Consensus 644 ~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~-----------------------~f~~~~~~~~-~p- 698 (900)
..+||||++||+||++|++++++|+ ++||||||||+|+++.. +|++++.+.+ ++
T Consensus 166 ~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (551)
T PRK10933 166 PEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPR 244 (551)
T ss_pred ccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhccc
Confidence 5799999999999999999999999 79999999999998764 3566655432 23
Q ss_pred c-eEEeecccCCCcccccCCCCchHHHHHHHHHHhh-cCCCcccccchhhHHHHHhhhch----------hhhhhhhhcC
Q 002611 699 Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTTKGILHSALDRC----------EYWRLSDEKG 766 (900)
Q Consensus 699 ~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~-~~~~~s~fdf~l~~~l~~~l~~~----------~~~~l~~~~~ 766 (900)
+ ++|||+|... .+.+..|... ...+.+.|+|... ....+.+. .+.++...+.
T Consensus 245 ~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~fnf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (551)
T PRK10933 245 GLMTVGEMSSTS--------------LEHCQRYAALTGSELSMTFNFHHL--KVDYPNGEKWTLAKPDFVALKTLFRHWQ 308 (551)
T ss_pred CcEEEEeecCCC--------------HHHHHHhhcccCCeeeeEecHHHh--hhhhccCCcccccccCHHHHHHHHHHHH
Confidence 3 7999999642 1122233211 1223444444321 11111000 0001111100
Q ss_pred CCCCCcCCCCCcceeecccCCCCCcccCCCCCh----HHHHHHHHHHHhCCCeeeeeCCChhH-----------------
Q 002611 767 KPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS----------------- 825 (900)
Q Consensus 767 ~~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~----~~~klA~allltlPGiP~IYyGdEf~----------------- 825 (900)
. . +. ......+|++|||++|+.+.++... ..++++++++||+||+||||||+|+|
T Consensus 309 ~--~-~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~ 384 (551)
T PRK10933 309 Q--G-MH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVES 384 (551)
T ss_pred H--h-hc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHH
Confidence 0 0 00 0013357899999999999987442 23678888999999999999999841
Q ss_pred ----------------------------------H-----------------------------------HHHHHHHHHH
Q 002611 826 ----------------------------------H-----------------------------------YRQEIEALLS 836 (900)
Q Consensus 826 ----------------------------------W-----------------------------------l~~~~k~Li~ 836 (900)
| ++++||+||+
T Consensus 385 ~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~ 464 (551)
T PRK10933 385 LNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIA 464 (551)
T ss_pred HHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHH
Confidence 2 5689999999
Q ss_pred HHHhCcccccCCeeEEee-cCCEEEEEE---CCEEEEEEeCCCC
Q 002611 837 VRKRNKIHCRSRVEIVKA-ERDVYAAII---DEKVAMKLGPGHY 876 (900)
Q Consensus 837 lRk~~paL~~G~~~~l~~-~~~v~a~~r---~~~vlVviNn~~~ 876 (900)
|||++|+|..|++..+.. ++++++|.| ++.++|++|.+..
T Consensus 465 lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~ 508 (551)
T PRK10933 465 LRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSRE 508 (551)
T ss_pred HhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 999999999999998765 457999998 6788888888753
No 10
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=2.1e-48 Score=464.81 Aligned_cols=365 Identities=18% Similarity=0.243 Sum_probs=241.8
Q ss_pred CCCCceeeeecccccCCC---CCCCHHHH-----------HHHHHHHHHcCCCEEEeCCCCCCCC----------CCCCC
Q 002611 504 TGTGFEILCQGFNWESHK---SGRWYMEL-----------KEKATELSSLGFSVIWLPPPTESVS----------PEGYM 559 (900)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~---~GG~l~GI-----------~~kLdYLk~LGVt~I~L~PIfes~s----------~hGYd 559 (900)
+...|++++++|.-+... .-|+|.|+ +++|||||+||||+||||||+++.+ +|||+
T Consensus 127 ~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~ 206 (605)
T TIGR02104 127 DAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD 206 (605)
T ss_pred HcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC
Confidence 346788888887632110 12555554 4569999999999999999999864 69999
Q ss_pred CccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC-CCCCCCCccCCCCC
Q 002611 560 PRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPH 630 (900)
Q Consensus 560 ~~Dy~~IDp~lGt--------~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~-~~W~~~~~~~~~~~ 630 (900)
+.||++++++||+ .+|||+||++||++||+||||+|+||++.... .+|.+. ..|+. .
T Consensus 207 ~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~------~~f~~~~~~~~~--------~ 272 (605)
T TIGR02104 207 PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE------SPFEKTVPGYYY--------R 272 (605)
T ss_pred CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC------CcccCCCCCeeE--------E
Confidence 9999999999987 48999999999999999999999999985321 122221 11110 0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHHh---cCCc-eEEeecc
Q 002611 631 FQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYW 706 (900)
Q Consensus 631 f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~---~~p~-~liGEvw 706 (900)
....+.+..++++ ..++|+++|+||++|++++++|++++||||||||+|.+++.+||+++.++ .+|+ +++||.|
T Consensus 273 ~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w 350 (605)
T TIGR02104 273 YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGW 350 (605)
T ss_pred ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccC
Confidence 0111222112222 24799999999999999999999999999999999999999999887654 4677 7999999
Q ss_pred cCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhh---------ch--hhhhhhhhcCCCC-----C
Q 002611 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALD---------RC--EYWRLSDEKGKPP-----G 770 (900)
Q Consensus 707 ~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~---------~~--~~~~l~~~~~~~~-----~ 770 (900)
+..+.+.. +. ......+ ... ...+.|++.++..++.... +. ....+...+.... .
T Consensus 351 ~~~~~~~~---~~----~~~~~~~-~~~-~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~ 421 (605)
T TIGR02104 351 DLGTPLPP---EQ----KATKANA-YQM-PGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVK 421 (605)
T ss_pred CCCCCcch---hh----hhhhhcc-CCC-CceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccc
Confidence 86431100 00 0000000 000 0123344444444431110 00 0111111111000 0
Q ss_pred CcCCCCCcceeecccCCCCCcccCCCC---------ChHHHHHHHHHHHhCCCeeeeeCCChhH----------------
Q 002611 771 VVGWWPSRAVTFIENHDTGSTQGHWRF---------PGGREMQGYAYILTHPGTPSVFYDHIFS---------------- 825 (900)
Q Consensus 771 ~~~~~P~~~vnflenHDt~R~~s~~~~---------~~~~~klA~allltlPGiP~IYyGdEf~---------------- 825 (900)
.....|..+|||++|||+.|+.+.+.. ..++.++|++++||+||+||||||||++
T Consensus 422 ~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~ 501 (605)
T TIGR02104 422 PSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSI 501 (605)
T ss_pred cccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcc
Confidence 112356689999999999987554321 1457899999999999999999999962
Q ss_pred ----H--------HHHHHHHHHHHHHhCcccccCCeeE-------Eee-cCCEEEEEEC--------CEEEEEEeCCCCC
Q 002611 826 ----H--------YRQEIEALLSVRKRNKIHCRSRVEI-------VKA-ERDVYAAIID--------EKVAMKLGPGHYE 877 (900)
Q Consensus 826 ----W--------l~~~~k~Li~lRk~~paL~~G~~~~-------l~~-~~~v~a~~r~--------~~vlVviNn~~~~ 877 (900)
| ++++||+||+|||++|+|+.|+... +.. ++.+++|.|. +.++|++|.+...
T Consensus 502 ~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~ 581 (605)
T TIGR02104 502 NQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEP 581 (605)
T ss_pred cccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCC
Confidence 5 8999999999999999999887532 222 4578999872 2588888887432
Q ss_pred CC---CCCCCeEEEEcCCC
Q 002611 878 PP---SGSQNWSFVTEGRD 893 (900)
Q Consensus 878 ~~---~g~~~~~~~~~g~~ 893 (900)
.. ...+.|+..++...
T Consensus 582 ~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 582 VDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred eEEECCCCCCEEEEECCCc
Confidence 21 11245777666543
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=4.9e-48 Score=454.82 Aligned_cols=341 Identities=21% Similarity=0.231 Sum_probs=241.2
Q ss_pred CCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHH
Q 002611 503 GTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (900)
.+.+.|+++++.|. ..|+|+||+++|||||+||||+||||||++++ .+|||++.||++||++|||+++||+||
T Consensus 92 ~~~viYE~hv~~f~-----~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV 166 (542)
T TIGR02402 92 EEAVIYELHVGTFT-----PEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALV 166 (542)
T ss_pred cccEEEEEEhhhcC-----CCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHH
Confidence 45678999999997 36999999999999999999999999998887 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCCh---HHH
Q 002611 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---FVR 657 (900)
Q Consensus 581 ~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np---~Vr 657 (900)
++||++||+||||+|+||++.++... ..|. . +|.. .+.++|+ +++|+++| +||
T Consensus 167 ~~aH~~Gi~VilD~V~NH~~~~~~~~----~~~~---~-----------y~~~--~~~~~wg----~~~n~~~~~~~~vr 222 (542)
T TIGR02402 167 DAAHGLGLGVILDVVYNHFGPEGNYL----PRYA---P-----------YFTD--RYSTPWG----AAINFDGPGSDEVR 222 (542)
T ss_pred HHHHHCCCEEEEEEccCCCCCccccc----cccC---c-----------cccC--CCCCCCC----CccccCCCcHHHHH
Confidence 99999999999999999998654211 0110 0 1111 1112222 47999999 999
Q ss_pred HHHHHHHHHHHHHhCCCeEEecccccccc----hhHHHHHH---hcCCc----eEEeecccCC-Cccc----ccCCCC--
Q 002611 658 KDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLE---ATEPY----FAVGEYWDSL-SYTY----GEMDHN-- 719 (900)
Q Consensus 658 ~~i~~vl~~W~~e~GIDGfRlD~a~~l~~----~f~~~~~~---~~~p~----~liGEvw~~~-~~l~----g~m~y~-- 719 (900)
++|++++++|+++|||||||||++++++. +||+++.+ +++|+ ++|||.|.+. .+.. +.+.+.
T Consensus 223 ~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~ 302 (542)
T TIGR02402 223 RYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQ 302 (542)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEE
Confidence 99999999999999999999999998864 37776544 44555 6999998542 2211 111110
Q ss_pred -chHHHHHHHHHHhhcC-CCcccccchhhHHHHHhhhch-----hhhhhhh-hcCCCCCCcCCCCCcceeecccCCC---
Q 002611 720 -QDAHRQRIIDWINAAS-GTAGAFDVTTKGILHSALDRC-----EYWRLSD-EKGKPPGVVGWWPSRAVTFIENHDT--- 788 (900)
Q Consensus 720 -~~~~~~~i~~~l~~~~-~~~s~fdf~l~~~l~~~l~~~-----~~~~l~~-~~~~~~~~~~~~P~~~vnflenHDt--- 788 (900)
.+.++..+..++.+.. +..+.+.-.. ..+.+.+..+ ....... ..+.. ....-|.+.++|++|||+
T Consensus 303 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~-~~l~~~l~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~vnfl~nHD~~gn 379 (542)
T TIGR02402 303 WNDDFHHALHVLLTGERQGYYADFGDPL-AALAKTLRDGFVYDGEYSPFRGRPHGRP--SGDLPPHRFVVFIQNHDQIGN 379 (542)
T ss_pred ECchHHHHHHHHhcCCcceeecccCcCH-HHHHHHHHHhcccCccccccccccCCCC--CCCCCHHHEEEEccCcccccc
Confidence 1235667777764321 1211111011 1222222111 0000000 00000 000124578999999997
Q ss_pred ----CCcccCCCCChHHHHHHHHHHHhCCCeeeeeCCChh----------------------------------------
Q 002611 789 ----GSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF---------------------------------------- 824 (900)
Q Consensus 789 ----~R~~s~~~~~~~~~klA~allltlPGiP~IYyGdEf---------------------------------------- 824 (900)
.|+.+.+. .++.++|++++||+||+||||||||+
T Consensus 380 ~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~p 457 (542)
T TIGR02402 380 RALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVP 457 (542)
T ss_pred cchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCC
Confidence 67777654 58899999999999999999999983
Q ss_pred -------------HH----------HHHHHHHHHHHHHhCcccccCCeeEEee----cCCEEEEEE-CCEEEEEEeCCCC
Q 002611 825 -------------SH----------YRQEIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII-DEKVAMKLGPGHY 876 (900)
Q Consensus 825 -------------~W----------l~~~~k~Li~lRk~~paL~~G~~~~l~~----~~~v~a~~r-~~~vlVviNn~~~ 876 (900)
+| ++++||+||+|||++++|+.++...+.. ++.++++.. +++++|++|.+..
T Consensus 458 dp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 458 DPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTS 537 (542)
T ss_pred CCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCC
Confidence 26 7899999999999999998887555443 446777765 5678899998754
Q ss_pred C
Q 002611 877 E 877 (900)
Q Consensus 877 ~ 877 (900)
.
T Consensus 538 ~ 538 (542)
T TIGR02402 538 P 538 (542)
T ss_pred C
Confidence 3
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=5.2e-47 Score=454.82 Aligned_cols=319 Identities=21% Similarity=0.293 Sum_probs=225.5
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH--HHHHHHcCCCEEEeCCCCCCC-----------CCCCCCCccCCC
Q 002611 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYN 565 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~----~~GG~l~GI~~k--LdYLk~LGVt~I~L~PIfes~-----------s~hGYd~~Dy~~ 565 (900)
.+.+.|++++++|.-... ...|+|+||+++ |||||+||||+|||+|||++. ++|||+|.||++
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 456789999999973221 235999999985 999999999999999999975 369999999999
Q ss_pred cCCCC---CCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCC
Q 002611 566 LSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSG 640 (900)
Q Consensus 566 IDp~l---Gt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~ 640 (900)
|||+| |+.+|||+||++||++||+||||+|+|||+..+.. +....|.+. ..|+... . ...+.+..+
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~~~yy~~~--~-----~~~~~~~~~ 304 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNEL--GPTLSFRGIDNASYYRLQ--P-----DDKRYYIND 304 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCC--CCcccccCCCCCcceEec--C-----CCCceecCC
Confidence 99999 67899999999999999999999999999976532 111112221 1111100 0 001122122
Q ss_pred CCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc---------hhHHHHHHh-cCCc-eEEeecccCC
Q 002611 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG---------GYVKDYLEA-TEPY-FAVGEYWDSL 709 (900)
Q Consensus 641 ~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~---------~f~~~~~~~-~~p~-~liGEvw~~~ 709 (900)
. ...+++|+++|+||++|+++++||++++||||||||+|..+.. .|++++.+. +.|+ ++|||.|+..
T Consensus 305 ~--g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 305 T--GTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIG 382 (688)
T ss_pred C--CccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCC
Confidence 2 2346899999999999999999999999999999999998753 466665543 4555 7999999864
Q ss_pred --CcccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 002611 710 --SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (900)
Q Consensus 710 --~~l~g~m----~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 783 (900)
.+..+.+ ....+.+|+.|++|+.+..+... .+...+.+. ..+.. ....-|.++||||
T Consensus 383 ~~~~~~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~--------~~~~~l~gs--~~~~~-------~~~~~~~~~iNyv 445 (688)
T TIGR02100 383 PGGYQVGNFPPGWAEWNDRYRDDMRRFWRGDAGMIG--------ELANRLTGS--SDLFE-------HNGRRPWASINFV 445 (688)
T ss_pred CCcccccCCCCceEEecHHHHHHHHHHHcCCCCcHH--------HHHHHHhCC--Hhhcc-------ccCCCcCEEEEEE
Confidence 2322211 11224568888888865432211 111111111 00000 0112366899999
Q ss_pred ccCCCCCcccCCCC--------------------------------------ChHHHHHHHHHHHhCCCeeeeeCCChhH
Q 002611 784 ENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHIFS 825 (900)
Q Consensus 784 enHDt~R~~s~~~~--------------------------------------~~~~~klA~allltlPGiP~IYyGdEf~ 825 (900)
++||+.++...+.. ..++.|++++++||+||+|||||||||+
T Consensus 446 ~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g 525 (688)
T TIGR02100 446 TAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFG 525 (688)
T ss_pred eCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhc
Confidence 99999875442110 0346799999999999999999999962
Q ss_pred --------------------H--------HHHHHHHHHHHHHhCcccccCCe
Q 002611 826 --------------------H--------YRQEIEALLSVRKRNKIHCRSRV 849 (900)
Q Consensus 826 --------------------W--------l~~~~k~Li~lRk~~paL~~G~~ 849 (900)
| +++++|+||+|||+||+|+.+.+
T Consensus 526 ~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~ 577 (688)
T TIGR02100 526 RTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERF 577 (688)
T ss_pred cCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhccccc
Confidence 5 99999999999999999987644
No 13
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.4e-48 Score=426.18 Aligned_cols=284 Identities=26% Similarity=0.421 Sum_probs=199.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
|||+||++||||||+||||+|||+||++++ ++|||+|.||++|||+|||++|||+||++||++||+||||+|+||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 899999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC----ccCCCCCCCCCC--CccCCCC-CCCCCCCCCC-----CCCCCCCCCcCCCChHHHHHHHHHHHHHHHH
Q 002611 603 YQNQNGVW----NIFGGRLNWDDR--AVVADDP-HFQGRGNKSS-----GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (900)
Q Consensus 603 ~~~~~g~~----~~y~g~~~W~~~--~~~~~~~-~f~~~~~~~~-----~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e 670 (900)
|.+..... .++...+.|.+. ..+.+.. .+........ ...+.++|+||++||+||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 87421100 012111334321 1111110 1111111110 24678999999999999999999999999 7
Q ss_pred hCCCeEEecccccccchhHHHHHHhcC---Cc-eEEeecccCCCcccccCCCCchHHHHHHHHHHhh-cCCCcccccchh
Q 002611 671 IGYDGWRLDFVRGFWGGYVKDYLEATE---PY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 745 (900)
Q Consensus 671 ~GIDGfRlD~a~~l~~~f~~~~~~~~~---p~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~-~~~~~s~fdf~l 745 (900)
+||||||||+|++++.++|+++.++++ |+ +++||+|.... ..+..+... .......+++..
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcccc
Confidence 889999999999999999999877653 55 89999998631 111111111 111112344443
Q ss_pred hHHHHHhh---hch--hhhhhhhhcCCCCCCcCCC--CCcceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeee
Q 002611 746 KGILHSAL---DRC--EYWRLSDEKGKPPGVVGWW--PSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSV 818 (900)
Q Consensus 746 ~~~l~~~l---~~~--~~~~l~~~~~~~~~~~~~~--P~~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGiP~I 818 (900)
........ ... ....+...... ....+ +...++|++|||+.|+.+.++....+.++|++++||+||+|||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~i 302 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSS---WQSSYPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMI 302 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHH---HHHHSTTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEE
T ss_pred cccccchhhhhccccchhhhhhhhhhh---hhhhhcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEE
Confidence 33322221 000 01111111000 00111 3478999999999999888774444899999999999999999
Q ss_pred eCCChhH
Q 002611 819 FYDHIFS 825 (900)
Q Consensus 819 YyGdEf~ 825 (900)
|||||++
T Consensus 303 y~G~E~g 309 (316)
T PF00128_consen 303 YYGDEIG 309 (316)
T ss_dssp ETTGGGT
T ss_pred EeChhcc
Confidence 9999985
No 14
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.1e-46 Score=474.13 Aligned_cols=457 Identities=18% Similarity=0.161 Sum_probs=289.2
Q ss_pred chhhcccCcccCCCCcceeEEEe-cCccceeEEEEEeCCccccccCCc-ceEEeCCCCCCCCCcccccccccCCCccccc
Q 002611 345 NKALRTLLQPKEGGKGCSRLFTV-DEEFAGFLFVLKLNENTWLKCMEN-DFYIPLTSSSCLPAESVQEMLIPGKAEEATQ 422 (900)
Q Consensus 345 ~~a~~Tpf~~~~~~~~~~~~~~l-~~~~~g~~fVl~~~~~~W~k~~g~-df~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (900)
.+-+..|||+...+. -+.|.| ...-+.+.+||..+ . ++. ...++|+..... .|.+ ...+..
T Consensus 9 ~~g~~~plGA~~~~~--gv~F~v~ap~A~~V~L~lf~~-~-----~~~~~~~~~l~~~~g~-------vW~~--~i~~~~ 71 (1221)
T PRK14510 9 SPGFREPLGAVPDGG--GVNLALFSGAAERVEFCLFDL-W-----GVREEARIKLPGRTGD-------VWHG--FIVGVG 71 (1221)
T ss_pred CCCCCCCCceEEECC--eEEEEEECCCCCEEEEEEEEC-C-----CCCeeEEEECCCCcCC-------EEEE--EEccCC
Confidence 345677899988766 467888 66667788888765 1 111 135676543221 2322 111111
Q ss_pred ccccchhhhhHHHHHhhcccCcccchhccccchhhhhhhhHHHHhhhhh-hhhcccccccccCcccc------cccc---
Q 002611 423 EVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAE-AYSIFRTTAPTFFEEAA------VELE--- 492 (900)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~q~tv~~~~~~~~a~-~yqiF~~~~drF~~~~~------~~~p--- 492 (900)
+ + ..|-+.+... . ++ ..+...+...++++.|......|.. .-.||+ +||..... ...|
T Consensus 72 ~-g-~~Ygyrv~g~----~-~p--~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~---~~~~~~~~~~~d~~~~~pk~v 139 (1221)
T PRK14510 72 P-G-ARYGNRQEGP----G-GP--GEGHRFNPPKLLVDPYARPLDRPFWLHQAIFD---DRFFNGDEDLTDSAVLVPKVV 139 (1221)
T ss_pred C-C-cEEEEEeccC----C-Cc--ccccccCCCeEeeCCCCceEeCCcccCccccc---ccccCCCcccccCcccCccce
Confidence 1 1 1343333210 0 00 0122223445667777665544310 112777 77753211 1111
Q ss_pred -------CCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHH------HHHHcCCCEEEeCCCCCCC------
Q 002611 493 -------ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESV------ 553 (900)
Q Consensus 493 -------~~~~~~r~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLd------YLk~LGVt~I~L~PIfes~------ 553 (900)
..+.+....+.+...|++++++|....+..||+++|+.++|+ |||+||||+|||||||++.
T Consensus 140 v~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~ 219 (1221)
T PRK14510 140 VPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLP 219 (1221)
T ss_pred eecccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccc
Confidence 011111122345578999999998544455666666666666 9999999999999999986
Q ss_pred -----CCCCCCCccCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC--CCCCCCCc
Q 002611 554 -----SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAV 624 (900)
Q Consensus 554 -----s~hGYd~~Dy~~IDp~lG--t~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~--~~W~~~~~ 624 (900)
++|||++.||++|||+|| +.+|||+||++||++||+||||+|||||+.++.. +....+.+. ..|+..
T Consensus 220 ~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~--~p~~~~~~~d~~~yy~~-- 295 (1221)
T PRK14510 220 QLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHY--GPTLSAYGSDNSPYYRL-- 295 (1221)
T ss_pred cccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCC--CCcccccCCCCCCceEe--
Confidence 357899999999999999 9999999999999999999999999999976532 110001110 111100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc---cchhHHHH---HHhcCC
Q 002611 625 VADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---WGGYVKDY---LEATEP 698 (900)
Q Consensus 625 ~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l---~~~f~~~~---~~~~~p 698 (900)
.. .....|..+++..++++ .++|+|+++|+++++||++ +||||||||+|.++ +.+||+.+ +++++|
T Consensus 296 ~~-----~~~~~y~~~~G~gn~~n--~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~ 367 (1221)
T PRK14510 296 EP-----GNPKEYENWWGCGNLPN--LERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQ 367 (1221)
T ss_pred cC-----CCCCcccCCCCCCCccc--cCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCC
Confidence 00 01223444555555554 4599999999999999996 99999999999999 88888764 566677
Q ss_pred c-eE-----EeecccCCC--ccc-------ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhh
Q 002611 699 Y-FA-----VGEYWDSLS--YTY-------GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSD 763 (900)
Q Consensus 699 ~-~l-----iGEvw~~~~--~l~-------g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~ 763 (900)
+ ++ |||.|+..+ +.. +.|||. +++.+++|+.+..+.. ..+...+.+. .+
T Consensus 368 d~~l~~~~ligE~Wd~~~~~~~~g~f~~~~~~~N~~---frd~vr~f~~g~~~~~--------~~~a~~l~gs-----~d 431 (1221)
T PRK14510 368 DPVLRRLKMIAEVWDDGLGGYQYGKFPQYWGEWNDP---LRDIMRRFWLGDIGMA--------GELATRLAGS-----AD 431 (1221)
T ss_pred CcCcccCcEEEecccCCCCccccCCCCcceeeeccH---HHHHHHHHhcCCCchH--------HHHHHHHhCc-----Hh
Confidence 6 44 999998642 222 234443 4677777775432110 0111111110 00
Q ss_pred hcCCCCCCcCCCCCcceeecccCCCCCcccCCCC--------------------------------------ChHHHHHH
Q 002611 764 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF--------------------------------------PGGREMQG 805 (900)
Q Consensus 764 ~~~~~~~~~~~~P~~~vnflenHDt~R~~s~~~~--------------------------------------~~~~~klA 805 (900)
... .....|..+|||++|||+.|+.+.+.+ ..++.++|
T Consensus 432 ~~~----~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a 507 (1221)
T PRK14510 432 IFP----HRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLL 507 (1221)
T ss_pred hcC----ccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHH
Confidence 000 011245678999999999997664431 12467899
Q ss_pred HHHHHhCCCeeeeeCCChhH--------------------H------HHHHHHHHHHHHHhCcccccCCeeEEee-----
Q 002611 806 YAYILTHPGTPSVFYDHIFS--------------------H------YRQEIEALLSVRKRNKIHCRSRVEIVKA----- 854 (900)
Q Consensus 806 ~allltlPGiP~IYyGdEf~--------------------W------l~~~~k~Li~lRk~~paL~~G~~~~l~~----- 854 (900)
++++||++|+||||||||++ | ++++||+||+|||+||+|+.|.+.....
T Consensus 508 ~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~ 587 (1221)
T PRK14510 508 LLTLMSFPGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASG 587 (1221)
T ss_pred HHHHHhCCCCcEEecchhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCcccccCC
Confidence 99999999999999999974 5 9999999999999999999998876542
Q ss_pred cCCEEEEE
Q 002611 855 ERDVYAAI 862 (900)
Q Consensus 855 ~~~v~a~~ 862 (900)
.++|..|.
T Consensus 588 ~~dv~w~~ 595 (1221)
T PRK14510 588 GKDVEWLR 595 (1221)
T ss_pred CCCEEEEC
Confidence 23565554
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.1e-46 Score=448.50 Aligned_cols=330 Identities=17% Similarity=0.228 Sum_probs=229.0
Q ss_pred CCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHH
Q 002611 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (900)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GG~l~GI~~kL-dYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (900)
...|+++++.|.-...+.-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||+++||+||+
T Consensus 148 ~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~ 227 (633)
T PRK12313 148 ISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVD 227 (633)
T ss_pred ceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHH
Confidence 46799999998732221128999999995 99999999999999999987 6899999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCC--CCCCCCCCCCCCCCCcCCCChHHHHH
Q 002611 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNKSSGDNFHAAPNIDHSQDFVRKD 659 (900)
Q Consensus 582 ~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~--~~~~~~~~~~~~lpdLN~~np~Vr~~ 659 (900)
+||++||+||||+|+||++.++.. ...|.+...|. +.. .+... .++.+++|+.||+||++
T Consensus 228 ~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~----~w~~~~~n~~~~~vr~~ 289 (633)
T PRK12313 228 ALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYE----------YQDPRRAENP----DWGALNFDLGKNEVRSF 289 (633)
T ss_pred HHHHCCCEEEEEECCCCCCCCccc----ccccCCCccee----------ecCCCCCcCC----CCCCcccCCCCHHHHHH
Confidence 999999999999999999976531 11122210010 000 01111 12347899999999999
Q ss_pred HHHHHHHHHHHhCCCeEEecccccc-----------------------cchhHHHHHH---hcCCc-eEEeecccCCCcc
Q 002611 660 IKEWLCWLRNEIGYDGWRLDFVRGF-----------------------WGGYVKDYLE---ATEPY-FAVGEYWDSLSYT 712 (900)
Q Consensus 660 i~~vl~~W~~e~GIDGfRlD~a~~l-----------------------~~~f~~~~~~---~~~p~-~liGEvw~~~~~l 712 (900)
|++++++|+++|||||||||++..+ ..+||+++.+ +.+|+ ++|||.+...+.+
T Consensus 290 l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~ 369 (633)
T PRK12313 290 LISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKV 369 (633)
T ss_pred HHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccc
Confidence 9999999999999999999988533 1357877654 45677 7999987542111
Q ss_pred -----cccCCCCch---HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecc
Q 002611 713 -----YGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (900)
Q Consensus 713 -----~g~m~y~~~---~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfle 784 (900)
++.++|... .+...+..|+...... ..++.. .+. .. +...+.. ..++++
T Consensus 370 ~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~-~~~~~~---~~~--------~~----------~~~~~~e-~~~l~~ 426 (633)
T PRK12313 370 TGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIY-RKYHHN---LLT--------FS----------FMYAFSE-NFVLPF 426 (633)
T ss_pred cccccCCCCCcCceeCcHHHHHHHHHhhhCccc-cccccc---cch--------HH----------Hhhhhhc-ccccCC
Confidence 121222110 1122233333211100 000000 000 00 0001111 125678
Q ss_pred cCCC-----CCcccCCCCCh----HHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHHH
Q 002611 785 NHDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEA 833 (900)
Q Consensus 785 nHDt-----~R~~s~~~~~~----~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k~ 833 (900)
|||+ +|+...+.++. ++++++++++||+||+||||||+|++ | +.++||+
T Consensus 427 sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~ 506 (633)
T PRK12313 427 SHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSD 506 (633)
T ss_pred CCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHH
Confidence 9999 56666654443 67899999999999999999999974 5 8899999
Q ss_pred HHHHHHhCccccc-----CCeeEEeec---CCEEEEEEC-----CEEEEEEeCCC
Q 002611 834 LLSVRKRNKIHCR-----SRVEIVKAE---RDVYAAIID-----EKVAMKLGPGH 875 (900)
Q Consensus 834 Li~lRk~~paL~~-----G~~~~l~~~---~~v~a~~r~-----~~vlVviNn~~ 875 (900)
||+||+++|+|+. |.+.++..+ +.+++|.|. +.++||+|.+.
T Consensus 507 Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~ 561 (633)
T PRK12313 507 LNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP 561 (633)
T ss_pred HHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC
Confidence 9999999999974 456777654 369999982 45888888875
No 16
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.3e-46 Score=449.24 Aligned_cols=336 Identities=16% Similarity=0.143 Sum_probs=227.6
Q ss_pred CCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHH
Q 002611 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (900)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GG~l~GI~~kL-dYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (900)
...|+++++.|. .+|++++|+++| ||||+||||+||||||++++ .+|||++.||++|+++|||++|||+||+
T Consensus 139 ~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~ 213 (613)
T TIGR01515 139 VSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVD 213 (613)
T ss_pred ceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHH
Confidence 467999999986 359999999997 99999999999999999987 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHH
Q 002611 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (900)
Q Consensus 582 ~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~ 661 (900)
+||++||+||||+|+||++.++... ..|.+...|. +... . ......++.+++|+++|+||++|+
T Consensus 214 ~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~y~----------~~~~-~-~~~~~~w~~~~~~~~~~~Vr~~l~ 277 (613)
T TIGR01515 214 ACHQAGIGVILDWVPGHFPKDDHGL----AEFDGTPLYE----------HKDP-R-DGEHWDWGTLIFDYGRPEVRNFLV 277 (613)
T ss_pred HHHHCCCEEEEEecccCcCCccchh----hccCCCccee----------ccCC-c-cCcCCCCCCceecCCCHHHHHHHH
Confidence 9999999999999999999765311 1122110010 0000 0 000111246799999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccc------------------------chhHHHHHH---hcCCc-eEEeecccCCCccc
Q 002611 662 EWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSYTY 713 (900)
Q Consensus 662 ~vl~~W~~e~GIDGfRlD~a~~l~------------------------~~f~~~~~~---~~~p~-~liGEvw~~~~~l~ 713 (900)
+++++|+++|||||||||++.++- .+||+++.+ +.+|+ ++|||.+.+.+-..
T Consensus 278 ~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~ 357 (613)
T TIGR01515 278 ANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVT 357 (613)
T ss_pred HHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCcccc
Confidence 999999999999999999975431 358887654 44687 79999875421100
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCC-----
Q 002611 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT----- 788 (900)
Q Consensus 714 g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt----- 788 (900)
.....+..+++..+++.+...+...+....+.+..............+. ....+++|||+
T Consensus 358 --------------~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~~~~g~ 422 (613)
T TIGR01515 358 --------------RPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDEVVHGK 422 (613)
T ss_pred --------------ccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCCcccCc
Confidence 0000011122222222222222222211111000000000000000011 11236889999
Q ss_pred CCcccCCCCC----hHHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHHHHHHHHHhCc
Q 002611 789 GSTQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVRKRNK 842 (900)
Q Consensus 789 ~R~~s~~~~~----~~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k~Li~lRk~~p 842 (900)
+|+...+.++ .+++|++++++||+||+||||||+|++ | +.++||+|++||+++|
T Consensus 423 ~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~p 502 (613)
T TIGR01515 423 KSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSK 502 (613)
T ss_pred ccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHHhhCH
Confidence 4555555433 257899999999999999999999963 5 8889999999999999
Q ss_pred ccccCC-----eeEEee---cCCEEEEEEC-----CEEEEEEeCCCC
Q 002611 843 IHCRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 876 (900)
Q Consensus 843 aL~~G~-----~~~l~~---~~~v~a~~r~-----~~vlVviNn~~~ 876 (900)
+|..|+ ++++.. ++.+++|.|. +.++|++|.+..
