Query 002614
Match_columns 900
No_of_seqs 705 out of 2713
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4E-46 8.8E-51 409.9 30.3 362 196-589 63-463 (476)
2 KOG1427 Uncharacterized conser 100.0 3.2E-41 6.9E-46 348.5 21.1 361 199-591 18-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 7E-40 1.5E-44 360.7 28.8 340 178-537 100-463 (476)
4 KOG1427 Uncharacterized conser 100.0 1.2E-36 2.5E-41 314.8 17.3 312 192-539 68-399 (443)
5 KOG0783 Uncharacterized conser 99.9 4.1E-26 8.9E-31 260.5 15.2 305 195-540 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 5.2E-26 1.1E-30 259.6 15.2 303 258-591 137-449 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.9E-20 4.2E-25 219.6 23.5 269 197-516 494-870 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 3E-19 6.4E-24 209.9 21.3 304 244-589 479-893 (3738)
9 cd01248 PH_PLC Phospholipase C 99.4 3.2E-13 7E-18 128.1 4.8 71 2-72 35-115 (115)
10 PF13713 BRX_N: Transcription 99.3 1.6E-12 3.5E-17 96.7 1.3 33 845-877 1-33 (39)
11 PF00415 RCC1: Regulator of ch 99.1 5E-11 1.1E-15 96.0 4.9 50 539-588 1-51 (51)
12 PF01363 FYVE: FYVE zinc finge 99.1 5.8E-12 1.3E-16 108.3 -0.7 68 591-658 1-68 (69)
13 KOG0941 E3 ubiquitin protein l 99.1 1.3E-12 2.9E-17 153.1 -9.6 191 234-488 4-197 (850)
14 PF00415 RCC1: Regulator of ch 99.0 5.3E-10 1.1E-14 90.0 5.2 50 262-311 1-51 (51)
15 smart00064 FYVE Protein presen 99.0 1.9E-10 4E-15 98.7 2.4 66 591-658 2-67 (68)
16 KOG0169 Phosphoinositide-speci 98.9 1.3E-10 2.8E-15 136.1 0.2 91 10-116 56-149 (746)
17 KOG1818 Membrane trafficking a 98.9 2.2E-10 4.8E-15 133.0 1.2 64 597-662 163-226 (634)
18 KOG1729 FYVE finger containing 98.9 3.3E-10 7.1E-15 122.3 -0.4 67 590-659 159-226 (288)
19 KOG0941 E3 ubiquitin protein l 98.9 4.9E-11 1.1E-15 140.2 -7.6 182 348-540 11-197 (850)
20 PF12814 Mcp5_PH: Meiotic cell 98.9 4.2E-09 9.1E-14 101.1 6.8 70 1-75 43-123 (123)
21 PF13540 RCC1_2: Regulator of 98.7 9.4E-09 2E-13 73.5 4.1 30 523-552 1-30 (30)
22 PF13540 RCC1_2: Regulator of 98.7 1.5E-08 3.3E-13 72.4 4.8 30 353-382 1-30 (30)
23 PTZ00303 phosphatidylinositol 98.7 4.5E-09 9.7E-14 121.1 2.6 72 589-660 449-532 (1374)
24 KOG1819 FYVE finger-containing 98.7 3E-09 6.6E-14 117.4 0.8 75 583-659 885-964 (990)
25 cd00065 FYVE FYVE domain; Zinc 98.6 2.7E-08 5.8E-13 82.1 2.1 55 599-655 2-56 (57)
26 KOG1842 FYVE finger-containing 97.8 2.1E-06 4.6E-11 95.1 -3.1 68 592-659 173-260 (505)
27 KOG1264 Phospholipase C [Lipid 97.8 9.2E-06 2E-10 95.3 1.7 68 10-77 61-134 (1267)
28 KOG1841 Smad anchor for recept 97.5 3.8E-05 8.3E-10 93.4 1.3 62 589-653 547-608 (1287)
29 KOG1409 Uncharacterized conser 97.5 3E-05 6.5E-10 83.9 0.4 84 577-662 255-354 (404)
30 KOG1843 Uncharacterized conser 97.0 0.00019 4.1E-09 79.3 0.2 68 591-659 152-220 (473)
31 cd01244 PH_RasGAP_CG9209 RAS_G 95.4 0.043 9.2E-07 50.7 6.7 62 2-71 33-97 (98)
32 KOG4424 Predicted Rho/Rac guan 95.3 0.0076 1.6E-07 69.9 1.8 63 596-661 412-475 (623)
33 smart00233 PH Pleckstrin homol 94.3 0.14 3.1E-06 45.0 7.0 54 12-73 47-101 (102)
34 KOG3669 Uncharacterized conser 94.1 9.5 0.00021 45.1 22.4 69 245-319 228-298 (705)
35 PF00169 PH: PH domain; Inter 93.8 0.25 5.5E-06 44.2 7.7 57 13-74 47-104 (104)
36 cd01235 PH_SETbf Set binding f 93.7 0.23 4.9E-06 45.5 7.3 69 2-73 29-101 (101)
37 cd01264 PH_melted Melted pleck 93.5 0.23 5E-06 46.1 6.8 54 12-71 46-99 (101)
38 cd01238 PH_Tec Tec pleckstrin 93.1 0.23 4.9E-06 46.5 6.4 67 2-71 33-105 (106)
39 PF11725 AvrE: Pathogenicity f 92.8 1.2 2.6E-05 58.2 13.7 108 467-592 701-815 (1774)
40 cd01233 Unc104 Unc-104 pleckst 92.6 0.29 6.3E-06 45.2 6.2 35 40-74 65-99 (100)
41 KOG1811 Predicted Zn2+-binding 92.6 0.015 3.2E-07 67.3 -2.9 65 590-656 313-382 (1141)
42 PF02318 FYVE_2: FYVE-type zin 92.0 0.086 1.9E-06 50.3 1.9 50 598-656 53-103 (118)
43 cd00821 PH Pleckstrin homology 91.7 0.28 6.2E-06 42.6 4.8 49 13-71 46-95 (96)
44 cd01236 PH_outspread Outspread 91.4 0.4 8.6E-06 44.8 5.6 50 13-71 53-102 (104)
45 KOG3669 Uncharacterized conser 90.4 13 0.00028 44.0 17.5 107 251-375 190-299 (705)
46 cd01251 PH_centaurin_alpha Cen 90.3 0.9 1.9E-05 42.2 6.9 35 41-75 68-102 (103)
47 TIGR02449 conserved hypothetic 90.3 2.2 4.8E-05 36.2 8.5 62 808-869 1-62 (65)
48 cd01266 PH_Gab Gab (Grb2-assoc 90.1 1.1 2.5E-05 41.8 7.5 56 12-72 52-107 (108)
49 KOG0230 Phosphatidylinositol-4 90.0 0.19 4E-06 64.5 2.7 51 599-662 5-55 (1598)
50 cd01265 PH_PARIS-1 PARIS-1 ple 89.8 0.99 2.2E-05 41.2 6.7 33 40-72 61-93 (95)
51 PF02403 Seryl_tRNA_N: Seryl-t 89.1 2.2 4.8E-05 39.8 8.7 69 806-874 35-106 (108)
52 KOG2999 Regulator of Rac1, req 87.8 0.073 1.6E-06 61.7 -2.7 64 12-75 591-661 (713)
53 KOG0943 Predicted ubiquitin-pr 86.7 0.11 2.4E-06 64.1 -2.1 133 242-380 372-507 (3015)
54 PRK15396 murein lipoprotein; P 85.4 2.8 6E-05 37.0 6.4 41 808-852 26-66 (78)
55 COG3074 Uncharacterized protei 84.1 3.1 6.7E-05 35.4 5.8 45 795-839 27-71 (79)
56 cd01246 PH_oxysterol_bp Oxyste 83.9 3.5 7.5E-05 36.5 6.7 32 40-71 58-90 (91)
57 PLN02153 epithiospecifier prot 83.8 81 0.0017 35.5 25.1 16 532-547 307-322 (341)
58 cd00900 PH-like Pleckstrin hom 83.8 3.3 7.3E-05 36.0 6.5 50 12-71 46-98 (99)
59 PF12718 Tropomyosin_1: Tropom 83.4 6.6 0.00014 38.9 8.9 72 795-867 16-91 (143)
60 PRK09973 putative outer membra 83.4 3.7 8.1E-05 36.7 6.4 42 808-853 25-66 (85)
61 PF11932 DUF3450: Protein of u 83.3 11 0.00024 40.8 11.5 89 795-884 44-133 (251)
62 COG4257 Vgb Streptogramin lyas 82.7 44 0.00096 36.6 15.1 137 193-375 65-205 (353)
63 PF12718 Tropomyosin_1: Tropom 82.2 6.2 0.00013 39.1 8.2 32 795-826 37-68 (143)
64 TIGR00414 serS seryl-tRNA synt 81.9 6.3 0.00014 46.0 9.5 37 839-875 73-109 (418)
65 PF04728 LPP: Lipoprotein leuc 81.7 7.4 0.00016 32.1 6.9 41 808-852 4-44 (56)
66 PF11725 AvrE: Pathogenicity f 81.3 5.1 0.00011 52.7 8.9 72 468-540 743-815 (1774)
67 cd01257 PH_IRS Insulin recepto 81.0 4.6 9.9E-05 37.6 6.4 49 13-71 52-100 (101)
68 KOG2391 Vacuolar sorting prote 80.9 58 0.0013 36.5 15.6 94 799-897 217-315 (365)
69 cd01260 PH_CNK Connector enhan 80.8 3.5 7.6E-05 37.4 5.6 33 39-71 62-95 (96)
70 KOG4693 Uncharacterized conser 80.5 14 0.0003 39.9 10.4 218 253-494 80-309 (392)
71 PRK11637 AmiB activator; Provi 80.5 8 0.00017 45.3 9.8 36 805-840 59-94 (428)
72 PF03904 DUF334: Domain of unk 80.3 12 0.00027 39.4 9.8 59 806-866 42-107 (230)
73 PF04849 HAP1_N: HAP1 N-termin 80.1 5.8 0.00013 43.9 7.8 53 805-871 232-284 (306)
74 PF11559 ADIP: Afadin- and alp 80.0 15 0.00033 36.4 10.3 38 805-842 71-108 (151)
75 PLN02320 seryl-tRNA synthetase 79.6 6.8 0.00015 46.5 8.8 69 807-875 93-170 (502)
76 TIGR00570 cdk7 CDK-activating 78.5 9.4 0.0002 42.4 8.8 54 598-661 2-57 (309)
77 cd01252 PH_cytohesin Cytohesin 77.8 6.3 0.00014 37.7 6.6 29 50-78 90-118 (125)
78 PRK05431 seryl-tRNA synthetase 77.7 11 0.00023 44.2 9.7 37 839-875 70-106 (425)
79 PF07888 CALCOCO1: Calcium bin 77.7 11 0.00023 45.1 9.5 46 795-840 152-197 (546)
80 PF10211 Ax_dynein_light: Axon 77.5 12 0.00027 38.7 9.0 64 805-868 125-189 (189)
81 PF03962 Mnd1: Mnd1 family; I 77.1 6.6 0.00014 40.7 6.9 21 851-871 112-132 (188)
82 PRK11637 AmiB activator; Provi 77.1 11 0.00024 44.1 9.6 68 797-864 44-111 (428)
83 PF02403 Seryl_tRNA_N: Seryl-t 77.1 7.8 0.00017 36.1 6.8 77 796-872 16-97 (108)
84 PF10186 Atg14: UV radiation r 76.2 13 0.00027 40.9 9.3 44 795-838 65-108 (302)
