Query 002613
Match_columns 900
No_of_seqs 367 out of 2137
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 7E-128 2E-132 1127.0 59.8 761 40-892 10-834 (834)
2 PRK10199 alkaline phosphatase 99.9 4.4E-23 9.6E-28 228.2 22.6 236 86-340 30-344 (346)
3 PF04389 Peptidase_M28: Peptid 99.9 4E-24 8.6E-29 217.0 7.6 144 180-324 1-179 (179)
4 KOG2195 Transferrin receptor a 99.8 1.2E-19 2.7E-24 216.0 15.0 181 158-346 334-552 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.7 1.1E-16 2.5E-21 168.1 19.4 226 82-336 46-334 (338)
6 TIGR03176 AllC allantoate amid 99.5 4.9E-14 1.1E-18 161.8 14.9 126 87-246 3-140 (406)
7 COG2234 Iap Predicted aminopep 99.4 3.3E-13 7.3E-18 155.8 11.2 171 161-336 183-392 (435)
8 PRK12891 allantoate amidohydro 99.4 1.7E-12 3.6E-17 149.4 16.3 129 83-245 6-146 (414)
9 PRK12890 allantoate amidohydro 99.4 1.9E-12 4.2E-17 148.7 16.3 128 85-246 7-145 (414)
10 PRK13590 putative bifunctional 99.4 1.3E-12 2.9E-17 156.5 15.0 127 85-245 179-321 (591)
11 PRK13799 unknown domain/N-carb 99.4 1.3E-12 2.9E-17 156.5 14.4 128 84-245 178-321 (591)
12 TIGR01879 hydantase amidase, h 99.4 2.5E-12 5.5E-17 147.3 15.4 126 87-246 1-138 (401)
13 PRK09290 allantoate amidohydro 99.4 1.1E-11 2.3E-16 142.6 16.3 129 84-246 4-144 (413)
14 PRK12892 allantoate amidohydro 99.3 2.9E-11 6.4E-16 138.6 16.0 128 84-246 7-145 (412)
15 PRK12893 allantoate amidohydro 99.3 3.5E-11 7.5E-16 138.1 15.6 129 84-246 7-147 (412)
16 PRK09133 hypothetical protein; 99.2 9.8E-11 2.1E-15 137.0 17.0 136 82-246 32-189 (472)
17 PRK06133 glutamate carboxypept 99.2 1.2E-10 2.7E-15 133.8 16.6 131 85-246 35-183 (410)
18 PRK08596 acetylornithine deace 99.2 2.8E-10 6.1E-15 131.3 16.5 131 87-246 13-165 (421)
19 PRK07473 carboxypeptidase; Pro 99.2 4E-10 8.7E-15 128.2 16.2 134 84-246 8-159 (376)
20 PRK07906 hypothetical protein; 99.1 3.1E-10 6.8E-15 130.9 14.1 128 90-246 2-153 (426)
21 TIGR01910 DapE-ArgE acetylorni 99.1 3.4E-10 7.4E-15 128.3 14.2 130 91-246 2-152 (375)
22 PRK08588 succinyl-diaminopimel 99.1 4.1E-10 9E-15 127.6 14.4 126 86-246 1-147 (377)
23 PRK08262 hypothetical protein; 99.1 8.1E-10 1.7E-14 129.8 17.0 133 81-245 38-200 (486)
24 TIGR01893 aa-his-dipept aminoa 99.1 5.6E-10 1.2E-14 131.0 13.8 123 86-246 3-152 (477)
25 PRK07338 hypothetical protein; 99.1 1.5E-09 3.2E-14 124.2 15.5 143 86-246 16-176 (402)
26 TIGR01883 PepT-like peptidase 99.1 9.4E-10 2E-14 123.9 12.9 127 88-245 1-145 (361)
27 PRK13983 diaminopimelate amino 99.0 2.3E-09 5E-14 122.1 15.3 134 87-245 5-164 (400)
28 PRK05469 peptidase T; Provisio 99.0 1.9E-09 4.1E-14 123.8 14.7 126 87-245 2-185 (408)
29 TIGR01880 Ac-peptdase-euk N-ac 99.0 2.9E-09 6.3E-14 121.9 15.4 134 83-246 5-160 (400)
30 PRK06837 acetylornithine deace 99.0 2.7E-09 5.9E-14 123.4 15.3 145 86-245 19-184 (427)
31 PRK13381 peptidase T; Provisio 99.0 2.4E-09 5.3E-14 122.8 14.2 125 89-246 3-184 (404)
32 PRK13013 succinyl-diaminopimel 99.0 4.5E-09 9.8E-14 121.2 16.2 136 86-244 13-169 (427)
33 PRK09104 hypothetical protein; 99.0 4.9E-09 1.1E-13 122.5 15.9 131 85-246 15-175 (464)
34 PRK06915 acetylornithine deace 99.0 5.4E-09 1.2E-13 120.5 15.9 145 86-246 16-181 (422)
35 PRK04443 acetyl-lysine deacety 99.0 3.4E-09 7.4E-14 119.2 13.8 119 85-245 4-134 (348)
36 PRK07907 hypothetical protein; 99.0 7.4E-09 1.6E-13 120.5 16.6 128 85-246 16-168 (449)
37 PRK06446 hypothetical protein; 99.0 6.4E-09 1.4E-13 120.7 15.7 126 87-246 2-149 (436)
38 PRK07522 acetylornithine deace 99.0 4.9E-09 1.1E-13 119.1 14.2 126 87-246 4-149 (385)
39 PRK13009 succinyl-diaminopimel 99.0 6.2E-09 1.3E-13 117.8 14.8 122 88-245 3-146 (375)
40 PRK07318 dipeptidase PepV; Rev 99.0 4.9E-09 1.1E-13 122.7 14.3 125 86-246 13-165 (466)
41 TIGR01882 peptidase-T peptidas 98.9 7E-09 1.5E-13 119.4 14.4 127 87-245 3-187 (410)
42 PRK07205 hypothetical protein; 98.9 8E-09 1.7E-13 120.1 14.9 126 85-246 9-163 (444)
43 PRK08201 hypothetical protein; 98.9 1.1E-08 2.3E-13 119.4 15.8 132 85-246 12-167 (456)
44 TIGR01892 AcOrn-deacetyl acety 98.9 7.2E-09 1.6E-13 116.6 13.7 122 92-246 2-143 (364)
45 PRK08652 acetylornithine deace 98.9 8.3E-09 1.8E-13 115.3 13.2 119 87-246 2-132 (347)
46 PRK05111 acetylornithine deace 98.9 1.2E-08 2.5E-13 116.0 14.3 128 86-246 4-156 (383)
47 PRK15026 aminoacyl-histidine d 98.9 1.8E-08 3.8E-13 118.5 15.7 126 83-246 6-158 (485)
48 PRK00466 acetyl-lysine deacety 98.9 1.3E-08 2.7E-13 114.5 13.3 115 86-246 9-135 (346)
49 PRK07079 hypothetical protein; 98.9 1.9E-08 4.2E-13 117.8 15.2 134 84-246 14-175 (469)
50 TIGR01886 dipeptidase dipeptid 98.9 1.7E-08 3.7E-13 118.2 14.7 125 86-246 12-164 (466)
51 COG1363 FrvX Cellulase M and r 98.9 7E-08 1.5E-12 108.2 18.6 200 87-339 2-348 (355)
52 PRK08651 succinyl-diaminopimel 98.8 2.9E-08 6.3E-13 113.2 14.7 133 86-246 5-158 (394)
53 PRK13004 peptidase; Reviewed 98.8 3.8E-08 8.3E-13 112.8 15.0 123 86-246 14-158 (399)
54 PF01546 Peptidase_M20: Peptid 98.8 1.5E-08 3.3E-13 102.9 10.3 139 183-335 1-188 (189)
55 PRK13007 succinyl-diaminopimel 98.8 3.4E-08 7.4E-13 110.8 14.0 117 86-245 6-139 (352)
56 COG0624 ArgE Acetylornithine d 98.8 6.1E-08 1.3E-12 111.3 14.6 129 87-246 13-163 (409)
57 PF05450 Nicastrin: Nicastrin; 98.8 5.6E-08 1.2E-12 103.7 13.0 67 180-246 1-74 (234)
58 KOG2275 Aminoacylase ACY1 and 98.8 7.5E-08 1.6E-12 107.8 14.0 130 83-245 25-176 (420)
59 TIGR01246 dapE_proteo succinyl 98.8 8.4E-08 1.8E-12 108.6 14.5 119 91-245 3-143 (370)
60 TIGR01887 dipeptidaselike dipe 98.8 8.7E-08 1.9E-12 111.8 14.9 123 87-246 2-153 (447)
61 TIGR01902 dapE-lys-deAc N-acet 98.7 7.4E-08 1.6E-12 107.8 12.5 112 92-246 2-125 (336)
62 PRK06156 hypothetical protein; 98.7 1.9E-07 4.1E-12 110.9 16.5 126 85-246 44-201 (520)
63 PRK08554 peptidase; Reviewed 98.7 2.2E-07 4.8E-12 108.1 15.3 123 88-245 2-147 (438)
64 TIGR01891 amidohydrolases amid 98.7 1.7E-07 3.6E-12 106.1 13.8 117 91-246 3-136 (363)
65 TIGR03320 ygeY M20/DapE family 98.6 2.7E-07 5.8E-12 105.6 14.1 112 86-236 12-145 (395)
66 TIGR03106 trio_M42_hydro hydro 98.6 1.7E-06 3.6E-11 97.7 18.7 43 197-240 181-223 (343)
67 TIGR03526 selenium_YgeY putati 98.6 5.1E-07 1.1E-11 103.4 14.7 120 87-245 13-155 (395)
68 PRK09961 exoaminopeptidase; Pr 98.6 1.3E-06 2.8E-11 98.6 17.6 134 197-337 164-333 (344)
69 TIGR01900 dapE-gram_pos succin 98.6 3.1E-07 6.6E-12 104.6 12.5 118 93-246 2-154 (373)
70 TIGR03107 glu_aminopep glutamy 98.5 3E-06 6.6E-11 95.7 18.2 124 197-337 176-341 (350)
71 PRK08737 acetylornithine deace 98.5 8.7E-07 1.9E-11 100.7 12.6 118 86-246 5-143 (364)
72 PLN02280 IAA-amino acid hydrol 98.5 1.4E-06 3E-11 102.5 14.6 121 90-246 96-232 (478)
73 PRK09864 putative peptidase; P 98.5 6.2E-06 1.3E-10 93.3 19.0 123 197-337 173-341 (356)
74 COG4882 Predicted aminopeptida 98.5 1.6E-06 3.5E-11 95.0 13.5 148 178-339 188-359 (486)
75 PLN02693 IAA-amino acid hydrol 98.5 1.9E-06 4.2E-11 100.3 15.0 121 88-246 48-182 (437)
76 KOG2526 Predicted aminopeptida 98.4 1.7E-06 3.7E-11 96.6 12.4 170 160-330 191-410 (555)
77 PF09940 DUF2172: Domain of un 98.1 0.00013 2.9E-09 81.6 17.8 214 83-340 56-308 (386)
78 COG4187 RocB Arginine degradat 97.8 7.1E-05 1.5E-09 84.5 9.9 139 83-245 4-185 (553)
79 KOG2276 Metalloexopeptidases [ 97.6 0.00058 1.3E-08 76.7 12.7 141 85-246 14-179 (473)
80 PF05343 Peptidase_M42: M42 gl 97.0 0.0011 2.5E-08 73.3 7.0 48 197-246 132-179 (292)
81 COG4310 Uncharacterized protei 96.6 0.015 3.3E-07 63.6 10.8 144 178-339 177-355 (435)
82 COG2195 PepD Di- and tripeptid 96.3 0.044 9.6E-07 63.5 13.6 49 198-246 143-192 (414)
83 KOG2657 Transmembrane glycopro 96.2 0.024 5.2E-07 65.7 10.0 161 161-323 156-374 (596)
84 COG1473 AbgB Metal-dependent a 95.2 0.26 5.6E-06 57.0 13.8 114 99-246 21-149 (392)
85 PF04114 Gaa1: Gaa1-like, GPI 89.3 1.1 2.3E-05 53.8 8.1 76 161-246 2-77 (504)
86 PRK02256 putative aminopeptida 76.7 3.5 7.5E-05 48.9 5.2 45 195-243 256-300 (462)
87 KOG3566 Glycosylphosphatidylin 71.4 27 0.00057 42.2 10.5 75 161-246 119-193 (617)
88 PRK02813 putative aminopeptida 58.8 7.9 0.00017 45.5 3.3 41 196-241 231-274 (428)
89 PRK12821 aspartyl/glutamyl-tRN 56.5 3.5E+02 0.0076 32.2 15.7 34 554-588 315-350 (477)
90 PTZ00371 aspartyl aminopeptida 49.2 18 0.0004 43.0 4.2 49 196-244 248-297 (465)
91 PF10190 Tmemb_170: Putative t 42.9 2.4E+02 0.0053 26.9 9.7 49 395-444 32-80 (105)
92 PF05297 Herpes_LMP1: Herpesvi 39.4 9.8 0.00021 41.8 0.0 21 813-833 313-334 (381)
93 TIGR02921 PEP_integral PEP-CTE 33.7 1E+03 0.022 29.5 20.2 27 448-474 148-174 (952)
94 PF12911 OppC_N: N-terminal TM 31.8 51 0.0011 27.0 3.1 35 626-660 9-43 (56)
95 PF10337 DUF2422: Protein of u 27.3 7.8E+02 0.017 29.2 13.2 31 560-590 188-218 (459)
96 PF05656 DUF805: Protein of un 26.1 4.4E+02 0.0096 24.7 9.0 13 545-557 64-76 (120)
97 PRK11007 PTS system trehalose( 25.7 1.2E+03 0.027 28.0 14.7 36 558-593 303-338 (473)
98 PF05297 Herpes_LMP1: Herpesvi 25.4 23 0.00051 39.0 0.0 9 527-535 166-174 (381)
99 PRK08651 succinyl-diaminopimel 25.2 1.1E+02 0.0023 35.1 5.3 56 280-340 338-393 (394)
100 PRK08126 hypothetical protein; 24.1 1.3E+03 0.027 27.5 15.8 53 181-234 355-409 (432)
101 PF03176 MMPL: MMPL family; I 24.1 1E+03 0.022 26.5 16.0 33 410-446 172-204 (333)
102 PRK09824 PTS system beta-gluco 23.8 1.5E+03 0.032 28.3 15.8 36 558-593 289-324 (627)
103 PF06781 UPF0233: Uncharacteri 20.6 1.9E+02 0.0042 26.7 4.9 18 52-69 39-56 (87)
104 PRK08596 acetylornithine deace 20.3 1.5E+02 0.0033 34.4 5.3 56 280-340 363-418 (421)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=7.1e-128 Score=1127.05 Aligned_cols=761 Identities=30% Similarity=0.492 Sum_probs=649.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccccCCCCCCccc--cCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHH
Q 002613 40 SAKRSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQ--AGKRGFSEFEAIKHVKALTELGPHPVGSDALD-RALQYV 116 (900)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~~~~--~~~~~fs~erA~~~L~~L~~igpr~~GS~~~~-~a~~yL 116 (900)
+.+|....++..+.++.... ++.+.++++|.|++..+ ..+++|+++||++++++|+++|||++||++|+ .+++|+
T Consensus 10 ~~~r~~~~~~~~~~f~~~~~--~~~~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~i 87 (834)
T KOG2194|consen 10 KRKRNGAPCLAHLIFLLSIA--IVLYLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFI 87 (834)
T ss_pred hhhhccchHHHHHHHHHHHH--HHHHHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHH
Confidence 34444444444444443333 33345566777666444 44789999999999999999999999999997 999999
Q ss_pred HHHHHhhccccCCc-ceEEEEeeeccCCccccccccc--ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC
Q 002613 117 FAAAQKIKETKHWE-VDVEVDFFHAKSGANRLVSGAF--MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA 193 (900)
Q Consensus 117 ~~~l~~ig~~~~~~-~~v~vd~f~~~~g~~~~~gg~~--~~~~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~ 193 (900)
++|+++++++++.+ .++|+|.+.. +|.+ ++++++|++++||++|+.+|+ +.++.++|++|||||||+
T Consensus 88 l~e~~~i~~~~~~~~~~~Evd~q~~--------sg~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt 157 (834)
T KOG2194|consen 88 LKEVNKIRKGSQSDLYDMEVDLQSA--------SGSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPT 157 (834)
T ss_pred HHHHHHHHhhhhcchhhheeceeec--------cceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCC
Confidence 99999999877664 5677776543 3333 678999999999999999984 345569999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc--------------------------c
Q 002613 194 AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ--------------------------A 247 (900)
Q Consensus 194 spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~--------------------------~ 247 (900)
+|||+|||+|||+|||++|++++..+..+|+|+|+||+|||.+|+|||+|++| +
T Consensus 158 ~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQa 237 (834)
T KOG2194|consen 158 GPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQA 237 (834)
T ss_pred CCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEec
Confidence 99999999999999999999999888889999999999999999999999997 5
Q ss_pred CCChhHHHHHHHhcCCCCcchhhhhhhhcCCCCCCCchHHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHH
Q 002613 248 GPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLG 327 (900)
Q Consensus 248 Gp~~~li~~y~~~a~~P~~~~l~~~~f~~g~ips~TD~~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g 327 (900)
||++|+++.|.++++||++++++||+||+|+|||||||++|++|+|+||+|+|+..|++.|||++|.++++.++++||+|
T Consensus 238 gp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tG 317 (834)
T KOG2194|consen 238 GPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTG 317 (834)
T ss_pred CCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhh
Confidence 67669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccCCCCCCCeEEeeccCceEEEEechhHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 002613 328 ENMLAFLLQAASSTSLPKGNAMEKEGKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVS 407 (900)
Q Consensus 328 ~~~l~lv~~la~s~~l~~~~~~~~~~~~~~~~~VyFD~~G~~~v~y~~~~~~~l~~~v~~~~lll~~~sl~~~~~~~l~~ 407 (900)
+|++++++.++|+ ++.+ .++.+++ +||||++|++|+.|+++++++||+.++ +.++ ....+.+.+.+++
T Consensus 318 en~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~ 385 (834)
T KOG2194|consen 318 ENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGK 385 (834)
T ss_pred hHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhh
Confidence 9999999999999 5542 3456677 999999999999999999999993322 2222 3344544446889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC
Q 002613 408 LALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQL 487 (900)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~igLy~~pa~~g~~~~~~l~~~~~~~~~~~~~~~~~~l 487 (900)
++++|+.+++++++++++++++|++++.++ .+|+||++||+++|+|.||+++|+.+++.++... .+ +.++
T Consensus 386 f~~~~~~~i~s~~~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~----~~-----~~~~ 455 (834)
T KOG2194|consen 386 FILACLLQILSIVVAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKR----SK-----RHSL 455 (834)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhh----cc-----cccc
Confidence 999999999999999999999999999994 6999999999999999999999999999873211 11 1111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q 002613 488 SPIVQADLIKLEAERWLFKAGFLQWLILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLA 567 (900)
Q Consensus 488 ~~~~~~~~~~l~~~~~~~~a~~~~w~ll~i~~t~~~i~SaY~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 567 (900)
..++.+++++|+ +|++|++++|+++|||+|++++|+++|+++ +++++..++|.++..|..++++||+
T Consensus 456 --------~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~ 522 (834)
T KOG2194|consen 456 --------EYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQV 522 (834)
T ss_pred --------chhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeeh
Confidence 113556677776 788899999999999999999999999999 5677888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q 002613 568 VPVLVSAGNFIRLANVIVAIVVRFDRNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSL 647 (900)
Q Consensus 568 ~P~l~~~~~~~~~~~v~ip~~gR~g~~~~~~P~~l~d~iIa~~~a~~~~l~~~~l~P~i~~~~~~~~i~~~l~~v~~~~~ 647 (900)
.|+.+.+|.+++++.+|+|||||+|.+. ||| .+||.++++++.+.++|++|++|+||+++.++.+++.++.+++
T Consensus 523 ~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~ 596 (834)
T KOG2194|consen 523 GPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVIL 596 (834)
T ss_pred HhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999755 996 9999999999999999999999999999999998988888888
Q ss_pred HHHhhCCCCCCCCCC-ccceEEEEEEecCCCCCCC---CCCCceeeccccCCC--------CchhHH---HhccCccccC
Q 002613 648 ILVLSGTVPPFSEDT-ARAVNVVHVVDASGKFGGK---QEPSSFIALYSTTPG--------KLTKEV---EQIKEGFVCG 712 (900)
Q Consensus 648 ~~~~~~~~fPf~~~~-~~r~~~~h~~~~~~~~~~~---~d~~~~~~l~~~~~~--------~l~~~~---~~c~~e~~Cg 712 (900)
.+++|.++|||+.++ +||++++|++|+.+++.+. +|+++++...|.... ++++++ .+|+.+++||
T Consensus 597 ~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 676 (834)
T KOG2194|consen 597 IIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCG 676 (834)
T ss_pred HHHhcCCcCCccccccceeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCC
Confidence 778899999999875 5799999999999887766 788888887765532 334444 5689999999
Q ss_pred CccccccccccccceeeeecCCCCccCCCCCC-------cccccccccccccccccCCCceEEEEEEecCCCeEEEEEec
Q 002613 713 RDNVVDFVTLSMEYGCLTYDGTEGGWSQSDVP-------TIHVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA 785 (900)
Q Consensus 713 ~~~~~~~~~~p~y~~~~~~~~~~~~Wlp~~~P-------~l~~~~~~~~~~~~k~~~~~~~~r~~f~~~g~~~~sl~I~p 785 (900)
+ |+|+ |.+.+.+++|+|+++| .+.+++|+ . .++++.|++|++.|++||++||+|
T Consensus 677 ~---------p~y~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~-------~-~~~~~~r~~~~i~~~d~~s~~i~p 737 (834)
T KOG2194|consen 677 M---------PVYN--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKT-------S-LDNGNLRYEFSITGTDHISLFISP 737 (834)
T ss_pred c---------eeee--ccccCccceEecCCccccCCCCceEEEeecc-------c-cCCCceEEEEEEeccCceEEEEEe
Confidence 9 7997 9999999999999876 45555554 3 446689999999999999999999
Q ss_pred ---eeecceeeccCCcccccCCcCCCCCCcEEEEEEcC-CCCceEEEEEEEeccCCcccccccccccCCCCeEEEe----
Q 002613 786 ---EEIEDFTFKEGSEELVPRDEKSGMDGWHIIQFSGG-KNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR---- 857 (900)
Q Consensus 786 ---~~i~~WSf~~~~~~~~~~~~~~~~~~~~~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~---- 857 (900)
+++.+|||.++ + ..+ + ..+|+||++|| ++.|++||||+++. ++++++| +|++
T Consensus 738 ~~d~~~~~wsf~~~---~--~~~--~-~~~~~i~~~yg~~~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h 797 (834)
T KOG2194|consen 738 LNDVKVLDWSFTTS---P--LTE--N-KTPYHIYFSYGLDSTPLNFWLELEKE-----------EGVTDVP-FKLGVSAH 797 (834)
T ss_pred cCCceEEEEeccCC---c--ccc--c-CCceEEEEEeecCCCCceEEEEEeec-----------cCccCCc-eEEeeeee
Confidence 59999999644 4 333 2 22699999999 89999999999998 5688888 8888
Q ss_pred --ccccCCCHHHHHHHhcCCCcccccCCCCCcchhhh
Q 002613 858 --TDFDRLTPKTERVLSKLPAWCSLFGKSTSPQTLSF 892 (900)
Q Consensus 858 --~~~~~~t~~~~~fl~~fP~wa~~~g~~~s~~~~~~ 892 (900)
+|.+++||++++|+++||+||..++|++|+....|
T Consensus 798 ~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 798 YIHDLELITPEYKEFLETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred eccchhhcCHHHHHHHHhCCchhhccccccchhheeC
Confidence 47889999999999999999999999999987654
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.91 E-value=4.4e-23 Score=228.20 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~-igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+-|.+++++|+. +++|.+||+++.++++||.++++++| ++++.+.|....... ...+. .........|
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG------~~v~~q~f~~~~~~~-~~~g~---~~~~~~~g~n 99 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMG------YQSDIRTFNSRYIYT-ARDNR---KNWHNVTGST 99 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCC------CceEeeeccccceee-ccccc---ccccCCccce
Confidence 4556778888876 89999999999999999999999999 456555443210000 00000 0001124689
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeeccccc--------------CCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEe
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVF--------------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFN 230 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~--------------~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~ 230 (900)
||++++|+ .++.|+++||+|||+ ..|||.||++|||+|||++|.|++. +++++|+|+++
T Consensus 100 VIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~ 172 (346)
T PRK10199 100 VIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVAT 172 (346)
T ss_pred EEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEE
Confidence 99999885 346899999999985 2479999999999999999999863 57889999999
Q ss_pred cCCCCCCcchHHHHHcc---------------------------CCC-h-hH-------HHHHHHhcCCCCcc-hhhhhh
Q 002613 231 TGEEEGLNGAHSFVTQA---------------------------GPH-P-WA-------VENFAAAAKYPSGQ-VTAQDL 273 (900)
Q Consensus 231 ~aEE~gL~GS~~fi~~~---------------------------Gp~-~-~l-------i~~y~~~a~~P~~~-~l~~~~ 273 (900)
++||.|+.||+.|+++. |.+ + .+ +...++....+... .-.+..