T Consensus 503 aL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~ 549 (613)
T TIGR01515 503 ALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV 549 (613)
T ss_pred HhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 997554 444544 3479999882 368888888764
No 17
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.7e-46 Score=447.35 Aligned_cols=358 Identities=17% Similarity=0.232 Sum_probs=242.8
Q ss_pred CCCCCCceeeeecccccCC----CCCCCHHHHHH--HHHHHHHcCCCEEEeCCCCCCC-----------CCCCCCCccCC
Q 002611 502 PGTGTGFEILCQGFNWESH----KSGRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLY 564 (900)
Q Consensus 502 ~g~~~~y~i~~~~F~Wd~~----~~GG~l~GI~~--kLdYLk~LGVt~I~L~PIfes~-----------s~hGYd~~Dy~ 564 (900)
..+.+.|++++++|.-... ...|+|+|+++ +|||||+||||+|||+|||++. .+|||+|.||+
T Consensus 148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yf 227 (658)
T PRK03705 148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMF 227 (658)
T ss_pred ccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccc
Confidence 3567889999999973111 12399999997 5999999999999999999974 46999999999
Q ss_pred CcCCCCCCH-----HHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCC
Q 002611 565 NLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNK 637 (900)
Q Consensus 565 ~IDp~lGt~-----edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~ 637 (900)
+|||+|||. +|||+||++||++||+||||+|+|||+.... .+.+..+.+. ..|+ .+...+.+
T Consensus 228 a~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~yy---------~~~~~g~~ 296 (658)
T PRK03705 228 ALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRSYY---------WIREDGDY 296 (658)
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCccce---------EECCCCCc
Confidence 999999995 7999999999999999999999999986421 1111112110 0111 11122223
Q ss_pred CCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEeccccccc--chhHHH--HHHhc-----CCc-eEEeeccc
Q 002611 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--GGYVKD--YLEAT-----EPY-FAVGEYWD 707 (900)
Q Consensus 638 ~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~--~~f~~~--~~~~~-----~p~-~liGEvw~ 707 (900)
..|.+ ..++||+++|+||++|+++++||+++|||||||||+|.++. ..|++. +++++ .++ .++||.|+
T Consensus 297 ~~~~g--~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd 374 (658)
T PRK03705 297 HNWTG--CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWD 374 (658)
T ss_pred CCCCC--ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEeccc
Confidence 22222 34789999999999999999999999999999999999875 234432 33333 345 69999998
Q ss_pred CC--CcccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCccee
Q 002611 708 SL--SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (900)
Q Consensus 708 ~~--~~l~g~m----~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vn 781 (900)
.. .+..+.+ ....+.+|+.|+.|+.+..+.. ...... +.+.. .+.. .....|.++||
T Consensus 375 ~~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~-------~~~~~~-l~gs~--~~~~-------~~~~~p~~siN 437 (658)
T PRK03705 375 IGPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLPL-------GEFAGR-FAASS--DVFK-------RNGRLPSASIN 437 (658)
T ss_pred CCCChhhhcCCCcceEEEchHHHHHHHHHHccCCCcH-------HHHHHH-Hhcch--hhcc-------ccCCCCCeEEE
Confidence 64 2322221 1223456888888875432211 111111 11100 0000 11235778999
Q ss_pred ecccCCCCCcccCCCC--------------------------------------ChHHHHHHHHHHHhCCCeeeeeCCCh
Q 002611 782 FIENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHI 823 (900)
Q Consensus 782 flenHDt~R~~s~~~~--------------------------------------~~~~~klA~allltlPGiP~IYyGdE 823 (900)
||++||+.++...+.. ..++.|+|++++|+++|+||||||||
T Consensus 438 yv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE 517 (658)
T PRK03705 438 LVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDE 517 (658)
T ss_pred EEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHH
Confidence 9999999765442210 02456889999999999999999999
Q ss_pred h--------------------HH------HHHHHHHHHHHHHhCcccccCCe--------eEEeecC------------C
Q 002611 824 F--------------------SH------YRQEIEALLSVRKRNKIHCRSRV--------EIVKAER------------D 857 (900)
Q Consensus 824 f--------------------~W------l~~~~k~Li~lRk~~paL~~G~~--------~~l~~~~------------~ 857 (900)
| +| +++++|+||+|||+||+|+..++ .++..++ .
T Consensus 518 ~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~ 597 (658)
T PRK03705 518 HGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPK 597 (658)
T ss_pred hccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcce
Confidence 6 25 99999999999999999976443 3333222 2
Q ss_pred EEEEEECCEEEEEEeCCCCCCC--CCCCCeEEEE
Q 002611 858 VYAAIIDEKVAMKLGPGHYEPP--SGSQNWSFVT 889 (900)
Q Consensus 858 v~a~~r~~~vlVviNn~~~~~~--~g~~~~~~~~ 889 (900)
.+++...+.++|++|....... ...+.|.+.+
T Consensus 598 ~~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~~ 631 (658)
T PRK03705 598 QLQILLSDRWLIAINATLEVTEIVLPEGEWHAIP 631 (658)
T ss_pred EEEEEECCCEEEEECCCCCCeEEECCCcceEEEE
Confidence 3555556678888886643320 1124577773
No 18
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1e-44 Score=440.41 Aligned_cols=333 Identities=17% Similarity=0.210 Sum_probs=224.4
Q ss_pred CCCceeeeecccccCCCC-CCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHH
Q 002611 505 GTGFEILCQGFNWESHKS-GRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (900)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~-GG~l~GI~~kL-dYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (900)
...|++++++|.-+.+.. -|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+||
T Consensus 242 ~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV 321 (726)
T PRK05402 242 ISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFV 321 (726)
T ss_pred cEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHH
Confidence 467999999987431221 28999999996 99999999999999999987 579999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHH
Q 002611 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (900)
Q Consensus 581 ~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i 660 (900)
++||++||+||||+|+||++.++.. ...|.+...|.. . . ...+.+..| +..++|+.+|+||++|
T Consensus 322 ~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~-~------~-~~~~~~~~w----~~~~~n~~~~~v~~~l 385 (726)
T PRK05402 322 DACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEH-A------D-PREGEHPDW----GTLIFNYGRNEVRNFL 385 (726)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceec-c------C-CcCCccCCC----CCccccCCCHHHHHHH
Confidence 9999999999999999999876531 111222100100 0 0 000111111 2247899999999999
Q ss_pred HHHHHHHHHHhCCCeEEecccccc------------------------cchhHHHHHH---hcCCc-eEEeecccCCCc-
Q 002611 661 KEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLE---ATEPY-FAVGEYWDSLSY- 711 (900)
Q Consensus 661 ~~vl~~W~~e~GIDGfRlD~a~~l------------------------~~~f~~~~~~---~~~p~-~liGEvw~~~~~- 711 (900)
++++++|++++||||||||++.++ ..+||+++.+ +.+|+ ++|||.+...+.
T Consensus 386 ~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~ 465 (726)
T PRK05402 386 VANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGV 465 (726)
T ss_pred HHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCc
Confidence 999999999999999999987533 2358877654 45687 799996543111
Q ss_pred ----cccc--CCCCch-HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecc
Q 002611 712 ----TYGE--MDHNQD-AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (900)
Q Consensus 712 ----l~g~--m~y~~~-~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfle 784 (900)
..+. ++|..+ .+...+..|+...... ..+.. ..+.. .....+..+ .++++
T Consensus 466 ~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~-~~~~~---------------~~~~~------~~~~~~~e~-~~l~~ 522 (726)
T PRK05402 466 TRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIY-RKYHH---------------NELTF------SLLYAYSEN-FVLPL 522 (726)
T ss_pred cccccCCCCCCCceecCCcchHHHHHHhhCccc-ccccc---------------cchhH------HHhHhhhcc-ccCCC
Confidence 0111 111000 0011122222111000 00000 00000 000011111 35789
Q ss_pred cCCCC-----CcccCCCCC----hHHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHHH
Q 002611 785 NHDTG-----STQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEA 833 (900)
Q Consensus 785 nHDt~-----R~~s~~~~~----~~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k~ 833 (900)
|||+. |+...+.++ .+++|++++++||+||+||||||+|++ | +.++||+
T Consensus 523 sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~ 602 (726)
T PRK05402 523 SHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVRD 602 (726)
T ss_pred CCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHHH
Confidence 99995 444444333 257899999999999999999999963 5 8899999
Q ss_pred HHHHHHhCcccccC-----CeeEEee---cCCEEEEEEC-----CEEEEEEeCCCC
Q 002611 834 LLSVRKRNKIHCRS-----RVEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 876 (900)
Q Consensus 834 Li~lRk~~paL~~G-----~~~~l~~---~~~v~a~~r~-----~~vlVviNn~~~ 876 (900)
|++||+++|+|+.| .++++.. ++++++|.|. +.++||+|.+..
T Consensus 603 Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~ 658 (726)
T PRK05402 603 LNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV 658 (726)
T ss_pred HHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999999765 4455554 3479999982 568888898753
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.3e-43 Score=419.90 Aligned_cols=338 Identities=17% Similarity=0.135 Sum_probs=225.4
Q ss_pred CCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHH
Q 002611 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (900)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GG~l~GI~~kL-dYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (900)
...||+++.+|.....+.-|++++++++| +|||+||||+|+||||++.+ .+|||++.||++++++|||.+|||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 47899999998643211127999999997 89999999999999999986 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHH
Q 002611 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (900)
Q Consensus 582 ~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~ 661 (900)
+||++||+||||+|+||++.++.. ...|+|.. ++... + ...+... .| +...+|+.+|+||++|+
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~-~y~~~----~---~~~g~~~---~w-~~~~~~~~~~eVr~~l~ 288 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESG----LAHFDGGP-LYEYA----D---PRKGYHY---DW-NTYIFDYGRNEVVMFLI 288 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhh----hhccCCCc-ceecc----C---CcCCcCC---CC-CCcccCCCCHHHHHHHH
Confidence 999999999999999999876431 11122210 10000 0 0001111 11 22348999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccc----------------------chhHHHHH---HhcCCc-eEEeecccCCCccccc
Q 002611 662 EWLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDYL---EATEPY-FAVGEYWDSLSYTYGE 715 (900)
Q Consensus 662 ~vl~~W~~e~GIDGfRlD~a~~l~----------------------~~f~~~~~---~~~~p~-~liGEvw~~~~~l~g~ 715 (900)
+++++|++++||||||+|++.++- ..||+.+. ++.+|+ ++|||.|.+-+.+..
T Consensus 289 ~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~- 367 (639)
T PRK14706 289 GSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTV- 367 (639)
T ss_pred HHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCccc-
Confidence 999999999999999999987651 24666654 344687 799999875211100
Q ss_pred CCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCC-CcceeecccCCCCCccc-
Q 002611 716 MDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWP-SRAVTFIENHDTGSTQG- 793 (900)
Q Consensus 716 m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P-~~~vnflenHDt~R~~s- 793 (900)
... ...+++..+++.+...+...+.....++.... .. ......|. .....|++|||+.+...
T Consensus 368 -------------~~~-~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~-~~-lt~~~~y~~~e~~il~~SHDev~~~k~ 431 (639)
T PRK14706 368 -------------PTP-YGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHH-HK-LTFFNVYRTSENYVLAISHDEVVHLKK 431 (639)
T ss_pred -------------ccC-CCCccccEeccHHHHHHHHHhccCchhhhhch-hc-cchhhhhhccccEecCCCCccccCCcc
Confidence 000 01122222222222211111111111110000 00 00000111 11223789999987532
Q ss_pred -C---CCCC----hHHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHHHHHHHHHhCcc
Q 002611 794 -H---WRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVRKRNKI 843 (900)
Q Consensus 794 -~---~~~~----~~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k~Li~lRk~~pa 843 (900)
. ..++ .++++++++++||+||+|+||||+||+ | +.+++|+|++||+++|+
T Consensus 432 sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~pa 511 (639)
T PRK14706 432 SMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPD 511 (639)
T ss_pred chHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHH
Confidence 1 1111 356899999999999999999999975 4 78899999999999999
Q ss_pred cccCC-----eeEEee---cCCEEEEEEC-----CEEEEEEeCCC
Q 002611 844 HCRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGH 875 (900)
Q Consensus 844 L~~G~-----~~~l~~---~~~v~a~~r~-----~~vlVviNn~~ 875 (900)
|..|+ ++++.. +++++||.|. +.++||+|.+.
T Consensus 512 L~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~ 556 (639)
T PRK14706 512 WHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP 556 (639)
T ss_pred HhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC
Confidence 98776 445544 3579999982 23888888776
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.3e-42 Score=427.86 Aligned_cols=347 Identities=20% Similarity=0.294 Sum_probs=234.0
Q ss_pred CCCCCceeeeecccccCCC------CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--------------------CCCC
Q 002611 503 GTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSPE 556 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~~------~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes--------------------~s~h 556 (900)
.+...|++++++|..+... ..|+|+|++++|+|||+||||+|||||||+. ..||
T Consensus 450 ~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynW 529 (1111)
T TIGR02102 450 EDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNW 529 (1111)
T ss_pred cceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccccc
Confidence 4567899999999854321 2499999999999999999999999999962 1359
Q ss_pred CCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC-CCCCCCCccCC
Q 002611 557 GYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVAD 627 (900)
Q Consensus 557 GYd~~Dy~~IDp~lGt--------~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~-~~W~~~~~~~~ 627 (900)
||+|.+|++++++||+ .+|||+||++||++||+||||+|+|||+..+. |.+. ..|+..
T Consensus 530 GYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~----- 596 (1111)
T TIGR02102 530 GYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHF----- 596 (1111)
T ss_pred CCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEe-----
Confidence 9999999999999998 48999999999999999999999999987653 2111 111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHH---hcCCc-eEEe
Q 002611 628 DPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY-FAVG 703 (900)
Q Consensus 628 ~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~---~~~p~-~liG 703 (900)
....+.... . .+..+++.++++||++|+++++||+++|||||||||++.+++.++++.+.. +++|+ +++|
T Consensus 597 ---~~~~G~~~~--~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liG 670 (1111)
T TIGR02102 597 ---MDADGTPRT--S-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIG 670 (1111)
T ss_pred ---eCCCCCccc--c-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEE
Confidence 001111110 0 123578999999999999999999999999999999999998888877654 45787 7999
Q ss_pred ecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhh--------ch---hhhhhhhhcCCC-CCC
Q 002611 704 EYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALD--------RC---EYWRLSDEKGKP-PGV 771 (900)
Q Consensus 704 Evw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~--------~~---~~~~l~~~~~~~-~~~ 771 (900)
|.|+... +...+... .....++.... ..+.|+..++..++..+. .+ ....+...+... ...
T Consensus 671 E~W~~~~---g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~ 743 (1111)
T TIGR02102 671 EGWRTYA---GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNF 743 (1111)
T ss_pred ecccccC---CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccc
Confidence 9998510 00000000 00001111111 123444444433332110 00 011111111111 111
Q ss_pred cCCCCCcceeecccCCCCCcccCCCC--------C------hHHHHHHHHHHHhCCCeeeeeCCChh-------------
Q 002611 772 VGWWPSRAVTFIENHDTGSTQGHWRF--------P------GGREMQGYAYILTHPGTPSVFYDHIF------------- 824 (900)
Q Consensus 772 ~~~~P~~~vnflenHDt~R~~s~~~~--------~------~~~~klA~allltlPGiP~IYyGdEf------------- 824 (900)
....|.+.|||+++||+.++...+.. . ..+.++|.+++||.+|+||||+||||
T Consensus 744 ~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~ 823 (1111)
T TIGR02102 744 EADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRT 823 (1111)
T ss_pred ccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccc
Confidence 12467889999999999987443321 0 13778999999999999999999884
Q ss_pred -----------------------------------------HH--------------HHHHHHHHHHHHHhCcccccCCe
Q 002611 825 -----------------------------------------SH--------------YRQEIEALLSVRKRNKIHCRSRV 849 (900)
Q Consensus 825 -----------------------------------------~W--------------l~~~~k~Li~lRk~~paL~~G~~ 849 (900)
+| +++++|.||+|||++|+|+.++.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~ 903 (1111)
T TIGR02102 824 PVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSK 903 (1111)
T ss_pred cccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccch
Confidence 13 48999999999999999976553
Q ss_pred -------eEEeec--------CCEEEEEE----CCEEEEEEeCCC
Q 002611 850 -------EIVKAE--------RDVYAAII----DEKVAMKLGPGH 875 (900)
Q Consensus 850 -------~~l~~~--------~~v~a~~r----~~~vlVviNn~~ 875 (900)
.++... +.+++|.. ++.++|++|...
T Consensus 904 ~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 904 ALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred hhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 333332 35677764 346777777653
No 21
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.6e-42 Score=395.54 Aligned_cols=330 Identities=15% Similarity=0.157 Sum_probs=235.2
Q ss_pred eeeecccccCCCCC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC
Q 002611 510 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 588 (900)
Q Consensus 510 i~~~~F~Wd~~~~G-G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GI 588 (900)
+.+..|. |+.+.| |+|+|++++ ||++ ||++|||+|+|+++++|||++.||++|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4556665 665444 667777766 9999 7999999999999999999999999999999999999999997 8
Q ss_pred EEEEEeccCccccCCCCC-----CCCCccCCCCCC-----CCCCCccCC----------CC---C--CC-CCCCCCCCCC
Q 002611 589 KILGDVVLNHRCAHYQNQ-----NGVWNIFGGRLN-----WDDRAVVAD----------DP---H--FQ-GRGNKSSGDN 642 (900)
Q Consensus 589 rVILD~V~NHt~~d~~~~-----~g~~~~y~g~~~-----W~~~~~~~~----------~~---~--f~-~~~~~~~~~~ 642 (900)
+||+|+|+||||.+|+|+ ++.-++|.+++- |.+...... .+ . +. +.+.+....+
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 999999999999999863 333455655432 332111000 01 1 11 1111222234
Q ss_pred CCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc-----------h---hHHHHHHh-cCCc-eEEeecc
Q 002611 643 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-----------G---YVKDYLEA-TEPY-FAVGEYW 706 (900)
Q Consensus 643 ~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~-----------~---f~~~~~~~-~~p~-~liGEvw 706 (900)
...+||||+.||.|+++|.+++++|+ +.|||||||||+..++. + +++.+.+. ..++ ++|||++
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 58899999999999999999999999 89999999999965443 2 33444442 2455 7999997
Q ss_pred cCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002611 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (900)
Q Consensus 707 ~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (900)
+..++. . ...+....+|+|++...+..++..++...+...+. ..|..++|||+||
T Consensus 233 ~~~~~~-------~-----------~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~sH 287 (470)
T TIGR03852 233 EHYTIQ-------F-----------KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDTH 287 (470)
T ss_pred hhcccc-------c-----------ccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeecC
Confidence 642211 0 00134567899998877766666665444443322 2355668999999
Q ss_pred CCCCc-----------------------------------------------ccCCCCChHHHHHHHHHHHhCCCeeeee
Q 002611 787 DTGST-----------------------------------------------QGHWRFPGGREMQGYAYILTHPGTPSVF 819 (900)
Q Consensus 787 Dt~R~-----------------------------------------------~s~~~~~~~~~klA~allltlPGiP~IY 819 (900)
|.--+ ...++.+.++..+|.+++|++||+|.||
T Consensus 288 Dgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iY 367 (470)
T TIGR03852 288 DGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVY 367 (470)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEE
Confidence 99110 0112335678899999999999999999
Q ss_pred CCChhH---------------------H------------HHHHHHHHHHHHHhCccccc-CCeeEEeecCCEEEEEE--
Q 002611 820 YDHIFS---------------------H------------YRQEIEALLSVRKRNKIHCR-SRVEIVKAERDVYAAII-- 863 (900)
Q Consensus 820 yGdEf~---------------------W------------l~~~~k~Li~lRk~~paL~~-G~~~~l~~~~~v~a~~r-- 863 (900)
||+|++ | ...-+.+||++|+++||+.- |.+.+...++.++++.|
T Consensus 368 y~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~ 447 (470)
T TIGR03852 368 YVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRTN 447 (470)
T ss_pred echhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEEc
Confidence 999863 2 55556668999999999975 88887777889999987
Q ss_pred ---CCEEEEEEeCC
Q 002611 864 ---DEKVAMKLGPG 874 (900)
Q Consensus 864 ---~~~vlVviNn~ 874 (900)
+..+.+++|-+
T Consensus 448 ~~~~~~~~~~~n~~ 461 (470)
T TIGR03852 448 KDGGNKAILTANLK 461 (470)
T ss_pred CCCCceEEEEEecC
Confidence 23455555544
No 22
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=2.7e-41 Score=387.70 Aligned_cols=319 Identities=15% Similarity=0.137 Sum_probs=231.2
Q ss_pred eeeecccccCCCCCCCHHHHHHHHH-HHHHcCCCEEEeCCCCC-CC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHc
Q 002611 510 ILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-SV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (900)
Q Consensus 510 i~~~~F~Wd~~~~GG~l~GI~~kLd-YLk~LGVt~I~L~PIfe-s~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~ 586 (900)
+.+-.|. |+.+ +|||+||+++|| ||++| |++|||+|+|+ ++ +++||+|.||++|||+|||++||++|++
T Consensus 5 ~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 5 VQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred eEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 4444554 5433 489999999999 59999 99999999994 43 6899999999999999999999999995
Q ss_pred CCEEEEEeccCccccCCCC-----CCCCCccCCCCCCCCCCC-----ccCCC-CCCC-------------CCCCCCCCC-
Q 002611 587 GMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRA-----VVADD-PHFQ-------------GRGNKSSGD- 641 (900)
Q Consensus 587 GIrVILD~V~NHt~~d~~~-----~~g~~~~y~g~~~W~~~~-----~~~~~-~~f~-------------~~~~~~~~~- 641 (900)
||+||+|+|+||||.+|+| .+|.-++|.+++-|.+.. .+.+. ..|. .......|.
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 9999999999999999987 344456676654443210 11110 0111 001112233
Q ss_pred CCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc-------------hhHHHHHHhcCC--ceEEeecc
Q 002611 642 NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEATEP--YFAVGEYW 706 (900)
Q Consensus 642 ~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~-------------~f~~~~~~~~~p--~~liGEvw 706 (900)
+...+||||+.||+|+++|.+++++|+ +.|||||||||+..++. +|++.+.+.++. ..+|+|+|
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 347899999999999999999999999 89999999999976554 266665444332 26899987
Q ss_pred cCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002611 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (900)
Q Consensus 707 ~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (900)
...+. ...+ .++.+++|||+++..+..++..++...+...+. ..|.+++|||.||
T Consensus 236 ~y~~~------------~~~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~-------~~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYYKT------------QIEI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWLE-------IRPRNAVTVLDTH 290 (495)
T ss_pred cccCc------------cccc------cccccEEecchhhHHHHHHHHhCCchHHHHHHH-------hCCCccEEeeecC
Confidence 64210 0000 235678999999988888776665444433321 2377789999999
Q ss_pred CCCCc----------ccCC--------------------------------------------CCChHHHHHHHHHHHhC
Q 002611 787 DTGST----------QGHW--------------------------------------------RFPGGREMQGYAYILTH 812 (900)
Q Consensus 787 Dt~R~----------~s~~--------------------------------------------~~~~~~~klA~allltl 812 (900)
|.-.+ ...+ +.+.+++.+|.+++|++
T Consensus 291 DgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~ 370 (495)
T PRK13840 291 DGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFA 370 (495)
T ss_pred CCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcC
Confidence 98654 1111 11235789999999999
Q ss_pred CCeeeeeCCChhH-----------------------H----------HHHHHHHHHHHHHhCcccccCCeeEEeecCCEE
Q 002611 813 PGTPSVFYDHIFS-----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVY 859 (900)
Q Consensus 813 PGiP~IYyGdEf~-----------------------W----------l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~ 859 (900)
||||.||||+|++ | +++-+++||++|+++||| .|++.+...+++.+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~~ 449 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTSL 449 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCeE
Confidence 9999999999852 3 788899999999999999 58887765665555
Q ss_pred EEEE
Q 002611 860 AAII 863 (900)
Q Consensus 860 a~~r 863 (900)
+..+
T Consensus 450 ~~~~ 453 (495)
T PRK13840 450 TLSW 453 (495)
T ss_pred EEEE
Confidence 5444
No 23
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-40 Score=396.20 Aligned_cols=340 Identities=19% Similarity=0.203 Sum_probs=224.4
Q ss_pred CCCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHH
Q 002611 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~k-LdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (900)
.....|++++.+|.-+..+..+++++++++ |+|||+||||+||||||++++ .+|||++.+||+++|+||++++||+|
T Consensus 245 ~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~l 324 (730)
T PRK12568 245 APLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQF 324 (730)
T ss_pred CCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHH
Confidence 445789999999874322223699999998 599999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHH
Q 002611 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (900)
Q Consensus 580 V~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~ 659 (900)
|++||++||+||||+|+||++.++.. ...|++...|.. . ++ ..+.+ ..|..+ .+|+.+|+||++
T Consensus 325 V~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~-~----d~---~~g~~---~~W~~~-~~N~~~peVr~~ 388 (730)
T PRK12568 325 VDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEH-A----DP---REGMH---RDWNTL-IYNYGRPEVTAY 388 (730)
T ss_pred HHHHHHCCCEEEEEeccccCCccccc----cccCCCcccccc-C----CC---cCCcc---CCCCCe-ecccCCHHHHHH
Confidence 99999999999999999999976431 112322111110 0 00 01111 122222 589999999999
Q ss_pred HHHHHHHHHHHhCCCeEEeccccccc------------------------chhHHHHHH---hcCCc-eEEeecccCCCc
Q 002611 660 IKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSY 711 (900)
Q Consensus 660 i~~vl~~W~~e~GIDGfRlD~a~~l~------------------------~~f~~~~~~---~~~p~-~liGEvw~~~~~ 711 (900)
|++++++|+++|||||||+|++..+. .+||+++.+ +.+|+ ++|||.+.+-+-
T Consensus 389 li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~ 468 (730)
T PRK12568 389 LLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPG 468 (730)
T ss_pred HHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcc
Confidence 99999999999999999999875331 247777644 45787 799997543211
Q ss_pred ccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhh--hhhcCCCCCCcCCCCCcceeecccCCC-
Q 002611 712 TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRL--SDEKGKPPGVVGWWPSRAVTFIENHDT- 788 (900)
Q Consensus 712 l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l--~~~~~~~~~~~~~~P~~~vnflenHDt- 788 (900)
... ....+.-+++..+++..+.-+.+.+......+- .+.+.. ++...| +..+.+..|||+
T Consensus 469 vt~--------------p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf--~~~y~~-~e~fvlp~SHDEv 531 (730)
T PRK12568 469 VTA--------------PISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTF--GLVYAF-SERFVLPLSHDEV 531 (730)
T ss_pred ccc--------------cccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhh--hhhhhh-hccEeccCCCccc
Confidence 000 000001122222332222222222221111100 000000 000011 123456889999
Q ss_pred ----CCcccCCCCCh----HHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHHHHHHHH
Q 002611 789 ----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVR 838 (900)
Q Consensus 789 ----~R~~s~~~~~~----~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k~Li~lR 838 (900)
.++...+.++. +.+|..++++||.||.|+||+|+||+ | +.+++|+|++||
T Consensus 532 vhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn~ly 611 (730)
T PRK12568 532 VHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLNAAL 611 (730)
T ss_pred ccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHHHHH
Confidence 34444443332 45688999999999999999999974 5 788999999999
Q ss_pred HhCcccccC-----CeeEEeec---CCEEEEEE-C-----CEEEEEEeCCC
Q 002611 839 KRNKIHCRS-----RVEIVKAE---RDVYAAII-D-----EKVAMKLGPGH 875 (900)
Q Consensus 839 k~~paL~~G-----~~~~l~~~---~~v~a~~r-~-----~~vlVviNn~~ 875 (900)
+++|+|..+ .++++..+ ++|++|.| + +.++||+|-+.
T Consensus 612 ~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~ 662 (730)
T PRK12568 612 RRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP 662 (730)
T ss_pred HhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC
Confidence 999999654 45666654 37999998 2 23666666543
No 24
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.4e-39 Score=384.63 Aligned_cols=336 Identities=16% Similarity=0.164 Sum_probs=216.9
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHH
Q 002611 504 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (900)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GG~l~GI~~k-LdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (900)
....|++++..|. ..+.-|++++++++ |+|||+||||+||||||+++. .+|||+++||++|+++|||+++||+||
T Consensus 395 ~~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LV 472 (897)
T PLN02960 395 SLRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLV 472 (897)
T ss_pred CcEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHH
Confidence 3567888887654 22223899999976 999999999999999999877 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCCcCCCChHHHHH
Q 002611 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (900)
Q Consensus 581 ~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdLN~~np~Vr~~ 659 (900)
++||++||+||||+|+||++.++.+ +. ..|+|..+++ |. +...+..+ ++...+|+.+++||++
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~--~L-~~FDG~~~~Y----------f~~~~~g~~~~---WG~~~fNy~~~eVr~f 536 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSNDCY----------FHSGKRGHHKR---WGTRMFKYGDHEVLHF 536 (897)
T ss_pred HHHHHCCCEEEEEecccccCCcccc--ch-hhcCCCccce----------eecCCCCccCC---CCCcccCCCCHHHHHH
Confidence 9999999999999999999987531 11 1132211111 11 10011111 2346799999999999
Q ss_pred HHHHHHHHHHHhCCCeEEeccccccc-------------------------chhHHHHH---HhcCCc-eEEeecccCCC
Q 002611 660 IKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKDYL---EATEPY-FAVGEYWDSLS 710 (900)
Q Consensus 660 i~~vl~~W~~e~GIDGfRlD~a~~l~-------------------------~~f~~~~~---~~~~p~-~liGEvw~~~~ 710 (900)
|+++++||+++|||||||+|++..+- ..|++.+. .+..|. ++|+|...+-+
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P 616 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP 616 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC
Confidence 99999999999999999999986421 02444433 334566 79999765422
Q ss_pred cccccCCCCchHHHHHHHHHHhhcCC--CcccccchhhHHHHHhhhch--hhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002611 711 YTYGEMDHNQDAHRQRIIDWINAASG--TAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (900)
Q Consensus 711 ~l~g~m~y~~~~~~~~i~~~l~~~~~--~~s~fdf~l~~~l~~~l~~~--~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (900)
-+.. -. ..+| ++...++.....+..++... .-+.+....... ......+.+.++|++||
T Consensus 617 ~vt~---------------P~-~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~-~~~~~~~~~~v~Y~EnH 679 (897)
T PLN02960 617 GLCE---------------PT-SQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTL-VKNKENADKMLSYAENH 679 (897)
T ss_pred Cccc---------------cC-CCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeee-ccCcCCcceEEEEecCc
Confidence 1100 00 0111 11111111111122222110 001111111000 00123556789999999
Q ss_pred CC-----CCcccCCCCC-------hH----------HHHHHHHHHHhCCCeeeeeCCChhH-------------------
Q 002611 787 DT-----GSTQGHWRFP-------GG----------REMQGYAYILTHPGTPSVFYDHIFS------------------- 825 (900)
Q Consensus 787 Dt-----~R~~s~~~~~-------~~----------~~klA~allltlPGiP~IYyGdEf~------------------- 825 (900)
|+ .++...+... .. ....+++++++ ||.|++|||+||+
T Consensus 680 DQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s 758 (897)
T PLN02960 680 NQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLA 758 (897)
T ss_pred CccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccc
Confidence 99 2222222111 00 11123444444 8999999999752
Q ss_pred ---H----------HHHHHHHHHHHHHhCcccccCCeeEEee--cCCEEEEEECCEEEEEEeCCCC
Q 002611 826 ---H----------YRQEIEALLSVRKRNKIHCRSRVEIVKA--ERDVYAAIIDEKVAMKLGPGHY 876 (900)
Q Consensus 826 ---W----------l~~~~k~Li~lRk~~paL~~G~~~~l~~--~~~v~a~~r~~~vlVviNn~~~ 876 (900)
| +.+++|.|++||+++|+|..|...+... ++.|++|.|+ .+++|+|.+..
T Consensus 759 ~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~ 823 (897)
T PLN02960 759 NRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPT 823 (897)
T ss_pred cCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCC
Confidence 5 8889999999999999998776655444 3479999995 57888887653
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.7e-39 Score=402.41 Aligned_cols=327 Identities=17% Similarity=0.230 Sum_probs=218.0
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHH
Q 002611 504 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (900)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GG~l~GI~~k-LdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (900)
..+.|++++.+|. .+|++++++++ |||||+||||+||||||++++ .+|||+++|||+++++|||++|||+||
T Consensus 747 p~~IYEvHvgsf~-----~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lV 821 (1224)
T PRK14705 747 PMSVYEVHLGSWR-----LGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLV 821 (1224)
T ss_pred CcEEEEEEecccc-----cCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHH
Confidence 3578999999986 26889999988 599999999999999999987 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHH
Q 002611 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (900)
Q Consensus 581 ~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i 660 (900)
++||++||+||||+|+||++.+... ...|+|...|... ++ ..+... .| +...+|+.+++||++|
T Consensus 822 d~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~-----d~---~~g~~~---~W-g~~~fn~~~~eVr~fl 885 (1224)
T PRK14705 822 DSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHA-----DP---ALGEHP---DW-GTLIFDFGRTEVRNFL 885 (1224)
T ss_pred HHHHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccC-----Cc---ccCCCC---CC-CCceecCCCHHHHHHH
Confidence 9999999999999999999876421 0112221111100 00 001111 12 2346999999999999
Q ss_pred HHHHHHHHHHhCCCeEEecccccc------------------------cchhHHHHHHh---cCCc-eEEeecccCCCcc
Q 002611 661 KEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLEA---TEPY-FAVGEYWDSLSYT 712 (900)
Q Consensus 661 ~~vl~~W~~e~GIDGfRlD~a~~l------------------------~~~f~~~~~~~---~~p~-~liGEvw~~~~~l 712 (900)
+++++||+++|||||||+|++..+ ..+|++++.+. ..|. ++|+|.+..-+..
T Consensus 886 i~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~v 965 (1224)
T PRK14705 886 VANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGV 965 (1224)
T ss_pred HHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCc
Confidence 999999999999999999998654 13477776543 3677 8999987652211
Q ss_pred -----ccc----CCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 002611 713 -----YGE----MDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (900)
Q Consensus 713 -----~g~----m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 783 (900)
.|- +.|+.+. ...+.+|+.... ....++.. .+. ..+.. .| ...+.+.
T Consensus 966 t~p~~~GGlGFd~kWnmgw-mhd~l~Y~~~dp-~~r~~~~~---~lt--------f~~~y----------a~-~e~fvl~ 1021 (1224)
T PRK14705 966 TAPTSHGGLGFGLKWNMGW-MHDSLKYASEDP-INRKWHHG---TIT--------FSLVY----------AF-TENFLLP 1021 (1224)
T ss_pred cccccCCCccCCcEecchh-hHHHHHHhhhCc-chhhcccc---hHH--------HHHHH----------Hh-hcCEecc
Confidence 111 1111111 112223332110 00000000 000 00000 01 1123346
Q ss_pred ccCCCCC-----cccCCCCC----hHHHHHHHHHHHhCCCeeeeeCCChhH------------H----------HHHHHH
Q 002611 784 ENHDTGS-----TQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIE 832 (900)
Q Consensus 784 enHDt~R-----~~s~~~~~----~~~~klA~allltlPGiP~IYyGdEf~------------W----------l~~~~k 832 (900)
.|||... +.....++ ...++++++++|++||+|+||||+||+ | +..++|
T Consensus 1022 ~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~r 1101 (1224)
T PRK14705 1022 ISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTK 1101 (1224)
T ss_pred cccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHH
Confidence 6899742 11112211 235689999999999999999999974 4 788999
Q ss_pred HHHHHHHhCcccccC-----CeeEEee---cCCEEEEEE----CCEEEEEEeCCC
Q 002611 833 ALLSVRKRNKIHCRS-----RVEIVKA---ERDVYAAII----DEKVAMKLGPGH 875 (900)
Q Consensus 833 ~Li~lRk~~paL~~G-----~~~~l~~---~~~v~a~~r----~~~vlVviNn~~ 875 (900)
.|++||+++|+|..+ .++++.. +++|++|.| ++.++||+|-+.
T Consensus 1102 dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp 1156 (1224)
T PRK14705 1102 DLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG 1156 (1224)
T ss_pred HHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC
Confidence 999999999999643 4666643 357999998 235667676543
No 26
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-40 Score=386.53 Aligned_cols=357 Identities=19% Similarity=0.258 Sum_probs=229.1
Q ss_pred hhhhhcccccccccCccccccccCCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Q 002611 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (900)
Q Consensus 470 a~~yqiF~~~~drF~~~~~~~~p~~~~~~r~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PI 549 (900)
+++|||+| +||.++.... ...++ + +|||+||+++||||++|||++|||+||
T Consensus 1 ~viyqi~~---~~f~d~~~~~-----------------------~~~~~--G-~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi 51 (505)
T COG0366 1 AVIYQIYP---DRFADSNGSN-----------------------GPDYD--G-GGDLKGITEKLDYLKELGVDAIWLSPI 51 (505)
T ss_pred CcEEEEec---hhhcCCCCCC-----------------------ccCCC--C-cccHHhHHHhhhHHHHhCCCEEEeCCC
Confidence 47899999 9997643321 11111 1 499999999999999999999999999
Q ss_pred CCC-CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCC----CCCccCC-CCCCCCCCC
Q 002611 550 TES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN----GVWNIFG-GRLNWDDRA 623 (900)
Q Consensus 550 fes-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~----g~~~~y~-g~~~W~~~~ 623 (900)
+++ .++|||++.||+.|||+|||++||++||++||++||+||+|+|+||++.+|+++. +.-.+.. ..+.|.+..
