Query 002612
Match_columns 900
No_of_seqs 138 out of 206
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:10:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002612.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1328-1332//hhsearch_pdb/002612hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1e_A Vacuolar protein sortin 1.0 1 1 37.4 11.4 124 703-833 6-131 (141)
2 2fji_1 Exocyst complex compone 1.0 1 1 30.5 14.0 329 479-879 8-350 (399)
3 2d2s_A Exocyst complex compone 1.0 1 1 29.6 6.4 63 2-64 21-87 (235)
4 3fhn_A Protein transport prote 1.0 1 1 29.0 11.1 176 705-894 502-700 (706)
5 2a2f_X Exocyst complex compone 1.0 1 1 28.6 9.7 112 739-851 202-317 (325)
6 3hr0_A COG4; conserved oligome 1.0 1 1 27.1 11.1 217 655-880 17-250 (263)
7 3k8p_C DSL1, KLLA0C02695P; int 1.0 1 1 16.8 8.4 50 848-897 301-351 (357)
8 1wer_A P120GAP; GTPase activat 1.0 1 1 14.4 8.9 31 478-513 237-267 (334)
9 3ns4_A Vacuolar protein sortin 1.0 1 1 13.3 9.8 31 36-66 13-43 (271)
10 2vgl_A Adaptor protein complex 1.0 1 1 13.2 -2.7 32 841-872 578-609 (621)
No 1
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=37.40 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 25779999999999999999999888777676401223578766889999977489998668987886530056123242
Q 002612 703 PSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRN 782 (900)
Q Consensus 703 ~~~~f~~i~~~f~~La~~~Ll~LrlEiR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~ 782 (900)
+...||.+.+.|++=...+.-=|--=+.-+..-++. +|-. .+..|.|+.-.|.+++..+++.++..||+...+
T Consensus 6 lL~efDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~--k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~ 78 (141)
T 3n1e_A 6 MLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEV--KAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQ 78 (141)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCC--CSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999898999999999999999999999989999998-----7255--899899899999999999999988329999999
Q ss_pred HHHCCHHHHHHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHHHHHHCCCCCCH
Q ss_conf 2414489999999998311233420866887--76638999987310889984
Q 002612 783 YIFGGICGIAANASIKALADMKNINLFGVQQ--ICRNSIALEQALAAIPSIDS 833 (900)
Q Consensus 783 fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkk--m~rNI~~LQQ~L~nI~~~~e 833 (900)
.||..+=.-...-|-.....+..-|..|-++ |.+.+.-.+++|++|-.-+.
T Consensus 79 ~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 79 MLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999998688787763002789999999998624689985
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=30.49 Aligned_cols=329 Identities=11% Similarity=0.069 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 06799999988600001889999999998239-87665-34455454456545797520109999999999999984035
Q 002612 479 GLLAFVENFVKDHLLPTMFVDYRKGVQQAISS-PAAFR-PRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMP 556 (900)
Q Consensus 479 ~l~~Fld~Fv~~vFLPql~~~~~~~~~~~v~~-~daf~-~~~~~~~~~~~~~~~~rPIlksa~~f~~l~~~l~~ml~t~p 556 (900)
.....+++|+.. +..++..-++.+++. ...|. -+..|+. -..+.....+++++++++.+-.....++-
T Consensus 8 ~~~~L~~~Y~~~-----i~~~~~eW~~nil~~E~~~w~~r~~~P~~-----d~~g~~~t~~~~dvfqml~eql~~a~~~~ 77 (399)
T 2fji_1 8 EKETLFKDYLNL-----IVVKMTEWIGNLEKAEFDVFLERSTPPHS-----DSDGLLFLDGTKTCFQMFTQQVEVAAGTN 77 (399)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCSCCEE-----CTTSCEECHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 599999999999-----99999999999999999998846899986-----99988528864799999999999998479
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8--99999999999999999999999999862210110016411759973182556889998777777788785244889
Q 002612 557 K--FAADLVKYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLEPASASLPNGQLDSVSSVNDAETPGVESE 634 (900)
Q Consensus 557 ~--y~~~~~~li~~~L~~y~~~c~~~y~~lv~~~~s~~w~~~~di~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~e~E~~ 634 (900)
. .-..+...++..|..|...|...+.+-..+..+. ++. .++ .|.. ++ .. ... ....