T Consensus 173 ~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~~~~~ 252 (346)
T PRK10199 173 SGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPGLNKN 252 (346)
T ss_pred CCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCCcccc
Confidence 99999999999999871 100 0 00 00111111110000 000111
Q ss_pred hhcCCCCCCCchHHHhhcCCCcEEEEeec-------------------CCCCCCC-CCCCCcCCCCHH-------HHHHH
Q 002613 274 FASGAITSATDFQVYKEVAGLSGLDFAYT-------------------DKSAVYH-TKNDKLDLLKPG-------SLQHL 326 (900)
Q Consensus 274 f~~g~ips~TD~~~F~~~~giPgld~a~~-------------------~~~~~YH-T~~Dt~~~i~~~-------slq~~ 326 (900)
|..| ....|||.+|.+ .|||.+.+... ..+..+| |.+|+.++++.. .+...
T Consensus 253 ~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~~~ 330 (346)
T PRK10199 253 YPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDV 330 (346)
T ss_pred ccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHHhH
Confidence 2122 224699999999 99999987422 1245789 899999998872 45567
Q ss_pred HHHHHHHHHHHHcC
Q 002613 327 GENMLAFLLQAASS 340 (900)
Q Consensus 327 g~~~l~lv~~la~s 340 (900)
.+.++.++.+||++
T Consensus 331 ~~~~~~~~~~~~~~ 344 (346)
T PRK10199 331 VRIMLPLVKELAKA 344 (346)
T ss_pred HHHHHHHHHHHhcc
Confidence 77889999999886
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.90 E-value=4e-24 Score=217.03 Aligned_cols=144 Identities=33% Similarity=0.527 Sum_probs=106.5
Q ss_pred CEEEEEeeccccc------CCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc-------
Q 002613 180 NAILVSSHIDTVF------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ------- 246 (900)
Q Consensus 180 ~~vLl~aH~DSv~------~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~------- 246 (900)
++|+++|||||+. .++||+|||+|||+|||+||.|++.+.+++++|+|+|+++||.|+.||++|+++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 3799999999998 899999999999999999999999777889999999999999999999999964
Q ss_pred -----------cC-C------C---hhHHHHHHHhcCCCCcchhhhhhhhcCCCCCCCchHHHhhcCCCcEEEEeecC-C
Q 002613 247 -----------AG-P------H---PWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD-K 304 (900)
Q Consensus 247 -----------~G-p------~---~~li~~y~~~a~~P~~~~l~~~~f~~g~ips~TD~~~F~~~~giPgld~a~~~-~ 304 (900)
.| + . ++.++.+.+....+.......+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 11 1 1 1222333322222323323233332234556899999997 999999999887 7
Q ss_pred CCCCCCCCCCcCCCCHHHHH
Q 002613 305 SAVYHTKNDKLDLLKPGSLQ 324 (900)
Q Consensus 305 ~~~YHT~~Dt~~~i~~~slq 324 (900)
.+.|||+.||++++++++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=216.00 Aligned_cols=181 Identities=23% Similarity=0.347 Sum_probs=141.3
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHh---ccCCCCCcEEEEEecCCC
Q 002613 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEE 234 (900)
Q Consensus 158 ~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~---~~~~p~~~Iiflf~~aEE 234 (900)
.-.++.|||++|+|. ++++++|+|++|.||| .+||.|+++|+|.|+|++|.+.. .+++|+|+|+|++|||||
T Consensus 334 ~~~ki~NIig~I~Gs---~epD~~ViigahrDSw--~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeE 408 (702)
T KOG2195|consen 334 EETKIQNIIGKIEGS---EEPDRYVIIGAHRDSW--TFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEE 408 (702)
T ss_pred eeeeeeeEEEEEecC---cCCCeEEEEecccccc--ccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchh
Confidence 346899999999996 5799999999999999 66899999999999999999865 679999999999999999
Q ss_pred CCCcchHHHHHc-------------------cC-------CChhHHHHHHH---hcCCCCcchhhhhhhhcCCCCCCCch
Q 002613 235 EGLNGAHSFVTQ-------------------AG-------PHPWAVENFAA---AAKYPSGQVTAQDLFASGAITSATDF 285 (900)
Q Consensus 235 ~gL~GS~~fi~~-------------------~G-------p~~~li~~y~~---~a~~P~~~~l~~~~f~~g~ips~TD~ 285 (900)
.|+.||..|+++ .| .+|.+-+...+ ..+.|....... .......+|||
T Consensus 409 fGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~---~v~~~g~~Sd~ 485 (702)
T KOG2195|consen 409 FGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN---RVLSLGGGSDY 485 (702)
T ss_pred ccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCccHHHHHHHHHhccCCCCccccce---eEeccCCCCcc
Confidence 999999999997 12 13444433332 234443322211 11123789999
Q ss_pred HHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCC----CHH--HHHHHHHHHHHHHHHHHcCCCCCCC
Q 002613 286 QVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL----KPG--SLQHLGENMLAFLLQAASSTSLPKG 346 (900)
Q Consensus 286 ~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i----~~~--slq~~g~~~l~lv~~la~s~~l~~~ 346 (900)
..|..+.|||+++++|....+.|||.+||++.+ |+. .+..++......+..+++++.+|.+
T Consensus 486 ~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 486 ASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred hhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 999999999999999999889999999996654 443 4555677777777788886666643
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=168.06 Aligned_cols=226 Identities=19% Similarity=0.291 Sum_probs=168.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccc
Q 002613 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (900)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~ 161 (900)
+.-+-.|.++.|..|- -||.+||+++.++++||.+.++.++ ..+|.|.|..... .-+.+
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~tp-------------~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNTP-------------LGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccCc-------------ceeee
Confidence 3456788888877775 4899999999999999999999997 6888888775321 12357
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccCC----CCCCCChhHHHHHHHHHHHHHhc----cCCCCCcEEEEEecCC
Q 002613 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----EGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLFNTGE 233 (900)
Q Consensus 162 ~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~s----pGA~DdgsGVA~mLElaR~l~~~----~~~p~~~Iiflf~~aE 233 (900)
..|||+++.+. .+.++++.|||||.-.. -||.|.+..||.||+++|.+.+. ...++-++.++|+|||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 89999999764 56789999999997422 48999999999999999999762 2345678999999999
Q ss_pred C--------CCCcchHHHHHc--cCC-Ch-------------hHHHHHHHhcCCCCc-------c-------hhh-----
Q 002613 234 E--------EGLNGAHSFVTQ--AGP-HP-------------WAVENFAAAAKYPSG-------Q-------VTA----- 270 (900)
Q Consensus 234 E--------~gL~GS~~fi~~--~Gp-~~-------------~li~~y~~~a~~P~~-------~-------~l~----- 270 (900)
| ..++||++.+++ +++ ++ .+.+.+. +++|.- + .+-
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllg--a~~p~f~~~~~~t~~wF~Rl~~iE~~l~~ 257 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLG--APNPTFYNFFPNTDRWFHRLQSIEGELAL 257 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhc--CCChhHhhcCcchHHHHHHHHHHHHHHHH
Confidence 8 368999999988 222 11 1222221 122211 0 000
Q ss_pred ----------hhhhhcCCCC--CCCchHHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 002613 271 ----------QDLFASGAIT--SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 336 (900)
Q Consensus 271 ----------~~~f~~g~ip--s~TD~~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~ 336 (900)
...|+.|..- -+.||.+|.+ .|+|-+.+.-..-..+|||+.|+..++|..+..|++..+--++.+
T Consensus 258 ~g~l~s~r~~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~e 334 (338)
T KOG3946|consen 258 LGLLASHRLPPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVAE 334 (338)
T ss_pred HHHHHhccCCchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHHH
Confidence 1124443332 2689999998 999999998777778999999999999999999998877766654
No 6
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.54 E-value=4.9e-14 Score=161.77 Aligned_cols=126 Identities=20% Similarity=0.144 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccc
Q 002613 87 FEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (900)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y 159 (900)
.|.++.|++|++||. |...|++..++++||.++++++| +++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEc-----------------------
Confidence 588999999999853 66779999999999999999999 566663
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCC---
Q 002613 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG--- 236 (900)
Q Consensus 160 ~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~g--- 236 (900)
...|++++++|+ ..+.|.|+++||+|||+.+ |.-|+..||++.||++|.|++.+.+|+++|.+++|..||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~g-G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVNG-GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCCC-CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 457999999996 3456899999999999987 89999999999999999999998899999999999999987
Q ss_pred --CcchHHHHHc
Q 002613 237 --LNGAHSFVTQ 246 (900)
Q Consensus 237 --L~GS~~fi~~ 246 (900)
+.||+++..+
T Consensus 129 ~~~~Gs~~~~g~ 140 (406)
T TIGR03176 129 YVFWGSKNIFGL 140 (406)
T ss_pred cccccHHHHhCC
Confidence 9999999753
No 7
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.44 E-value=3.3e-13 Score=155.80 Aligned_cols=171 Identities=24% Similarity=0.290 Sum_probs=116.3
Q ss_pred ccceEEEEEcCCCC-------CcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 161 DLNHIVLRIQPKYA-------SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 161 ~~~NVI~~i~g~~~-------~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
+..|+++++++... ....++.+++++|+|+++.+|||.|||+|+|++||++|+|++. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 45566666655310 1246789999999999999999999999999999999999984 49999999999999
Q ss_pred CCCCcchHHHHHcc-----------------CC-C-hhHHHHHHHhcCCCCcc------hhhhhhh--hcCCCCCCCchH
Q 002613 234 EEGLNGAHSFVTQA-----------------GP-H-PWAVENFAAAAKYPSGQ------VTAQDLF--ASGAITSATDFQ 286 (900)
Q Consensus 234 E~gL~GS~~fi~~~-----------------Gp-~-~~li~~y~~~a~~P~~~------~l~~~~f--~~g~ips~TD~~ 286 (900)
|.||.||+.|+.+. |. + .--...|......+... .....+- ........+||.
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~ 340 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPSTVQDFDPRSDHY 340 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccccccCCCCCCCcch
Confidence 99999999999981 10 0 00000111111110000 0000010 112234579999
Q ss_pred HHhhcCCCcEEEEeecCCC-----CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 002613 287 VYKEVAGLSGLDFAYTDKS-----AVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 336 (900)
Q Consensus 287 ~F~~~~giPgld~a~~~~~-----~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~ 336 (900)
.|.+ .|+|++.+...... ..+||..|+ ++ +..++++.+..+-+.+..
T Consensus 341 ~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~ 392 (435)
T COG2234 341 PFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVL 392 (435)
T ss_pred hhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhh
Confidence 9998 99999987754433 479999999 88 888888877555444433
No 8
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.43 E-value=1.7e-12 Score=149.42 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHhcC--C-----CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccc
Q 002613 83 GFSEFEAIKHVKALTELG--P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 155 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~ig--p-----r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~ 155 (900)
.++.+|.+++++.|.+|| | |...|.++.++++||.+++++.| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~------------------- 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVD------------------- 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEC-------------------
Confidence 456779999999999985 3 66788888999999999999999 455552
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC
Q 002613 156 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 235 (900)
Q Consensus 156 ~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~ 235 (900)
...|++++++|. +...+.|++++|+||||.+ |..|+..||+++|+++|.|++.+.+++++|.++++.+||.
T Consensus 61 -----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~g-g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 61 -----AMGNLFARRAGR---DPDAAPVMTGSHADSQPTG-GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred -----CCCCEEEEecCC---CCCCCeEEEEecccCCCCC-ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 234999999875 2345899999999999876 7789999999999999999998888999999999999998
Q ss_pred C-----CcchHHHHH
Q 002613 236 G-----LNGAHSFVT 245 (900)
Q Consensus 236 g-----L~GS~~fi~ 245 (900)
+ +.||+.+..
T Consensus 132 ~~f~~~~~Gs~~~~g 146 (414)
T PRK12891 132 SRFAPSMVGSGVFFG 146 (414)
T ss_pred CcCCcccccHHHHhC
Confidence 5 679988854
No 9
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.42 E-value=1.9e-12 Score=148.68 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELG------PHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (900)
Q Consensus 85 s~erA~~~L~~L~~ig------pr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~ 158 (900)
+.+|+++++.+|.+|+ .|+..|.++.++++||.++++++| ++++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~---------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAG------LEVRRD---------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEc----------------------
Confidence 4689999999999875 356779888899999999999998 455442
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC---
Q 002613 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE--- 235 (900)
Q Consensus 159 y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~--- 235 (900)
...|++++++|+ ..+.+.|++++|+|+||.+ |+.|+.+|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 --~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~~-g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~ 132 (414)
T PRK12890 59 --AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPNG-GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRF 132 (414)
T ss_pred --CCCcEEEEeCCC---CCCCCEEEEeCcccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccccccc
Confidence 235999999874 2345789999999999875 8899999999999999999988778899999999999997
Q ss_pred --CCcchHHHHHc
Q 002613 236 --GLNGAHSFVTQ 246 (900)
Q Consensus 236 --gL~GS~~fi~~ 246 (900)
++.||+.+...
