Query 002613
Match_columns 900
No_of_seqs 346 out of 2137
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 15:45:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002613.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1333-1336//hhsearch_pdb/002613hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuu_A Leucine aminopeptidase; 1.0 1 1 302.2 21.4 228 81-336 19-307 (309)
2 4f9u_A CG32412; alpha/beta hyd 1.0 1 1 277.6 24.0 237 83-345 7-305 (312)
3 4fai_A CG5976, isoform B; alph 1.0 1 1 267.6 21.1 228 85-338 36-323 (330)
4 3tc8_A Leucine aminopeptidase; 1.0 1 1 266.0 22.4 224 81-336 19-308 (309)
5 3gux_A Putative Zn-dependent e 1.0 1 1 257.7 22.5 226 81-336 21-312 (314)
6 3pb6_X Glutaminyl-peptide cycl 1.0 1 1 253.2 19.6 242 68-338 16-328 (330)
7 2afw_A Glutaminyl-peptide cycl 1.0 1 1 248.5 16.6 243 67-338 9-327 (329)
8 3kas_A Transferrin receptor pr 1.0 1 1 244.2 14.9 184 159-347 263-491 (640)
9 3fed_A Glutamate carboxypeptid 1.0 1 1 237.1 16.1 184 158-346 308-553 (707)
10 1tkj_A Aminopeptidase, SGAP; d 1.0 1 1 229.1 24.9 227 82-344 2-282 (284)
No 1
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=302.15 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=174.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999988269999999889999999999999511014784018999662357863233454456201114
Q 002613 81 KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 81 ~~~fs~erA~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
.++||++||+++|+.|+++|||++||++++++++||+++++++| .+++.|.|..... ...+.
T Consensus 19 ~p~f~~~~a~~~l~~l~~fgpR~~gS~~~~~a~~~i~~~l~~~g------~~v~~q~~~~~~~------------~~~~~ 80 (309)
T 4fuu_A 19 VPQFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFG------AKVTNQYADLIAY------------DGTLL 80 (309)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEECT------------TSCEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEEECCC------------CCCCC
T ss_conf 77629999999999986769948999899999999999999859------8268886774067------------78724
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 5246999982788785798879998304665699-------------998898107999999999998526999970899
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (900)
Q Consensus 161 ~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~s-------------pGA~DdgsGVA~lLE~aR~L~~~~~~p~~~Iif 227 (900)
+..|||++++|+ .++.|+|+|||||++.+ |||+|||||||+|||++|.|.+ .+++++|+|
T Consensus 81 ~~~Nii~~~~g~-----~~~~i~l~aH~Ds~~~~~~~~~~~~~~~~~~GA~D~aSG~a~lLE~ar~l~~--~~~~~~i~~ 153 (309)
T 4fuu_A 81 KARNIIGSYKPE-----SKKRIALFAHWDTRPWADNDADEKNHHTPILGANDGASGVGALLEIARLVNQ--QQPELGIDI 153 (309)
T ss_dssp EEEEEEEEESTT-----CSSEEEEEEECCCCSCCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHH--SCCSSEEEE
T ss_pred EEEEEEEEECCC-----CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCCCCEEE
T ss_conf 068999997899-----9844899841477777877654444567767824673539999999999763--077875688
Q ss_pred EEECCCCCCC--------------CCHHHHHHC----------------CC-CCH-------------HHHHHHHHHCCC
Q ss_conf 9946997898--------------540899870----------------09-970-------------479998873289
Q 002613 228 LFNTGEEEGL--------------NGAHSFVTQ----------------AG-PHP-------------WAVENFAAAAKY 263 (900)
Q Consensus 228 lf~~aEE~gL--------------~GS~~fi~~----------------~G-p~~-------------~li~~y~~~a~~ 263 (900)
+||+|||.|+ +||+.|+++ .| +++ .+.+...+....
T Consensus 154 ~~~~~EE~Gl~~~~~~~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlDmvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (309)
T 4fuu_A 154 IFLDAEDYGTPQFYEGKHKEEAWCLGSQYWSRNPHVQGYNARFGILLDMVGGENSVFLKEGYSEEFAPDINKKVWKAAKK 233 (309)
T ss_dssp EEECSSSCCCCTTCCSCCCGGGSCHHHHHHHHSCSSTTCCCSEEEEECSCCBTTCCEEECHHHHHHCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 86333335753531330033334301057875653567626999964136789873675047636669999999999875
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEECCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97302346532169999998447874229980899754289----99899988994899987999999999999999
Q 002613 264 PSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDK----SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 336 (900)
Q Consensus 264 P~~~~l~~~~f~~g~ips~TD~~~F~~~~gipgld~a~~~~----~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~ 336 (900)
.... .....+.+ ....+||.+|.+.+|||+++++.... .++|||+.||+|+||+++||++|+++++++++
T Consensus 234 ~~~~--~~~~~~~~-~~~~sDh~~F~~~~GIP~l~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly~ 307 (309)
T 4fuu_A 234 AGYG--KTFIDERG-DTITDDHLFINRLARIKTIDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYN 307 (309)
T ss_dssp TTCT--TTEEEEEC-CCCCCHHHHHHHHTCCCEEEECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred CCCC--CCCCCCCC-CCCCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 2776--44344679-99989769999628997899751478887989999953361448999999999999999840
No 2
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=1.00 E-value=1 Score=277.63 Aligned_cols=237 Identities=20% Similarity=0.299 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999998826999999988999999999999951101478401899966235786323345445620111452
Q 002613 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (900)
Q Consensus 83 ~fs~erA~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~~~y~~~ 162 (900)
.-......+.|+.| ++||++||++++++++||+++++++| .++++|.|..... .....+.
