BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002613
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFK 222
++++ +P + + I++ SH D+V A GA D +S VAV LELAR MS+
Sbjct: 204 HNVIATKKPDANKKNTNDIIIIGSHHDSVEKAPGANDDASGVAVTLELARVMSKLK--TD 261
Query: 223 NAVIFLFNTGEEEGLNGAHSF 243
+ F+ EE GL G+ +
Sbjct: 262 TELRFITFGAEENGLIGSKKY 282
>pdb|3SI1|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase
Length = 327
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 49/173 (28%)
Query: 105 GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI-YSDLN 163
GS A Q++ Q+++ W V+V+ F+ RT Y +
Sbjct: 46 GSPGSYSARQHIMQRIQRLQAE--WVVEVDT----------------FLSRTPYGYRSFS 87
Query: 164 HIVLRIQPKYASEAAENAILVSSHIDTVFAAE-------GAGDCSSCVAVMLELARAMSQ 216
+I+ + P+ A+ ++++ H D+ + GA D + A+MLELARA+ +
Sbjct: 88 NIISTLNPE-----AKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELARALDK 142
Query: 217 WAHGFKN--------AVIFLFNTGEE--------EGLNGAHSFVTQ--AGPHP 251
H K+ ++ +F GEE + L G+ + + PHP
Sbjct: 143 KLHSLKDVSGSKPDLSLRLIFFDGEEAFHHWSPQDSLYGSRHLAQKMASSPHP 195
>pdb|3SI2|A Chain A, Structure Of Glycosylated Murine Glutaminyl Cyclase In
Presence Of The Inhibitor Pq50 (Pdbd150)
Length = 327
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 49/173 (28%)
Query: 105 GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI-YSDLN 163
GS A Q++ Q+++ W V+V+ F+ RT Y +
Sbjct: 46 GSPGSYSARQHIMQRIQRLQAE--WVVEVDT----------------FLSRTPYGYRSFS 87
Query: 164 HIVLRIQPKYASEAAENAILVSSHIDTVFAAE-------GAGDCSSCVAVMLELARAMSQ 216
+I+ + P+ A+ ++++ H D+ + GA D + A+MLELARA+ +
Sbjct: 88 NIISTLNPE-----AKRHLVLACHYDSKYFPRWDSRVFVGATDSAVPCAMMLELARALDK 142
Query: 217 WAHGFKN--------AVIFLFNTGEE--------EGLNGAHSFVTQ--AGPHP 251
H K+ ++ +F GEE + L G+ + + PHP
Sbjct: 143 KLHSLKDVSGSKPDLSLQLIFFDGEEAFHHWSPQDSLYGSRHLAQKMASSPHP 195
>pdb|3TC8|A Chain A, Crystal Structure Of A Hypothetical Zn-Dependent
Exopeptidase (Bdi_3547) From Parabacteroides Distasonis
Atcc 8503 At 1.06 A Resolution
pdb|3TC8|B Chain B, Crystal Structure Of A Hypothetical Zn-Dependent
Exopeptidase (Bdi_3547) From Parabacteroides Distasonis
Atcc 8503 At 1.06 A Resolution
Length = 309
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAV 254
+GA D S V +LE+AR + Q A G +IF + E G FVT P W +
Sbjct: 123 DGADDGGSGVGALLEIARQIGQKAPGIGIDIIFF----DAEDY-GTPEFVTDYTPDSWCL 177
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 182 ILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAH 241
++ +H+D+V + G D S A +LE A A+S+ + + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 242 SFVTQ 246
+V
Sbjct: 140 FYVNN 144
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 182 ILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAH 241
++ +H+D+V + G D S A +LE A A+S+ + + F + EE GL G+
Sbjct: 80 LMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSK 139
Query: 242 SFVTQ 246
+V
Sbjct: 140 FYVNN 144
>pdb|3KL9|A Chain A, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|B Chain B, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|C Chain C, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|D Chain D, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|E Chain E, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|F Chain F, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|G Chain G, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|H Chain H, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|I Chain I, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|J Chain J, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|K Chain K, Crystal Structure Of Pepa From Streptococcus Pneumoniae
pdb|3KL9|L Chain L, Crystal Structure Of Pepa From Streptococcus Pneumoniae
Length = 355
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 199 DCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGPHPWAVENFA 258
D V ++ ELA A+S G N + N EE GL GAH+ T+ P E F
Sbjct: 182 DNRYGVLMVSELAEALSGQKLG--NELYLGSNVQEEVGLRGAHTSTTKFDP-----EVFL 234
Query: 259 AAAKYPSGQV 268
A P+G V
Sbjct: 235 AVDCSPAGDV 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,688,149
Number of Sequences: 62578
Number of extensions: 944188
Number of successful extensions: 2108
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2102
Number of HSP's gapped (non-prelim): 12
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)