T Consensus 52 ~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~ 131 (505)
T COG0366 52 FESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPD 131 (505)
T ss_pred CCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCc
Confidence 999 6999999999999999999999999999999999999999999999999997421 1111111 224453321
Q ss_pred -----ccCCCCCCCCC-------CCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccc-----
Q 002611 624 -----VVADDPHFQGR-------GNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----- 686 (900)
Q Consensus 624 -----~~~~~~~f~~~-------~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~----- 686 (900)
.......|.+. +.+..+.+...+||||+.||+||+++.+++++|+ ++||||||+|++++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~ 210 (505)
T COG0366 132 PDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLP 210 (505)
T ss_pred ccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCC
Confidence 11111222221 1233344568899999999999999999999999 69999999999999988
Q ss_pred ------hhHHHHHHhc---CCc-eEEeecccCCCcccc------cCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHH
Q 002611 687 ------GYVKDYLEAT---EPY-FAVGEYWDSLSYTYG------EMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILH 750 (900)
Q Consensus 687 ------~f~~~~~~~~---~p~-~liGEvw~~~~~l~g------~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~ 750 (900)
.++..+.+.. .+. +..++.+.......+ .+++.. ... .+...|++.....-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~ 278 (505)
T COG0366 211 PSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDFADNTSF---TNP---------ELSMLFDFSHVGLDF 278 (505)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhhhhccch---hhh---------hHhhccccccccccc
Confidence 5555444332 222 222333332211100 011110 000 111222222210000
Q ss_pred ------Hhh-hchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCcccCCCCCh----HHHHHHHHHHHhCCCeeeee
Q 002611 751 ------SAL-DRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVF 819 (900)
Q Consensus 751 ------~~l-~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~s~~~~~~----~~~klA~allltlPGiP~IY 819 (900)
... ............. . .......|..|||++|+.+.++.+. ...+++++++++++|+|+||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy 351 (505)
T COG0366 279 EALAPLDAEELKEILADWPLAVN----L---NDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIY 351 (505)
T ss_pred cccCcccHHHHHHHHHHHHhhhc----c---ccCchhhhhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEe
Confidence 000 0000011000000 0 0011234799999999999876544 67788889999999999999
Q ss_pred CCChhH------------------------------------------------H------------------------H
Q 002611 820 YDHIFS------------------------------------------------H------------------------Y 827 (900)
Q Consensus 820 yGdEf~------------------------------------------------W------------------------l 827 (900)
||+|.+ | +
T Consensus 352 ~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~ 431 (505)
T COG0366 352 YGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESL 431 (505)
T ss_pred cccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccH
Confidence 998620 1 7
Q ss_pred HHHHHHHHHHHHhC-cccccCCeeEEeecC--CEEEEEEC--CEEEEEEeCCC
Q 002611 828 RQEIEALLSVRKRN-KIHCRSRVEIVKAER--DVYAAIID--EKVAMKLGPGH 875 (900)
Q Consensus 828 ~~~~k~Li~lRk~~-paL~~G~~~~l~~~~--~v~a~~r~--~~vlVviNn~~ 875 (900)
+.++++|+++|+.+ ..+..|......... .++++.|. ++.+++++|.+
T Consensus 432 ~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 484 (505)
T COG0366 432 FNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLS 484 (505)
T ss_pred HHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCC
Confidence 78999999999999 455667444444433 68888883 33355555543
No 27
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.7e-39 Score=390.70 Aligned_cols=360 Identities=16% Similarity=0.199 Sum_probs=236.9
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH-------HHHHHHcCCCEEEeCCCCCCC------------------
Q 002611 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV------------------ 553 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~----~~GG~l~GI~~k-------LdYLk~LGVt~I~L~PIfes~------------------ 553 (900)
.+...||+++++|..... .+.|+|.|++++ |+||++||||+|+|||||+..
T Consensus 251 ~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~ 330 (898)
T TIGR02103 251 ADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSK 330 (898)
T ss_pred cccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhh
Confidence 456789999999975221 245899999875 777778899999999999763
Q ss_pred ----------------------------------------------CCCCCCCccCCCcCCCCCCH-------HHHHHHH
Q 002611 554 ----------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVV 580 (900)
Q Consensus 554 ----------------------------------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~LV 580 (900)
.||||+|.+|+.++..|++. .|||+||
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV 410 (898)
T TIGR02103 331 LCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMV 410 (898)
T ss_pred hhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHH
Confidence 27999999999999999984 6999999
Q ss_pred HHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHH
Q 002611 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (900)
Q Consensus 581 ~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i 660 (900)
++||++||+||||+|+|||+..++..... +....+|+... ....+.+. ...+..+++.++++||++|
T Consensus 411 ~alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~~P~YY~r-------~~~~G~~~---n~~~~~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 411 QALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKIVPGYYHR-------LNEDGGVE---NSTCCSNTATEHRMMAKLI 477 (898)
T ss_pred HHHHHCCCEEEEEeecccccccCccCccc---ccccCcHhhEe-------eCCCCCee---cCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999876532221 21111111100 00111111 1123356899999999999
Q ss_pred HHHHHHHHHHhCCCeEEecccccccchhHHHHHHh---cCCc-eEEeecccCCCc------cc---c-----cCCCCchH
Q 002611 661 KEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYWDSLSY------TY---G-----EMDHNQDA 722 (900)
Q Consensus 661 ~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~---~~p~-~liGEvw~~~~~------l~---g-----~m~y~~~~ 722 (900)
++++++|+++|||||||||++.+++.+||+++.++ ++|+ +++||.|+.... .. . .+.+..+.
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~ 557 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDR 557 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccc
Confidence 99999999999999999999999999999887654 5777 799999984211 11 1 12334455
Q ss_pred HHHHHHHH--Hhh------cCCCcccc-cch----------------hhHHHHHhhhchh-hhhhhhh---------cCC
Q 002611 723 HRQRIIDW--INA------ASGTAGAF-DVT----------------TKGILHSALDRCE-YWRLSDE---------KGK 767 (900)
Q Consensus 723 ~~~~i~~~--l~~------~~~~~s~f-df~----------------l~~~l~~~l~~~~-~~~l~~~---------~~~ 767 (900)
+|++|+.- +.. ..|+.+.. ..+ +.+.++..+.++- ...+.+. ...
T Consensus 558 ~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y 637 (898)
T TIGR02103 558 LRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDY 637 (898)
T ss_pred hhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccccccccccccccccccc
Confidence 66666531 111 01111110 000 0111222211110 0000000 000
Q ss_pred --CCCCcCCCCCcceeecccCCCCCcccCCC------CC----hHHHHHHHHHHHhCCCeeeeeCCChh-----------
Q 002611 768 --PPGVVGWWPSRAVTFIENHDTGSTQGHWR------FP----GGREMQGYAYILTHPGTPSVFYDHIF----------- 824 (900)
Q Consensus 768 --~~~~~~~~P~~~vnflenHDt~R~~s~~~------~~----~~~~klA~allltlPGiP~IYyGdEf----------- 824 (900)
.+......|.+.|||++.||+..+...+. .. .++.++|++++|+..|+|+|++|+||
T Consensus 638 ~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY 717 (898)
T TIGR02103 638 NGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSY 717 (898)
T ss_pred CcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCC
Confidence 00012235778999999999987544321 11 23457999999999999999999995
Q ss_pred ---------H---------------------H---------------------HHHHHHHHHHHHHhCcccccCC-----
Q 002611 825 ---------S---------------------H---------------------YRQEIEALLSVRKRNKIHCRSR----- 848 (900)
Q Consensus 825 ---------~---------------------W---------------------l~~~~k~Li~lRk~~paL~~G~----- 848 (900)
+ | ..++|+.||+||+.+|+|+-++
T Consensus 718 ~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~ 797 (898)
T TIGR02103 718 DSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVM 797 (898)
T ss_pred cCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHH
Confidence 1 2 5889999999999999998543
Q ss_pred --eeEEeec----CCEEEEEEC--------------CEEEEEEeCCC
Q 002611 849 --VEIVKAE----RDVYAAIID--------------EKVAMKLGPGH 875 (900)
Q Consensus 849 --~~~l~~~----~~v~a~~r~--------------~~vlVviNn~~ 875 (900)
+.++... .++++|..+ +.++|++|.+.
T Consensus 798 ~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~ 844 (898)
T TIGR02103 798 KRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARP 844 (898)
T ss_pred hheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCC
Confidence 3444432 478888652 23677777654
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=7.3e-37 Score=364.19 Aligned_cols=333 Identities=17% Similarity=0.198 Sum_probs=218.3
Q ss_pred CCCceeeeecccccCCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHH
Q 002611 505 GTGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (900)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GG~l~GI~-~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (900)
...|++++..+. ..+.-|++++++ ++|+|||+||||+||||||++++ .+|||++.||++++++|||+++||+||+
T Consensus 230 ~~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd 307 (758)
T PLN02447 230 LRIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLID 307 (758)
T ss_pred CEEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHH
Confidence 456788886543 222238999975 56999999999999999999987 5799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHH
Q 002611 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (900)
Q Consensus 582 ~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~ 661 (900)
+||++||+||||+|+||++.++.. | ...|++.. ..+|.... ..+...++...+|+.+++||++|+
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~~----------~~Yf~~~~--~g~~~~w~~~~~N~~~~eVr~fLl 372 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGTD----------GSYFHSGP--RGYHWLWDSRLFNYGNWEVLRFLL 372 (758)
T ss_pred HHHHCCCEEEEEeccccccccccc--c-ccccCCCC----------ccccccCC--CCCcCcCCCceecCCCHHHHHHHH
Confidence 999999999999999999976531 1 11122210 01111110 001111234469999999999999
Q ss_pred HHHHHHHHHhCCCeEEeccccccc-------ch-------------------hHHHH---HHhcCCc-eEEeecccCCCc
Q 002611 662 EWLCWLRNEIGYDGWRLDFVRGFW-------GG-------------------YVKDY---LEATEPY-FAVGEYWDSLSY 711 (900)
Q Consensus 662 ~vl~~W~~e~GIDGfRlD~a~~l~-------~~-------------------f~~~~---~~~~~p~-~liGEvw~~~~~ 711 (900)
+++++|+++|||||||||++..+- .+ |++.+ +.+..|. ++|||.+.+-+.
T Consensus 373 ~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~ 452 (758)
T PLN02447 373 SNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPT 452 (758)
T ss_pred HHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 999999999999999999997551 11 34433 3445677 799998765321
Q ss_pred ccccCCCCchHHHHHHHHHHhhcCCCcccccchhh----HHHHHhhhch--hhhhhhhhcCCCCCCcCCCCCcceeeccc
Q 002611 712 TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK----GILHSALDRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIEN 785 (900)
Q Consensus 712 l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~----~~l~~~l~~~--~~~~l~~~~~~~~~~~~~~P~~~vnflen 785 (900)
+... . ..+|+ .||+.+. ....+.+... ..+.+..... .....+|..+.|.|.+|
T Consensus 453 l~~p---------------~-~~GGl--GFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~--sl~~r~~~E~~I~y~eS 512 (758)
T PLN02447 453 LCRP---------------V-QEGGV--GFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH--TLTNRRYTEKCVAYAES 512 (758)
T ss_pred cccc---------------C-CCCcC--CcceEECCccchHHHHHHhhCCCcccCHHHHHH--HHhcccccCceEeccCC
Confidence 1100 0 01111 2332221 1111111111 1111111100 00112455688999999
Q ss_pred CCCCCcc--c------------CCCCC----------hHHHHHHHHHHHhCCCe-eeeeCCChhH---------------
Q 002611 786 HDTGSTQ--G------------HWRFP----------GGREMQGYAYILTHPGT-PSVFYDHIFS--------------- 825 (900)
Q Consensus 786 HDt~R~~--s------------~~~~~----------~~~~klA~allltlPGi-P~IYyGdEf~--------------- 825 (900)
||+...- + .+... ...-|++.+++|++||. +++|+|.||+
T Consensus 513 HDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws 592 (758)
T PLN02447 513 HDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWS 592 (758)
T ss_pred cCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccC
Confidence 9997541 1 11110 01125677889999999 7999999863
Q ss_pred -------H------------HHHHHHHHHHHHHhCcccccCCeeEEe--ecCCEEEEEECCEEEEEEeCCC
Q 002611 826 -------H------------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKVAMKLGPGH 875 (900)
Q Consensus 826 -------W------------l~~~~k~Li~lRk~~paL~~G~~~~l~--~~~~v~a~~r~~~vlVviNn~~ 875 (900)
| +.+|+|.|++|++++++|..|...+.. .++.|++|.|++ +++|+|-..
T Consensus 593 ~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p 662 (758)
T PLN02447 593 YDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFHP 662 (758)
T ss_pred cccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCCC
Confidence 3 677999999999999999866443332 345899999974 666666553
No 29
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.7e-37 Score=373.39 Aligned_cols=348 Identities=16% Similarity=0.191 Sum_probs=226.0
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH-------HHHHHHcCCCEEEeCCCCCCC------------------
Q 002611 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV------------------ 553 (900)
Q Consensus 503 g~~~~y~i~~~~F~Wd~~----~~GG~l~GI~~k-------LdYLk~LGVt~I~L~PIfes~------------------ 553 (900)
.+...||+++++|.-... .+.|+|.|++++ |+|||+||||+|+|||+|+..
T Consensus 338 ~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~ 417 (970)
T PLN02877 338 SDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELE 417 (970)
T ss_pred cccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhc
Confidence 456789999999985322 234899998876 777777799999999999852
Q ss_pred ---------------------CCCCCCCccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccCccccCCCC
Q 002611 554 ---------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (900)
Q Consensus 554 ---------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~ 605 (900)
.||||+|.+|+.++++|++. .|||+||++||++||+||||+|+|||+..+++
T Consensus 418 ~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 418 KLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred cccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 57999999999999999983 58999999999999999999999999875542
Q ss_pred CCCCCccCCCCCC-CCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 606 QNGVWNIFGGRLN-WDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 606 ~~g~~~~y~g~~~-W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
... +.+....+ |+.. .+..+.+. ...+..+.+.++++||++|++.++||+++|||||||||+|.++
T Consensus 498 ~~~--s~ld~~vP~YY~r--------~~~~G~~~---ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 498 DEN--SVLDKIVPGYYLR--------RNSDGFIE---NSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred chh--hcccCCCCCceEE--------ECCCCCcc---cCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 110 11111111 1100 01111111 1122345678999999999999999999999999999999999
Q ss_pred cchhHHHH---HHhcC--------Cc-eEEeecccCCCc---------ccc-----cCCCCchHHHHHHHH---HHh-hc
Q 002611 685 WGGYVKDY---LEATE--------PY-FAVGEYWDSLSY---------TYG-----EMDHNQDAHRQRIID---WIN-AA 734 (900)
Q Consensus 685 ~~~f~~~~---~~~~~--------p~-~liGEvw~~~~~---------l~g-----~m~y~~~~~~~~i~~---~l~-~~ 734 (900)
+.+.+.++ ++++. |. +++||.|+...- .+. .+.+..|.+|++|+. |-. ..
T Consensus 565 ~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~ 644 (970)
T PLN02877 565 MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQ 644 (970)
T ss_pred cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCC
Confidence 99877654 34442 54 799999974210 000 134444556777663 200 01
Q ss_pred CCCccc-cc------c----h-------hhHHHHHhhhchh-hhhhhhhcC-----C----CCC---CcCCCCCcceeec
Q 002611 735 SGTAGA-FD------V----T-------TKGILHSALDRCE-YWRLSDEKG-----K----PPG---VVGWWPSRAVTFI 783 (900)
Q Consensus 735 ~~~~s~-fd------f----~-------l~~~l~~~l~~~~-~~~l~~~~~-----~----~~~---~~~~~P~~~vnfl 783 (900)
.|+.+. +. . . +...++..+.++- ...+.+.-+ . ..+ -....|.+.|||+
T Consensus 645 qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYv 724 (970)
T PLN02877 645 QGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYV 724 (970)
T ss_pred CceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeee
Confidence 122211 00 0 0 1112222222110 000000000 0 000 1223577899999
Q ss_pred ccCCCCCcccCCC----C--C----hHHHHHHHHHHHhCCCeeeeeCCChh--------------------HH-------
Q 002611 784 ENHDTGSTQGHWR----F--P----GGREMQGYAYILTHPGTPSVFYDHIF--------------------SH------- 826 (900)
Q Consensus 784 enHDt~R~~s~~~----~--~----~~~~klA~allltlPGiP~IYyGdEf--------------------~W------- 826 (900)
+.||+..+...+. . . .++.++|++++|+.+|+|+|+.|+|| +|
T Consensus 725 s~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~ 804 (970)
T PLN02877 725 SAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNW 804 (970)
T ss_pred eccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCcc
Confidence 9999987544321 0 1 24567999999999999999999996 12
Q ss_pred -----------------------------------HHHHHHHHHHHHHhCcccccCC-------eeEEeec----CCEEE
Q 002611 827 -----------------------------------YRQEIEALLSVRKRNKIHCRSR-------VEIVKAE----RDVYA 860 (900)
Q Consensus 827 -----------------------------------l~~~~k~Li~lRk~~paL~~G~-------~~~l~~~----~~v~a 860 (900)
..++|+.||+||+.+|+|+-++ +.++... .++++
T Consensus 805 ~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~ 884 (970)
T PLN02877 805 GVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIV 884 (970)
T ss_pred ccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEE
Confidence 3788999999999999998553 3444442 27888
Q ss_pred EEE
Q 002611 861 AII 863 (900)
Q Consensus 861 ~~r 863 (900)
|..
T Consensus 885 ~~i 887 (970)
T PLN02877 885 MSI 887 (970)
T ss_pred EEE
Confidence 865
No 30
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-37 Score=360.63 Aligned_cols=371 Identities=24% Similarity=0.323 Sum_probs=252.6
Q ss_pred CCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHH
Q 002611 500 ISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKD 578 (900)
Q Consensus 500 ~~~g~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~ 578 (900)
.|+.+...|+|+.+.|.|+....-|+++||++||||||+||||+|||+||+++. .+|||++.||+.|+|+|||++||++
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~ 92 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKE 92 (545)
T ss_pred hhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHH
Confidence 577778889999999987655444999999999999999999999999999999 5699999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEeccCccccCCCCCCCCCcc---CCCCCCCCCCC-----------------ccCCCCCCCCCCCCC
Q 002611 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI---FGGRLNWDDRA-----------------VVADDPHFQGRGNKS 638 (900)
Q Consensus 579 LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~---y~g~~~W~~~~-----------------~~~~~~~f~~~~~~~ 638 (900)
||+++|++||+||+|+|+||++..++|+...... |...+.|++.. .....+...+...++
T Consensus 93 Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~ 172 (545)
T KOG0471|consen 93 LILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYY 172 (545)
T ss_pred HHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCccccccccee
Confidence 9999999999999999999999888764322111 22224443322 111111222234455
Q ss_pred CCCCCCCCCCcCCCChHHHHHHHHHHH-HHHHHhCCCeEEecccccccchhHHHHHHhcCCceEEeecccCCCccc-ccC
Q 002611 639 SGDNFHAAPNIDHSQDFVRKDIKEWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEM 716 (900)
Q Consensus 639 ~~~~~~~lpdLN~~np~Vr~~i~~vl~-~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~~p~~liGEvw~~~~~l~-g~m 716 (900)
.+.....+||||++||+|++.|.++++ +|. ++|+||||+|++.++..+++. ..-...|.+-.||.|.+..+.. ...
T Consensus 173 l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~ 250 (545)
T KOG0471|consen 173 LGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYN 250 (545)
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcccc
Confidence 566668899999999999999999999 777 999999999999999988876 3333456688999998765432 233
Q ss_pred CCCchHHH--HHHHHHHhhcCCCcccccchhhHHHHHhhhch--hhhhhhhhcCCCC-----------------------
Q 002611 717 DHNQDAHR--QRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPP----------------------- 769 (900)
Q Consensus 717 ~y~~~~~~--~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~--~~~~l~~~~~~~~----------------------- 769 (900)
+|..+... ..+..+..........+.+.-...+.-..... .++++........
T Consensus 251 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 330 (545)
T KOG0471|consen 251 DYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYK 330 (545)
T ss_pred cccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHH
Confidence 34333111 11111111111122222222111110000000 0111100000000
Q ss_pred ----CCcCCCC---CcceeecccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeeeeCCChhH-----------------
Q 002611 770 ----GVVGWWP---SRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS----------------- 825 (900)
Q Consensus 770 ----~~~~~~P---~~~vnflenHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYyGdEf~----------------- 825 (900)
..+...+ ..+...++|||..|..+.++ .+..++..++++|+||+|++|||+|++
T Consensus 331 ~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~ 408 (545)
T KOG0471|consen 331 EVEVDWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLM 408 (545)
T ss_pred HHHHHHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHh
Confidence 0000111 12445678888888887775 344778889999999999999999841
Q ss_pred -------H------------------------------------HHHHHHHHHHHHHhCcccccCCeeEEeecCCEEEEE
Q 002611 826 -------H------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAI 862 (900)
Q Consensus 826 -------W------------------------------------l~~~~k~Li~lRk~~paL~~G~~~~l~~~~~v~a~~ 862 (900)
| +...++++..+|+....+..|.......+++++++.
T Consensus 409 ~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~~~ 488 (545)
T KOG0471|consen 409 QSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFSFS 488 (545)
T ss_pred ccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEEEE
Confidence 2 788999999999998878889888888888999998
Q ss_pred E---CCEEEEEEeCC
Q 002611 863 I---DEKVAMKLGPG 874 (900)
Q Consensus 863 r---~~~vlVviNn~ 874 (900)
| +...+++++|.
T Consensus 489 r~~~~~~~~~~~~~~ 503 (545)
T KOG0471|consen 489 RNWDGNERFIAVLNF 503 (545)
T ss_pred eccCCCceEEEEEec
Confidence 8 33444444444
No 31
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.7e-35 Score=340.47 Aligned_cols=348 Identities=13% Similarity=0.054 Sum_probs=251.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCC---------C-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 530 KEKATELSSLGFSVIWLPPPTES---------V-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes---------~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
....+||++|||++|||+|++++ + .++|||+.|| .|||.|||++||++||++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 55679999999999999999999 5 4789999995 99999999999999999999999999999999999
Q ss_pred ccCCCC---CCCCCccCCCCC-----------CCCCCCcc---------------------CCC--CCCCCCC-----C-
Q 002611 600 CAHYQN---QNGVWNIFGGRL-----------NWDDRAVV---------------------ADD--PHFQGRG-----N- 636 (900)
Q Consensus 600 ~~d~~~---~~g~~~~y~g~~-----------~W~~~~~~---------------------~~~--~~f~~~~-----~- 636 (900)
|..|+. ..+ +.+|.|.| -|.+.... +.. .-|..++ +
T Consensus 156 s~ghdF~lAr~~-~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGADFRLAELA-HGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcchHHHhhc-CCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 999872 223 56676655 44432211 110 1221111 1
Q ss_pred ---------------CCCCCCCCCCCCcCCCChH--HHHHHH-HHHHHHHHHhCCCeEEecccccc-------------c
Q 002611 637 ---------------KSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRGF-------------W 685 (900)
Q Consensus 637 ---------------~~~~~~~~~lpdLN~~np~--Vr~~i~-~vl~~W~~e~GIDGfRlD~a~~l-------------~ 685 (900)
+....++..+|+||+.||. ||+.|+ +++++|+ +.|+||||+|++..+ .
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 1112356899999999999 999999 8999999 999999999997532 1
Q ss_pred chhHHH---HHH--hcCCc-eEEeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhh
Q 002611 686 GGYVKD---YLE--ATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYW 759 (900)
Q Consensus 686 ~~f~~~---~~~--~~~p~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~ 759 (900)
..+.++ ++. ..++. ++++|.--. .+.+..|+. ++.+..|||..+..+..++..++..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 234333 333 22465 899885211 467888887 3889999999988888887777654
Q ss_pred hhhhhcCCCCCCcCCCCCcceeecccCCCCC-------------------------------------------------
Q 002611 760 RLSDEKGKPPGVVGWWPSRAVTFIENHDTGS------------------------------------------------- 790 (900)
Q Consensus 760 ~l~~~~~~~~~~~~~~P~~~vnflenHDt~R------------------------------------------------- 790 (900)
-+...+...... +--+.+.++|+.|||.-.
T Consensus 377 pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 444333211111 111346689999999810
Q ss_pred cc----------------------cCCCCChHHHHHHHHHHHh----CCCeeeeeCC--------------ChhH-----
Q 002611 791 TQ----------------------GHWRFPGGREMQGYAYILT----HPGTPSVFYD--------------HIFS----- 825 (900)
Q Consensus 791 ~~----------------------s~~~~~~~~~klA~alllt----lPGiP~IYyG--------------dEf~----- 825 (900)
+. ..+..+..+++++.+++++ +||+|+|||| +|++
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 00 0011245678999999999 9999999999 6642
Q ss_pred H-----------------------------------------HHHHHHHHHHHHHhCcccccCCeeEEeecC-CEEEEEE
Q 002611 826 H-----------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAAII 863 (900)
Q Consensus 826 W-----------------------------------------l~~~~k~Li~lRk~~paL~~G~~~~l~~~~-~v~a~~r 863 (900)
| +...+++++++||+++++..|.+.++.+.+ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 2 899999999999999999999999888765 7888876
Q ss_pred ----CCEEEEEEeCCCCCCC--------------------------CCCCCeEEEEcCCCeEEEE
Q 002611 864 ----DEKVAMKLGPGHYEPP--------------------------SGSQNWSFVTEGRDYKVWE 898 (900)
Q Consensus 864 ----~~~vlVviNn~~~~~~--------------------------~g~~~~~~~~~g~~~~vw~ 898 (900)
++..+++++|.+..+. ...+.+.+.+++++|.+++
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 2255666666544320 1334689999999998776
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-36 Score=357.80 Aligned_cols=324 Identities=22% Similarity=0.307 Sum_probs=215.4
Q ss_pred CCCCCCCCCCCceeeeecccccCCC----CCCCHHHHHHH--HHHHHHcCCCEEEeCCCCCCC-----------CCCCCC
Q 002611 497 PAKISPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYM 559 (900)
Q Consensus 497 ~~r~~~g~~~~y~i~~~~F~Wd~~~----~GG~l~GI~~k--LdYLk~LGVt~I~L~PIfes~-----------s~hGYd 559 (900)
+.+.-+.+.+.||+++++|+--.++ ..|++.|++++ |+|||+||||+|+|+||+... .||||+
T Consensus 164 ~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYd 243 (697)
T COG1523 164 PPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYD 243 (697)
T ss_pred CCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCC
Confidence 3345567788999999999842222 34999999999 999999999999999999865 689999
Q ss_pred CccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCC-CCCCCCCccCCCCCC
Q 002611 560 PRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHF 631 (900)
Q Consensus 560 ~~Dy~~IDp~lGt~-------edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f 631 (900)
|..||+++++|.+. .|||.||+++|++||.||||+|||||+.... .|.-..|++- ...+. ..
T Consensus 244 P~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~--~g~t~~f~~id~~~Yy-r~------- 313 (697)
T COG1523 244 PLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNE--LGPTLSFRGIDPNYYY-RL------- 313 (697)
T ss_pred cccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccC--cCcccccccCCcCceE-EE-------
Confidence 99999999999764 4999999999999999999999999985421 2233334331 00000 00
Q ss_pred CCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhH-----HHHHHhc--CCc----e
Q 002611 632 QGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEAT--EPY----F 700 (900)
Q Consensus 632 ~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~-----~~~~~~~--~p~----~ 700 (900)
+..+.+..+ ..+.-.||.++|+||++|+|.|+||+++++|||||||.|..+..+.. ..+..++ .|. -
T Consensus 314 ~~dg~~~N~--TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~k 391 (697)
T COG1523 314 DPDGYYSNG--TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVK 391 (697)
T ss_pred CCCCCeecC--CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCce
Confidence 011111100 11223599999999999999999999999999999999986655433 1223322 221 3
Q ss_pred EEeecccCC--CcccccCC--CC----chHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCc
Q 002611 701 AVGEYWDSL--SYTYGEMD--HN----QDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVV 772 (900)
Q Consensus 701 liGEvw~~~--~~l~g~m~--y~----~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~ 772 (900)
+|+|.|+-. .|..|... +. .+.+++.+++|+.+..+.. ..+...+.+.. ++. ...
T Consensus 392 liAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~--------~~~a~rl~gS~--d~~-------~~~ 454 (697)
T COG1523 392 LIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLV--------GEFAKRLAGSS--DLY-------KRN 454 (697)
T ss_pred eeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccH--------HHHHHHhhcCc--chh-------hcc
Confidence 899999754 34444332 10 1123455555554332221 12222222211 000 112
Q ss_pred CCCCCcceeecccCCCCCcccCCC-------------------------------C------Ch-HHHHHHHHHHHhCCC
Q 002611 773 GWWPSRAVTFIENHDTGSTQGHWR-------------------------------F------PG-GREMQGYAYILTHPG 814 (900)
Q Consensus 773 ~~~P~~~vnflenHDt~R~~s~~~-------------------------------~------~~-~~~klA~allltlPG 814 (900)
+..|.+.|||+..||.-.+..... + .+ ...+...+.+|+..|
T Consensus 455 ~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG 534 (697)
T COG1523 455 GRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQG 534 (697)
T ss_pred CCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcC
Confidence 345789999999999943221110 0 11 223445556667789
Q ss_pred eeeeeCCChh--------------------HH-------HHHHHHHHHHHHHhCcccccCCe
Q 002611 815 TPSVFYDHIF--------------------SH-------YRQEIEALLSVRKRNKIHCRSRV 849 (900)
Q Consensus 815 iP~IYyGdEf--------------------~W-------l~~~~k~Li~lRk~~paL~~G~~ 849 (900)
+||+-.|||+ +| ++++.+.||+|||+|++|+...+
T Consensus 535 ~pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 535 TPMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred CcccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 9999999995 25 89999999999999999987433
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=9e-34 Score=339.09 Aligned_cols=186 Identities=23% Similarity=0.306 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
||+|.+++++|+||++|||++|||+|||++. ++|||++.||+.|||.|||+++|++||++||++||+||||+|+||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999999999999999999999999975 78999999999999999999999999999999999999999999999
Q ss_pred cC---CCC-----CCCCCccCCCC--CCCCCCCc------c--C----------------C--C----CCCC--------
Q 002611 601 AH---YQN-----QNGVWNIFGGR--LNWDDRAV------V--A----------------D--D----PHFQ-------- 632 (900)
Q Consensus 601 ~d---~~~-----~~g~~~~y~g~--~~W~~~~~------~--~----------------~--~----~~f~-------- 632 (900)
.+ +++ .+|.-++|.++ .+|.+... + . + . .+|+
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 87 332 35666666554 35542100 0 0 0 0 0000
Q ss_pred ------------------------------------CCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeE
Q 002611 633 ------------------------------------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (900)
Q Consensus 633 ------------------------------------~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGf 676 (900)
+.-+|-.+....+|++++.++|+|.++...++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00122223355779999999999999999999999955559999
Q ss_pred Eecccccc--cchhHHHHHHhcCCc-eEEee-cccC
Q 002611 677 RLDFVRGF--WGGYVKDYLEATEPY-FAVGE-YWDS 708 (900)
Q Consensus 677 RlD~a~~l--~~~f~~~~~~~~~p~-~liGE-vw~~ 708 (900)
|+|.++++ |..|++++.++.+|. +++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 777999988888874 77778 5554
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=5.6e-35 Score=345.91 Aligned_cols=163 Identities=27% Similarity=0.488 Sum_probs=148.8
Q ss_pred cccccccceecccCCCCCCCCCCCC-CCCC--CCCCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCc
Q 002611 47 CSFKKLQKITVSSSTSTSTSPATST-DTTP--VRPGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGK 123 (900)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~ 123 (900)
..|+|+|||++|+|+++++.++.++ +.++ ..++.++|||++||.|++.|+|+|+|+|++|++++|++|+|+||+||+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~ 308 (894)
T PLN02784 229 GALGQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGD 308 (894)
T ss_pred CccccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCC
Confidence 5679999999999999999888765 4444 889999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhh
Q 002611 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (900)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (900)
||||||| ||+..+||++||++|+|+||+. |+|||||||++.++|.. ..+.|++|++++||+||||++ +|+|||
T Consensus 309 vvlHWgV--~k~~~~eW~~Pp~~~~P~~sv~-~~kA~eT~~~~~~~~~~---~~~~~~ld~~~~g~~FVLk~~-~g~W~~ 381 (894)
T PLN02784 309 VVVHWGV--CKDGAKTWEIPPEPHPPETSLF-KNKALQTMLQQKDDGNG---SSGLFSLDGELEGLLFVLKLN-EGTWLR 381 (894)
T ss_pred EEEEeEe--ccCCCCcccCCCCCCCCCccee-cccccccccccccCCCc---ceEEEecCCCeeEEEEEEECC-CCchhh
Confidence 9999999 9998899999999999999985 99999999999876633 445677899999999999998 668999
Q ss_pred cCCcceeEeCCcc
Q 002611 204 HRGRDFKVPLVDY 216 (900)
Q Consensus 204 ~~g~df~v~l~~~ 216 (900)
|+|+||||||+..
T Consensus 382 ~~G~DF~Ipl~~~ 394 (894)
T PLN02784 382 CNGNDFYVPLLTS 394 (894)
T ss_pred cCCccEEEeCCch
Confidence 9999999999974
No 35
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-33 Score=325.34 Aligned_cols=339 Identities=19% Similarity=0.175 Sum_probs=213.8
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHH
Q 002611 504 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (900)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (900)
..+.||+++-.|++| ..-|+++..+++|+|||+||||+|.||||.+.+ .+|||+++-||++.++|||+++||+||+
T Consensus 144 ~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD 221 (628)
T COG0296 144 PIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVD 221 (628)
T ss_pred CceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHH
Confidence 456799999999874 446899999999999999999999999999999 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHH
Q 002611 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (900)
Q Consensus 582 ~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~ 661 (900)
+||++||.||||+|+||.+.+... ...|++. .++....+ .. +.. .-++.--.|...++||+||+
T Consensus 222 ~aH~~GIgViLD~V~~HF~~d~~~----L~~fdg~-~~~e~~~~-----~~--~~~----~~Wg~~i~~~gr~EVR~Fll 285 (628)
T COG0296 222 AAHQAGIGVILDWVPNHFPPDGNY----LARFDGT-FLYEHEDP-----RR--GEH----TDWGTAIFNYGRNEVRNFLL 285 (628)
T ss_pred HHHHcCCEEEEEecCCcCCCCcch----hhhcCCc-cccccCCc-----cc--ccC----CCcccchhccCcHHHHHHHH
Confidence 999999999999999999986531 0112221 11110000 00 000 00122234556999999999
Q ss_pred HHHHHHHHHhCCCeEEecccccccc------------------------hhHHHHHHhc---CCc-eEEeecccCCCccc
Q 002611 662 EWLCWLRNEIGYDGWRLDFVRGFWG------------------------GYVKDYLEAT---EPY-FAVGEYWDSLSYTY 713 (900)
Q Consensus 662 ~vl~~W~~e~GIDGfRlD~a~~l~~------------------------~f~~~~~~~~---~p~-~liGEvw~~~~~l~ 713 (900)
+.+.+|+++|+|||+|+||+..+.. +|++...+.+ .|. +.|+|-|.+.+...