85 PF02183 HALZ: Homeobox associ 75.7 3.3 7.1E-05 32.7 3.2 30 795-824 14-43 (45)
86 PF11559 ADIP: Afadin- and alp 75.6 23 0.0005 35.1 10.1 66 798-863 57-122 (151)
87 KOG1900 Nuclear pore complex, 75.5 53 0.0011 42.9 15.1 218 257-496 93-340 (1311)
88 KOG0982 Centrosomal protein Nu 75.1 13 0.00028 42.5 8.8 75 794-868 298-386 (502)
89 PLN02678 seryl-tRNA synthetase 74.9 12 0.00027 43.9 9.1 69 806-874 32-110 (448)
90 cd01222 PH_clg Clg (common-sit 74.1 5.9 0.00013 36.5 5.0 36 38-73 57-95 (97)
91 KOG2106 Uncharacterized conser 74.0 1.9E+02 0.0042 34.2 21.3 87 248-374 216-303 (626)
92 PHA01750 hypothetical protein 73.8 8.8 0.00019 32.3 5.3 37 802-838 37-73 (75)
93 PF14197 Cep57_CLD_2: Centroso 73.3 42 0.00092 29.0 9.7 65 804-868 2-66 (69)
94 KOG1274 WD40 repeat protein [G 73.3 50 0.0011 41.4 13.7 72 303-380 13-88 (933)
95 cd01256 PH_dynamin Dynamin ple 73.0 8.2 0.00018 35.5 5.4 60 1-69 30-101 (110)
96 PF10168 Nup88: Nuclear pore c 72.6 17 0.00038 45.3 10.1 86 796-881 539-636 (717)
97 cd01245 PH_RasGAP_CG5898 RAS G 72.5 11 0.00025 34.7 6.5 50 13-71 47-97 (98)
98 PF14662 CCDC155: Coiled-coil 72.3 19 0.00041 37.1 8.5 48 793-840 8-55 (193)
99 KOG2059 Ras GTPase-activating 71.7 4.8 0.0001 48.6 4.7 70 2-79 598-670 (800)
100 KOG4603 TBP-1 interacting prot 71.4 16 0.00035 36.8 7.4 56 803-858 82-146 (201)
101 cd01247 PH_GPBP Goodpasture an 70.4 6.7 0.00015 35.6 4.4 32 39-70 57-89 (91)
102 KOG0649 WD40 repeat protein [G 70.4 1.6E+02 0.0035 31.8 18.1 79 242-321 61-142 (325)
103 PF04111 APG6: Autophagy prote 70.4 23 0.00051 39.7 9.6 46 796-841 53-98 (314)
104 PF07888 CALCOCO1: Calcium bin 69.8 21 0.00045 42.7 9.3 65 799-863 149-213 (546)
105 KOG3067 Translin family protei 69.7 27 0.00058 35.8 8.7 61 811-878 24-84 (226)
106 PRK09174 F0F1 ATP synthase sub 69.7 27 0.00058 36.8 9.3 54 796-849 80-133 (204)
107 PHA03098 kelch-like protein; P 69.0 1.6E+02 0.0034 35.3 17.1 17 306-323 335-351 (534)
108 KOG0612 Rho-associated, coiled 68.9 22 0.00048 45.7 9.6 55 829-883 488-542 (1317)
109 PF07106 TBPIP: Tat binding pr 68.7 9.2 0.0002 38.8 5.5 34 804-837 76-109 (169)
110 PF07569 Hira: TUP1-like enhan 68.5 18 0.00039 38.4 7.9 29 295-323 12-40 (219)
111 KOG2391 Vacuolar sorting prote 68.2 28 0.00061 38.9 9.2 50 793-842 232-281 (365)
112 cd01250 PH_centaurin Centaurin 68.1 5.9 0.00013 35.2 3.6 32 39-70 61-92 (94)
113 cd01219 PH_FGD FGD (faciogenit 68.1 7.2 0.00016 36.0 4.2 35 40-74 66-100 (101)
114 PRK08475 F0F1 ATP synthase sub 67.9 42 0.00091 34.0 10.1 57 795-851 48-104 (167)
115 PLN02153 epithiospecifier prot 67.8 2.1E+02 0.0046 32.1 21.8 17 306-323 130-146 (341)
116 PF10473 CENP-F_leu_zip: Leuci 67.2 31 0.00068 34.0 8.6 17 854-870 124-140 (140)
117 PF05377 FlaC_arch: Flagella a 67.2 25 0.00053 29.0 6.5 42 803-844 3-44 (55)
118 PRK09039 hypothetical protein; 67.1 25 0.00055 39.9 9.2 60 796-855 126-185 (343)
119 cd01220 PH_CDEP Chondrocyte-de 66.4 7.4 0.00016 36.0 3.9 35 40-74 64-98 (99)
120 PF07569 Hira: TUP1-like enhan 66.3 29 0.00063 36.8 8.9 79 467-547 11-94 (219)
121 smart00030 CLb CLUSTERIN Beta 65.7 28 0.0006 36.1 8.0 55 804-858 19-80 (206)
122 TIGR00414 serS seryl-tRNA synt 65.6 18 0.0004 42.2 7.8 65 806-870 29-97 (418)
123 PRK15422 septal ring assembly 65.4 19 0.0004 31.8 5.8 44 795-838 27-70 (79)
124 PRK14131 N-acetylneuraminic ac 65.1 2.1E+02 0.0046 32.6 16.5 18 306-323 131-148 (376)
125 PF12325 TMF_TATA_bd: TATA ele 65.0 31 0.00068 33.1 7.9 65 795-870 18-82 (120)
126 PRK14161 heat shock protein Gr 64.9 33 0.00072 35.2 8.6 68 795-863 14-81 (178)
127 PF04156 IncA: IncA protein; 64.8 40 0.00086 34.7 9.4 63 807-869 88-150 (191)
128 PF15035 Rootletin: Ciliary ro 64.8 29 0.00063 35.8 8.2 58 796-853 5-78 (182)
129 KOG0977 Nuclear envelope prote 64.6 25 0.00054 42.1 8.6 89 793-881 99-190 (546)
130 PRK14160 heat shock protein Gr 64.5 41 0.00088 35.6 9.3 69 794-863 55-123 (211)
131 TIGR03752 conj_TIGR03752 integ 64.3 31 0.00068 40.4 9.2 17 854-870 128-144 (472)
132 COG1579 Zn-ribbon protein, pos 64.3 38 0.00082 36.5 9.2 78 795-875 98-175 (239)
133 PF04977 DivIC: Septum formati 64.0 19 0.00041 31.2 5.9 35 803-837 20-54 (80)
134 COG4942 Membrane-bound metallo 63.8 60 0.0013 37.7 11.2 86 800-890 38-123 (420)
135 PRK14143 heat shock protein Gr 63.3 46 0.00099 35.9 9.7 67 796-863 63-129 (238)
136 KOG3799 Rab3 effector RIM1 and 63.1 2.7 5.9E-05 40.3 0.4 57 597-660 63-123 (169)
137 PF06785 UPF0242: Uncharacteri 63.1 25 0.00055 39.0 7.6 52 795-846 129-180 (401)
138 PF06428 Sec2p: GDP/GTP exchan 63.0 59 0.0013 30.2 9.0 36 813-848 7-43 (100)
139 COG0711 AtpF F0F1-type ATP syn 62.8 59 0.0013 32.8 10.0 54 796-849 33-86 (161)
140 PRK14148 heat shock protein Gr 62.7 51 0.0011 34.4 9.6 64 799-863 39-102 (195)
141 PRK14154 heat shock protein Gr 62.7 45 0.00098 35.1 9.2 59 804-863 56-114 (208)
142 PF09304 Cortex-I_coil: Cortex 62.5 76 0.0016 29.8 9.5 47 795-841 25-71 (107)
143 PRK14155 heat shock protein Gr 62.3 38 0.00083 35.7 8.7 60 803-863 16-75 (208)
144 KOG0241 Kinesin-like protein [ 62.2 29 0.00063 43.4 8.6 74 796-872 360-434 (1714)
145 KOG1029 Endocytic adaptor prot 62.2 21 0.00046 43.7 7.4 46 793-838 472-517 (1118)
146 PRK05431 seryl-tRNA synthetase 62.1 20 0.00044 42.0 7.4 44 796-839 16-60 (425)
147 COG0497 RecN ATPase involved i 61.9 28 0.0006 41.9 8.4 69 795-869 320-388 (557)
148 PF00261 Tropomyosin: Tropomyo 61.9 59 0.0013 34.9 10.4 73 797-869 117-189 (237)
149 KOG0320 Predicted E3 ubiquitin 61.9 2.1 4.5E-05 43.3 -0.7 49 600-660 132-180 (187)
150 PRK10884 SH3 domain-containing 61.8 58 0.0013 34.3 9.9 53 795-847 88-140 (206)
151 PRK14153 heat shock protein Gr 61.5 37 0.00081 35.4 8.3 68 795-863 26-95 (194)
152 PF06005 DUF904: Protein of un 61.3 1E+02 0.0023 26.8 9.8 17 851-867 55-71 (72)
153 PF13863 DUF4200: Domain of un 61.2 79 0.0017 30.1 10.2 73 800-872 25-97 (126)
154 PF06008 Laminin_I: Laminin Do 61.0 82 0.0018 34.3 11.5 79 799-877 44-125 (264)
155 KOG0278 Serine/threonine kinas 60.9 1.2E+02 0.0025 33.0 11.8 39 285-323 134-173 (334)
156 TIGR02338 gimC_beta prefoldin, 60.5 32 0.0007 32.3 7.2 75 803-877 6-102 (110)
157 PRK10869 recombination and rep 60.0 25 0.00055 42.6 8.0 20 850-869 368-387 (553)
158 PRK13729 conjugal transfer pil 59.8 37 0.0008 39.9 8.7 53 820-872 75-127 (475)
159 PF10186 Atg14: UV radiation r 59.7 50 0.0011 36.1 9.7 34 805-838 61-94 (302)
160 PF04728 LPP: Lipoprotein leuc 59.4 39 0.00085 28.0 6.3 39 802-840 5-43 (56)
161 KOG0230 Phosphatidylinositol-4 59.1 4.1 8.9E-05 53.0 1.0 31 597-629 95-125 (1598)
162 cd01254 PH_PLD Phospholipase D 58.7 28 0.00062 33.2 6.5 59 13-71 60-120 (121)
163 PRK00409 recombination and DNA 58.7 43 0.00093 42.4 9.9 14 58-71 39-52 (782)
164 PF11932 DUF3450: Protein of u 58.6 60 0.0013 35.1 9.8 45 797-841 53-97 (251)
165 PRK14139 heat shock protein Gr 58.5 61 0.0013 33.6 9.2 61 802-863 34-94 (185)
166 PF08317 Spc7: Spc7 kinetochor 58.4 27 0.00058 39.4 7.3 35 799-833 215-249 (325)
167 PF03310 Cauli_DNA-bind: Cauli 58.2 48 0.001 31.7 7.6 22 844-865 50-71 (121)
168 PHA02713 hypothetical protein; 58.2 2E+02 0.0043 35.0 15.2 20 304-323 341-360 (557)
169 KOG1729 FYVE finger containing 57.8 3.7 8E-05 45.3 0.3 64 593-656 14-81 (288)
170 COG0172 SerS Seryl-tRNA synthe 57.8 49 0.0011 38.6 9.3 71 805-875 34-108 (429)
