BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002614
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 23/333 (6%)
Query: 243 ALDVHNIA---CGARHAVLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNV 298
ALD H I CGA H V ++ G E++SWG GRLGHG +D+ P I+ L G+ +
Sbjct: 64 ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 123
Query: 299 ELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC 358
+ +ACG+ H AVT G++ +WG +G LG G +P+K+ +GI + ++
Sbjct: 124 KQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAA 180
Query: 359 GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXX 418
G HTA VT G L+ +G G +G LG GD +P V + G + + V+CG H
Sbjct: 181 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 240
Query: 419 XXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGH 478
G L+T+G G+LGHGD E L P + L + I Q++ G
Sbjct: 241 SY--------------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW 286
Query: 479 DLSVALTTSGHVYTMGSAAYGQLGVPV-ADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
++ALT+ G +Y G +GQ+GV D P +V + V+ V+CG H A+T
Sbjct: 287 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVT 345
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFL 570
+ V+ WG+G NGQLG G+ +RN P +++ L
Sbjct: 346 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 378
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 175/342 (51%), Gaps = 20/342 (5%)
Query: 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHT 308
I+ GA H+V + + SWG G+LGHG D P + L G + V CG HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 309 CAVTRSG-DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT 367
A ++SG ++Y+WG G + G LGHG+ + P + L GI + I+CG H VT
Sbjct: 81 VAYSQSGMEVYSWGWGDF--GRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVT 137
Query: 368 SAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXX 427
G + ++G G LG GD + +P++++ G+R V+ G H
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED------ 191
Query: 428 XXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTS 487
G L+ WG G G LG GD+ RL PE V E + VACG +++++ S
Sbjct: 192 --------GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 243
Query: 488 GHVYTMGSAAYGQLG-VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWG 546
G +YT G + YGQLG + D L+P +++ ++ SF+ +++ G H ALTS K+Y WG
Sbjct: 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWG 302
Query: 547 KGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
GQ+G G+ ++ SP V F D++V +V CG T +
Sbjct: 303 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 344
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 27/302 (8%)
Query: 202 DVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261
+V+ WG G R+G+ S +D P +++ + + IACG H + VT
Sbjct: 89 EVYSWGWGDFG--------RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 262 QGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321
+GE+ SWG G+LG G D PQ I+ G+ +++VA G HT AVT GDLY WG
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 198
Query: 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
G Y G LG G + +P +V+ + G +S ++CG HT V+ +G L+T+G +G
Sbjct: 199 WGRY--GNLGLGDRTDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTW 441
LGHGD IP ++E L +++S G H GKL+ W
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD--------------GKLYGW 301
Query: 442 GDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQL 501
G G++G G+ + P V D+ + QV+CG ++A+T +V+ G GQL
Sbjct: 302 GWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361
Query: 502 GV 503
G+
Sbjct: 362 GI 363
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS 294
V ++CG RH + VT++ +F+WG + G+LG G D + P++IE LS
Sbjct: 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 23/333 (6%)
Query: 243 ALDVHNIA---CGARHAVLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNV 298
ALD H I CGA H V ++ G E++SWG GRLGHG +D+ P I+ L G+ +
Sbjct: 52 ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 299 ELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC 358
+ +ACG+ H AVT G++ +WG +G LG G +P+K+ +GI + ++
Sbjct: 112 KQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAA 168
Query: 359 GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXX 418
G HTA VT G L+ +G G +G LG GD +P V + G + + V+CG H
Sbjct: 169 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 228
Query: 419 XXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGH 478
G L+T+G G+LGHGD E L P + L + I Q++ G
Sbjct: 229 SYS--------------GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGF 274
Query: 479 DLSVALTTSGHVYTMGSAAYGQLGVPV-ADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
++ALT+ G +Y G +GQ+GV D P +V + V+ V+CG H A+T
Sbjct: 275 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVT 333
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFL 570
+ V+ WG+G NGQLG G+ +RN P +++ L
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 175/342 (51%), Gaps = 20/342 (5%)
Query: 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHT 308
I+ GA H+V + + SWG G+LGHG D P + L G + V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 309 CAVTRSG-DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT 367
A ++SG ++Y+WG G + G LGHG+ + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWGDF--GRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVT 125
Query: 368 SAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXX 427
G + ++G G LG GD + +P++++ G+R V+ G H
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED------ 179
Query: 428 XXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTS 487