T Consensus 286 ~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t 365 (628)
T COG0296 286 ANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVT 365 (628)
T ss_pred HHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCce
Confidence 9999999999999999999975432 1222222222 344 68999998743210
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhh-HHHHHhhhchhhhhhhhhcCCCCCCcC--CCCCcceeecccCCCC-
Q 002611 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK-GILHSALDRCEYWRLSDEKGKPPGVVG--WWPSRAVTFIENHDTG- 789 (900)
Q Consensus 714 g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~-~~l~~~l~~~~~~~l~~~~~~~~~~~~--~~P~~~vnflenHDt~- 789 (900)
- ...+ +|+ .|+|... ..+++.+.-.................. ..++..+.++-|||.-
T Consensus 366 ~-------------~~~~---gG~--gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~y~~se~~~l~~sHDevv 427 (628)
T COG0296 366 L-------------PVAI---GGL--GFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLLYAFSENVVLPLSHDEVV 427 (628)
T ss_pred e-------------eecc---ccc--chhhhhhhhhHhhHHHhcccCccccccccCCCccccccccceeEecccccccee
Confidence 0 0000 000 1221111 112222110000000000000000011 1235678999999985
Q ss_pred ---Cc-ccCCC----CChHHHHHHHHHHHhCCCeeeeeCCChhH------------H--------------HHHHHHHHH
Q 002611 790 ---ST-QGHWR----FPGGREMQGYAYILTHPGTPSVFYDHIFS------------H--------------YRQEIEALL 835 (900)
Q Consensus 790 ---R~-~s~~~----~~~~~~klA~allltlPGiP~IYyGdEf~------------W--------------l~~~~k~Li 835 (900)
|. ...+. ...+.++.++++|++.||+|++|+|+||+ | +..+.+.|.
T Consensus 428 hGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln 507 (628)
T COG0296 428 HGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLN 507 (628)
T ss_pred ecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhH
Confidence 21 11111 13467899999999999999999999984 3 233333333
Q ss_pred HHHHhCcccc-----cCCeeEEeecC---CEEEEEE-----CCEEEEEEeCCCCCC
Q 002611 836 SVRKRNKIHC-----RSRVEIVKAER---DVYAAII-----DEKVAMKLGPGHYEP 878 (900)
Q Consensus 836 ~lRk~~paL~-----~G~~~~l~~~~---~v~a~~r-----~~~vlVviNn~~~~~ 878 (900)
++-+..+++. ...+.++..++ ++++|.| .++.+|++||....+
T Consensus 508 ~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~ 563 (628)
T COG0296 508 ALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVP 563 (628)
T ss_pred HhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCc
Confidence 3444545443 34566666543 5777776 456788888876655
No 36
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.96 E-value=1e-27 Score=288.23 Aligned_cols=98 Identities=22% Similarity=0.353 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
+++|++++++|+||++||||+|||+||+++. ++|||++.||+.|||.||++++|++||++||++||+||||+|+||++
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999985 88999999999999999999999999999999999999999999999
Q ss_pred cCCC---C-----CCCCCccCCCCC--CCC
Q 002611 601 AHYQ---N-----QNGVWNIFGGRL--NWD 620 (900)
Q Consensus 601 ~d~~---~-----~~g~~~~y~g~~--~W~ 620 (900)
.+++ + .+|.-++|.+++ +|.
T Consensus 96 ~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~ 125 (879)
T PRK14511 96 VGGPDNPWWWDVLEWGRSSPYADFFDIDWD 125 (879)
T ss_pred CcCccCHHHHHHHHhCCCCCccCceeeeec
Confidence 8763 1 345556665543 453
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.3e-29 Score=285.38 Aligned_cols=164 Identities=29% Similarity=0.471 Sum_probs=128.8
Q ss_pred CCCCceeeeecccccCC---CCCCCHHHHHHH-HHHHHHcCCCEEEeCCCCCCC---CCCCCCCccCCCcCCCCCCHH--
Q 002611 504 TGTGFEILCQGFNWESH---KSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNID-- 574 (900)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~---~~GG~l~GI~~k-LdYLk~LGVt~I~L~PIfes~---s~hGYd~~Dy~~IDp~lGt~e-- 574 (900)
+-..|+.++++|.=+-+ ..|| ++|.++| |++||+||+|||+|||||++. ..+||.|++|+++-.+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 34679999999973211 1346 9999999 999999999999999999994 579999999999999999999
Q ss_pred ----HHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCC-CC-CCCCCCCCCCCCCC
Q 002611 575 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GR-GNKSSGDNFHAAPN 648 (900)
Q Consensus 575 ----dfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~-~~-~~~~~~~~~~~lpd 648 (900)
|||.||++||..||-|+||+|+||++.+.. +..+-|+|. . +..+|+ ++ +..+ .++..-
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGi--------d-~~~Yf~~~~r~~h~----~~~~r~ 371 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGI--------D-NSVYFHSGPRGYHN----SWCSRL 371 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCc--------C-CceEEEeCCccccc----cccccc
Confidence 999999999999999999999999998432 222224331 0 000111 11 1111 223445
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 649 IDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 649 LN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
+|++.++|+++|++.++||+.||+|||||||.+..+
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 899999999999999999999999999999998644
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.95 E-value=3.8e-27 Score=275.91 Aligned_cols=280 Identities=18% Similarity=0.190 Sum_probs=173.6
Q ss_pred CccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCC--CCCC
Q 002611 560 PRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNK 637 (900)
Q Consensus 560 ~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~--~~~~ 637 (900)
+++||+++++|||++|||+||++||++||+||||+|+||++.+... |. ..|.|... .+|.. .+..
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--GL-~~fDGt~~----------~Yf~~~~~g~~ 493 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSND----------CYFHTGKRGHH 493 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcccc--ch-hhcCCCcc----------ceeccCCCCcc
Confidence 6789999999999999999999999999999999999999976421 11 11222110 01111 1111
Q ss_pred CCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEeccccccc-------------------------chhHH--
Q 002611 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVK-- 690 (900)
Q Consensus 638 ~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~-------------------------~~f~~-- 690 (900)
..| +...+|+.+++|+++|++.++||+++|||||||+|++..+- -.|++
T Consensus 494 -~~W---Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~la 569 (872)
T PLN03244 494 -KHW---GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILA 569 (872)
T ss_pred -CCC---CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHH
Confidence 112 33568999999999999999999999999999999883111 01333
Q ss_pred -HHHHhcCCc-eEEeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhH----HHHHhhhchh--hhhhh
Q 002611 691 -DYLEATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKG----ILHSALDRCE--YWRLS 762 (900)
Q Consensus 691 -~~~~~~~p~-~liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~----~l~~~l~~~~--~~~l~ 762 (900)
+.+.+..|. ++|+|-..+-+.+..- . ..+|+ .|||.+.+ ...+.+.... -|++.
T Consensus 570 N~~ih~~~P~~itIAEDsS~~P~vt~P---------------v-~~GGL--GFDYKWnMgwmdd~lkylk~~pderw~~~ 631 (872)
T PLN03244 570 NEILHALHPKIITIAEDATYYPGLCEP---------------T-SQGGL--GFDYYVNLSAPDMWLDFLDNIPDHEWSMS 631 (872)
T ss_pred HHHHHHhCCCeEEEEEcCCCCcCcccc---------------C-CCCCC--CccceecCcchHHHHHHHHhCCCcccCHH
Confidence 234455788 7999976542211100 0 01111 23332211 1111111110 02211
Q ss_pred hhcCCCCCCcCCCCCcceeecccCCCC----CcccC-C---------CC------ChHHHHHHHHHHHhCCCee-eeeCC
Q 002611 763 DEKGKPPGVVGWWPSRAVTFIENHDTG----STQGH-W---------RF------PGGREMQGYAYILTHPGTP-SVFYD 821 (900)
Q Consensus 763 ~~~~~~~~~~~~~P~~~vnflenHDt~----R~~s~-~---------~~------~~~~~klA~allltlPGiP-~IYyG 821 (900)
...... ....++...++.|.||||.+ +.... + .. ....-||+.++++++||.+ ++|+|
T Consensus 632 ~ItfsL-~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMG 710 (872)
T PLN03244 632 KIVSTL-IANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMG 710 (872)
T ss_pred HHhhhh-hcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecc
Confidence 111000 01122345789999999993 21111 1 00 1123466777889999988 79999
Q ss_pred ChhH----------------------H----------HHHHHHHHHHHHHhCcccccCCeeEEe--ecCCEEEEEECCEE
Q 002611 822 HIFS----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKV 867 (900)
Q Consensus 822 dEf~----------------------W----------l~~~~k~Li~lRk~~paL~~G~~~~l~--~~~~v~a~~r~~~v 867 (900)
.||+ | |.++++.|++|++++++|..|...+.. .++.|+||.|. .+
T Consensus 711 NEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~L 789 (872)
T PLN03244 711 NEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PF 789 (872)
T ss_pred cccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CE
Confidence 9863 4 788999999999999999876544433 34589999997 47
Q ss_pred EEEEeCCCC
Q 002611 868 AMKLGPGHY 876 (900)
Q Consensus 868 lVviNn~~~ 876 (900)
|+|+|....
T Consensus 790 LfVfNF~P~ 798 (872)
T PLN03244 790 LFIFNFHPS 798 (872)
T ss_pred EEEEeCCCC
Confidence 777776543
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.7e-26 Score=240.26 Aligned_cols=334 Identities=24% Similarity=0.402 Sum_probs=235.8
Q ss_pred CCceeeeecccccCCCCCCCHHHH-HHHHHHHHHcCCCEEEeCCCCCCC--------CCCCCCCccCCCcCCCCCCHHHH
Q 002611 506 TGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------SPEGYMPRDLYNLSSRYGNIDEL 576 (900)
Q Consensus 506 ~~y~i~~~~F~Wd~~~~GG~l~GI-~~kLdYLk~LGVt~I~L~PIfes~--------s~hGYd~~Dy~~IDp~lGt~edf 576 (900)
.+...+++.|.|. +..| .++-..|+--|+.+|+++|+.|.. ...+|+|.. |+++.+-|.++||
T Consensus 26 ~~R~tmVHLFEWK-------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF 97 (504)
T KOG2212|consen 26 QGRTTIVHLFEWK-------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEF 97 (504)
T ss_pred cCcceEEEEEEee-------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHH
Confidence 3446788889985 3444 455568899999999999999976 124799997 5999999999999
Q ss_pred HHHHHHHHHcCCEEEEEeccCccccCCC-----CCCCCCc-----cCCCCCCCCCCCccCCCCCCCC------C------
Q 002611 577 KDVVNKFHDVGMKILGDVVLNHRCAHYQ-----NQNGVWN-----IFGGRLNWDDRAVVADDPHFQG------R------ 634 (900)
Q Consensus 577 k~LV~~AH~~GIrVILD~V~NHt~~d~~-----~~~g~~~-----~y~g~~~W~~~~~~~~~~~f~~------~------ 634 (900)
+.||.+|.+.|+||++|+|+||++.... ...|.+. .|.| +++...+|+. .
T Consensus 98 ~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPG--------VPYs~~DFn~~kc~~~~~~i~~~ 169 (504)
T KOG2212|consen 98 RDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPG--------VPYSGWDFNDGKCKTGSGDIENY 169 (504)
T ss_pred HHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCC--------CCcccccCCCcccCCCccccccc
Confidence 9999999999999999999999986321 1122211 1333 1111112221 0
Q ss_pred --CCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHHhcC----------Cc-eE
Q 002611 635 --GNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATE----------PY-FA 701 (900)
Q Consensus 635 --~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~~~~----------p~-~l 701 (900)
......|..-+|-|||..+..||..|++.|.+++ +.||.|||.|+++|+|++-+..++..++ .. |+
T Consensus 170 Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi 248 (504)
T KOG2212|consen 170 NDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFI 248 (504)
T ss_pred cchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCcee
Confidence 1112345668899999999999999999999999 9999999999999999998888766541 11 67
Q ss_pred EeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC-cce
Q 002611 702 VGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS-RAV 780 (900)
Q Consensus 702 iGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~-~~v 780 (900)
+-|+.+...-.... -+|+ ..|....| .+...+..++.+.+.+.+...++.. ++.-|+ +++
T Consensus 249 ~qEVID~GgE~v~~------------~dY~--g~G~~TeF--~f~~~ig~~~r~~~~~kyL~nwG~~---wGf~~s~~~L 309 (504)
T KOG2212|consen 249 YQEVIDLGGEPIKS------------SDYF--GNGRVTEF--KFGAKLGTVIRKWNKMKYLKNWGEG---WGFMPSDRAL 309 (504)
T ss_pred hhhhhhcCCceeec------------cccc--CCceeeee--echHHHHHHHhcchhHHHHHhcCCc---cCcCCCcceE
Confidence 77776642100000 0122 12233344 4445677777777767766666533 333343 789
Q ss_pred eecccCCCCCcccC-----CC-CChHHHHHHHHHHHhCC-CeeeeeCCChh----------------------------H
Q 002611 781 TFIENHDTGSTQGH-----WR-FPGGREMQGYAYILTHP-GTPSVFYDHIF----------------------------S 825 (900)
Q Consensus 781 nflenHDt~R~~s~-----~~-~~~~~~klA~allltlP-GiP~IYyGdEf----------------------------~ 825 (900)
+|++|||+.|-... +. ...++++||.+++|+.| |+|-+....-| +
T Consensus 310 ~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~G 389 (504)
T KOG2212|consen 310 VFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNG 389 (504)
T ss_pred EEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCc
Confidence 99999999996553 11 14688999999999999 99998876432 4
Q ss_pred H----HHHHHHHHHHHHHhCcccccCCee-EEeecCCEEEEEECCEEEEEEeCCCCCC
Q 002611 826 H----YRQEIEALLSVRKRNKIHCRSRVE-IVKAERDVYAAIIDEKVAMKLGPGHYEP 878 (900)
Q Consensus 826 W----l~~~~k~Li~lRk~~paL~~G~~~-~l~~~~~v~a~~r~~~vlVviNn~~~~~ 878 (900)
| -...|++|..+|+.- ..-.+. +.....+.++|.|+++-.+++||..+..
T Consensus 390 WvCEHRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~ 444 (504)
T KOG2212|consen 390 WVCEHRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDF 444 (504)
T ss_pred eeeechHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhH
Confidence 6 677899999999873 222333 3334457899999999999999986553
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=99.90 E-value=4.9e-24 Score=215.07 Aligned_cols=93 Identities=32% Similarity=0.523 Sum_probs=88.1
Q ss_pred eeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CCCCCCCccCCCcCCCCCCHHHHHHHHHHHH
Q 002611 509 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 584 (900)
Q Consensus 509 ~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH 584 (900)
+++++.|.|.....+|||+||+++|+||++||||+|||+||+++. ++|||++.||+++||+|||+++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 367888998777778999999999999999999999999999999 7899999999999999999999999999999
Q ss_pred HcCCEEEEEeccCcccc
Q 002611 585 DVGMKILGDVVLNHRCA 601 (900)
Q Consensus 585 ~~GIrVILD~V~NHt~~ 601 (900)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999984
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.79 E-value=1.1e-18 Score=222.08 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
.+++|++++++|+||++||||+|||+|||++. ++|||++.||+.|||.|||+++|++||++||++||+||||+|+||+
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 36899999999999999999999999999974 8899999999999999999999999999999999999999999999
Q ss_pred cc
Q 002611 600 CA 601 (900)
Q Consensus 600 ~~ 601 (900)
+.
T Consensus 833 ~~ 834 (1693)
T PRK14507 833 GV 834 (1693)
T ss_pred CC
Confidence 95
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=5.6e-17 Score=187.45 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
+|....+.||||++|||.++|++|||.+. |.||||++|+..|||.+|+.+.|.+|++++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 59999999999999999999999999998 8999999999999999999999999999999999999999999999987
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.48 E-value=4.2e-14 Score=175.52 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEEecc
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVL 596 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lG----t~edfk~LV~~AH~~-GIrVILD~V~ 596 (900)
-|.|....++|+||++||+|+|||+||++.+ ++|.|++.||+.|||.|| +.+||++||+++|++ ||++|+|+|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 5999999999999999999999999999555 999999999999999994 899999999999997 9999999999
Q ss_pred CccccCCCC
Q 002611 597 NHRCAHYQN 605 (900)
Q Consensus 597 NHt~~d~~~ 605 (900)
|||+.+|+|
T Consensus 208 NHTa~ds~W 216 (1464)
T TIGR01531 208 NHTANNSPW 216 (1464)
T ss_pred cccccCCHH
Confidence 999999863
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.89 E-value=3.2e-08 Score=114.16 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHH---------------cCCCEEEeCCCCCCC---------------------------------
Q 002611 522 SGRWYMELKEKATELSS---------------LGFSVIWLPPPTESV--------------------------------- 553 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~---------------LGVt~I~L~PIfes~--------------------------------- 553 (900)
-+|+|.|+++--..|.+ .|+++|+|+||=+..
T Consensus 191 p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~ 270 (811)
T PF14872_consen 191 PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHED 270 (811)
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccC
Confidence 36999999888777743 699999999985422
Q ss_pred ------------CCCCCCCc--cCCCcCCC-CCC--HHHHHHHHHHHHH---cCCEEEEEeccCccccCCCC-CCCCCcc
Q 002611 554 ------------SPEGYMPR--DLYNLSSR-YGN--IDELKDVVNKFHD---VGMKILGDVVLNHRCAHYQN-QNGVWNI 612 (900)
Q Consensus 554 ------------s~hGYd~~--Dy~~IDp~-lGt--~edfk~LV~~AH~---~GIrVILD~V~NHt~~d~~~-~~g~~~~ 612 (900)
.|||||+. -.-+.+|. ++| ++||-.||+.+|. ..|+||+|+|+.|.-.++.. -++.|
T Consensus 271 ~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~~f-- 348 (811)
T PF14872_consen 271 GDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLNRRF-- 348 (811)
T ss_pred ceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhhhhh--
Confidence 35778753 33455554 344 6899999999997 57999999999998655431 12221
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 613 FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 613 y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
+ .++.=| .-|+|+.+|.||.-+.+.-+.=+ ++|+||+|+|.+..|
T Consensus 349 l------------------kGPnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 349 L------------------KGPNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred c------------------cCCccc--------cccccccChHHHHHHHHHHHhhc-ccCCceeEecccccc
Confidence 1 111111 23699999999999998877777 999999999999743
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.67 E-value=4e-08 Score=111.60 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCH------HHHHHHHHHHH-HcCCEEEEEe
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDV 594 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~------edfk~LV~~AH-~~GIrVILD~ 594 (900)
-|.+....++|.+++++|+|.|+++|+.+-+ |+..|.+.|...+||.|... ++++++|.+++ +.||..|.|+
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 4899999999999999999999999999988 78899999999999998653 69999999995 7999999999
Q ss_pred ccCccccCCCCC
Q 002611 595 VLNHRCAHYQNQ 606 (900)
Q Consensus 595 V~NHt~~d~~~~ 606 (900)
|+|||+.+++|-
T Consensus 98 V~NHtA~nS~Wl 109 (423)
T PF14701_consen 98 VLNHTANNSPWL 109 (423)
T ss_pred eeccCcCCChHH
Confidence 999999998763
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.56 E-value=1e-06 Score=103.01 Aligned_cols=202 Identities=21% Similarity=0.327 Sum_probs=120.0
Q ss_pred CCCCCCcCCCChHHHHHHHHHHHHHHH---------HhCCCeEEecccccccchhHHH---HHHhc----------CCce
Q 002611 643 FHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKD---YLEAT----------EPYF 700 (900)
Q Consensus 643 ~~~lpdLN~~np~Vr~~i~~vl~~W~~---------e~GIDGfRlD~a~~l~~~f~~~---~~~~~----------~p~~ 700 (900)
+--.-|+|-+||.|+.+.+.|+.|+|. +..+||+|+|+++.+..+.++. +.++. ...+
T Consensus 140 fLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 140 FLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp --SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC-
T ss_pred eEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhhh
Confidence 344568999999999999999999994 4569999999999999988764 33332 2347
Q ss_pred EEeecccCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchh-----hhhhhhhcCCCC--CCcC
Q 002611 701 AVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE-----YWRLSDEKGKPP--GVVG 773 (900)
Q Consensus 701 liGEvw~~~~~l~g~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~-----~~~l~~~~~~~~--~~~~ 773 (900)
-|-|.|.... ..|+...++....+|..++..|...|.... +..+........ ...+
T Consensus 220 SilE~ws~nd-----------------~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e 282 (809)
T PF02324_consen 220 SILEAWSSND-----------------PDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE 282 (809)
T ss_dssp -EESSSTTTH-----------------HHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S
T ss_pred eeeeccccCC-----------------hHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC
Confidence 7889998631 145666666777888888877777665431 222222110000 0001
Q ss_pred CCCCcceeecccCCCCC-----------cc---cCCCC-----------------------ChHHHHHHHHHHHhCC-Ce
Q 002611 774 WWPSRAVTFIENHDTGS-----------TQ---GHWRF-----------------------PGGREMQGYAYILTHP-GT 815 (900)
Q Consensus 774 ~~P~~~vnflenHDt~R-----------~~---s~~~~-----------------------~~~~~klA~allltlP-Gi 815 (900)
.-+.....|+.+||.+- +. .-+.+ ....+..++|+|||-. .|
T Consensus 283 n~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTV 362 (809)
T PF02324_consen 283 NEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTV 362 (809)
T ss_dssp SESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSE
T ss_pred CcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCC
Confidence 11223467999999951 00 00000 1233578999999965 99
Q ss_pred eeeeCCChhH----H------HHHHHHHHHHHHHhCcccccCCee-E--Eee-cCCEEEEEE
Q 002611 816 PSVFYDHIFS----H------YRQEIEALLSVRKRNKIHCRSRVE-I--VKA-ERDVYAAII 863 (900)
Q Consensus 816 P~IYyGdEf~----W------l~~~~k~Li~lRk~~paL~~G~~~-~--l~~-~~~v~a~~r 863 (900)
|.|||||-|. . .++.|..|++-|.++-+. |.-. . +.. ..+++.-.|
T Consensus 363 PRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYvaG--GQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 363 PRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVAG--GQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp EEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--S---EEEEE--EEETTTSEEEEEE
T ss_pred ceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhcC--CceeeeecccCCCCceEEEEe
Confidence 9999999762 1 789999999999998542 2111 1 222 346876655
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.01 E-value=3e-05 Score=86.43 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lG--t~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
+-+.+.+.|+.|+++|+|+|++-=-.... ....+.|...+......+ +-|=|+.+|++||++||+|..=+.++..+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 56789999999999999999985332211 111122211111111111 25679999999999999998766444332
Q ss_pred cCCC-CCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEec
Q 002611 601 AHYQ-NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (900)
Q Consensus 601 ~d~~-~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD 679 (900)
.... ..... ..|...........+. ....+..=||..+|+||++|+++++..++.|.|||+-||
T Consensus 97 ~~~~~~~~~~-------p~~~~~~~~~~~~~~~--------~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 97 PDVSHILKKH-------PEWFAVNHPGWVRTYE--------DANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred CchhhhhhcC-------chhheecCCCceeecc--------cCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 2100 00000 1111000000000000 001122248999999999999999999999999999999
Q ss_pred c
Q 002611 680 F 680 (900)
Q Consensus 680 ~ 680 (900)
-
T Consensus 162 d 162 (311)
T PF02638_consen 162 D 162 (311)
T ss_pred c
Confidence 3
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.69 E-value=0.0003 Score=68.73 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC--c-cccCCC
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN--H-RCAHYQ 604 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N--H-t~~d~~ 604 (900)
.+-+++||++|+|+|.+.- .+-|| |-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ . ++..|
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H- 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH- 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC-
Confidence 4567899999999998743 11133 44555677789998 7889999999999999999876665 1 11122
Q ss_pred CCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecc
Q 002611 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (900)
Q Consensus 605 ~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~ 680 (900)
++|.-....+. +... ......++ ....+| ..++++++..++..++.|.+||+=+|.
T Consensus 77 ------------PeW~~~~~~G~-~~~~---~~~~~~~~-~~~c~n---s~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 ------------PEWFVRDADGR-PMRG---ERFGYPGW-YTCCLN---SPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ------------CceeeECCCCC-CcCC---CCcCCCCc-eecCCC---ccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 23321110000 0000 00000111 112233 356699999999999889999998884
No 49
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.56 E-value=0.00011 Score=86.56 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC---------CCCCCCCccCCCcC----CCCCCHHHHHHHHHHHHHcCCEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESV---------SPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKIL 591 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~---------s~hGYd~~Dy~~ID----p~lGt~edfk~LV~~AH~~GIrVI 591 (900)
+-.-|.+..+-+|++|||..+|.|-+.+. -..||+-+|-|.+- ..||+.+||+..|+++|+.||+||
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 35678888999999999999999999876 24889999988885 789999999999999999999999
Q ss_pred EEeccCcccc
Q 002611 592 GDVVLNHRCA 601 (900)
Q Consensus 592 LD~V~NHt~~ 601 (900)
-|.|++.+-.
T Consensus 665 aDwVpdQiYn 674 (809)
T PF02324_consen 665 ADWVPDQIYN 674 (809)
T ss_dssp EEE-TSEE--
T ss_pred hhhchHhhhC
Confidence 9999998753
No 50
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.53 E-value=0.00023 Score=59.27 Aligned_cols=56 Identities=57% Similarity=1.114 Sum_probs=44.4
Q ss_pred cccccCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEEc
Q 002611 842 KIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 899 (900)
Q Consensus 842 paL~~G~~~~l~~~~~v~a~~r~~~vlVviNn~~~~~~~g~~~~~~~~~g~~~~vw~~ 899 (900)
...++..++++.++.++|+...+++++|-|++.+..| ++ .+|.+++.|.+|.||++
T Consensus 4 gI~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P-~~-~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 4 GIHCRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSP-SG-SGWKLAASGDDYAVWEK 59 (59)
T ss_dssp T--TT--EEEEEEETTEEEEEETTTEEEEESS-GGS-----TTEEEEEEETTEEEEEE
T ss_pred ccCCCCceEEEEecCCcEEEEECCeEEEEECCCcccc-CC-CCcEEEeECCcEEEEeC
Confidence 3456778999999999999999999999999998888 44 46999999999999986
No 51
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.28 E-value=0.013 Score=69.51 Aligned_cols=46 Identities=15% Similarity=0.014 Sum_probs=34.7
Q ss_pred CC-CCHH-HHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcC
Q 002611 522 SG-RWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLS 567 (900)
Q Consensus 522 ~G-G~l~-GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~ID 567 (900)
.| |||. ++.+-++.+++.|++.|+|+|+.... .+..|.+.+-+.+|
T Consensus 20 ~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 20 YGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 35 9995 99999999999999999999999865 22345554433333
No 52
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.22 E-value=0.0016 Score=54.74 Aligned_cols=59 Identities=44% Similarity=0.708 Sum_probs=47.4
Q ss_pred CcccccCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEEc
Q 002611 841 NKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 899 (900)
Q Consensus 841 ~paL~~G~~~~l~~~~~v~a~~r~~~vlVviNn~~~~~~~g~~~~~~~~~g~~~~vw~~ 899 (900)
+....+..++++.++.++|+...+++++|-|++........+.+|.++++|.+|.||++
T Consensus 3 ~gI~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 3 NGIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred cccCCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 34456788999999999999999999999999963332222345999999999999986
No 53
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.00042 Score=83.16 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCC------CHHHHHHHHHHHHHc-CCEEEEEec
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHDV-GMKILGDVV 595 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lG------t~edfk~LV~~AH~~-GIrVILD~V 595 (900)
|.|.....+|.-+|+-|+|.|.++||.+-+ |+.-|...|-..+++.+- +.+|.++||+.+|+- ||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 788889999999999999999999999988 888999999999999987 789999999999874 999999999
Q ss_pred cCccccCCC
Q 002611 596 LNHRCAHYQ 604 (900)
Q Consensus 596 ~NHt~~d~~ 604 (900)
+|||+..+.
T Consensus 219 ~NHtAnns~ 227 (1521)
T KOG3625|consen 219 YNHTANNSK 227 (1521)
T ss_pred hhccccCCc
Confidence 999999754
No 54
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0033 Score=71.98 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCc-cCC-CcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPR-DLY-NLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~-Dy~-~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
.+=..+.+.|+.|+.||||+||..=.-... ....+.+. ++. -+-..-++-|=|..+|++||++||+|+-=+-+--+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhccc
Confidence 456679999999999999999964332221 00111111 000 00001223456899999999999999865555444
Q ss_pred ccCCCCCCCCCccCCCC-CCCCCCCccCCCCCCCCCCC-CCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEE
Q 002611 600 CAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGN-KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (900)
Q Consensus 600 ~~d~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f~~~~~-~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfR 677 (900)
+..... +... ..|..... .+. +....++....=||-..|+||++|.+.+...++.|.|||.-
T Consensus 141 a~~~s~-------~~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQ 204 (418)
T COG1649 141 APPTSP-------LTKRHPHWLTTKR---------PGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQ 204 (418)
T ss_pred CCCCCh-------hHhhCCCCcccCC---------CCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCcee
Confidence 432210 0000 11111000 000 00000110233488899999999999999999999999999
Q ss_pred eccc
Q 002611 678 LDFV 681 (900)
Q Consensus 678 lD~a 681 (900)
||--
T Consensus 205 fDd~ 208 (418)
T COG1649 205 FDDY 208 (418)
T ss_pred ccee
Confidence 9964
No 55
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=96.90 E-value=0.0015 Score=58.87 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCcccccCCeeEEee----cCCEEEEEE--C-CEEEEEEeCCCC
Q 002611 830 EIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII--D-EKVAMKLGPGHY 876 (900)
Q Consensus 830 ~~k~Li~lRk~~paL~~G~~~~l~~----~~~v~a~~r--~-~~vlVviNn~~~ 876 (900)
+||+||+|||+||+|+.|....+.. ++.++++.| + +.++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 6999999999999999998877763 456677777 3 567777776653
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.57 E-value=0.02 Score=63.83 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
-+-+.|.+.++.++++|| ++|+|=-=+... . .| +..|+ +|- +.++||+++|++|||+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 467788999999999994 677764322111 1 12 34443 565 4899999999999999998877 444
Q ss_pred cCCCCCC-CCCccCCCCCCCCCCCccCCCCCCCCCC-CCCCCCCC-CCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEE
Q 002611 601 AHYQNQN-GVWNIFGGRLNWDDRAVVADDPHFQGRG-NKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (900)
Q Consensus 601 ~d~~~~~-g~~~~y~g~~~W~~~~~~~~~~~f~~~~-~~~~~~~~-~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfR 677 (900)
.++.... +.. ..+. +. ...+ .......+ ....-+|+.||++++.+.+.++.++.+.|||||-
T Consensus 96 ~~s~~~~e~~~------~g~~---vk------~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w 160 (303)
T cd06592 96 TDSENFREAVE------KGYL---VS------EPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFK 160 (303)
T ss_pred CCCHHHHhhhh------CCeE---EE------CCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4332110 000 0000 00 0000 00000001 1123478999999999999999999899999999
Q ss_pred eccccc
Q 002611 678 LDFVRG 683 (900)
Q Consensus 678 lD~a~~ 683 (900)
+|+...
T Consensus 161 ~D~~E~ 166 (303)
T cd06592 161 FDAGEA 166 (303)
T ss_pred eCCCCc
Confidence 998764
No 57
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.50 E-value=0.015 Score=65.89 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCC-----CCCCCCc------cC--CCcC--CCCCCHHHHHHHHHHHHHcC
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMPR------DL--YNLS--SRYGNIDELKDVVNKFHDVG 587 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s-----~hGYd~~------Dy--~~ID--p~lGt~edfk~LV~~AH~~G 587 (900)
+-+.+.+-++.+++.|| ++|+|=+-+.... +..|... .| +..| .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 57788999999999886 7888864221110 1112110 00 1111 1222 6899999999999
Q ss_pred CEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCC--CCCCCC-C-CCCCCCCCCCcCCCChHHHHHHHHH
Q 002611 588 MKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNK-S-SGDNFHAAPNIDHSQDFVRKDIKEW 663 (900)
Q Consensus 588 IrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f--~~~~~~-~-~~~~~~~lpdLN~~np~Vr~~i~~v 663 (900)
+||++=+.+. +..+.......+..|.. ....+ .| ...+.. . ..+......-+|+.||++++...+.
T Consensus 99 ~kv~l~v~P~-i~~~~~~~~~~~~~~~~-------~~~~g--~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~ 168 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPHGQADNDEDY-------AVAQN--YLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEK 168 (340)
T ss_pred CEEEEEecCc-cccccccccccchhHHH-------HHHCC--EEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHH
Confidence 9999854442 21111000000000100 00000 00 001110 0 0011112234789999999999999
Q ss_pred HHHHHHHhCCCeEEecccccc
Q 002611 664 LCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 664 l~~W~~e~GIDGfRlD~a~~l 684 (900)
++.+++++|||||.+|+....
T Consensus 169 ~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 169 RRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHhcCCcEEEecCCCcc
Confidence 999997899999999988543
No 58
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.44 E-value=0.026 Score=62.91 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LG--Vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+-+.+.+.++.+++.| +++|+|=.=+.. +|.-.| +..|+ +|.+ .++||+++|++||+|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46778889999999999 667887553321 222123 45553 6654 689999999999999999875 555
Q ss_pred cCCCCC-CCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEec
Q 002611 601 AHYQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (900)
Q Consensus 601 ~d~~~~-~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD 679 (900)
.+++.. .+.- ..|.-. ..+...+. ...|. ....-+|+.||++++++.+.++.++ +.|||||-+|
T Consensus 92 ~~~~~~~e~~~------~g~~v~--~~~g~~~~----~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D 156 (308)
T cd06593 92 QKSPLFKEAAE------KGYLVK--KPDGSVWQ----WDLWQ--PGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTD 156 (308)
T ss_pred CCchhHHHHHH------CCeEEE--CCCCCeee----ecccC--CCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecC
Confidence 444310 0000 001000 00000000 00111 1223478999999999999999988 7999999999
Q ss_pred ccccccch
Q 002611 680 FVRGFWGG 687 (900)
Q Consensus 680 ~a~~l~~~ 687 (900)
....+|.+
T Consensus 157 ~~e~~p~~ 164 (308)
T cd06593 157 FGERIPTD 164 (308)
T ss_pred CCCCCCcc
Confidence 98766544
No 59
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=95.88 E-value=0.11 Score=59.89 Aligned_cols=138 Identities=19% Similarity=0.132 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC-CCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 525 WYMELKEKATELSSLGFSVIWLP-PPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~-PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
+-+.|.+.++.++++|++.+.|= -.|.......-...|. .+|+ +|- +.|+.|++.+|++||+.=|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 45668888899999999988772 2222111110112333 3443 553 35999999999999999888877766666
Q ss_pred CCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccc
Q 002611 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (900)
Q Consensus 603 ~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~ 682 (900)
+...... .+|--.. .+.. ... ....--||..+|+|++++.+.+..++++.|||.+.+|.-.