T Consensus 7 ~d~~~~~~~~l~~i--l~PR~~gs~~~~~~~~~i~~~l~~~g------~~v~~~~f~~~~~------------~~~~~~~ 66 (312)
T 4f9u_A 7 RDDEVHFNRTLDSI--LVPRVVGSRGHQQVREYLVQSLNGLG------FQTEVDEFKQRVP------------VFGELTF 66 (312)
T ss_dssp CCCHHHHHHHHHHH--CSCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEEET------------TTEEEEE
T ss_pred CCHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEEEECC------------CCCCEEE
T ss_conf 47799999998885--58989879899999999999999889------9699986897557------------7886368
Q ss_pred CEEEEEECCCCCCCCCCCEEEEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCCCCEEEEEECC
Q ss_conf 469999827887857988799983046656-----999988981079999999999985-----2699997089999469
Q 002613 163 NHIVLRIQPKYASEAAENAILVSSHIDTVF-----AAEGAGDCSSCVAVMLELARAMSQ-----WAHGFKNAVIFLFNTG 232 (900)
Q Consensus 163 ~NViv~i~g~~~~~~~~~~ILl~aH~DSv~-----~spGA~DdgsGVA~lLE~aR~L~~-----~~~~p~~~Iiflf~~a 232 (900)
.|||++++|+ +++.|+|+|||||++ ..|||+|||||||+|||+||+|.+ .+.+|+++|+|+||+|
T Consensus 67 ~Nii~~~~~~-----~~~~vvl~aHyDs~~~~~~~~~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fda 141 (312)
T 4f9u_A 67 ANVVGTINPQ-----AQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDG 141 (312)
T ss_dssp EEEEEEESTT-----SSEEEEEEEECCCCCCTTCTTCCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESC
T ss_pred EEEEEEECCC-----CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 9999997899-----87538999998458877788878965776007999999999998787502689996089998567
Q ss_pred CCCC--------CCCHHHHHHC---CCCC------HHHHH---HHH--H--HCCCC--------------CCCHHHHHHH
Q ss_conf 9789--------8540899870---0997------04799---988--7--32899--------------7302346532
Q 002613 233 EEEG--------LNGAHSFVTQ---AGPH------PWAVE---NFA--A--AAKYP--------------SGQVTAQDLF 274 (900)
Q Consensus 233 EE~g--------L~GS~~fi~~---~Gp~------~~li~---~y~--~--~a~~P--------------~~~~l~~~~f 274 (900)
||.| |+||++|+++ .... ...++ .+. + ..+.+ ....+.+.+.
T Consensus 142 EE~G~~~~~~~~L~GS~~~a~~~~~~~~~~~~~~~~~~~~~i~~~inlDmvg~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (312)
T 4f9u_A 142 EEAFKEWTDADSVYGSKHLAAKLASKRSGSQAQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLR 221 (312)
T ss_dssp CSCSSSCSSSSSCHHHHHHHHHHHHCBC-------CBGGGGEEEEEEEESCCSSSCCEEECCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 60565677665322729999987762144212224355456113023201356898722787226104267999999999
Q ss_pred HCCC--------------CCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1699--------------99998447874229980899754289998999889948999879999999999999999729
Q 002613 275 ASGA--------------ITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 340 (900)
Q Consensus 275 ~~g~--------------ips~TD~~~F~~~~gipgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~s 340 (900)
+.+. -...+||.+|.+ .|||++++......++|||+.||+|+||+++++++++.+++++.+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~SDH~pF~~-~GIP~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~ 300 (312)
T 4f9u_A 222 TAGQLEGNNNMFLSRVSGGLVDDDHRPFLD-ENVPVLHLVATPFPDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKR 300 (312)
T ss_dssp HTTCSSSSCCCEEEEECSSCCCCTTHHHHT-TTCCEEEEECSSCCTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 841343456554454679998882599998-7999899878889888989735745599999999999999999999847
Q ss_pred CCCCC
Q ss_conf 99999
Q 002613 341 TSLPK 345 (900)
Q Consensus 341 ~~l~~ 345 (900)
...|.
T Consensus 301 ~~~P~ 305 (312)
T 4f9u_A 301 HTSPV 305 (312)
T ss_dssp CCSCC
T ss_pred CCCCC
T ss_conf 89877
No 3
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=1.00 E-value=1 Score=267.62 Aligned_cols=228 Identities=21% Similarity=0.313 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99999999999882699999998899999999999995110147840189996623578632334544562011145246
Q 002613 85 SEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (900)
Q Consensus 85 s~erA~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (900)
..++..++|+.| ++||++||++++++++||.++++++| .+++.|.|..... .+ ...+..|
T Consensus 36 ~~~~~~~~l~~i--l~pR~~Gs~~~~~~~~~i~~~l~~~g------~~v~~q~f~~~~~----~~--------~~~~~~N 95 (330)
T 4fai_A 36 DKLHLREAIDKI--LIPRVVGTTNHSIVREYIVQSLRDLD------WDVEVNSFHDHAP----IK--------GKLHFHN 95 (330)
T ss_dssp CHHHHHHHHHHH--CSCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEEET----TT--------EEEEEEE
T ss_pred HHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEEEECC----CC--------CCEEEEE
T ss_conf 899999988754--48979889899999999999999879------9799962064347----77--------8605789
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHH---CCCCCCCCEEEEEECCCCCCC
Q ss_conf 99998278878579887999830466569----99988981079999999999985---269999708999946997898
Q 002613 165 IVLRIQPKYASEAAENAILVSSHIDTVFA----AEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEEEGL 237 (900)
Q Consensus 165 Viv~i~g~~~~~~~~~~ILl~aH~DSv~~----spGA~DdgsGVA~lLE~aR~L~~---~~~~p~~~Iiflf~~aEE~gL 237 (900)
||++++|+ .++.|+|+|||||++. .|||+|||||||+|||+||.|++ .+.+|+++|+|+||+|||.|+
T Consensus 96 ii~~~~~~-----~~~~i~l~aHyDs~~~~~~~~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl 170 (330)
T 4fai_A 96 IIATLNPN-----AERYLVLSCHYDSKYMPGVEFLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFE 170 (330)
T ss_dssp EEEESCTT-----CSEEEEEEEECCCCCCTTSCCCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSS
T ss_pred EEEEECCC-----CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf 99997899-----9827999976514666667879977764749999999999997542147887617999846620364
Q ss_pred --------CCHHHHHHC------------------CC-CC----------HHHHHHHHH----H------CCCCC---CC
Q ss_conf --------540899870------------------09-97----------047999887----3------28997---30
Q 002613 238 --------NGAHSFVTQ------------------AG-PH----------PWAVENFAA----A------AKYPS---GQ 267 (900)
Q Consensus 238 --------~GS~~fi~~------------------~G-p~----------~~li~~y~~----~------a~~P~---~~ 267 (900)
+||++|+++ .| ++ .+....... . ..++. ..