G L+ WG G G LG GD+ RL PE V E + VACG +++++ S
Sbjct: 180 --------GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 231
Query: 488 GHVYTMGSAAYGQLG-VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWG 546
G +YT G + YGQLG + D L+P +++ ++ SF+ +++ G H ALTS K+Y WG
Sbjct: 232 GALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGFRHTMALTSDGKLYGWG 290
Query: 547 KGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
GQ+G G+ ++ SP V F D++V +V CG T +
Sbjct: 291 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 27/302 (8%)
Query: 202 DVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261
+V+ WG G R+G+ S +D P +++ + + IACG H + VT
Sbjct: 77 EVYSWGWGDFG--------RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 262 QGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321
+GE+ SWG G+LG G D PQ I+ G+ +++VA G HT AVT GDLY WG
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 186
Query: 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
G Y G LG G + +P +V+ + G +S ++CG HT V+ +G L+T+G +G
Sbjct: 187 WGRY--GNLGLGDRTDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTW 441
LGHGD IP ++E L +++S G H GKL+ W
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSD--------------GKLYGW 289
Query: 442 GDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQL 501
G G++G G+ + P V D+ + QV+CG ++A+T +V+ G GQL
Sbjct: 290 GWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 349
Query: 502 GV 503
G+
Sbjct: 350 GI 351
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS 294
V ++CG RH + VT++ +F+WG + G+LG G D + P++IE LS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 23/333 (6%)
Query: 243 ALDVHNIA---CGARHAVLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNV 298
ALD H I CGA H V ++ G E++SWG GRLGHG +D+ P I+ L G+ +
Sbjct: 52 ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 111
Query: 299 ELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC 358
+ +ACG+ H AVT G++ +WG +G LG G +P+K+ +GI + ++
Sbjct: 112 KQIACGDSHCLAVTMEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAA 168
Query: 359 GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXX 418
G HTA VT G L+ +G G +G LG GD +P V + G + + V+CG H
Sbjct: 169 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 228
Query: 419 XXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGH 478
G L+T+G G+LGHGD E L P + L + I Q++ G
Sbjct: 229 SYS--------------GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW 274
Query: 479 DLSVALTTSGHVYTMGSAAYGQLGVPV-ADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
++ALT+ G +Y G +GQ+GV D P +V + V+ V+CG H A+T
Sbjct: 275 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVT 333
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFL 570
+ V+ WG+G NGQLG G+ +RN P +++ L
Sbjct: 334 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 175/342 (51%), Gaps = 20/342 (5%)
Query: 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHT 308
I+ GA H+V + + SWG G+LGHG D P + L G + V CG HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 309 CAVTRSG-DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT 367
A ++SG ++Y+WG G + G LGHG+ + P + L GI + I+CG H VT
Sbjct: 69 VAYSQSGMEVYSWGWGDF--GRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVT 125
Query: 368 SAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXX 427
G + ++G G LG GD + +P++++ G+R V+ G H
Sbjct: 126 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED------ 179
Query: 428 XXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTS 487
G L+ WG G G LG GD+ RL PE V E + VACG +++++ S
Sbjct: 180 --------GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYS 231
Query: 488 GHVYTMGSAAYGQLG-VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWG 546
G +YT G + YGQLG + D L+P +++ ++ SF+ +++ G H ALTS K+Y WG
Sbjct: 232 GALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGWRHTMALTSDGKLYGWG 290
Query: 547 KGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
GQ+G G+ ++ SP V F D++V +V CG T +
Sbjct: 291 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 332
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 27/302 (8%)
Query: 202 DVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261
+V+ WG G R+G+ S +D P +++ + + IACG H + VT
Sbjct: 77 EVYSWGWGDFG--------RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 262 QGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321
+GE+ SWG G+LG G D PQ I+ G+ +++VA G HT AVT GDLY WG
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG 186
Query: 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
G Y G LG G + +P +V+ + G +S ++CG HT V+ +G L+T+G +G
Sbjct: 187 WGRY--GNLGLGDRTDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTW 441
LGHGD IP ++E L +++S G H GKL+ W
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD--------------GKLYGW 289
Query: 442 GDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQL 501
G G++G G+ + P V D+ + QV+CG ++A+T +V+ G GQL
Sbjct: 290 GWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 349
Query: 502 GV 503
G+
Sbjct: 350 GI 351
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS 294
V ++CG RH + VT++ +F+WG + G+LG G D + P++IE LS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 175/342 (51%), Gaps = 20/342 (5%)
Query: 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHT 308
I+ GA H+V + + SWG G+LGHG D P + L G + V CG HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 309 CAVTRSG-DLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT 367
A ++SG ++Y+WG G + G LGHG+ + P + L GI + I+CG H VT
Sbjct: 71 VAYSQSGXEVYSWGWGDF--GRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVT 127