T Consensus 133 S~l~~~h-------Pdw~l~~--~~~~-------~~~---~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~ 193 (394)
T PF02065_consen 133 SDLYREH-------PDWVLRD--PGRP-------PTL---GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNR 193 (394)
T ss_dssp SCHCCSS-------BGGBTCC--TTSE--------EC---BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS
T ss_pred hHHHHhC-------ccceeec--CCCC-------CcC---cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 5432221 2332100 0000 000 0112248999999999999999988889999999999975
Q ss_pred cc
Q 002611 683 GF 684 (900)
Q Consensus 683 ~l 684 (900)
.+
T Consensus 194 ~~ 195 (394)
T PF02065_consen 194 DI 195 (394)
T ss_dssp -T
T ss_pred CC
Confidence 43
No 60
>PLN02635 disproportionating enzyme
Probab=95.56 E-value=0.099 Score=62.45 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+++++-+.||++||+||.|+.+-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~ 247 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIY 247 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecc
Confidence 478999999999999999999963
No 61
>PLN02316 synthase/transferase
Probab=95.53 E-value=0.22 Score=63.65 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=60.1
Q ss_pred CCeEEEEEEecCCCCceEEEEEecC-----CCceEEEeeeeecCCCCCCccCCCCCCCCCCccccccccccccccccc-C
Q 002611 96 EGKMFVRLQKGKDEKNWQLSVGCNI-----PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLA-E 169 (900)
Q Consensus 96 ~~~~~v~v~~~~~~~~~~v~~~t~~-----~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~-~ 169 (900)
++.+.|.=..-+.+...+|.+-.+. ..++++|=|. ..|...+ .-+.+.++. .
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-------N~W~~~~---------------f~~~~~k~~~~ 197 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-------NGWRWKS---------------FTERLEKTELG 197 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-------ccccccc---------------cceeccccccC
Confidence 4444444444455566777766554 4458899777 6776632 112233333 3
Q ss_pred CCceeEEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCccc
Q 002611 170 GDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYL 217 (900)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~ 217 (900)
|+- -..++.++ +....|.||+.++++ .|=||+|.||+++++...
T Consensus 198 g~w-w~~~v~Vp--~~A~~ldfVf~~g~~-~yDNN~~~Df~~~V~~~~ 241 (1036)
T PLN02316 198 GDW-WSCKLHIP--KEAYKMDFVFFNGQN-VYDNNDHKDFCVEIEGGM 241 (1036)
T ss_pred CCe-EEEEEecC--ccceEEEEEEeCCcc-ccccCCCCceEEEeCCCC
Confidence 411 12455555 445559999988855 899999999999998754
No 62
>PLN02316 synthase/transferase
Probab=95.43 E-value=0.37 Score=61.61 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCCeEEEeeeecCCCCCcccCCCCCCCCcceeechhhcccCcccCCCCcceeEEEecCccceeEEEEEeC--Ccccccc
Q 002611 311 LTGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLN--ENTWLKC 388 (900)
Q Consensus 311 ~~~~~vlHWgv~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tpf~~~~~~~~~~~~~~l~~~~~g~~fVl~~~--~~~W~k~ 388 (900)
....|-||||--+ |.-+..+++|-. +...++|......+++...---|=||+-.+ +++|=+|
T Consensus 506 ~~~ev~~~g~~Nr-----Wth~~~~~~~~~-----------m~~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~ 569 (1036)
T PLN02316 506 GKPEVWFRGSFNR-----WTHRLGPLPPQK-----------MVPADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNR 569 (1036)
T ss_pred CCceEEEEccccC-----cCCCCCCCCcee-----------eeecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCC
Confidence 4458899999888 998877776641 222233432234466633333378888664 6788888
Q ss_pred CCcceEEeCCCC
Q 002611 389 MENDFYIPLTSS 400 (900)
Q Consensus 389 ~g~df~i~l~~~ 400 (900)
+|.||++|...+
T Consensus 570 ~~~dyh~~v~g~ 581 (1036)
T PLN02316 570 NGLDYHIPVFGG 581 (1036)
T ss_pred CCcCCcccccCC
Confidence 999999999854
No 63
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.26 E-value=0.063 Score=48.71 Aligned_cols=66 Identities=23% Similarity=0.506 Sum_probs=36.3
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhh
Q 002611 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (900)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (900)
+.||+|. ..|..+|.- . +.+ .+.+-. .| .-..+|.++ +. -..|+||++++. +.|=+
T Consensus 21 v~~~~G~-------n~W~~~~~~------~--m~~-~~~~~~---~~--~~~~tv~vP-~~-a~~~dfvF~dg~-~~wDN 76 (87)
T PF03423_consen 21 VHLHGGF-------NRWTHVPGF------G--MTK-MCVPDE---GG--WWKATVDVP-ED-AYVMDFVFNDGA-GNWDN 76 (87)
T ss_dssp EEEEETT-------S-B-SSS-E------E---EE-ESS------TT--EEEEEEE---TT-TSEEEEEEE-SS-S-EES
T ss_pred EEEEecC-------CCCCcCCCC------C--cce-eeeeec---CC--EEEEEEEEc-CC-ceEEEEEEcCCC-CcEeC
Confidence 8899998 689766432 1 111 111111 12 244566665 33 447999999994 48999
Q ss_pred cCCcceeEeC
Q 002611 204 HRGRDFKVPL 213 (900)
Q Consensus 204 ~~g~df~v~l 213 (900)
|+|.||++++
T Consensus 77 N~g~nY~~~V 86 (87)
T PF03423_consen 77 NNGANYHFPV 86 (87)
T ss_dssp TTTS-EEEES
T ss_pred CCCccEEEEc
Confidence 9999999985
No 64
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=95.07 E-value=0.62 Score=60.65 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=107.0
Q ss_pred CCCCCcCC-----CChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHH---HhcCCc-eEEeecccCCCcccc
Q 002611 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL---EATEPY-FAVGEYWDSLSYTYG 714 (900)
Q Consensus 644 ~~lpdLN~-----~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~---~~~~p~-~liGEvw~~~~~l~g 714 (900)
.+..+|+| .||.+|++|.++.+... .=.+|||+|.++..|...-+.++ ++++|+ ++++|.+.+..
T Consensus 474 GDcVKLRYG~~peDsP~LW~~M~~Y~~~~A--kiF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTGSe---- 547 (1464)
T TIGR01531 474 GDSVKLRYGNKPEDSPYLWQHMKEYTEMTA--RIFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTGSE---- 547 (1464)
T ss_pred cceeeeccCCCCcCCHHHHHHHHHHHHHHH--HhhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCCcH----
Confidence 44555655 57999999999988876 56899999999988876655554 456899 79999987631
Q ss_pred cCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchh---hhhhhhhcCC-C--------CCCcCCCCCcceee
Q 002611 715 EMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE---YWRLSDEKGK-P--------PGVVGWWPSRAVTF 782 (900)
Q Consensus 715 ~m~y~~~~~~~~i~~~l~~~~~~~s~fdf~l~~~l~~~l~~~~---~~~l~~~~~~-~--------~~~~~~~P~~~vnf 782 (900)
+|++ -|+... +. ...|+++++..+ +.++....+. + .......|.+++-|
T Consensus 548 e~D~----------~Fv~rL-----GI----nsLIREAm~a~~~~El~rlv~r~GG~PIGs~~~~~~~~l~~~~~hALfm 608 (1464)
T TIGR01531 548 TLDN----------VFVNRL-----GI----SSLIREAMSAWDSHEEGRLVYRYGGRPVGSFKQVSPRILTASIAHALFM 608 (1464)
T ss_pred HHHH----------HHHHHh-----hH----HHHHHHHHhcCCHHHhhhHHHHhCCcccccccccccccccCCCCCceee
Confidence 1221 122211 01 112333332221 1222211110 0 00111123467778
Q ss_pred cccCCCCCcccCCCCChHHHHHHHHHHHhCCCeeeeeCCChh-H--------------H--------HHHHHHHHHHHHH
Q 002611 783 IENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-S--------------H--------YRQEIEALLSVRK 839 (900)
Q Consensus 783 lenHDt~R~~s~~~~~~~~~klA~allltlPGiP~IYyGdEf-~--------------W--------l~~~~k~Li~lRk 839 (900)
=-+||++.-..... ..+.+..|+.+.|+.-.+=.++-=||+ + | +...=+.|.+|+.
T Consensus 609 D~THDNe~P~qkRt-~~DtLp~aAlVam~~~aiGS~~GyDE~~P~~i~vV~E~R~Y~~~~~~~~~~GI~~~k~~LN~lH~ 687 (1464)
T TIGR01531 609 DCTHDNESPIEKRS-VYDTLPSAALVSMASCAIGSNRGYDELVPHHIHVVSEERYYISWPTGSPSSGIIKAKAALNKLHT 687 (1464)
T ss_pred ecCCCCCCccccCC-ccccchHHHHHHHhcCccccccCcccccCCcccccCCccccCcCCCCCCCCcHHHHHHHHHHHHH
Confidence 88999986543322 345667777777776655455433552 1 2 3333444556666
Q ss_pred hCcccccCCeeEEeecCCEEEEEE
Q 002611 840 RNKIHCRSRVEIVKAERDVYAAII 863 (900)
Q Consensus 840 ~~paL~~G~~~~l~~~~~v~a~~r 863 (900)
....-...+..+.+.++++++..|
T Consensus 688 ~l~~~g~~e~~vh~~~~~~itv~R 711 (1464)
T TIGR01531 688 SLGEKGFIQVYVDQMDGDIVAVTR 711 (1464)
T ss_pred HHHHcCCCeEeEeccCCCEEEEEE
Confidence 543222223333334778888777
No 65
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.00 E-value=0.09 Score=63.01 Aligned_cols=148 Identities=16% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCC----ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMP----RDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~----~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.+.....+.|+.|+..-||.|++==.+--. ...+-.. ..|..+--+-=..+-.|.+|++||+.||+.|.=.-+.-
T Consensus 115 ~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 115 KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 367889999999999999999973211100 0000000 01112221222357899999999999999998654442
Q ss_pred cccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCCcCCCChHHHHHHHHHHHHHHHHhCCCeEE
Q 002611 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (900)
Q Consensus 599 t~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfR 677 (900)
...+.. ..|.- ..|.-...... ..+ ..+.....+.. +-=+|..|+.-|++|++-+...++.+|+|||-
T Consensus 195 a~~~~~-~~gv~------~eW~ly~d~~~-~~~---~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~h 263 (559)
T PF13199_consen 195 ANNNYE-EDGVS------PEWGLYKDDSH-SNQ---DTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWH 263 (559)
T ss_dssp EETT---S--SS-------GGBEEESSSB-TSB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEE
T ss_pred cccCcc-cccCC------chhhhhhccCC-Ccc---ceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEe
Confidence 221110 11110 12221000000 000 00000011111 33468899999999999999999999999999
Q ss_pred ecccc
Q 002611 678 LDFVR 682 (900)
Q Consensus 678 lD~a~ 682 (900)
+|...
T Consensus 264 lDq~G 268 (559)
T PF13199_consen 264 LDQLG 268 (559)
T ss_dssp EE-S-
T ss_pred eeccC
Confidence 99874
No 66
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.91 E-value=0.18 Score=56.56 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 526 l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
=+.+.+-++.+++.|| ++|+|-+=+.......+ .+ +..|+ +|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--YV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--ee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 4567888888988886 78887532211100001 11 34443 454 57799999999999999965443 3333
Q ss_pred CCCC-CCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecc
Q 002611 603 YQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (900)
Q Consensus 603 ~~~~-~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~ 680 (900)
++.. .+.- ..+. +... .+.. +..+..+.+ ..-+|+.||+.++...+.++..+.+.|||||-+|.
T Consensus 101 ~~~y~e~~~------~g~~---v~~~----~g~~-~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~ 166 (317)
T cd06599 101 HPRYKELKE------AGAF---IKPP----DGRE-PSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDN 166 (317)
T ss_pred CHHHHHHHH------CCcE---EEcC----CCCC-cceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecC
Confidence 3210 0000 0000 0000 0000 000111111 12378899999999999886555589999999997
Q ss_pred cc
Q 002611 681 VR 682 (900)
Q Consensus 681 a~ 682 (900)
..
T Consensus 167 ~E 168 (317)
T cd06599 167 NE 168 (317)
T ss_pred CC
Confidence 65
No 67
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=94.76 E-value=0.046 Score=61.34 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCCC--CCCCCC-CccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTESV--SPEGYM-PRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes~--s~hGYd-~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
++-+.+.+.++.+++.|| ++|||- ..-.. ...||. -.| +..|+ +|- +.++||+++|++|++||+-+. .
T Consensus 20 ~s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P 93 (317)
T cd06594 20 GGTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-P 93 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-C
Confidence 378889999999999776 678875 32100 111221 111 24454 443 478999999999999999554 4
Q ss_pred ccccCCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCe
Q 002611 598 HRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (900)
Q Consensus 598 Ht~~d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDG 675 (900)
++..++... |... ..+.- ...+...+.. ..|.+ ...-+|+.||+.++...+.++..+.+.||||
T Consensus 94 ~v~~~~~~~------y~~~~~~g~~v--k~~~g~~~~~----~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg 159 (317)
T cd06594 94 YLADDGPLY------YEEAKDAGYLV--KDADGSPYLV----DFGEF--DCGVLDLTNPAARDWFKQVIKEMLLDLGLSG 159 (317)
T ss_pred ceecCCchh------HHHHHHCCeEE--ECCCCCeeee----ccCCC--CceeeecCCHHHHHHHHHHHHHHhhhcCCcE
Confidence 554433210 1000 00000 0000000000 01111 1234789999999999998887755899999
Q ss_pred EEeccccccc
Q 002611 676 WRLDFVRGFW 685 (900)
Q Consensus 676 fRlD~a~~l~ 685 (900)
|-+|+...++
T Consensus 160 ~w~D~~E~~p 169 (317)
T cd06594 160 WMADFGEYLP 169 (317)
T ss_pred EEecCCCCCC
Confidence 9999875443
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.53 E-value=0.38 Score=53.87 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC---CCCccCC--CcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDLY--NLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hG---Yd~~Dy~--~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
|+=..+.+.|+.+++-|+|+|-+ +-...+| |+...-. .+...-....|+++|++.+|++||.+|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 55566888899999999999975 2223333 3322111 111111124689999999999999999998761
Q ss_pred cccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe
Q 002611 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (900)
Q Consensus 599 t~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl 678 (900)
.|.....-. .+|.- . ...| ..|.+..+..=+|..+++||+|++++++... ..|+|..-|
T Consensus 85 --kD~~la~~~-------pe~av---~------~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqf 143 (316)
T PF13200_consen 85 --KDPVLAEAH-------PEWAV---K------TKDG--SVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQF 143 (316)
T ss_pred --cChHHhhhC-------hhhEE---E------CCCC--CcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEe
Confidence 111100000 11210 0 0001 1122223344588899999999999999998 899999999
Q ss_pred cccc
Q 002611 679 DFVR 682 (900)
Q Consensus 679 D~a~ 682 (900)
|-+.
T Consensus 144 DYIR 147 (316)
T PF13200_consen 144 DYIR 147 (316)
T ss_pred eeee
Confidence 9874
No 69
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=93.21 E-value=0.61 Score=57.25 Aligned_cols=129 Identities=11% Similarity=0.070 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC----CCCccCCCcCCCCCCHHHHHH-HHHHHHHcCCEEEEEeccCccc
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEG----YMPRDLYNLSSRYGNIDELKD-VVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hG----Yd~~Dy~~IDp~lGt~edfk~-LV~~AH~~GIrVILD~V~NHt~ 600 (900)
-+.+...|+.|+++|+|+|||--+-+..++.- |-|.++.-+ -.+-|-. .-+.+|++|++|..=+-.--..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~-----r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM-----RADLFNRVAWQLRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc-----ccCCcCHHHHHHHHhhCCEEEEeccceeec
Confidence 57789999999999999999988766554322 333333222 2222222 1223999999997554332221
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecc
Q 002611 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (900)
Q Consensus 601 ~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~ 680 (900)
-.... ..- ..+.. .......+ +. + ...|+-.+|+||+.|.++..-+++.+.|||.-||-
T Consensus 408 ~~~~~--~~~------~~~~~---~~~~~~~~-~~-----~----~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 408 LDPTL--PRV------KRLDT---GEGKAQIH-PE-----Q----YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred cCCCc--chh------hhccc---cCCccccC-CC-----C----CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 10000 000 00000 00000000 00 0 12288999999999999999999888999999964
No 70
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=92.94 E-value=0.15 Score=57.18 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~L--GVt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+-+.+.+.++.+++. -+++|+|=-- .....++ .| +..|+ +|- +.++||+++|++|+|||+-+. -++.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWF--YWPKQGW--GE-WKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEech--hhcCCCc--ee-EEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4677788888888876 5677777411 1111221 12 34443 454 457899999999999999554 3444
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecc
Q 002611 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (900)
Q Consensus 601 ~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~ 680 (900)
.++... ..... ..+. +... .+......|.+ ...-+|+.||+.++...+.++..+.+.|||||-+|.
T Consensus 92 ~~~~~y----~e~~~-~g~~---v~~~----~g~~~~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 157 (319)
T cd06591 92 PETENY----KEMDE-KGYL---IKTD----RGPRVTMQFGG--NTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDA 157 (319)
T ss_pred CCChhH----HHHHH-CCEE---EEcC----CCCeeeeeCCC--CccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 333210 00000 0000 0000 00000001111 123478999999998877765444489999999999
Q ss_pred ccc
Q 002611 681 VRG 683 (900)
Q Consensus 681 a~~ 683 (900)
...
T Consensus 158 ~Ep 160 (319)
T cd06591 158 AEP 160 (319)
T ss_pred CCC
Confidence 863
No 71
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.66 E-value=0.37 Score=54.55 Aligned_cols=133 Identities=16% Similarity=0.187 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+.+.+.++.+++.|| ++|+|-.-+.. +|. + +..|+ +|- +.++|++++|++|++|++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 56778888999998876 67887543321 222 1 34454 454 4689999999999999976544 3322
Q ss_pred CCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEec
Q 002611 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (900)
Q Consensus 602 d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD 679 (900)
+.. +..|... ..+.- ...+...+. ...|.+.. --+|+.||+.++...+.++..+ +.|||||-+|
T Consensus 91 ~~~-----~~~~~e~~~~g~~v--~~~~g~~~~----~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D 156 (339)
T cd06604 91 DPG-----YDVYEEGLENDYFV--KDPDGELYI----GRVWPGLS--AFPDFTNPKVREWWGSLYKKFV-DLGVDGIWND 156 (339)
T ss_pred CCC-----ChHHHHHHHCCeEE--ECCCCCEEE----EEecCCCc--cccCCCChHHHHHHHHHHHHHh-hCCCceEeec
Confidence 110 0011000 00000 000000000 00111111 2268899999999999999888 8999999999
Q ss_pred ccc
Q 002611 680 FVR 682 (900)
Q Consensus 680 ~a~ 682 (900)
...
T Consensus 157 ~~E 159 (339)
T cd06604 157 MNE 159 (339)
T ss_pred CCC
Confidence 875
No 72
>PRK10426 alpha-glucosidase; Provisional
Probab=92.65 E-value=0.65 Score=57.05 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcC--CCEEEeCCCCCCCCCCCCCCccC-------CCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 526 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-------YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 526 l~GI~~kLdYLk~LG--Vt~I~L~PIfes~s~hGYd~~Dy-------~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
-+.+.+.++.+++.| +++|||-- . +++...+| +..|+ +|- +.++||+++|++|+|||+=+-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ldd-w-----~~~~~~~~g~~~~~~~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQD-W-----SGIRMTSFGKRLMWNWKWDSERYP---QLDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEec-c-----cccccccccccccccceEChhhCC---CHHHHHHHHHHCCCEEEEEEc
Confidence 456888889999988 58899841 1 12211111 12232 232 578999999999999999865
Q ss_pred cCccccCCCC-----CCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHH
Q 002611 596 LNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (900)
Q Consensus 596 ~NHt~~d~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e 670 (900)
+- +..++.. .+|-+.. ..+...+.. ..|.+... -+|+.||++|+...+.++..+.+
T Consensus 291 P~-v~~~~~~y~e~~~~gy~vk------------~~~g~~~~~----~~~~~~~~--~~Dftnp~ar~Ww~~~~~~~~~~ 351 (635)
T PRK10426 291 PY-LASDGDLCEEAAEKGYLAK------------DADGGDYLV----EFGEFYAG--VVDLTNPEAYEWFKEVIKKNMIG 351 (635)
T ss_pred Cc-cCCCCHHHHHHHHCCcEEE------------CCCCCEEEe----EecCCCce--eecCCCHHHHHHHHHHHHHHHhh
Confidence 53 3322221 0111000 000000000 01111112 37889999999999988755558
Q ss_pred hCCCeEEeccccccc
Q 002611 671 IGYDGWRLDFVRGFW 685 (900)
Q Consensus 671 ~GIDGfRlD~a~~l~ 685 (900)
.|||||-+|+...+|
T Consensus 352 ~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 352 LGCSGWMADFGEYLP 366 (635)
T ss_pred cCCCEEeeeCCCCCC
Confidence 999999999865443
No 73
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=92.58 E-value=0.63 Score=52.78 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+.+.+.++.+++.|| +.|+|-.=+-. +|. | +..|+ +|-++ ..++||+++|++|+||++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFPGL-KMPEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCCCc-cHHHHHHHHHHCCCEEEEEEeC-cccc
Confidence 46778888888888775 67777432111 111 1 23332 23221 1289999999999999997543 3332
Q ss_pred CCCCCCCCCccCCC-C-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEec
Q 002611 602 HYQNQNGVWNIFGG-R-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (900)
Q Consensus 602 d~~~~~g~~~~y~g-~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD 679 (900)
+.. ...+..|.. . ..+. ....+...+. ...|.+.. .-+|+.||++++...+.++.++.+.|||||-+|
T Consensus 93 ~~~--~~~~~~~~e~~~~g~~--v~~~~g~~~~----~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 162 (339)
T cd06602 93 NEP--TGSYPPYDRGLEMDVF--IKNDDGSPYI----GKVWPGYT--VFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWID 162 (339)
T ss_pred CcC--CCCCHHHHHHHHCCeE--EECCCCCEEE----EEeCCCCC--cCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 210 011111100 0 0000 0000000000 01111112 236899999999999999988867899999999
Q ss_pred cccc
Q 002611 680 FVRG 683 (900)
Q Consensus 680 ~a~~ 683 (900)
....
T Consensus 163 ~~Ep 166 (339)
T cd06602 163 MNEP 166 (339)
T ss_pred CCCC
Confidence 8753
No 74
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.95 E-value=0.24 Score=53.46 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=50.9
Q ss_pred CCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHHHHHHHH
Q 002611 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKF 583 (900)
Q Consensus 506 ~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~~A 583 (900)
.|..+..++|.... ..+. -+.+-++.|+++|+|+|=|.-..+.. ...+| .+++ ...+.|+++|++|
T Consensus 4 ~G~~v~~~G~n~~w---~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHW---YNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETT---SGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHH
T ss_pred CCCeEEeeeeeccc---CCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHH
Confidence 34456777776431 1122 57778999999999999886543111 01111 1111 2357899999999
Q ss_pred HHcCCEEEEEeccC
Q 002611 584 HDVGMKILGDVVLN 597 (900)
Q Consensus 584 H~~GIrVILD~V~N 597 (900)
+++||+||||+--.
T Consensus 72 ~~~gi~vild~h~~ 85 (281)
T PF00150_consen 72 QAYGIYVILDLHNA 85 (281)
T ss_dssp HHTT-EEEEEEEES
T ss_pred HhCCCeEEEEeccC
Confidence 99999999987554
No 75
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=91.74 E-value=0.33 Score=57.90 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~N 597 (900)
++++++.+.|+++||+||.|+.+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 479999999999999999999874
No 76
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=91.69 E-value=0.68 Score=47.16 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
-+...+.+.+++++||++|.|. -.++++ +-+.+++.-.-..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 5678899999999999999987 222222 23444421122236678899999999999999999988864
No 77
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=91.35 E-value=0.8 Score=56.66 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeccC
Q 002611 574 DELKDVVNKFHDVGM--KILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GI--rVILD~V~N 597 (900)
.+++++-+.|+++|| +||.|+-+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478889999999999 679999874
No 78
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=90.96 E-value=0.51 Score=62.96 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEeccccccc--chhHHHHH
Q 002611 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--GGYVKDYL 693 (900)
Q Consensus 641 ~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~--~~f~~~~~ 693 (900)
....+|..+..++|+|-+..-..+..|+++=-|||.|+|.++++. ..+++.+.
T Consensus 1036 FdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr 1090 (1693)
T PRK14507 1036 FDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQ 1090 (1693)
T ss_pred ecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHH
Confidence 345778888889999999999999999988889999999999874 45777764
No 79
>PRK10658 putative alpha-glucosidase; Provisional
Probab=90.47 E-value=0.57 Score=57.79 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 526 l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
=+.+.+-++.+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.++||+++|++|+||++=+.+ +++.+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~ 352 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQK 352 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCC
Confidence 3456677777787776 4566543221 1222123 23343 333 4578999999999999987654 34333
Q ss_pred CCC-----CCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC-CCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeE
Q 002611 603 YQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (900)
Q Consensus 603 ~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGf 676 (900)
++. .+|-..+ ...+..+.+..| ....-+|+.||++|+...+.++.++ +.|||||
T Consensus 353 s~~f~e~~~~gy~vk-------------------~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgf 412 (665)
T PRK10658 353 SPLFKEGKEKGYLLK-------------------RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCF 412 (665)
T ss_pred chHHHHHHHCCeEEE-------------------CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEE
Confidence 321 0111000 001111111111 1233478999999999999999988 8999999
Q ss_pred Eeccccccc
Q 002611 677 RLDFVRGFW 685 (900)
Q Consensus 677 RlD~a~~l~ 685 (900)
-.|....+|
T Consensus 413 w~D~gE~~p 421 (665)
T PRK10658 413 KTDFGERIP 421 (665)
T ss_pred EecCCceee
Confidence 999765444
No 80
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.15 E-value=1.1 Score=50.70 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
..+.++.||+.|+|+|=|=-.. ..|+ .-+-+.+...+|.++|+++||+|+||+=+..+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv-----~P~~--------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~ 83 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWV-----NPYD--------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDF 83 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-S-----S-TT--------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS
T ss_pred CCCHHHHHHhcCCCeEEEEecc-----CCcc--------cccCCHHHHHHHHHHHHHCCCeEEEeecccCC
Confidence 3678899999999998663211 1111 44557889999999999999999999977654
No 81
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=90.01 E-value=0.42 Score=53.67 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+-+.+.+.++.+++.|| ++|+|-.=+ ..+|. .+..|+ +|- +.++||+++|++|+||++=+.+ ++.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-GIR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-ccc
Confidence 467788888888888775 677775311 11221 123343 343 5689999999999999986544 333
Q ss_pred cCCCCCCCCCccCC-CC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe
Q 002611 601 AHYQNQNGVWNIFG-GR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (900)
Q Consensus 601 ~d~~~~~g~~~~y~-g~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl 678 (900)
.+.. +..|. +. ..+.- ...+...+. + ..|.+. ..-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 90 ~~~~-----~~~~~~~~~~~~~v--~~~~g~~~~--~--~~w~G~--~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~ 156 (317)
T cd06600 90 VDQN-----YSPFLSGMDKGKFC--EIESGELFV--G--KMWPGT--TVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWL 156 (317)
T ss_pred CCCC-----ChHHHHHHHCCEEE--ECCCCCeEE--E--eecCCC--ccccCCCChHHHHHHHHHHHHHhhcCCCceEEe
Confidence 2221 11110 00 00000 000000000 0 011111 123788999999999999988877899999999
Q ss_pred cccc
Q 002611 679 DFVR 682 (900)
Q Consensus 679 D~a~ 682 (900)
|...
T Consensus 157 D~~E 160 (317)
T cd06600 157 DMNE 160 (317)
T ss_pred eCCC
Confidence 9865
No 82
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=89.95 E-value=1.7 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+++++-+.|+.+||+||.|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 478888999999999999999885
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=89.87 E-value=0.45 Score=55.76 Aligned_cols=136 Identities=25% Similarity=0.353 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-..+.+-++.+++.|| ++|++-.-+.. +|. | +..|+ +|- ++++|++.+|++|++|++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 56778888888888776 55665443222 111 2 24443 343 7899999999999999998887 3443
Q ss_pred CCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe
Q 002611 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (900)
Q Consensus 602 d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl 678 (900)
++. .+..|... .++. +. +..+....+..|. ...-+|+.||++++...+.++..++.+|||||-+
T Consensus 110 ~~~----~~~~~~~~~~~~~~---v~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 176 (441)
T PF01055_consen 110 DSP----DYENYDEAKEKGYL---VK------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWL 176 (441)
T ss_dssp TTT----B-HHHHHHHHTT-B---EB------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEE
T ss_pred CCC----cchhhhhHhhcCce---ee------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEe
Confidence 332 01111000 0000 00 0001000000011 1334778999999999999999996669999999
Q ss_pred cccccc
Q 002611 679 DFVRGF 684 (900)
Q Consensus 679 D~a~~l 684 (900)
|.....
T Consensus 177 D~~E~~ 182 (441)
T PF01055_consen 177 DFGEPS 182 (441)
T ss_dssp ESTTTB
T ss_pred ecCCcc
Confidence 996544
No 84
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=89.76 E-value=0.79 Score=51.50 Aligned_cols=137 Identities=11% Similarity=-0.036 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCC-CC-CCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTES-VS-PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes-~s-~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
+-+.+.+.++.+++.|| ++|+|-.=+-. .. ...|. | +..|+ +|- +.++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 46778888888888775 67777542111 00 00111 2 33343 454 4578999999999999998753 33
Q ss_pred ccCCCCC-CCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe
Q 002611 600 CAHYQNQ-NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (900)
Q Consensus 600 ~~d~~~~-~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl 678 (900)
..+++.. .+.- ..+. .....+...+ ....|.+... -+|+.||+.++...+.++.+. +.|||||-+
T Consensus 95 ~~~~~~y~e~~~------~g~l-~~~~~~~~~~----~~~~w~g~~~--~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~ 160 (317)
T cd06598 95 LKNSKNWGEAVK------AGAL-LKKDQGGVPT----LFDFWFGNTG--LIDWFDPAAQAWFHDNYKKLI-DQGVTGWWG 160 (317)
T ss_pred cCCchhHHHHHh------CCCE-EEECCCCCEe----eeeccCCCcc--ccCCCCHHHHHHHHHHHHHhh-hCCccEEEe
Confidence 3333210 0000 0000 0000000000 0011112222 356789999999999888876 899999999
Q ss_pred cccc
Q 002611 679 DFVR 682 (900)
Q Consensus 679 D~a~ 682 (900)
|...
T Consensus 161 D~~E 164 (317)
T cd06598 161 DLGE 164 (317)
T ss_pred cCCC
Confidence 9875
No 85
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=89.06 E-value=8 Score=48.21 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=47.6
Q ss_pred CCCCCcCC-----CChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHH---HHHHhcCCc-eEEeecccCCCc
Q 002611 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVK---DYLEATEPY-FAVGEYWDSLSY 711 (900)
Q Consensus 644 ~~lpdLN~-----~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~---~~~~~~~p~-~liGEvw~~~~~ 711 (900)
.+..+|++ ..|.++++|.++...=. .=.||+|+|.++..|-..-. +..++++|+ ++++|.+.+..+
T Consensus 496 GDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgSe~ 570 (1521)
T KOG3625|consen 496 GDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGSED 570 (1521)
T ss_pred cceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCCcc
Confidence 45556666 45889999998876554 45799999999987754333 334567898 799999987543
No 86
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.35 E-value=0.76 Score=51.14 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
+.....++-|+...+.|++-|..+=.......+ +-..-|++|+++||+.||+||+|+-+.
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 445566777888889999999865433332212 123459999999999999999998663
No 87
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=87.28 E-value=2.2 Score=46.13 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 002611 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (900)
Q Consensus 572 t~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~ 651 (900)
+.+++++.++.+|++|+||++=+--+|.+... -..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 57899999999999999999987665543210 001
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCeEEeccc
Q 002611 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (900)
Q Consensus 652 ~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a 681 (900)
.+++-++.+.+.+..+++++|+||+=+|.-
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 134445666666666777999999999974
No 88
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=86.42 E-value=7.4 Score=44.39 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcC-------CCCCCHHHHHHHHHHHHHcCCEEEEEe-cc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-------SRYGNIDELKDVVNKFHDVGMKILGDV-VL 596 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~ID-------p~lGt~edfk~LV~~AH~~GIrVILD~-V~ 596 (900)
....|..-+|.++.+.+|.++|-= .+. ..+++....|=.+- ..|=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHI-TDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeE-EcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 477788888999999999998730 000 01222222221111 011289999999999999999999998 56
Q ss_pred CccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhC
Q 002611 597 NHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 672 (900)
Q Consensus 597 NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~G 672 (900)
.|+..-.......- ..+...|.. ++.-...-.||..+|++.+++.+++...++-+.
T Consensus 94 GH~~a~~~~~p~l~--~~~~~~~~~------------------~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 94 GHTGSWGQGYPELL--TGCYAVWRK------------------YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred hhhHHHHHhChhhh--CCCCccccc------------------cccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 77754211000000 000000100 000011224889999999999999988885443
No 89
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=85.45 E-value=1.3 Score=49.04 Aligned_cols=130 Identities=11% Similarity=0.086 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCC-CC----CCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTES-VS----PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes-~s----~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
.+.+.+.+-++.+++.|| ++|+|=-=+-. .. ..+|. -+..|+ +|- +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 367788888888888665 66776221110 00 01121 134453 453 568999999999999999886
Q ss_pred cCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCe
Q 002611 596 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (900)
Q Consensus 596 ~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDG 675 (900)
+.. +.+.. ...|..+.. ........ ....-+|..||+.++...+.+..-+.+.||||
T Consensus 96 P~~-~~~~~--~~~y~~~~~---------~~~~~~~~-----------~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 96 PAD-GIRAH--EDQYPEMAK---------ALGVDPAT-----------EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CCc-ccCCC--cHHHHHHHH---------hcCCCccc-----------CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 642 11110 000100100 00000000 01123688999998876665544444899999
Q ss_pred EEecccc
Q 002611 676 WRLDFVR 682 (900)
Q Consensus 676 fRlD~a~ 682 (900)
|=.|+..
T Consensus 153 ~W~D~~E 159 (292)
T cd06595 153 WWLDWQQ 159 (292)
T ss_pred EEecCCC
Confidence 9999653
No 90
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=84.88 E-value=0.93 Score=55.09 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCeeeeeCCChh-----------------------------HH----------HHHHHHHHHHHHHhCcc
Q 002611 803 MQGYAYILTHPGTPSVFYDHIF-----------------------------SH----------YRQEIEALLSVRKRNKI 843 (900)
Q Consensus 803 klA~allltlPGiP~IYyGdEf-----------------------------~W----------l~~~~k~Li~lRk~~pa 843 (900)
..+..+-+|.||||=||+|.|. +| =...+.+++++|++++.
T Consensus 709 L~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~e 788 (889)
T COG3280 709 LAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPE 788 (889)
T ss_pred HHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhchH
Confidence 4455667899999999999983 11 12256789999999996
Q ss_pred -cccCCeeEEeecC----CEEEEEE--CC-EEEEEEeC
Q 002611 844 -HCRSRVEIVKAER----DVYAAII--DE-KVAMKLGP 873 (900)
Q Consensus 844 -L~~G~~~~l~~~~----~v~a~~r--~~-~vlVviNn 873 (900)
+..|++..+...+ .++||.| ++ .++++++.
