Query 002612
Match_columns 900
No_of_seqs 139 out of 206
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 1E-107 3E-112 932.1 53.1 778 2-899 145-972 (982)
2 PF10474 DUF2451: Protein of u 98.5 6.8E-06 1.5E-10 87.4 18.5 202 664-883 11-220 (234)
3 PF04437 RINT1_TIP1: RINT-1 / 97.9 0.0011 2.4E-08 78.7 22.1 337 451-856 97-451 (494)
4 PF04091 Sec15: Exocyst comple 95.0 0.24 5.3E-06 55.3 12.4 140 739-879 162-306 (311)
5 PF06046 Sec6: Exocyst complex 86.7 56 0.0012 39.6 21.0 166 703-877 351-526 (566)
6 PF07553 Lipoprotein_Ltp: Host 60.0 28 0.0006 27.8 5.5 40 838-877 5-45 (48)
7 KOG3691 Exocyst complex subuni 48.9 57 0.0012 40.7 8.2 281 530-829 570-890 (982)
8 KOG2115 Vacuolar sorting prote 48.2 1.1E+02 0.0024 38.5 10.5 121 5-215 341-461 (951)
9 PF07393 Sec10: Exocyst comple 47.5 6.2E+02 0.013 31.7 17.6 133 741-879 559-698 (710)
10 PF10475 DUF2450: Protein of u 47.5 49 0.0011 36.6 7.1 59 4-64 132-190 (291)
11 KOG2180 Late Golgi protein sor 46.2 6.8E+02 0.015 31.2 26.4 214 655-880 492-719 (793)
12 PF06248 Zw10: Centromere/kine 42.6 58 0.0013 39.9 7.3 67 4-70 113-182 (593)
13 PF09693 Phage_XkdX: Phage unc 34.0 64 0.0014 24.7 3.6 36 840-877 1-36 (40)
14 KOG2286 Exocyst complex subuni 33.2 7.2E+02 0.016 31.0 14.2 157 707-878 467-630 (667)
15 PF12854 PPR_1: PPR repeat 30.9 63 0.0014 23.4 3.1 21 178-198 11-31 (34)
16 TIGR01669 phage_XkdX phage unc 30.1 94 0.002 24.5 4.1 37 839-877 5-41 (45)
17 PF11989 Dsl1_C: Retrograde tr 28.2 3.5E+02 0.0076 30.1 9.7 169 723-894 109-282 (291)
18 PF15469 Sec5: Exocyst complex 26.9 1.3E+02 0.0028 30.7 5.8 48 1-49 88-135 (182)
19 cd05134 RasGAP_RASA3 RASA3 (or 26.2 2.4E+02 0.0052 31.7 8.0 43 476-518 75-117 (310)
20 PF00981 Rota_NS53: Rotavirus 21.6 2E+02 0.0044 33.3 6.3 68 447-518 335-402 (488)
21 TIGR02606 antidote_CC2985 puta 21.6 64 0.0014 27.7 2.0 32 2-33 6-41 (69)
22 PHA02503 putative transcriptio 21.3 72 0.0016 25.4 1.9 21 479-499 25-45 (57)
23 PF04124 Dor1: Dor1-like famil 20.1 2.5E+02 0.0053 31.8 6.8 69 2-74 109-177 (338)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-107 Score=932.15 Aligned_cols=778 Identities=20% Similarity=0.259 Sum_probs=572.9
Q ss_pred chhHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHhHhHHHHHHHHHHHHhhhcCCCccchhhcccc
Q 002612 2 VPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHE 81 (900)
Q Consensus 2 vP~klE~~iseK~yl~A~~lL~~sl~~l~~~~L~~I~AL~dlR~~L~~qe~~L~d~LIEELh~hlYlKs~~~~~~~~~~~ 81 (900)
||+|||++|++|+|+||+++|++|+.++|++ |.+|++|+|||++|+.+++.|+|+|+||||+|+|+|+.- ..-.+..+
T Consensus 145 vPqkie~~i~keqY~~Asdll~~~~~~lng~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~-~~l~~~~~ 222 (982)
T KOG3691|consen 145 VPQKIETLIAKEQYLQASDLLTRAWELLNGP-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVA-YPLVSYCR 222 (982)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh-hhHHhhhc
Confidence 8999999999999999999999999999997 999999999999999999999999999999999999741 10000001
Q ss_pred cCCCCCcccccccccCCCCCccccccccCCCCCccccccCCCCCcCCCCCCCCCCccccccccccccc-cccccCCC-ch
Q 002612 82 MDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLS-IGWLANST-PD 159 (900)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~e~~~~~~~~~~~~d~~~~~~~~~~~~s~~~~~~l-~~~l~~~~-~~ 159 (900)
.+|++.+ + ++++|++ ++.++ .+++.....++ ..-..... ..
T Consensus 223 -----------------~~~~~s~--l-------~~~~~~~---in~t~--------l~~sr~~~ea~~~k~~~g~~sv~ 265 (982)
T KOG3691|consen 223 -----------------TNPLSSR--L-------NDFLYNN---INTTT--------LGTSRQLLEALCHKSDAGSGSVR 265 (982)
T ss_pred -----------------CCchhhH--H-------HHHhhcc---cCccc--------cCccHHHHHHHHHHhhcCCcchh
Confidence 0111111 0 1233332 11111 00110000000 00000000 00
Q ss_pred -----hHHHhhhcC-CCcchHHHHHHHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHhHHHhHhhhhcccccccccccc
Q 002612 160 -----EFVEAIRKS-DAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQT 233 (900)
Q Consensus 160 -----~~~e~~~~n-~e~~sf~yi~~LlesL~~LgkL~~Al~~i~qRl~~EL~~iV~~t~~e~~e~v~~~~~~~~~~~~~ 233 (900)
...++..-. ||+.+-.++.++++.++++.|+|.++++|..|+.+|+++||.+++.. +..++++.+.++
T Consensus 266 ~~~~~~~~~~l~~~~pe~~sslf~~il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~----i~~~g~~~~e~a-- 339 (982)
T KOG3691|consen 266 DIRIVLEKEDLLLSLPEANSSLFRRILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYD----ISLSGETDREHA-- 339 (982)
T ss_pred hHHHHHhhccccccchhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchh----hhccccchhhhh--
Confidence 012233333 67777788889999999999999999999999999999999998888 655555333210
Q ss_pred CccccccccccccccccccccccCCccccccccccCcccccccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 002612 234 GTTGLHFMKGQLRSYQLPKQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESR 313 (900)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~lf~kf~av~~~Hrvv~e~~~~~ 313 (900)
+.+ + --.+|++|||.||.||+++++.|+++++-...