Query: 368 SAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXX 427
G + ++G G LG GD + +P++++ G+R V+ G H
Sbjct: 128 XEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTED------ 181
Query: 428 XXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTS 487
G L+ WG G G LG GD+ RL PE V E VACG +++++ S
Sbjct: 182 --------GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYS 233
Query: 488 GHVYTMGSAAYGQLG-VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWG 546
G +YT G + YGQLG + D L+P +++ ++ SF+ +++ GA H ALTS K+Y WG
Sbjct: 234 GALYTYGWSKYGQLGHGDLEDHLIPHKLE-ALSNSFISQISGGARHTXALTSDGKLYGWG 292
Query: 547 KGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
GQ+G G+ ++ SP V F D++V +V CG T +
Sbjct: 293 WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAV 334
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 173/333 (51%), Gaps = 23/333 (6%)
Query: 243 ALDVHNIA---CGARHAVLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNV 298
ALD H I CGA H V ++ G E++SWG GRLGHG +D+ P I+ L G+ +
Sbjct: 54 ALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 113
Query: 299 ELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISC 358
+ +ACG+ H AVT G++ +WG +G LG G +P+K+ +GI + ++
Sbjct: 114 KQIACGDSHCLAVTXEGEVQSWG--RNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKXVAA 170
Query: 359 GLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXX 418
G HTA VT G L+ +G G +G LG GD +P V + G + + V+CG H
Sbjct: 171 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISV 230
Query: 419 XXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGH 478
G L+T+G G+LGHGD E L P + L + I Q++ G
Sbjct: 231 SYS--------------GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGA 276
Query: 479 DLSVALTTSGHVYTMGSAAYGQLGVPV-ADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
+ ALT+ G +Y G +GQ+GV D P +V + V+ V+CG H A+T
Sbjct: 277 RHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVT 335
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFL 570
+ V+ WG+G NGQLG G+ +RN P +++ L
Sbjct: 336 ERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 149/302 (49%), Gaps = 27/302 (8%)
Query: 202 DVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK 261
+V+ WG G R+G+ S +D P +++ + + IACG H + VT
Sbjct: 79 EVYSWGWGDFG--------RLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 262 QGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321
+GE+ SWG G+LG G D PQ I+ G+ ++ VA G HT AVT GDLY WG
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWG 188
Query: 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
G Y G LG G + +P +V+ + G S ++CG HT V+ +G L+T+G +G
Sbjct: 189 WGRY--GNLGLGDRTDRLVPERVT-STGGEKXSXVACGWRHTISVSYSGALYTYGWSKYG 245
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTW 441
LGHGD IP ++E L +++S G H GKL+ W
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSD--------------GKLYGW 291
Query: 442 GDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQL 501
G G++G G+ + P V D+ + QV+CG ++A+T +V+ G GQL
Sbjct: 292 GWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 351
Query: 502 GV 503
G+
Sbjct: 352 GI 353
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS 294
V ++CG RH + VT++ +F+WG + G+LG G D + P++IE LS
Sbjct: 321 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 186/392 (47%), Gaps = 29/392 (7%)
Query: 197 FDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHA 256
F G ++ WG G LGG E +P E+ L + G +
Sbjct: 16 FQGSGTIYGWGHN-HRGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTL 65
Query: 257 VLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVAC--GEYHTCAVTRS 314
VT G++++ G +GGRLG G VS P L+E + V ++ VA G H A++
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 315 GDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFT 374
G++Y+WG+ G LGHG++ C PR + +L GI + ++ G H+A VT+AG L+T
Sbjct: 126 GEVYSWGEA--EDGKLGHGNRSPCDRPRVIE-SLRGIEVVDVAAGGAHSACVTAAGDLYT 182
Query: 375 FGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXX 434
+G G +G LGH D P+ VE L+G R ++CG
Sbjct: 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDT--------- 233
Query: 435 CGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMG 494
+++WGDGD G+LG G + P + L + +V CG SVALT SG VYT G
Sbjct: 234 ---VWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 495 SAAYGQLGVPVADGL-VPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQL 553
Y +LG D + P +V G + + +A G+ H T +VYTWG GQL
Sbjct: 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVI-AIATGSLHCVCCTEDGEVYTWGDNDEGQL 349
Query: 554 GHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFT 585
G G + P LV L+ K+V RV CG T
Sbjct: 350 GDGTTNAIQRPRLVAALQGKKVNRVACGSAHT 381
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 148/311 (47%), Gaps = 22/311 (7%)
Query: 235 PKAVESTMALDVHNIAC--GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEI 292
P +ES + + +A G +H + ++ +GE++SWGE G+LGHG + P++IE
Sbjct: 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES 155
Query: 293 LSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIH 352
L G+ V VA G H+ VT +GDLYTWG G Y G LGH P+ V L G
Sbjct: 156 LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRY--GRLGHSDSEDQLKPKLVEA-LQGHR 212
Query: 353 LSYISCGLW--HTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSC 410
+ I+CG T +T ++++GDG +G LG G +P ++++L GL +V C
Sbjct: 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272
Query: 411 GVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDEN 470
G G ++TWG GD RLGHG + P V L +