T Consensus 171 ~~~~~~~llGS~~~a~~~~~~~~~~~i~~~inlDmiG~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
T 4fai_A 171 EWGPKDSIYGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQSVETRLAKLQLLERYASSGVAQ 250 (330)
T ss_dssp SCBTTBSCHHHHHHHHHHHHTTCSTTEEEEEEECSCSSSSCCEEECCGGGHHHHHHHHHHHHHHHHTTC-----------
T ss_pred CCCCCCHHHHHHHHHHCCHHCCCHHCEEEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 55543011004888751100051111348987425765888730541576138788889987766522455532013333
Q ss_pred HHHHHHHHCC---CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 2346532169---9999984478742299808997542899989998899489998799999999999999997
Q 002613 268 VTAQDLFASG---AITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 338 (900)
Q Consensus 268 ~l~~~~f~~g---~ips~TD~~~F~~~~gipgld~a~~~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la 338 (900)
......|+.. -....+||.+|.+ .|||++++.....+.+|||+.||+|+||+++++++++.+.+++.+.-
T Consensus 251 ~~~~~~~~~~~~~~~~~~SDH~pF~~-~GIP~l~~i~~~~~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~EyL 323 (330)
T 4fai_A 251 RDPTRYFQSQAMRSSFIEDDHIPFLR-RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYL 323 (330)
T ss_dssp ----CCEEEEEETTCCCCSTTHHHHT-TTCCEEEECCSSCCTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 46643455667778888886199998-79988999799897878897478265899999999999999999999
No 4
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=1.00 E-value=1 Score=266.02 Aligned_cols=224 Identities=20% Similarity=0.259 Sum_probs=177.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999988269999999889999999999999511014784018999662357863233454456201114
Q 002613 81 KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 81 ~~~fs~erA~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
..+|+++|++++|++|+++++|+.||+++.++++||.++++++| .++++|.+.... . ...+.
T Consensus 19 ~~~~~~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G------~~v~~~~~~~~~---------~---~g~~~ 80 (309)
T 3tc8_A 19 VPDFNADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFG------AKVYQQEAILTA---------Y---DGTKL 80 (309)
T ss_dssp SCCCCHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEEC---------T---TSCEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEECCC---------C---CCCCC
T ss_conf 46569999999999997169988989899999999999999879------958999740456---------6---78756
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 5246999982788785798879998304665699-------------998898107999999999998526999970899
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (900)
Q Consensus 161 ~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~s-------------pGA~DdgsGVA~lLE~aR~L~~~~~~p~~~Iif 227 (900)
+..|||++++|+ +++.|+++||||||+.+ +||.||++|||++||++|.|.+. +++++|+|
T Consensus 81 ~~~Nvia~~~g~-----~~~~ill~aH~Dsv~~~~~~p~~~~~~~~~~Ga~D~~sGva~~Le~ar~l~~~--~~~~~i~f 153 (309)
T 3tc8_A 81 EARNIIGSFDPE-----NSKRVLLFAHWDSRPYSDHDPDPSKHRTPLDGADDGGSGVGALLEIARQIGQK--APGIGIDI 153 (309)
T ss_dssp EEEEEEEEESTT-----CSSEEEEEEECCCCSCCTTCSSGGGTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEEE
T ss_pred CCEEEEEEECCC-----CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCCEEE
T ss_conf 522899997899-----98569999505677777888543578830268555647699999999999847--99984899
Q ss_pred EEECCCCCCC-------------CCHHHHHHC----------------CCC-CH-------------HHHHHHHHHCCCC
Q ss_conf 9946997898-------------540899870----------------099-70-------------4799988732899
Q 002613 228 LFNTGEEEGL-------------NGAHSFVTQ----------------AGP-HP-------------WAVENFAAAAKYP 264 (900)
Q Consensus 228 lf~~aEE~gL-------------~GS~~fi~~----------------~Gp-~~-------------~li~~y~~~a~~P 264 (900)
+|+++||.|+ +||++|+++ .|. ++ .+++.+.+.++
T Consensus 154 ~~~~~EE~Gl~~~~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlD~~G~~~~~~~~~~~~~~~~~~l~~~~~~~a~-- 231 (309)
T 3tc8_A 154 IFFDAEDYGTPEFVTDYTPDSWCLGTQFWAKNPHVPNYTAEYGILLDMVGGKNATFFKEQQSLRAAAPIVEMVWSAAR-- 231 (309)
T ss_dssp EEECSCSCSCCTTCCSCCTTCSCHHHHHHHHSCSSTTCCCSEEEEEESCCBTTCCEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH--
T ss_conf 998841026545444545554132189998577766334378997603678998235215661038999999999998--
Q ss_pred CCCHHH-HHHHHC---CCCCCCCCHHHHHHCCCCCEEEEEEC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 730234-653216---99999984478742299808997542------89998999889948999879999999999999
Q 002613 265 SGQVTA-QDLFAS---GAITSATDFQVYKEVAGLSGLDFAYT------DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFL 334 (900)
Q Consensus 265 ~~~~l~-~~~f~~---g~ips~TD~~~F~~~~gipgld~a~~------~~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv 334 (900)
.+. ...|+. |. ..+||.+|.++.|||++++... ...++|||+.||+++|+++++++.++++++++
T Consensus 232 ---~~g~~~~f~~~~~g~--~~sDh~~f~~~~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~v 306 (309)
T 3tc8_A 232 ---DLGYGKYFINAAGGA--ITDDHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVI 306 (309)
T ss_dssp ---HHTCTTTEEEEECCC--CCCHHHHHHHHHCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHH
T ss_pred ---HCCCCCEECCCCCCC--CCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf ---759962004677898--889548788649998899861367666788988989757723489999999999999998
Q ss_pred HH
Q ss_conf 99
Q 002613 335 LQ 336 (900)
Q Consensus 335 ~~ 336 (900)
++
T Consensus 307 y~ 308 (309)
T 3tc8_A 307 YN 308 (309)
T ss_dssp HH
T ss_pred HC
T ss_conf 40
No 5
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=1.00 E-value=1 Score=257.73 Aligned_cols=226 Identities=18% Similarity=0.281 Sum_probs=176.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999988269999999889999999999999511014784018999662357863233454456201114
Q 002613 81 KRGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (900)
Q Consensus 81 ~~~fs~erA~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~~~y~ 160 (900)
..+|+++|++++|++|+++++|..||+++.++++||.++++++| .++++|.+.... + ...+.