T Consensus 340 ---------------------t~~-----t-----------------n~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~- 375 (982)
T KOG3691|consen 340 ---------------------TFD-----T-----------------NHFMLLELLEEIFTKFEAAAQKHASSLHKSLQ- 375 (982)
T ss_pred ---------------------hcc-----C-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 000 0 00268999999999999999999999873331
Q ss_pred hccccCCCCccccccCCCCCCCCccccCCCchhhhHHHHHHHHHHHHHHHhhcCCcccch-hhHHHH----------hhh
Q 002612 314 SSRHDINTPKSMIADANWNPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASA-DAAVQT----------ARL 382 (900)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~y~~~~vW~~iq~Ei~~LL~~YL~~~~~~~~~-~~~~~~----------~~~ 382 (900)
. |.-+ |.. +-...|+|.++|.++|+||+.||.+||+..+..... .++... ..|
T Consensus 376 -~--~vv~-----------P~~--sq~d~f~~~~~W~k~qs~ielllsE~i~~nn~~~~~~e~s~~~sp~s~~r~~~~~f 439 (982)
T KOG3691|consen 376 -N--DVVS-----------PKV--SQKDTFDFTDFWQKAQSEIELLLSEYIDNNNNSVKGTEMSINNSPASNERKKLFDF 439 (982)
T ss_pred -c--cccC-----------Ccc--cCCCcccHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCCcchhHHHHh
Confidence 1 1111 111 112359999999999999999999999877543221 222111 122
Q ss_pred hcCCCCCcccCCCCCccccceeccCcccccCcccchhhhcccccCCCcccccCCcccccccCCCcchhHHhhHHHHHHHH
Q 002612 383 ASKAPSKEKRDGSEDGLTFAFRFTDATISIPNQGADLIRQGWSRRGTNVLQEGYGTAAVLPEQGIYLAASIYRPVLQFTD 462 (900)
Q Consensus 383 ~~~~~~~~k~~~~~~~~~~lF~~~~~~~s~~~~~~~~l~~g~~~s~~~~~~e~~~~~~~Lv~psvFNm~~il~P~L~Fi~ 462 (900)
+...+..++. +.|-|+++..+.....++..........++--.+.++++..+.+|+||+|||++||+|++.|++
T Consensus 440 ~~e~~~~~~s------~~f~~~~~~~a~~k~~~l~~qrs~~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie 513 (982)
T KOG3691|consen 440 TNEIAVEPNS------NLFYHRINELANEKAPELILQRSNASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIE 513 (982)
T ss_pred hccccCCCCc------ccchhHHHHHhhhccchhhhhhhhhhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHH
Confidence 2222222221 2333444444333222211111111101110023344455578999999999999999999999
Q ss_pred HHHhhcCCCCcccCccchHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCcccccccccccccccccCCCcccchHHHHH
Q 002612 463 KVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAID 542 (900)
Q Consensus 463 ~~~~ilp~~~s~~~~~~l~~FlddFv~~vFLPql~~~l~~~~~~~v~~~daf~~~~~~~~~~~~~~~~~rPI~ksa~~~~ 542 (900)
.++.++|.+ .+.+|.++.|||+||+++||||+..++...|+.++++.|||+...+|+.+. ..+-.+|++++++.+.
T Consensus 514 ~te~~l~~~--p~q~c~l~~Fm~~yi~~sFl~qv~~~m~~~ie~~~k~~~a~~l~~s~~~i~--i~k~~~~l~q~~~~ve 589 (982)
T KOG3691|consen 514 ETESILKNP--PIQPCSLRNFMDEYIKGSFLPQVYKEMSSHIEGIMKDVDAFRLHRSWKIIP--IFKCHLPLLQSFHIVE 589 (982)
T ss_pred HHHHHcCCC--CCCCchHHHHHHHHHHHHhHHHHHHHHHHHhHhhcccCcceeeecCHhhhh--HHHHhHHHHHHHHHHH
Confidence 999999876 466899999999999999999999999999999999999999999996421 2244567777777776
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhhhcccchHhHHHhcCccccCCCC-C
Q 002612 543 FLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSYMEAVL------EKQSYMLIGRHDIDKLLRLEPASASLPN-G 615 (900)
Q Consensus 543 ~l~~~l~~ml~t~p~y~~~~~~li~~~L~~y~~~c~~~y~~lv~------~~~s~~w~~~~di~~lm~~~~~~~~~~~-~ 615 (900)
.-+.++...+++++.|.+-|+.++|..+..|++-|.+.|++.+. ++++++|++|+||+++++..|+|..... +
T Consensus 590 ~~L~~v~n~~~~l~~~~~~~l~m~~~~~~~Y~~~c~~a~~g~~~~~~~~~~~is~aWl~Dddisr~l~klpNw~~~s~~~ 669 (982)
T KOG3691|consen 590 DYLPIVANLAVDLYELSDYLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKNPSLEG 669 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhHHHhccchhHHHHHhccCCccccccc
Confidence 67778888999999999999999999999999999999999987 4689999999999999999999986422 1
Q ss_pred CCCC--CCC-----CCCCCchhhHHHHHHHHhc-CCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcc
Q 002612 616 QLDS--VSS-----VNDAETPGVESELRELFLS-LRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATLRESNL 687 (900)
Q Consensus 616 ~~~~--~~~-----~~~~~~~e~E~~l~~~~~~-~~~l~~~dli~d~~~l~~La~L~~Sl~Wl~~~l~~L~~~~~~~~~~ 687 (900)
+... .+. ..+....|.|+.+.++.+. +..++..||++|...++++|.+++|++|+++++........... .
T Consensus 670 ~~~~~r~E~e~~lq~~~r~~kE~e~li~nLgt~~q~~~s~~~il~~m~~lK~~a~m~ES~~w~a~r~rs~~~~l~~~~-l 748 (982)
T KOG3691|consen 670 QNELCREEEESFLQAGDRNIKESELLISNLGTDSQLSISVSDILNDMSDLKQLANMHESLEWFADRARSGFDFLPIDN-L 748 (982)
T ss_pred ccchhhhhcchHhHhhhcccchHhhhhcccchhhhcccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccchhh-h
Confidence 2111 000 1112234666666555433 56899999999999999999999999999999765554432110 0
Q ss_pred cccCCCCCCCC------C-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccC-CCc--cCCCCCCCCChH
Q 002612 688 VEESRKPHHNR------S-SSAPSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTS-RDY--LEDQDAEEPDDF 757 (900)
Q Consensus 688 ~~~~~~~~~~r------~-s~~~~~~f~~i~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~-~~y--~~~~~~~epD~~ 757 (900)
..+.+...... - ..-....|+.++++|++||++||+.||+|||+||||||+++.. ++| +-..+++||||.