Sbjct: 273 G--------------SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 471 ICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA 530
+ +A G V T G VYT G GQLG + + R+ + V VACG+
Sbjct: 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGS 378
Query: 531 YHVAALTSTSK 541
H A STSK
Sbjct: 379 AHTLAW-STSK 388
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 436 GKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGS 495
G++++WG+ + G+LGHG++ P P + L + VA G S +T +G +YT G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 496 AAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA--YHVAALTSTSKVYTWGKGANGQL 553
YG+LG ++ + ++ + V ++ACG+ LT V++WG G G+L
Sbjct: 186 GRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245
Query: 554 GHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
G G D P +D L V +V CG F+ +
Sbjct: 246 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%)
Query: 482 VALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSK 541
+AL++ G VY+ G A G+LG RV + V +VA G H A +T+
Sbjct: 120 LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGD 179
Query: 542 VYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICL 590
+YTWGKG G+LGH D +++ P LV+ L+ +V + CG +CL
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL 228
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 154/380 (40%), Gaps = 41/380 (10%)
Query: 200 LGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMAL-DVHNIACGARHAVL 258
LG+V + G G G LG GE D L K + + D +I+ G H ++
Sbjct: 42 LGNVLVCGNGDV-GQLGLGE-----------DILERKRLSPVAGIPDAVDISAGGMHNLV 89
Query: 259 VTKQGEIFSWGEESGGRLGHGREAD--VSHPQLIEILSGVNVELVACGEYHTCAVTRSGD 316
+TK G+I+S+G G LG D S P LI++ ++ G+ H+ + G
Sbjct: 90 LTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGR 147
Query: 317 LYTWG---DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLF 373
++ WG D N GL G+K R ++G I+ G H ++T+AG +F
Sbjct: 148 VFAWGSFRDSHGNMGLTIDGNK------RTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 374 TFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXX 433
T G G LG S S E RG R +
Sbjct: 202 TVGCAEQGQLGRLSERSIS----GEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMR 257
Query: 434 XCGKLFTWGDG--DKGRLGHGDKEPRLFPECVAPLIDE--NICQVACGHDLSVALTTSGH 489
W G + +L H K + P+ E +I +A G +V LTT
Sbjct: 258 ESQTQVIWATGLNNFKQLAHETKGKEF---ALTPIKTELKDIRHIAGGQHHTVILTTDLK 314
Query: 490 VYTMGSAAYGQLGVPVADGLV--PTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGK 547
+G YG+LG+ +V PT V ++ E V V CG A+T K+Y+WG
Sbjct: 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVK-KLTEKIV-SVGCGEVCSYAVTIDGKLYSWGS 372
Query: 548 GANGQLGHGDKDNRNSPTLV 567
G N QLG GD D+ P +V
Sbjct: 373 GVNNQLGVGDGDDELEPIVV 392
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 204 FIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQG 263
IW G+ N F G F AL P E D+ +IA G H V++T
Sbjct: 263 VIWATGL-NNFKQLAHETKGKEF-----ALTPIKTELK---DIRHIAGGQHHTVILTTDL 313
Query: 264 EIFSWGEESGGRLGHGREADV-SHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD 322
+ G GRLG G DV P +++ L+ V V CGE + AVT G LY+WG
Sbjct: 314 KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGS 372
Query: 323 GTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSA 369
G N +G G I VS N G H+ S G H + A
Sbjct: 373 GVNNQLGVGDGDDELEPIV-VVSKNTQGKHMLLASGGGQHAIFLVKA 418
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 436 GKLFTWGDGDKGRLGHGD---KEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYT 492
G + G+GD G+LG G+ + RL P P + ++ G ++ LT SG +Y+
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP----DAVDISAGGMHNLVLTKSGDIYS 98
Query: 493 MGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWG--KGAN 550
G G LG ++ ++ D ++ G H A L +V+ WG + ++
Sbjct: 99 FGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSH 158
Query: 551 GQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588
G +G N+ +P +D ++ + G + I+
Sbjct: 159 GNMGLTIDGNKRTP--IDLMEGTVCCSIASGADHLVIL 194
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 172/402 (42%), Gaps = 58/402 (14%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G V G+G G LG GE+ R+ AL+ ++ DV G H V ++
Sbjct: 27 GLVLTLGQGDV-GQLGLGEN----VMERKKPALV------SIPEDVVQAEAGGMHTVCLS 75
Query: 261 KQGEIFSWGEESGGRLGHGREADVSH--PQLIEILSGVNVELVACGEYHTCAVTRSGDLY 318
K G+++S+G G LG + S P +E+ V V+ G+ HT A+T G ++
Sbjct: 76 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVF 133
Query: 319 TWGDGTYNSGLLGHGSKV-SCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD 377
WG N+G++G + +P +V LD + + ++ G H ++T+ G L+T G
Sbjct: 134 LWGSFRDNNGVIGLLEPMKKSMVPVQV--QLD-VPVVKVASGNDHLVMLTADGDLYTLGC 190
Query: 378 GSFGALGHGDHISTS-----------IPREV----ETLRG-LRTTRVSCGVWHXXXXXXX 421
G G LG + + +P+ V RG +R CG +
Sbjct: 191 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 250
Query: 422 XXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQV--ACGHD 479
G ++ +G + +LG E P+ + + V + G
Sbjct: 251 --------------GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 296
Query: 480 LSVALTTSGHVYTMGSAAYGQLGV--PVADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
+V + + G Y++G A YG+LG+ + +PT + A V VACGA A+T
Sbjct: 297 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA---VSSVACGASVGYAVT 353
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVV 579
+V+ WG G N QLG G ++ SP V+ + + RVV
Sbjct: 354 KDGRVFAWGMGTNYQLGTGQDEDAWSP--VEMMGKQLENRVV 393
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 152/353 (43%), Gaps = 62/353 (17%)
Query: 260 TKQGEIFSWGEESGGRLGHGREA-DVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLY 318