T Consensus 21 ~~~~~~~~~~~~l~~L~~~~~R~~gs~~~~~~~~~l~~~l~~~G------~~v~~~~~~~~~---------~---~g~~~ 82 (314)
T 3gux_A 21 APEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFG------AKVYNQYADLIA---------Y---DGTIL 82 (314)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTT------CEEEEEEEEEEC---------T---TSCEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEEECCC---------C---CCCCC
T ss_conf 78779999999999997669958979899999999999999879------979999763455---------6---78856
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 5246999982788785798879998304665699-------------998898107999999999998526999970899
Q 002613 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (900)
Q Consensus 161 ~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~s-------------pGA~DdgsGVA~lLE~aR~L~~~~~~p~~~Iif 227 (900)
+..|||++++|+ +++.|+++||||||+.+ +||.||++|||++||++|.|.+. +++++|+|
T Consensus 83 ~~~Nvia~~~g~-----~~~~ill~aH~Dsv~~~~~~p~~~~~~~~~~GA~D~~sGva~~Le~ar~l~~~--~~~~~i~f 155 (314)
T 3gux_A 83 KSRNIIGAYKPE-----SKKRILLCAHWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKE--QPALGIDI 155 (314)
T ss_dssp EEEEEEEEESTT-----CSSEEEEEEECCCCC--------------------CHHHHHHHHHHHHHHHHS--CCSSEEEE
T ss_pred CCEEEEEEECCC-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CCCCCEEE
T ss_conf 402899998899-----98659997666678767778544467754378756588999999999999847--99986899
Q ss_pred EEECCCCCCC--------------CCHHHHHHC----------------CC-CC-------------HHHHHHHHHHCCC
Q ss_conf 9946997898--------------540899870----------------09-97-------------0479998873289
Q 002613 228 LFNTGEEEGL--------------NGAHSFVTQ----------------AG-PH-------------PWAVENFAAAAKY 263 (900)
Q Consensus 228 lf~~aEE~gL--------------~GS~~fi~~----------------~G-p~-------------~~li~~y~~~a~~ 263 (900)
+++++||.|+ +||++|+++ .| ++ +++++.+.+.++
T Consensus 156 v~~~~EE~Gl~~~~~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlDm~G~~~~~~~~~g~~~~~~~~l~~~~~~~~~- 234 (314)
T 3gux_A 156 VFFDSEDYGIPEFYDGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKKAH- 234 (314)
T ss_dssp EEECSCCC-----------CTTSCHHHHHHHHSCSSTTCCCSEEEEEESCCBTTCCEEECTTHHHHCHHHHHHHHHHHH-
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-
T ss_conf 9988744465344445545543021089998577654224158998732678987446523664327999999999998-
Q ss_pred CCCCHHH-HHHHHCC-CCCCCCCHHHHHHCCCCCEEEEEECCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9730234-6532169-999998447874229980899754289-------998999889948999879999999999999
Q 002613 264 PSGQVTA-QDLFASG-AITSATDFQVYKEVAGLSGLDFAYTDK-------SAVYHTKNDKLDLLKPGSLQHLGENMLAFL 334 (900)
Q Consensus 264 P~~~~l~-~~~f~~g-~ips~TD~~~F~~~~gipgld~a~~~~-------~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv 334 (900)
.+. ...|... --...+||.+|.+..|||++++....+ +++|||+.||+++|+++++++.+++++.++
T Consensus 235 ----~~g~~~~f~~~~~~~~~sDh~pF~~~~GiP~l~~i~~~~~~~~~~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~ 310 (314)
T 3gux_A 235 ----ELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVI 310 (314)
T ss_dssp ----HHTCTTTEEEEECCCCCCHHHHHHHHSCCCEEEEEBCC--------------------CBCHHHHHHHHHHHHHHH
T ss_pred ----HCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHH
T ss_conf ----7398422456669988996678884599856987513665455678999989767501289999999999999999
Q ss_pred HH
Q ss_conf 99
Q 002613 335 LQ 336 (900)
Q Consensus 335 ~~ 336 (900)
++
T Consensus 311 y~ 312 (314)
T 3gux_A 311 YN 312 (314)
T ss_dssp HT
T ss_pred HH
T ss_conf 62
No 6
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=1.00 E-value=1 Score=253.22 Aligned_cols=242 Identities=22% Similarity=0.290 Sum_probs=179.6
Q ss_pred CCCCC--CCCCCCCC--CCCCCHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
Q ss_conf 35999--98745359--99999999999-999988269999999889999999999999511014784018999662357
Q 002613 68 EHMPP--PLTADQAG--KRGFSEFEAIK-HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKS 142 (900)
Q Consensus 68 ~~lP~--~~~~~~~~--~~~fs~erA~~-~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~ 142 (900)
.+.|. +++.++.. +.+|+.+|+++ +|+.+ +++|.+||+++.++++||.+++++++. +.++++|.|....
T Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~--~~~R~~gS~~~~~a~~~l~~~l~~~~~----g~~v~~d~f~~~~ 89 (330)
T 3pb6_X 16 LRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPL--LVVRTPGSPGNLQVRKFLEATLRSLTA----GWHVELDPFTAST 89 (330)
T ss_dssp --CCCTTCCCHHHHHHHHHTCCHHHHHHHTTGGG--CSCCCTTSHHHHHHHHHHHHHHHHSTT----CCEEEEEEEEEEE
T ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHCC----CCEEEEEEEECCC
T ss_conf 2677768889999986211479999999999998--388899998999999999999997589----9759998632145
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 863233454456201114524699998278878579887999830466569------99988981079999999999985
Q 002613 143 GANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA------AEGAGDCSSCVAVMLELARAMSQ 216 (900)
Q Consensus 143 g~~~~~gg~~~~~~~~y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~------spGA~DdgsGVA~lLE~aR~L~~ 216 (900)
. . .+.+..|||++++|+ .++.|+++|||||++. .|||+||++|||++||++|.|.+
T Consensus 90 ~----~---------g~~~~~Nvia~~~g~-----~~~~ivl~aH~Dsv~~~~g~~~~~GA~D~asGva~lLe~ar~l~~ 151 (330)
T 3pb6_X 90 P----L---------GPVDFGNVVATLDPR-----AARHLTLACHYDSKLFPPGSTPFVGATDSAVPCALLLELAQALDL 151 (330)
T ss_dssp T----T---------EEEEEEEEEEESCTT-----SSEEEEEEEECCCCCCCTTSCCCCCTTTTHHHHHHHHHHHHHTHH
T ss_pred C----C---------CCCCCEEEEEEECCC-----CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5----6---------886514899997899-----985599981467777789886748986773899999999999999
Q ss_pred C-----CCCCCCCEEEEEECCCCC--------CCCCHHHHHHC--C----------------------C-CCH-------
Q ss_conf 2-----699997089999469978--------98540899870--0----------------------9-970-------
Q 002613 217 W-----AHGFKNAVIFLFNTGEEE--------GLNGAHSFVTQ--A----------------------G-PHP------- 251 (900)
Q Consensus 217 ~-----~~~p~~~Iiflf~~aEE~--------gL~GS~~fi~~--~----------------------G-p~~------- 251 (900)
. +.+|+++|+|+|+++||. ||+||++|+++ . | +++
T Consensus 152 ~~~~~~~~~~~~~i~fv~~~~EE~f~~w~~~~gl~GS~~~a~~~~~~~~~~~~~~~~~i~~~inlDmiG~~~~~~~~~~~ 231 (330)
T 3pb6_X 152 ELSRAKKQAAPVTLQLLFLDGEEALKEWGPKDSLYGSRHLAQLMESIPHSPGPTRIQAIELFMLLDLLGAPNPTFYSHFP 231 (330)
T ss_dssp HHHHHHHTTCSEEEEEEEESCCSCSSCCSTTSSCHHHHHHHHHHHHSBCSSCSBTTTTEEEEEEEESCSSSSCCBCCCCG
T ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCEEEEEECCCCCCCCCCCEEECC
T ss_conf 77640267888717999976764655567888871599999988746775444521285799956578889998125457
Q ss_pred ---HHHHHHHH---H---C----CCCCCCHHHHHHHHCC--CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf ---47999887---3---2----8997302346532169--999998447874229980899754289998999889948
Q 002613 252 ---WAVENFAA---A---A----KYPSGQVTAQDLFASG--AITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLD 316 (900)
Q Consensus 252 ---~li~~y~~---~---a----~~P~~~~l~~~~f~~g--~ips~TD~~~F~~~~gipgld~a~~~~~~~YHT~~Dt~~ 316 (900)
++.+...+ . . .+|.. ...|... .-...+||.+|.+ .|||++++......++|||+.||++
T Consensus 232 ~t~~~~~~l~~i~~~~~~~g~~~~~p~~----~~~f~~~~~~~~~~SDH~pF~~-~GIP~~~~~~~~f~~~yHt~~Dt~d 306 (330)
T 3pb6_X 232 RTVRWFHRLRSIEKRLHRLNLLQSHPQE----VMYFQPGEPFGSVEDDHIPFLR-RGVPVLHLISTPFPAVWHTPADTEV 306 (330)
T ss_dssp GGHHHHHHHHHHHHHHHHTTCCSSCCSS----CSSBCSSCSSCCCSCTTHHHHT-TTCCEEEEECSSCCTTTTSTTCSGG
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 6257899999999999971864357753----2234553337888992476987-7998899974799898899857523
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998799999999999999997
Q 002613 317 LLKPGSLQHLGENMLAFLLQAA 338 (900)
Q Consensus 317 ~i~~~slq~~g~~~l~lv~~la 338 (900)
+||++++++.++.+..++.+.-
T Consensus 307 ~id~~~l~~~~~i~~~fv~Eyl 328 (330)
T 3pb6_X 307 NLHPPTVHNLCRILAVFLAEYL 328 (330)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4899999999999999999984
No 7
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=1.00 E-value=1 Score=248.48 Aligned_cols=243 Identities=23% Similarity=0.320 Sum_probs=181.4
Q ss_pred CCCCCCCCCCCCCC--CCCCCHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--HCCCCCCCCEEEEEEEECC
Q ss_conf 23599998745359--999999999-999999882699999998899999999999995--1101478401899966235
Q 002613 67 YEHMPPPLTADQAG--KRGFSEFEA-IKHVKALTELGPHPVGSDALDRALQYVFAAAQK--IKETKHWEVDVEVDFFHAK 141 (900)
Q Consensus 67 ~~~lP~~~~~~~~~--~~~fs~erA-~~~L~~Lt~igpr~~GS~~~~~a~~yL~~~l~~--ig~~~~~~~~v~vd~~~~~ 141 (900)
.+++|.+++.++.+ +.+++.+|+ .++|+.| +++|.++|.+++++++||.+++++ .| .++++|.+...