T Consensus 749 l~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~s~e~D~~ 828 (982)
T KOG3691|consen 749 LGNNPALMKGYLTDLIELYDDFYKSAYEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDVSGEPDPS 828 (982)
T ss_pred hcCCccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccccCCCCHH
Confidence 00001000000 0 1123457999999999999999999999999999999996533 443 333349999999
Q ss_pred HHHHhhHHHHHHhhhccccchhhhhhhhccHHHHHHHHHHHhchhhhhhcHhhHHHHhhhHHHHHHHhhcCCCCChHHHH
Q 002612 758 IISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVR 837 (900)
Q Consensus 758 I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~aLQQ~L~nI~~~~e~~v~ 837 (900)
|+.||++|.++|++|+++|+|+|++|||+|||+|++.+||+++++|++||++|||||||||+||||+|+||++.|+
T Consensus 829 V~aL~k~l~~~e~klk~~L~e~k~~yIFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~re---- 904 (982)
T KOG3691|consen 829 VVALNKDLSTTEEKLKACLNEWKRRYIFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITESRE---- 904 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHhcCCCCCHHHHHHhhhhccCC-CCC-----chhHHHhHHhhhc
Q 002612 838 RRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG-REI-----PSDALDRVSEILS 899 (900)
Q Consensus 838 ~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~~~~-~~~-----~~~~~~r~~~i~~ 899 (900)
+||++||+||+||+.+|++|++.+.+++.+||+.||+++++|.|++ .|+ ..+++||+++|+|
T Consensus 905 vdld~ar~fy~ll~nt~deile~v~d~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~i~ 972 (982)
T KOG3691|consen 905 VDLDKARRFYELLQNTADEILEHVIDARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNIIG 972 (982)
T ss_pred cccHHHHHHHHHHhcCHHHHHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999985 443 5889999999873
No 2
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=98.48 E-value=6.8e-06 Score=87.42 Aligned_cols=202 Identities=13% Similarity=0.182 Sum_probs=154.8
Q ss_pred HHhHHHHHHHHHHhhhhhccCCcccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHhhhcccc
Q 002612 664 SDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEYRKLAIDCLKVL---RVEMQLETIFHLQEM 740 (900)
Q Consensus 664 ~~Sl~Wl~~~l~~L~~~~~~~~~~~~~~~~~~~~r~s~~~~~~f~~i~~~f~~La~~~Ll~L---rlEvR~~~iy~L~~l 740 (900)
.+|+..++..+..++..+..- . +. .. ...+..-|..++....+|+..|..+. =+++. ..+..+
T Consensus 11 ~ESl~fLa~~l~~~~p~l~~l---L-p~----~~--~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~----~i~~~I 76 (234)
T PF10474_consen 11 VESLSFLARQLESLRPYLESL---L-PP----NK--RDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLE----QILNSI 76 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---c-Cc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHH
Confidence 466777777766666544210 0 00 00 01223345566666666666555221 11111 233355
Q ss_pred cCCCccCCCCCCCCChHHHHHhhHHHHHHhhh-----ccccchhhhhhhhccHHHHHHHHHHHhchhhhhhcHhhHHHHh
Q 002612 741 TSRDYLEDQDAEEPDDFIISLTSQITRRDEEM-----APFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQIC 815 (900)
Q Consensus 741 ~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~l-----s~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~ 815 (900)
....|....-..++.++|-.|.+++..+...| ...+|++-++.+++.+-+++.+.||.|...++++|..|=..|.
T Consensus 77 a~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~ 156 (234)
T PF10474_consen 77 ANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQ 156 (234)
T ss_pred HHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHH
Confidence 56679887778999999999999999999888 5667888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHHcCCCHHHHHHHHHhcCCCCCHHHHHHhhhhccCC
Q 002612 816 RNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG 883 (900)
Q Consensus 816 rNI~aLQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~~~~ 883 (900)
...-.+|+.|..++..+.. .+.+.+-.|---|+.+++++.+.++++ ..||...+-+|++..+.+
T Consensus 157 lD~q~~~~~le~l~~~~~~---p~~~~Ve~YIKAyYl~e~e~~~W~~~h-~eYs~~ql~~Lv~~~~~~ 220 (234)
T PF10474_consen 157 LDFQQLQNKLEKLSGIRPI---PNREYVENYIKAYYLPEEELEEWIRTH-TEYSKKQLVGLVNCAAAS 220 (234)
T ss_pred HHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-cccCHHHHHHHHHHHHHh
Confidence 9999999999999887532 478888899999999999999999998 899999999999999876
No 3
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=97.89 E-value=0.0011 Score=78.68 Aligned_cols=337 Identities=13% Similarity=0.130 Sum_probs=190.3
Q ss_pred HHhhHHHHHHHHHHHhhcCCCCcccCccchHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCcccccccccccccccccC
Q 002612 451 ASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEK 530 (900)
Q Consensus 451 ~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~FlddFv~~vFLPql~~~l~~~~~~~v~~~daf~~~~~~~~~~~~~~~~ 530 (900)
+.+..-++.|=+++.+.+.-.. +....++..|..+=.-+.++--=.+...+.++..+.++|||+.+..... .....
T Consensus 97 ~HlI~e~~~FD~~L~~~~~y~~-d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~---~~~~~ 172 (494)
T PF04437_consen 97 SHLIDEILSFDKELRSLYGYPG-DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVE---ADSDE 172 (494)
T ss_dssp HHHHHHHHHHHHHHHHTS---S-------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HT---TSSGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcccc---CCchh
Confidence 6777788899999988863221 0111122222222222334333333444589999999999988854310 01122
Q ss_pred CCcccchHHHHHHHHHHHHHHHhcchH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccchHhHHHhcCc
Q 002612 531 GRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLEP 607 (900)
Q Consensus 531 ~rPI~ksa~~~~~l~~~l~~ml~t~p~--y~~~~~-~li~~~L~~y~~~c~~~y~~lv~~~~s~~w~~~~di~~lm~~~~ 607 (900)
.+|= ++|..|.+++..+..=...+|. |+-.|+ .+=+.+|++|++++...|++.... ..