T Consensus 789 lF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 789 LFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred hhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 6899999998654 5678877 33 34555444
No 91
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=84.22 E-value=2.2 Score=48.89 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEEEeccCccccCCCC
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt--~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~ 605 (900)
.+.+.|.-+|++|||+|-|..+.-+ .++|.=|. -+.|.++|+.|+++||+|||-.. .+.. |
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~---P- 73 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWS------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAP---P- 73 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHH------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-----
T ss_pred HHHHHHHHHHHcCCCEEEEEEechh------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cccc---c-
Confidence 5678899999999999998776421 22222222 23588999999999999999765 2221 1
Q ss_pred CCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhC----CCeEEeccc
Q 002611 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG----YDGWRLDFV 681 (900)
Q Consensus 606 ~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~G----IDGfRlD~a 681 (900)
.|-....+. .......+.. .....-...+..+|.+|+++.+.++..++.++ |-||-+|.-
T Consensus 74 ------------~Wl~~~~Pe-~~~~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 74 ------------AWLYDKYPE-ILPVDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp ------------HHHHCCSGC-CC-B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred ------------cchhhhccc-ccccCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 110000000 0000000100 01112233567899999999888877776665 668888764
No 92
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=82.88 E-value=2.2 Score=54.44 Aligned_cols=132 Identities=16% Similarity=0.160 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+.+.+-++.+++.|| ++|||--=+ ..+|.. |..|+ +|- +.++|++++|++|+|+|.=+.+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 46778888888888765 668774211 123332 45554 554 4689999999999999764432 2221
Q ss_pred CCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEec
Q 002611 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (900)
Q Consensus 602 d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD 679 (900)
+ ..|..|+.. .+.. ....+...|.+ ..|.+.... .|+.||++|++..+.++.++ +.|||||-+|
T Consensus 268 d-----~gY~~y~eg~~~~~f--vk~~~G~~y~G----~vWpG~~~f--pDFTnP~ar~WW~~~~k~l~-d~GVDG~W~D 333 (978)
T PLN02763 268 E-----EGYFVYDSGCENDVW--IQTADGKPFVG----EVWPGPCVF--PDFTNKKTRSWWANLVKDFV-SNGVDGIWND 333 (978)
T ss_pred C-----CCCHHHHhHhhcCee--EECCCCCeeEe----eecCCCccc--cCCCCHHHHHHHHHHHHHHh-cCCCcEEEcc
Confidence 1 112112100 0000 00000001110 111111222 47889999999999888888 7999999999
Q ss_pred cc
Q 002611 680 FV 681 (900)
Q Consensus 680 ~a 681 (900)
+-
T Consensus 334 mn 335 (978)
T PLN02763 334 MN 335 (978)
T ss_pred CC
Confidence 85
No 93
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.78 E-value=1.9 Score=54.14 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCEEEEEeccCccccCCCC-----CCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCCc
Q 002611 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNI 649 (900)
Q Consensus 576 fk~LV~~AH~~GIrVILD~V~NHt~~d~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdL 649 (900)
.|+|++.+|++|||+|+=+.+. ...+++. .+|-..+ ...+....+..|. ...-+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k-------------------~~~g~~~~~~~w~~~~a~~ 382 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVK-------------------DPDGEIYQADFWPGNSAFP 382 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEE-------------------CCCCCEeeecccCCccccc
Confidence 3499999999999999877664 2333321 1111100 0112222222232 33447
Q ss_pred CCCChHHHHHHHH-HHHHHHHHhCCCeEEeccccc
Q 002611 650 DHSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVRG 683 (900)
Q Consensus 650 N~~np~Vr~~i~~-vl~~W~~e~GIDGfRlD~a~~ 683 (900)
|+.||++|+...+ ....++ ++|||||-.|+...
T Consensus 383 DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp 416 (772)
T COG1501 383 DFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNEP 416 (772)
T ss_pred CCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCCC
Confidence 8899999999994 556677 99999999999754
No 94
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=82.30 E-value=8.9 Score=47.67 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCC--CccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC-c
Q 002611 524 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYM--PRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN-H 598 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt--~I~L~PIfes~s~hGYd--~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N-H 598 (900)
+++..+.+..++.+++||. .+|. +--|+ -+||.-=+-.|++ |+++++.+|++|+|+|+=+-++ +
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~--------DiDyMd~ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVI--------DIDYMDGYKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeee--------ehhhhhcccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccc
Confidence 6899999999999999986 5542 11222 3444333345666 9999999999999987654422 1
Q ss_pred cccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCC-CCCCCCCC-CCCcCCCChHHHHHHHHHHHHHHHHhCCCeE
Q 002611 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNK-SSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (900)
Q Consensus 599 t~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~-~~~~~~~~-lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGf 676 (900)
+.. .|..|+. .... +..-....+.. ..+..|.+ ..=.|+.||.+.....+-++..-++.++||+
T Consensus 377 ~~~-------~y~~y~~------g~~~-~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~ 442 (805)
T KOG1065|consen 377 TNS-------SYGPYDR------GVAK-DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGF 442 (805)
T ss_pred cCc-------cchhhhh------hhhh-ceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccce
Confidence 111 1222211 0000 00000000111 11112222 2225678898888888888777778999999
Q ss_pred Eeccc
Q 002611 677 RLDFV 681 (900)
Q Consensus 677 RlD~a 681 (900)
=+|+-
T Consensus 443 wiDmn 447 (805)
T KOG1065|consen 443 WIDMN 447 (805)
T ss_pred EEECC
Confidence 99994
No 95
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=82.21 E-value=8.5 Score=45.95 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=23.1
Q ss_pred CCCCcceeecccCCCCCcccCCCCChHHHHH
Q 002611 774 WWPSRAVTFIENHDTGSTQGHWRFPGGREMQ 804 (900)
Q Consensus 774 ~~P~~~vnflenHDt~R~~s~~~~~~~~~kl 804 (900)
.||.++|.++++||++.+..-+.......+.
T Consensus 392 ~~~~nsva~tsTHD~ptl~gww~~~~~~~~~ 422 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLRGWWEELDEELRR 422 (520)
T ss_pred hcccceeEEeccCCChhHHHHHhCCCHHHHH
Confidence 4666899999999999888777654444433
No 96
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.89 E-value=3 Score=47.69 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCeEEecccc
Q 002611 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (900)
Q Consensus 652 ~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~ 682 (900)
.++..|+.+++.+..+++++|.||+-||--.
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~ 122 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIEQ 122 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcccC
Confidence 4688899888877778889999999999753
No 97
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=80.76 E-value=4.2 Score=46.12 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+-..+.+.++.+++.+| ++|||=.=+- .+|. .+..|+ +|-+ .++|++++|++|++||+-+.+- +.
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~ 89 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS 89 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee
Confidence 356777788888877664 7787754221 2221 244554 5644 4789999999999999876542 11
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecc
Q 002611 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (900)
Q Consensus 601 ~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~ 680 (900)
.|. .|.. . ... .|+.||++|++-.+..+.+. +.|||||=+|+
T Consensus 90 ------~g~--------~~~~------------~---------~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dm 131 (332)
T cd06601 90 ------YGG--------GLGS------------P---------GLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDM 131 (332)
T ss_pred ------cCc--------cCCC------------C---------cee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCC
Confidence 010 1110 0 012 45679999999888888887 78999999998
Q ss_pred cc
Q 002611 681 VR 682 (900)
Q Consensus 681 a~ 682 (900)
..
T Consensus 132 nE 133 (332)
T cd06601 132 TT 133 (332)
T ss_pred CC
Confidence 64
No 98
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.29 E-value=5.5 Score=46.98 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC--------------C-CCCCCCCCCCCCccCCCcCCCCC-------------CHHHH
Q 002611 525 WYMELKEKATELSSLGFSVIWLP--------------P-PTESVSPEGYMPRDLYNLSSRYG-------------NIDEL 576 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~--------------P-Ifes~s~hGYd~~Dy~~IDp~lG-------------t~edf 576 (900)
+...|.+-+|.++..++|.++|- | +.+..+..++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 47778888888888889988873 1 11122334444333333333332 78999
Q ss_pred HHHHHHHHHcCCEEEEEe-ccCcccc
Q 002611 577 KDVVNKFHDVGMKILGDV-VLNHRCA 601 (900)
Q Consensus 577 k~LV~~AH~~GIrVILD~-V~NHt~~ 601 (900)
++||+-|++|||.||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999988 6778764
No 99
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=80.22 E-value=2.6 Score=46.96 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
..-..-+++||+||||+|-+ |.|||..--.+ .++++.+.||.||+|+---+.+.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~----CM~~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDE----CMSAFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HH----HHHHHHHTT-EEEEES-BTTBS-
T ss_pred HHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHH----HHHHHHhCCCEEEEecCCCCccc
Confidence 44555689999999999985 67777764444 34455668999999998765544
No 100
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=79.64 E-value=11 Score=41.27 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEeCCCCCCCCCCCCCCccC-CCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LG--Vt~I~L~PIfes~s~hGYd~~Dy-~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
.+-+.+.+.++.+++.| +++|+|-.-+... | .++ +..|+ +|. +.++||+.+|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh
Confidence 57788889999888855 5688886544332 1 111 23443 454 4688999999999999996543
No 101
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=79.50 E-value=5.9 Score=44.55 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 645 AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 645 ~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
+--.+|..+++.++.|.+.+...+ +.|+|||=+|..+..
T Consensus 134 g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 134 GNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred CceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 334588999999999998887777 899999999998753
No 102
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=79.17 E-value=9.9 Score=41.13 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~ 652 (900)
..++..++++||++|++||+=+- ++... . |. --..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-------~---------------------~~----------------~~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-------E---------------------FT----------------AALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-------c---------------------ch----------------hhhc
Confidence 35788999999999999998542 11100 0 00 0124
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCeEEeccccccc-----chhHHHHHHhcCC
Q 002611 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-----GGYVKDYLEATEP 698 (900)
Q Consensus 653 np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~-----~~f~~~~~~~~~p 698 (900)
++..|+.+++.+..+++++|.||.-+|.-.... ..|++++.++.++
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 678888888877777889999999999754222 2466666665544
No 103
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=79.01 E-value=23 Score=40.11 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~ID------------p~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
+..-|.+-+|.++..++|.++|--- +. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 5777888889999999999988431 11 11222222221111 1122789999999999999999999
Q ss_pred Ee-ccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHH
Q 002611 593 DV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (900)
Q Consensus 593 D~-V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e 670 (900)
.+ ++-|+..--. .|..+.. ..+.. ..+. ..-.....||..+|++.+++.+++...++-
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~-~~~~~-------~~~~--------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC-DGKAK-------PLYT--------GIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc-CCCCC-------cccc--------ccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 88 5667653110 0000000 00000 0000 000112358999999999999999888743
No 104
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=78.91 E-value=3 Score=37.79 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.4
Q ss_pred eEEEecCccceeEEEEEeCCccccccCCcceEEeC
Q 002611 363 RLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (900)
Q Consensus 363 ~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~i~l 397 (900)
..|++...-..|-||++.++++|=+|+|.||+++.
T Consensus 52 ~tv~vP~~a~~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 52 ATVDVPEDAYVMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEE--TTTSEEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEcCCceEEEEEEcCCCCcEeCCCCccEEEEc
Confidence 34677445557999999987899999999999985
No 105
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.65 E-value=16 Score=41.14 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC-------CCCCCC--CCCC-CC------CccCCCc--CCCCCCHHHHHHHHHHHHHc
Q 002611 525 WYMELKEKATELSSLGFSVIWLP-------PPTESV--SPEG-YM------PRDLYNL--SSRYGNIDELKDVVNKFHDV 586 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~-------PIfes~--s~hG-Yd------~~Dy~~I--Dp~lGt~edfk~LV~~AH~~ 586 (900)
...-|.+-|+.++.+++|.++|- ++-..+ ...+ |. +..+... ...+=|.+|+|+||+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 47778888899999999999981 110000 0000 00 0001111 11222789999999999999
Q ss_pred CCEEEEEe-ccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHH
Q 002611 587 GMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (900)
Q Consensus 587 GIrVILD~-V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~ 665 (900)
||.||-.+ ++.|+..--.. | +. +...+. ......-.||..+|++.+++.+++.
T Consensus 95 gI~vIPEID~PGH~~a~~~~-------~-------pe--------l~~~~~----~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKA-------M-------PE--------LGLKNP----FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred CCeEeccCCCcHHHHHHHHh-------h-------HH--------hcCCCc----ccCCCcccccCCCHHHHHHHHHHHH
Confidence 99999888 56776531100 0 00 000000 0011223478899999999999999
Q ss_pred HHHHHhC
Q 002611 666 WLRNEIG 672 (900)
Q Consensus 666 ~W~~e~G 672 (900)
..++-+.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 8885555
No 106
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=76.85 E-value=19 Score=40.41 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 002611 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (900)
Q Consensus 572 t~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~ 651 (900)
+.+++++-|++||++|+|||+-+ +... +. ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~~----~~---------------------------------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGAN----GH---------------------------------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCCC----Cc---------------------------------------ccc
Confidence 56789999999999999999864 2100 00 012
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCeEEecccc
Q 002611 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (900)
Q Consensus 652 ~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~ 682 (900)
.++.-|+.+++.+..+++++|+||+-||--.
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 3456678888888888889999999999865
No 107
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=76.05 E-value=3.2 Score=47.09 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCCCCCCCCCCCCccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGV--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+-..+.+.++.+++.|| ++|+|-.=+. .+|. .+..|+ +|- +.++||+++|++|+|||+-+.+- +.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~ 89 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IK 89 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-ee
Confidence 457778888888888665 6677653211 1222 245554 454 56889999999999999987643 22
Q ss_pred cCCCCCCCCCccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHH--HhCCCeE
Q 002611 601 AHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDGW 676 (900)
Q Consensus 601 ~d~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~--e~GIDGf 676 (900)
.+.. +..|... ..+.- ...+...|.. ..|.+. ..-+|+.||++++...+.++..+. ..|+|||
T Consensus 90 ~~~~-----~~~y~e~~~~g~~v--k~~~g~~~~~----~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~ 156 (339)
T cd06603 90 RDDG-----YYVYKEAKDKGYLV--KNSDGGDFEG----WCWPGS--SSWPDFLNPEVRDWWASLFSYDKYKGSTENLYI 156 (339)
T ss_pred cCCC-----CHHHHHHHHCCeEE--ECCCCCEEEE----EECCCC--cCCccCCChhHHHHHHHHHHHHhhcccCCCceE
Confidence 2110 0001000 00000 0000000000 011111 123788999999999999988874 3699999
Q ss_pred Eecccc
Q 002611 677 RLDFVR 682 (900)
Q Consensus 677 RlD~a~ 682 (900)
=+|+..
T Consensus 157 w~D~~E 162 (339)
T cd06603 157 WNDMNE 162 (339)
T ss_pred EeccCC
Confidence 999764
No 108
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.57 E-value=33 Score=38.60 Aligned_cols=123 Identities=13% Similarity=0.168 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCc-----CCCCCCHHHHHHHHHHHHHcCCEEEEEe-ccCc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-----SSRYGNIDELKDVVNKFHDVGMKILGDV-VLNH 598 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~I-----Dp~lGt~edfk~LV~~AH~~GIrVILD~-V~NH 598 (900)
...-|.+-||.++.+++|.++|-= .+.. .+++....|=.+ ...+=|.+|+++||+-|.++||.||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd~-~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHL-TDDQ-GFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEE-ecCC-CceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 477888889999999999887731 0000 111111111111 0112378999999999999999999998 5677
Q ss_pred cccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHH
Q 002611 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (900)
Q Consensus 599 t~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~ 669 (900)
+..--. .|..+. ..+. .+. ....++. .-+-||..+|++.+++.+++..+++
T Consensus 94 ~~a~~~----~ypel~----------~~~~-~~~----~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 94 ASAIAV----AYPELA----------SGPG-PYV----IERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred hHHHHH----hCHHhc----------cCCC-ccc----ccccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 753110 000000 0000 000 0001111 1135899999999999999988873
No 109
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.25 E-value=30 Score=39.62 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-----------CCC----CCCCCCCCCc----cCCCcCC--CCCCHHHHHHHHHHH
Q 002611 525 WYMELKEKATELSSLGFSVIWLPP-----------PTE----SVSPEGYMPR----DLYNLSS--RYGNIDELKDVVNKF 583 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~P-----------Ife----s~s~hGYd~~----Dy~~IDp--~lGt~edfk~LV~~A 583 (900)
...-|.+-+|.++.+++|.++|-- -++ .++..++... ......+ .+=|.+|+++||+-|
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHH
Confidence 367788888999999999999832 111 1111111110 0011111 122689999999999
Q ss_pred HHcCCEEEEEe-ccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHH
Q 002611 584 HDVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (900)
Q Consensus 584 H~~GIrVILD~-V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~ 662 (900)
.++||+||-.+ ++.|+..--.. +..+.. .+. ...+.+.. ......||..+|++.+++.+
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~----~pel~~----------~~~-----~~~~~~~~-~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA----YPELGC----------TGG-----PGSVVSVQ-GVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh----CccccC----------CCC-----CCcccccc-CcCCCccCCCChhHHHHHHH
Confidence 99999999998 56777531100 000000 000 00000000 01122488899999999999
Q ss_pred HHHHHHH
Q 002611 663 WLCWLRN 669 (900)
Q Consensus 663 vl~~W~~ 669 (900)
++...++
T Consensus 156 ll~E~~~ 162 (357)
T cd06563 156 VLDEVAE 162 (357)
T ss_pred HHHHHHH
Confidence 9888874
No 110
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=73.63 E-value=48 Score=38.47 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCC
Q 002611 530 KEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG 608 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g 608 (900)
.+=++-+|+.|...|-|+-=..-+ .-+.=...+|..++... .-|-+++|+++|+++||++-+ -|..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~----Y~S~-------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL----YHSL-------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE----EcCH--------
Confidence 455677899999998876543322 11211234566666544 458899999999999999988 2222
Q ss_pred CCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHH---HHHHHHHHHHhCCCeEEeccccccc
Q 002611 609 VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVRGFW 685 (900)
Q Consensus 609 ~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i---~~vl~~W~~e~GIDGfRlD~a~~l~ 685 (900)
.+|... .|... ..........+...+|+ ..-++.++.+||-|.+=+|.+-.-+
T Consensus 151 --------~DW~~p-------~y~~~---------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~ 206 (384)
T smart00812 151 --------FDWFNP-------LYAGP---------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAP 206 (384)
T ss_pred --------HHhCCC-------ccccc---------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 123210 01000 00000112234566777 6677888889999999999874332
Q ss_pred chh-----HHHHHHhcCCce---EEeecc
Q 002611 686 GGY-----VKDYLEATEPYF---AVGEYW 706 (900)
Q Consensus 686 ~~f-----~~~~~~~~~p~~---liGEvw 706 (900)
... +.+++....|.. +|..-|
T Consensus 207 ~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 207 DDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred cchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 221 223345556764 665544
No 111
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=70.27 E-value=14 Score=41.23 Aligned_cols=122 Identities=9% Similarity=0.108 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcC-----------CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGD 593 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~ID-----------p~lGt~edfk~LV~~AH~~GIrVILD 593 (900)
++.-|.+-+|.++.+++|.++|-=- +. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4777888899999999999987311 00 01122211111110 11236899999999999999999999
Q ss_pred e-ccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHh
Q 002611 594 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 671 (900)
Q Consensus 594 ~-V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~ 671 (900)
+ ++.|+..--..... . ...+ +.. +.+. ..-..||..+|++.+++.+++..+++-+
T Consensus 92 iD~PGH~~a~~~~~p~----l----------~~~~---~~~-----~~~~-~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 92 IDMPGHSTAFVKSFPK----L----------LTEC---YAG-----LKLR-DVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred ccchHHHHHHHHhCHH----h----------ccCc---ccc-----CCCC-CCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 8 67777541100000 0 0000 000 0000 0112488899999999999999888433
No 112
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.31 E-value=16 Score=40.80 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC--CCCCCCCCCCCCccCCCcC--CCCCCHHHHHHHHHHHHHcCCEEEEEe-ccCcc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPP--PTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 599 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~P--Ifes~s~hGYd~~Dy~~ID--p~lGt~edfk~LV~~AH~~GIrVILD~-V~NHt 599 (900)
+..-|.+-++.++.+|+|.++|-= -|+.. ++-.+. ...=|.+|+++|++-|.++||.||-.+ ++.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~--------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYE--------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecC--------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 477788899999999999998821 11111 111111 112278999999999999999999876 45666
Q ss_pred ccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhC
Q 002611 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 672 (900)
Q Consensus 600 ~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~G 672 (900)
..--. +..|.. ..+.. ..--.||..+|+..+++.+.+...++-+.
T Consensus 87 ~~~l~-----~~~~~~---------------l~~~~--------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILK-----HPEFRH---------------LREVD--------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHh-----Cccccc---------------ccccC--------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 43110 000100 00000 00123788899999999998888874433
No 113
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=66.65 E-value=16 Score=40.34 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHH---HHHHHHHHHcCCEEEEEecc
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDEL---KDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edf---k~LV~~AH~~GIrVILD~V~ 596 (900)
-.+.|.-||.-|||.|-|-=.. +.||. .=++-.|+..|+ -++.++|.+.||||++|+-+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwn-----dP~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWN-----DPYDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEec-----CCccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 3566888999999998663221 11221 112333444444 45667888999999999854
No 114
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=66.58 E-value=4.9 Score=45.26 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
-..+.|..+|++|+|+|..-=..... ...| .-|| -...||.+|++.|+++||.|||-.=+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df-------~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDF-------TGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCC--cccc-------cchhhHHHHHHHHHHcCcEEEecccc
Confidence 35688899999999999864222111 1111 1222 23478999999999999999987433
No 115
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=65.89 E-value=12 Score=46.54 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCC-----CCCCCCCCccCCCcCCCCCCHHHHHHHH
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVV 580 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes-----~s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (900)
|||..+.+-++.+++.|.+.++|+|+... ..+..|.+.+-+.+||.|=+.+.+-++.
T Consensus 162 GDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 162 GDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred ecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 99999999999999999999999999953 2567899999999999998887766653
No 116
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=64.73 E-value=29 Score=39.40 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
..++.....++=|+..|..-...-+....+|. -.+.+-+ .+.||+|++++|++|-+|++=+ +|.|...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 45555556667688877665444333211111 1112223 4689999999999999999865 7888765
No 117
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=64.38 E-value=24 Score=38.94 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC-CCC-CCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002611 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGY-MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~-hGY-d~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD 593 (900)
+|-+.+....-+|+-+++|+..|.+ +..-+ +++ ...|+....+. .++++||+-|+++|++|+|=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEE
Confidence 4679999999999999999999998 33311 111 24555555554 78999999999999999874
No 118
>PRK15452 putative protease; Provisional
Probab=64.10 E-value=37 Score=40.16 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
|++..+. ..-+.|+++||+.. -|.... ...+| +.++|++.|+.||++|++|.+
T Consensus 11 g~~e~l~----aAi~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMR----YAFAYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHH----HHHHCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 5655544 44477999999944 222211 11222 468899999999999999977
No 119
>smart00632 Aamy_C Aamy_C domain.
Probab=63.97 E-value=11 Score=33.59 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.0
Q ss_pred ecC-CEEEEEECCEEEEEEeCCCC
Q 002611 854 AER-DVYAAIIDEKVAMKLGPGHY 876 (900)
Q Consensus 854 ~~~-~v~a~~r~~~vlVviNn~~~ 876 (900)
.++ ++|+|.|+++.+|++|++..
T Consensus 5 ~~~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 5 DNGDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred ECCCeEEEEECCCeEEEEEECCCC
Confidence 344 49999999999999999754
No 120
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=63.58 E-value=12 Score=35.56 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD 593 (900)
.-.-+.+-++.+.++|+..+|+.|= +.-+++++.|+++||+|+-.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 3567888899999999999999983 44577888999999999854
No 121
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=62.24 E-value=6.9 Score=46.82 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCH-HHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCCCCccCCCcCCCCCCHHHHH
Q 002611 524 RWY-MELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELK 577 (900)
Q Consensus 524 G~l-~GI~~kLdYLk~LGVt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk 577 (900)
||| ..+.+-++.+++.|+..++|.|+++.. ....|.+.+-+.+||.|=+.+.+.
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~ 71 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALP 71 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhh
Confidence 899 999999999999999999999999887 333899999999999987765443
No 122
>PLN02950 4-alpha-glucanotransferase
Probab=62.15 E-value=14 Score=47.42 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCC------CCCCCccCCCcCCCCCCHHHHH
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSP------EGYMPRDLYNLSSRYGNIDELK 577 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~------hGYd~~Dy~~IDp~lGt~edfk 577 (900)
|||.++.+-+|.+++.|.+.|+|+|+.+.... -.|.+.+-+++||.|=+.+++-
T Consensus 280 GDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 280 GEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred eCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 99999999999999999999999999886621 3799999999999998876663
No 123
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=62.02 E-value=15 Score=45.87 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=47.7
Q ss_pred CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-----C-CCCCCccCCCcCCCCCCHHHHH
Q 002611 522 SG-RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (900)
Q Consensus 522 ~G-G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s-----~-hGYd~~Dy~~IDp~lGt~edfk 577 (900)
.| |||..+.+-+|.+++.|.+.|+|+||..... + -.|.+.+-+.+||.|=+.+.+.
T Consensus 77 ~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 35 8999999999999999999999999988752 2 3799999999999988876653
No 124
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=60.16 E-value=13 Score=43.32 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=41.0
Q ss_pred CCCCCcCC-----CChHHHHHHHHHHHHHHHHhCCCeEEecccccccchhHHHHHH---hcCCc
Q 002611 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY 699 (900)
Q Consensus 644 ~~lpdLN~-----~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~~f~~~~~~---~~~p~ 699 (900)
.+..+|+| .+|.+|++|.++.+... .-.+|||+|.++..|-.+-+.+++ +++|+
T Consensus 361 GDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 361 GDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 45556665 58999999999998886 578999999999888766555544 34564
No 125
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=59.21 E-value=1.2e+02 Score=33.62 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCH-HHHHHHH-HHHHHcCCEEEEEeccCccccCCCCC
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNI-DELKDVV-NKFHDVGMKILGDVVLNHRCAHYQNQ 606 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~-edfk~LV-~~AH~~GIrVILD~V~NHt~~d~~~~ 606 (900)
+-.-++.|+++|+|+|||-++.+..++.-.+.. |=.+.++--. +-|-+.+ +...+.|++|..=+.. .+-+-+.
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~- 93 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK- 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC-
Confidence 455567899999999999998877655444332 2233333333 4466666 4555889999876654 1211110
Q ss_pred CCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe
Q 002611 607 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (900)
Q Consensus 607 ~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl 678 (900)
. ..|..... .. ..-.....|..-+|++|+.|.++-.-+.....+||+=|
T Consensus 94 -~--------~~~~~~~~-------~~-------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 -V--------KRADEVRT-------DR-------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred -c--------chhhhccc-------cC-------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 0 00110000 00 00112234666789999999999999885559999998
No 126
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=59.20 E-value=29 Score=37.47 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002611 532 KATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (900)
Q Consensus 532 kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~ 594 (900)
-|.++|+||+++|.++==+ ..+ +.++..+||+.++++|++|+-.+
T Consensus 76 Yl~~~k~lGf~~IEiS~G~-------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 76 YLNECDELGFEAVEISDGS-------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHcCCCEEEEcCCc-------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 3559999999999987421 222 46889999999999999999553
No 127
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=59.12 E-value=12 Score=42.37 Aligned_cols=136 Identities=12% Similarity=0.158 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcC------C----CCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------S----RYGNIDELKDVVNKFHDVGMKILGDV 594 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~ID------p----~lGt~edfk~LV~~AH~~GIrVILD~ 594 (900)
.+.-|.+-|+.++.+++|.++|--- +.. .+++....|-.+. + .+=|.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~-D~~-~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLS-DDQ-GFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEE-SST-CB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe-cCC-CCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 5788899999999999999998321 110 0111111111110 0 03378999999999999999999998
Q ss_pred -ccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCC
Q 002611 595 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 673 (900)
Q Consensus 595 -V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GI 673 (900)
++.|++.--.. +..+.. ..|.. ....+...+....-..||..+|++.+++.+++...++-+.-
T Consensus 94 d~PGH~~~~l~~----~p~~~~-~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 157 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGC-SAWPE-----------DKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS 157 (351)
T ss_dssp EESSS-HHHHHH----HHHHCC-CHTTC-----------SSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHh----Cchhhc-ccccc-----------ccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC
Confidence 67887642110 000000 00000 00000000000011248889999999999999988866664
Q ss_pred CeEEe
Q 002611 674 DGWRL 678 (900)
Q Consensus 674 DGfRl 678 (900)
.-|-+
T Consensus 158 ~~iHi 162 (351)
T PF00728_consen 158 KYIHI 162 (351)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 44444
No 128
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=58.95 E-value=12 Score=42.59 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 657 RKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 657 r~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
+..+++-|...++.+|+|||=+|.-...
T Consensus 88 ~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 88 SFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred chHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4445555556667889999999987766
No 129
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=57.38 E-value=4.7 Score=37.67 Aligned_cols=103 Identities=6% Similarity=-0.050 Sum_probs=58.8
Q ss_pred chhhcccCcccCCCCcceeEEEe---cCccceeEEEEEeCCccccccCCcceEEeCCCCCCCCCcccccccccCCCcccc
Q 002611 345 NKALRTLLQPKEGGKGCSRLFTV---DEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEAT 421 (900)
Q Consensus 345 ~~a~~Tpf~~~~~~~~~~~~~~l---~~~~~g~~fVl~~~~~~W~k~~g~df~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (900)
+..++ ||++ + .+.|.| ......+.+++..+ + | .+. ...++|...+.+ +....|++ ++...
T Consensus 7 ~~~~~-p~ga----~--~v~irlr~~~~~v~~v~l~~~~~-~-~--~~~-~~~~~M~~~~~~---~~~~~~~~--~i~~~ 69 (116)
T cd02857 7 SEYAY-PYGA----D--TLHIRLRTKKGDVAKVYLRYGDP-Y-D--KGE-EEEVPMRKDGSD---ELFDYWEA--TLPPP 69 (116)
T ss_pred CceeE-EcCC----C--EEEEEEEecCCCccEEEEEEECC-C-C--CCC-ceEEEEEEeeeC---CceeEEEE--EEecC
Confidence 34566 8888 2 466666 44566777666655 2 1 112 247799776664 33345654 55443
Q ss_pred cccccchhhhhHHHHHhhcccCcccchhcc--ccchhhhhhhhHHHH
Q 002611 422 QEVSQTAYTAGIIKEIRNLVSDFSSDISRK--TKSKEAQKSILLEIE 466 (900)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~q~tv~~~~~ 466 (900)
. +..+|+|.++.+-....-+..+-..+. .+...||+|++++..
T Consensus 70 -~-~~~~Y~F~l~~~~~~~~y~~~G~~~~~~~~~~~~Fq~t~~~~~~ 114 (116)
T cd02857 70 -T-GRLRYYFELVDDGETVWYGEEGFSDEPPDTDANYFQFPYIHPAD 114 (116)
T ss_pred -C-cEEEEEEEEEcCCEEEEEeCCccccccccccCCceeeCccCHHH
Confidence 3 899999999743232222222212222 246789999998753
No 130
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=57.22 E-value=18 Score=42.27 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEec
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~~AH~~GIrVILD~V 595 (900)
..+-+.|+|+.|+|+|-++=-+.+- .+. ...+|.+=. ..-+.+.|+.|.++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~------~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QAT------DGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hcc------CCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 4777899999999999874222222 111 114555532 22466779999999999999963
No 131
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=56.95 E-value=37 Score=32.16 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
.-.++..++..|++-|+++|+|..=.....+++.-|. .+.++++|+++- |+.||.