T+ G + + G+ G+LG G + P L+ I +V G HT +++SG +Y
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVY 81
Query: 319 TWGDGTYNSGLLGHGSKV--SCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFG 376
++G + G LG + V S +P KV + +S G HTA +T G +F +G
Sbjct: 82 SFG--CNDEGALGRDTSVEGSEMVPGKVELQEKVVQ---VSAGDSHTAALTDDGRVFLWG 136
Query: 377 DGSF----GALGHGDHISTS-IPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXX 431
SF G +G + + S +P +V+ + +V+ G H
Sbjct: 137 --SFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTAD---------- 182
Query: 432 XXXCGKLFTWGDGDKGRLGHGDKEPRLF--------------PECVAPLIDENICQVA-- 475
G L+T G G++G+LG + P LF P+CV + V
Sbjct: 183 ----GDLYTLGCGEQGQLG---RVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 235
Query: 476 ---CGHDLSVALTTSGHVYTMGSAAYGQLGVPVADG-LVPTRVDG--EIAESFVEEVACG 529
CG + A++ GHVY G + Y QLG P + +P + +S+V + G
Sbjct: 236 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV-GFSGG 294
Query: 530 AYHVAALTSTSKVYTWGKGANGQLGHGD-KDNRNSPTLVDFLKDKQVKRVVCG 581
+H + S K Y+ G+ G+LG G+ + ++ PTL+ L V V CG
Sbjct: 295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACG 345
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 134/341 (39%), Gaps = 43/341 (12%)
Query: 219 EHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWG--EESGGRL 276
E +G S + ++P VE + V ++ G H +T G +F WG ++ G +
Sbjct: 88 EGALGRDTSVEGSEMVPGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVI 145
Query: 277 GHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKV 336
G S +++ V V VA G H +T GDLYT G G G LG ++
Sbjct: 146 GLLEPMKKSMVP-VQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPEL 202
Query: 337 -----------SCWIPR----KVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
+P+ K G+ + CG + T ++ GH++ FG ++
Sbjct: 203 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 262
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRV--SCGVWHXXXXXXXXXXXXXXXXXXXXCGKLF 439
LG S IP+ + + + + V S G H GK +
Sbjct: 263 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSE--------------GKAY 308
Query: 440 TWGDGDKGRLGHGD-KEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAY 498
+ G + GRLG G+ E + P ++ L + VACG + A+T G V+ G
Sbjct: 309 SLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTN 366
Query: 499 GQLGVPV-ADGLVPTRVDGEIAES-FVEEVACGAYHVAALT 537
QLG D P + G+ E+ V V+ G H L
Sbjct: 367 YQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHP--QLIEILSGVNVELVAC 303
V ++ACGA VTK G +F+WG + +LG G++ D P + + L V V+
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 398
Query: 304 GEYHTCAVTR 313
G HT + +
Sbjct: 399 GGQHTVLLVK 408
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 172/402 (42%), Gaps = 58/402 (14%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G V G+G G LG GE+ R+ AL+ ++ DV G H V ++
Sbjct: 16 GLVLTLGQGDV-GQLGLGEN----VMERKKPALV------SIPEDVVQAEAGGMHTVCLS 64
Query: 261 KQGEIFSWGEESGGRLGHGREADVSH--PQLIEILSGVNVELVACGEYHTCAVTRSGDLY 318
K G+++S+G G LG + S P +E+ V V+ G+ HT A+T G ++
Sbjct: 65 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVF 122
Query: 319 TWGDGTYNSGLLGHGSKV-SCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD 377
WG N+G++G + +P +V LD + + ++ G H ++T+ G L+T G
Sbjct: 123 LWGSFRDNNGVIGLLEPMKKSMVPVQV--QLD-VPVVKVASGNDHLVMLTADGDLYTLGC 179
Query: 378 GSFGALGHGDHISTS-----------IPREV----ETLRG-LRTTRVSCGVWHXXXXXXX 421
G G LG + + +P+ V RG +R CG +
Sbjct: 180 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 239
Query: 422 XXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQV--ACGHD 479
G ++ +G + +LG E P+ + + V + G
Sbjct: 240 --------------GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH 285
Query: 480 LSVALTTSGHVYTMGSAAYGQLGV--PVADGLVPTRVDGEIAESFVEEVACGAYHVAALT 537
+V + + G Y++G A YG+LG+ + +PT + A V VACGA A+T
Sbjct: 286 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA---VSSVACGASVGYAVT 342
Query: 538 STSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVV 579
+V+ WG G N QLG G ++ SP V+ + + RVV
Sbjct: 343 KDGRVFAWGMGTNYQLGTGQDEDAWSP--VEMMGKQLENRVV 382
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 152/353 (43%), Gaps = 62/353 (17%)
Query: 260 TKQGEIFSWGEESGGRLGHGREA-DVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLY 318
T+ G + + G+ G+LG G + P L+ I +V G HT +++SG +Y
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVY 70
Query: 319 TWGDGTYNSGLLGHGSKV--SCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFG 376
++G + G LG + V S +P KV + +S G HTA +T G +F +G
Sbjct: 71 SFG--CNDEGALGRDTSVEGSEMVPGKVELQEKVVQ---VSAGDSHTAALTDDGRVFLWG 125
Query: 377 DGSF----GALGHGDHISTS-IPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXX 431
SF G +G + + S +P +V+ + +V+ G H
Sbjct: 126 --SFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTAD---------- 171
Query: 432 XXXCGKLFTWGDGDKGRLGHGDKEPRLF--------------PECVAPLIDENICQVA-- 475
G L+T G G++G+LG + P LF P+CV + V
Sbjct: 172 ----GDLYTLGCGEQGQLG---RVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQ 224
Query: 476 ---CGHDLSVALTTSGHVYTMGSAAYGQLGVPVADG-LVPTRVDG--EIAESFVEEVACG 529
CG + A++ GHVY G + Y QLG P + +P + +S+V + G
Sbjct: 225 DAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV-GFSGG 283
Query: 530 AYHVAALTSTSKVYTWGKGANGQLGHGD-KDNRNSPTLVDFLKDKQVKRVVCG 581
+H + S K Y+ G+ G+LG G+ + ++ PTL+ L V V CG
Sbjct: 284 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACG 334
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 134/341 (39%), Gaps = 43/341 (12%)
Query: 219 EHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWG--EESGGRL 276
E +G S + ++P VE + V ++ G H +T G +F WG ++ G +