T Consensus 173 ~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~----------------~s-- 233 (494)
T PF04437_consen 173 LKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESS----------------TS-- 233 (494)
T ss_dssp GG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT--------------------
T ss_pred hcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------cc--
Confidence 3443 6999999999999999998885 566677 888999999999999998864421 00
Q ss_pred cccCCCCCCCCCCCCCCCCCchhhHHHHHHHHhcCCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhhc--cC-
Q 002612 608 ASASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATL--RE- 684 (900)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~e~E~~l~~~~~~~~~l~~~dli~d~~~l~~La~L~~Sl~Wl~~~l~~L~~~~~--~~- 684 (900)
. ..-..+...+..+|..++|..|+..+|..+...+- +.
T Consensus 234 --------------~-------------------------~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~ 274 (494)
T PF04437_consen 234 --------------T-------------------------LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMR 274 (494)
T ss_dssp -----------------------------------------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH---
T ss_pred --------------c-------------------------hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhh
Confidence 0 00012335666788889999999999877775421 00
Q ss_pred --Cccccc-CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHhhhcccccCCCccCCC-----CCC
Q 002612 685 --SNLVEE-SRKPHHNRSSSAPSRDLASFADEYRKLAIDCLKVL----RVEMQLETIFHLQEMTSRDYLEDQ-----DAE 752 (900)
Q Consensus 685 --~~~~~~-~~~~~~~r~s~~~~~~f~~i~~~f~~La~~~Ll~L----rlEvR~~~iy~L~~l~~~~y~~~~-----~~~ 752 (900)
.....+ ....-..+.+..-..-||.++..|+.|...++-.+ +-|++-.+==|.. ...|.... .+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k---~~~W~~~~~~~~~~~~ 351 (494)
T PF04437_consen 275 AKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFK---RSQWSSIESPSDSSPL 351 (494)
T ss_dssp ---------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT-----GGGT----------
T ss_pred ccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccCCCCcccccccccC
Confidence 000000 00000000000112359999999999887776554 4444443332322 24453322 245
Q ss_pred CCChHHHHHhhHHHHHHhhhccccchhhhhhhhccHHHHHHHHHHHhchhhhhhcHhhHHHHhhhHHHHHHHhhcCCCCC
Q 002612 753 EPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSID 832 (900)
Q Consensus 753 epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~aLQQ~L~nI~~~~ 832 (900)
.|.|.....-.-|...=..|..+|++....-|+..+...++..|+...-...+.|..|+.|+...+-+|-..+..-+..+
T Consensus 352 ~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p 431 (494)
T PF04437_consen 352 SPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRP 431 (494)
T ss_dssp ---GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhccCH
Confidence 56666666666666666777788999999999999999999999999988889999999999999988877777755555
Q ss_pred hHHHHhhhHHHHHHHHHcCCCHHH
Q 002612 833 SEAVRRRLDRVRTYYELLNMPFEA 856 (900)
Q Consensus 833 e~~v~~~l~ra~~yyeL~~~~~~~ 856 (900)
+ ..|.+.+.--.|+.++.+.
T Consensus 432 ~----~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 432 E----AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp -----HHHHHHHHHHHHHGGGG-C
T ss_pred H----HHHHHHHHHHHHcCCCCcc
Confidence 4 4788888888888876553
No 4
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.00 E-value=0.24 Score=55.28 Aligned_cols=140 Identities=18% Similarity=0.283 Sum_probs=73.0
Q ss_pred cccCCCccCCCCCCCCChHHHHHhhHHHHHHhhhccccchhhhhhhhccHHHHHHHHHHHhc--hhhhhhcHhhHHHHhh
Q 002612 739 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKAL--ADMKNINLFGVQQICR 816 (900)
Q Consensus 739 ~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~--~~i~~iN~~Gvkkm~r 816 (900)
.+..-+|.+...+++|+.+|.++..-|..+=+..-..||+.-+..+.-|-..-++..|+.-. ..+++||.+|++.+-.
T Consensus 162 ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~ 241 (311)
T PF04091_consen 162 ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDL 241 (311)
T ss_dssp TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHH
T ss_pred hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Confidence 34445799999999999999999999999888888899999888888887777888888887 9999999999999999
Q ss_pred hHHHHHHHhhcCCCCCh--HHHHhhhHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCHHHHHHhhhh
Q 002612 817 NSIALEQALAAIPSIDS--EAVRRRLDRVRTYYELLNM-PFEALLAFVTEHENLFTTTEYASLLKV 879 (900)
Q Consensus 817 NI~aLQQ~L~nI~~~~e--~~v~~~l~ra~~yyeL~~~-~~~~ll~~i~e~~~~Fs~~Ey~~ll~L 879 (900)
+|-.|.+-.+++..... .....-|...||.-+|+.. ++++..+.-.. ...|+.-..+.+..|
T Consensus 242 Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r-~~kY~~v~p~~~~~l 306 (311)
T PF04091_consen 242 DVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIR-ERKYSRVKPEKAIKL 306 (311)
T ss_dssp HHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCcccc-ccccCCCCHHHHHHH
Confidence 99999999999832110 0112468888888888765 55665443222 235555555544443
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=86.68 E-value=56 Score=39.57 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCCccCCCCCCCCChHHHHHhhHHHHHHhhhccccchhhhh
Q 002612 703 PSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRN 782 (900)
Q Consensus 703 ~~~~f~~i~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~ 782 (900)
....|+.+...|.+++..|...|--+|=..+=-++..++...|..+ ..+..+-..+..+-.-+..+|.+.-+.