171 PF01025 GrpE: GrpE; InterPro 57.7 25 0.00054 35.3 6.3 97 797-895 8-108 (165)
172 PF03961 DUF342: Protein of un 57.4 31 0.00067 40.7 7.9 20 852-871 385-404 (451)
173 KOG0639 Transducin-like enhanc 57.4 86 0.0019 36.9 10.8 88 795-882 18-139 (705)
174 PRK14141 heat shock protein Gr 57.2 48 0.001 35.0 8.3 60 803-863 34-93 (209)
175 PF04156 IncA: IncA protein; 57.1 82 0.0018 32.3 10.2 25 797-821 85-109 (191)
176 KOG2196 Nuclear porin [Nuclear 57.1 60 0.0013 34.7 8.9 77 794-870 121-206 (254)
177 PF10805 DUF2730: Protein of u 57.0 60 0.0013 30.4 8.2 66 806-871 34-101 (106)
178 KOG0943 Predicted ubiquitin-pr 57.0 8.8 0.00019 48.6 3.2 79 468-546 373-454 (3015)
179 PRK03564 formate dehydrogenase 57.0 6.7 0.00014 43.7 2.1 74 579-661 192-266 (309)
180 PF07851 TMPIT: TMPIT-like pro 56.8 56 0.0012 36.8 9.2 75 801-875 5-94 (330)
181 TIGR02894 DNA_bind_RsfA transc 56.5 39 0.00084 34.0 7.1 48 795-842 99-146 (161)
182 TIGR01063 gyrA DNA gyrase, A s 56.3 5.4E+02 0.012 32.9 21.8 121 250-384 543-674 (800)
183 KOG0804 Cytoplasmic Zn-finger 56.3 62 0.0014 37.5 9.5 41 799-839 360-400 (493)
184 TIGR01069 mutS2 MutS2 family p 56.2 50 0.0011 41.8 9.8 18 57-74 38-55 (771)
185 PRK06231 F0F1 ATP synthase sub 56.2 84 0.0018 33.1 10.1 54 796-849 75-128 (205)
186 PRK14472 F0F1 ATP synthase sub 56.2 88 0.0019 31.8 10.1 54 796-849 45-98 (175)
187 smart00787 Spc7 Spc7 kinetocho 56.2 29 0.00063 38.9 7.0 28 806-833 217-244 (312)
188 PF05082 Rop-like: Rop-like; 55.9 25 0.00054 30.1 4.8 12 864-875 24-35 (66)
189 PF14662 CCDC155: Coiled-coil 55.9 87 0.0019 32.5 9.6 74 795-868 31-107 (193)
190 PRK06568 F0F1 ATP synthase sub 55.8 1E+02 0.0022 30.9 10.1 23 826-848 61-83 (154)
191 PF08647 BRE1: BRE1 E3 ubiquit 55.7 77 0.0017 29.1 8.6 53 803-869 13-65 (96)
192 PF10046 BLOC1_2: Biogenesis o 55.7 1.3E+02 0.0029 27.7 10.1 47 795-841 23-69 (99)
193 PRK14158 heat shock protein Gr 55.6 1.1E+02 0.0023 32.0 10.5 65 798-863 38-102 (194)
194 PF12325 TMF_TATA_bd: TATA ele 55.4 93 0.002 29.9 9.3 61 795-855 39-102 (120)
195 PF10473 CENP-F_leu_zip: Leuci 55.3 1.1E+02 0.0024 30.3 10.0 47 796-842 20-66 (140)
196 PF03904 DUF334: Domain of unk 54.9 38 0.00082 35.9 7.0 96 795-891 45-157 (230)
197 KOG0239 Kinesin (KAR3 subfamil 54.9 64 0.0014 40.1 10.2 77 795-871 236-315 (670)
198 KOG0315 G-protein beta subunit 54.8 3.2E+02 0.0069 29.8 20.8 143 195-377 46-196 (311)
199 PF11365 DUF3166: Protein of u 54.7 11 0.00025 34.5 2.8 86 795-880 3-93 (96)
200 PF10458 Val_tRNA-synt_C: Valy 54.4 28 0.0006 29.6 5.1 62 806-868 3-65 (66)
201 COG4238 Murein lipoprotein [Ce 54.3 50 0.0011 28.8 6.4 43 806-852 24-66 (78)
202 PF14569 zf-UDP: Zinc-binding 54.1 3.6 7.8E-05 36.0 -0.4 57 595-660 5-64 (80)
203 PF05278 PEARLI-4: Arabidopsis 54.1 47 0.001 36.3 7.8 66 808-873 167-238 (269)
204 KOG4403 Cell surface glycoprot 54.1 36 0.00079 39.0 7.2 51 802-852 304-374 (575)
205 PRK14162 heat shock protein Gr 53.8 85 0.0019 32.8 9.4 63 800-863 39-101 (194)
206 PRK14156 heat shock protein Gr 53.7 1.3E+02 0.0029 30.9 10.7 58 805-863 32-89 (177)
207 PF13815 Dzip-like_N: Iguana/D 53.6 24 0.00052 33.6 5.1 44 795-838 68-111 (118)
208 PF15619 Lebercilin: Ciliary p 52.8 63 0.0014 33.7 8.4 64 808-871 119-186 (194)
209 COG1340 Uncharacterized archae 52.5 63 0.0014 35.8 8.5 78 795-877 202-279 (294)
210 PF08317 Spc7: Spc7 kinetochor 52.4 79 0.0017 35.6 9.8 19 796-814 180-198 (325)
211 PRK13455 F0F1 ATP synthase sub 52.2 1.1E+02 0.0023 31.5 10.0 52 798-849 56-107 (184)
212 COG0576 GrpE Molecular chapero 51.8 86 0.0019 32.7 9.2 60 803-863 39-98 (193)
213 PF03920 TLE_N: Groucho/TLE N- 51.7 34 0.00073 33.3 5.6 44 793-836 16-59 (135)
214 KOG3551 Syntrophins (type beta 51.6 18 0.00039 40.9 4.3 45 31-75 227-273 (506)
215 TIGR01562 FdhE formate dehydro 51.5 7.9 0.00017 43.1 1.6 55 599-662 210-267 (305)
216 PRK06568 F0F1 ATP synthase sub 51.5 1.3E+02 0.0029 30.2 10.1 49 804-852 49-102 (154)
217 CHL00118 atpG ATP synthase CF0 51.5 1.2E+02 0.0026 30.2 10.0 55 796-850 49-103 (156)
218 PF14643 DUF4455: Domain of un 51.5 48 0.001 39.4 8.2 33 846-878 98-130 (473)
219 PLN02400 cellulose synthase 51.4 10 0.00022 48.5 2.7 53 599-660 36-91 (1085)
220 KOG0315 G-protein beta subunit 51.1 3.6E+02 0.0078 29.4 19.9 61 361-444 137-197 (311)
221 PF01093 Clusterin: Clusterin; 51.0 75 0.0016 37.2 9.3 56 804-859 13-75 (436)
222 PF00038 Filament: Intermediat 51.0 98 0.0021 34.3 10.3 78 795-872 63-151 (312)
223 PRK14151 heat shock protein Gr 51.0 89 0.0019 32.1 9.0 59 804-863 24-82 (176)
224 TIGR02449 conserved hypothetic 50.8 71 0.0015 27.3 6.8 49 795-843 9-57 (65)
225 PRK05759 F0F1 ATP synthase sub 50.5 1.3E+02 0.0028 29.8 10.1 53 797-849 32-84 (156)
226 KOG2264 Exostosin EXT1L [Signa 50.4 67 0.0015 38.1 8.7 71 794-871 80-150 (907)
227 CHL00019 atpF ATP synthase CF0 50.3 1.2E+02 0.0026 31.1 10.1 56 796-851 51-106 (184)
228 TIGR03185 DNA_S_dndD DNA sulfu 50.1 58 0.0013 40.4 9.0 19 850-868 450-468 (650)
229 PRK14145 heat shock protein Gr 50.0 1.9E+02 0.0042 30.2 11.3 70 798-868 43-112 (196)
230 PHA02047 phage lambda Rz1-like 49.9 39 0.00084 30.9 5.3 38 795-832 36-73 (101)
231 PRK13729 conjugal transfer pil 49.9 27 0.00058 41.0 5.6 10 804-813 80-89 (475)
232 COG1340 Uncharacterized archae 49.7 93 0.002 34.5 9.3 35 836-870 208-242 (294)
233 PRK14131 N-acetylneuraminic ac 49.5 4.5E+02 0.0097 30.0 17.9 18 361-378 131-148 (376)
234 PF05957 DUF883: Bacterial pro 49.3 1.5E+02 0.0032 26.9 9.3 47 803-849 1-48 (94)
235 smart00338 BRLZ basic region l 49.2 43 0.00094 28.2 5.4 36 802-837 28-63 (65)
236 KOG1265 Phospholipase C [Lipid 49.2 24 0.00051 44.0 5.1 74 2-75 47-136 (1189)
237 PRK07352 F0F1 ATP synthase sub 49.1 1.3E+02 0.0029 30.5 10.1 54 797-850 47-100 (174)
238 COG4026 Uncharacterized protei 49.1 1.1E+02 0.0023 32.4 9.1 69 818-888 132-203 (290)
239 PF12495 Vip3A_N: Vegetative i 48.8 1.4E+02 0.0031 28.4 9.1 35 839-873 109-143 (177)
240 PF06103 DUF948: Bacterial pro 48.8 1.5E+02 0.0032 26.6 9.2 22 799-820 25-46 (90)
241 PF09728 Taxilin: Myosin-like 48.7 97 0.0021 34.7 9.6 66 804-869 132-215 (309)
242 PRK14147 heat shock protein Gr 48.6 95 0.0021 31.8 8.7 58 805-863 23-80 (172)
243 KOG2164 Predicted E3 ubiquitin 48.6 8.4 0.00018 45.1 1.3 55 599-662 186-240 (513)
244 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.5 1.7E+02 0.0038 28.3 10.3 15 805-819 8-22 (132)
245 TIGR03752 conj_TIGR03752 integ 48.5 1.1E+02 0.0024 36.1 10.1 69 804-872 70-139 (472)
246 PF09304 Cortex-I_coil: Cortex 48.2 87 0.0019 29.4 7.5 56 793-849 30-85 (107)
247 PF13094 CENP-Q: CENP-Q, a CEN 48.1 93 0.002 31.2 8.6 58 793-850 20-84 (160)
248 KOG4441 Proteins containing BT 47.9 2.4E+02 0.0053 34.4 13.6 57 483-547 471-530 (571)
249 PF00628 PHD: PHD-finger; Int 47.9 14 0.0003 29.3 2.1 49 602-655 2-50 (51)
250 KOG0804 Cytoplasmic Zn-finger 47.8 82 0.0018 36.6 8.7 11 617-627 242-252 (493)
251 PF05082 Rop-like: Rop-like; 47.8 60 0.0013 27.8 5.8 61 808-868 3-63 (66)
252 KOG0946 ER-Golgi vesicle-tethe 47.3 1.1E+02 0.0025 38.0 10.3 77 797-873 640-716 (970)
253 KOG0993 Rab5 GTPase effector R 47.3 0.8 1.7E-05 51.3 -6.8 65 592-660 461-527 (542)
254 COG2433 Uncharacterized conser 47.3 84 0.0018 37.9 9.0 22 523-544 246-268 (652)
255 PLN02638 cellulose synthase A 47.0 10 0.00022 48.4 1.8 52 599-659 17-71 (1079)