T Consensus 78 ~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~----~~~---~~~-~~~~--~~-~~----~~~-~~~~------ 135 (399)
T 2fji_1 78 QAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINY----NHK---YDI-DPES--IT-PE----DEC-PGGL------ 135 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHT---TTT-GGGS--CC-TT----TCC-CSCH------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCC---CCC-CCCC--CC-CC----CCC-CCCH------
T ss_conf 7300999999999999999999999999999987520----100---012-4222--47-65----456-5418------
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99987328888765223675679999999985999999998741310147754334789999999961257799999999
Q 002612 635 LRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEY 714 (900)
Q Consensus 635 l~~~~~~~~~l~~~dli~d~~~l~~La~L~~Sl~Wl~~~l~~L~~~~~~~~~~~~~~~~~~~~r~s~~~~~~f~~i~~~f 714 (900)
+.-++.+.+...=+..-+.+|.+.........- .......|+.+...|
T Consensus 136 ----------------------~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~----------~~~~~~~l~~~~~~f 183 (399)
T 2fji_1 136 ----------------------VEYLIAVSNDQMKAADYAVAISSKYGKLVSKVY----------EKQITNHLEGTLDGF 183 (399)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH----------HHHHHHHHHTTHHHH
T ss_pred ----------------------HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHH----------HHHHHHHHHHHHHHH
T ss_conf ----------------------786566554488899999999999998626778----------888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHH
Q ss_conf 99999999999888777676401223578766889999977489998668987886530056123242241448999999
Q 002612 715 RKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAAN 794 (900)
Q Consensus 715 ~~La~~~Ll~LrlEiR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~ 794 (900)
.+++..|+..|--.+=..+=-++..++...|..+. .+-.+...+..+=..+..+|.+.-.+.+..-+-..+-.
T Consensus 184 ~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~ 256 (399)
T 2fji_1 184 AEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETII 256 (399)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999889999985770300876-------79999999999999999980869999999999999999
Q ss_pred HHHHHCHHHHHHC---HHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHCCCCH-HHHHHHH---HHC
Q ss_conf 9998311233420---866887766389999873108899847---89964689999999707999-9999999---845
Q 002612 795 ASIKALADMKNIN---LFGVQQICRNSIALEQALAAIPSIDSE---AVRRRLDRVRTYYELLNMPF-EALLAFV---TEH 864 (900)
Q Consensus 795 ~lI~~~~~i~~iN---~~Gvkkm~rNI~~LQQ~L~nI~~~~e~---~v~~~l~ra~~yyeL~~~~~-~~ll~~i---~e~ 864 (900)
-.+.....=.+++ ..|..||.+++-+|.+-+..+...... .+.-.+.+....-+ +...+ +.+...+ ...
T Consensus 257 ~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ 335 (399)
T 2fji_1 257 KFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEV 335 (399)
T ss_dssp HHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHH
T ss_conf 999998467777840599999999999999999998556532025778779999999997-3689577799999999986
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 999999999985620
Q 002612 865 ENLFTTTEYASLLKV 879 (900)
Q Consensus 865 ~~~Fs~~Eyk~ll~L 879 (900)
=+.++.+..+++|.+
T Consensus 336 ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 336 YWDSRIDLLVGILKC 350 (399)
T ss_dssp CTTCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 899999999999982
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=29.60 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=52.6
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 605899988200099999999999997535698----876660789999998595899999999987
Q 002612 2 VPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLHA 64 (900)
Q Consensus 2 vP~klE~~iseK~~l~A~~lL~~sl~~l~~~~L----~~IgAL~dlR~~L~~qe~~L~d~LIEELh~ 64 (900)
.||.|+-+|++.+|-+|++++.+.=+.+.+-.- .+.-++..++..+..++..|.+.|++||..
T Consensus 21 ~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~ 87 (235)
T 2d2s_A 21 GVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS 87 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6298899999976999999999999998728444565536789999999999999999999999870
No 4
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=29.04 Aligned_cols=176 Identities=11% Similarity=0.156 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 7799999999999999-999----9988877767640122357876688999--------99774899986689878865
Q 002612 705 RDLASFADEYRKLAID-CLK----VLRVEMQLETIFHLQEMTSRDYLEDQDA--------EEPDDFIISLTSQITRRDEE 771 (900)
Q Consensus 705 ~~f~~i~~~f~~La~~-~Ll----~LrlEiR~~~iy~L~~l~~~~y~~~~~~--------~epD~~I~~Ln~dL~~~de~ 771 (900)
.-||.++..|+.|..+ .+- .+.-|++-.+=-|.. ...|....++ ..|.+.+...-+-|...=..