T Consensus 133 ~~~~~G~~~~~~~ 145 (414)
T PRK12890 133 GPSMIGSRALAGT 145 (414)
T ss_pred CCccccHHHHHcc
Confidence 67899888653
No 10
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.42 E-value=1.3e-12 Score=156.54 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHhhccccCCcc-eEEEEeeeccCCcccccccccc
Q 002613 85 SEFEAIKHVKALTELGP----------HPVGSDALDRALQYVFAAAQKIKETKHWEV-DVEVDFFHAKSGANRLVSGAFM 153 (900)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~-~v~vd~f~~~~g~~~~~gg~~~ 153 (900)
-.+|.++.+..|++|+. |...|++..++++||.++++++| + ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~G------l~~v~~D----------------- 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCG------FDEVHID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcC------CCeeeEC-----------------
Confidence 47899999999999753 33458899999999999999999 4 55553
Q ss_pred cccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 154 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 154 ~~~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
...|++++++|+ ....+.|++++|+|||+.+ |.-|+..||+++||++|.|.+.+.+++++|.+++|.+|
T Consensus 236 -------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~g-G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~E 304 (591)
T PRK13590 236 -------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRNG-GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEE 304 (591)
T ss_pred -------CCCCEEEEecCC---CCCCCeEEEecccccCCCC-CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 468999999986 2345889999999999986 88999999999999999999988888999999999999
Q ss_pred CC-----CCcchHHHHH
Q 002613 234 EE-----GLNGAHSFVT 245 (900)
Q Consensus 234 E~-----gL~GS~~fi~ 245 (900)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13590 305 EGQRYKATFLGSGALIG 321 (591)
T ss_pred ccccCCccccchHHHhC
Confidence 97 5999998753
No 11
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.41 E-value=1.3e-12 Score=156.53 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHhcC-----C-----CCCCCHHHHHHHHHHHHHHHhhccccCCcce-EEEEeeeccCCccccccccc
Q 002613 84 FSEFEAIKHVKALTELG-----P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAF 152 (900)
Q Consensus 84 fs~erA~~~L~~L~~ig-----p-----r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~-v~vd~f~~~~g~~~~~gg~~ 152 (900)
-..+|.++.+..|++|| + |...|+++.++++|+.++++++| ++ +++|
T Consensus 178 ~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D---------------- 235 (591)
T PRK13799 178 AIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEID---------------- 235 (591)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeEC----------------
Confidence 46889999999999986 1 66779999999999999999999 55 7663
Q ss_pred ccccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecC
Q 002613 153 MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 232 (900)
Q Consensus 153 ~~~~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~a 232 (900)
.+.||+++++|+ +.+.|.|++++|+|||+.+ |.-|+..||+++||++|.|.+.+.+++++|.++.|.+
T Consensus 236 --------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~~g-G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~ 303 (591)
T PRK13799 236 --------AVGNVVGRYKAA---DDDAKTLITGSHYDTVRNG-GKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAE 303 (591)
T ss_pred --------CCCCEEEEcCCC---CCCCCeEEEeccccccCCC-CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecC
Confidence 468999999886 2456899999999999886 8889999999999999999999999999999999999
Q ss_pred CCC-----CCcchHHHHH
Q 002613 233 EEE-----GLNGAHSFVT 245 (900)
Q Consensus 233 EE~-----gL~GS~~fi~ 245 (900)
||. ++.||+.+..
T Consensus 304 EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 304 EEGQRFKATFLGSGALIG 321 (591)
T ss_pred CCccCCCccccchHHHhC
Confidence 998 7999999973
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.40 E-value=2.5e-12 Score=147.28 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccc
Q 002613 87 FEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (900)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y 159 (900)
+|.+++|..++++|. |...|.++.++++||.+++++.| ++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G------~~~~~~----------------------- 51 (401)
T TIGR01879 1 QRLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAG------LEVRFD----------------------- 51 (401)
T ss_pred ChHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCC------CEEEEe-----------------------
Confidence 378899999998854 44558888899999999999998 455542
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC----
Q 002613 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE---- 235 (900)
Q Consensus 160 ~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~---- 235 (900)
+..||+++++|. ..+.+.|++++|+||||.+ |.-|+..|++++|+++|.|++.+.+++++|.|+++.+||.
T Consensus 52 -~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~g-g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~ 126 (401)
T TIGR01879 52 -EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVNG-GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFP 126 (401)
T ss_pred -cCCcEEEEecCC---CCCCCEEEEecccccCCCC-CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcc
Confidence 235999999875 2235899999999999976 8889999999999999999998888999999999999997
Q ss_pred -CCcchHHHHHc
Q 002613 236 -GLNGAHSFVTQ 246 (900)
Q Consensus 236 -gL~GS~~fi~~ 246 (900)
++.||+.++.+
T Consensus 127 ~~~~Gs~~~~~~ 138 (401)
T TIGR01879 127 YGMWGSRNMVGL 138 (401)
T ss_pred cccccHHHHhcc
Confidence 78999999764
No 13
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.35 E-value=1.1e-11 Score=142.64 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
.+.+++++++++|+++|+ |+..|.++.++.+||.++++++| ++++++
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~-------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVD-------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 457899999999999865 66778888899999999999998 455441
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC-
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE- 235 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~- 235 (900)
...|++++++|. ..+.+.|++++|+|+||.+ |..|+..|+|+|+++++.|.+.+.+++++|+|+++.+||.
T Consensus 58 ----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~~-g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 58 ----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPNG-GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred ----CCCcEEEEecCC---CCCCCEEEEecCccCCCCC-CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence 235999999763 1235789999999999874 7789999999999999999988777889999999999998
Q ss_pred ----CCcchHHHHHc
Q 002613 236 ----GLNGAHSFVTQ 246 (900)
Q Consensus 236 ----gL~GS~~fi~~ 246 (900)
|+.|++.++.+
T Consensus 130 ~~g~~~~G~~~~~~~ 144 (413)
T PRK09290 130 RFGPAMLGSRVFTGA 144 (413)
T ss_pred cccCccccHHHHHcc
Confidence 57889888753
No 14
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.30 E-value=2.9e-11 Score=138.65 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccc
Q 002613 84 FSEFEAIKHVKALTELGP------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 157 (900)
Q Consensus 84 fs~erA~~~L~~L~~igp------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~ 157 (900)
.+.+|+++.+++|++++. |+..|.++.++++||.++|+++| ++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~--------------------- 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAG------LAVRID--------------------- 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcC------CEEEEc---------------------
Confidence 467899999999999864 35567777899999999999998 455442
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC--
Q 002613 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE-- 235 (900)
Q Consensus 158 ~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~-- 235 (900)
+..|++++++|+ .+.+.|++++|+|+||.+ |-.|+..|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ---~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~~-g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 131 (412)
T PRK12892 60 ---GIGNVFGRLPGP----GPGPALLVGSHLDSQNLG-GRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSR 131 (412)
T ss_pred ---CCCcEEEEecCC----CCCCeEEEEccccCCCCC-CcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccc
Confidence 235999999875 234789999999999875 6678888999999999999998888899999999999998
Q ss_pred ---CCcchHHHHHc
Q 002613 236 ---GLNGAHSFVTQ 246 (900)
Q Consensus 236 ---gL~GS~~fi~~ 246 (900)
++.||+.++.+
T Consensus 132 ~~~~~~Gs~~~~~~ 145 (412)
T PRK12892 132 FTPGFLGSRAYAGR 145 (412)
T ss_pred ccCccccHHHHHcC
Confidence 57899999853
No 15
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.29 E-value=3.5e-11 Score=138.13 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
.+.++++++|+.|.++.. |..+|.++.++.+||.++|+++| ++++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAG------LTVSVD-------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 457899999999999762 34557777899999999999998 455442
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCC
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~g 236 (900)
...|++++++|. ..+++.|++++|+|+||.+ |.-|+..|+|++|++++.|.+.+.+++.+|+|+|+.+||.|
T Consensus 61 ----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~~-g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 61 ----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPTG-GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ----CCCcEEEEeCCC---CCCCCEEEEEecccCCCCC-CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence 234999999874 1245789999999999864 77899999999999999999887778999999999999986
Q ss_pred -----CcchHHHHHc
Q 002613 237 -----LNGAHSFVTQ 246 (900)
Q Consensus 237 -----L~GS~~fi~~ 246 (900)
+.|+..+..+
T Consensus 133 ~~~~~~~G~~~~~~~ 147 (412)
T PRK12893 133 RFAPAMLGSGVFTGA 147 (412)
T ss_pred ccccccccHHHHhCc
Confidence 7899888753
No 16
>PRK09133 hypothetical protein; Provisional
Probab=99.25 E-value=9.8e-11 Score=136.99 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEE-EEeeeccCCccccccccccccccccc
Q 002613 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVE-VDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~-vd~f~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
+++..+++.+.|++|.+| |-..+..++.++.+||.++++++|. +++ ++.+.. ..
T Consensus 32 ~~~~~~~~~~~l~~Lv~i-~S~s~~~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~------------------~~ 86 (472)
T PRK09133 32 PTADQQAARDLYKELIEI-NTTASTGSTTPAAEAMAARLKAAGF------ADADIEVTGP------------------YP 86 (472)
T ss_pred cchhHHHHHHHHHHHhcc-CCCCCCcchHHHHHHHHHHHHHcCC------CceEEEeccC------------------CC
Confidence 568899999999999997 3333233456899999999999983 322 221110 12
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCC
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~ 220 (900)
+..|+++++.|+ .+.+.|++++|+|+||. +.|+.|+++|+|++|++++.|.+.+..
T Consensus 87 ~~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~ 162 (472)
T PRK09133 87 RKGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFK 162 (472)
T ss_pred CceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCC
Confidence 457999999775 23467999999999973 479999999999999999999887777
Q ss_pred CCCcEEEEEecCCC-CCCcchHHHHHc
Q 002613 221 FKNAVIFLFNTGEE-EGLNGAHSFVTQ 246 (900)
Q Consensus 221 p~~~Iiflf~~aEE-~gL~GS~~fi~~ 246 (900)
++++|.|++..+|| .|..|++.++.+
T Consensus 163 ~~~~i~~~~~~dEE~~g~~G~~~l~~~ 189 (472)
T PRK09133 163 PKRDIILALTGDEEGTPMNGVAWLAEN 189 (472)
T ss_pred CCCCEEEEEECccccCccchHHHHHHH
Confidence 89999999999999 788999988764
No 17
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.24 E-value=1.2e-10 Score=133.82 Aligned_cols=131 Identities=21% Similarity=0.304 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~ 163 (900)
..+++.+.|++|.+| |-..+.. +++++.+||.++|+++| ++++++.... ....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G------~~v~~~~~~~-------------------~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALG------AKVERAPTPP-------------------SAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCC------CeEEEEccCC-------------------CCCC
Confidence 345788888889887 3333333 34689999999999998 4555432100 1246
Q ss_pred eEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEE
Q 002613 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (900)
Q Consensus 164 NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-----------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Ii 226 (900)
|++++++|. +.+.|++++|+|+||. ++|+.|+.+|++++|++++.|.+.+.+++.+|+
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999763 3468999999999974 478999999999999999999987767778999
Q ss_pred EEEecCCCCCCcchHHHHHc
Q 002613 227 FLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 227 flf~~aEE~gL~GS~~fi~~ 246 (900)
|+|..+||.|..|++.++++
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~ 183 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAE 183 (410)
T ss_pred EEEECCcccCCccHHHHHHH
Confidence 99999999998999998864
No 18
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.19 E-value=2.8e-10 Score=131.27 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 87 FEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
+++.+.+++|.+| |-+.+. .+.+++.+||.++|+++| ++++.+. . +....||
T Consensus 13 ~~~~~~l~~Lv~i-~S~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~~--~------------------~~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRF-ETPAPPARNTNEAQEFIAEFLRKLG------FSVDKWD--V------------------YPNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcC-CCCCCCchhHHHHHHHHHHHHHHCC------CeEEEEE--c------------------cCCCceE
Confidence 6788899999986 322222 234578999999999998 4454421 1 0134699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
+++++|+. ....+.|++++|+|+||. +.|+.|+.+|+|++|++++.|.+.+.+++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99998741 112367999999999864 3799999999999999999999887778899
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|+|+|..+||.|..|++.++.+
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~ 165 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCER 165 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhc
Confidence 9999999999998999988764
No 19
>PRK07473 carboxypeptidase; Provisional
Probab=99.17 E-value=4e-10 Score=128.25 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccccc
Q 002613 84 FSEFEAIKHVKALTELGPHPVGSDAL-DRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~~-~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
++.+++.+.|++|.+|.. +.+.+++ .++.+||.++|+++| ++++.+ ... . ...
T Consensus 8 ~~~~~~~~~l~~Lv~i~S-~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~--~~~------~-----------~~~ 61 (376)
T PRK07473 8 FDSEAMLAGLRPWVECES-PTWDAAAVNRMLDLAARDMAIMG------ATIERI--PGR------Q-----------GFG 61 (376)
T ss_pred cCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHcC------CeEEEe--cCC------C-----------CCC
Confidence 668899999999999743 3444443 578899999999998 455442 110 0 013
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcE
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (900)
Q Consensus 163 ~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-----------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~I 225 (900)
.|+++++++. ....+.|++++|+|+|+. ++|+.|+.+|+|+||.+++.|.+.+.+++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 5899998653 134578999999999952 48999999999999999999988766667789
Q ss_pred EEEEecCCCCCCcchHHHHHc
Q 002613 226 IFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 226 iflf~~aEE~gL~GS~~fi~~ 246 (900)
.|+|+.+||.|..|++.++.+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~ 159 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEA 159 (376)
T ss_pred EEEEeCCcccCCccHHHHHHH
Confidence 999999999999999988763
No 20
>PRK07906 hypothetical protein; Provisional
Probab=99.14 E-value=3.1e-10 Score=130.93 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEE
Q 002613 90 IKHVKALTELGPHPV---GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (900)
Q Consensus 90 ~~~L~~L~~igpr~~---GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI 166 (900)
.+.|++|.+|..-.. .+++++++++||.++++++| ++++.+. .. .+..|++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G------~~~~~~~--~~------------------~~~~nv~ 55 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVG------LEPTYLE--SA------------------PGRANVV 55 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCC------CCeEEee--cC------------------CCceEEE
Confidence 467888887633211 12456789999999999999 4454431 10 1357999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEE
Q 002613 167 LRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (900)
Q Consensus 167 ~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Ii 226 (900)
++++|+ ....+.|++++|+|+||. +.|+.||+.|++++|++++.+.+.+..++++|.
T Consensus 56 ~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~ 132 (426)
T PRK07906 56 ARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLV 132 (426)
T ss_pred EEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEE
Confidence 999774 234468999999999975 369999999999999999999988778899999
Q ss_pred EEEecCCCCC-CcchHHHHHc
Q 002613 227 FLFNTGEEEG-LNGAHSFVTQ 246 (900)
Q Consensus 227 flf~~aEE~g-L~GS~~fi~~ 246 (900)
|+|+.+||.| ..|++.++++
T Consensus 133 ~~~~~dEE~g~~~g~~~l~~~ 153 (426)
T PRK07906 133 FAFVADEEAGGTYGAHWLVDN 153 (426)
T ss_pred EEEecCcccchhhhHHHHHHH
Confidence 9999999985 4688888753
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.14 E-value=3.4e-10 Score=128.30 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEc
Q 002613 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (900)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~ 170 (900)
+.|++|.++..-...+.++.++++||.++++++| ++++...... + ......|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G------~~~~~~~~~~--------~--------~~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFG------FSTDVIEITD--------D--------RLKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCC------CceEEEecCc--------h--------hcccccceEEecc
Confidence 4677888753211134556799999999999998 4444421110 0 0012236777777
Q ss_pred CCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 002613 171 PKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (900)
Q Consensus 171 g~~~~~~~~~~vLl~aH~DSv~~s---------------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf 229 (900)
|. .+.+.|++.+|+|+||.+ +|+.|+++|+|++|++++.|.+.+.+++.+|+|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 64 245789999999999864 58999999999999999999987767889999999
Q ss_pred ecCCCCCCcchHHHHHc
Q 002613 230 NTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 230 ~~aEE~gL~GS~~fi~~ 246 (900)
+.+||.|..|++.++++
T Consensus 136 ~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR 152 (375)
T ss_pred EcCcccCchhHHHHHHc
Confidence 99999999999998864
No 22
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.14 E-value=4.1e-10 Score=127.61 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
++++.+.|++|.++ |-+. ..+.++++||.++++++| ++++.+.. + ....|+
T Consensus 1 ~~~~~~~l~~Lv~i-~s~s--~~e~~~~~~l~~~l~~~G------~~~~~~~~----------~----------~~~~~l 51 (377)
T PRK08588 1 EEEKIQILADIVKI-NSVN--DNEIEVANYLQDLFAKHG------IESKIVKV----------N----------DGRANL 51 (377)
T ss_pred ChHHHHHHHHHhcC-CCCC--CcHHHHHHHHHHHHHHCC------CceEEEec----------C----------CCCceE
Confidence 36888999999985 3333 345689999999999998 44544211 0 134699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++ |. +.+.|++.+|+|+||. +.|+.|+..|+|++|++++.|.+.+..++.+
T Consensus 52 ~a~~-g~-----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 125 (377)
T PRK08588 52 VAEI-GS-----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGT 125 (377)
T ss_pred EEEe-CC-----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCc
Confidence 9998 42 2378999999999985 3688999999999999999998887778899
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.|+|..+||.|..|++.++++
T Consensus 126 i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 126 IRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred EEEEEEcccccCchhHHHHHhc
Confidence 9999999999998999988864
No 23
>PRK08262 hypothetical protein; Provisional
Probab=99.13 E-value=8.1e-10 Score=129.81 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=102.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccc
Q 002613 81 KRGFSEFEAIKHVKALTELGPHPVGSDA-------LDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFM 153 (900)
Q Consensus 81 ~~~fs~erA~~~L~~L~~igpr~~GS~~-------~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~ 153 (900)
+-.++.+++.+.|++|.++.. +.+.++ ..+..+||.++++++| .+++... .
T Consensus 38 ~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~~L~~~~~~~g------~~~~~~~--~------------- 95 (486)
T PRK08262 38 PVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHAHLEESYPAVH------AALEREV--V------------- 95 (486)
T ss_pred CCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHHHHHHhChhhh------ceeEEEE--E-------------
Confidence 456889999999999998632 233221 1358889999888877 3333321 0
Q ss_pred cccccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-----------------------CCCCCCChhHHHHHHHH
Q 002613 154 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------------AEGAGDCSSCVAVMLEL 210 (900)
Q Consensus 154 ~~~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-----------------------spGA~DdgsGVA~mLEl 210 (900)
+..|+++.++|. ....+.|++.+|+|+||. +.|+.|+.+|+|++|.+
T Consensus 96 -------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A 165 (486)
T PRK08262 96 -------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEA 165 (486)
T ss_pred -------CCccEEEEEECC---CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHH
Confidence 125788888774 123378999999999975 35999999999999999
Q ss_pred HHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHH
Q 002613 211 ARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 211 aR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~ 245 (900)
++.+.+.+.+++.+|.|+|..+||.|..|++.++.
T Consensus 166 ~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~ 200 (486)
T PRK08262 166 AEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAE 200 (486)
T ss_pred HHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHH
Confidence 99999877778899999999999998889988875
No 24
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.10 E-value=5.6e-10 Score=130.96 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
.+|+.+.|++|.++ |++ |.+++++++||.++++++| ++++.+ ...|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLG------LEVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcC------CeEEEe------------------------CCCeE
Confidence 47899999999997 565 5556789999999999998 455542 23599
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccCC------------------------CCCC---CChhHHHHHHHHHHHHHhcc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGAG---DCSSCVAVMLELARAMSQWA 218 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~s------------------------pGA~---DdgsGVA~mLElaR~l~~~~ 218 (900)
+++++|+. +..+.+.|++++|+|+|+.+ +|+. |++.|++++|+++|. .
T Consensus 50 ~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 99998742 11345789999999999853 4553 999999999999875 2
Q ss_pred CCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 219 HGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 219 ~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
..++.+|.++|+.+||.|+.||+.+..+
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChh
Confidence 2345699999999999999999998653
No 25
>PRK07338 hypothetical protein; Provisional
Probab=99.07 E-value=1.5e-09 Score=124.21 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+++.+.|++|.++. -..+. ++.+++.+||.++|+++| +++++....... .+. ..+....+....|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~~~~~---~~~---~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALP------GEIELIPLPPVE---VID---ADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCC------CcEEEecCCccc---ccc---ccccccccCcCCe
Confidence 567778888888863 22222 234689999999999999 344432110000 000 0000011233479
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC-----------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEE
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~-----------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iif 227 (900)
++++++|. .++.|++++|+|+||. ++|+.|+.+|+|++|++++.|.+.+.+++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99999653 2346999999999974 3689999999999999999998876667789999
Q ss_pred EEecCCCCCCcchHHHHHc
Q 002613 228 LFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 228 lf~~aEE~gL~GS~~fi~~ 246 (900)
+|..+||.|..|++.++.+
T Consensus 158 ~~~~dEE~g~~g~~~~~~~ 176 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAE 176 (402)
T ss_pred EEECCcccCChhhHHHHHH
Confidence 9999999998899888775
No 26
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.06 E-value=9.4e-10 Score=123.91 Aligned_cols=127 Identities=26% Similarity=0.299 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEE
Q 002613 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (900)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~ 167 (900)
|.++.+++|.++ | .-|.++.++.+||.++|+++| ++++.+.... .+.+..|+++
T Consensus 1 ~~~~~~~~l~~i-~--s~s~~e~~~~~~l~~~l~~~g------~~~~~~~~~~-----------------~~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQI-D--SESGKEKAILTYLKKQITKLG------IPVSLDEVPA-----------------EVSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeec-C--CCCCcHHHHHHHHHHHHHHcC------CEEEEecccc-----------------ccCCCceEEE
Confidence 467888999886 2 234456689999999999998 4444421100 0123579999
Q ss_pred EEcCCCCCcCCCCEEEEEeecccccC--------------CCCC----CCChhHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 002613 168 RIQPKYASEAAENAILVSSHIDTVFA--------------AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (900)
Q Consensus 168 ~i~g~~~~~~~~~~vLl~aH~DSv~~--------------spGA----~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf 229 (900)
+++|+ .+.+.|++++|+|+|+. +.|+ .|+++|+|++|++++.|.+.+ .++.+|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99775 23478999999999984 3566 799999999999999998765 4678999999
Q ss_pred ecCCCCCCcchHHHHH
Q 002613 230 NTGEEEGLNGAHSFVT 245 (900)
Q Consensus 230 ~~aEE~gL~GS~~fi~ 245 (900)
+.+||.|..|++.+..