256 PRK14144 heat shock protein Gr 46.6 1.2E+02 0.0025 31.9 9.1 59 804-863 49-107 (199)
257 PF07160 DUF1395: Protein of u 46.6 1E+02 0.0022 33.4 9.0 71 807-877 6-81 (243)
258 COG4345 Uncharacterized protei 46.5 78 0.0017 31.9 7.3 46 822-867 126-171 (181)
259 PF05103 DivIVA: DivIVA protei 46.5 4.1 8.8E-05 39.2 -1.5 16 834-849 73-88 (131)
260 KOG0649 WD40 repeat protein [G 46.5 2.4E+02 0.0052 30.6 11.3 48 351-399 63-111 (325)
261 PRK13460 F0F1 ATP synthase sub 46.5 1.6E+02 0.0034 30.0 10.0 54 796-849 43-96 (173)
262 KOG0291 WD40-repeat-containing 46.3 7E+02 0.015 31.3 20.0 261 177-503 292-557 (893)
263 smart00787 Spc7 Spc7 kinetocho 46.2 1.1E+02 0.0024 34.4 9.6 23 795-817 174-196 (312)
264 PRK14473 F0F1 ATP synthase sub 46.2 1.6E+02 0.0035 29.5 10.1 54 796-849 35-88 (164)
265 KOG1587 Cytoplasmic dynein int 46.0 6.3E+02 0.014 30.8 16.4 23 353-375 353-375 (555)
266 PRK00888 ftsB cell division pr 45.8 57 0.0012 30.6 6.1 32 804-835 31-62 (105)
267 TIGR01069 mutS2 MutS2 family p 45.8 78 0.0017 40.1 9.2 41 805-848 530-570 (771)
268 KOG4657 Uncharacterized conser 45.7 66 0.0014 34.0 7.0 46 806-851 92-140 (246)
269 smart00502 BBC B-Box C-termina 45.6 1.8E+02 0.004 26.9 9.9 44 795-838 9-52 (127)
270 PF01286 XPA_N: XPA protein N- 45.5 15 0.00033 27.2 1.8 29 617-656 5-33 (34)
271 PF07798 DUF1640: Protein of u 45.4 83 0.0018 32.2 7.9 14 826-839 125-138 (177)
272 PF07851 TMPIT: TMPIT-like pro 45.4 1.4E+02 0.0031 33.6 10.2 78 805-890 2-79 (330)
273 PF06428 Sec2p: GDP/GTP exchan 45.4 39 0.00085 31.4 4.9 73 799-871 7-80 (100)
274 PRK07353 F0F1 ATP synthase sub 45.4 1.8E+02 0.004 28.1 10.0 55 796-850 32-86 (140)
275 PRK13453 F0F1 ATP synthase sub 45.3 1.7E+02 0.0036 29.8 10.0 53 796-848 45-97 (173)
276 PF00038 Filament: Intermediat 45.3 1.3E+02 0.0027 33.5 10.0 67 800-866 47-113 (312)
277 smart00340 HALZ homeobox assoc 45.3 31 0.00067 26.7 3.3 27 796-822 8-34 (44)
278 KOG1760 Molecular chaperone Pr 45.2 2.1E+02 0.0045 27.6 9.5 70 799-868 29-117 (131)
279 PF05911 DUF869: Plant protein 45.2 49 0.0011 41.6 7.1 72 797-869 677-760 (769)
280 PF13935 Ead_Ea22: Ead/Ea22-li 45.2 1.4E+02 0.0031 29.3 9.2 59 805-863 72-133 (139)
281 PF14932 HAUS-augmin3: HAUS au 44.8 1.2E+02 0.0025 33.1 9.3 83 804-888 86-169 (256)
282 KOG0976 Rho/Rac1-interacting s 44.8 86 0.0019 38.8 8.6 42 799-840 91-132 (1265)
283 PRK00409 recombination and DNA 44.2 85 0.0018 39.9 9.2 39 829-867 556-595 (782)
284 PF12777 MT: Microtubule-bindi 43.9 66 0.0014 36.6 7.5 53 811-863 239-291 (344)
285 PHA02713 hypothetical protein; 43.8 2.4E+02 0.0052 34.3 12.8 16 362-377 344-359 (557)
286 PRK14163 heat shock protein Gr 43.8 1.5E+02 0.0032 31.5 9.4 64 799-863 39-102 (214)
287 PRK09973 putative outer membra 43.7 74 0.0016 28.7 6.1 40 802-841 26-65 (85)
288 PF04841 Vps16_N: Vps16, N-ter 43.7 5.9E+02 0.013 29.7 18.7 70 244-321 81-153 (410)
289 PF05622 HOOK: HOOK protein; 43.6 7.8 0.00017 48.5 0.0 81 796-876 277-383 (713)
290 PF13874 Nup54: Nucleoporin co 43.6 1.4E+02 0.0031 29.3 8.9 94 795-888 32-140 (141)
291 PF12732 YtxH: YtxH-like prote 43.4 1.1E+02 0.0025 26.4 7.3 28 798-825 24-51 (74)
292 COG2433 Uncharacterized conser 43.3 1.4E+02 0.0031 36.1 10.0 12 258-269 24-35 (652)
293 PF11068 YlqD: YlqD protein; 43.3 1.9E+02 0.0041 28.3 9.4 64 810-877 23-94 (131)
294 PF04111 APG6: Autophagy prote 43.2 1.3E+02 0.0029 33.7 9.7 46 795-840 45-90 (314)
295 PF04762 IKI3: IKI3 family; I 43.1 8.8E+02 0.019 31.6 18.1 48 479-548 592-639 (928)
296 PF04871 Uso1_p115_C: Uso1 / p 42.6 1.3E+02 0.0028 29.5 8.3 32 831-862 80-111 (136)
297 PRK14146 heat shock protein Gr 42.5 1.4E+02 0.003 31.8 9.0 61 802-863 56-116 (215)
298 KOG1003 Actin filament-coating 42.5 75 0.0016 33.0 6.7 80 802-881 111-190 (205)
299 PRK14471 F0F1 ATP synthase sub 42.4 2.1E+02 0.0046 28.6 10.2 6 867-872 134-139 (164)
300 PRK15396 murein lipoprotein; P 42.2 1.4E+02 0.003 26.6 7.5 37 804-840 29-65 (78)
301 TIGR03321 alt_F1F0_F0_B altern 42.0 1.7E+02 0.0038 31.5 10.1 12 839-850 90-101 (246)
302 KOG1900 Nuclear pore complex, 42.0 2.3E+02 0.0051 37.3 12.3 159 364-554 93-278 (1311)
303 PRK10132 hypothetical protein; 41.9 2.7E+02 0.0058 26.3 9.9 50 797-846 9-59 (108)
304 PF06120 Phage_HK97_TLTM: Tail 41.9 1.5E+02 0.0032 33.2 9.5 79 795-873 76-172 (301)
305 PF13851 GAS: Growth-arrest sp 41.9 1.5E+02 0.0032 31.2 9.1 68 797-868 38-105 (201)
306 PF03962 Mnd1: Mnd1 family; I 41.8 1.1E+02 0.0024 31.8 8.1 28 846-873 100-127 (188)
307 COG3883 Uncharacterized protei 41.8 2E+02 0.0042 31.6 10.2 33 805-837 50-82 (265)
308 PF09730 BicD: Microtubule-ass 41.6 1.3E+02 0.0029 37.5 10.0 78 806-883 397-476 (717)
309 PLN02436 cellulose synthase A 41.6 16 0.00035 46.7 2.3 53 599-660 36-91 (1094)
310 PF10498 IFT57: Intra-flagella 41.5 1.2E+02 0.0026 34.8 9.1 45 828-872 266-310 (359)
311 PHA02047 phage lambda Rz1-like 41.5 1.7E+02 0.0037 26.9 8.0 29 813-841 33-61 (101)
312 PF10168 Nup88: Nuclear pore c 41.5 63 0.0014 40.5 7.4 41 796-836 568-608 (717)
313 PRK14140 heat shock protein Gr 41.5 1.8E+02 0.0038 30.4 9.5 58 805-863 42-99 (191)
314 PF06005 DUF904: Protein of un 41.4 81 0.0018 27.5 5.9 17 812-828 9-25 (72)
315 PF07200 Mod_r: Modifier of ru 41.2 1.9E+02 0.0041 28.5 9.5 81 795-875 36-122 (150)
316 PF12329 TMF_DNA_bd: TATA elem 41.1 1.3E+02 0.0029 26.2 7.3 23 816-838 35-57 (74)
317 KOG3433 Protein involved in me 41.0 1.4E+02 0.0031 30.6 8.3 22 849-870 123-144 (203)
318 PF00261 Tropomyosin: Tropomyo 40.9 1.5E+02 0.0033 31.7 9.4 75 795-869 136-210 (237)
319 PF06364 DUF1068: Protein of u 40.9 1.1E+02 0.0024 30.9 7.4 22 838-859 116-137 (176)
320 TIGR02169 SMC_prok_A chromosom 40.8 94 0.002 41.0 9.4 19 29-47 9-29 (1164)
321 PRK14474 F0F1 ATP synthase sub 40.6 1.9E+02 0.0041 31.4 10.1 13 838-850 89-101 (250)
322 PF05667 DUF812: Protein of un 40.6 1.4E+02 0.003 36.6 9.9 50 796-845 317-366 (594)
323 PF10883 DUF2681: Protein of u 40.6 1.3E+02 0.0029 27.2 7.3 50 807-862 30-79 (87)
324 PF00430 ATP-synt_B: ATP synth 40.4 1.2E+02 0.0026 28.8 7.8 24 826-849 56-79 (132)
325 PRK13428 F0F1 ATP synthase sub 40.2 1.6E+02 0.0034 34.9 10.1 15 837-851 84-98 (445)
326 PF13094 CENP-Q: CENP-Q, a CEN 40.0 2.1E+02 0.0046 28.5 9.8 67 802-868 22-88 (160)
327 COG4942 Membrane-bound metallo 39.1 1.2E+02 0.0026 35.3 8.6 9 742-750 125-133 (420)
328 PF07246 Phlebovirus_NSM: Phle 39.1 88 0.0019 34.0 7.0 24 799-822 167-190 (264)
329 PF14915 CCDC144C: CCDC144C pr 39.0 1.6E+02 0.0035 32.6 9.0 97 794-892 138-241 (305)
330 PF08614 ATG16: Autophagy prot 38.9 1.7E+02 0.0038 30.3 9.2 41 797-837 106-146 (194)
331 PF15409 PH_8: Pleckstrin homo 38.9 43 0.00093 30.5 4.0 35 37-71 53-87 (89)
332 KOG0933 Structural maintenance 38.8 1.3E+02 0.0028 38.5 9.1 50 829-878 837-886 (1174)
333 PF06160 EzrA: Septation ring 38.7 98 0.0021 37.7 8.3 25 851-875 189-216 (560)
334 PHA02790 Kelch-like protein; P 38.6 1.9E+02 0.0041 34.4 10.6 189 254-494 263-453 (480)
335 PF07304 SRA1: Steroid recepto 38.5 12 0.00025 37.8 0.3 27 52-78 114-140 (157)
336 COG1382 GimC Prefoldin, chaper 38.4 54 0.0012 31.4 4.7 39 794-832 71-109 (119)
337 COG1198 PriA Primosomal protei 38.4 23 0.00049 44.2 2.8 39 601-656 446-484 (730)
338 PF15294 Leu_zip: Leucine zipp 38.3 1.4E+02 0.0031 32.8 8.5 45 798-842 130-174 (278)