T Consensus 50 pg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-----------~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 50 PGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-----------IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred ChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-----------HHHHHHHHHHHh--CCCEee
Confidence 3567888999999999999999986655554443332 455555555433 998874
No 132
>PLN02635 disproportionating enzyme
Probab=56.30 E-value=17 Score=43.89 Aligned_cols=66 Identities=20% Similarity=0.069 Sum_probs=49.8
Q ss_pred eeeecccccCCCCC-CCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC-----CCCCCCCccCCCcCCCCCCHHHH
Q 002611 510 ILCQGFNWESHKSG-RWYMELK-EKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDEL 576 (900)
Q Consensus 510 i~~~~F~Wd~~~~G-G~l~GI~-~kLdYLk~LGVt~I~L~PIfes~-----s~hGYd~~Dy~~IDp~lGt~edf 576 (900)
|.++-|.--+ ..| |||.... .-+|.+++.|.+.++|+|+++.. .+..|.+.+-+..||.|=+.+.+
T Consensus 32 vll~l~SLps-~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L 104 (538)
T PLN02635 32 ILLHPTSLPG-PYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEEL 104 (538)
T ss_pred EEEccccCCC-CCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhh
Confidence 4554443222 246 9997754 78999999999999999999874 46789999988999888766543
No 133
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=55.27 E-value=9.4 Score=43.74 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
++....+-|.-.+++|++.|+.+=...- +..=...+.|++|++.||++||+||+|+-..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPE--------------DDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCC--------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 6778888888899999999986521100 0011125789999999999999999999664
No 134
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=54.71 E-value=28 Score=43.55 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+++++-+.|+++||.||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999885
No 135
>PRK15447 putative protease; Provisional
Probab=54.68 E-value=40 Score=37.67 Aligned_cols=56 Identities=5% Similarity=0.248 Sum_probs=40.8
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 515 FNWESHKSGRWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 515 F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
|.|- .|++.... ..|++.|+++||+.- .|.... + | +.+++++.|+.||++|.+|.+
T Consensus 10 ~~~p----~~~~~~~~---~~~~~~gaDaVY~g~~~~~~R~-------~-------f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP----KETVRDFY---QRAADSPVDIVYLGETVCSKRR-------E-------L-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC----CCCHHHHH---HHHHcCCCCEEEECCccCCCcc-------C-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 5674 46665554 567889999999973 111111 1 2 779999999999999999988
No 136
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.50 E-value=23 Score=39.81 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCC-EEEeCCCCCCCCCCCCCCccC-CCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 530 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 530 ~~kLdYLk~LGVt-~I~L~PIfes~s~hGYd~~Dy-~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.++|..|++.|++ .|.|-+ ++.+ ..-. ..++-.+ +.+++.+.++.+|++||+|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-----d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-----DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-----HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 7889999999998 688765 2221 1112 1355555 88999999999999999999999996
No 137
>PRK07094 biotin synthase; Provisional
Probab=52.93 E-value=19 Score=40.30 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.+.+..|++.|++.+.+.. + ..+..-|..+.+. .+.++..+.++.||+.||.|..++++.+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--E-----s~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--E-----TADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--c-----cCCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 5778899999999998654 2 2223334455553 678999999999999999999999998644
No 138
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=52.43 E-value=18 Score=48.00 Aligned_cols=67 Identities=21% Similarity=0.120 Sum_probs=52.0
Q ss_pred eeeecccccCC-CCC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CC----CCCCCccCCCcCCCCCCHHHH
Q 002611 510 ILCQGFNWESH-KSG-RWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDEL 576 (900)
Q Consensus 510 i~~~~F~Wd~~-~~G-G~l~GI~~kLdYLk~LGVt~I~L~PIfes~-s~----hGYd~~Dy~~IDp~lGt~edf 576 (900)
+.+|-|.--+. ..| |||..+.+-++.+++.|.+.|+|+|+.... .+ ..|.+.+-+.+||.|=+.+.+
T Consensus 727 v~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 727 ILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred EEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 44454432221 245 999999999999999999999999999866 33 679999999999988776544
No 139
>PLN02950 4-alpha-glucanotransferase
Probab=52.42 E-value=30 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+++++.+.|+++||+||.|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478999999999999999999884
No 140
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=52.13 E-value=27 Score=39.89 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~~ 601 (900)
.++|..|+++||+.|.|.. ...+..-+..+ .+-++.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 100 ~e~l~~l~~~Gv~risiGv-------qS~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-------QSFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 5889999999999998865 22223223344 3567889999999999999995 789999986543
No 141
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=51.76 E-value=36 Score=37.77 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-----CCCCCC--------ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVS-----PEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s-----~hGYd~--------~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVI 591 (900)
+...+..-|+.+|+-|||.|+++=+-+..+ ..|+.+ .|+..++|.| -+.+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~- 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA- 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE-
Confidence 455666779999999999999975544331 123222 2444555333 357888999999999988
Q ss_pred EEeccCc
Q 002611 592 GDVVLNH 598 (900)
Q Consensus 592 LD~V~NH 598 (900)
++|+=|
T Consensus 105 -~lv~~w 110 (289)
T PF13204_consen 105 -ALVPFW 110 (289)
T ss_dssp -EEESS-
T ss_pred -EEEEEE
Confidence 466655
No 142
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=51.76 E-value=24 Score=42.21 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccCcc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHR 599 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GI-rVILD~V~NHt 599 (900)
.++|..|++.||+.|.|.| ...+..-+..+. +-.+.+++.+.++.|++.|+ .|-+|+.+..-
T Consensus 269 ~e~L~~Lk~~Gv~RISIGv-------QS~~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLP 331 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINP-------QTMNDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLP 331 (488)
T ss_pred HHHHHHHHhcCCCeEEEcC-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 6889999999999999988 222322233443 34689999999999999999 78899999643
No 143
>PLN03059 beta-galactosidase; Provisional
Probab=51.07 E-value=24 Score=44.58 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
.-..++|.-+|++|+|+|..==+.... --.+..| .|.+..||.++++.|++.||.|||=.=
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~H---Ep~~G~~-----dF~G~~DL~~Fl~la~e~GLyvilRpG 119 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGH---EPSPGNY-----YFEDRYDLVKFIKVVQAAGLYVHLRIG 119 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccccc---CCCCCee-----eccchHHHHHHHHHHHHcCCEEEecCC
Confidence 345788889999999999752221111 1111111 245688999999999999999999643
No 144
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=50.29 E-value=50 Score=35.08 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCC--ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMP--RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~--~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
-..|.+-.+.|+++|+..+.|+|.+.... +.|.- .+|.--|-..=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~-~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGE-PKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccch-hHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 45566666788888999999999665441 11110 01111121223678999999999999999975
No 145
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=48.28 E-value=1.5e+02 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.077 Sum_probs=29.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCeEEecccccccc----hhHHHHHHhcCCce
Q 002611 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEPYF 700 (900)
Q Consensus 653 np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~----~f~~~~~~~~~p~~ 700 (900)
+++-|+.+++.+..+++++|+||+-||--..... .+++++..+..+.+
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~~~ 144 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGPDF 144 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCCCc
Confidence 4455555666666777799999999997653222 34455444444444
No 146
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=48.00 E-value=27 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.9
Q ss_pred EeecCCEEEEEECC----EEEEEEeCCCC
Q 002611 852 VKAERDVYAAIIDE----KVAMKLGPGHY 876 (900)
Q Consensus 852 l~~~~~v~a~~r~~----~vlVviNn~~~ 876 (900)
-..++.+|||.|.+ .++||+|.+..
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~ 33 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPE 33 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCc
Confidence 34567999999932 58999997765
No 147
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=47.16 E-value=40 Score=37.07 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.+.+..||+.|++.|.+. ++ .+ +.-|..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-----~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-----QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-----HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 678899999999999987 33 22 2223344443 5788999999999999999998888865
No 148
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.99 E-value=2.3e+02 Score=31.22 Aligned_cols=97 Identities=10% Similarity=0.120 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCC
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~ 607 (900)
...+-++...+.|++.|.+. ...++ .+.++..|+.|+++|++|..-+.+-..+
T Consensus 92 ~~~~di~~~~~~g~~~iri~---~~~~~-----------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~------- 144 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIF---DALND-----------------VRNLEVAIKAVKKAGKHVEGAICYTGSP------- 144 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEe---ecCCh-----------------HHHHHHHHHHHHHCCCeEEEEEEecCCC-------
Confidence 35667788889999998762 11111 5789999999999999988644221100
Q ss_pred CCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe-cccccccc
Q 002611 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWG 686 (900)
Q Consensus 608 g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~ 686 (900)
. + + .+++.+.++... +.|+|.+++ |.+..+.+
T Consensus 145 -~---------~---------------------------------~---~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P 177 (275)
T cd07937 145 -V---------H---------------------------------T---LEYYVKLAKELE-DMGADSICIKDMAGLLTP 177 (275)
T ss_pred -C---------C---------------------------------C---HHHHHHHHHHHH-HcCCCEEEEcCCCCCCCH
Confidence 0 0 0 256666777766 899999999 88888887
Q ss_pred hhHHHHHHhcCC
Q 002611 687 GYVKDYLEATEP 698 (900)
Q Consensus 687 ~f~~~~~~~~~p 698 (900)
..+.++++.++.
T Consensus 178 ~~v~~lv~~l~~ 189 (275)
T cd07937 178 YAAYELVKALKK 189 (275)
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 149
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=46.58 E-value=91 Score=38.24 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
..+.|..+|++|+|+|+--=.. + .|--.+.-| .|.+.-||.++|++||+.|+.|+|-+=+
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfW-n--~Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFW-N--LHEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeec-c--cccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 4667788999999999853222 2 122112222 4677889999999999999999997654
No 150
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=46.58 E-value=48 Score=30.43 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=23.7
Q ss_pred EEeecCCEEEEEE---CCEEEEEEeCCCCCCCCCCCCeEEEEcCCC
Q 002611 851 IVKAERDVYAAII---DEKVAMKLGPGHYEPPSGSQNWSFVTEGRD 893 (900)
Q Consensus 851 ~l~~~~~v~a~~r---~~~vlVviNn~~~~~~~g~~~~~~~~~g~~ 893 (900)
+++.+++.+|++| +.+++++++|..... .+.+++.+++.+
T Consensus 1 piy~d~~~~a~rKG~~g~qvi~vltN~Gs~~---~~~~~~~v~~~~ 43 (91)
T PF09260_consen 1 PIYSDDSTIAFRKGPDGSQVIVVLTNQGSNS---GGSYTLTVPNTG 43 (91)
T ss_dssp EEEEETTEEEEEESSTTT-EEEEEE-S-T-T------EEEEESS--
T ss_pred CeEECCcEEEEEeCCCCCEEEEEEeCCCcCC---CCcEEEEEcCCC
Confidence 3678899999999 457888888876643 334667666433
No 151
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=46.40 E-value=34 Score=39.29 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~~ 601 (900)
.++|+.|+++||+.|.|.. ...+..-...++ +-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 108 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGM-------QSAAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 5889999999999999865 122222222333 335788899999999999999 999999986543
No 152
>PRK06256 biotin synthase; Validated
Probab=46.23 E-value=27 Score=39.41 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.+.+..|++.|++.+.+.. ++ + ..-|..+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-----RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-----HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 5778899999999998753 33 2 2224455554 4789999999999999999999999876
No 153
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=46.17 E-value=1.9e+02 Score=33.45 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCcc-ccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHR-CAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt-~~d~ 603 (900)
.+.||+|++++|++|-++++=+ +|. +...
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~~ 111 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRVC 111 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCcc
Confidence 4679999999999999999554 686 6543
No 154
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=45.78 E-value=29 Score=40.71 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE-EEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVI-LD~V~NHt~~ 601 (900)
.++|..|+++||+.|.|.- ...+......+.-.. +.++..+.++.+++.|+.+| +|+.++.-+.
T Consensus 141 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 5889999999999998754 122222222333332 77899999999999999865 9999886553
No 155
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=44.84 E-value=47 Score=36.07 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
+.+-|+++++|||++|.++= |+ ..+ +.++..++|+.|.++|++|+-.+=
T Consensus 86 ~~~yl~~~k~lGf~~IEiSd--------Gt-----i~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISD--------GT-----IDL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE----------SS-----S--------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEecC--------Cc-----eeC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 45668899999999999863 21 122 367899999999999999987764
No 156
>PRK05660 HemN family oxidoreductase; Provisional
Probab=43.54 E-value=40 Score=38.89 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE-EEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrV-ILD~V~NHt~~ 601 (900)
.++|..|+++|||.|.|.. ...+..-+..+. +..+.++..+-++.|++.|++. -+|+.+..-+.
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 4899999999999999876 333333344444 3468888999999999999975 59999986553
No 157
>PRK13561 putative diguanylate cyclase; Provisional
Probab=43.43 E-value=35 Score=42.01 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC---CCC------CCCCccCCCcCCCC-----CCHHHHHHHHHHHHHcCCE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMK 589 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~---s~h------GYd~~Dy~~IDp~l-----Gt~edfk~LV~~AH~~GIr 589 (900)
.+...+...+..|+++||..-. =..+ ++- ..-+.||-+||..| .+..-++.+|+.||..||+
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l----ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~ 606 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL----DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQ 606 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE----ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCc
Confidence 4677889999999999997654 1111 111 12467888888554 3456799999999999999
Q ss_pred EEEEeccCc
Q 002611 590 ILGDVVLNH 598 (900)
Q Consensus 590 VILD~V~NH 598 (900)
||..+|=+.
T Consensus 607 viAegVE~~ 615 (651)
T PRK13561 607 VIAEGVETE 615 (651)
T ss_pred EEEecCCCH
Confidence 999998764
No 158
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.80 E-value=96 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||++++++|+.|-++++ -++|.|...
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~--Ql~h~G~~~ 104 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFA--QLAHAGRQA 104 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhH--HhhCCCcCC
Confidence 56899999999999999875 458887654
No 159
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=41.52 E-value=26 Score=41.24 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHH
Q 002611 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (900)
Q Consensus 506 ~~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~ 585 (900)
.|++|++.+|- -| -..|-||++|-|++|=+==.|- ..-|| ...+.--+.++|+.||.
T Consensus 413 aG~~IyIDDFG-----TG------YSnL~YLq~L~VDaLKIDKsFv--dtlg~----------~~a~~~I~~hII~MAk~ 469 (524)
T COG4943 413 AGHEIYIDDFG-----TG------YSNLHYLQSLPVDALKIDKSFV--DTLGT----------DSASHLIAPHIIEMAKS 469 (524)
T ss_pred cCCeEEEccCc-----Cc------chhHHHHhhCCccceeccHHHH--Hhhcc----------CcccchhHHHHHHHHHH
Confidence 46788887663 12 4678899999887773211110 00111 12233468899999999
Q ss_pred cCCEEEEEecc
Q 002611 586 VGMKILGDVVL 596 (900)
Q Consensus 586 ~GIrVILD~V~ 596 (900)
.||++|..+|=
T Consensus 470 L~L~iVaEGVE 480 (524)
T COG4943 470 LGLKIVAEGVE 480 (524)
T ss_pred cCCcEEeeccc
Confidence 99999999885
No 160
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=41.48 E-value=24 Score=39.22 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec
Q 002611 572 NIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 572 t~edfk~LV~~AH~~GIrVILD~V 595 (900)
+.++++++.+-||++||+|.||+-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 478999999999999999999985
No 161
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.93 E-value=47 Score=38.13 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----------------CCCCCCCccCCCcCCCCCCHHHHHHHHHHHH
Q 002611 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 584 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~-----------------s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH 584 (900)
+||++.-+.-- |+.+||++.++-|.-... +|-++++ -|+.++.+-||
T Consensus 111 YGGT~~lf~~t---l~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v-------------~Die~ia~iAh 174 (426)
T COG2873 111 YGGTYNLFSHT---LKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV-------------LDIEAIAEIAH 174 (426)
T ss_pred cCchHHHHHHH---HHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc-------------cCHHHHHHHHH
Confidence 47775533322 599999999997754211 3333333 35899999999
Q ss_pred HcCCEEEEEeccC
Q 002611 585 DVGMKILGDVVLN 597 (900)
Q Consensus 585 ~~GIrVILD~V~N 597 (900)
++|+-+|+|=.|-
T Consensus 175 ~~gvpliVDNT~a 187 (426)
T COG2873 175 RHGVPLIVDNTFA 187 (426)
T ss_pred HcCCcEEEecCCC
Confidence 9999999996654
No 162
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=40.65 E-value=1.8e+02 Score=33.44 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||+|++++|++|-+|++=+. |.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCC
Confidence 57899999999999999988764 887654
No 163
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=40.62 E-value=24 Score=36.07 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCcccccCC-------eeEEeec----CCEEEEEE-C------------CEEEEEEeCCCCC
Q 002611 827 YRQEIEALLSVRKRNKIHCRSR-------VEIVKAE----RDVYAAII-D------------EKVAMKLGPGHYE 877 (900)
Q Consensus 827 l~~~~k~Li~lRk~~paL~~G~-------~~~l~~~----~~v~a~~r-~------------~~vlVviNn~~~~ 877 (900)
..++|+.|++||+.+|.|+-++ +.++... .+++++.. + +.++|++|-+..+
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~ 117 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEE 117 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCe
Confidence 6899999999999999998654 3333332 36788764 2 2477777765433
No 164
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=40.05 E-value=42 Score=39.73 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~ 600 (900)
.+.|..|+++||+.|.|.. ...+..-...++- -.+.++..+.++.+++.|+. |-+|+.+..-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAINR-IQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 6889999999999999876 2233332334443 36888999999999999997 88999887544
No 165
>TIGR03356 BGL beta-galactosidase.
Probab=39.10 E-value=66 Score=37.81 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCC------CCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR------YGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~------lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
+.-..+-++-||+||++++=++=- +..|-|. -...+-.+++|++|+++||++|+++.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~-------------Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIA-------------WPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccc-------------hhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 566789999999999999876432 2222222 12346688999999999999999985
No 166
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=38.93 E-value=4.4e+02 Score=29.96 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
..++.....++=|+..|..-..+-++...+| +. .+.+-+ .+.|++|++++|++|-++++ -++|.|...
T Consensus 34 ~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 34 RYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 3455555566667888866554443322221 11 122223 35899999999999999998 668877654
No 167
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.47 E-value=1.8e+02 Score=33.25 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||+|++++|++|-+|+ +-++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 5789999999999999988 6678887654
No 168
>PRK10060 RNase II stability modulator; Provisional
Probab=38.29 E-value=24 Score=43.75 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCCccCCCcCCCC--------CCHHHHHHHHHHHHHcCCEEEE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PI---fes~s~hGYd~~Dy~~IDp~l--------Gt~edfk~LV~~AH~~GIrVIL 592 (900)
.+...+.+.+..|+++||..-. -=+ +.+-++-..-+.||-+||..| ....-++.++..||+.||+||.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4677889999999999997543 100 000011122368888998655 2345689999999999999999
Q ss_pred EeccCc
Q 002611 593 DVVLNH 598 (900)
Q Consensus 593 D~V~NH 598 (900)
++|=+.
T Consensus 617 eGVEt~ 622 (663)
T PRK10060 617 EGVETA 622 (663)
T ss_pred ecCCCH
Confidence 999764
No 169
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=38.27 E-value=34 Score=39.02 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCC
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~ 607 (900)
..+=++-+|++|...|-|+--+..+ .-+.=...+|..++.. +.-+-+++|+++|+++||++.+ +-|.. +
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~---Y~S~~-d----- 162 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL---YYSPW-D----- 162 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE---EEESS-S-----
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE---Eecch-H-----
Confidence 3455677899999999987654433 1122223344444422 2357899999999999999998 22221 1
Q ss_pred CCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCC-ChHHHHHHHHHHHHHHHHhCCCeEEecccccccc
Q 002611 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS-QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (900)
Q Consensus 608 g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~-np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l~~ 686 (900)
|....... ...... ...++.... ...+.++...-++.++.+|.+|++=+|....-+.
T Consensus 163 -----------w~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~ 220 (346)
T PF01120_consen 163 -----------WHHPDYPP-----DEEGDE------NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPD 220 (346)
T ss_dssp -----------CCCTTTTS-----SCHCHH------CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCC
T ss_pred -----------hcCcccCC-----CccCCc------ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccc
Confidence 11100000 000000 000000000 1224457777888899999999999999865322
Q ss_pred h-----hHHHHHHhcCCceEEeecccC
Q 002611 687 G-----YVKDYLEATEPYFAVGEYWDS 708 (900)
Q Consensus 687 ~-----f~~~~~~~~~p~~liGEvw~~ 708 (900)
+ -+.+.+++..|..+|..-|..
T Consensus 221 ~~~~~~~~~~~i~~~qp~~ii~~r~~~ 247 (346)
T PF01120_consen 221 EDWDSAELYNWIRKLQPDVIINNRWGG 247 (346)
T ss_dssp THHHHHHHHHHHHHHSTTSEEECCCSS
T ss_pred cccCHHHHHHHHHHhCCeEEEecccCC
Confidence 2 223345566787666554443
No 170
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=38.10 E-value=56 Score=37.21 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~ 600 (900)
.++|..|+++|||.|.|.. ...+..-...+ .+-.+.++..+.++.+++.|+. |-+|+.++.-+
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 6899999999999998754 22222223333 3445788999999999999996 66999997544
No 171
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=37.98 E-value=49 Score=37.87 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~ 600 (900)
.++|+.|+++|++.|.+.- ...+..-...+.- -.+.++..+.++.+++.|+. |-+|+.++.-+
T Consensus 103 ~e~l~~lk~~G~nrisiGv-------QS~~d~vL~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-------QSMNNNILKQLNR-THTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 5889999999999998754 2222222223332 35788999999999999997 99999998654
No 172
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.88 E-value=64 Score=34.98 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
-+.+.++.++++|+++|.|.+... . ....+.++ +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~-~--~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDES-D--ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCc-c--cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 367889999999999999964210 0 00111111 457789999999999999874
No 173
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=37.80 E-value=50 Score=39.03 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~~ 601 (900)
.+.|..|+++|++.|.|.. ...+..-...++. -.+.++..+.++.+++.|++ |-+|+.++.-+.
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 6889999999999999865 2222222233433 36788999999999999996 779998876553
No 174
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=37.70 E-value=1.4e+02 Score=33.40 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCH---HHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNI---DELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~---edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+.+.++..-||+-|+|++-+-== .--++-.|...| .+....++. -|.+-+|++|+++||.+|.-+|.=.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~K-dd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFK--- 148 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVK-DDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFK--- 148 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEec-CCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEee---
Confidence 4455777888999999999864210 000223344443 233333332 3678899999999999999987621
Q ss_pred CCCCCCCCCccC-----CCCCCCCCCCccCCCCCCCCCC--CCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCC
Q 002611 602 HYQNQNGVWNIF-----GGRLNWDDRAVVADDPHFQGRG--NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (900)
Q Consensus 602 d~~~~~g~~~~y-----~g~~~W~~~~~~~~~~~f~~~~--~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GID 674 (900)
|.... .|++| .+-..|. .|...+ .+. ...--++--++.+++|=+.+++.-+ ++|+|
T Consensus 149 D~~l~--~~n~fk~av~~~gKpw~---------~~~ngaLrKe~-----~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfd 211 (400)
T COG1306 149 DTILA--KENPFKIAVYKDGKPWK---------AFTNGALRKES-----DGEHWVDAYDKNLWEYNVTIAKEAA-KFGFD 211 (400)
T ss_pred eeeEE--eecCceEEEEcCCCcch---------hhhcccccccc-----cceeeecccchhhhhhhHHHHHHHH-HcCcc
Confidence 11100 00111 0001222 111100 000 0111145567999999999999988 89999
Q ss_pred eEEecccc
Q 002611 675 GWRLDFVR 682 (900)
Q Consensus 675 GfRlD~a~ 682 (900)
-..+|-..
T Consensus 212 EiQFDYIR 219 (400)
T COG1306 212 EIQFDYIR 219 (400)
T ss_pred ceeeeEEE
Confidence 99999764
No 175
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.42 E-value=2.7e+02 Score=30.48 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCC
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~ 609 (900)
++.|+...+.|++.|-+.= ..-..+..+++|+.|+++|++|.+.+..-+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~--------- 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY--------- 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC---------
Confidence 4566777889999877631 01157889999999999999887665542110
Q ss_pred CccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe-cccccccchh
Q 002611 610 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 688 (900)
Q Consensus 610 ~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f 688 (900)
+ .+++.+.++... +.|+|.+++ |.+..+.++-
T Consensus 136 -------------------------------------------~---~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 136 -------------------------------------------S---DEELLELLELVN-EIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHH
Confidence 0 256666776666 899999998 8888777766
Q ss_pred HHHHHHhc----CCceEEeeccc
Q 002611 689 VKDYLEAT----EPYFAVGEYWD 707 (900)
Q Consensus 689 ~~~~~~~~----~p~~liGEvw~ 707 (900)
+.++++++ .++.-+|=+-+
T Consensus 169 v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 169 IKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred HHHHHHHHHHhcCCCceEEEEeC
Confidence 66665544 33344554433
No 176
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.98 E-value=3.2e+02 Score=30.87 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||+|++++|++|-++++=+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5689999999999999998765 6877653
No 177
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=36.34 E-value=4.2e+02 Score=29.48 Aligned_cols=123 Identities=19% Similarity=0.300 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCC
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~ 605 (900)
++-+-.++..|.+-+++.|-+=|- |...+..=.+.+++|.+. +.|.++|.=+-+........
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~- 90 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRF- 90 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhh-
Confidence 344567778888888888877662 122222334677887654 46777777666644332111
Q ss_pred CCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEecccccc
Q 002611 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (900)
Q Consensus 606 ~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~l 684 (900)
| |+..... ..+.+-+..++ .|.+--.+.+..|+-++-+.+.+..+. +.|+||.-||.++..
T Consensus 91 -------Y-----wd~~w~~-~~p~wLg~edP----~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 91 -------Y-----WDKYWLT-GRPDWLGEEDP----EWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred -------H-----hhhhhhc-CCcccccCCCC----CCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 1 2110000 11111111111 122223477889999999999999998 999999999999865
No 178
>PRK05939 hypothetical protein; Provisional
Probab=35.93 E-value=92 Score=36.19 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHHcCCCEEEeCCCCCCC-----CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 535 ELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 535 YLk~LGVt~I~L~PIfes~-----s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.++.+|+..+++.+. +.. -..+-...=...+....|...+++++++.||++|+.||+|.++-
T Consensus 105 ~l~~~G~~v~~v~~~-d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred HHHhcCCEEEEECCC-CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcc
Confidence 356788888877553 111 00111111112334457888999999999999999999998763
No 179
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.69 E-value=92 Score=29.35 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=38.5
Q ss_pred HHHHHcCCCEEEeCCCCCCCC-CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 534 TELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 534 dYLk~LGVt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
..+..+|+.++.+.+...... -......|..-+=+.=|...+..++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 455778999998866321111 01122233333335668889999999999999999885
No 180
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.53 E-value=3.6e+02 Score=31.08 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||+|++++|++|=++++=+ +|.|...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 4689999999999999988765 7877643
No 181
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=35.22 E-value=30 Score=36.10 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s---~hGYd~~Dy~~IDp~lGt--------~edfk~LV~~AH~~GIrVIL 592 (900)
.+...+.+.+..|+++||.. .|-=+-...+ .-..-+.||-++|+.+-. ..-++.+++.||..|++||.
T Consensus 130 ~~~~~~~~~i~~l~~~G~~i-alddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 130 DDDESAVATLQRLRELGVRI-ALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred cChHHHHHHHHHHHHCCCEE-EEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 34555668889999999874 4432111111 111224678888876532 24699999999999999999
Q ss_pred EeccCcc
Q 002611 593 DVVLNHR 599 (900)
Q Consensus 593 D~V~NHt 599 (900)
++|=+..
T Consensus 209 ~gVe~~~ 215 (241)
T smart00052 209 EGVETPE 215 (241)
T ss_pred ecCCCHH
Confidence 9997754
No 182
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=34.89 E-value=1.5e+02 Score=30.50 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCeEEecccc
Q 002611 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (900)
Q Consensus 652 ~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~ 682 (900)
.++..|+.+++.+..+++++|+||+-+|.-.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 3566778888877778889999999999865
No 183
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.58 E-value=70 Score=37.82 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GI-rVILD~V~NHt~~ 601 (900)
.++|..|+++|++.|.|.. ...+..-...+. +..+.++..+.++.+++.|+ .|-+|+.++.-+.
T Consensus 151 ~e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 5889999999999998765 222222222333 23688899999999999999 8999999886553
No 184
>PTZ00445 p36-lilke protein; Provisional
Probab=34.54 E-value=88 Score=33.36 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCEEEe---CCCCCCCCCCCCCCccCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 002611 528 ELKEKATELSSLGFSVIWL---PPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L---~PIfes~s~hGYd~~Dy~~IDp~lGt--~edfk~LV~~AH~~GIrVIL 592 (900)
.+-.-.+.|++.||.+|-+ +=+.... ..||+-.+ +-+..+++ ..+|+.|++++++.||+|++
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~H-sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITKH-SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhhh-cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 3444457899999999974 1111100 13444332 23333433 35699999999999999975
No 185
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.38 E-value=54 Score=38.20 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcC--CEEEEEec
Q 002611 522 SGRWYMELKEKATELSSLGFSVIWLPPPTES----VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVV 595 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes----~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~G--IrVILD~V 595 (900)
+||+..-+. ..|+..||+..++.+.-.. .-...-...=...+-...|...|++++++.||++| +.||+|-+
T Consensus 111 Yg~t~~l~~---~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 111 YEPTQDFCS---KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred cHHHHHHHH---HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECC
Confidence 345544332 4678899999998763110 00111112212233345677789999999999985 99999998
Q ss_pred cC
Q 002611 596 LN 597 (900)
Q Consensus 596 ~N 597 (900)
+-
T Consensus 188 ~a 189 (395)
T PRK08114 188 WA 189 (395)
T ss_pred Cc
Confidence 73
No 186
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.27 E-value=2.9e+02 Score=31.48 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCC
Q 002611 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 610 (900)
Q Consensus 531 ~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~ 610 (900)
+.|+...+.|++.|-+.= .....+..++.|+.|+++|+.|..-+..-|..
T Consensus 92 ~dl~~a~~~gvd~iri~~--------------------~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~---------- 141 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT--------------------HCTEADVSEQHIGLARELGMDTVGFLMMSHMA---------- 141 (337)
T ss_pred HHHHHHHHcCCCEEEEEE--------------------ecchHHHHHHHHHHHHHCCCeEEEEEEeccCC----------
Confidence 446677788999887531 11113578999999999999987766543221
Q ss_pred ccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe-cccccccchhH
Q 002611 611 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 689 (900)
Q Consensus 611 ~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f~ 689 (900)
. .+++.+.++... ++|+|.+++ |.+..+.++.+
T Consensus 142 ------------------------------------------~---~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 142 ------------------------------------------P---PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred ------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHH
Confidence 0 256777777666 899999997 88887777766
Q ss_pred HHHHHhc----CCceEEeecccC
Q 002611 690 KDYLEAT----EPYFAVGEYWDS 708 (900)
Q Consensus 690 ~~~~~~~----~p~~liGEvw~~ 708 (900)
.++++++ +|+.-+|=+-++
T Consensus 176 ~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 176 RDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCC
Confidence 6655443 455566655444
No 187
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.77 E-value=65 Score=38.22 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+.|+.+++.|++.|.+.. |+.+. .-...++.. -+.++..+.++.+|+.||.|.+++++.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi--ES~s~-----~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY--ESGDQ-----QILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCH-----HHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 5778999999999998654 33321 111223222 267889999999999999999999985
No 188
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.04 E-value=57 Score=32.28 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
.+.++.|+++|+..|+++- ...+...+..+...-++.++..+.++.++++|+.|...+++..-
T Consensus 88 ~~~~~~l~~~g~~~i~i~l-------e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~ 150 (204)
T cd01335 88 EELLKELKELGLDGVGVSL-------DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLG 150 (204)
T ss_pred HHHHHHHHhCCCceEEEEc-------ccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 5677888999999998865 22222223333345667899999999999999999999998643
No 189
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=32.99 E-value=5e+02 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.+.||++++++|++|-++++ =++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 46899999999999999998 567988764
No 190
>PRK01060 endonuclease IV; Provisional
Probab=32.88 E-value=93 Score=33.80 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 002611 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrV 590 (900)
.++.+-|+.++++|+++|.|.+-- .+.+. +..-+.+++++|-+.+.++||+|
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 347788999999999999986521 11111 21237888999999999999995
No 191
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.57 E-value=75 Score=36.47 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~~ 601 (900)
.+.|..|+++|++.|.+.. ...+..-+..+. +-.+.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-------qS~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-------QTFNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 5889999999999998865 222222233333 345788999999999999998 679999986554
No 192
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=32.34 E-value=71 Score=37.18 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~ 600 (900)
.++|..|+++|||.|.|.. .-.+..-...++ +--+.++..+.++.+++.|+. |-+|+.++.-+
T Consensus 115 ~e~l~~l~~~GvnrislGv-------QS~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV-------QAFQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc-------ccCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 5889999999999999865 112222222332 334778889999999999998 88999998654
No 193
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.32 E-value=2.3e+02 Score=30.81 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCeEEe-cccccccchhHHHHHHhcC
Q 002611 658 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEATE 697 (900)
Q Consensus 658 ~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f~~~~~~~~~ 697 (900)
+++.+.++... +.|+|.+++ |.+..+.+.-+.++++.++
T Consensus 141 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 141 EELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 56777777766 899999998 7777777777777666553
No 194
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=32.20 E-value=46 Score=38.59 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
.++++++...|..||.+||+.|-+-= |.|..+...|+- .-.++|.+.+++.|+||..=+-|.-|
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW-------------s~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW-------------SGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 46788999999999999999997632 333334444544 45789999999999999998888777
Q ss_pred cc
Q 002611 600 CA 601 (900)
Q Consensus 600 ~~ 601 (900)
+.
T Consensus 79 Gg 80 (402)
T PF01373_consen 79 GG 80 (402)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 195
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.84 E-value=1.3e+02 Score=30.44 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~ 594 (900)
-||.-..+..+-|+++||.+-- .-.|.|+ |++.+.+++++|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-----~VvSAHR--------------TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-----RVVSAHR--------------TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-----EEEeccC--------------CHHHHHHHHHHHHHCCCeEEEec
Confidence 4677778888889999997532 0113344 89999999999999999999865
No 196
>PLN02803 beta-amylase
Probab=31.82 E-value=1.2e+02 Score=36.45 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccC
Q 002611 527 MELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d 602 (900)
+++...|..||.+||+.|-+-= |.|..+...|+-. -.++|++.+++.|+||..=+-|.-||..
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE-------------GYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 8899999999999999997642 4444455556544 4688999999999999998888777653
No 197
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.06 E-value=1.2e+02 Score=34.46 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----CCCCCCCcc-CCCcCCCCC-------CHHHHHHHHHHHHHcCC
Q 002611 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRD-LYNLSSRYG-------NIDELKDVVNKFHDVGM 588 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~-----s~hGYd~~D-y~~IDp~lG-------t~edfk~LV~~AH~~GI 588 (900)
|.|++.-..+.++-.++.|.++|=+.=..... ..-.|...+ .+.-.+.|. +.+++++|.+.|++.||
T Consensus 12 H~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 12 HNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 67999999999999999999998665321111 001121110 111011111 35788999999999999
Q ss_pred EEEE
Q 002611 589 KILG 592 (900)
Q Consensus 589 rVIL 592 (900)
.++-
T Consensus 92 ~~~s 95 (327)
T TIGR03586 92 TIFS 95 (327)
T ss_pred cEEE
Confidence 8874
No 198
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=30.76 E-value=81 Score=36.26 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~~ 601 (900)
.++|+.|+++|||.|.|.. .-.+..-...+. +--+.++..+.++.|++.|+. |-+|+.+..-+.
T Consensus 103 ~~~l~~l~~~G~nrislGv-------QS~~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGV-------QTFDDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 6889999999999998765 112222222333 233677888899999999996 899999976543
No 199
>PRK05967 cystathionine beta-lyase; Provisional
Probab=30.55 E-value=69 Score=37.28 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 570 YGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 570 lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.++..+++++++.||++|+-||+|-++..
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 68999999999999999999999999853
No 200
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=30.50 E-value=1.3e+02 Score=31.80 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrV 590 (900)
+...+..|+++|++.|=+.|+- | +-..+||+++.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~------G------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG------G------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T------T------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCcee
Confidence 6777899999999999988852 1 235789999999999999987
No 201
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=30.49 E-value=80 Score=38.16 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
.++|+.|+++|+|.|.|..= ..++- -...++ +--+.++..+.++.+++.|++|.+|+.++--+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ------S~~d~-VL~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ------TIYND-ILERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc------cCCHH-HHHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 68899999999999998761 11111 122332 23467888889999999999999999998544
No 202
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=30.42 E-value=2.2e+02 Score=33.98 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ccCcccc
Q 002611 572 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (900)
Q Consensus 572 t~edfk~LV~~AH~~GIrVILD~-V~NHt~~ 601 (900)
|.+|.+++|+-|.-||||||-.+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 67899999999999999999988 6778875
No 203
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.96 E-value=71 Score=30.94 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC---------CCC--CccCCCcCCCCCCHHHHHHHHHHHHH
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPE---------GYM--PRDLYNLSSRYGNIDELKDVVNKFHD 585 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~h---------GYd--~~Dy~~IDp~lGt~edfk~LV~~AH~ 585 (900)
...+.+.|+.|.+.|++.|.+.|.+-.++-| .|. -....--.|-+.+.+|.+++++++++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 3457888999999999999999999887322 011 11112224666678888888887764
No 204
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=28.97 E-value=1e+02 Score=33.85 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 531 ~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
+.+..+.+-.+..|++.++... .| ..=+.+++++|++.||++|+.||+|.++..
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~~~---tG-----------~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPNNP---TG-----------AVLSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCCCC---CC-----------cccCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 4444455556777777663211 11 112568899999999999999999999754
No 205
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.76 E-value=4.3e+02 Score=30.05 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCC
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~ 609 (900)
.+.|+...+.|++.|-+.= .....+..++.|+.|+++|+.|..-+..-|..
T Consensus 90 ~~dl~~a~~~gvd~iri~~--------------------~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~--------- 140 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVAT--------------------HCTEADVSEQHIGMARELGMDTVGFLMMSHMT--------- 140 (333)
T ss_pred HHHHHHHHHCCCCEEEEEe--------------------ccchHHHHHHHHHHHHHcCCeEEEEEEcccCC---------
Confidence 3446777788999887521 11122468899999999999988766554321
Q ss_pred CccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe-cccccccchh
Q 002611 610 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 688 (900)
Q Consensus 610 ~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f 688 (900)
. .+++.+.++... ++|+|.+.+ |.+..+.++-
T Consensus 141 -------------------------------------------~---~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 141 -------------------------------------------P---PEKLAEQAKLME-SYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hcCCCEEEEccCCCCCCHHH
Confidence 0 256777777665 899999998 8888777766
Q ss_pred HHHHHHhc----CCceEEeecccC
Q 002611 689 VKDYLEAT----EPYFAVGEYWDS 708 (900)
Q Consensus 689 ~~~~~~~~----~p~~liGEvw~~ 708 (900)
+.++++++ +|+.-||=+-++
T Consensus 174 v~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 174 VRDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCC
Confidence 66555443 445556544443
No 206
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.20 E-value=1.4e+02 Score=32.35 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVI 591 (900)
-+.+.|+.++++|+++|.|..- ..|-|. +.+ +..++++|.+++.++||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~----~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG----RPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC----Cccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 3789999999999999998420 011111 111 34578899999999999985
No 207
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=28.00 E-value=91 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 534 dYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
-=|+.||+.+..+. .|+..++...-..+.+.++++.|++.|+.|++|....