T Consensus 9 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~L--~~~r~~~s~~~~~~~~~l~~~l~~~~~G------~~v~~~~~~~~ 80 (329)
T 2afw_A 9 NYHQPAILNSSALRQIAEGTSISEMWQNDLQPL--LIERYPGSPGSYAARQHIMQRIQRLQAD------WVLEIDTFLSQ 80 (329)
T ss_dssp HHCCCCCCCHHHHHHHHHHCCHHHHHHHTTGGG--CSCCCTTSHHHHHHHHHHHHHHHTSSSC------CEEEEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHCCC------CEEEEEEEEEC
T ss_conf 036888799699997653238999999999997--2998998979999999999999862789------77999888723
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHH
Q ss_conf 78632334544562011145246999982788785798879998304665699-------99889810799999999999
Q 002613 142 SGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAA-------EGAGDCSSCVAVMLELARAM 214 (900)
Q Consensus 142 ~g~~~~~gg~~~~~~~~y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~s-------pGA~DdgsGVA~lLE~aR~L 214 (900)
.. .| +.+..||+++++|+ +++.|+++||||||+.+ +||.||++|||++||++|.|
T Consensus 81 ~~----~g---------~~~~~Nvi~~~~g~-----~~~~i~l~aH~Dsv~~~~~~~~~~~Ga~D~~sGva~~le~ar~l 142 (329)
T 2afw_A 81 TP----YG---------YRSFSNIISTLNPT-----AKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARAL 142 (329)
T ss_dssp CT----TS---------SEEEEEEEEESSTT-----SSEEEEEEEECCCCCCCCBTTBCCCCTTTTHHHHHHHHHHHHHT
T ss_pred CC----CC---------CCEEEEEEEEECCC-----CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78----88---------72676999997799-----98389999843677767666767779665315599999999999
Q ss_pred HHC--------CCCCCCCEEEEEECCCCC--------CCCCHHHHHHCC---------------------------CC-C
Q ss_conf 852--------699997089999469978--------985408998700---------------------------99-7
Q 002613 215 SQW--------AHGFKNAVIFLFNTGEEE--------GLNGAHSFVTQA---------------------------GP-H 250 (900)
Q Consensus 215 ~~~--------~~~p~~~Iiflf~~aEE~--------gL~GS~~fi~~~---------------------------Gp-~ 250 (900)
.+. +.+|+++|+|+|+++||. |+.||+.|+++- |. +
T Consensus 143 ~~~~~~~~~~~g~~~~~~i~~~~~~~EE~~~~~~~~~gl~Gs~~~~~~~~~~~~p~~~~~~~~~~~i~~~inlD~iG~~~ 222 (329)
T 2afw_A 143 DKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPN 222 (329)
T ss_dssp HHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHHHHHHHTSBSSTTCSSCBTTTTEEEEEEECSCCSSS
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 99875520133578886179999667433455677765530899999987477865333445300457899733479999
Q ss_pred HHHHHHHHHHCCCCCC---CHHHHHHHHCCCC-----------------CCCCCHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 0479998873289973---0234653216999-----------------9998447874229980899754289998999
Q 002613 251 PWAVENFAAAAKYPSG---QVTAQDLFASGAI-----------------TSATDFQVYKEVAGLSGLDFAYTDKSAVYHT 310 (900)
Q Consensus 251 ~~li~~y~~~a~~P~~---~~l~~~~f~~g~i-----------------ps~TD~~~F~~~~gipgld~a~~~~~~~YHT 310 (900)
+..+..|... .+.. ..+.+.+.+.|.+ ...+||.+|.+ .|||++++......++|||
T Consensus 223 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~~~~~~~~~~~f~~~~~~g~~~sDh~~F~~-~GiP~~~~~~~~~~~~yHt 299 (329)
T 2afw_A 223 PTFPNFFPNS--ARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLR-RGVPVLHLIPSPFPEVWHT 299 (329)
T ss_dssp CCBCCCCGGG--HHHHHHHHHHHHHHHHTTCSSSCCSTTCSBCSCCCCSCCCSTTHHHHT-TTCCEEEECCSSCCTTTTS
T ss_pred CCEEEECCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCCCEEEEECCCCCCCCCC
T ss_conf 7644551675--358899999999999728866787421012344569998898774897-7998899976888877889
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899489998799999999999999997
Q 002613 311 KNDKLDLLKPGSLQHLGENMLAFLLQAA 338 (900)
Q Consensus 311 ~~Dt~~~i~~~slq~~g~~~l~lv~~la 338 (900)
++||++++++++++++++.+..++.+.-
T Consensus 300 ~~Dt~~~ld~~~l~~~~~~~~~~v~eyl 327 (329)
T 2afw_A 300 MDDNEENLDESTIDNLNKILQVFVLEYL 327 (329)
T ss_dssp TTCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8776244899999999999999999985
No 8
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=1.00 E-value=1 Score=244.19 Aligned_cols=184 Identities=18% Similarity=0.205 Sum_probs=152.8
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC----CCCCCCCEEEEEECCCC
Q ss_conf 14524699998278878579887999830466569999889810799999999999852----69999708999946997
Q 002613 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLFNTGEE 234 (900)
Q Consensus 159 y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~spGA~DdgsGVA~lLE~aR~L~~~----~~~p~~~Iiflf~~aEE 234 (900)
.....||+++++|+ +.++++|+++||+||| ++||.||++|+|++||++|.|.+. +++|+|+|+|++|++||
T Consensus 263 ~~~~~NVi~~i~G~---~~~~~~vvvgaH~Ds~--~~Ga~D~~sG~a~lLe~ar~l~~~~~~~g~~p~r~I~f~~~~~EE 337 (640)
T 3kas_A 263 EIKILNIFGVIKGF---VEPDHYVVVGAQRDAW--GPGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGD 337 (640)