Sbjct: 77 EGALGRDTSVEGSEMVPGKVE--LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVI 134
Query: 277 GHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKV 336
G S +++ V V VA G H +T GDLYT G G G LG ++
Sbjct: 135 GLLEPMKKSMVP-VQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCG--EQGQLGRVPEL 191
Query: 337 -----------SCWIPR----KVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFG 381
+P+ K G+ + CG + T ++ GH++ FG ++
Sbjct: 192 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 251
Query: 382 ALGHGDHISTSIPREVETLRGLRTTRV--SCGVWHXXXXXXXXXXXXXXXXXXXXCGKLF 439
LG S IP+ + + + + V S G H GK +
Sbjct: 252 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSE--------------GKAY 297
Query: 440 TWGDGDKGRLGHGD-KEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAY 498
+ G + GRLG G+ E + P ++ L + VACG + A+T G V+ G
Sbjct: 298 SLGRAEYGRLGLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTN 355
Query: 499 GQLGVPV-ADGLVPTRVDGEIAES-FVEEVACGAYHVAALT 537
QLG D P + G+ E+ V V+ G H L
Sbjct: 356 YQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 396
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 246 VHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHP--QLIEILSGVNVELVAC 303
V ++ACGA VTK G +F+WG + +LG G++ D P + + L V V+
Sbjct: 328 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 387
Query: 304 GEYHTCAVTR 313
G HT + +
Sbjct: 388 GGQHTVLLVK 397
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 99/451 (21%), Positives = 164/451 (36%), Gaps = 101/451 (22%)
Query: 202 DVFIWGEGIANGFLGGGEHRVGYSFSR-QTDALLPKAVESTMALDVHNIACGARHAVLVT 260
D+F WG G + LG G R + + LP+ ++ A G H + +
Sbjct: 30 DIFCWGTG-SMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISF-----AVGGMHTLALD 83
Query: 261 KQGEIFSWGEESGGRLG-----------------------------HGREADVSHPQLIE 291
++ ++SWG G LG A +
Sbjct: 84 EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143
Query: 292 ILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLG-HGSKVSCW-IPRKVSGNLD 349
+ G V +A + +CA+ +G++Y WG N G+LG + K+ P KV
Sbjct: 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVP-TFS 202
Query: 350 GIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGD----HISTSIPREVETLRGLRT 405
++ ++ G H + G +F +G+G LG + T PR GLR
Sbjct: 203 KYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF----GLRH 258
Query: 406 TR-VSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGD---------KE 455
+ ++ G H KL +WG G+ G + K
Sbjct: 259 VKYIASGENHCFALTKD--------------NKLVSWGLNQFGQCGVSEDVEDGALVTKP 304
Query: 456 PRL-FPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGL----- 509
RL P+ V I +A G S+ L+ G +Y+ G ++G+P D L
Sbjct: 305 KRLALPDNVV------IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIP-KDNLPEYTY 357
Query: 510 -----------VPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGD- 557
+PT+++ F + VA G++H A+ Y+WG G +G G
Sbjct: 358 KDVHGKARAVPLPTKLNN--VPKF-KSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPF 414
Query: 558 KDNRNSPTLVD--FLKDKQVKRVVCGLNFTA 586
+D+ PT + +D + V CG F+
Sbjct: 415 EDDTEVPTRIKNTATQDHNIILVGCGGQFSV 445
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 197 FDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHA 256
D G VF WG G N LG +V F +T P + V IA G H
Sbjct: 219 LDEEGMVFAWGNGQQNQ-LG---RKVMERFRLKTLDPRPFGLRH-----VKYIASGENHC 269
Query: 257 VLVTKQGEIFSWGEESGGRLGHGREAD----VSHPQLIEILSGVNVELVACGEYHTCAVT 312
+TK ++ SWG G+ G + + V+ P+ + + V + +A GE+H+ ++
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILS 329
Query: 313 RSGDLYTWGD-GTYNSGLLG-----------HGSKVSCWIPRKVSGNLDGIHLSYISCGL 360
+ GDLY+ G + G+ HG + +P K++ + ++ G
Sbjct: 330 QDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN---NVPKFKSVAAGS 386
Query: 361 WHTAVVTSAGHLFTFGDGSFGALGHGD-HISTSIPREVE 398
H+ V G +++G G A+G G T +P ++
Sbjct: 387 HHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 118/308 (38%), Gaps = 49/308 (15%)
Query: 199 SLGDVFIWGEGIAN-GFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAV 257
S G+V+ WG N G LG + ++ + P V + ++ +A G H +
Sbjct: 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKT-------PWKVPTFSKYNIVQLAPGKDHIL 217
Query: 258 LVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGV-NVELVACGEYHTCAVTRSGD 316
+ ++G +F+WG +LG L G+ +V+ +A GE H A+T+
Sbjct: 218 FLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNK 277
Query: 317 LYTWGDGTYNSGLLGHGSKVSCWI--PRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFT 374
L +WG + + + + P++++ D + + I+ G H+ +++ G L++
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP-DNVVIRSIAAGEHHSLILSQDGDLYS 336
Query: 375 FGDGSFGALG--------------HGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXX 420
G +G HG + +P ++ + ++ V+ G H
Sbjct: 337 CGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKS--VAAGSHHSVAVAQ 394
Query: 421 XXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKE-----PRLFPECVAPLIDENICQVA 475
G ++WG G+ +G G E P D NI V
Sbjct: 395 N--------------GIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQ--DHNIILVG 438
Query: 476 CGHDLSVA 483
CG SV+
Sbjct: 439 CGGQFSVS 446
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/338 (21%), Positives = 120/338 (35%), Gaps = 62/338 (18%)
Query: 254 RHAVLVTKQGEIFSWGEESGGRLGHG---READVSHPQLIEILSGVNVELV--ACGEYHT 308
+H L + +IF WG S LG G + +V P+L L +++ A G HT
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 309 CAVTRSGDLYTWGDGTYNSGLLGHGS---------------------------KVSCWIP 341
A+ ++++W G + G LG + IP
Sbjct: 80 LALDEESNVWSW--GCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIP 137