T Consensus 351 ~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~ 423 (566)
T PF06046_consen 351 ISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQ 423 (566)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3456889999999999999999988877765556667777789865 566666667777777788877777666
Q ss_pred hhhccHHHHHHHHHHHhchh--h----hhhcHhhHHHHhhhHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHHc-CCCHH
Q 002612 783 YIFGGICGIAANASIKALAD--M----KNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELL-NMPFE 855 (900)
Q Consensus 783 fIF~GL~~li~~~lI~~~~~--i----~~iN~~Gvkkm~rNI~aLQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~-~~~~~ 855 (900)
.+...+-.-+-.-.|.++-. + +.....+..||.+++-.|++-+....... .+...++.-..+=+++ ..+++
T Consensus 424 ~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~~~--~~~~~~~~l~~l~~ll~~~d~~ 501 (566)
T PF06046_consen 424 ELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGSKS--EVKSSFDVLEDLLELLRLEDPE 501 (566)
T ss_dssp HHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHH-HS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccchHHHHHHHHHHHhcCCHH
Confidence 66555544443333333322 2 34578899999999999999999988221 1223333333334444 23333
Q ss_pred HH---HHHHHhcCCCCCHHHHHHhh
Q 002612 856 AL---LAFVTEHENLFTTTEYASLL 877 (900)
Q Consensus 856 ~l---l~~i~e~~~~Fs~~Ey~~ll 877 (900)
.+ +..+...=+.++.+-+.++|
T Consensus 502 ~i~l~~~~l~~~ypD~~~~~v~alL 526 (566)
T PF06046_consen 502 MIKLEVSSLLQKYPDISEEHVEALL 526 (566)
T ss_dssp CHHHHHHHHHCC-TT--SHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33 22333323556666666665
No 6
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=59.98 E-value=28 Score=27.85 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHhc-CCCCCHHHHHHhh
Q 002612 838 RRLDRVRTYYELLNMPFEALLAFVTEH-ENLFTTTEYASLL 877 (900)
Q Consensus 838 ~~l~ra~~yyeL~~~~~~~ll~~i~e~-~~~Fs~~Ey~~ll 877 (900)
-.+.+|+.|-+...++.++|.+.+... |..||.+|-...+
T Consensus 5 ~Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 5 NALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 378999999999999999999999875 6899999977655
No 7
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.94 E-value=57 Score=40.74 Aligned_cols=281 Identities=16% Similarity=0.077 Sum_probs=137.8
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhh--hhcccchHhHHHh
Q 002612 530 KGRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSYMEAVLE---KQSY--MLIGRHDIDKLLR 604 (900)
Q Consensus 530 ~~rPI~ksa~~~~~l~~~l~~ml~t~p~y~~~~~~li~~~L~~y~~~c~~~y~~lv~~---~~s~--~w~~~~di~~lm~ 604 (900)
...|||+.++.+.+.+.-+-.-+...-.-...|..++-.+|..+-.+|++.| .++.. ++.. .-..+.-.++|++
T Consensus 570 ~~i~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~~~l~m~~~~~~~Y~-~~c~~a~~g~~~~~~~~~~~is~aWl~ 648 (982)
T KOG3691|consen 570 KIIPIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSDYLLNMVCNHLSDYL-DICRAALRGIVQHVSEVKRKISVAWLK 648 (982)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCcchhhhhhHHHhc
Confidence 4578999999988887433222222222256677777777777777787777 35542 2221 0001111234544
Q ss_pred cCcc---ccCCCCCCCCCCCCCCCCCchhhHHHHHHHHhcCCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 002612 605 LEPA---SASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRAT 681 (900)
Q Consensus 605 ~~~~---~~~~~~~~~~~~~~~~~~~~~e~E~~l~~~~~~~~~l~~~dli~d~~~l~~La~L~~Sl~Wl~~~l~~L~~~~ 681 (900)
-..- ...+++|....-......+..|.|-.+ + .+.+.+..+++ .- ..|...+.+..|..|+..|++.|++..
T Consensus 649 Dddisr~l~klpNw~~~s~~~~~~~~r~E~e~~l-q--~~~r~~kE~e~-li-~nLgt~~q~~~s~~~il~~m~~lK~~a 723 (982)
T KOG3691|consen 649 DDDISRQLKKLPNWKNPSLEGQNELCREEEESFL-Q--AGDRNIKESEL-LI-SNLGTDSQLSISVSDILNDMSDLKQLA 723 (982)
T ss_pred cchhHHHHHhccCCcccccccccchhhhhcchHh-H--hhhcccchHhh-hh-cccchhhhcccCHHHHHHHHHHHHHHH
Confidence 2111 112333321110011111112233332 2 23344533343 22 566666788889999999999888743
Q ss_pred c-cCCcccccCCCCCC--CCCCc-----------hh--------hHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 002612 682 L-RESNLVEESRKPHH--NRSSS-----------AP--------SRDLASFA-DEYRKLAIDCLKVLRVEMQLETIFHLQ 738 (900)
Q Consensus 682 ~-~~~~~~~~~~~~~~--~r~s~-----------~~--------~~~f~~i~-~~f~~La~~~Ll~LrlEvR~~~iy~L~ 738 (900)
. +++. . ...++ .-|++ ++ ..-.++.+ ..|++++ .-.=++--+|--+-|+.
T Consensus 724 ~m~ES~--~--w~a~r~rs~~~~l~~~~ll~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~---~~fq~la~~cLLlLhlE 796 (982)
T KOG3691|consen 724 NMHESL--E--WFADRARSGFDFLPIDNLLGNNPALMKGYLTDLIELYDDFYKSAYEELA---DSFQRLAFDCLLLLHLE 796 (982)
T ss_pred hhhhhH--H--HHHHHHHhhccccchhhhhcCCccccccccccchhhhcchHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 2 1110 0 00000 01111 11 11122222 2233333 33345556666666664
Q ss_pred -cc--cC--C--CccCCCCCCCCChHHHHHhhHHHHHHhhhccccchhhhhhhhccH-HHHHHHHHHHhchhhhhhcHhh
Q 002612 739 -EM--TS--R--DYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGI-CGIAANASIKALADMKNINLFG 810 (900)
Q Consensus 739 -~l--~~--~--~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL-~~li~~~lI~~~~~i~~iN~~G 810 (900)
.+ ++ + ....++-..--|. ++++-..+.++-..++++=..=+- -| .+=-..+|+.-..-+..+=-+|
T Consensus 797 VRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk~-----~L~e~k~~yIFeGL~hL~s~~LI~~ 870 (982)
T KOG3691|consen 797 VRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLKA-----CLNEWKRRYIFEGLGHLVSSILISG 870 (982)
T ss_pred HHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 22 1 1222222111222 666777777776666653211110 01 1124567888888888888889
Q ss_pred HHHH-hhhHHHHHHHhhcCC
Q 002612 811 VQQI-CRNSIALEQALAAIP 829 (900)
Q Consensus 811 vkkm-~rNI~aLQQ~L~nI~ 829 (900)
.+.| -.|=...+++|||+.
T Consensus 871 a~~i~~ln~~~ikkMcRNv~ 890 (982)
T KOG3691|consen 871 AQYIERLNEGGIKKMCRNVS 890 (982)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 9988 558899999999986
No 8
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.19 E-value=1.1e+02 Score=38.54 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=95.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHhHhHHHHHHHHHHHHhhhcCCCccchhhcccccCC
Q 002612 5 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDD 84 (900)
Q Consensus 5 klE~~iseK~yl~A~~lL~~sl~~l~~~~L~~I~AL~dlR~~L~~qe~~L~d~LIEELh~hlYlKs~~~~~~~~~~~~~~ 84 (900)
.+..+.++.+|..|.+++......|.+.+|.+|.....||.|+....+.+=-|+++|.-. |+++ +-+.