339 KOG2509 Seryl-tRNA synthetase 38.1 1E+02 0.0023 35.8 7.8 21 855-875 102-122 (455)
340 PF13851 GAS: Growth-arrest sp 38.1 2.6E+02 0.0056 29.4 10.3 76 796-871 89-172 (201)
341 PF12128 DUF3584: Protein of u 38.1 1.2E+02 0.0025 40.7 9.5 65 799-863 599-663 (1201)
342 KOG4196 bZIP transcription fac 38.0 67 0.0014 31.1 5.2 39 795-833 76-114 (135)
343 PRK06569 F0F1 ATP synthase sub 37.9 3.2E+02 0.0069 27.6 10.3 19 850-868 97-115 (155)
344 KOG3478 Prefoldin subunit 6, K 37.8 74 0.0016 29.9 5.3 44 795-838 71-114 (120)
345 KOG4552 Vitamin-D-receptor int 37.7 2.1E+02 0.0046 29.9 9.1 39 806-844 66-104 (272)
346 KOG4441 Proteins containing BT 37.7 2.8E+02 0.006 33.9 12.0 54 434-495 474-530 (571)
347 PRK14475 F0F1 ATP synthase sub 37.6 2.6E+02 0.0057 28.2 10.0 11 839-849 95-105 (167)
348 TIGR01144 ATP_synt_b ATP synth 37.6 2.8E+02 0.006 27.1 10.0 51 798-848 24-74 (147)
349 PF01519 DUF16: Protein of unk 37.5 1.3E+02 0.0029 28.0 6.9 45 814-872 53-97 (102)
350 PF07975 C1_4: TFIIH C1-like d 37.5 8.9 0.00019 31.1 -0.5 28 602-629 2-35 (51)
351 PLN02189 cellulose synthase 37.5 18 0.0004 46.1 1.9 54 598-660 33-89 (1040)
352 PF02388 FemAB: FemAB family; 37.5 1.2E+02 0.0025 35.4 8.4 60 796-859 238-297 (406)
353 PRK09343 prefoldin subunit bet 37.5 1.3E+02 0.0028 28.9 7.3 82 799-880 6-109 (121)
354 KOG1962 B-cell receptor-associ 37.4 1.2E+02 0.0027 32.1 7.6 54 798-851 149-205 (216)
355 cd00632 Prefoldin_beta Prefold 37.3 2E+02 0.0044 26.6 8.5 37 805-841 4-40 (105)
356 cd00162 RING RING-finger (Real 37.3 12 0.00026 27.8 0.2 43 602-656 2-44 (45)
357 PF11488 Lge1: Transcriptional 36.8 67 0.0015 28.5 4.9 47 795-841 32-78 (80)
358 KOG0293 WD40 repeat-containing 36.8 5.2E+02 0.011 30.1 12.7 182 303-552 322-517 (519)
359 PF09074 Mer2: Mer2; InterPro 36.8 3.6E+02 0.0079 28.0 10.6 59 805-865 35-93 (190)
360 PF04849 HAP1_N: HAP1 N-termin 36.8 1.7E+02 0.0036 32.8 8.9 79 793-871 160-249 (306)
361 PF08458 PH_2: Plant pleckstri 36.7 60 0.0013 30.7 4.6 35 41-75 71-105 (110)
362 TIGR00219 mreC rod shape-deter 36.5 56 0.0012 36.2 5.3 19 797-815 70-88 (283)
363 PF10073 DUF2312: Uncharacteri 36.4 1E+02 0.0022 27.1 5.6 47 814-860 4-50 (74)
364 PF04899 MbeD_MobD: MbeD/MobD 36.2 62 0.0013 28.1 4.4 39 797-835 32-70 (70)
365 PHA03098 kelch-like protein; P 36.2 4.4E+02 0.0095 31.5 13.4 18 478-496 381-398 (534)
366 COG1730 GIM5 Predicted prefold 36.2 73 0.0016 31.7 5.5 50 789-838 90-139 (145)
367 PF10224 DUF2205: Predicted co 36.1 98 0.0021 27.6 5.7 30 799-828 15-44 (80)
368 KOG4460 Nuclear pore complex, 36.1 2.2E+02 0.0047 34.1 9.9 65 816-880 590-658 (741)
369 PF14634 zf-RING_5: zinc-RING 35.8 14 0.0003 28.6 0.4 42 602-654 2-43 (44)
370 PRK06800 fliH flagellar assemb 35.8 3.5E+02 0.0077 27.9 10.1 100 796-895 41-145 (228)
371 cd01223 PH_Vav Vav pleckstrin 35.7 61 0.0013 30.9 4.6 35 41-75 77-113 (116)
372 PRK09173 F0F1 ATP synthase sub 35.5 2.2E+02 0.0048 28.3 9.1 17 829-845 62-78 (159)
373 KOG1003 Actin filament-coating 35.4 2.4E+02 0.0051 29.5 9.0 32 798-829 51-82 (205)
374 cd01232 PH_TRIO Trio pleckstri 35.4 1.4E+02 0.003 28.4 7.0 38 37-74 71-113 (114)
375 PF01920 Prefoldin_2: Prefoldi 35.3 1.1E+02 0.0025 27.8 6.5 68 805-872 3-92 (106)
376 PRK11448 hsdR type I restricti 35.1 1.7E+02 0.0037 38.8 10.1 18 874-892 231-248 (1123)
377 PRK10884 SH3 domain-containing 35.0 2.1E+02 0.0044 30.3 8.9 19 796-814 96-114 (206)
378 PF07200 Mod_r: Modifier of ru 34.9 1.9E+02 0.0042 28.4 8.5 15 835-849 99-113 (150)
379 smart00503 SynN Syntaxin N-ter 34.8 2.9E+02 0.0063 25.5 9.3 22 801-822 9-30 (117)
380 PRK13454 F0F1 ATP synthase sub 34.8 2.4E+02 0.0053 28.9 9.4 8 840-847 117-124 (181)
381 PF14282 FlxA: FlxA-like prote 34.6 3.3E+02 0.0071 25.5 9.3 43 799-841 18-64 (106)
382 PRK13694 hypothetical protein; 34.6 1.2E+02 0.0026 27.1 5.8 48 813-860 11-58 (83)
383 PRK06746 peptide chain release 34.5 1.2E+02 0.0027 34.1 7.6 71 804-882 15-88 (326)
384 PF13713 BRX_N: Transcription 34.5 41 0.00089 25.8 2.6 27 826-852 3-29 (39)
385 PF07798 DUF1640: Protein of u 34.5 2.8E+02 0.0061 28.3 9.7 27 815-841 74-100 (177)
386 PF04340 DUF484: Protein of un 34.5 1.5E+02 0.0033 31.4 8.1 66 794-867 41-106 (225)
387 COG3883 Uncharacterized protei 34.4 2.3E+02 0.005 31.1 9.3 40 802-841 40-79 (265)
388 PF09726 Macoilin: Transmembra 34.3 1.6E+02 0.0034 36.9 9.2 42 794-835 539-580 (697)
389 PF09744 Jnk-SapK_ap_N: JNK_SA 34.3 1.7E+02 0.0037 29.5 7.9 18 853-870 100-117 (158)
390 PRK14157 heat shock protein Gr 34.1 1.9E+02 0.0042 30.9 8.5 59 804-863 81-139 (227)
391 PF14043 WVELL: WVELL protein 34.0 29 0.00063 30.2 2.0 36 855-890 1-36 (75)
392 PF05384 DegS: Sensor protein 34.0 3.3E+02 0.0072 27.5 9.8 47 794-840 21-67 (159)
393 smart00706 TECPR Beta propelle 33.9 75 0.0016 23.1 4.0 25 296-320 8-33 (35)
394 PRK09039 hypothetical protein; 33.9 2.6E+02 0.0056 31.9 10.2 68 794-863 131-205 (343)
395 PF07889 DUF1664: Protein of u 33.8 3.7E+02 0.0079 26.2 9.6 14 741-754 22-35 (126)
396 PF13870 DUF4201: Domain of un 33.8 2E+02 0.0044 29.2 8.6 61 806-866 62-132 (177)
397 PF10828 DUF2570: Protein of u 33.8 3.4E+02 0.0074 25.5 9.4 30 807-836 25-54 (110)
398 PF13747 DUF4164: Domain of un 33.8 3.1E+02 0.0066 24.9 8.7 52 804-862 36-87 (89)
399 PRK14161 heat shock protein Gr 33.7 2.3E+02 0.005 29.2 8.8 45 800-844 12-56 (178)
400 COG1196 Smc Chromosome segrega 33.7 1.5E+02 0.0033 39.5 9.5 37 29-71 10-52 (1163)
401 PF01486 K-box: K-box region; 33.5 2.9E+02 0.0063 25.3 8.8 65 799-865 11-84 (100)
402 smart00706 TECPR Beta propelle 33.4 62 0.0013 23.5 3.5 25 469-493 8-33 (35)
403 KOG4005 Transcription factor X 33.4 82 0.0018 33.5 5.5 45 795-839 99-143 (292)
404 TIGR01035 hemA glutamyl-tRNA r 33.4 1.1E+02 0.0024 35.7 7.4 76 796-871 313-400 (417)
405 COG1196 Smc Chromosome segrega 33.4 1.5E+02 0.0033 39.5 9.4 31 804-834 825-855 (1163)
406 KOG3335 Predicted coiled-coil 33.4 84 0.0018 32.1 5.4 35 799-833 98-132 (181)
407 PF14931 IFT20: Intraflagellar 33.2 3.6E+02 0.0079 25.9 9.5 76 795-870 22-97 (120)
408 PHA02562 46 endonuclease subun 33.2 2.1E+02 0.0045 34.5 10.1 42 798-839 172-213 (562)
409 TIGR03548 mutarot_permut cycli 33.1 7E+02 0.015 27.5 17.2 17 306-323 116-132 (323)
410 KOG0994 Extracellular matrix g 33.1 2.2E+02 0.0047 37.1 9.7 7 650-656 1162-1168(1758)
411 KOG4552 Vitamin-D-receptor int 33.1 2.1E+02 0.0046 29.9 8.2 42 805-846 72-113 (272)
412 PF07191 zinc-ribbons_6: zinc- 33.0 13 0.00028 32.2 -0.3 23 601-623 3-25 (70)
413 PF15135 UPF0515: Uncharacteri 33.0 37 0.0008 36.3 3.0 35 592-626 125-166 (278)
414 PF15406 PH_6: Pleckstrin homo 33.0 86 0.0019 29.6 5.0 45 13-71 67-111 (112)
415 PRK14562 haloacid dehalogenase 32.9 1.5E+02 0.0032 31.2 7.5 28 850-877 45-72 (204)
416 TIGR01010 BexC_CtrB_KpsE polys 32.9 1.5E+02 0.0033 33.7 8.3 28 848-875 241-268 (362)
417 COG3879 Uncharacterized protei 32.8 1.5E+02 0.0032 32.1 7.4 31 804-834 54-84 (247)
418 cd07623 BAR_SNX1_2 The Bin/Amp 32.8 2.2E+02 0.0047 30.3 8.9 48 804-851 127-186 (224)
419 PF04100 Vps53_N: Vps53-like, 32.6 1.8E+02 0.0039 33.7 8.8 67 797-863 22-92 (383)
420 PLN02943 aminoacyl-tRNA ligase 32.6 78 0.0017 41.1 6.5 67 805-871 887-953 (958)
421 TIGR00019 prfA peptide chain r 32.6 1.1E+02 0.0025 34.9 7.0 69 806-882 39-113 (360)
422 PRK14154 heat shock protein Gr 32.5 1.9E+02 0.0041 30.6 8.1 38 795-832 61-98 (208)