Query: 342 RKVSGNLDGIH-------LSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIP 394
R+ L H +SC L+ V + G F +G G I + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG-TFRCNEGILGFYQDKIKIQKT-P 195
Query: 395 REVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDK 454
+V T +++ G H G +F WG+G + +LG
Sbjct: 196 WKVPTFSKYNIVQLAPGKDHILFLDEE--------------GMVFAWGNGQQNQLGRKVM 241
Query: 455 EP-RLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVP--VADGLVP 511
E RL P ++ +A G + ALT + + G +GQ GV V DG +
Sbjct: 242 ERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301
Query: 512 TRVD--GEIAESFVEEVACGAYHVAALTSTSKVYTWGK 547
T+ + +A G +H L+ +Y+ G+
Sbjct: 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 592 KWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCD 651
KW F +RH+C CG +FC CS+ K AL PS KP RVCD
Sbjct: 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA----KNALTPSSKKPVRVCD 117
Query: 652 DCF 654
CF
Sbjct: 118 ACF 120
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 591 HKWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVC 650
H W F R++H+C NCG +FC CSS + AL PS KP RVC
Sbjct: 18 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN---ELAL-PSYPKPVRVC 73
Query: 651 DDC 653
D C
Sbjct: 74 DSC 76
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 591 HKWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVC 650
H W F R++H+C NCG +FC CSS + AL PS KP RVC
Sbjct: 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN---ELAL-PSYPKPVRVC 66
Query: 651 DDC 653
D C
Sbjct: 67 DSC 69
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 592 KWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCD 651
KW F +RH+C CG +FC CS+ K AL PS KP RVCD
Sbjct: 2 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA----KNALTPSSKKPVRVCD 57
Query: 652 DCF 654
CF
Sbjct: 58 ACF 60
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
F F ++H+C NCG VFC C++++ I K RVCD CF
Sbjct: 171 FTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYG--IEKEVRVCDGCF 214
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 614 KRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
+RH+C NCG V C CS ++ A I +P RVCD C+
Sbjct: 36 RRHHCRNCGYVLCGDCSRHRA--AIPMRGITEPERVCDACY 74
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
FG ++H+C CG +FC CSS+ S I K RVC+ C+
Sbjct: 174 FGVMTRKHHCRACGQIFCGKCSSKYSTIPKFG--IEKEVRVCEPCY 217
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
F F ++RH+C CG VFC C +RK L K RVC C+
Sbjct: 30 FTFTKRRHHCRACGKVFCGVCCNRKCKLQYL----EKEARVCVVCY 71
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
F ++H+C +CG VFC+ SS L I +P RVCD CF
Sbjct: 21 FSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLG--IYEPVRVCDSCF 64
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 9 EERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWL 66
E + + + + G RT +++ R E + FS+++ D+ +LDLI +A+ W+
Sbjct: 54 ESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWV 113
Query: 67 VGLKALI 73
GL+ +I
Sbjct: 114 QGLRKII 120
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654
F +RH+C+ CG + C+ CS K L ++ +VCD CF
Sbjct: 385 FSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK---DRXAKVCDGCF 427
>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
Length = 134
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 812 LRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862
+ +VEEL SK+ HLE E+ R K L+ AE KC E +K++T
Sbjct: 1 MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVT 51
>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFS|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
Length = 155
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE-------DEAEKCKTANEVIKSLTV 863
+L +VEEL SK+ HLE E+ R K L+ AE + E+ KT +KSL
Sbjct: 4 QLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEA 63
Query: 864 QG 865
Q
Sbjct: 64 QA 65
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835
++++E+ +L +VEEL SK+ HLE E+ R K
Sbjct: 123 AISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
>pdb|3V47|C Chain C, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|D Chain D, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 425
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 507 DGLVPTRVDGEIAESFVEEVACGAYHV--AALTSTSKVYTWGKGANGQLGHGDKDNRNSP 564
+G V T ++GE V ++A GA V A L S+ VYT NGQ DK S
Sbjct: 253 NGKVSTTINGEKVTLTVADIAIGAADVNAATLQSSKNVYTS--VVNGQFTFDDKTKNESA 310
Query: 565 TLVDFLKDKQVKR----VVCGLNFTA 586
L D + VK V G +TA
Sbjct: 311 KLSDLEANNAVKGESKITVNGAEYTA 336
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 91/240 (37%), Gaps = 65/240 (27%)
Query: 208 EGIANGFLGG----GEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQG 263
+ IA G+ G G +G+ + +P A +S V IA G H+ L K G
Sbjct: 27 DAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQS----GVDAIAAGNYHS-LALKDG 81
Query: 264 EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDG 323
E+ +WG G+ + P E SGV+ +A G + + A+ + G + WGD
Sbjct: 82 EVIAWGGNEDGQ--------TTVPA--EARSGVDA--IAAGAWASYAL-KDGKVIAWGD- 127
Query: 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGAL 383
S +P + ++ + G+ +TA+ G + +GD FG
Sbjct: 128 ---------DSDGQTTVPAEAQSG-----VTALDGGV-YTALAVKNGGVIAWGDNYFG-- 170
Query: 384 GHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGD 443
T++P E ++ V+ G++H GK+ WGD
Sbjct: 171 ------QTTVPAEAQS----GVDDVAGGIFHSLALKD---------------GKVIAWGD 205
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 91/240 (37%), Gaps = 65/240 (27%)
Query: 208 EGIANGFLGG----GEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQG 263