T Consensus 341 ~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~--~~~~----------Dlg~ 408 (951)
T KOG2115|consen 341 TVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFST--YSKS----------DLGR 408 (951)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHH--HHHH----------HhCC
Confidence 456788999999999999999999998899999999999999999999999999988654 3332 2000
Q ss_pred CCCcccccccccCCCCCccccccccCCCCCccccccCCCCCcCCCCCCCCCCccccccccccccccccccCCCchhHHHh
Q 002612 85 EVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEA 164 (900)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~e~~~~~~~~~~~~d~~~~~~~~~~~~s~~~~~~l~~~l~~~~~~~~~e~ 164 (900)
+.+ ++ +.. ..+
T Consensus 409 -----------------------------~~~------------~~-------------------------ls~--~le- 419 (951)
T KOG2115|consen 409 -----------------------------KLT------------LQ-------------------------LSI--LLE- 419 (951)
T ss_pred -----------------------------Cch------------HH-------------------------HHH--HHH-
Confidence 000 00 000 111
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCChHHHHHHHHhhhhHHHHHHHHHhHHH
Q 002612 165 IRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKA 215 (900)
Q Consensus 165 ~~~n~e~~sf~yi~~LlesL~~LgkL~~Al~~i~qRl~~EL~~iV~~t~~e 215 (900)
+ .|+.-++-.|-+..|||.+++.-.+.+..+..+|+..++.+
T Consensus 420 ------e---~~L~~~vlgllr~~klpsf~~~~~d~l~~~~k~iikq~i~d 461 (951)
T KOG2115|consen 420 ------E---DRLSSLVLGLLRTRKLPSFLEGYRDKLIETFKNIIKQKITD 461 (951)
T ss_pred ------H---hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 38889999999999999999999999999999999988877
No 9
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=47.51 E-value=6.2e+02 Score=31.73 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=104.9
Q ss_pred cCCCccCCCCC----CCCChHHHHHhhHHHHHHhhhccccchhhhhhhhccHHHHHHHHHHHhchhhh--hhcHhhHHHH
Q 002612 741 TSRDYLEDQDA----EEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMK--NINLFGVQQI 814 (900)
Q Consensus 741 ~~~~y~~~~~~----~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~i~--~iN~~Gvkkm 814 (900)
+..+|.|..+. ..|.|.....-.-|...-+.+..+|...=..-...=||.=+-.+++ .|++ .+|..|.-++
T Consensus 559 kk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~---~h~kk~~vs~~Gg~~l 635 (710)
T PF07393_consen 559 KKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLL---KHLKKFTVSSTGGLQL 635 (710)
T ss_pred CCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH---HHHHhCccCchhHHHH
Confidence 45689885543 2688999999999999999999999876555444555555555555 4555 4799999999
Q ss_pred hhhHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHHcCCCHHHHHHHHHhcC-CCCCHHHHHHhhhh
Q 002612 815 CRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHE-NLFTTTEYASLLKV 879 (900)
Q Consensus 815 ~rNI~aLQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~-~~Fs~~Ey~~ll~L 879 (900)
.+.|...|..++...... |..-|+.-+.--.||..+|+.+-..+.++. ..|+.+|.+..+++
T Consensus 636 ~~Dl~~Y~~~~~~~~~~~---v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 636 IKDLNEYQDFIRSWGIPS---VDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 999999999999985432 345788888888899999999999888876 68999999998865
No 10
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.50 E-value=49 Score=36.63 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=51.9
Q ss_pred hHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHhHhHHHHHHHHHHHH
Q 002612 4 ARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHA 64 (900)
Q Consensus 4 ~klE~~iseK~yl~A~~lL~~sl~~l~~~~L~~I~AL~dlR~~L~~qe~~L~d~LIEELh~ 64 (900)
..|+.++.+..|.+|.+++...-++++ ++.++..+++|+..|+.-...+-++|=.+|..
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~l~--~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~ 190 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQLLE--ELKGYSCVRHLSSQLQETLELIEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH--hcccchHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999995 69999999999999998887777777666654
No 11
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.15 E-value=6.8e+02 Score=31.16 Aligned_cols=214 Identities=12% Similarity=0.140 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 002612 655 NKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEYRKLAIDCLKVLRVEMQLETI 734 (900)
Q Consensus 655 ~~l~~La~L~~Sl~Wl~~~l~~L~~~~~~~~~~~~~~~~~~~~r~s~~~~~~f~~i~~~f~~La~~~Ll~LrlEvR~~~i 734 (900)
+.+.-+|+...+.+|..+--.++.+..+.-.+.+- ..-..|..--..|..+-..|+-.+=-|+-.-|+
T Consensus 492 d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~------------~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~ 559 (793)
T KOG2180|consen 492 DQLLDICCILSTAEYCLATTIQLEKKLKEIVDASY------------IKGVSFSEEREVFSSKISVSLQFLVQDLENALD 559 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhC
Confidence 56667899999999999888777654322111100 001235566667778888888888899999999
Q ss_pred hhcccccCCCccCCCCCCCCChHHHHHhhHHHHHHhhhccccchhhhhhhhccHHHH--HHHHHHHhchhhhhhcHhhHH
Q 002612 735 FHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGI--AANASIKALADMKNINLFGVQ 812 (900)
Q Consensus 735 y~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~l--i~~~lI~~~~~i~~iN~~Gvk 812 (900)
=-+++|....|.--...+|-.++|.++|.-+.++--.+...+.+..+.|.---+... .-.-|+.++...+.++.+|+.
T Consensus 560 ~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~E 639 (793)
T KOG2180|consen 560 PDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLNVLFRAKPISVVGAE 639 (793)
T ss_pred cccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHHHHHHhhhHhhhHHH
Confidence 999988777775555667889999999999999998888888877663322111111 122356666777789999999
Q ss_pred HHhhhHHHHHHHhhcCCC-------CChH--HHHhhhHHHHHHHHHcC---CCHHHHHHHHHhcCCCCCHHHHHHhhhhc
Q 002612 813 QICRNSIALEQALAAIPS-------IDSE--AVRRRLDRVRTYYELLN---MPFEALLAFVTEHENLFTTTEYASLLKVN 880 (900)
Q Consensus 813 km~rNI~aLQQ~L~nI~~-------~~e~--~v~~~l~ra~~yyeL~~---~~~~~ll~~i~e~~~~Fs~~Ey~~ll~L~ 880 (900)
|++...-+|--.|-.+.+ .++- -|..+|++|-.+--.+- .++++..+....=-+.-+-.||..+|.|-
T Consensus 640 QLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~~~~~~a~~~~vLelK 719 (793)
T KOG2180|consen 640 QLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLLPDPDSAEWQKVLELK 719 (793)
T ss_pred HHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCcHHHHHHHHHhc
Confidence 999999999888733332 2210 13456777766665443 35666666655544667778888888775
No 12
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=42.59 E-value=58 Score=39.87 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=58.9
Q ss_pred hHHHHHHhcccHHHHHHHHHHHHHHhcc---cCCCCccchHHHHHHHHHhHhHHHHHHHHHHHHhhhcCC
Q 002612 4 ARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 70 (900)
Q Consensus 4 ~klE~~iseK~yl~A~~lL~~sl~~l~~---~~L~~I~AL~dlR~~L~~qe~~L~d~LIEELh~hlYlKs 70 (900)
+.++..+.+|+|+.|.+.|.++-..++. +...+...+..||.++..++..|...|-++.++.+-.+.