T Consensus 44 ~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 44 VALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 34677798887777 3444444332224778999999999999999999854
No 208
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=27.88 E-value=1.2e+02 Score=34.92 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CCCCCCCccC-------CCc-------------------CCC--C
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDL-------YNL-------------------SSR--Y 570 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~----s~hGYd~~Dy-------~~I-------------------Dp~--l 570 (900)
.|=-++|.=.++-|+.-|.|.+.--|=|..- .+++-.++=| ..| +|. -
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 4667889999999999999998877766543 2333222211 111 121 2
Q ss_pred C---CHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 571 G---NIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 571 G---t~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
| +.+-|+++.+.||++||-||-|=|+.|+.-
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 3 478999999999999999999999999864
No 209
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=1.6e+02 Score=33.80 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
.++|..+-+-|+++||+.=- +... .++. .+| +.++|++.|+.||++|.++.+=+-
T Consensus 16 l~~l~~ai~~GADaVY~G~~-~~~~-R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEK-EFGL-RRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCc-cccc-cccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEec
Confidence 34445555668999998743 2221 2222 223 567799999999999999886443
No 210
>PLN02389 biotin synthase
Probab=27.78 E-value=1.3e+02 Score=34.95 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.+.+..||+.|++.+.+ .++. + +.-|..+-+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeT-s-----~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDT-S-----REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecC-C-----hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 68899999999999865 2332 1 2224444432 3788889999999999999999999988
No 211
>PF03714 PUD: Bacterial pullanase-associated domain; InterPro: IPR005323 Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2J43_A 2J44_A 2YA1_A 2FHC_A 2FHB_A 2FHF_A 2J73_B 2J72_A 2J71_A.
Probab=27.62 E-value=1e+02 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=28.2
Q ss_pred EEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCc
Q 002611 175 QVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVD 215 (900)
Q Consensus 175 ~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~ 215 (900)
+...+|++......|+|+++.++. |+.++|..|++..
T Consensus 46 G~~~~i~~~~~~~~igfIv~~~~~----kd~~~D~~i~~~~ 82 (103)
T PF03714_consen 46 GAYADIPLKGGASKIGFIVRKGDW----KDQGGDRFIDLTS 82 (103)
T ss_dssp EEEEEEEBSTSSSEEEEEEEETTE----ECSSSEEEEETTT
T ss_pred ceEEEEEeCCCCCEEEEEEEcCCC----CCCCCCEEEEecc
Confidence 345555555666679999999855 7899999999954
No 212
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=27.62 E-value=90 Score=33.90 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC--------CCccCCCcCCCCCC--------HHHHHHHHHHHHHcC
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGY--------MPRDLYNLSSRYGN--------IDELKDVVNKFHDVG 587 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGY--------d~~Dy~~IDp~lGt--------~edfk~LV~~AH~~G 587 (900)
.+...+...+.+|+++||..-- -.-.-|| -+.|+-+||..|-. ..-++.+|+.||+.|
T Consensus 133 ~~~~~~~~~l~~L~~~G~~ial------DDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~ 206 (256)
T COG2200 133 DDLDTALALLRQLRELGVRIAL------DDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLG 206 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeEEE------ECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCC
Confidence 3455677778888888875432 1111233 25667788866532 346999999999999
Q ss_pred CEEEEEeccCc
Q 002611 588 MKILGDVVLNH 598 (900)
Q Consensus 588 IrVILD~V~NH 598 (900)
|+||..+|=+-
T Consensus 207 ~~vvaEGVEt~ 217 (256)
T COG2200 207 LTVVAEGVETE 217 (256)
T ss_pred CEEEEeecCCH
Confidence 99999999753
No 213
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=26.72 E-value=1.1e+02 Score=35.62 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
.++|..|+++|||-|.|.. ...+..-...+. +.-+.++..+.++.|++.++.|-+|++++.-+.
T Consensus 111 ~e~l~~l~~~GvnRiSiGv-------QS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGV-------QSLKEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEEC-------CcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 5899999999999999865 111211122222 445678888889999999999999999987554
No 214
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.34 E-value=1.3e+02 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVI 591 (900)
.+.+.|+.++++|+++|.|.+- ... ..+++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~-~~~----------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVD-ETD----------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-Ccc----------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 4788999999999999999532 100 1122222257889999999999999985
No 215
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.33 E-value=5.7e+02 Score=28.82 Aligned_cols=68 Identities=18% Similarity=0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccccCC
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~d~ 603 (900)
.++.....++=|+..|..-...-++...+ +.+. +.. =.-.+.||+|++++|+.|-++++=+ +|.|...
T Consensus 35 ~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~----~~~-d~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 35 HLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLG----LWN-DEQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHHcCCCcEEEEcceEECCCcCCCCCcee----ecC-HHHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 34444445556788886655443332111 1111 100 0125689999999999999998765 6877643
No 216
>PRK09936 hypothetical protein; Provisional
Probab=26.15 E-value=2e+02 Score=32.05 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHH-HHHHHHHHHHHcCCEEEEEeccC
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~e-dfk~LV~~AH~~GIrVILD~V~N 597 (900)
.....+.+..++++|+++|.+- ..+| -|+.||+.+ -|.+++++|++.||+|++=+-++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 4556788899999999999864 1233 233676654 68999999999999999987765
No 217
>PRK10551 phage resistance protein; Provisional
Probab=25.87 E-value=1.2e+02 Score=36.68 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC--------CccCCCcCCCC----CCH----HHHHHHHHHHHHcCCEEE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRY----GNI----DELKDVVNKFHDVGMKIL 591 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd--------~~Dy~~IDp~l----Gt~----edfk~LV~~AH~~GIrVI 591 (900)
...+.+..|+++||.... .....||. +.||-+||..| ++. .-++.+++.||+.|++||
T Consensus 398 ~~~~~l~~Lr~~G~~ial------DDFGtg~ssl~~L~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vV 471 (518)
T PRK10551 398 EATKLFAWLHSQGIEIAI------DDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTV 471 (518)
T ss_pred HHHHHHHHHHHCCCEEEE------ECCCCCchhHHHHHhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEE
Confidence 356778889999986543 11112222 57888888543 332 368999999999999999
Q ss_pred EEeccCc
Q 002611 592 GDVVLNH 598 (900)
Q Consensus 592 LD~V~NH 598 (900)
.++|=+.
T Consensus 472 AEGVEt~ 478 (518)
T PRK10551 472 AEGVETP 478 (518)
T ss_pred EEeCCcH
Confidence 9999764
No 218
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=25.81 E-value=1.3e+02 Score=30.10 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEEeccCcc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHR 599 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~G-IrVILD~V~NHt 599 (900)
.+.++.|+++|++.|.++.=. ...+-| ..+.+ -++.+++.+.++.+++.| +.|.+.+++++.
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~--~~~~~~-----~~~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQS--GSDEVL-----KAINR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred HHHHHHHHHcCCCeEEEeccc--CCHHHH-----HHhcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 577899999999999886632 111111 11222 245699999999999999 899888888754
No 219
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.63 E-value=1.8e+02 Score=31.29 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCEEEeCC
Q 002611 529 LKEKATELSSLGFSVIWLPP 548 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~P 548 (900)
+.+.|+.++++|++.|.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 56778888999999999854
No 220
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.40 E-value=59 Score=33.88 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---CCCCCCccCCCcCCCC--------CCHHHHHHHHHHHHHcCCEEEEE
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILGD 593 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s---~hGYd~~Dy~~IDp~l--------Gt~edfk~LV~~AH~~GIrVILD 593 (900)
+...+.+.+..|+++|+... |-=+-.... .-..-..||-++|..+ ....-++.++..||..|++||+.
T Consensus 130 ~~~~~~~~~~~l~~~G~~l~-ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 130 DLEEALATLRRLRALGVRIA-LDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHHHHHHHHHCCCeEE-EeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 45568888999999999743 311110000 0112235677777554 33557999999999999999999
Q ss_pred eccCcc
Q 002611 594 VVLNHR 599 (900)
Q Consensus 594 ~V~NHt 599 (900)
.|=|..
T Consensus 209 gVe~~~ 214 (240)
T cd01948 209 GVETEE 214 (240)
T ss_pred ecCCHH
Confidence 998754
No 221
>PRK09776 putative diguanylate cyclase; Provisional
Probab=25.15 E-value=82 Score=41.08 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC--------CccCCCcCCCCC--------CHHHHHHHHHHHHHcC
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRYG--------NIDELKDVVNKFHDVG 587 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd--------~~Dy~~IDp~lG--------t~edfk~LV~~AH~~G 587 (900)
.+...+.+.+..|+++||..-. - ....||. +.||-+||..|= ...-++.+++.||+.|
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~~l-d-----dfg~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1044 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRVVL-S-----DFGRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLG 1044 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEEEE-c-----CCCCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcC
Confidence 4577888899999999996542 1 1112333 688889996652 2345889999999999
Q ss_pred CEEEEEeccCcc
Q 002611 588 MKILGDVVLNHR 599 (900)
Q Consensus 588 IrVILD~V~NHt 599 (900)
|+||..+|=+..
T Consensus 1045 ~~~iaegVEt~~ 1056 (1092)
T PRK09776 1045 MKTIAGPVELPL 1056 (1092)
T ss_pred CcEEecccCCHH
Confidence 999999986643
No 222
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.85 E-value=83 Score=38.79 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---CCCCCCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPT---ESVSPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIf---es~s~hGYd~~Dy~~IDp~lGt--------~edfk~LV~~AH~~GIrVIL 592 (900)
.++..+...+..|+++||.... -=+- .+..+-..-+.||-+||+.|-. ..-++.+++.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 4577888889999999987553 1100 0001122336788888876532 23489999999999999999
Q ss_pred EeccCcc
Q 002611 593 DVVLNHR 599 (900)
Q Consensus 593 D~V~NHt 599 (900)
.+|=+.-
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9997654
No 223
>PRK12928 lipoyl synthase; Provisional
Probab=24.68 E-value=2.6e+02 Score=31.17 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
|=+...+.+.|+.|+++|++.|.+.+...... ..+-+ .+|=++++|+++-+.|.+.|.+-|.-+.+=
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~-~~~~v-------~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSL-AHLPV-------QRYWTPEEFEALGQIARELGFSHVRSGPLV 281 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCc-cCCce-------eeccCHHHHHHHHHHHHHcCCceeEecCcc
Confidence 56899999999999999999998877443222 22222 256688999999999999998777665553
No 224
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.55 E-value=1.2e+02 Score=35.06 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 531 ~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
++|..|+++|||.|.|-- ++ .+..-...++ +--+.++..+.++.|++.++.|-+|+.++--+
T Consensus 105 e~L~~l~~~GvnrislGv--QS-----~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg 166 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV--QA-----LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPG 166 (380)
T ss_pred HHHHHHHHcCCCEEEEec--cc-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCC
Confidence 899999999999999754 11 1111112222 33477888889999999999999999997544
No 225
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.51 E-value=1.7e+02 Score=32.95 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 596 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~ 596 (900)
.+.++.|++.|++.|.++- ++.++.-|..+-..-|+.++..+-+++|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4678999999999998775 4444444445543446888999999999999997 8777665
No 226
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.34 E-value=1.2e+02 Score=34.71 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccCccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr-VILD~V~NHt~ 600 (900)
.+.|..|+++|++.|.|.- ++.+ ..-...++ +-.+.++..+-++.+++.|+. |-+|+.++.-+
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~-----d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQ-----NSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCC-----HHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 5789999999999998765 2221 11122232 334788999999999999997 77999987544
No 227
>PLN02801 beta-amylase
Probab=24.22 E-value=2.1e+02 Score=34.30 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+++...|..||.+||+.|-+-= |.|..+...|+-. -.++|++.+++.|+||..=+-|.-||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS-------------AYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999997642 4444455556544 468899999999999999888877765
Q ss_pred C
Q 002611 602 H 602 (900)
Q Consensus 602 d 602 (900)
.
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 3
No 228
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.59 E-value=1.7e+02 Score=31.46 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.+..+-++.+++.|+++|.+. |-.+=..++.+++++.||++||++++=+-++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356677888899999999873 1011123578899999999999999966654
No 229
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=23.56 E-value=3.6e+02 Score=30.45 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEEeccCccccCC
Q 002611 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV--GMKILGDVVLNHRCAHY 603 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~--GIrVILD~V~NHt~~d~ 603 (900)
+..+.+.+..+.++||++|-|-|+-+.....|=. + +....-..+-|+++++. .|-||-|+.+-....+.
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~-----A----~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hG 130 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGSD-----T----WDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHG 130 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc-----c----cCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCC
Confidence 6789999999999999999999994322111111 1 11112245555556555 89999999986433211
Q ss_pred CCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEeccccc
Q 002611 604 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 683 (900)
Q Consensus 604 ~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRlD~a~~ 683 (900)
+ |+.-. +=.-.|.+..+.+.+...-.. +.|+|-. +...
T Consensus 131 -----H-------------------------------cGil~--~g~i~ND~Tl~~L~~~Als~A-~AGADiV---APSd 168 (322)
T PRK13384 131 -----H-------------------------------CGVLH--NDEVDNDATVENLVKQSVTAA-KAGADML---APSA 168 (322)
T ss_pred -----c-------------------------------eeecc--CCcCccHHHHHHHHHHHHHHH-HcCCCeE---eccc
Confidence 1 00000 001346777788888777777 7888754 3345
Q ss_pred ccchhHHHHHHhc
Q 002611 684 FWGGYVKDYLEAT 696 (900)
Q Consensus 684 l~~~f~~~~~~~~ 696 (900)
+.+.-+..+.+++
T Consensus 169 MMDGrV~aIR~aL 181 (322)
T PRK13384 169 MMDGQVKAIRQGL 181 (322)
T ss_pred ccccHHHHHHHHH
Confidence 5666666655554
No 230
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=23.53 E-value=63 Score=40.46 Aligned_cols=75 Identities=9% Similarity=0.120 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCC---CCCCCCCccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~PIfes~---s~hGYd~~Dy~~IDp~lGt--------~edfk~LV~~AH~~GIrVIL 592 (900)
-++..+...|..|+++||..-. -=+-... ..-.--+.||-+||..|-. ..-++.++.-||+.||+||.
T Consensus 675 ~~~~~~~~~l~~l~~~G~~i~l-d~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGVGLSV-DDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 3578889999999999997543 1111110 1111224788899987632 23589999999999999999
Q ss_pred EeccCcc
Q 002611 593 DVVLNHR 599 (900)
Q Consensus 593 D~V~NHt 599 (900)
++|=+.-
T Consensus 754 ~gVe~~~ 760 (799)
T PRK11359 754 EGVETKE 760 (799)
T ss_pred EcCCCHH
Confidence 9998754
No 231
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=23.34 E-value=71 Score=37.31 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHHcCCCEEEeCCCCCCCC----------CCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 534 TELSSLGFSVIWLPPPTESVS----------PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 534 dYLk~LGVt~I~L~PIfes~s----------~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
..-++.|+...++..- +... +.+=...-+..+-...|+..+++++++.||++|..|++|.+
T Consensus 130 ~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 130 ELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 3344569988887653 3221 01111222344556789999999999999999999999997
No 232
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.33 E-value=1.8e+02 Score=32.71 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEecc
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVL 596 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GI-rVILD~V~ 596 (900)
+.+.++.|++.|++.|.++- ++.+..-|..+... ++.+.+.+-++.|.+.|+ .|.+-.|+
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 34678899999999998765 44444445555544 778899999999999999 77777665
No 233
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.26 E-value=2.9e+02 Score=30.99 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
|=+.+.+++-|+.|+++|++.|-+.+-+.... ..+.+. +|=++++|+.+-+.|-+.|.+-+.-+.+
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p~~-~~~~v~-------~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSR-RHLPVK-------RYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCCCC-CCCccc-------cCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 56889999999999999999999888665433 333444 4457899999999999999876655544
No 234
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=23.18 E-value=2.2e+02 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=22.7
Q ss_pred EEEEEE--CCEEEEEEeCCCCCCC-CCCCCeEEEEcC--CCeEEEE
Q 002611 858 VYAAII--DEKVAMKLGPGHYEPP-SGSQNWSFVTEG--RDYKVWE 898 (900)
Q Consensus 858 v~a~~r--~~~vlVviNn~~~~~~-~g~~~~~~~~~g--~~~~vw~ 898 (900)
+.+-.+ ..+++++++..-..|. ..++.|..+++. ...+|||
T Consensus 6 Lv~t~~Gs~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 6 LVATTSGSNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp EEEEEE-SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred eEEEEeccccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 344444 5678888887655553 335679998887 7899997
No 235
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.06 E-value=1.6e+02 Score=31.66 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
|+..-++.+++.|++.|-+.-. ..|+++.+++.|+++||+.++=+.++-
T Consensus 92 G~~~fi~~~~~aG~~giiipDl----------------------~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL----------------------PPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC----------------------CHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4667788888889988877521 125899999999999999998777654
No 236
>PLN00197 beta-amylase; Provisional
Probab=23.02 E-value=2.3e+02 Score=34.37 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+-+++...|..||.+||+.|-+-= |.|..+...|+-. -.++|++.+.+.|+||..=+-|.-||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs-------------gY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG-------------GYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 456799999999999999997642 4444455556544 468899999999999999888877765
No 237
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.88 E-value=2.2e+02 Score=30.40 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCCEEEeC
Q 002611 529 LKEKATELSSLGFSVIWLP 547 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~ 547 (900)
+.+.++-++++|++.|.|.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 4555666667777777764
No 238
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.72 E-value=1.3e+02 Score=35.60 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHcCCCEEEeC-CCCCCC-----CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 534 TELSSLGFSVIWLP-PPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 534 dYLk~LGVt~I~L~-PIfes~-----s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
..++.+|+...++- |. +.. -..+....-...+-...|...+++++++.||++|+.||+|.++-+
T Consensus 127 ~~l~~~Gi~v~~vd~~~-d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~ 196 (437)
T PRK05613 127 VTLNRLGIEVTFVENPD-DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIAT 196 (437)
T ss_pred HHHHhcCeEEEEECCCC-CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcc
Confidence 35688999999985 42 100 011111110111112235668999999999999999999999643
No 239
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.43 E-value=3.5e+02 Score=29.52 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEe-cccccccchhHHHHHHhc
Q 002611 658 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 696 (900)
Q Consensus 658 ~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f~~~~~~~~ 696 (900)
+++.+.++... ++|+|.+++ |.+..+.+.-+.++++.+
T Consensus 143 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 143 DFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 56777777776 899999999 777777776666665544
No 240
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.24 E-value=69 Score=34.20 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCC-CCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRY-GNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~l-Gt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
........++|.+.|=++.-+..... ..+ --.+++++++++||+.||+||+...+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~------------~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS------------GNEDEVIEEIAAVVEECHKYGLKVILEPYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT------------THHHHHHHHHHHHHHHHHTSEEEEEEEECECH
T ss_pred HHHHHHHHHcCCceeeeecccccccc------------ccHHHHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 67788889999999987663311100 000 0246899999999999999999977753
No 241
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.16 E-value=2.1e+02 Score=31.32 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
|+..-+..+++.|++.|.+... ..++..+++++|+++||..++=+.++.
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 6677788888899988876521 237789999999999999986665553
No 242
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.06 E-value=2.3e+02 Score=28.57 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 534 dYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
..|..+|+++.++...... .-...|-.-+=+.-|...+..++++.||++|++||+
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 4578899999988654311 112233323335568889999999999999999975
No 243
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=22.04 E-value=1.7e+02 Score=32.89 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=26.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 002611 566 LSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (900)
Q Consensus 566 IDp~lGt~edfk~LV~~AH~~GIrVILD~V 595 (900)
+...-|...+++++++.||++|+.||+|.+
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEch
Confidence 345567888899999999999999999998
No 244
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=22.02 E-value=1.4e+02 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.7
Q ss_pred ecCCEEEEEE--CC-EEEEEEeCCC
Q 002611 854 AERDVYAAII--DE-KVAMKLGPGH 875 (900)
Q Consensus 854 ~~~~v~a~~r--~~-~vlVviNn~~ 875 (900)
..+++|+|.| ++ .++|++|+..
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n~ 31 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKND 31 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-SS
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCCC
Confidence 4678999988 44 5555565543
No 245
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=22.02 E-value=1.9e+02 Score=32.93 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
++..+.+.+. + .+.+|.+.|++... |..+ -+.+.+++|++.|+++|+-||.|-|....
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~---G~~~----------~~~~~l~~l~~l~~~~g~~lI~DEv~~g~ 221 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG---GIRP----------APDEFLKGLRQLCDENGLLLIFDEVQCGM 221 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC---CCcC----------CCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 5555555443 2 57799999975322 2111 13578999999999999999999998643
No 246
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.94 E-value=2.1e+02 Score=30.21 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEE-----EeCCCCCCC-----------CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHH
Q 002611 522 SGRWYMELKEKATELSSLGFSVI-----WLPPPTESV-----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (900)
Q Consensus 522 ~GG~l~GI~~kLdYLk~LGVt~I-----~L~PIfes~-----------s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~ 585 (900)
.|-+|..+++.+.....-|+++= |-+||+... +.||+-+.|. .+|+-..|-.+|++
T Consensus 75 ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k 146 (268)
T KOG4175|consen 75 NGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARK 146 (268)
T ss_pred cCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHh
Confidence 47789999999999999999973 336887765 4467666653 46778889999999
Q ss_pred cCCEEEEEeccCcc
Q 002611 586 VGMKILGDVVLNHR 599 (900)
Q Consensus 586 ~GIrVILD~V~NHt 599 (900)
+||.+|.=+.+..+
T Consensus 147 ~gislvpLvaPsTt 160 (268)
T KOG4175|consen 147 HGISLVPLVAPSTT 160 (268)
T ss_pred cCceEEEeeCCCCh
Confidence 99999987666543
No 247
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.91 E-value=3.8e+02 Score=28.33 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCC-CCCCCCCCCCCCccCCCcCCCCCC-----HHHHHHHHHHHHHcCCEEEEEeccCcc
Q 002611 526 YMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGN-----IDELKDVVNKFHDVGMKILGDVVLNHR 599 (900)
Q Consensus 526 l~GI~~kLdYLk~LGVt~I~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt-----~edfk~LV~~AH~~GIrVILD~V~NHt 599 (900)
...+..-+.-+++.|++.|.+.= +.+ ..+.-.++. .+.++++|+.|+++|+.|-+ .+-+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~------------~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~--~~~~~ 131 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSD------------LHIRKNLNKSREEALERIEEAVKYAKELGYEVAF--GCEDA 131 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSH------------HHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE--EETTT
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccH------------HHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe--Ccccc
Confidence 44555557777889999887631 111 011112222 56788999999999999921 11111
Q ss_pred ccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHhCCCeEEe-
Q 002611 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL- 678 (900)
Q Consensus 600 ~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~np~Vr~~i~~vl~~W~~e~GIDGfRl- 678 (900)
+. + + .+++.+.++... ++|+|.+++
T Consensus 132 ~~-------------------------------------------------~-~---~~~~~~~~~~~~-~~g~~~i~l~ 157 (237)
T PF00682_consen 132 SR-------------------------------------------------T-D---PEELLELAEALA-EAGADIIYLA 157 (237)
T ss_dssp GG-------------------------------------------------S-S---HHHHHHHHHHHH-HHT-SEEEEE
T ss_pred cc-------------------------------------------------c-c---HHHHHHHHHHHH-HcCCeEEEee
Confidence 10 0 0 256777777776 889999998
Q ss_pred cccccccchhHHHHHHhc
Q 002611 679 DFVRGFWGGYVKDYLEAT 696 (900)
Q Consensus 679 D~a~~l~~~f~~~~~~~~ 696 (900)
|.+..+.+..+.++++.+
T Consensus 158 Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 158 DTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp ETTS-S-HHHHHHHHHHH
T ss_pred CccCCcCHHHHHHHHHHH
Confidence 777777777666665544
No 248
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=21.91 E-value=1.3e+02 Score=34.82 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 530 ~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
.++|..|+++|||.|.|-- ++ .+..-+..++. --+.++..+.|+.+++.+..|-+|++++.-+.
T Consensus 122 ~e~L~~l~~~GvnrisiGv--QS-----~~~~~L~~l~R-~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGI--QS-----FNDAHLKALGR-IHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHHcCCCeEEEec--cc-----CCHHHHHHhCC-CCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 4899999999999999754 11 11222222322 23567788889999999999999999986543
No 249
>PLN02651 cysteine desulfurase
Probab=21.91 E-value=1.8e+02 Score=32.96 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=27.9
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 565 NLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 565 ~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
.+...-|...+++++++.||++|+.+++|.+-
T Consensus 146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred CCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 44556788889999999999999999999985
No 250
>PLN02905 beta-amylase
Probab=21.85 E-value=2.4e+02 Score=34.71 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCccc
Q 002611 524 RWYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (900)
Q Consensus 524 G~l~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~ 600 (900)
-+.+++...|..||.+||+.|-+-= |.|..+...|+-. -.++|++.+++.|+||..=+-|.-||
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs-------------gY~~L~~mvr~~GLKlqvVMSFHqCG 349 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN-------------GYKRLFQMVRELKLKLQVVMSFHECG 349 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccC
Confidence 3678899999999999999997642 3444454555544 46889999999999999988887776
Q ss_pred cC
Q 002611 601 AH 602 (900)
Q Consensus 601 ~d 602 (900)
..
T Consensus 350 GN 351 (702)
T PLN02905 350 GN 351 (702)
T ss_pred CC
Confidence 53
No 251
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=21.69 E-value=1.7e+02 Score=33.63 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEeCCCCCCC----------CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 002611 529 LKEKATELSSLGFSVIWLPPPTESV----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 529 I~~kLdYLk~LGVt~I~L~PIfes~----------s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
+..-+.+++..|+..+++..- +.. -..+....-...+....|...+++++++.||++|+.|++|.+-
T Consensus 105 ~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 105 VLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 333344566678877776431 111 0011111212344455788889999999999999999999985
No 252
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.62 E-value=2.1e+02 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
.++-...++.++.+.+.|+++|.+.|..... +..++++|.+.||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~----------------------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPDS----------------------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTTT----------------------THHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHHH----------------------HHHHHHHHhhcCceEEE
Confidence 5678889999999999999999999864322 56788999999999998
No 253
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.42 E-value=2.3e+02 Score=30.54 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
++...++++.++|++.|.|...-. +.|. +..-+.++.++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~----~~~~--------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNP----RSWK--------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCC----CCCC--------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 466889999999999999954322 1111 1134567788888888899999764
No 254
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.18 E-value=1.8e+02 Score=31.09 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCE
Q 002611 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (900)
Q Consensus 528 GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIr 589 (900)
-+...+..|+++|.+.|=..|+- | +-..+||+++.++|-++|+.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~------G------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMG------G------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCCc
Confidence 46777899999999999988862 1 22356677777777776664
No 255
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.14 E-value=3.1e+02 Score=30.56 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 002611 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (900)
Q Consensus 573 ~edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~ 652 (900)
.+++.+-|..|+++||+|.--+.++- ++
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GL-------------------Pg--------------------------------- 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGL-------------------PG--------------------------------- 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCC-------------------CC---------------------------------
Confidence 35688899999999999986555431 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCeEEeccc
Q 002611 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (900)
Q Consensus 653 np~Vr~~i~~vl~~W~~e~GIDGfRlD~a 681 (900)
+-++.+.+.++... +.||||..+---
T Consensus 195 --E~~~~mleTak~v~-~~~v~GIKlH~L 220 (312)
T COG1242 195 --ETRDEMLETAKIVA-ELGVDGIKLHPL 220 (312)
T ss_pred --CCHHHHHHHHHHHH-hcCCceEEEEEE
Confidence 11677888888766 999999998654
No 256
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=20.83 E-value=1.5e+02 Score=32.83 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 570 YGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 570 lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
.|..++++++++.||++|+.|++|.+...
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 46667799999999999999999999653
No 257
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.69 E-value=4e+02 Score=29.62 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccCccccCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q 002611 574 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQ 653 (900)
Q Consensus 574 edfk~LV~~AH~~GIrVILD~V~NHt~~d~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLN~~n 653 (900)
+.+++.|+.|+++|++|..-+.+-..+ ++.++ .+
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~-----------~~~~~-----------------------------------~~ 153 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGC-----------PYEGE-----------------------------------VP 153 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecC-----------CCCCC-----------------------------------CC
Confidence 468999999999999998766653111 11110 01
Q ss_pred hHHHHHHHHHHHHHHHHhCCCeEEe-cccccccchhHHHHHHhc
Q 002611 654 DFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 696 (900)
Q Consensus 654 p~Vr~~i~~vl~~W~~e~GIDGfRl-D~a~~l~~~f~~~~~~~~ 696 (900)
-+++.+.++... +.|+|.++| |.+....+.-+.++++.+
T Consensus 154 ---~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 154 ---PEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred ---HHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHH
Confidence 356777788777 899999998 887777666556655544
No 258
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.66 E-value=1.9e+02 Score=27.08 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=37.1
Q ss_pred HHHHHHHHcC-CCEEEeCCCCCCC-CCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 531 EKATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 531 ~kLdYLk~LG-Vt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
.--.+|..+| +.+....+ .+.. ....-...|..-+=+.=|...+..+.++.|+++|.+||.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 16 VAKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 3344667776 77766552 2211 111122333333335568888999999999999999874
No 259
>PLN02161 beta-amylase
Probab=20.63 E-value=2.8e+02 Score=33.35 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCcccc
Q 002611 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (900)
Q Consensus 525 ~l~GI~~kLdYLk~LGVt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NHt~~ 601 (900)
+.+.+...|..||.+||+.|-+-= |.|..+...|+-. -.++|++.+++.|+||..=+-|.-++.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS-------------LYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 577899999999999999997642 4444455556544 468899999999999999888876654
No 260
>PTZ00413 lipoate synthase; Provisional
Probab=20.46 E-value=3.1e+02 Score=31.93 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 523 GG~l~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
|=+...+++-+..|+++||+.+=|.=.. .++.+.+-+. +|=++++|+.+-+.|-+.|.+-+.-+.+=
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL-~Ps~~h~~V~-------~yv~P~~F~~~~~~a~~~Gf~~v~sgPlV 372 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYL-QPTKTRLKVS-------RYAHPKEFEMWEEEAMKMGFLYCASGPLV 372 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeecccc-CCCcccCCce-------eccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 5689999999999999999988552211 1122233333 45688999999999999998877666553
No 261
>PRK09028 cystathionine beta-lyase; Provisional
Probab=20.32 E-value=1.2e+02 Score=35.31 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccC
Q 002611 570 YGNIDELKDVVNKFHDVGMKILGDVVLN 597 (900)
Q Consensus 570 lGt~edfk~LV~~AH~~GIrVILD~V~N 597 (900)
.|...+++++++.||++|+.||+|-++-
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4888999999999999999999999885
No 262
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=20.22 E-value=31 Score=37.25 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred eEEEEE-cCCCCCe-------EEEeeeecCCCCCcccCCCCCCCCcce-eechhhcc
Q 002611 303 TLLNLE-TDLTGDV-------VVHWGVCRDDSKNWEIPAEPYPPETIV-FKNKALRT 350 (900)
Q Consensus 303 ~~v~~~-td~~~~~-------vlHWgv~~~~~~~W~~pp~~~~p~~~~-~~~~a~~T 350 (900)
+.+.++ ++.|+++ .|||+||+ +-+=..|-++..|.... -++-|+|+
T Consensus 93 isgqLdLs~~~e~I~~PildGLLHWaVcp--sa~A~Dpfp~~~~~~~lSPqrlaLEa 147 (257)
T PF12031_consen 93 ISGQLDLSDYPESIARPILDGLLHWAVCP--SAEAQDPFPTAGPHSPLSPQRLALEA 147 (257)
T ss_pred eeeeeecccCchHHHHHHHHHHHHHHhcc--chhccCCCCCCCCCCCCCHHHHHHHH
No 263
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.10 E-value=1.4e+02 Score=37.09 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCccCCCcCCCCCC----HHHHHHHHHHHHHcCCEEEEEecc
Q 002611 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN----IDELKDVVNKFHDVGMKILGDVVL 596 (900)
Q Consensus 527 ~GI~~kLdYLk~LGVt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt----~edfk~LV~~AH~~GIrVILD~V~ 596 (900)
..+.+.|.-.|.+|+|++-+..+.-+. +.|.-|. .-|.. +++.|++.|++|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~------------~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNL------------HEPEEGKFDFTWLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeec------------cCccccccCcccchHH-HHHHHHhcCceEEEecCC
Confidence 578899999999999999987765433 2222221 22344 899999999999997655
No 264
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=20.07 E-value=2.5e+02 Score=31.97 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=60.3
Q ss_pred CceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-CCC-------------------CCCCCC------C
Q 002611 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPT-ESV-------------------SPEGYM------P 560 (900)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GG~l~GI~~kLdYLk~LGVt~I~L~PIf-es~-------------------s~hGYd------~ 560 (900)
+.+|.+|+.+ +...-|..+..+.+..|.+.|++.|=+.=.- ++. .+++|. .
T Consensus 19 daPI~VQSMT---nT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g 95 (361)
T COG0821 19 DAPIVVQSMT---NTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG 95 (361)
T ss_pred CCceEEEecc---CCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC
Confidence 4568888875 2245789999999999999999999885322 111 222211 1
Q ss_pred ccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 002611 561 RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILG 592 (900)
Q Consensus 561 ~Dy~~IDp-~lGt~edfk~LV~~AH~~GIrVIL 592 (900)
.|=+.|+| .+|..+.|+++|++|.++|+-|=+
T Consensus 96 ~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 96 VDKVRINPGNIGFKDRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred cceEEECCcccCcHHHHHHHHHHHHHcCCCEEE
Confidence 45577887 589999999999999999987654
No 265
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=20.02 E-value=1.6e+02 Score=35.26 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHHHHHHHHH-HcCCCEEEeCCCCCCC--CC-----CCCCCccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccCc
Q 002611 527 MELKEKATELS-SLGFSVIWLPPPTESV--SP-----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (900)
Q Consensus 527 ~GI~~kLdYLk-~LGVt~I~L~PIfes~--s~-----hGYd~~Dy~~IDp~lGt~edfk~LV~~AH~~GIrVILD~V~NH 598 (900)
..+...|.+++ ++||..|=+-=||... -. .|-.+.|| .-+.++++.+.++||+.++.+-|-=
T Consensus 39 ~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf----------~~lD~i~D~l~~~g~~P~vel~f~p 108 (486)
T PF01229_consen 39 ADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF----------TYLDQILDFLLENGLKPFVELGFMP 108 (486)
T ss_dssp HHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE------------HHHHHHHHHHHHCT-EEEEEE-SB-
T ss_pred HHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh----------HHHHHHHHHHHHcCCEEEEEEEech
Confidence 55778888887 5999999999888432 10 11111233 3466888999999999999998743
Done!