T Consensus 130 ~~~EE~g~~G~~~~~~ 145 (361)
T TIGR01883 130 TVKEELGLIGMRLFDE 145 (361)
T ss_pred EcccccCchhHhHhCh
Confidence 9999999999988764
No 27
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=122.15 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHhhccccCCcce-EEEEeeeccCCccccccccccccccccccc
Q 002613 87 FEAIKHVKALTELGPHPVGS---DALDRALQYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS---~~~~~a~~yL~~~l~~ig~~~~~~~~-v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
+++.+.|++|.++..- .+. .++.++++||.++|+++| ++ ++....... .......
T Consensus 5 ~~~~~~l~~lv~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~--------------~~~~~~~ 63 (400)
T PRK13983 5 DEMIELLSELIAIPAV-NPDFGGEGEKEKAEYLESLLKEYG------FDEVERYDAPDP--------------RVIEGVR 63 (400)
T ss_pred HHHHHHHHHHhCcCCC-CCCCCCccHHHHHHHHHHHHHHcC------CceEEEEecCCc--------------ccccCCC
Confidence 5788899999986331 221 235689999999999998 33 433110000 0000125
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCC
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (900)
Q Consensus 163 ~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p 221 (900)
.|++++++|. .+.+.|++++|+|+||. +.|+.|+..|++++|++++.|.+.+.++
T Consensus 64 ~nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~ 139 (400)
T PRK13983 64 PNIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRP 139 (400)
T ss_pred ccEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCC
Confidence 7999999774 23468999999999985 3689999999999999999999877778
Q ss_pred CCcEEEEEecCCCCCCc-chHHHHH
Q 002613 222 KNAVIFLFNTGEEEGLN-GAHSFVT 245 (900)
Q Consensus 222 ~~~Iiflf~~aEE~gL~-GS~~fi~ 245 (900)
+.+|.|+|..+||.|.. |++.++.
T Consensus 140 ~~~v~~~~~~dEE~g~~~g~~~~~~ 164 (400)
T PRK13983 140 KYNLGLAFVSDEETGSKYGIQYLLK 164 (400)
T ss_pred CCcEEEEEEeccccCCcccHHHHHh
Confidence 89999999999998774 7777765
No 28
>PRK05469 peptidase T; Provisional
Probab=99.04 E-value=1.9e-09 Score=123.81 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCCCCC------C-HHHHHHHHHHHHHHHhhccccCCcce-EEEEeeeccCCccccccccccccccc
Q 002613 87 FEAIKHVKALTELGPHPVG------S-DALDRALQYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFMGRTLI 158 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~G------S-~~~~~a~~yL~~~l~~ig~~~~~~~~-v~vd~f~~~~g~~~~~gg~~~~~~~~ 158 (900)
+++.+.|++|.+|..-... | .+.+++.+||.++++++| ++ ++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G------~~~~~~~---------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELG------LQDVTLD---------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcC------CCeEEEC----------------------
Confidence 3567888888876332111 1 345799999999999999 33 3331
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccCC--------------------------------------------
Q 002613 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------------------------------------------- 194 (900)
Q Consensus 159 y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~s-------------------------------------------- 194 (900)
...||+++++|.. ..+.+.|++.+|+|+||..
T Consensus 54 --~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (408)
T PRK05469 54 --ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLI 129 (408)
T ss_pred --CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEE
Confidence 2358999998741 2346899999999999642
Q ss_pred --CCC----CCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHH
Q 002613 195 --EGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 195 --pGA----~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~ 245 (900)
.|+ .|+++|+|+||.+++.|.+.+..++.+|+|+|..+||.| .|++.++.
T Consensus 130 ~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 130 TTDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred EcCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhh
Confidence 255 999999999999999998866567789999999999998 89988763
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.03 E-value=2.9e-09 Score=121.87 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccccc
Q 002613 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
..-.+++.+.|++|.+|.. +.++.+.+++.+||.++++++| ++++.. .. +...
T Consensus 5 ~~~~~~~~~~l~~lv~ipS-~~~~~~~~~~~~~l~~~l~~~G------~~~~~~--~~------------------~~g~ 57 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINT-VQPNPDYAACVDFLIKQADELG------LARKTI--EF------------------VPGK 57 (400)
T ss_pred ccchHHHHHHHHHHhccCc-cCCCccHHHHHHHHHHHHHhCC------CceeEE--Ee------------------cCCc
Confidence 4567889999999999733 2333334689999999999998 333321 11 0124
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCC
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (900)
Q Consensus 163 ~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p 221 (900)
.|++++++|+ ....+.|++++|+|+||. +.|+.|+.+|+|++|++++.|.+.+.++
T Consensus 58 ~~l~~~~~g~---~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~ 134 (400)
T TIGR01880 58 PVVVLTWPGS---NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKF 134 (400)
T ss_pred eeEEEEEecC---CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 6899999774 122478999999999973 2689999999999999999999877778
Q ss_pred CCcEEEEEecCCCCCC-cchHHHHHc
Q 002613 222 KNAVIFLFNTGEEEGL-NGAHSFVTQ 246 (900)
Q Consensus 222 ~~~Iiflf~~aEE~gL-~GS~~fi~~ 246 (900)
+.+|.|+|..+||.|- .|++.++++
T Consensus 135 ~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 135 KRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CceEEEEEeCCcccCcHhHHHHHHHh
Confidence 8999999999999874 588887753
No 30
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.03 E-value=2.7e-09 Score=123.40 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
.+++.+.|++|.+| | ..|.++.++++||.++++++| ++++....... ......+ .......+.+..||
T Consensus 19 ~~~~~~~l~~li~i-p--S~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~nl 86 (427)
T PRK06837 19 FDAQVAFTQDLVRF-P--STRGAEAPCQDFLARAFRERG------YEVDRWSIDPD-DLKSHPG--AGPVEIDYSGAPNV 86 (427)
T ss_pred hHHHHHHHHHHhcc-C--CCCCcHHHHHHHHHHHHHHCC------CceEEecCCHH-Hhhhccc--ccccccccCCCceE
Confidence 45677788888886 2 234456689999999999998 34433110000 0000000 00001123457899
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~s---------------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
+++++|. ..+.+.|++++|+|+||.+ .|+.|+..|++++|.+++.+.+.+.+++++
T Consensus 87 ~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 87 VGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred EEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 2345789999999999863 499999999999999999999887778999
Q ss_pred EEEEEecCCCCCCcchHHHHH
Q 002613 225 VIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~ 245 (900)
|.|+|+.+||.+..|+...+.
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred EEEEEEeccccCCHhHHHHHh
Confidence 999999999987667655543
No 31
>PRK13381 peptidase T; Provisional
Probab=99.02 E-value=2.4e-09 Score=122.78 Aligned_cols=125 Identities=14% Similarity=0.231 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccc
Q 002613 89 AIKHVKALTELGPHP-------VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (900)
Q Consensus 89 A~~~L~~L~~igpr~-------~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~ 161 (900)
+.+.+.+|.+|.... ..+++++++++||.++++++|.+ .+++ ..
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~------------------------~~ 53 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVI------------------------DE 53 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEE------------------------cC
Confidence 456667776653221 12445678999999999999931 1222 12
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccCC----------------------------------------------C
Q 002613 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----------------------------------------------E 195 (900)
Q Consensus 162 ~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~s----------------------------------------------p 195 (900)
..||+++++|+ ....+.|++++|+|+||.+ .
T Consensus 54 ~~nvi~~~~g~---~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr 130 (404)
T PRK13381 54 HAIVTAKLPGN---TPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSD 130 (404)
T ss_pred CeEEEEEEecC---CCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCC
Confidence 45999999875 1223899999999999753 2
Q ss_pred CC----CCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 196 GA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 196 GA----~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|+ .|+..|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 131 G~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 131 GTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 67 899999999999999998763 457799999999999998999988643
No 32
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.01 E-value=4.5e-09 Score=121.16 Aligned_cols=136 Identities=17% Similarity=0.098 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+++.+.+++|.++.. .... .+++++.+||.++|+++| ++++.+...... + ...+....|
T Consensus 13 ~~~~~~~l~~Lv~i~S-~~~~g~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~------~------~~~~~~~~n 73 (427)
T PRK13013 13 RDDLVALTQDLIRIPT-LNPPGRAYREICEFLAARLAPRG------FEVELIRAEGAP------G------DSETYPRWN 73 (427)
T ss_pred HHHHHHHHHHHhcCCC-cCCCCccHHHHHHHHHHHHHHCC------CceEEEecCCCC------c------ccccCCcce
Confidence 4678888999988622 1111 233689999999999998 445442111000 0 001223579
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcE
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~I 225 (900)
++++++|. .+++.|++++|+|+||. ++|+.|+.+|+|++|.+++.|++.+.+++.+|
T Consensus 74 lia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 149 (427)
T PRK13013 74 LVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSI 149 (427)
T ss_pred EEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccE
Confidence 99999764 24578999999999974 36999999999999999999998777778899
Q ss_pred EEEEecCCCCCCcc-hHHHH
Q 002613 226 IFLFNTGEEEGLNG-AHSFV 244 (900)
Q Consensus 226 iflf~~aEE~gL~G-S~~fi 244 (900)
+|+|..+||.|..| .+.++
T Consensus 150 ~~~~~~dEE~g~~~g~~~l~ 169 (427)
T PRK13013 150 EISGTADEESGGFGGVAYLA 169 (427)
T ss_pred EEEEEeccccCChhHHHHHH
Confidence 99999999987654 44443
No 33
>PRK09104 hypothetical protein; Validated
Probab=99.00 E-value=4.9e-09 Score=122.54 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVGSD----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
..+++.+.|++|.+|.. ..+.+ +.+++.+||.++++++| +++++. .. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G------~~v~~~--~~-------------------~ 66 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAADWLVADLASLG------FEASVR--DT-------------------P 66 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------C
Confidence 46788899999988633 22222 23578999999999998 455442 11 1
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------------CCCCCCChhHHHHHHHHHHHH
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------AEGAGDCSSCVAVMLELARAM 214 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------------spGA~DdgsGVA~mLElaR~l 214 (900)
...||++++.|. ....+.|++++|+|+||. +.|+.|++.|+|++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 235999999764 234678999999999863 357899999999999999999
Q ss_pred HhccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 215 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 215 ~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
.+.+..++.+|.|++.++||.|-.|...++.+
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 175 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEA 175 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHh
Confidence 98666677899999999999988888888764
No 34
>PRK06915 acetylornithine deacetylase; Validated
Probab=98.99 E-value=5.4e-09 Score=120.49 Aligned_cols=145 Identities=22% Similarity=0.216 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
.+++.+.+++|.++ |- -|.++.++.+||.++|+++| +++++........ .....+......+....|+
T Consensus 16 ~~~~~~~l~~lv~i-ps--~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KS--VSGDESGAQAIVIEKLRELG------LDLDIWEPSFKKL---KDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CC--CCcchHHHHHHHHHHHHhcC------CeeEEeecchhhh---hcccccCCcccccCCCceE
Confidence 46788899999985 33 34456788999999999998 3444321100000 0000000000012245899
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
+++++|. .+.+.|++++|+|+||. +.|+.|+.+|++++|.+++.|++.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 24578999999999984 3799999999999999999999877778889
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.|++..+||.|..|+...+.+
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred EEEEEecccccCCcchHHHHhc
Confidence 9999999999987788776543
No 35
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=98.99 E-value=3.4e-09 Score=119.21 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 85 SEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.++++.+.|++|.++ |-+ |..+.++.+|+.++++++| .+++.+ +..|
T Consensus 4 ~~~~~~~~l~~Lv~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEI-PSP--SGEEAAAAEFLVEFMESHG------REAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcC-CCC--CCChHHHHHHHHHHHHHcC------CEEEEc------------------------CCCc
Confidence 357899999999986 333 3345689999999999998 444432 2358
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecC
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 232 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~a 232 (900)
+++++.+ .++.|++++|+|+||. +.|+.|+..|+|++|++++.| + .+++.+|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 8998732 2378999999999973 589999999999999999999 3 46788999999999
Q ss_pred CCCCCcchHHHHH
Q 002613 233 EEEGLNGAHSFVT 245 (900)
Q Consensus 233 EE~gL~GS~~fi~ 245 (900)
||.|..|...++.
T Consensus 122 EE~g~~~~~~~l~ 134 (348)
T PRK04443 122 EEAPSSGGARLVA 134 (348)
T ss_pred cccCChhHHHHHH
Confidence 9998776655543
No 36
>PRK07907 hypothetical protein; Provisional
Probab=98.98 E-value=7.4e-09 Score=120.55 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVGS----DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS----~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
..+++.+.|++|.+|.. +.+. .+.+++.+||.++++++|. .++++. .. .
T Consensus 16 ~~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~-----~~~~~~--~~-------------------~ 68 (449)
T PRK07907 16 LLPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF-----DDVRVV--SA-------------------D 68 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC-----ceEEEE--ec-------------------C
Confidence 35688899999998633 2221 2235899999999999982 133332 11 1
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccC
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 219 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~ 219 (900)
...|++++++++ .+.+.|++++|+|+||. ++|+.|++.|+|++|++++.| . .
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--G 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--c
Confidence 356999999763 24578999999999985 269999999999999999999 3 4
Q ss_pred CCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 220 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 220 ~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+++.+|.|++++.||.|..|++.++++
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~ 168 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAE 168 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHh
Confidence 567899999999999998899988864
No 37
>PRK06446 hypothetical protein; Provisional
Probab=98.98 E-value=6.4e-09 Score=120.66 Aligned_cols=126 Identities=16% Similarity=0.240 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 87 FEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
+++.+.|++|.+|.. +.+.. +.+++.+||.++++++| ++++.+ +. .+..|+
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~~l~~~l~~~G------~~ve~~--~~-------------------~~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETANYLKDTMEKLG------IKANIE--RT-------------------KGHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------CCCCEE
Confidence 467889999998633 22222 23689999999999998 455442 11 124699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++.+ .+.+.|++++|+|+||. +.||.|+++|+|++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 999853 23578999999999873 3699999999999999999887654 56789
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.|+|..+||.|..|++.++.+
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~ 149 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEK 149 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHH
Confidence 9999999999998888888754
No 38
>PRK07522 acetylornithine deacetylase; Provisional
Probab=98.97 E-value=4.9e-09 Score=119.07 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEE
Q 002613 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI 166 (900)
.++.+.|++|.+| |.+.+. ++.++.+||.++|+++| +++++.. .. .....||+
T Consensus 4 ~~~~~~l~~lv~i-~S~s~~-~~~~~~~~l~~~l~~~G------~~~~~~~--~~-----------------~~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAF-DTVSRD-SNLALIEWVRDYLAAHG------VESELIP--DP-----------------EGDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCC-CCcCCC-ccHHHHHHHHHHHHHcC------CeEEEEe--cC-----------------CCCcccEE
Confidence 4678899999986 333332 22489999999999998 4444321 10 01347999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEE
Q 002613 167 LRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (900)
Q Consensus 167 ~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Ii 226 (900)
+++.++ +.+.|++++|+|+|+. +.|+.|+..|+|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998542 3468999999999873 378999999999999999999875 4678999
Q ss_pred EEEecCCCCCCcchHHHHHc
Q 002613 227 FLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 227 flf~~aEE~gL~GS~~fi~~ 246 (900)
|+|..+||.|..|++.++.+
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~ 149 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIAR 149 (385)
T ss_pred EEEEeccccCCccHHHHHHH
Confidence 99999999988899998763
No 39
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.97 E-value=6.2e-09 Score=117.80 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEE
Q 002613 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (900)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~ 167 (900)
++.+.+++|.++ +.-|..++++++||.++|+++| ++++.. .. ....|+++
T Consensus 3 ~~~~~l~~Lv~i---ps~s~~e~~~~~~l~~~l~~~G------~~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRR---PSVTPDDAGCQDLLAERLEALG------FTCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCC---CCCCCchhhHHHHHHHHHHHcC------CeEEEe--cc-------------------CCCcEEEE
Confidence 456778888874 3344556789999999999998 444431 10 13569999
Q ss_pred EEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhccCCCCCcEE
Q 002613 168 RIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (900)
Q Consensus 168 ~i~g~~~~~~~~~~vLl~aH~DSv~~s---------------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~Ii 226 (900)
++ |. +++.|++++|+|+||.+ .|+.|+..|++++|++++.+.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 42 35789999999999853 58999999999999999999887777889999
Q ss_pred EEEecCCCCC-CcchHHHHH
Q 002613 227 FLFNTGEEEG-LNGAHSFVT 245 (900)
Q Consensus 227 flf~~aEE~g-L~GS~~fi~ 245 (900)
|++..+||.+ ..|++.+++
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~ 146 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLE 146 (375)
T ss_pred EEEEeecccccccCHHHHHH
Confidence 9999999975 468888865
No 40
>PRK07318 dipeptidase PepV; Reviewed
Probab=98.97 E-value=4.9e-09 Score=122.65 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 86 EFEAIKHVKALTELGPHPVG---------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~G---------S~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
.+++.+.|++|.+|..-..+ -.++.++.+||.++++++| ++++.
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G------~~~~~--------------------- 65 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDG------FKTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCC------CEEEE---------------------
Confidence 46778889999987432212 1235689999999999998 34332
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~ 217 (900)
..|++++++.. ...+.|++++|+|+||. +.|+.|+..|+|+++.+++.|++.
T Consensus 66 -----~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~ 136 (466)
T PRK07318 66 -----VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL 136 (466)
T ss_pred -----ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHc
Confidence 12555555431 23467999999999974 379999999999999999999988
Q ss_pred cCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 218 ~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+.+++.+|.|+|+.+||.|..|++.++.+
T Consensus 137 g~~~~~~i~l~~~~DEE~g~~G~~~l~~~ 165 (466)
T PRK07318 137 GLPLSKKVRFIVGTDEESGWKCMDYYFEH 165 (466)
T ss_pred CCCCCccEEEEEEcccccCchhHHHHHHh
Confidence 77788899999999999999999999875
No 41
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.95 E-value=7e-09 Score=119.44 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCCCCC--------CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccc
Q 002613 87 FEAIKHVKALTELGPHPVG--------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~G--------S~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~ 158 (900)
+|+.+.+-++++|... .+ +.++++..+||.++|+++|. -++++|
T Consensus 3 ~~~~~~f~~~~~i~s~-s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~-----~~v~~d---------------------- 54 (410)
T TIGR01882 3 EELLPRFLTYVKVNTR-SDENSDTCPSTPGQLTFGNMLVDDLKSLGL-----QDAHYD---------------------- 54 (410)
T ss_pred hHHHHHHHhhEEEecc-cCCCCCCCCCCHhHHHHHHHHHHHHHHcCC-----ceEEEc----------------------
Confidence 5777777788776432 22 22445799999999999993 136653
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------------------------------
Q 002613 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------------------------- 193 (900)
Q Consensus 159 y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------------------------------- 193 (900)
.+..||+++++|.. ..+.+.|++.||+|||+.