T Consensus 113 ~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 113 EEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecC
Confidence 3567889999999999999999888887 455668899999999999999999999999999888765
No 13
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=33.97 E-value=64 Score=24.68 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHhcCCCCCHHHHHHhh
Q 002612 840 LDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 877 (900)
Q Consensus 840 l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 877 (900)
|+..+.||++=..+++++-..+.-+ ..|.+||+.|.
T Consensus 1 f~~iK~~Y~~g~~t~~~v~~~V~~g--~IT~eey~eIT 36 (40)
T PF09693_consen 1 FEDIKRYYDWGLYTKEDVKNFVEAG--WITKEEYKEIT 36 (40)
T ss_pred ChHHHHHHHcCCCCHHHHHHHhhcC--eECHHHHHHhh
Confidence 4678999999888999998888774 69999999874
No 14
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.24 E-value=7.2e+02 Score=30.97 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhHhhhcccccCCCccCCCCCCCCChHHHHHhhHHHHHHhhhccccchhhhh
Q 002612 707 LASFADEYRKLAIDC----LKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRN 782 (900)
Q Consensus 707 f~~i~~~f~~La~~~----Ll~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~ 782 (900)
+..++..|.+++... +--+++|++++ +..++...|+.. .-.+.-|..|---+.-+-+.+.++ ..+
T Consensus 467 ~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~----~~~lf~~~W~~g---~~~~~Iv~T~~dy~~D~~~~~~~~----f~~ 535 (667)
T KOG2286|consen 467 LKGLLDGFIEIAKHGVSGLLEEIFLDLQPL----LNKLFTKEWCAG---SVTENIVATLDDYLPDFKELMGEY----FVR 535 (667)
T ss_pred hHHHhHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHhhhhhhch---hhHHHHHHHHHHHHHHHHHHhhhH----HHH
Confidence 445555666665543 33446666653 567777889865 234445555555555555555543 677
Q ss_pred hhhccHHHHHHHHHHHhchhhhhhcHhhHHHHhhhHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHHcCCCHHHHH---H
Q 002612 783 YIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALL---A 859 (900)
Q Consensus 783 fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~aLQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~~~~~~~ll---~ 859 (900)
||=+-..+++=..+.+-++.=-.++ +++.+|.++.-.+++-++-+.++-+ ..-.-+.-.+.++.+. +|+.+. .
T Consensus 536 fi~e~~~~~v~~Yl~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~-~~~~~~~~l~el~~~~--d~d~~~~~~~ 611 (667)
T KOG2286|consen 536 FIEEASLELVIEYLRALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVD-TLISTISTLAELISLQ--DPDLIKLEVS 611 (667)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchh-hhhhhhHHHHHHHhcC--ChHHHHHHHH
Confidence 8777777777766666554444466 9999999999999999999987211 1111222222222222 555443 3
Q ss_pred HHHhcCCCCCHHHHHHhhh
Q 002612 860 FVTEHENLFTTTEYASLLK 878 (900)
Q Consensus 860 ~i~e~~~~Fs~~Ey~~ll~ 878 (900)
.+.+.-+.+..+-+.+||.
T Consensus 612 ~l~~~YpD~~~~~l~~il~ 630 (667)
T KOG2286|consen 612 TLLECYPDIPKDHLEAILK 630 (667)
T ss_pred HHHHHCCCCcHHHHHHHHH
Confidence 3444446666666666664
No 15
>PF12854 PPR_1: PPR repeat
Probab=30.88 E-value=63 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCChHHHHHHHH
Q 002612 178 QTMVECLCILGKVAAAGAIIC 198 (900)
Q Consensus 178 ~~LlesL~~LgkL~~Al~~i~ 198 (900)
.+||.++.+-|++++|.+++.
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 689999999999999999865
No 16
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=30.08 E-value=94 Score=24.49 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHhcCCCCCHHHHHHhh
Q 002612 839 RLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 877 (900)
Q Consensus 839 ~l~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~Ey~~ll 877 (900)
.|+..++||++=..+++++-..+.-+ .-|.+||+.|-
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~--~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKK--LITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcC--ccCHHHHHHHh
Confidence 58899999999999999998888764 58999999874
No 17
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=28.18 E-value=3.5e+02 Score=30.10 Aligned_cols=169 Identities=13% Similarity=0.126 Sum_probs=77.6
Q ss_pred HHHHHHHHHhHhhhcccccCCCccCCCCCCCCChHHHHHhhHHHH-HHhhhccccchhhhhhhhccHHHHHHHHHHHhch
Q 002612 723 KVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITR-RDEEMAPFIAEEKRNYIFGGICGIAANASIKALA 801 (900)
Q Consensus 723 l~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~-~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~ 801 (900)
+..++....+.++.+-...-..+..+....+-+-.+-.|-..+.. +.+.+....++...++|-.=+.-+++..+|+..-
T Consensus 109 ~~~~~~~~~k~v~~ll~~~~~~~~~~e~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~i~~li~fv~n~~ii~~I~ 188 (291)
T PF11989_consen 109 LEQELQSELKIVTDLLDGQLQNFSDNERNPSWDITIDQLLPYIQKEILEPLQQINHSEFKQFIGSLINFVYNDWIINSIL 188 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSS---HHHHHTHHHHHHHTHHHHHHTT-----HHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666555211111111111112233333333333322 3334555555666777766555556666666554
Q ss_pred hhhh---hcHhhHHHHhhhHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHHcCCCHHHHHHHHHhcC-CCCCHHHHHHhh
Q 002612 802 DMKN---INLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHE-NLFTTTEYASLL 877 (900)
Q Consensus 802 ~i~~---iN~~Gvkkm~rNI~aLQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~~~~~~~ll~~i~e~~-~~Fs~~Ey~~ll 877 (900)
.+.- .|..-.-.+|+++.... .+..+...+. -+ ....|-...=.++...-.+|.+..-+|. -.|+-+|+-.++
T Consensus 189 ~~~dISE~qS~~Ls~li~~l~~~t-~i~~l~~~~~-y~-~s~~Kf~~v~~lL~~hLkDIm~~Fy~Gel~~fsTdElI~lI 265 (291)
T PF11989_consen 189 SLDDISEKQSENLSELIDLLNNNT-EIPSLNITPK-YV-ESWNKFNNVGFLLNNHLKDIMEMFYQGELYDFSTDELIQLI 265 (291)
T ss_dssp TSS---HHHHHHHHHHHHHHHHHT---GGGTT-HH-HH-HHHHHHHHHHHHHT--HHHHHHHHHTTGGGGS-HHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcccc-chhhccccch-HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccHHHHHHHH
Confidence 4444 44444455566654321 1222211110 01 1222333333477888899999999976 569999999999
Q ss_pred hhccCCCCCchhHHHhH
Q 002612 878 KVNVPGREIPSDALDRV 894 (900)
Q Consensus 878 ~L~~~~~~~~~~~~~r~ 894 (900)
++.|-..+.=.+++..|
T Consensus 266 kslFadS~lR~n~I~eI 282 (291)
T PF11989_consen 266 KSLFADSPLRDNYIDEI 282 (291)
T ss_dssp HHHS---HHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHH
Confidence 99997544433333333
No 18
>PF15469 Sec5: Exocyst complex component Sec5
Probab=26.95 E-value=1.3e+02 Score=30.67 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=35.9
Q ss_pred CchhHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHH
Q 002612 1 MVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTK 49 (900)
Q Consensus 1 ~vP~klE~~iseK~yl~A~~lL~~sl~~l~~~~L~~I~AL~dlR~~L~~ 49 (900)
.+|.+|..+|..+.|-.|++--.+|-.+.+++ ...+..++.+.++.+.