+ IA G+ G G +G+ + +P A +S V IA G H+ L K G
Sbjct: 29 DAIAGGYFHGLALKGGKVLGWGANLNGQLTMPAATQS----GVDAIAAGNYHS-LALKDG 83
Query: 264 EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDG 323
E+ +WG G+ + P E SGV+ +A G + + A+ + G + WGD
Sbjct: 84 EVIAWGGNEDGQ--------TTVPA--EARSGVDA--IAAGAWASYAL-KDGKVIAWGD- 129
Query: 324 TYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGAL 383
S +P + ++ + G+ +TA+ G + +GD FG
Sbjct: 130 ---------DSDGQTTVPAEAQSG-----VTALDGGV-YTALAVKNGGVIAWGDNYFG-- 172
Query: 384 GHGDHISTSIPREVETLRGLRTTRVSCGVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGD 443
T++P E ++ V+ G++H GK+ WGD
Sbjct: 173 ------QTTVPAEAQS----GVDDVAGGIFHSLALKD---------------GKVIAWGD 207
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 43 FSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGTHSKWKLGTINCSTSSDS-------- 94
F YND+ L + E ++V I +W +GT+ DS
Sbjct: 184 FIFNYNDKKLFYGDEGVSENSSYIVVNSKYIPGVDKPRWYMGTVYYQIFIDSFDNGDPNN 243
Query: 95 -PRARIRKTSPTVTPFDFGDIQGTQVPLDNVSNNGLGKAFADIISYTEAANTNSRADSVS 153
P RI+KT P + GD+ G +D++ + G+ + I ++ + R D++
Sbjct: 244 DPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLTPIF---SSTSYHRYDTID 300
Query: 154 FS 155
+
Sbjct: 301 YK 302
>pdb|1R08|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|1R09|4 Chain 4, Human Rhinovirus 14 Complexed With Antiviral Compound R
61837
pdb|1RMU|4 Chain 4, Three-Dimensional Structures Of Drug-Resistant Mutants Of
Human Rhinovirus 14
pdb|2R04|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2R06|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2R07|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RM2|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RMU|4 Chain 4, Three-Dimensional Structures Of Drug-Resistant Mutants Of
Human Rhinovirus 14
pdb|2RR1|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS1|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS3|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS5|4 Chain 4, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|4RHV|4 Chain 4, The Use Of Molecular-Replacement Phases For The Refinement
Of The Human Rhinovirus 14 Structure
pdb|1HRI|4 Chain 4, Structure Determination Of Antiviral Compound Sch 38057
Complexed With Human Rhinovirus 14
pdb|2HWB|4 Chain 4, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWC|4 Chain 4, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|1HRV|4 Chain 4, Hrv14SDZ 35-682 Complex
pdb|1RUJ|4 Chain 4, Rhinovirus 14 Mutant With Ser 1 223 Replaced By Gly
(S1223g)
pdb|1RUI|4 Chain 4, Rhinovirus 14 Mutant S1223g Complexed With Antiviral
Compound Win 52084
pdb|1RUH|4 Chain 4, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52084
pdb|1RUG|4 Chain 4, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52035
pdb|1RUF|4 Chain 4, Rhinovirus 14 (Hrv14) (Mutant With Asn 1 219 Replaced By
Ala (N219a In Chain 1)
pdb|1RUE|4 Chain 4, Rhinovirus 14 Site Directed Mutant N1219a Complexed With
Antiviral Compound Win 52035
pdb|1RUD|4 Chain 4, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52084
pdb|1RUC|4 Chain 4, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52035
pdb|1VRH|4 Chain 4, Hrv14/sdz 880-061 Complex
pdb|1RVF|4 Chain 4, Fab Complexed With Intact Human Rhinovirus
pdb|1D3I|4 Chain 4, Cryo-Em Structure Of Human Rhinovirus 14 (Hrv14) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
pdb|1K5M|D Chain D, Crystal Structure Of A Human Rhinovirus Type 14:human
Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus Mn-
Iii-2
pdb|1NA1|D Chain D, The Structure Of Hrv14 When Complexed With Pleconaril
pdb|1NCQ|D Chain D, The Structure Of Hrv14 When Complexed With Pleconaril, An
Antiviral Compound
Length = 68
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 123 NVSNNGLGKAFADIISYTEAANTNSRADSVSFSPSPLTNAFPD 165
N+ NG + F I Y +AA+T+S S+S PS T D
Sbjct: 16 NILTNGSNQTFTVINYYKDAASTSSAGQSLSMDPSKFTEPVKD 58
>pdb|2JEE|A Chain A, Xray Structure Of E. Coli Yiiu
pdb|2JEE|B Chain B, Xray Structure Of E. Coli Yiiu
pdb|2JEE|C Chain C, Xray Structure Of E. Coli Yiiu
pdb|2JEE|D Chain D, Xray Structure Of E. Coli Yiiu
Length = 81
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846
I++ K+ N+SL+QE+ + Q EEL ++ HL+ + ++L+ + E+
Sbjct: 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT-----VTAIAEDE---AEKCKTANE 856
L +E+ +L EL K + + A + K + T T I E E E K N+
Sbjct: 2134 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2193
Query: 857 VIKSLTV-QGLNSKVGLWNNQDRNRQALLWEQLGEAALKLAII 898
V +S+ + LNS+ G W Q N + +G+ L A +
Sbjct: 2194 VDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFL 2236
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT-----VTAIAEDE---AEKCKTANE 856
L +E+ +L EL K + + A + K + T T I E E E K N+
Sbjct: 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071
Query: 857 VIKSLTV-QGLNSKVGLWNNQDRNRQALLWEQLGEAALKLAII 898
V +S+ + LNS+ G W Q N + +G+ L A +
Sbjct: 2072 VDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFL 2114
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 609 FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYR----VCDDC 653
F +KR +C NCG FC C S K K+++ + + R VC C
Sbjct: 24 FSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASC 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,339,292
Number of Sequences: 62578
Number of extensions: 963873
Number of successful extensions: 2866
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2583
Number of HSP's gapped (non-prelim): 102
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)