T Consensus 55 -~~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 131 (410)
T TIGR01882 55 -EKNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLI 131 (410)
T ss_pred -CCceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEE
Confidence 13679999998752 112489999999999973
Q ss_pred -CCC----CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHH
Q 002613 194 -AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 194 -spG----A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~ 245 (900)
+.| +.||.+|+|+||++++.|.+.+..++.+|.|+|+.+||.| .|++.+..
T Consensus 132 ~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 132 TTDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EcCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 111 2799999999999999998853345779999999999998 58887753
No 42
>PRK07205 hypothetical protein; Provisional
Probab=98.95 E-value=8e-09 Score=120.07 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS--------~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
+.+++.+.|++|.+|.. ..+. ++-.++.+|+.++++++| ++++++ .
T Consensus 9 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~~~--~----------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPS-VLNEGENGTPFGQAIQDVLEATLDLCQGLG------FKTYLD--P----------------- 62 (444)
T ss_pred hHHHHHHHHHHHccccc-ccCCCcCCCCCchhHHHHHHHHHHHHHhCC------CEEEEc--C-----------------
Confidence 56788899999988632 2221 223578899999999998 444442 0
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHH
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMS 215 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~ 215 (900)
...|+++++ |. .++.|++++|+|+||. +.|+.|+..|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 012455654 32 3467999999999974 3799999999999999999999
Q ss_pred hccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 216 QWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 216 ~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+.+.+++++|.|+|.++||.|..|++.|+.+
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhC
Confidence 8888888999999999999999999998864
No 43
>PRK08201 hypothetical protein; Provisional
Probab=98.94 E-value=1.1e-08 Score=119.39 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVG---SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~G---S~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~ 161 (900)
..+++.+.|++|.+|..-..+ ..++.++.+||.++|+++|.+ .++++. . .+
T Consensus 12 ~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~-------------------~~ 65 (456)
T PRK08201 12 RREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T-------------------AG 65 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c-------------------CC
Confidence 346788889999886332111 123457899999999999831 133321 1 12
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCC
Q 002613 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (900)
Q Consensus 162 ~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~ 220 (900)
..||++++.|. .+.+.|++++|+|+||. +.|+.|+..|+|++|++++.+.+.+..
T Consensus 66 ~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~ 141 (456)
T PRK08201 66 HPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGT 141 (456)
T ss_pred CCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCC
Confidence 35899988653 24578999999999873 369999999999999999999876556
Q ss_pred CCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 221 FKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 221 p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
++.+|.|++..+||.|..|+..++.+
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~ 167 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEE 167 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHh
Confidence 77899999999999988888877753
No 44
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=98.94 E-value=7.2e-09 Score=116.58 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEcC
Q 002613 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (900)
Q Consensus 92 ~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~g 171 (900)
.|++|.+|.. +.+. ++.++++||.++|+++| ++++.+.... + ....|+++++.+
T Consensus 2 ~l~~lv~i~S-~s~~-~~~~~~~~l~~~l~~~G------~~~~~~~~~~--------~----------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFDS-TSFR-PNVDLIDWAQAYLEALG------FSVEVQPFPD--------G----------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcCC-cCCc-cHHHHHHHHHHHHHHcC------CeEEEEeCCC--------C----------CccccEEEEecC
Confidence 4677877522 2222 23589999999999998 4555432110 0 135799999854
Q ss_pred CCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEec
Q 002613 172 KYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 231 (900)
Q Consensus 172 ~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~ 231 (900)
+ +.+.|++++|+|+||. +.|+.|+.+|+|++|.+++.|.+. +.+++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 3 3467999999999974 378999999999999999999874 457899999999
Q ss_pred CCCCCCcchHHHHHc
Q 002613 232 GEEEGLNGAHSFVTQ 246 (900)
Q Consensus 232 aEE~gL~GS~~fi~~ 246 (900)
+||.|..|++.++.+
T Consensus 129 ~EE~g~~G~~~~~~~ 143 (364)
T TIGR01892 129 DEEVGCTGAPKMIEA 143 (364)
T ss_pred ccccCCcCHHHHHHh
Confidence 999999999998875
No 45
>PRK08652 acetylornithine deacetylase; Provisional
Probab=98.92 E-value=8.3e-09 Score=115.32 Aligned_cols=119 Identities=25% Similarity=0.308 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEE
Q 002613 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI 166 (900)
|++.+.+++|.++ |-+ |.++.++.+||.++|+++| ++++.+. . .+..|++
T Consensus 2 ~~~~~~~~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G------~~v~~~~--~-------------------~~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKI-PSP--SGQEDEIALHIMEFLESLG------YDVHIES--D-------------------GEVINIV 51 (347)
T ss_pred hhHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcC------CEEEEEe--c-------------------CceeEEE
Confidence 6888999999986 333 3345789999999999998 4555421 0 1245666
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCC
Q 002613 167 LRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (900)
Q Consensus 167 ~~i~g~~~~~~~~~~vLl~aH~DSv~~------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE 234 (900)
+ + +++.|++++|+|+||. ++|+.|+.+|+|+||++++.|.+. .++.+|+|+|..+||
T Consensus 52 ~---~------~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---N------SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---C------CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 2 2367999999999984 479999999999999999999863 346799999999999
Q ss_pred CCCcchHHHHHc
Q 002613 235 EGLNGAHSFVTQ 246 (900)
Q Consensus 235 ~gL~GS~~fi~~ 246 (900)
.|..|++.++.+
T Consensus 121 ~g~~G~~~~~~~ 132 (347)
T PRK08652 121 EGGRGSALFAER 132 (347)
T ss_pred cCChhHHHHHHh
Confidence 988899888753
No 46
>PRK05111 acetylornithine deacetylase; Provisional
Probab=98.91 E-value=1.2e-08 Score=116.03 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccc
Q 002613 86 EFEAIKHVKALTELGPHPVGSD-----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~-----~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
.+++.+.+++|.++ |-..+.+ +++++.+||.+.|+++| ++++.+... + ..
T Consensus 4 ~~~~i~~l~~lv~i-~s~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~~~---------~---------~~ 58 (383)
T PRK05111 4 LPSFIEMYRALIAT-PSISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQPVP---------G---------TR 58 (383)
T ss_pred chHHHHHHHHHhCc-CCcCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEecC---------C---------CC
Confidence 34788999999986 3233321 23579999999999998 445443110 0 01
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCC
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~ 220 (900)
+..|+++++ |. +.+.|++.+|+|+||. +.|+.|+.+++|++|++++.|.+. .
T Consensus 59 ~~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~ 130 (383)
T PRK05111 59 GKFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--K 130 (383)
T ss_pred CCceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--C
Confidence 346999998 43 1246999999999963 479999999999999999999863 3
Q ss_pred CCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 221 FKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 221 p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
++.+|+|+|..+||.|..|++.++.+
T Consensus 131 ~~~~i~~~~~~~EE~g~~G~~~~~~~ 156 (383)
T PRK05111 131 LKKPLYILATADEETSMAGARAFAEA 156 (383)
T ss_pred CCCCeEEEEEeccccCcccHHHHHhc
Confidence 56889999999999998899988864
No 47
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=98.90 E-value=1.8e-08 Score=118.55 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccccc
Q 002613 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
....+++++.+++|+++ |++.+. .+++++||.++++++| +++++| ..
T Consensus 6 ~~~~~~~~~~l~~Lv~i-ps~S~~--e~~~~~~l~~~~~~~G------~~~~~d------------------------~~ 52 (485)
T PRK15026 6 QLSPQPLWDIFAKICSI-PHPSYH--EEQLAEYIVGWAKEKG------FHVERD------------------------QV 52 (485)
T ss_pred hcCHHHHHHHHHHHhCC-CCCCCC--HHHHHHHHHHHHHhCC------CEEEEE------------------------ec
Confidence 34578899999999997 676554 4589999999999998 455543 23
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeecccccCC------------------------CCC---CCChhHHHHHHHHHHHHH
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGA---GDCSSCVAVMLELARAMS 215 (900)
Q Consensus 163 ~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~s------------------------pGA---~DdgsGVA~mLElaR~l~ 215 (900)
.|++++.+++. +....+.|++.+|+|+|+.. .|+ .|+++|+|++|++++
T Consensus 53 gnvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~--- 128 (485)
T PRK15026 53 GNILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA--- 128 (485)
T ss_pred CeEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---
Confidence 58999886531 11345789999999999641 677 499999999998763
Q ss_pred hccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 216 QWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 216 ~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+.+. +..+|.++|+.+||.|+.||+.+...
T Consensus 129 ~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~ 158 (485)
T PRK15026 129 DENV-VHGPLEVLLTMTEEAGMDGAFGLQSN 158 (485)
T ss_pred hCCC-CCCCEEEEEEcccccCcHhHHHhhhc
Confidence 3333 36689999999999999999998643
No 48
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=98.89 E-value=1.3e-08 Score=114.46 Aligned_cols=115 Identities=20% Similarity=0.190 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
.+++.+.|++|.+|.. .|.+++++.+||.++++++| ++++.+. ..|.
T Consensus 9 ~~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~------------------------~~~~ 55 (346)
T PRK00466 9 KQKAKELLLDLLSIYT---PSGNETNATKFFEKISNELN------LKLEILP------------------------DSNS 55 (346)
T ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcC------CeEEEec------------------------CCCc
Confidence 4789999999999733 34445789999999999998 4444421 1243
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
++ .|. +.|++++|+|+||. ++|+.|+..|+|++|++++.+.+.+ .+++|+++.+|
T Consensus 56 ~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dE 122 (346)
T PRK00466 56 FI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADE 122 (346)
T ss_pred Ee--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCc
Confidence 32 231 35999999999985 4899999999999999999998754 35899999999
Q ss_pred CCCCcchHHHHHc
Q 002613 234 EEGLNGAHSFVTQ 246 (900)
Q Consensus 234 E~gL~GS~~fi~~ 246 (900)
|.|..|++.++.+
T Consensus 123 E~g~~G~~~l~~~ 135 (346)
T PRK00466 123 ESTSIGAKELVSK 135 (346)
T ss_pred ccCCccHHHHHhc
Confidence 9988899988764
No 49
>PRK07079 hypothetical protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=117.77 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHH----HHHHhhccccCCcceEEEEeeeccCCccccccccccccccc
Q 002613 84 FSEFEAIKHVKALTELGPHPVGSD-ALDRALQYVF----AAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (900)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~----~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~ 158 (900)
++++++.+.|++|.+|.. ..+.+ +...+++|+. +.|+++| +++++. ... .
T Consensus 14 ~~~~~~~~~L~~LV~ipS-vs~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~~--~~~----------------~ 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYRT-ESQNPDRAPALRAYLTDEIAPALAALG------FTCRIV--DNP----------------V 68 (469)
T ss_pred hccHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHHHHHHHHHCC------CeEEEE--ecC----------------C
Confidence 444688999999998732 23322 2335566654 5677777 344432 110 0
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEEeecccccC----------------------CCCCCCChhHHHHHHHHHHHHHh
Q 002613 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA----------------------AEGAGDCSSCVAVMLELARAMSQ 216 (900)
Q Consensus 159 y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~----------------------spGA~DdgsGVA~mLElaR~l~~ 216 (900)
..+..||++++.+. .+.+.|++++|+|+||. +.|+.|+++|+|++|++++.+.+
T Consensus 69 ~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 69 AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 02357999998553 24578999999999973 26999999999999999999865
Q ss_pred c-cCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 217 W-AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 217 ~-~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
. +.+++.+|+|++..+||.|..|++.++++
T Consensus 145 ~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~ 175 (469)
T PRK07079 145 ARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQ 175 (469)
T ss_pred hcCCCCCCCEEEEEECccccCCccHHHHHHH
Confidence 3 46788899999999999999999998874
No 50
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.88 E-value=1.7e-08 Score=118.24 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCCCC---------CCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 86 EFEAIKHVKALTELGPHPV---------GSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~---------GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
.+++.+.|++|.++..-.. ...+.+++.+|+++.++++| ++++..
T Consensus 12 ~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G------~~~~~~-------------------- 65 (466)
T TIGR01886 12 KDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDG------FTTKNF-------------------- 65 (466)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCC------CeEEEe--------------------
Confidence 3567788888888632210 12345679999999999998 444421
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~ 217 (900)
.|+++++.+. .+++.|++++|+|+||. +.|+.||..|++++|.+++.|++.
T Consensus 66 ------~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~ 135 (466)
T TIGR01886 66 ------DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKEL 135 (466)
T ss_pred ------cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 1222222221 24568999999999975 479999999999999999999988
Q ss_pred cCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 218 ~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+.+++++|+|++..+||.|..|++.++++
T Consensus 136 ~~~~~~~i~~~~~~dEE~g~~g~~~~~~~ 164 (466)
T TIGR01886 136 GLPPSKKIRFVVGTNEETGWVDMDYYFKH 164 (466)
T ss_pred CCCCCCCEEEEEECccccCcccHHHHHhc
Confidence 88889999999999999999999999876
No 51
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.88 E-value=7e-08 Score=108.15 Aligned_cols=200 Identities=21% Similarity=0.286 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEE
Q 002613 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI 166 (900)
++.++.|++|+++ +-+.|. ++++++|+++++++++ .++++ ++..|||
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~--E~eVr~~~~~el~~~~------~ev~~------------------------D~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGY--EEEVRDVLKEELEPLG------DEVEV------------------------DRLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCc--HHHHHHHHHHHHHHhC------CceEE------------------------cCCCcEE
Confidence 3567889999984 445555 4468999999999998 34554 2577999
Q ss_pred EEEcCCCCCcCCCCEEEEEeecccccC-----------------------------------------------------
Q 002613 167 LRIQPKYASEAAENAILVSSHIDTVFA----------------------------------------------------- 193 (900)
Q Consensus 167 ~~i~g~~~~~~~~~~vLl~aH~DSv~~----------------------------------------------------- 193 (900)
++++|+ ...+.|++.||+|.+..
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999884 24456999999998631
Q ss_pred ------------------------------CCC--------------------CCCChhHHHHHHHHHHHHHhccCCCCC
Q 002613 194 ------------------------------AEG--------------------AGDCSSCVAVMLELARAMSQWAHGFKN 223 (900)
Q Consensus 194 ------------------------------spG--------------------A~DdgsGVA~mLElaR~l~~~~~~p~~ 223 (900)
.+| |=||-.||++|||++|.| + +..+++
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 011 779999999999999999 4 577899
Q ss_pred cEEEEEecCCCCCCcchHHHHHc-------------cCC--------------------------ChhHHHHHH---Hhc
Q 002613 224 AVIFLFNTGEEEGLNGAHSFVTQ-------------AGP--------------------------HPWAVENFA---AAA 261 (900)
Q Consensus 224 ~Iiflf~~aEE~gL~GS~~fi~~-------------~Gp--------------------------~~~li~~y~---~~a 261 (900)
++.|+|+.-||.|+.||+....+ +|. ++.+.+... +..
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~i~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~ 282 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFRIKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKN 282 (355)
T ss_pred eEEEEEecchhhccchhhccccccCCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999988777 110 111111111 111
Q ss_pred CCCCcchhhhhhhhcCCCC-CCCchHHHhhc-CCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHc
Q 002613 262 KYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 339 (900)
Q Consensus 262 ~~P~~~~l~~~~f~~g~ip-s~TD~~~F~~~-~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~ 339 (900)
..| +|....| ..||-..+... .|+|...+..- -.+-|+++ +.++.+.+.++.+.+.+++..+..
T Consensus 283 ~Ip---------~Q~~v~~~ggTDA~a~~~~g~gvpta~Igip--~ry~Hs~~---e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 283 NIP---------YQVDVSPGGGTDAGAAHLTGGGVPTALIGIP--TRYIHSPV---EVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred CCC---------eEEEecCCCCccHHHHHHcCCCCceEEEecc--cccccCcc---eeecHHHHHHHHHHHHHHHHhcch
Confidence 111 3434455 58898776542 57998887642 23447764 566788888888777777776554
No 52
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.85 E-value=2.9e-08 Score=113.20 Aligned_cols=133 Identities=14% Similarity=0.200 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+++.+.|++|.+|.. ...+ .+++++.+||.++++++| ++++++.... + .. .. ......|
T Consensus 5 ~~~~~~~l~~lv~i~S-~s~~~~~~~~~a~~l~~~l~~~G------~~~~~~~~~~--~-------~~-~~--~~~~~~~ 65 (394)
T PRK08651 5 MFDIVEFLKDLIKIPT-VNPPGENYEEIAEFLRDTLEELG------FSTEIIEVPN--E-------YV-KK--HDGPRPN 65 (394)
T ss_pred HHHHHHHHHHHhcCCc-cCCCCcCHHHHHHHHHHHHHHcC------CeEEEEecCc--c-------cc-cc--ccCCcce
Confidence 4788899999999733 2212 334689999999999998 4555432110 0 00 00 0012467
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccCC--------------------CCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFAA--------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~s--------------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++. +. .++.|++.+|+|+||.. .|+.|+..|++++|++++.+.+.+ +++
T Consensus 66 ~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~ 136 (394)
T PRK08651 66 LIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGN 136 (394)
T ss_pred EEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCC
Confidence 88865 32 23789999999999742 678999999999999999998754 789
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.|+|..+||.|..|++.++.+
T Consensus 137 v~~~~~~~EE~g~~G~~~~~~~ 158 (394)
T PRK08651 137 IELAIVPDEETGGTGTGYLVEE 158 (394)
T ss_pred EEEEEecCccccchhHHHHHhc
Confidence 9999999999988999999875
No 53
>PRK13004 peptidase; Reviewed
Probab=98.83 E-value=3.8e-08 Score=112.78 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
.+++.+.+++|.++ |- -|.++.++.+||.++++++| +++.. . ....|+
T Consensus 14 ~~~~~~~l~~lv~i-ps--~s~~e~~~a~~l~~~l~~~G------~~~~~--~---------------------~~~~n~ 61 (399)
T PRK13004 14 KADMTRFLRDLIRI-PS--ESGDEKRVVKRIKEEMEKVG------FDKVE--I---------------------DPMGNV 61 (399)
T ss_pred HHHHHHHHHHHhcC-CC--CCCchHHHHHHHHHHHHHcC------CcEEE--E---------------------cCCCeE
Confidence 45788889999885 33 33445688999999999998 33211 0 123588
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++.+. ++.|++++|+|+|+. ++|+.||.+|++++|.+++.|.+.+.+++.+
T Consensus 62 ~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 135 (399)
T PRK13004 62 LGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYT 135 (399)
T ss_pred EEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCe
Confidence 9988542 278999999999985 2589999999999999999999887778899
Q ss_pred EEEEEecCCCCC-CcchHHHHHc
Q 002613 225 VIFLFNTGEEEG-LNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~g-L~GS~~fi~~ 246 (900)
|+|+|..+||.+ -.|++.++.+
T Consensus 136 i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 136 LYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred EEEEEEcccccCcchhHHHHHHh
Confidence 999999999963 4556655543
No 54
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.83 E-value=1.5e-08 Score=102.87 Aligned_cols=139 Identities=28% Similarity=0.364 Sum_probs=99.7
Q ss_pred EEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCc-chHH
Q 002613 183 LVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN-GAHS 242 (900)
Q Consensus 183 Ll~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~-GS~~ 242 (900)
|+.+|+|+|+. ++|+.|++.|+++++.++|.+++.+.+++.+|+|+|+.+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999991 589999999999999999999988889999999999999999998 9999
Q ss_pred HHHc------------cC-----------CChhHHHHHHHhcCCCCcchhhhhhh----hcCCCCCCCchHHHhh--cCC
Q 002613 243 FVTQ------------AG-----------PHPWAVENFAAAAKYPSGQVTAQDLF----ASGAITSATDFQVYKE--VAG 293 (900)
Q Consensus 243 fi~~------------~G-----------p~~~li~~y~~~a~~P~~~~l~~~~f----~~g~ips~TD~~~F~~--~~g 293 (900)
++++ .| .++.+++...+.. ++.+ .....+..||...|.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVGSDNDPPLVQALQAAA---------QEVGGEPPEPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEEHCTCHHHHHHHHHHH---------HHTTSSEEEEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhcccccccccccccccccccccccccccHHHHHHHHHHH---------HHHhhccccccceeccccchhhhhhhccc
Confidence 9886 00 1222333322221 1111 1123567899999985 467
Q ss_pred CcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 002613 294 LSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 335 (900)
Q Consensus 294 iPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~ 335 (900)
+|.+.+.... ...|++.. +++.+.+....+.+..+++
T Consensus 152 ~~~i~~G~~~--~~~H~~~E---~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPDE---YIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCCc---EecHHHHHHHHHHHHHHHh
Confidence 8877765443 67898764 4557777777777666654
No 55
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.82 E-value=3.4e-08 Score=110.82 Aligned_cols=117 Identities=26% Similarity=0.302 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh-ccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKI-KETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~i-g~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
++++.+.+++|.++ |-+ |..+.++.+||.++++++ + .+++. ...|
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~~~-------------------------~~~~ 51 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEVIR-------------------------HGNS 51 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceEEe-------------------------cCCe
Confidence 36888999999985 444 344568999999999996 4 23221 1248
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC--------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEe
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFN 230 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~ 230 (900)
+++++.+. +.+.|++++|+|+||. +.|+.|+++|+|++|.+++.|. +++++|.|+|.