T Consensus 88 ~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~-~~~~~vf~~v~~eve~ 135 (182)
T PF15469_consen 88 NLPSNLRECIKKGDYDQAINDYKKAKSLFEKY-KQQVPVFQKVWSEVEK 135 (182)
T ss_pred HhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 37999999999999999999999999998883 2244444444444433
No 19
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=26.25 E-value=2.4e+02 Score=31.69 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=37.8
Q ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCcccccc
Q 002612 476 GNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRA 518 (900)
Q Consensus 476 ~~~~l~~FlddFv~~vFLPql~~~l~~~~~~~v~~~daf~~~~ 518 (900)
+++.++.-++.||+.+=.+.|++++...++..++....|-+||
T Consensus 75 gNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~~~EvDP 117 (310)
T cd05134 75 GNSLTSKCIDETMKLAGMHYLQVTLKPIIDEICQEHKPCEIDP 117 (310)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCc
Confidence 4456888999999999999999999999999998888776666
No 20
>PF00981 Rota_NS53: Rotavirus RNA-binding Protein 53 (NS53); InterPro: IPR002148 The proteins in this entry are variously described as either non-structural protein 1 (NSP1) or non-structural RNA-binding protein 53(NS53). They are RNA binding proteins that contain a characteristic cysteine rich region [, ]. They are made at low levels in infected cells and are a component of early replication and are known to accumulate on the cytoskeleton of the infected cell.; GO: 0003723 RNA binding
Probab=21.59 E-value=2e+02 Score=33.30 Aligned_cols=68 Identities=9% Similarity=0.173 Sum_probs=56.4
Q ss_pred cchhHHhhHHHHHHHHHHHhhcCCCCcccCccchHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCcccccc
Q 002612 447 IYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRA 518 (900)
Q Consensus 447 vFNm~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~FlddFv~~vFLPql~~~l~~~~~~~v~~~daf~~~~ 518 (900)
-|-|.-||.-++.||+++-.- . -..+.|++..-+..+|+++|.+-.++.....++..+.--+|-..+.
T Consensus 335 DfRi~~iYn~im~Firal~KS---N-~nvgHCSS~E~iY~~i~~i~~~~~~~~~~~sv~~lFn~lePV~i~~ 402 (488)
T PF00981_consen 335 DFRIKKIYNNIMSFIRALVKS---N-VNVGHCSSQESIYPYIKNIFWVCDTEKWNESVNKLFNCLEPVEING 402 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHhc---C-CCccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCceEECC
Confidence 467999999999999986432 1 2467899999999999999999999999999998888888776554
No 21
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=21.56 E-value=64 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.7
Q ss_pred chhHHH----HHHhcccHHHHHHHHHHHHHHhcccC
Q 002612 2 VPARIE----KLIAGKQYYAAVQLHAQSALMLEREG 33 (900)
Q Consensus 2 vP~klE----~~iseK~yl~A~~lL~~sl~~l~~~~ 33 (900)
+|+.++ +.+...+|-.|.+++..+++++...+
T Consensus 6 L~~~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e 41 (69)
T TIGR02606 6 LGEHLESFIRSQVQSGRYGSASEVVRAALRLLEERE 41 (69)
T ss_pred cCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Confidence 455554 55567899999999999999998865
No 22
>PHA02503 putative transcription regulator; Provisional
Probab=21.30 E-value=72 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=17.4
Q ss_pred chHHHHHHHHHhhccccHHHH
Q 002612 479 GLLAFVENFVKDHLLPTMFVD 499 (900)
Q Consensus 479 ~l~~FlddFv~~vFLPql~~~ 499 (900)
.|..|-.+|++|..+|||.+-
T Consensus 25 ~l~~~s~~fl~~slipql~ew 45 (57)
T PHA02503 25 KLSVYSKDFLQNSLIPQLYEW 45 (57)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 366788899999999998763
No 23
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=20.10 E-value=2.5e+02 Score=31.82 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=56.7
Q ss_pred chhHHHHHHhcccHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHhHhHHHHHHHHHHHHhhhcCCCccc
Q 002612 2 VPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSS 74 (900)
Q Consensus 2 vP~klE~~iseK~yl~A~~lL~~sl~~l~~~~L~~I~AL~dlR~~L~~qe~~L~d~LIEELh~hlYlKs~~~~ 74 (900)
+|..++++|+...|-+|-++..-.-++..+++ +++-++.+..+.+..-..+...||.-|+.- +|=+-|-
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~--~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~--l~l~~~i 177 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFP--NIPLVKSIAQEVEAALQQMLSQLINQLRTP--LKLPACI 177 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHcCc--ccHHHHH
Confidence 79999999999999999999999888777754 588888888888888788888888887766 4444443
Done!