423 PF15035 Rootletin: Ciliary ro 32.4 1E+02 0.0022 31.9 6.0 45 796-840 70-114 (182)
424 COG3599 DivIVA Cell division i 32.4 2.1E+02 0.0045 30.4 8.4 29 796-824 33-61 (212)
425 PF00170 bZIP_1: bZIP transcri 32.3 89 0.0019 26.2 4.7 28 805-832 31-58 (64)
426 PF00435 Spectrin: Spectrin re 32.3 2.9E+02 0.0064 24.0 8.6 56 795-850 36-98 (105)
427 PF07407 Seadorna_VP6: Seadorn 32.2 1.4E+02 0.003 33.3 7.2 23 797-819 36-58 (420)
428 PRK05560 DNA gyrase subunit A; 32.1 1.2E+03 0.026 29.9 22.0 118 250-380 545-672 (805)
429 COG1842 PspA Phage shock prote 32.1 2.1E+02 0.0045 30.6 8.5 55 807-863 45-99 (225)
430 TIGR01843 type_I_hlyD type I s 32.0 2.3E+02 0.0051 32.4 9.9 15 852-866 249-263 (423)
431 TIGR03547 muta_rot_YjhT mutatr 31.9 7.6E+02 0.016 27.5 15.8 16 481-496 315-330 (346)
432 PF05529 Bap31: B-cell recepto 31.9 2.2E+02 0.0047 29.4 8.6 14 856-869 175-188 (192)
433 PF09744 Jnk-SapK_ap_N: JNK_SA 31.9 2.5E+02 0.0055 28.3 8.6 80 796-878 39-118 (158)
434 KOG3564 GTPase-activating prot 31.9 1.9E+02 0.004 34.1 8.4 69 806-874 27-109 (604)
435 PF06156 DUF972: Protein of un 31.9 1.3E+02 0.0027 28.5 6.0 48 795-842 10-57 (107)
436 TIGR03545 conserved hypothetic 31.9 1.9E+02 0.0041 35.2 9.1 12 852-863 243-254 (555)
437 KOG0933 Structural maintenance 31.9 1.9E+02 0.0042 37.0 9.1 67 796-862 825-891 (1174)
438 PF05531 NPV_P10: Nucleopolyhe 31.8 1.5E+02 0.0033 26.1 6.0 19 819-837 40-58 (75)
439 KOG2264 Exostosin EXT1L [Signa 31.8 1.3E+02 0.0028 35.9 7.2 46 796-841 96-141 (907)
440 PF14282 FlxA: FlxA-like prote 31.7 1.9E+02 0.0042 27.0 7.3 57 793-849 19-79 (106)
441 PTZ00419 valyl-tRNA synthetase 31.7 80 0.0017 41.2 6.4 66 805-870 927-992 (995)
442 PF10267 Tmemb_cc2: Predicted 31.6 3.9E+02 0.0083 31.1 11.1 20 796-815 222-241 (395)
443 PF05191 ADK_lid: Adenylate ki 31.6 33 0.00072 25.7 1.7 31 617-659 3-33 (36)
444 KOG0243 Kinesin-like protein [ 31.4 1.9E+02 0.0041 37.4 9.2 47 799-845 447-500 (1041)
445 PRK02119 hypothetical protein; 31.4 2.6E+02 0.0056 24.5 7.5 58 808-872 3-60 (73)
446 PF09726 Macoilin: Transmembra 31.3 1.2E+02 0.0026 37.9 7.5 26 789-814 456-481 (697)
447 KOG0317 Predicted E3 ubiquitin 31.2 13 0.00029 40.4 -0.6 47 600-660 240-286 (293)
448 PRK00591 prfA peptide chain re 31.2 1.3E+02 0.0029 34.3 7.3 70 805-882 37-113 (359)
449 PF04216 FdhE: Protein involve 31.1 17 0.00038 40.2 0.3 76 579-661 177-252 (290)
450 PLN02915 cellulose synthase A 31.1 24 0.00053 45.1 1.5 53 598-659 14-69 (1044)
451 TIGR01554 major_cap_HK97 phage 31.1 2.8E+02 0.006 31.8 10.1 29 805-833 4-32 (378)
452 TIGR00634 recN DNA repair prot 31.0 1.9E+02 0.004 35.3 9.0 18 850-867 373-390 (563)
453 PF13815 Dzip-like_N: Iguana/D 31.0 1.5E+02 0.0032 28.3 6.5 37 798-834 78-114 (118)
454 PF08172 CASP_C: CASP C termin 31.0 97 0.0021 33.6 5.9 48 793-840 86-133 (248)
455 KOG0250 DNA repair protein RAD 30.9 2.2E+02 0.0047 36.9 9.5 70 795-864 736-805 (1074)
456 KOG0612 Rho-associated, coiled 30.9 1.4E+02 0.0029 39.1 7.8 87 795-881 562-648 (1317)
457 PRK10404 hypothetical protein; 30.9 4.4E+02 0.0096 24.5 9.4 66 802-867 7-78 (101)
458 PF04977 DivIC: Septum formati 30.8 1.6E+02 0.0036 25.2 6.4 34 807-840 17-50 (80)
459 PF03908 Sec20: Sec20; InterP 30.8 4E+02 0.0087 24.0 9.6 61 793-864 5-65 (92)
460 KOG1850 Myosin-like coiled-coi 30.6 2.4E+02 0.0053 31.5 8.6 36 796-831 133-168 (391)
461 PF07334 IFP_35_N: Interferon- 30.6 57 0.0012 28.7 3.3 25 795-819 2-26 (76)
462 PRK05729 valS valyl-tRNA synth 30.5 92 0.002 40.1 6.6 27 843-869 847-873 (874)
463 COG1579 Zn-ribbon protein, pos 30.5 2.2E+02 0.0048 30.7 8.4 40 798-837 43-82 (239)
464 PRK10328 DNA binding protein, 30.3 2.5E+02 0.0054 27.6 8.0 9 810-818 12-20 (134)
465 PF10211 Ax_dynein_light: Axon 30.3 4.1E+02 0.0089 27.6 10.2 32 809-840 122-153 (189)
466 PF10482 CtIP_N: Tumour-suppre 30.2 2.2E+02 0.0048 27.0 7.1 27 796-822 3-29 (120)
467 PTZ00446 vacuolar sorting prot 30.1 1.7E+02 0.0038 30.4 7.3 32 801-832 21-52 (191)
468 COG3064 TolA Membrane protein 30.0 2.3E+02 0.005 31.6 8.3 22 836-857 148-169 (387)
469 PF04420 CHD5: CHD5-like prote 29.6 1.2E+02 0.0027 30.5 6.1 42 798-839 38-91 (161)
470 TIGR02977 phageshock_pspA phag 29.6 2.2E+02 0.0047 30.1 8.3 37 800-836 99-135 (219)
471 PRK15365 type III secretion sy 29.6 3.6E+02 0.0078 24.9 8.1 76 795-871 11-95 (107)
472 KOG4797 Transcriptional regula 29.5 1.8E+02 0.0039 27.3 6.3 45 806-866 66-110 (123)
473 PF05911 DUF869: Plant protein 29.4 2.6E+02 0.0056 35.4 9.8 52 815-866 618-669 (769)
474 PRK00846 hypothetical protein; 29.4 3.8E+02 0.0082 23.8 8.1 61 796-856 2-62 (77)
475 PF01166 TSC22: TSC-22/dip/bun 29.3 66 0.0014 26.8 3.2 30 806-835 13-42 (59)
476 PF10422 LRS4: Monopolin compl 29.3 18 0.00039 38.7 0.0 60 801-863 52-111 (249)
477 PLN02195 cellulose synthase A 29.3 28 0.00061 44.3 1.6 51 600-659 7-60 (977)
478 cd01253 PH_beta_spectrin Beta- 29.2 84 0.0018 28.7 4.5 33 39-71 70-103 (104)
479 KOG0161 Myosin class II heavy 29.1 2.2E+02 0.0047 39.6 9.7 38 837-874 994-1031(1930)
480 KOG0646 WD40 repeat protein [G 28.9 1E+03 0.022 28.1 18.2 23 472-494 223-245 (476)
481 PF06632 XRCC4: DNA double-str 28.9 4E+02 0.0087 30.4 10.5 36 806-841 136-171 (342)
482 PF14362 DUF4407: Domain of un 28.9 2.4E+02 0.0053 31.2 8.9 57 815-871 136-204 (301)
483 KOG3470 Beta-tubulin folding c 28.8 3.2E+02 0.0069 25.7 7.8 69 794-863 14-82 (107)
484 PF04841 Vps16_N: Vps16, N-ter 28.8 9.8E+02 0.021 27.8 17.3 25 521-545 217-243 (410)
485 PRK06397 V-type ATP synthase s 28.7 4.4E+02 0.0096 24.4 8.5 64 798-863 15-83 (111)
486 KOG4571 Activating transcripti 28.6 1.2E+02 0.0027 33.4 6.1 42 799-840 247-288 (294)
487 cd00632 Prefoldin_beta Prefold 28.6 1.8E+02 0.0039 26.9 6.6 42 798-839 61-102 (105)
488 PF05667 DUF812: Protein of un 28.6 1.8E+02 0.0038 35.8 8.1 52 818-869 430-481 (594)
489 KOG4360 Uncharacterized coiled 28.5 3E+02 0.0065 32.7 9.4 23 849-871 261-283 (596)
490 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.5 4.2E+02 0.0092 25.6 9.4 35 802-836 12-46 (132)
491 PF04899 MbeD_MobD: MbeD/MobD 28.5 4E+02 0.0086 23.2 8.2 60 810-872 6-65 (70)
492 PF14712 Snapin_Pallidin: Snap 28.5 4.3E+02 0.0092 23.6 8.9 74 798-872 12-87 (92)
493 COG3064 TolA Membrane protein 28.4 2.7E+02 0.0059 31.0 8.6 77 794-870 88-174 (387)
494 COG5490 Uncharacterized conser 28.4 2.2E+02 0.0047 28.2 7.0 66 807-872 88-154 (158)
495 PRK14164 heat shock protein Gr 28.3 2.7E+02 0.0058 29.7 8.4 56 807-863 77-132 (218)
496 KOG1265 Phospholipase C [Lipid 28.3 2.8E+02 0.0061 35.2 9.5 95 796-890 1052-1164(1189)
497 PF05508 Ran-binding: RanGTP-b 28.3 2.1E+02 0.0046 31.9 7.9 74 798-872 36-134 (302)
498 PF15294 Leu_zip: Leucine zipp 28.2 2E+02 0.0044 31.7 7.7 73 795-873 134-225 (278)
499 PTZ00464 SNF-7-like protein; P 28.1 3.9E+02 0.0084 28.3 9.6 64 805-868 16-87 (211)
500 PF13600 DUF4140: N-terminal d 28.1 82 0.0018 29.0 4.2 40 799-838 62-101 (104)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4e-46 Score=409.95 Aligned_cols=362 Identities=28% Similarity=0.471 Sum_probs=291.3
Q ss_pred eecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCC
Q 002614 196 DFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEESG 273 (900)
Q Consensus 196 ~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~ 273 (900)
....-.+||+||.|. .++||.|.+. +.+..|...... ....|++++||+.|+++|+.||.||+||.|..