T Consensus 52 ~~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~ 122 (352)
T PRK13007 52 VVARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFY 122 (352)
T ss_pred EEEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEE
Confidence 99998432 2246999999999984 4899999999999999999993 36789999999
Q ss_pred cCCCCCC--cchHHHHH
Q 002613 231 TGEEEGL--NGAHSFVT 245 (900)
Q Consensus 231 ~aEE~gL--~GS~~fi~ 245 (900)
++||.+. .|+..++.
T Consensus 123 ~~EE~~~~~~G~~~~~~ 139 (352)
T PRK13007 123 DCEEVEAEANGLGRLAR 139 (352)
T ss_pred ecccccCCcccHHHHHH
Confidence 9999854 46666654
No 56
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.78 E-value=6.1e-08 Score=111.34 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceE
Q 002613 87 FEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
+++.+.|+.|.++ +.-| .+..++++|+.++++++| ..++.+.... + ....|+
T Consensus 13 ~~~~~~l~~lv~~---~s~s~~~~~~~~~~l~~~l~~~g------~~~~~~~~~~--------~----------~~~~n~ 65 (409)
T COG0624 13 DDILELLKELVRI---PSVSAGEEAEAAELLAEWLEELG------FEVEEDEVGP--------G----------PGRPNL 65 (409)
T ss_pred HHHHHHHHHHhcC---CCCCcccchHHHHHHHHHHHHcC------CceEEeecCC--------C----------CCceEE
Confidence 4455777777775 3344 566799999999999998 3455432111 0 035699
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccCC---------------------CCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~s---------------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++.+. .+++.|++++|+|+||.+ .|+.|+..++++++.+++.+.+.+..++.+
T Consensus 66 ~~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~ 141 (409)
T COG0624 66 VARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGD 141 (409)
T ss_pred EEEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeE
Confidence 9999875 233899999999999863 699999999999999999999977788899
Q ss_pred EEEEEecCCCCCCcchHHHHHc
Q 002613 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.+++..+||.|-.|...++.+
T Consensus 142 v~~~~~~dEE~g~~~~~~~~~~ 163 (409)
T COG0624 142 VRLLFTADEESGGAGGKAYLEE 163 (409)
T ss_pred EEEEEEeccccCCcchHHHHHh
Confidence 9999999999998888888764
No 57
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=98.78 E-value=5.6e-08 Score=103.73 Aligned_cols=67 Identities=28% Similarity=0.423 Sum_probs=60.6
Q ss_pred CEEEEEeeccccc----CCCCCCCChhHHHHHHHHHHHHHhc---cCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 180 NAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW---AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 180 ~~vLl~aH~DSv~----~spGA~DdgsGVA~mLElaR~l~~~---~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|.||+.|.+||.. .+|||+++.+|.+++|++++.|++. ....+++|+|+|++||..|..||+.|+.+
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyD 74 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYD 74 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHH
Confidence 5799999999964 4799999999999999999999874 24578999999999999999999999987
No 58
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.77 E-value=7.5e-08 Score=107.82 Aligned_cols=130 Identities=21% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccccc
Q 002613 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
.-+.+|-++.|+.-+- .|.+-++. .+++|+....+.++... ..++.. + ..
T Consensus 25 ~~~v~~f~eylRi~Tv-~p~~dy~~---a~~~Fl~~~a~~l~l~~---~~i~~~----------------------p-~~ 74 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTV-QPNPDYTI---ACADFLKKYAKSLGLTV---QKIESE----------------------P-GK 74 (420)
T ss_pred chHHHHHHHHhhcccc-ccCCCccH---HHHHHHHHHHHhcCCce---eEEEec----------------------C-ce
Confidence 4567777777776664 45444333 78999999999998421 111111 1 25
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCC
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (900)
Q Consensus 163 ~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p 221 (900)
.+++.++.|. +++.+.||+++|.|+||+ +.||.|+.+-++++||++|.|..+|.+|
T Consensus 75 ~~~l~T~~GS---~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp 151 (420)
T KOG2275|consen 75 YVLLYTWLGS---DPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKP 151 (420)
T ss_pred eEEEEEeeCC---CCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCc
Confidence 6788899996 457789999999999984 4799999999999999999999999999
Q ss_pred CCcEEEEEecCCCCC-CcchHHHHH
Q 002613 222 KNAVIFLFNTGEEEG-LNGAHSFVT 245 (900)
Q Consensus 222 ~~~Iiflf~~aEE~g-L~GS~~fi~ 245 (900)
+|+|.+.|--+||.| -.|++.|+.
T Consensus 152 ~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 152 KRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred CceEEEEecCchhccCcchHHHHhh
Confidence 999999999999987 889998886
No 59
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.76 E-value=8.4e-08 Score=108.57 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEc
Q 002613 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (900)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~ 170 (900)
+.|++|.++ +..|..+.++++||.++|+++| +++++.. . .+..|++++.
T Consensus 3 ~~l~~lv~i---ps~s~~e~~~~~~i~~~l~~~G------~~~~~~~--~-------------------~~~~~~~~~~- 51 (370)
T TIGR01246 3 ELAKELISR---PSVTPNDAGCQDIIAERLEKLG------FEIEWMH--F-------------------GDTKNLWATR- 51 (370)
T ss_pred HHHHHHhcC---CCCCcchHHHHHHHHHHHHHCC------CEEEEEe--c-------------------CCCceEEEEe-
Confidence 567778774 3344556789999999999998 4554421 1 1235899975
Q ss_pred CCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEE
Q 002613 171 PKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (900)
Q Consensus 171 g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf 229 (900)
|. ..+.|++++|+|+||. +.|+.|+..|+++++++++.+.+.+.+++.+|+|+|
T Consensus 52 g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~ 126 (370)
T TIGR01246 52 GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLI 126 (370)
T ss_pred cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 32 3478999999999975 258889999999999999999887767788999999
Q ss_pred ecCCCCCC-cchHHHHH
Q 002613 230 NTGEEEGL-NGAHSFVT 245 (900)
Q Consensus 230 ~~aEE~gL-~GS~~fi~ 245 (900)
..+||.+- .|++.+++
T Consensus 127 ~~dEE~~~~~G~~~~~~ 143 (370)
T TIGR01246 127 TSDEEGTAIDGTKKVVE 143 (370)
T ss_pred EeccccCCCcCHHHHHH
Confidence 99999864 68888764
No 60
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.76 E-value=8.7e-08 Score=111.78 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCC-----C-----CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccc
Q 002613 87 FEAIKHVKALTELGPHPV-----G-----SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~-----G-----S~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~ 156 (900)
+.+.+.|++|.++.. .. + .++..++.+|+.++++++| ++++.
T Consensus 2 ~~~i~ll~~Lv~ipS-~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~~--------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDS-VEDLEEAKEGAPFGEGPKKALDKFLELAKRDG------FTTEN--------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHcC------ceEEE---------------------
Confidence 356778888887632 11 1 2234689999999999998 33331
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (900)
Q Consensus 157 ~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~ 217 (900)
..|++++.... ...+.|++++|+|+||. +.|+.|+..|+++++++++.|.+.
T Consensus 54 -----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~ 124 (447)
T TIGR01887 54 -----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKEL 124 (447)
T ss_pred -----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHc
Confidence 11233322211 12367999999999973 479999999999999999999987
Q ss_pred cCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 218 ~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
+.+++++|.|+++.+||.|..|+..++.+
T Consensus 125 ~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 125 GLKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 77788999999999999999999988764
No 61
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.73 E-value=7.4e-08 Score=107.78 Aligned_cols=112 Identities=22% Similarity=0.304 Sum_probs=86.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEcC
Q 002613 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (900)
Q Consensus 92 ~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~g 171 (900)
.+++|.++ |-+.| .++++.+||.++++++| .+++.+ ...|+++.. +
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~~l~~~l~~~g------~~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAKFLEEISKDLG------LKLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHHHHHHHHHHcC------CEEEEC------------------------CCCcEEEEe-C
Confidence 46777775 43443 35689999999999998 344221 124777754 2
Q ss_pred CCCCcCCCCEEEEEeecccccC------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcc
Q 002613 172 KYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNG 239 (900)
Q Consensus 172 ~~~~~~~~~~vLl~aH~DSv~~------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~G 239 (900)
. +.+.|++++|+|+||. +.|+.|+.+|+|+||++++.|.+. ..+|+|+++.+||.|..|
T Consensus 48 ~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 D-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred C-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 1 3578999999999963 479999999999999999999763 358999999999999999
Q ss_pred hHHHHHc
Q 002613 240 AHSFVTQ 246 (900)
Q Consensus 240 S~~fi~~ 246 (900)
++.++.+
T Consensus 119 ~~~~~~~ 125 (336)
T TIGR01902 119 AREVIDK 125 (336)
T ss_pred HHHHHhh
Confidence 9998864
No 62
>PRK06156 hypothetical protein; Provisional
Probab=98.72 E-value=1.9e-07 Score=110.92 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHhcCC-CCCC----C-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGP-HPVG----S-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (900)
Q Consensus 85 s~erA~~~L~~L~~igp-r~~G----S-~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~ 158 (900)
..+++.+.|++|.+|.. .+.+ . ++.....+||.+++++.| ++++.
T Consensus 44 ~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G------~~~~~----------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFG------LDYRN----------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCC------CeEEe-----------------------
Confidence 45677888899988632 1111 1 122456799999999988 33321
Q ss_pred ccccceEE-EEEcCCCCCcCCCCEEEEEeecccccC-------------------------CCCCCCChhHHHHHHHHHH
Q 002613 159 YSDLNHIV-LRIQPKYASEAAENAILVSSHIDTVFA-------------------------AEGAGDCSSCVAVMLELAR 212 (900)
Q Consensus 159 y~~~~NVI-~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------------spGA~DdgsGVA~mLElaR 212 (900)
...||+ ++++|. ..+.|++++|+|+||. +.|+.|+..|+++++++++
T Consensus 95 --~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 95 --VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred --cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 012444 677653 3468999999999974 2589999999999999999
Q ss_pred HHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 213 AMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 213 ~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
.|.+.+.+++++|.|+|+.+||.|..|++.++.+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~ 201 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLER 201 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHh
Confidence 9988777788899999999999999999999875
No 63
>PRK08554 peptidase; Reviewed
Probab=98.68 E-value=2.2e-07 Score=108.14 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 88 EAIKHVKALTELGPHPVG---SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 88 rA~~~L~~L~~igpr~~G---S~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
++.+.|++|.++.....+ ..+..++.+|+.+.++++| ++++.. .. .+..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G------~~~~~~--~~-------------------~~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWG------IESELI--EK-------------------DGYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------CCceE
Confidence 467788889887432111 2234689999999999998 344431 11 12368
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC--------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~--------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
+++.+ |. +++.|++.+|+|+||. ++|+.|+++|+|++|.+++.|.+. .++++
T Consensus 55 l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 88886 32 2367999999999974 389999999999999999999863 36788
Q ss_pred EEEEEecCCCCCCcchHHHHH
Q 002613 225 VIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 225 Iiflf~~aEE~gL~GS~~fi~ 245 (900)
|.|+|+.+||.|..++..++.
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~ 147 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAE 147 (438)
T ss_pred EEEEEEcccccCccccHHHHH
Confidence 999999999998766665543
No 64
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.68 E-value=1.7e-07 Score=106.10 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEc
Q 002613 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (900)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~ 170 (900)
+.+++|.++ |.+.|. +.++.+||.++|+++| ++++.+ . ....|+++++.
T Consensus 3 ~~~~~L~~i-ps~s~~--E~~~a~~l~~~l~~~g------~~~~~~---~-------------------~~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSFE--EFKTSSLIAEALESLG------IEVRRG---V-------------------GGATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCCc--hHHHHHHHHHHHHHcC------CceEec---C-------------------CCCcEEEEEEe
Confidence 567888886 666553 5689999999999998 344331 0 12468999986
Q ss_pred CCCCCcCCCCEEEEEeecccccCC-----------------CCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 171 PKYASEAAENAILVSSHIDTVFAA-----------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 171 g~~~~~~~~~~vLl~aH~DSv~~s-----------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
+. .+++.|++++|+|+||.+ .|+ .+++|+++.+++.|.+.+.+++++|.|+|+.+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 63 234789999999999842 222 257899999999998866667889999999999
Q ss_pred CCCCcchHHHHHc
Q 002613 234 EEGLNGAHSFVTQ 246 (900)
Q Consensus 234 E~gL~GS~~fi~~ 246 (900)
|.+ .|++.++.+
T Consensus 125 E~~-~G~~~~~~~ 136 (363)
T TIGR01891 125 EGG-GGATKMIED 136 (363)
T ss_pred cCc-chHHHHHHC
Confidence 986 788888764
No 65
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.64 E-value=2.7e-07 Score=105.63 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceE-EEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDV-EVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v-~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+++.+.+++|.++ |-+.+ .+.++.+||.++++++| ++. +++ ...|
T Consensus 12 ~~~~~~~~~~lv~i-~s~s~--~e~~~~~~l~~~l~~~G------~~~~~~~------------------------~~~n 58 (395)
T TIGR03320 12 RGDMIRFLRDLVAI-PSESG--DEKRVAERIKEEMEKLG------FDKVEID------------------------PMGN 58 (395)
T ss_pred HHHHHHHHHHHHcC-CCCCC--chHHHHHHHHHHHHHhC------CcEEEEC------------------------CCCC
Confidence 36788888999885 33333 34688999999999998 332 221 1247
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCC
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKN 223 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~ 223 (900)
+++++ |. +.+.|++++|+|+||. +.|+.|+..|+|++|.+++.|.+.+..++.
T Consensus 59 ~~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~ 132 (395)
T TIGR03320 59 VLGYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDY 132 (395)
T ss_pred EEEEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCc
Confidence 88887 42 2367999999999974 389999999999999999999987766778
Q ss_pred cEEEEEecCCCCC
Q 002613 224 AVIFLFNTGEEEG 236 (900)
Q Consensus 224 ~Iiflf~~aEE~g 236 (900)
+|+|.+..+||.+
T Consensus 133 ~i~~~~~~dEE~~ 145 (395)
T TIGR03320 133 TLLVTGTVQEEDC 145 (395)
T ss_pred eEEEEeccccccc
Confidence 9999999999963
No 66
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.60 E-value=1.7e-06 Score=97.68 Aligned_cols=43 Identities=30% Similarity=0.267 Sum_probs=38.6
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcch
Q 002613 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (900)
Q Consensus 197 A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS 240 (900)
|-||.+||+++++++|.+.+.+.+++.+|.|+|+..||.|. |+
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~-ga 223 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS-GA 223 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc-cc
Confidence 58999999999999999998766788999999999999994 53
No 67
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.60 E-value=5.1e-07 Score=103.44 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceE-EEEeeeccCCcccccccccccccccccccceE
Q 002613 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDV-EVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (900)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v-~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (900)
+++.+.+++|.++ |-+. ..+.++.+||.++++++| +++ +.+ ...|+
T Consensus 13 ~~~~~~l~~Lv~i-ps~s--~~e~~~~~~l~~~l~~~g------~~~~~~~------------------------~~~~v 59 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSES--GDEGRVALRIKQEMEKLG------FDKVEID------------------------PMGNV 59 (395)
T ss_pred HHHHHHHHHHhcC-CCCC--CchHHHHHHHHHHHHHcC------CceEEEc------------------------CCCcE
Confidence 5778888888885 3333 335578899999999998 332 211 12588
Q ss_pred EEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCc
Q 002613 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (900)
Q Consensus 166 I~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~ 224 (900)
++++ |. ..+.|++++|+|+||. +.|+.|+..|+|++|.+++.|.+.+..++.+
T Consensus 60 ~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 133 (395)
T TIGR03526 60 LGYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYT 133 (395)
T ss_pred EEEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCce
Confidence 8887 42 2367999999999974 3799999999999999999999877667789
Q ss_pred EEEEEecCCCC-CCcchHHHHH
Q 002613 225 VIFLFNTGEEE-GLNGAHSFVT 245 (900)
Q Consensus 225 Iiflf~~aEE~-gL~GS~~fi~ 245 (900)
+.|++..+||. +-.|++.++.
T Consensus 134 v~~~~~~dEE~~~g~~~~~~~~ 155 (395)
T TIGR03526 134 LLVTGTVQEEDCDGLCWQYIIE 155 (395)
T ss_pred EEEEEecccccCCcHhHHHHHh
Confidence 99999999994 3334445544
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=98.59 E-value=1.3e-06 Score=98.64 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHccCC----------Ch---h-----------
Q 002613 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQAGP----------HP---W----------- 252 (900)
Q Consensus 197 A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~~Gp----------~~---~----------- 252 (900)
|=||-+||++++|++|.+++. ++..+++|+|+..||.|+.||+.-...-.| .+ -
T Consensus 164 alDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i~pd~~I~vDv~~~~d~~~~~~~~~~~lg~ 241 (344)
T PRK09961 164 AFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGN 241 (344)
T ss_pred echhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhccCCCEEEEEeccCCCCCCCCCCCcccccCC
Confidence 789999999999999999753 478999999999999999999887765111 00 0
Q ss_pred --HHHHHH-HhcCCCCcc----hhhhhh---hhcCCCC-CCCchHHHhhc-CCCcEEEEeecCCCCCCCCCCCCcCCCCH
Q 002613 253 --AVENFA-AAAKYPSGQ----VTAQDL---FASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLLKP 320 (900)
Q Consensus 253 --li~~y~-~~a~~P~~~----~l~~~~---f~~g~ip-s~TD~~~F~~~-~giPgld~a~~~~~~~YHT~~Dt~~~i~~ 320 (900)
.+..+- ....+|... .++++. +|....+ .+||-..|... .|+|.+.+..- ..+-||+. |.++.
T Consensus 242 Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p--~ry~Hs~~---E~v~~ 316 (344)
T PRK09961 242 GPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPA--TRHGHCAA---SIADC 316 (344)
T ss_pred CceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEEEecCCCcchHHHHHHhCCCCCEEEechh--hhcccChh---heEEH
Confidence 000000 000000000 011110 1221223 46888866432 68999998642 12348875 55677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002613 321 GSLQHLGENMLAFLLQA 337 (900)
Q Consensus 321 ~slq~~g~~~l~lv~~l 337 (900)
+.+.++.+.+.+++..+
T Consensus 317 ~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 317 RDILQMIQLLSALIQRL 333 (344)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 77888887777776554
No 69
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.59 E-value=3.1e-07 Score=104.64 Aligned_cols=118 Identities=24% Similarity=0.266 Sum_probs=86.2
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEcCC
Q 002613 93 VKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPK 172 (900)
Q Consensus 93 L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~g~ 172 (900)
|++|.++ |-+ |.+++++.+||.++|++++.. .++++.+ ..||++++.+.