T Consensus 502 SIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k---~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~ 578 (706)
T 3fhn_A 502 SLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK---ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINK 578 (706)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHH---CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 608999999999998889999999999999999987748---16685667877666555688988899999999999999
Q ss_pred HCCC-CCHHHHHHHHCCHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 3005-612324224144899999999983112334208668877663899998731088998478996468999999970
Q 002612 772 MAPF-IAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELL 850 (900)
Q Consensus 772 ls~~-L~~~k~~fIF~GL~~li~~~lI~~~~~i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~ 850 (900)
|... |+..-..-|+..+..-++..|..+.-.-.+.|.+|+.+++..+-+|-..+. +..... +..|.+.+..--|+
T Consensus 579 L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~~~---~~~~~~L~E~l~LL 654 (706)
T 3fhn_A 579 LDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSHAT---NYKCMSLHELVKIL 654 (706)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTTCC---CHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHHC
T ss_conf 99813777899999999999999999999986086488889999999999999856-888414---56779999999981
Q ss_pred CCCHHHHHHHHHHCCCCCC---------HHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 7999999999984599999---------9999985620158888944689867
Q 002612 851 NMPFEALLAFVTEHENLFT---------TTEYASLLKVNVPGREIPSDALDRV 894 (900)
Q Consensus 851 ~~~~~~ll~~i~e~~~~Fs---------~~Eyk~ll~L~~~~~~~~~~~~~~~ 894 (900)
.+..+. +...|. +++++..+.+.+-+..--.+++-|+
T Consensus 655 ~L~~d~-------~~~~f~~~~y~~~~~~~~l~~~~~i~~l~~~~i~d~lyr~ 700 (706)
T 3fhn_A 655 KLKYDP-------NNQQFLNPEYIKTGNFTSLKEAYSIKYLKDTKIQDALYRI 700 (706)
T ss_dssp GGGGCG-------GGTTTTSHHHHHHCCCSHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred CCCCCC-------CHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 798874-------2206778988701774889986486468878999999999
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=28.59 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCHHHHHHHHHHHHC-HHHHHHCHHHHHHHHH
Q ss_conf 23578766889999977489998668987886530056123-242241448999999999831-1233420866887766
Q 002612 739 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEE-KRNYIFGGICGIAANASIKAL-ADMKNINLFGVQQICR 816 (900)
Q Consensus 739 ~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~-k~~fIF~GL~~li~~~lI~~~-~~i~~iN~~Gvkkm~r 816 (900)
.+..-+|.+...+++|+.+|.+|..-|..+=.. -..||+. +....|.-+.|+.+.++=--. ..+++||.+|++.+-.
T Consensus 202 ~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~ 280 (325)
T 2a2f_X 202 ELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINL 280 (325)
T ss_dssp TTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
T ss_conf 760368878889998568999999999999999-8739999999999999999999999986486114329999998999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHCC
Q ss_conf 3899998731088998--4789964689999999707
Q 002612 817 NSIALEQALAAIPSID--SEAVRRRLDRVRTYYELLN 851 (900)
Q Consensus 817 NI~~LQQ~L~nI~~~~--e~~v~~~l~ra~~yyeL~~ 851 (900)
+|-.|.+-.++-...+ +......|.-.||--+|+.
T Consensus 281 Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~ 317 (325)
T 2a2f_X 281 DLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLI 317 (325)
T ss_dssp HHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999987278887552269999899999999987
No 6
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=27.10 Aligned_cols=217 Identities=14% Similarity=0.190 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999999998599999999874131014775433478999999996-------12577999999999999999999988
Q 002612 655 NKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSS-------APSRDLASFADEYRKLAIDCLKVLRV 727 (900)
Q Consensus 655 ~~l~~La~L~~Sl~Wl~~~l~~L~~~~~~~~~~~~~~~~~~~~r~s~-------~~~~~f~~i~~~f~~La~~~Ll~Lrl 727 (900)
.+..+.+.+.++++.-.+-+.+|.+....+-...-+ ...... .....|.++...|++|....+-.|.-
T Consensus 17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp-----~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~ 91 (263)
T 3hr0_A 17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFS-----QGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNS 91 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888567302265999999999999999888998689-----864106789999999999999999999999999999999
Q ss_pred -HHHHHHHHHCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCHH
Q ss_conf -87776764012235787668899----9997748999866898788653005612324224144899999999983112
Q 002612 728 -EMQLETIFHLQEMTSRDYLEDQD----AEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALAD 802 (900)
Q Consensus 728 -EiR~~~iy~L~~l~~~~y~~~~~----~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~ 802 (900)
=++-|.--.|.++...+|.++.+ ...-||++..+...+...=.-+...|.+.-..-+...+...+++.+=.....