T ss_dssp EEEEEEEEEEECCS---SEEEEEEEEEEECCCS--SCCTTTTHHHHHHHHHHHHHHHHHHHTSCCCCSEEEEEEEESSGG
T ss_pred EEEEEEEEEEEECC---CCCCCCEEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 65678999999287---6777823640615889--999886729999999999999974654379988857999989835
Q ss_pred CCCCCHHHHHHC-------------------CCC-------CH---HHHHHHHHHCCCCCCC-HHHHH-HHH--CCCCCC
Q ss_conf 898540899870-------------------099-------70---4799988732899730-23465-321--699999
Q 002613 235 EGLNGAHSFVTQ-------------------AGP-------HP---WAVENFAAAAKYPSGQ-VTAQD-LFA--SGAITS 281 (900)
Q Consensus 235 ~gL~GS~~fi~~-------------------~Gp-------~~---~li~~y~~~a~~P~~~-~l~~~-~f~--~g~ips 281 (900)
.|+.||++|+++ .|+ +| ++++.+.+.+++|.+. ++.++ .|. .+.+++
T Consensus 338 ~gl~GS~~~~~~~~~~l~~~~~a~iNlD~~~~G~~~l~~~~~p~l~~l~~~~~~~v~~P~~~~tl~~~~~w~~~~~~~~~ 417 (640)
T 3kas_A 338 FGSVGATEWLEGYLSSLHLKAFTYINLDKAVLGTSNFKVSASPLLYTLIEKTMQNVKHPVTGQFLYQDSNWASKVEKLTL 417 (640)
T ss_dssp GTSHHHHHHHHHTTTTGGGTEEEEEECTTCBSCSSEEEEEECGGGHHHHHHHHTTCBCTTTCSBSCCCTTGGGGCCCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 57455999998601545648899996156766887058874888999999999757999888721013430003478999
Q ss_pred CCCHHHHHHCCCCCEEEEEECCC-CC-CCCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98447874229980899754289-99-89998899489998------799999999999999997299999998
Q 002613 282 ATDFQVYKEVAGLSGLDFAYTDK-SA-VYHTKNDKLDLLKP------GSLQHLGENMLAFLLQAASSTSLPKGN 347 (900)
Q Consensus 282 ~TD~~~F~~~~gipgld~a~~~~-~~-~YHT~~Dt~~~i~~------~slq~~g~~~l~lv~~la~s~~l~~~~ 347 (900)
+|||.+|.++.|||++|++|..+ .| +|||.+||+++++. ..++.+++.+..++.+|++++.+|.+.
T Consensus 418 ~sD~~~F~~~~GIP~~~~~~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~~lP~~~ 491 (640)
T 3kas_A 418 DNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNLDY 491 (640)
T ss_dssp TSTHHHHHHHHCCCEEEEEEECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSSSCCCCT
T ss_pred CCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 86228889737987563256579888886884143788875338378999999999999999971587779988
No 9
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=1.00 E-value=1 Score=237.14 Aligned_cols=184 Identities=22% Similarity=0.309 Sum_probs=150.9
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCCCCCEEEEEECCCC
Q ss_conf 11452469999827887857988799983046656999988981079999999999985---269999708999946997
Q 002613 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEE 234 (900)
Q Consensus 158 ~y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~spGA~DdgsGVA~lLE~aR~L~~---~~~~p~~~Iiflf~~aEE 234 (900)
....+.||+++++|+ +.++++|+++||+|||. +||.||++|||++||++|.|.+ .+++|+|+|+|++|++||
T Consensus 308 ~~~~~~NVi~~i~G~---~~~~~~vllgaH~Ds~~--~Ga~D~~sG~a~lLe~ar~l~~~~~~g~~p~r~I~f~~~~~EE 382 (707)
T 3fed_A 308 KITRIYNVVGTIRGS---VEPDRYVILGGHRDSWV--FGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEE 382 (707)
T ss_dssp EEEEEEEEEEEECCS---SEEEEEEEEEEECCCSS--SCTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGG
T ss_pred EEEEEEEEEEEEECC---CCCCCEEEEECCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 787778999998388---77786699956646788--8886672899999999999876443058888887999868845
Q ss_pred CCCCCHHHHHHC-------------------CCC-------CH---HHHHHHHHHCCCCCC----CHHHHHHHH------
Q ss_conf 898540899870-------------------099-------70---479998873289973----023465321------
Q 002613 235 EGLNGAHSFVTQ-------------------AGP-------HP---WAVENFAAAAKYPSG----QVTAQDLFA------ 275 (900)
Q Consensus 235 ~gL~GS~~fi~~-------------------~Gp-------~~---~li~~y~~~a~~P~~----~~l~~~~f~------ 275 (900)
.|+.||+.|+++ .|+ +| +++..+.+.+++|.+ .++.+..++
T Consensus 383 ~Gl~GS~~~~~~~~~~~~~~~~a~iNlD~~~~g~~~~~~~~sp~l~~~i~~~~~~v~~P~~~~~~~tly~~w~~~~~~~~ 462 (707)
T 3fed_A 383 FGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPE 462 (707)
T ss_dssp GTSHHHHHHHHHHHHHHHHHEEEEEECSCSBSCSSEEEEEECGGGHHHHHHHHTTSBCCSTTCTTSBHHHHHHHHSEETT
T ss_pred CCCHHHHHHHHHCCHHHHHCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 66446999998542323547799998434556885189960888999999987328998655554669999986254435
Q ss_pred ------CCCCCCCCCHHHHHHCCCCCEEEEEECCC-------CC-CCCCCCCCCCCCCH------HHHHHHHHHHHHHHH
Q ss_conf ------69999998447874229980899754289-------99-89998899489998------799999999999999
Q 002613 276 ------SGAITSATDFQVYKEVAGLSGLDFAYTDK-------SA-VYHTKNDKLDLLKP------GSLQHLGENMLAFLL 335 (900)
Q Consensus 276 ------~g~ips~TD~~~F~~~~gipgld~a~~~~-------~~-~YHT~~Dt~~~i~~------~slq~~g~~~l~lv~ 335 (900)
.+.+.++|||.+|.++.|||++|++|..+ .| +|||.+||+++++. ..++.+++.+..++.