T Consensus 2 l~~Lv~i-pS~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~~-----------------------~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDI-FSP--SDHEGPIADEIEAALNNLELE-----GLEVFRF-----------------------GDNVLARTDFG 50 (373)
T ss_pred hHHHhCC-CCC--CchHHHHHHHHHHHHhhcccc-----CceEEEE-----------------------CCEEEEecCCC
Confidence 5677775 322 334568899999999988621 1333210 13899987432
Q ss_pred CCCcCCCCEEEEEeecccccC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--ccC
Q 002613 173 YASEAAENAILVSSHIDTVFA-------------------------------AEGAGDCSSCVAVMLELARAMSQ--WAH 219 (900)
Q Consensus 173 ~~~~~~~~~vLl~aH~DSv~~-------------------------------spGA~DdgsGVA~mLElaR~l~~--~~~ 219 (900)
+.+.|++++|+|+||. +.|+.|+.+|+|+||++++.+.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 3467999999999963 26899999999999999999954 344
Q ss_pred CCCCcEEEEEecCCCCC--CcchHHHHHc
Q 002613 220 GFKNAVIFLFNTGEEEG--LNGAHSFVTQ 246 (900)
Q Consensus 220 ~p~~~Iiflf~~aEE~g--L~GS~~fi~~ 246 (900)
.++.+|.|+|..+||.+ ..|+..++.+
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~ 154 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDA 154 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHh
Confidence 67889999999999985 3588877753
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.53 E-value=3e-06 Score=95.72 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=82.6
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc-------------c-------------CC-
Q 002613 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-------------A-------------GP- 249 (900)
Q Consensus 197 A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~-------------~-------------Gp- 249 (900)
|-||-.||++++|++|.+++. +++.++.++|+.-||.|+.||+.-..+ + ||
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i~pD~aI~vDv~~~~d~~~~~~~~lg~Gp~ 253 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGEGTL 253 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhCCCCEEEEEecCCcCCCCCCCccccCCCce
Confidence 789999999999999999863 578899999999999999999976555 1 11
Q ss_pred ----------ChhHHHHHHHh---cCCCCcchhhhhhhhcCCCCCCCchH--HHhhcCCCcEEEEeecCCCCCCCCCCCC
Q 002613 250 ----------HPWAVENFAAA---AKYPSGQVTAQDLFASGAITSATDFQ--VYKEVAGLSGLDFAYTDKSAVYHTKNDK 314 (900)
Q Consensus 250 ----------~~~li~~y~~~---a~~P~~~~l~~~~f~~g~ips~TD~~--~F~~~~giPgld~a~~~~~~~YHT~~Dt 314 (900)
++.+.+...+. ...| +|.-....+||-. .+.. .|+|.+.++- +-.+-||+.
T Consensus 254 i~~~D~~~i~~~~l~~~l~~~A~~~~I~---------~Q~~~~~gGtDa~~~~~~~-~Gvpt~~i~i--p~Ry~Hs~~-- 319 (350)
T TIGR03107 254 LRFFDPGHIMLPRMKDFLLTTAEEAGIK---------YQYYVAKGGTDAGAAHLKN-SGVPSTTIGV--CARYIHSHQ-- 319 (350)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCC---------cEEecCCCCchHHHHHHhC-CCCcEEEEcc--CcccccChh--
Confidence 11122211111 1111 1210111356655 5655 7999998763 223448876
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 002613 315 LDLLKPGSLQHLGENMLAFLLQA 337 (900)
Q Consensus 315 ~~~i~~~slq~~g~~~l~lv~~l 337 (900)
+.++.+.+.++.+.+.+++..+
T Consensus 320 -e~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 320 -TLYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred -heeeHHHHHHHHHHHHHHHHhc
Confidence 4567888888888888887665
No 71
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.48 E-value=8.7e-07 Score=100.72 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccce
Q 002613 86 EFEAIKHVKALTELGPHP-VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 86 ~erA~~~L~~L~~igpr~-~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
.+++.+.|++|.+|.... .++.++.++.+||.++++ | ++++++. . + .+..|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~--~--------~----------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVID--H--------G----------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEec--C--------C----------CCceE
Confidence 457889999999975431 222234688999999996 4 4455431 1 0 13468
Q ss_pred EEEEEcCCCCCcCCCCEEEEEeecccccC-------------------CCCCCCChhHHHHHHHHHHHHHhccCCCCCcE
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (900)
Q Consensus 165 VI~~i~g~~~~~~~~~~vLl~aH~DSv~~-------------------spGA~DdgsGVA~mLElaR~l~~~~~~p~~~I 225 (900)
++++ .|+ +.|++++|+|+||. ++|+.|+.+|+|+||.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8885 231 46999999999974 35999999999999999874 34689
Q ss_pred EEEEecCCCCCC-cchHHHHHc
Q 002613 226 IFLFNTGEEEGL-NGAHSFVTQ 246 (900)
Q Consensus 226 iflf~~aEE~gL-~GS~~fi~~ 246 (900)
.|+|+.+||.|. .|++.++.+
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~ 143 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLAR 143 (364)
T ss_pred EEEEEcccccCchhhHHHHHHh
Confidence 999999999886 687887764
No 72
>PLN02280 IAA-amino acid hydrolase
Probab=98.48 E-value=1.4e-06 Score=102.54 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=87.7
Q ss_pred HHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEE
Q 002613 90 IKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLR 168 (900)
Q Consensus 90 ~~~L~~L~~-igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~ 168 (900)
.+.|++|.+ +--+|--+.++.++.+||.++|+++| ++++.. ....|++++
T Consensus 96 ~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G------~~~~~~-----------------------~~~~~vva~ 146 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMG------IMYRYP-----------------------LAKTGIRAW 146 (478)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC------CeEEec-----------------------CCCCEEEEE
Confidence 344444444 22234345556789999999999998 444431 124699999
Q ss_pred EcCCCCCcCCCCEEEEEeecccccCC---------------CCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 169 IQPKYASEAAENAILVSSHIDTVFAA---------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 169 i~g~~~~~~~~~~vLl~aH~DSv~~s---------------pGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
+ |+ .+++.|++++|+|+||.+ .|-+.|+ ++|++|.+++.|++.+.+++.+|+|+|..+|
T Consensus 147 ~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~~~~~g~V~~if~pdE 220 (478)
T PLN02280 147 I-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSREHLLKGTVVLLFQPAE 220 (478)
T ss_pred E-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhccccCCceEEEEecccc
Confidence 8 53 133789999999999853 2333344 8999999999998766677889999999999
Q ss_pred CCCCcchHHHHHc
Q 002613 234 EEGLNGAHSFVTQ 246 (900)
Q Consensus 234 E~gL~GS~~fi~~ 246 (900)
|.|. |++.++++
T Consensus 221 E~g~-Ga~~li~~ 232 (478)
T PLN02280 221 EAGN-GAKRMIGD 232 (478)
T ss_pred cccc-hHHHHHHC
Confidence 9974 99998875
No 73
>PRK09864 putative peptidase; Provisional
Probab=98.48 E-value=6.2e-06 Score=93.28 Aligned_cols=123 Identities=21% Similarity=0.234 Sum_probs=81.2
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc-------------cC---------------
Q 002613 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-------------AG--------------- 248 (900)
Q Consensus 197 A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~-------------~G--------------- 248 (900)
|=||-.||++++|++|.+++ ++.++.|+|+.-||.|+.||+.-+.+ ++
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~PDiaIavDvt~~~d~p~~~~~~~~~~lG 248 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVIVLDTAVAGDVPGIDNIKYPLKLG 248 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCCCCEEEEEecccCCCCCCCcccccccccC
Confidence 78999999999999999964 77999999999999999999987665 00
Q ss_pred --C-----------ChhHHHHHHHhcCCCCcchhhhh---hhhcCCCC-CCCchHHHhhc-CCCcEEEEeecCCCCCCCC
Q 002613 249 --P-----------HPWAVENFAAAAKYPSGQVTAQD---LFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYHT 310 (900)
Q Consensus 249 --p-----------~~~li~~y~~~a~~P~~~~l~~~---~f~~g~ip-s~TD~~~F~~~-~giPgld~a~~~~~~~YHT 310 (900)
| ++.+.+...+ ++++ -+|....+ ..||-..+... .|+|.+.+.. +--+-||
T Consensus 249 ~Gp~i~~~D~~~i~~~~l~~~l~~---------~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isi--P~RY~Hs 317 (356)
T PRK09864 249 QGPGLMLFDKRYFPNQKLVAALKS---------CAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCL--PTRYLHA 317 (356)
T ss_pred CCCeEEEccCCccCCHHHHHHHHH---------HHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEee--ccCcCCC
Confidence 1 1111111111 1111 12322333 46776655332 6899888763 2234588
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 002613 311 KNDKLDLLKPGSLQHLGENMLAFLLQA 337 (900)
Q Consensus 311 ~~Dt~~~i~~~slq~~g~~~l~lv~~l 337 (900)
+. +.++.+.++++.+.+.+++..+
T Consensus 318 ~~---e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 318 NS---GMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred cc---eEeEHHHHHHHHHHHHHHHHhc
Confidence 86 4556777778887777777665
No 74
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=98.47 E-value=1.6e-06 Score=94.97 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=95.9
Q ss_pred CCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCC---------cchHHHHHccC
Q 002613 178 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGL---------NGAHSFVTQAG 248 (900)
Q Consensus 178 ~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL---------~GS~~fi~~~G 248 (900)
.++.++++||.|+|.+ |+.||-.|++...|+++.|...+ ...-++.++|||.|+ .||+.|.++.+
T Consensus 188 en~vv~i~AH~DHW~~--G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k 261 (486)
T COG4882 188 ENGVVLIGAHLDHWYT--GFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESK 261 (486)
T ss_pred CCCceEEeechhhhhh--cccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCcceeecccchHHHhhcC
Confidence 5678999999999975 99999999999999999998743 456677899999986 47777877755
Q ss_pred CChhHHHHHHH--hc--------CCCCcchhhhhhhhcCC-CC-CCCchHHHhhcCCCcEEEEeecCC---CCCCCCCCC
Q 002613 249 PHPWAVENFAA--AA--------KYPSGQVTAQDLFASGA-IT-SATDFQVYKEVAGLSGLDFAYTDK---SAVYHTKND 313 (900)
Q Consensus 249 p~~~li~~y~~--~a--------~~P~~~~l~~~~f~~g~-ip-s~TD~~~F~~~~giPgld~a~~~~---~~~YHT~~D 313 (900)
+.+- +++|.+ .+ ..|.---.+.+.++.-. -| .-.|-..|.. .|||++.+....+ +..|||+.|
T Consensus 262 ~~~~-v~~~VN~Dv~g~~~lv~~~~P~L~e~~~~~g~~~vespe~y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~D 339 (486)
T COG4882 262 AAEE-VEAYVNFDVAGYRCLVASGAPQLVEHALEAGAVEVESPEPYCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTPRD 339 (486)
T ss_pred Cchh-hhheeccccccccchhhhcChHHHHHHHHhCCceecCCCcccchhhhhh-cCCCeeEeeeccCCCccceecCCCC
Confidence 4221 122211 00 01111111222222100 11 2467677776 9999999986653 468999999
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHc
Q 002613 314 KLDLLKPGSLQHLGENMLAFLLQAAS 339 (900)
Q Consensus 314 t~~~i~~~slq~~g~~~l~lv~~la~ 339 (900)
|+... ...-+++..+.++++
T Consensus 340 tpa~~------~n~~t~~d~a~r~v~ 359 (486)
T COG4882 340 TPASW------DNAWTAVDAAVRTVT 359 (486)
T ss_pred CchhH------HHHHHHHHHHHHHHh
Confidence 99533 222345556666664
No 75
>PLN02693 IAA-amino acid hydrolase
Probab=98.46 E-value=1.9e-06 Score=100.29 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEE
Q 002613 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (900)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~ 167 (900)
++.+..++|-+ +|--|-++.++.+||.++|+++| +++++. ....|+++
T Consensus 48 ~~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G------~~~~~~-----------------------~~~~~via 95 (437)
T PLN02693 48 WMVRIRRKIHE---NPELGYEEFETSKLIRSELDLIG------IKYRYP-----------------------VAITGIIG 95 (437)
T ss_pred HHHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCC------CeeEec-----------------------CCCcEEEE
Confidence 34444555554 45556567789999999999998 344321 12479999
Q ss_pred EEcCCCCCcCCCCEEEEEeecccccCCC-----------C---CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCC
Q 002613 168 RIQPKYASEAAENAILVSSHIDTVFAAE-----------G---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (900)
Q Consensus 168 ~i~g~~~~~~~~~~vLl~aH~DSv~~sp-----------G---A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aE 233 (900)
++.+ .+.+.|++.+|+|+||... | +-|..+++|++|.+++.|++.+.+.+.+|+|+|..+|
T Consensus 96 ~~g~-----~~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdE 170 (437)
T PLN02693 96 YIGT-----GEPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAE 170 (437)
T ss_pred EECC-----CCCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcc
Confidence 9832 1357899999999998531 2 5566679999999999998866566789999999999
Q ss_pred CCCCcchHHHHHc
Q 002613 234 EEGLNGAHSFVTQ 246 (900)
Q Consensus 234 E~gL~GS~~fi~~ 246 (900)
| +..|++.++++
T Consensus 171 E-~~~Ga~~~i~~ 182 (437)
T PLN02693 171 E-GLSGAKKMREE 182 (437)
T ss_pred c-chhhHHHHHHC
Confidence 9 44688888764
No 76
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.43 E-value=1.7e-06 Score=96.60 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=110.6
Q ss_pred cccceEEEEEc-CCC--CCcCCCCEEEEEeeccccc----CCCCCCCChhHHHHHHHHHHHHHhc----cCCCCCcEEEE
Q 002613 160 SDLNHIVLRIQ-PKY--ASEAAENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFL 228 (900)
Q Consensus 160 ~~~~NVI~~i~-g~~--~~~~~~~~vLl~aH~DSv~----~spGA~DdgsGVA~mLElaR~l~~~----~~~p~~~Iifl 228 (900)
..+.||.++++ |-. .+++.-|.|++.||||+.. .++||+-||+||+++||++|.+++- ..+.++++.|+
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 47899999998 421 0124569999999999975 3689999999999999999999882 35679999999
Q ss_pred EecCCCCCCcchHHHHHccC--------------C-ChhHHHHHHHhcCCCCcchhhhhhhhc--------C--------
Q 002613 229 FNTGEEEGLNGAHSFVTQAG--------------P-HPWAVENFAAAAKYPSGQVTAQDLFAS--------G-------- 277 (900)
Q Consensus 229 f~~aEE~gL~GS~~fi~~~G--------------p-~~~li~~y~~~a~~P~~~~l~~~~f~~--------g-------- 277 (900)
+++|.-...+|++.|++-.. . +.|.-+.|.+..+-|--++....+|+. +
T Consensus 271 lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~khk 350 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHK 350 (555)
T ss_pred EccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEEEee
Confidence 99999999999999998500 0 111112233334445344443333321 0
Q ss_pred CCC--C---CCchHHHhhcCCCcEEEEeecCCC--CCCCCCC-CCcCCCCHHHHHHHHHHH
Q 002613 278 AIT--S---ATDFQVYKEVAGLSGLDFAYTDKS--AVYHTKN-DKLDLLKPGSLQHLGENM 330 (900)
Q Consensus 278 ~ip--s---~TD~~~F~~~~giPgld~a~~~~~--~~YHT~~-Dt~~~i~~~slq~~g~~~ 330 (900)
.|. + .=.|.-|.- .-+|++.+...... ..-.+-. |+...+|.++|-+..+.+
T Consensus 351 kInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlI 410 (555)
T KOG2526|consen 351 KINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLI 410 (555)
T ss_pred eEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHH
Confidence 011 1 113556654 56888887765322 2223333 888888888777543333
No 77
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=98.08 E-value=0.00013 Score=81.64 Aligned_cols=214 Identities=20% Similarity=0.204 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCC-CCHHHH--HHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccc
Q 002613 83 GFSEFEAIKHVKALTE----LGPHPV-GSDALD--RALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGR 155 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~----igpr~~-GS~~~~--~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~ 155 (900)
..+.++.++||..+-+ |..|.. .++..- .+.+ +++++. ..+++|.+|.-.. .|
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~~----~~~~L~---dg~Y~V~IdS~l~-------~G------ 115 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSHN----QLDALP---DGEYEVVIDSTLE-------DG------ 115 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--HH----HHHT-----SSEEEEEEEEEEE-------S-------
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCHH----HHhhCC---CCceEEEEeeeec-------CC------
Confidence 5788899999988876 222322 222111 1222 223333 1347777764322 11
Q ss_pred cccccccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCC
Q 002613 156 TLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE 235 (900)
Q Consensus 156 ~~~y~~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~ 235 (900)
...|. -..++|+ +++-|++++|.++- + -|+||-||+|++.+++|.|++. +.+.+..|+|-.
T Consensus 116 ~L~yg-----E~~ipG~-----s~~EillsthiCHP--s-mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P---- 176 (386)
T PF09940_consen 116 SLTYG-----EFVIPGE-----SDEEILLSTHICHP--S-MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP---- 176 (386)
T ss_dssp EEEEE-----EEEE--S-----SS-EEEEEEE------S--TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----
T ss_pred ceeEE-----EEEecCC-----CCCeEEEEEeccCc--c-cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----
Confidence 12232 3356774 66789999999986 3 5999999999999999999984 445999999987
Q ss_pred CCcchHHHHHc-----------------cCCChhHHHHHHHhcCCCCcchhh----hhh-------hh-cCCCCCCCchH
Q 002613 236 GLNGAHSFVTQ-----------------AGPHPWAVENFAAAAKYPSGQVTA----QDL-------FA-SGAITSATDFQ 286 (900)
Q Consensus 236 gL~GS~~fi~~-----------------~Gp~~~li~~y~~~a~~P~~~~l~----~~~-------f~-~g~ips~TD~~ 286 (900)
+-.||-.|+.+ .|.+.-. .|+. .+.+++.+ ..+ |+ ....|.++|-|
T Consensus 177 eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~--syk~---Sr~g~~~iDr~~~~vl~~~~~~~~~~~F~~~GsDER 251 (386)
T PF09940_consen 177 ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAY--SYKR---SRRGNTLIDRAAAHVLKHSGPNFKIYDFLPRGSDER 251 (386)
T ss_dssp TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-E--EEE-----TTSSSHHHHHHHHHHHHSSS-EEEE---S-SSTHH
T ss_pred ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCc--ceec---CCCCCcHHHHHHHHHHHhcCCCceEecccccCCCcc
Confidence 46899998887 1110000 0110 11111111 111 11 13567899999
Q ss_pred HHhhc-CCCcEEEEee--cCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002613 287 VYKEV-AGLSGLDFAY--TDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 340 (900)
Q Consensus 287 ~F~~~-~giPgld~a~--~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~s 340 (900)
.|-.- -++|-..+.- ++.-+.|||..|+++.|+++.|+..-+.++..+.-|=+.
T Consensus 252 QfcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 252 QFCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HHTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eeecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99761 1234333321 122357999999999999999999888888888877654
No 78
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=97.83 E-value=7.1e-05 Score=84.47 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcc-ccCCcceEEEEeeeccCCcccccccccccccccccc
Q 002613 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKE-TKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (900)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~-~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~ 161 (900)
..|.||+++..-.|++. |-..||+++..-.++|+.-|.++-. +.++ .|.+... +. +..| .