T Consensus 63 ~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 63 LLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 577889999999998 8999999753 335677777765 56899999999999999999999999999999
Q ss_pred CccCCCCC----------------CcccccEEeee----cCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCC
Q 002614 274 GRLGHGRE----------------ADVSHPQLIEI----LSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHG 333 (900)
Q Consensus 274 GqLG~g~~----------------~~~~~P~~v~~----l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g 333 (900)
|+||.... .....|..|.. ....+|++++||++++++|+++|+||+||.+.- +.++.+
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~--~e~~~g 211 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRC--GELGQG 211 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccc--cccccc
Confidence 99998651 12456777765 223479999999999999999999999999854 555554
Q ss_pred CC--cc----cccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCC-eEE
Q 002614 334 SK--VS----CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGL-RTT 406 (900)
Q Consensus 334 ~~--~~----~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~-~I~ 406 (900)
.. .. ..+|..+. ...|+++++|..|.++||++|++|+||+|.+||||....+....+..+..+... .|.
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 22 22 24454443 457999999999999999999999999999999999877766665555433322 378
Q ss_pred EEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCC----CCcccceeecCCCCCCeeEEEecCcEEE
Q 002614 407 RVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK----EPRLFPECVAPLIDENICQVACGHDLSV 482 (900)
Q Consensus 407 ~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~ht~ 482 (900)
+|+||.+|+++|. ++|++|+||.|-+||||.+.. .....|.....+....|..|++|..|++
T Consensus 288 ~vacG~~h~~al~--------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l 353 (476)
T COG5184 288 YVACGKDHSLALD--------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSL 353 (476)
T ss_pred hcccCcceEEEEc--------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEE
Confidence 9999999999997 899999999999999999821 1234556566666777999999999999
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCC---cceeeecCCcCCCCEEEEEECCCcceeeecCCeEEEEecCCCCCCCCCCCC
Q 002614 483 ALTTSGHVYTMGSAAYGQLGVPVADG---LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKD 559 (900)
Q Consensus 483 aLT~~G~Vy~wG~n~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~G~~~ 559 (900)
+|..+|.||.||.+..||||.+.... ..|..+.. ..++++|+||.+|.++.+.+|+||.||+|.+|+||.|+.+
T Consensus 354 ~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~ 430 (476)
T COG5184 354 ILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKE 430 (476)
T ss_pred EEecCceEEEecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecCchhhhccCCchh
Confidence 99999999999999999999987331 23333221 3569999999999999999999999999999999999865
Q ss_pred C-CCccEEeec--ccCCcEEEEeecCceeEEEE
Q 002614 560 N-RNSPTLVDF--LKDKQVKRVVCGLNFTAIIC 589 (900)
Q Consensus 560 ~-~~~P~~V~~--l~~~~V~~IacG~~~T~aI~ 589 (900)
. ...|+++.. +....++..-||.+++++..
T Consensus 431 ~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 431 ADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred hhccccccccccccCCCceEEeccCcceEEEec
Confidence 5 456788763 66667888888877776654
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.2e-41 Score=348.52 Aligned_cols=361 Identities=24% Similarity=0.450 Sum_probs=303.1
Q ss_pred CCCcEEEEcCCCCCcccCCCCCccccccccccccccceeecccCCCCEEEEEeCC--cEEEEEEcCCcEEEEeCCCCCcc
Q 002614 199 SLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA--RHAVLVTKQGEIFSWGEESGGRL 276 (900)
Q Consensus 199 s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~--~ht~~Lt~dG~Vy~wG~n~~GqL 276 (900)
.-|++...|... ..+.|.-+.. ...+...|.++..+.+.+|..|+.|- -|+++|+-+|+.|+||.|..|||
T Consensus 18 ~~g~ml~~g~v~-wd~tgkRd~~------~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQL 90 (443)
T KOG1427|consen 18 KGGEMLFCGAVA-WDITGKRDGA------MEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQL 90 (443)
T ss_pred CCccEEEeccch-hhhhcccccc------cccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCcc
Confidence 457788888766 4455543221 11356789999999999999999875 89999999999999999999999
Q ss_pred CCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcc-cccceeeccCCCCCcEEE
Q 002614 277 GHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVS-CWIPRKVSGNLDGIHLSY 355 (900)
Q Consensus 277 G~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~-~~~P~~V~~~l~~~~I~~ 355 (900)
|+++......|+.|..|...+|++.+||++|+++||++|.+|.+|.|.+ ||||.++... ...|..+ ...+..|+.
T Consensus 91 GhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~--GQlGlgn~~~~v~s~~~~--~~~~~~v~~ 166 (443)
T KOG1427|consen 91 GHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKY--GQLGLGNAKNEVESTPLP--CVVSDEVTN 166 (443)
T ss_pred CccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccc--ccccccccccccccCCCc--cccCcccee
Confidence 9999889999999999999999999999999999999999999999955 9999998643 2222222 123457999
Q ss_pred EEecCceEEEEecCCeEEEEecCCCCCCCCCCCC--------------CCCcceeeeecCCCeEEEEEecCceEEEEEEc
Q 002614 356 ISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI--------------STSIPREVETLRGLRTTRVSCGVWHTAAVVVA 421 (900)
Q Consensus 356 VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~--------------~~~~P~~V~~l~~~~I~~IacG~~hs~al~~~ 421 (900)
|+||..+++.|+..+.+.++|...||||||+... ....|..|..+.++.|++++||.+||+++.
T Consensus 167 v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd-- 244 (443)
T KOG1427|consen 167 VACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD-- 244 (443)
T ss_pred eccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec--
Confidence 9999999999999999999999999999998543 234677888899999999999999999997
Q ss_pred cCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCC--CCCeeEEEecCcEEEEEecCCcEEEEeCCCCC
Q 002614 422 TDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLI--DENICQVACGHDLSVALTTSGHVYTMGSAAYG 499 (900)
Q Consensus 422 ~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~--~~~I~~Ia~G~~ht~aLT~~G~Vy~wG~n~~G 499 (900)
++++||+||-+.||+|||...++...|.++..+. +..-.++.||+..++++.+-|.+|.||.+..
T Consensus 245 ------------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~- 311 (443)
T KOG1427|consen 245 ------------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN- 311 (443)
T ss_pred ------------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-
Confidence 8999999999999999999999999999887553 3446789999999999999999999997753
Q ss_pred CCCCCCCCCcceeeecCCcCCCCEEEEEECCCcceeeecCCeEEEEecCCCCCCCCCC--CCCCCccEEeecccCCcEEE
Q 002614 500 QLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGD--KDNRNSPTLVDFLKDKQVKR 577 (900)
Q Consensus 500 QLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~ 577 (900)
...+..+|..+. .+.+.++..|-||..|.++ ..|.....||...+|.++-|. ......|..|+.+.+.+|..
T Consensus 312 ----~ge~~mypkP~~-dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~ 385 (443)
T KOG1427|consen 312 ----NGEDWMYPKPMM-DLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMG 385 (443)
T ss_pred ----CcccccCCCchh-hcCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccc
Confidence 234556787777 4788999999999999875 567779999998877766554 34556799999999999999
Q ss_pred EeecCceeEEEEec
Q 002614 578 VVCGLNFTAIICLH 591 (900)
Q Consensus 578 IacG~~~T~aI~~~ 591 (900)
|+||..||++|+..
T Consensus 386 VamGysHs~vivd~ 399 (443)
T KOG1427|consen 386 VAMGYSHSMVIVDR 399 (443)
T ss_pred eeeccceEEEEEcc
Confidence 99999999999843
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7e-40 Score=360.74 Aligned_cols=340 Identities=26% Similarity=0.452 Sum_probs=274.7
Q ss_pred eeeccceeeeccCCceeEeecCCCcEEEEcCCCCCcccCCCCCc-------cccccccccccccceeecc----cCCCCE
Q 002614 178 RISLSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHR-------VGYSFSRQTDALLPKAVES----TMALDV 246 (900)
Q Consensus 178 r~~~s~~vs~~s~g~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~-------~~~~~~~~~~~~~P~~v~~----~~~~~I 246 (900)
+++...++....||.|..+++.||+||+||.|. .|+||...+. ....+........|..++. ...++|
T Consensus 100 ~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~-~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~v 178 (476)
T COG5184 100 RIDKASIIKIACGGNHSLGLDHDGNLYSWGDND-DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRV 178 (476)
T ss_pred cccceeeEEeecCCceEEeecCCCCEEEeccCc-ccccccccccccccccccccccchhhcccCCceeeccccccCChhe
Confidence 567788999999999999999999999999999 9999976520 1111222334567777765 335589
Q ss_pred EEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccc----cEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcC
Q 002614 247 HNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSH----PQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD 322 (900)
Q Consensus 247 ~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~----P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~ 322 (900)
++++||++++++|+++|+||.||....+-++.+..++... ++++... ...|+++++|..|.++||.+|++|+||+
T Consensus 179 v~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs 257 (476)
T COG5184 179 VKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGS 257 (476)
T ss_pred EEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecC
Confidence 9999999999999999999999998888888775444333 4444333 4689999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCC----CCCCcceeee
Q 002614 323 GTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDH----ISTSIPREVE 398 (900)
Q Consensus 323 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~----~~~~~P~~V~ 398 (900)
|.. ||||.........+..+..++.-..|+.|+||.+|+++|+++|+||+||.|-|||||.+.. .....|+...
T Consensus 258 ~qk--gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~ 335 (476)
T COG5184 258 NQK--GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQ 335 (476)
T ss_pred Ccc--cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccc
Confidence 955 9999998877666666665555556899999999999999999999999999999999822 2245677777
Q ss_pred ecCCCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCC--CCCcccceeecCCCCCCeeEEEe
Q 002614 399 TLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGD--KEPRLFPECVAPLIDENICQVAC 476 (900)
Q Consensus 399 ~l~~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~--~~~~~~P~~V~~l~~~~I~~Ia~ 476 (900)
.+.+..|..|++|..|+++|. .+|.||+||.++.+|||... ......|+.+. ...++.+|+|
T Consensus 336 ~~~~~~i~~is~ge~H~l~L~--------------~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls--~~~~~~~v~~ 399 (476)
T COG5184 336 LLSGVTICSISAGESHSLILR--------------KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS--VAIKLEQVAC 399 (476)
T ss_pred cCCCceEEEEecCcceEEEEe--------------cCceEEEecCCccccccCcccceeecCCccccc--cccceEEEEe
Confidence 778888999999999999998 88999999999999999998 44455555554 3467999999
Q ss_pred cCcEEEEEecCCcEEEEeCCCCCCCCCCCCC--CcceeeecC-CcCCCCEEEEEECCCcceeee
Q 002614 477 GHDLSVALTTSGHVYTMGSAAYGQLGVPVAD--GLVPTRVDG-EIAESFVEEVACGAYHVAALT 537 (900)
Q Consensus 477 G~~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~--~~~P~~v~~-~l~~~~V~~Ia~G~~Ht~aLt 537 (900)
|..|+++.+.+|.||.||.+++|+||++... ...|..+.. .+....++..-||....++..