T Consensus 463 ~~~~p~i~~lgsgSD~~~F~~~~GIPs~~~~f~~~~~~~~~~~y~~YHT~~Dt~~~~~~~~Dp~f~~h~~~a~~~g~l~l 542 (707)
T 3fed_A 463 NKNLPRINKLGSGSDFEAYFQRLGIASGRARYTKNKKTDKYSSYPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVY 542 (707)
T ss_dssp EEEEECEECCCSSSTTHHHHHTTCCCEEEEEEECCTTTCCSSSCTTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 56775324688998739999728901221422468666666787776777556889987338548999999999999999
Q ss_pred HHHCCCCCCCC
Q ss_conf 99729999999
Q 002613 336 QAASSTSLPKG 346 (900)
Q Consensus 336 ~la~s~~l~~~ 346 (900)
+||+++.+|.+
T Consensus 543 ~La~~~vlP~~ 553 (707)
T 3fed_A 543 ELVDSKIIPFN 553 (707)
T ss_dssp HHHHCSSCCCC
T ss_pred HHHCCCCCCCC
T ss_conf 98178667878
No 10
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=1.00 E-value=1 Score=229.07 Aligned_cols=227 Identities=19% Similarity=0.249 Sum_probs=178.7
Q ss_pred CCCCHHHHHHHHHHHHHC-----CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999999999999998826-----999999988999999999999951101478401899966235786323345445620
Q 002613 82 RGFSEFEAIKHVKALTEL-----GPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (900)
Q Consensus 82 ~~fs~erA~~~L~~Lt~i-----gpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v~vd~~~~~~g~~~~~gg~~~~~~ 156 (900)
.+++.+++.++|++|.++ ++|..+++++.++++||.++++++| .+++++.+... +
T Consensus 2 ~~i~~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g------~~v~~~~~~~~-------~------- 61 (284)
T 1tkj_A 2 PDIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAG------YTTTLQQFTSG-------G------- 61 (284)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHT------CEEEEEEEEET-------T-------
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEEECCC-------C-------
T ss_conf 968999999999999702346898877898779999999999999769------85899975148-------8-------
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 11145246999982788785798879998304665699998898107999999999998526999970899994699789
Q 002613 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (900)
Q Consensus 157 ~~y~~~~NViv~i~g~~~~~~~~~~ILl~aH~DSv~~spGA~DdgsGVA~lLE~aR~L~~~~~~p~~~Iiflf~~aEE~g 236 (900)
.+..||+++++|+ .+++.|+++||+|+|+.++||.||++|+|++||++|.|.+.+.+++++|+|+|+++||.|
T Consensus 62 ---~~~~nvi~~~~g~----~~~~~i~l~aH~D~v~~g~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g 134 (284)
T 1tkj_A 62 ---ATGYNLIANWPGG----DPNKVLMAGAHLDSVSSGAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELG 134 (284)
T ss_dssp ---EEEEEEEEECSCS----EEEEEEEEEEECCCCTTSCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGT
T ss_pred ---CCCEEEEEEEECC----CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC
T ss_conf ---8740499997178----999779999645778999997567499999999999999669999843999998871147
Q ss_pred CCCHHHHHHC-----------------CCC----------CHHHHHHHHHH---CCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 8540899870-----------------099----------70479998873---28997302346532169999998447
Q 002613 237 LNGAHSFVTQ-----------------AGP----------HPWAVENFAAA---AKYPSGQVTAQDLFASGAITSATDFQ 286 (900)
Q Consensus 237 L~GS~~fi~~-----------------~Gp----------~~~li~~y~~~---a~~P~~~~l~~~~f~~g~ips~TD~~ 286 (900)
+.||+.|+++ .|. ++.+.+.+.+. ...|.. ....-..+||+.
T Consensus 135 ~~Gs~~~~~~~~~~~~~~~~~~i~~D~~g~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~--------~~~~~~~~sD~~ 206 (284)
T 1tkj_A 135 LIGSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDDPVIEKTFKNYFAGLNVPTE--------IETEGDGRSDHA 206 (284)
T ss_dssp SHHHHHHHHHSCHHHHTTEEEEEEECCCCCSSCCCEECCSSHHHHHHHHHHHHHHTCCCE--------ECCSSTTCSTHH
T ss_pred CCCHHHHHHHCCCCHHHCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCC--------CCCCCCCCCCHH
T ss_conf 758899986376100334899999557877888738966877899999999987699850--------278899999339
Q ss_pred HHHHCCCCCEEEEEECC-------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87422998089975428-------------------99989998899489998799999999999999997299999
Q 002613 287 VYKEVAGLSGLDFAYTD-------------------KSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLP 344 (900)
Q Consensus 287 ~F~~~~gipgld~a~~~-------------------~~~~YHT~~Dt~~~i~~~slq~~g~~~l~lv~~la~s~~l~ 344 (900)
+|.+ .|||++.+.... ...+|||+.|++++++++.++++++.+..+++.+++++.+|
T Consensus 207 ~f~~-~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~~~la~~~~~P 282 (284)
T 1tkj_A 207 PFKN-VGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAIWTLSSGTGEP 282 (284)
T ss_dssp HHHH-TTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHH-CCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8997-899889845476433431000001345566789999998677101899999999999999999996489899
Done!