T Consensus 4 ~is~e~v~~lt~~LV~~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehp-----ed~~~~p-----i~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVSW-PSVTGTPGEGAFADRLLGVLGELPYFQEHP-----EDLWLQP-----IH-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHeec-cccCCCcccccHHHHHHHHHhcCchhhhCh-----HhhcccC-----CC-------CCcc-c
Confidence 35689999999999984 7789999998889999999888752 0111 1111110 00 1122 5
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEEeecccccC------------------------------------------CCCCCC
Q 002613 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------AEGAGD 199 (900)
Q Consensus 162 ~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~------------------------------------------spGA~D 199 (900)
..||.+-++|. ++++.|++.+|||+|.. +.|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 68999999984 57789999999999852 479999
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHH
Q 002613 200 CSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (900)
Q Consensus 200 dgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~ 245 (900)
+.+|.|+-|..+.-+++. ...+.+|.|+.+..||..-.|.+.-+.
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~ 185 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARP 185 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHH
Confidence 999999999999999886 567889999999999998777766543
No 79
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00058 Score=76.72 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCccccccccccccccccc
Q 002613 85 SEFEAIKHVKALTELGPHPVGSD----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~----~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
.-++..+.|++..+|.. ...-+ .-.+..+|+.++++++|. +++.- +- |.....+| .+.
T Consensus 14 ~~de~~~~L~e~v~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~------~~~l~--dl--g~q~~~~g-------~~v 75 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQS-VSADPTKRLEVRRMADWLRDYLTKLGA------PLELV--DL--GYQSLPDG-------QIV 75 (473)
T ss_pred cHHHHHHHHHHHhcccc-cccCccccHHHHHHHHHHHHHHHHhCC------ceeee--ec--ccCCCCCC-------ccc
Confidence 45788888998888744 22222 235889999999999993 22221 10 00000010 111
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccC---------------------CCCCCCChhHHHHHHHHHHHHHhccC
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 219 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~---------------------spGA~DdgsGVA~mLElaR~l~~~~~ 219 (900)
...-++--.-|+ +++++.+++-.|+|-+|. +.|++||..-|+.-+++++++.+.+.
T Consensus 76 ~lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~ 152 (473)
T KOG2276|consen 76 PLPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI 152 (473)
T ss_pred ccChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCc
Confidence 112122112243 457789999999999874 47999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 220 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 220 ~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
.++.+|+|+|-+-||.|..|-...+..
T Consensus 153 ~lpvnv~f~~EgmEEsgS~~L~~l~~~ 179 (473)
T KOG2276|consen 153 DLPVNVVFVFEGMEESGSEGLDELIEK 179 (473)
T ss_pred cccceEEEEEEechhccCccHHHHHHH
Confidence 999999999999999988887766554
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.03 E-value=0.0011 Score=73.31 Aligned_cols=48 Identities=35% Similarity=0.451 Sum_probs=42.8
Q ss_pred CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 197 A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
|-||-+||++++|++|.+++. +.+.++.|+|+..||.|+.||+..+.+
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~ 179 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFR 179 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHH
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeecccc
Confidence 678999999999999999874 456999999999999999999987776
No 81
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=96.58 E-value=0.015 Score=63.55 Aligned_cols=144 Identities=21% Similarity=0.297 Sum_probs=98.0
Q ss_pred CCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHHHHc-----------
Q 002613 178 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ----------- 246 (900)
Q Consensus 178 ~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~fi~~----------- 246 (900)
.+..||+.+|.-+.. =|+||-||+|.+.-+++.|+.. +-+.+..|+|-. +-.||-.|..+
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 556799999998863 5899999999999999999874 467888998866 34688777776
Q ss_pred ---------cCCC-------hhHHHHHH-HhcCCCCcchhhhhhhhcCCCCCCCchHHHhhcCCCcEEEEe-------ec
Q 002613 247 ---------AGPH-------PWAVENFA-AAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFA-------YT 302 (900)
Q Consensus 247 ---------~Gp~-------~~li~~y~-~~a~~P~~~~l~~~~f~~g~ips~TD~~~F~~~~giPgld~a-------~~ 302 (900)
.||+ ..+++-.+ +.-+|-- .+..-...+|-++|-|.|.. ||+++- -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~-----s~~~~~dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG-----SNFKAADFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCC-----cCceeeecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 1221 01111111 1001100 01111236888999999865 555542 23
Q ss_pred CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHc
Q 002613 303 DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS 339 (900)
Q Consensus 303 ~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~ 339 (900)
++-+-|||..|+.+.|+++.|..--+.++.++..+-+
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~ 355 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEI 355 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHh
Confidence 4456899999999999999888877788887777765
No 82
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.34 E-value=0.044 Score=63.46 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHHHhcc-CCCCCcEEEEEecCCCCCCcchHHHHHc
Q 002613 198 GDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (900)
Q Consensus 198 ~DdgsGVA~mLElaR~l~~~~-~~p~~~Iiflf~~aEE~gL~GS~~fi~~ 246 (900)
.||.+|.+.++++++++.+.. .-+..+|.+.|+++||.|+.|++.|.-.
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a 192 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA 192 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH
Confidence 477899999999999999653 3455689999999999999998866543
No 83
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.024 Score=65.69 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=104.3
Q ss_pred ccceEEEEEcCCCCC---cCCCCEEEEEeeccccc----CCCCCCCChhHHHHHHHHHHHHHhcc--CCCCCcEEEEEec
Q 002613 161 DLNHIVLRIQPKYAS---EAAENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQWA--HGFKNAVIFLFNT 231 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~---~~~~~~vLl~aH~DSv~----~spGA~DdgsGVA~mLElaR~l~~~~--~~p~~~Iiflf~~ 231 (900)
...||...+++-... +.-.++++..+-+||-. .++||..--.+.+..|..+|++++.+ ...+++|.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 345666555442111 12268999999999953 46788778889999999999998743 4678999999999
Q ss_pred CCCCCCcchHHHHHc--cCCChhH-------------------------------------------HHHHHHh-cCCCC
Q 002613 232 GEEEGLNGAHSFVTQ--AGPHPWA-------------------------------------------VENFAAA-AKYPS 265 (900)
Q Consensus 232 aEE~gL~GS~~fi~~--~Gp~~~l-------------------------------------------i~~y~~~-a~~P~ 265 (900)
||-.+.+||..++-+ .|..|.. ++.+++. +.|++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 999999999987776 2211100 0111111 01111
Q ss_pred cchhhhhhhhcCCCCCCCchHHHhhcCCCcEEEEeecCC---CCCCCCCCCCcCCCCHHHH
Q 002613 266 GQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKPGSL 323 (900)
Q Consensus 266 ~~~l~~~~f~~g~ips~TD~~~F~~~~giPgld~a~~~~---~~~YHT~~Dt~~~i~~~sl 323 (900)
.- +.++- ++.-+|..+=++..|+..++.++-++-++. ..+||+.+|+.|+|+...-
T Consensus 316 ~l-l~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 DL-LKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred ee-ecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 10 00000 011345555556666568899999886653 3589999999999988654
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.21 E-value=0.26 Score=57.00 Aligned_cols=114 Identities=19% Similarity=0.290 Sum_probs=84.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCcccccccccccccccccccceEEEEEcCCCCCcCC
Q 002613 99 LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAA 178 (900)
Q Consensus 99 igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~f~~~~g~~~~~gg~~~~~~~~y~~~~NVI~~i~g~~~~~~~ 178 (900)
+--+|--+-++.++.+||.+.|+++| +++... + ...+=+++.+.|. .+
T Consensus 21 lH~~PEL~f~E~~Ta~~i~~~L~~~g------~~~~~~------------~----------~~~TGvva~~~~g----~~ 68 (392)
T COG1473 21 LHEHPELGFEEYRTAAYIAEKLEELG------FEVVEV------------G----------GGKTGVVATLKGG----KP 68 (392)
T ss_pred HhhCCccchhHHHHHHHHHHHHHHcC------CeeEec------------c----------CCceEEEEEEcCC----CC
Confidence 44456666677799999999999999 341110 1 0134588899864 34
Q ss_pred CCEEEEEeecccccC-----------CCC----CCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHH
Q 002613 179 ENAILVSSHIDTVFA-----------AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSF 243 (900)
Q Consensus 179 ~~~vLl~aH~DSv~~-----------spG----A~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~f 243 (900)
.+.|.+-|-||-.|. -|| -+-|+- ++++|-+++.|++....++.+|+|+|-.|||.+- |+...
T Consensus 69 g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~H-ta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~m 146 (392)
T COG1473 69 GPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGH-TAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAM 146 (392)
T ss_pred CCEEEEEeecccCccccccCCCcccCCCCCcccCCchHH-HHHHHHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHH
Confidence 569999999999883 133 233333 6788999999998666789999999999999877 88888
Q ss_pred HHc
Q 002613 244 VTQ 246 (900)
Q Consensus 244 i~~ 246 (900)
+++
T Consensus 147 i~~ 149 (392)
T COG1473 147 IED 149 (392)
T ss_pred Hhc
Confidence 875
No 85
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=89.27 E-value=1.1 Score=53.75 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=59.1
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcch
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS 240 (900)
+++|+++.++.. ..++.+++++.+-+++.. | .-|..|++.+|.++|.+++... -.++|+|++.+.|. .|.
T Consensus 2 ~G~nvy~i~rap--R~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~~---~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAP--RGDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDEL---AGM 71 (504)
T ss_pred CceEEEEEEecC--CCCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCcc---hHH
Confidence 468999998753 145678899999988652 2 4458899999999999998643 47999999998654 678
Q ss_pred HHHHHc
Q 002613 241 HSFVTQ 246 (900)
Q Consensus 241 ~~fi~~ 246 (900)
++|+++
T Consensus 72 ~awl~~ 77 (504)
T PF04114_consen 72 QAWLEA 77 (504)
T ss_pred HHHHHH
Confidence 888876
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=76.70 E-value=3.5 Score=48.88 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=38.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcchHHH
Q 002613 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSF 243 (900)
Q Consensus 195 pGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS~~f 243 (900)
-++-||-.||.+++|+++... .++..+++++++-||.|+.|+++-
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA 300 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGA 300 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhh
Confidence 478999999999999998754 356799999999999999888754
No 87
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=27 Score=42.17 Aligned_cols=75 Identities=20% Similarity=0.378 Sum_probs=55.2
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEEeecccccCCCCCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCcch
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (900)
Q Consensus 161 ~~~NVI~~i~g~~~~~~~~~~vLl~aH~DSv~~spGA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~GS 240 (900)
.+.||++.+++.. .++.+.+++..-|+.- .|. |-.||+.++.+++.++++. --.++|+|++++++ ..|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~---~~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~~---~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRS---SGS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDGP---ALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccC---CCc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCCc---cccH
Confidence 3789999997641 3566789998888764 233 3668999999999998753 25789999999983 4555
Q ss_pred HHHHHc
Q 002613 241 HSFVTQ 246 (900)
Q Consensus 241 ~~fi~~ 246 (900)
.+|.+.
T Consensus 188 ~AwLea 193 (617)
T KOG3566|consen 188 DAWLEA 193 (617)
T ss_pred HHHHHH
Confidence 566554
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=58.78 E-value=7.9 Score=45.51 Aligned_cols=41 Identities=27% Similarity=0.174 Sum_probs=35.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCCCCCc---chH
Q 002613 196 GAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN---GAH 241 (900)
Q Consensus 196 GA~DdgsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE~gL~---GS~ 241 (900)
++-||-+||.+++|+++.+.+ +..+++++++-||.|+. ||+
T Consensus 231 ~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~ 274 (428)
T PRK02813 231 GRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGAD 274 (428)
T ss_pred ecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccC
Confidence 678999999999999987632 67999999999999998 665
No 89
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=56.51 E-value=3.5e+02 Score=32.17 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh
Q 002613 554 PRPLKLATLLLGLAVPVLVSAG--NFIRLANVIVAIV 588 (900)
Q Consensus 554 ~~~~~~~~~~~~~~~P~l~~~~--~~~~~~~v~ip~~ 588 (900)
.++-.|...-+ +..|+++... .++-.+.+.+|+|
T Consensus 315 ~~y~~w~~~r~-~~~p~~~~~~~~vi~pi~~~~~p~~ 350 (477)
T PRK12821 315 QTYAFWLLIRL-LFAPAIFLLDIIVIYPILLLLTPIM 350 (477)
T ss_pred CcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443343334 7788886543 3334455556665
No 90
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=49.22 E-value=18 Score=43.00 Aligned_cols=49 Identities=10% Similarity=-0.047 Sum_probs=35.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhcc-CCCCCcEEEEEecCCCCCCcchHHHH
Q 002613 196 GAGDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFV 244 (900)
Q Consensus 196 GA~DdgsGVA~mLElaR~l~~~~-~~p~~~Iiflf~~aEE~gL~GS~~fi 244 (900)
++-||-.||.++||+++...... ..+....++++++-||.|..|+++-.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~ 297 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAG 297 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhcc
Confidence 67899999999999998765310 11344455555999999999887653
No 91
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=42.92 E-value=2.4e+02 Score=26.93 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=34.0
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 002613 395 ASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 444 (900)
Q Consensus 395 ~sl~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~vA~~~~~~~~~~~sw~ 444 (900)
..+.+.+.....++.....+.+.....+...++++|.++.+- +..|++.
T Consensus 32 ~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 32 FTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 344444444456666666666667788888889999999865 6888875
No 92
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=39.44 E-value=9.8 Score=41.80 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEEEcC-CCCceEEEEEEEe
Q 002613 813 HIIQFSGG-KNAVSKFDLDLYW 833 (900)
Q Consensus 813 ~~i~~s~G-~~~P~~F~lel~~ 833 (900)
|-..=+-| +..|-+-.=+.+.
T Consensus 313 ~np~Ds~GndggPp~Lt~~ve~ 334 (381)
T PF05297_consen 313 HNPCDSAGNDGGPPKLTEEVEN 334 (381)
T ss_dssp ----------------------
T ss_pred CCCccccCCCCCCCcccccccc
Confidence 44443444 5555554444444
No 93
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=33.67 E-value=1e+03 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002613 448 WLAVGLFAAPAFLGALTGQHLGYIILK 474 (900)
Q Consensus 448 ~l~igLy~~pa~~g~~~~~~l~~~~~~ 474 (900)
.|+.|+|+...++-..+|.+.+|..+.
T Consensus 148 ml~~giy~~~~l~~~~ip~~~gff~l~ 174 (952)
T TIGR02921 148 MLLFGIYAAALLAFFAIPAAAGFFELL 174 (952)
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 467888888777777777777666553
No 94
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=31.84 E-value=51 Score=27.00 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 002613 626 VHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSE 660 (900)
Q Consensus 626 i~~~~~~~~i~~~l~~v~~~~~~~~~~~~~fPf~~ 660 (900)
..+++|.|.-+.++.++.+++++.+..+...||++
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45666666666566555555555566677778853
No 95
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.33 E-value=7.8e+02 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002613 560 ATLLLGLAVPVLVSAGNFIRLANVIVAIVVR 590 (900)
Q Consensus 560 ~~~~~~~~~P~l~~~~~~~~~~~v~ip~~gR 590 (900)
..+.-.++.|+++...+....-.++.|.++|
T Consensus 188 ~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 188 YTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 4445556778887777666666666677666
No 96
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=26.06 E-value=4.4e+02 Score=24.73 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.5
Q ss_pred HHhhcCCCCCCCh
Q 002613 545 EATLTPVRFPRPL 557 (900)
Q Consensus 545 ~~~l~~~~~~~~~ 557 (900)
.....+.|+.+..
T Consensus 64 al~vRRlhD~G~s 76 (120)
T PF05656_consen 64 ALTVRRLHDIGRS 76 (120)
T ss_pred HHHhhhhhcCCCC
Confidence 4445667776544
No 97
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=25.73 E-value=1.2e+03 Score=27.97 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 002613 558 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDR 593 (900)
Q Consensus 558 ~~~~~~~~~~~P~l~~~~~~~~~~~v~ip~~gR~g~ 593 (900)
|....+++.+-|++..+++=+.+.++.+....+.|.
T Consensus 303 ~ig~~i~g~~~~~lV~~G~H~~~~pi~~~~i~~~G~ 338 (473)
T PRK11007 303 PIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGG 338 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Confidence 456677777888888888877777777776666664
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.36 E-value=23 Score=38.99 Aligned_cols=9 Identities=33% Similarity=1.232 Sum_probs=0.0
Q ss_pred chHHHHHHH
Q 002613 527 TFIALFWLV 535 (900)
Q Consensus 527 aY~~~~~~~ 535 (900)
.-.=++|++
T Consensus 166 ~L~dL~WL~ 174 (381)
T PF05297_consen 166 ILVDLYWLL 174 (381)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333344544
No 99
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=25.22 E-value=1.1e+02 Score=35.07 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCCchHHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002613 280 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 340 (900)
Q Consensus 280 ps~TD~~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~s 340 (900)
...||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+....++.+|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 35799999987 79999866432 223568766 7888999999999999999999864
No 100
>PRK08126 hypothetical protein; Provisional
Probab=24.13 E-value=1.3e+03 Score=27.53 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=33.0
Q ss_pred EEEEEeecccccCCCCC-CCC-hhHHHHHHHHHHHHHhccCCCCCcEEEEEecCCC
Q 002613 181 AILVSSHIDTVFAAEGA-GDC-SSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (900)
Q Consensus 181 ~vLl~aH~DSv~~spGA-~Dd-gsGVA~mLElaR~l~~~~~~p~~~Iiflf~~aEE 234 (900)
.|.|.+|.|+.+...|. .+| .-+.+=.-.+.++|.+.|.+ ...|.....+..+
T Consensus 355 ~I~V~GHTD~~p~~s~~~~~N~~LS~~RA~aV~~~L~~~Gv~-~~ri~~~G~G~~~ 409 (432)
T PRK08126 355 KVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVP-ASRLEAVGKGDAQ 409 (432)
T ss_pred eEEEEEecCCCCccCCccchHHHHHHHHHHHHHHHHHHcCCC-HHHeEEEEecCcC
Confidence 69999999998754343 223 33566666677777766543 3456555555444
No 101
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=24.12 E-value=1e+03 Score=26.46 Aligned_cols=33 Identities=15% Similarity=0.508 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 002613 410 LTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYVAN 446 (900)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~vA~~~~~~~~~~~sw~s~ 446 (900)
+.++..+++++.++++.. .+.. ..+..++|+..
T Consensus 172 ~~l~~~~~~~~~~~g~~~---~~~~-~~~~~~~~~~~ 204 (333)
T PF03176_consen 172 LPLLPVLLSIVWTLGLVA---LLMG-LLGIPLSWITP 204 (333)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHH-hhccccceeeh
Confidence 344444555555544411 1111 22456677644
No 102
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=23.80 E-value=1.5e+03 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 002613 558 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDR 593 (900)
Q Consensus 558 ~~~~~~~~~~~P~l~~~~~~~~~~~v~ip~~gR~g~ 593 (900)
|....+++.+-|++..+++=+.+.++.+..+...|.
T Consensus 289 ~i~g~i~g~~~~~lV~~G~H~~l~pi~~~~ia~~G~ 324 (627)
T PRK09824 289 AFAGAVMGAFWQVFVIFGLHWGLVPLMINNLTVLGH 324 (627)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhCc
Confidence 455667777888888888878887777777666664
No 103
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=20.62 E-value=1.9e+02 Score=26.67 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhcccccc
Q 002613 52 FAAFVYATYGVYYYQYEH 69 (900)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~ 69 (900)
.++++-..|.++.|....
T Consensus 39 ~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 39 GLMLLGLLWIVVYYISGG 56 (87)
T ss_pred HHHHHHHHHHhhhhcccC
Confidence 334444456676666543
No 104
>PRK08596 acetylornithine deacetylase; Validated
Probab=20.30 E-value=1.5e+02 Score=34.45 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCCchHHHhhcCCCcEEEEeecCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002613 280 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 340 (900)
Q Consensus 280 ps~TD~~~F~~~~giPgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~s 340 (900)
+..||...|.+ .|+|.+.+.... ....|++. |+++.+.+.+..+.+..++.++...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999988 899999776542 34679876 7889999999999999999988754
Done!