T Consensus 92 ~~ikprLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~ 171 (263)
T 3hr0_A 92 TAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK 171 (263)
T ss_dssp HHTHHHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97698899999987253356777677551016689999999999999999987185799999999999999999999982
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHC-C---CCCCHHHHHHHH
Q ss_conf 33420866887766389999873108899847899646899999997079-999999999845-9---999999999856
Q 002612 803 MKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNM-PFEALLAFVTEH-E---NLFTTTEYASLL 877 (900)
Q Consensus 803 i~~iN~~Gvkkm~rNI~~LQQ~L~nI~~~~e~~v~~~l~ra~~yyeL~~~-~~~~ll~~i~e~-~---~~Fs~~Eyk~ll 877 (900)
+++|..|.-|+=|.+-.|.-.+++++.-. +.-.|.|..+--.++.+ .++++.+...+. + -..|.+|.+.++
T Consensus 172 -~~fn~lGal~LdrDvr~li~~~~~~~~~~---lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il 247 (263)
T 3hr0_A 172 -STFNRLGGLQFDKELRSLIAYLTTVTTWT---IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVL 247 (263)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHHHHTTSCTT---HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf -77070558999999999999997046611---66899999999999847976899987334678853347999999999
Q ss_pred HHC
Q ss_conf 201
Q 002612 878 KVN 880 (900)
Q Consensus 878 ~L~ 880 (900)
.|=
T Consensus 248 ~lR 250 (263)
T 3hr0_A 248 ALR 250 (263)
T ss_dssp TTB
T ss_pred HHH
T ss_conf 856
No 7
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=1.00 E-value=1 Score=16.85 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=34.9
Q ss_pred HHCCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 970799999999998459-99999999985620158888944689867855
Q 002612 848 ELLNMPFEALLAFVTEHE-NLFTTTEYASLLKVNVPGREIPSDALDRVSEI 897 (900)
Q Consensus 848 eL~~~~~~~ll~~i~e~~-~~Fs~~Eyk~ll~L~~~~~~~~~~~~~~~~~i 897 (900)
+++..+=.+|.....+|. ..|+.+|++.+++..|-..+--.+++.+|-+|
T Consensus 301 ~IL~ssLkDI~~lW~eGeL~~FstdEVv~LIrALFaDT~~Rr~aI~eIrei 351 (357)
T 3k8p_C 301 KILTAHLKDILEMFYEGEFFLFETDEIVQWIILLFADTPTRRDCIDEIRRV 351 (357)
T ss_dssp HHHTCCHHHHHHHHHTTGGGGSCHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999853999999996699642648999999999776987899999999999
No 8
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=1.00 E-value=1 Score=14.37 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 406799999988600001889999999998239876
Q 002612 478 DGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAA 513 (900)
Q Consensus 478 ~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~v~~~da 513 (900)
...+..+.+|+.... + .+...++.....+++
T Consensus 237 e~~m~~lN~fi~~~~-~----~~~~fl~~i~~v~~~ 267 (334)
T 1wer_A 237 EPYMEGVNPFIKSNK-H----RMIMFLDELGNVPEL 267 (334)
T ss_dssp SGGGGGGHHHHHHHH-H----HHHHHHHHHTCCCSC
T ss_pred CHHHHHHHHHHHHHH-H----HHHHHHHHHCCCCCC
T ss_conf 177888999999989-9----999999986789995
No 9
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=13.32 Aligned_cols=31 Identities=0% Similarity=-0.166 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7666078999999859589999999998725
Q 002612 36 TVGALQDVRSELTKLRGVLFYKVLEDLHAHL 66 (900)
Q Consensus 36 ~IgAL~dlR~~L~~qe~~L~d~LIEELh~hL 66 (900)
.|=.+=.-..|..+-=..+-+.++-+..+.|
T Consensus 13 ~Il~~~nR~~Y~rnFcDK~ve~~~~~Fi~~I 43 (271)
T 3ns4_A 13 FILSQFNRDVYKWNFLDKVIDIMTTNFVSNT 43 (271)
T ss_dssp CCCGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999855899999999999999999999999
No 10
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=13.21 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
Q ss_conf 89999999707999999999984599999999
Q 002612 841 DRVRTYYELLNMPFEALLAFVTEHENLFTTTE 872 (900)
Q Consensus 841 ~ra~~yyeL~~~~~~~ll~~i~e~~~~Fs~~E 872 (900)
+||..||.|+..+++++.+.+.+..+.|+..+
T Consensus 578 dRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~ 609 (621)
T 2vgl_A 578 QRAVEYLRLSTVASTDILATVLEEMPPFPERE 609 (621)
T ss_dssp HHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999985699999988851389899764
Done!