T Consensus 400 gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 400 GTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred cCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 9999999999999999999999999987644 345666654 245667777778877777654
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.2e-36 Score=314.80 Aligned_cols=312 Identities=25% Similarity=0.453 Sum_probs=262.0
Q ss_pred ceeEeecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCC
Q 002614 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEE 271 (900)
Q Consensus 192 ~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n 271 (900)
.|..+|+-+|+.|.||.|. .||||+++. .....|+.|+.+...+|++-+||.+|+++||++|.||.||+|
T Consensus 68 aH~vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN 137 (443)
T KOG1427|consen 68 AHCVLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN 137 (443)
T ss_pred hhEEEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc
Confidence 3556999999999999999 899999964 456789999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCc-ccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcc-------------
Q 002614 272 SGGRLGHGREAD-VSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVS------------- 337 (900)
Q Consensus 272 ~~GqLG~g~~~~-~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~------------- 337 (900)
.+||||.|.... +..|.++. ..+..|..|+||..+++.|+..+.|.++|.-.| |||||++...
T Consensus 138 K~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp~y--gqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 138 KYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLPQY--GQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred ccccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCccc--cccccCcchhhccccccceeeee
Confidence 999999998654 33333333 334579999999999999999999999999965 9999998643
Q ss_pred -cccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecC--CCeEEEEEecCce
Q 002614 338 -CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR--GLRTTRVSCGVWH 414 (900)
Q Consensus 338 -~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~IacG~~h 414 (900)
+..|..|. ++++++|++++||.+|+++++++++||+||.+.||.|||....+...|+.++.+. +.--.++.||+..
T Consensus 215 ~~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 215 AQPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred cCCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 33455554 5788999999999999999999999999999999999999999999999888653 4456788999999
Q ss_pred EEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEecCcEEEEEecCCcEEEEe
Q 002614 415 TAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMG 494 (900)
Q Consensus 415 s~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~~G~Vy~wG 494 (900)
++.+. +-|.||.||.+.. +.+....|..+..+.+.++..+-||..|.++ ..+.....||
T Consensus 294 Sl~v~--------------e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg 352 (443)
T KOG1427|consen 294 SLNVA--------------EGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWG 352 (443)
T ss_pred ceeec--------------ccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccc
Confidence 99887 7899999998764 3455677888888899999999999988655 5566899999
Q ss_pred CCCCCCCCC-CCC--CCcceeeecCCcCCCCEEEEEECCCcceeeecC
Q 002614 495 SAAYGQLGV-PVA--DGLVPTRVDGEIAESFVEEVACGAYHVAALTST 539 (900)
Q Consensus 495 ~n~~GQLG~-~~~--~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~ 539 (900)
...+|.++. ++. ....|..+. .+.+.+|.+|++|..|+++|..+
T Consensus 353 ~~~~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 353 HAQYGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 988877654 332 345677776 57888999999999999999754
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=4.1e-26 Score=260.45 Aligned_cols=305 Identities=22% Similarity=0.331 Sum_probs=231.8
Q ss_pred EeecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCC
Q 002614 195 EDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEES 272 (900)
Q Consensus 195 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~ 272 (900)
.+.|...|||+||.|. +..||.|+. .....|..+..+ .+.-+.+|+.+..|++++++.|+||++|.+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 4577889999999999 899999875 345667777654 3455788999999999999999999999999
Q ss_pred CCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCc-ccccceeeccC-CCC
Q 002614 273 GGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKV-SCWIPRKVSGN-LDG 350 (900)
Q Consensus 273 ~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~-~~~~P~~V~~~-l~~ 350 (900)
+|+||+|+......|++|+.|.+.+|.+|+....|+++||.+|-||+||.|.+ +|||..+.. ....|.+|... +.+
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~--hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGS--HQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcc--cccCCcCchhhcCchhhhhhHhhcc
Confidence 99999999989999999999999999999999999999999999999999955 999987764 33445554321 122
Q ss_pred -CcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCC-CCCcceeeeecCCCeEEEEEecCceEEEEEEccCCCCCC
Q 002614 351 -IHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-STSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSS 428 (900)
Q Consensus 351 -~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~-~~~~P~~V~~l~~~~I~~IacG~~hs~al~~~~~~~~~~ 428 (900)
..|+.|++|..|+++.|+. .||+||.| .||||..+.. .+..|+.+.. ....|..|+|....|++++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~--------- 351 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLL--------- 351 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEe---------
Confidence 3799999999999999987 69999987 5999987654 4567866643 2347899999999999998
Q ss_pred CCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeec----CCCCCCeeEEEecCcEEEEEecCCcEEEEeCCCCCCCCCC
Q 002614 429 PSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVA----PLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVP 504 (900)
Q Consensus 429 ~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~----~l~~~~I~~Ia~G~~ht~aLT~~G~Vy~wG~n~~GQLG~~ 504 (900)
.++.+|++-+-..-.+.. ......-..|. .+.-.++.+..+.....++||+-|+||.|-++..-.-
T Consensus 352 -----~~~~i~~~ady~~~k~~~--n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~--- 421 (1267)
T KOG0783|consen 352 -----QNNSIIAFADYNQVKLPF--NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT--- 421 (1267)
T ss_pred -----cCCcEEEEecccceecCc--chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee---
Confidence 789999886543322211 11111111111 1112346667777788899999999999997642111
Q ss_pred CCCCcceeeecCCcCCCCEEEEEECCCcceeeecCC
Q 002614 505 VADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540 (900)
Q Consensus 505 ~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (900)
.-...|.++ ..|.+|+--.+..+++|.||
T Consensus 422 -~c~ftp~r~------~~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 422 -SCKFTPLRI------FEISDIAWTANSLILCTRDG 450 (1267)
T ss_pred -eeeccccee------eehhhhhhccceEEEEecCc
Confidence 111233333 34778888889999999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=5.2e-26 Score=259.58 Aligned_cols=303 Identities=21% Similarity=0.381 Sum_probs=233.3
Q ss_pred EEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecC--CCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCC
Q 002614 258 LVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS--GVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSK 335 (900)
Q Consensus 258 ~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~ 335 (900)
+++...+||+||.|.+..||+|...+...|..|..+. +.-+.+|+.+.+|++++++.|+||++|.+ ..|.||+|+.
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 4566799999999999999999999999999998775 44578999999999999999999999999 5699999999
Q ss_pred cccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCC-CCCcceeeeec--CCC-eEEEEEec
Q 002614 336 VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-STSIPREVETL--RGL-RTTRVSCG 411 (900)
Q Consensus 336 ~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~-~~~~P~~V~~l--~~~-~I~~IacG 411 (900)
.....|++|++ +.+.+|.+|+....|+++||.+|-||+||.|.++|||..+.. ....|++|... .+. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999997 788899999999999999999999999999999999987543 45567776643 233 68999999
Q ss_pred CceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC-cccceeecCCCCCCeeEEEecCcEEEEEecCCcE
Q 002614 412 VWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP-RLFPECVAPLIDENICQVACGHDLSVALTTSGHV 490 (900)
Q Consensus 412 ~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~~G~V 490 (900)
..|+++.+ +..||+||.|. ||||..+... ..+|..+.. ....|..|+|....|++++++|.+
T Consensus 294 ~~hsVawt---------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i 356 (1267)
T KOG0783|consen 294 KSHSVAWT---------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSI 356 (1267)
T ss_pred cceeeeee---------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcE
Confidence 99999994 67899999986 9999876544 566755532 457799999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcceeeecC-C--cCCCCEEEEEECCCcceeeecCCeEEEEecCCCCCCCCCCCCCCCccEEe
Q 002614 491 YTMGSAAYGQLGVPVADGLVPTRVDG-E--IAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLV 567 (900)
Q Consensus 491 y~wG~n~~GQLG~~~~~~~~P~~v~~-~--l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQLG~G~~~~~~~P~~V 567 (900)
|++-.-..-.+.....+.+ -..|.+ . +....+++..+...-.++||+-|+||.|-.+..-. +.-..+|..+
T Consensus 357 ~~~ady~~~k~~~n~~~lk-s~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~ 430 (1267)
T KOG0783|consen 357 IAFADYNQVKLPFNVDFLK-SLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRI 430 (1267)
T ss_pred EEEecccceecCcchhccc-eeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeeccccee
Confidence 9988544333332222221 222222 1 22244667777778889999999999998654110 1112234333
Q ss_pred ecccCCcEEEEeecCceeEEEEec
Q 002614 568 DFLKDKQVKRVVCGLNFTAIICLH 591 (900)
Q Consensus 568 ~~l~~~~V~~IacG~~~T~aI~~~ 591 (900)
- .|.+|+--.+.-++++.+
T Consensus 431 ~-----~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 431 F-----EISDIAWTANSLILCTRD 449 (1267)
T ss_pred e-----ehhhhhhccceEEEEecC
Confidence 2 345666666666666654
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.9e-20 Score=219.61 Aligned_cols=269 Identities=27% Similarity=0.405 Sum_probs=190.3
Q ss_pred ecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeecccCCCCEEEEEeCCcEEEEEEc--CCcEEEEeCCCCC
Q 002614 197 FDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTK--QGEIFSWGEESGG 274 (900)
Q Consensus 197 l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~--dG~Vy~wG~n~~G 274 (900)
-..+|+||.-|.....|..-.|+ .+ ....+| .+|++|+.|-....++.- +|-++.-|+. -
T Consensus 494 qa~sGKvYYaGn~t~~Gl~e~G~-----nW---mEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~--k 555 (3738)
T KOG1428|consen 494 QARSGKVYYAGNGTRFGLFETGN-----NW---MELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDK--K 555 (3738)
T ss_pred hhcCccEEEecCccEEeEEccCC-----ce---EEecCC--------CceEEEEeccchhheeeccCcceEEeccCc--c
Confidence 36789999999866334333332 11 222222 479999999876666654 4555555432 1
Q ss_pred ccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcccccceeeccCCCCCcEE
Q 002614 275 RLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLS 354 (900)
Q Consensus 275 qLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~ 354 (900)
..|. -++...-...+|+.|.+...---.++++|++|..|..+- ........+ ..+++.-|.
T Consensus 556 ~~~~--------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm----------~~n~SSqml-n~L~~~~is 616 (3738)
T KOG1428|consen 556 RNGR--------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM----------RVNVSSQML-NGLDNVMIS 616 (3738)
T ss_pred cccc--------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE----------EecchHHHh-hccccceee
Confidence 1111 111222233467776544333346889999999986632 000111222 347788899
Q ss_pred EEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCC-------------------------------------------
Q 002614 355 YISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIST------------------------------------------- 391 (900)
Q Consensus 355 ~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~------------------------------------------- 391 (900)
+++.|..|+++++.+|.||+||.|+.||+|.-.....
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 9999999999999999999999999999995111000
Q ss_pred --------------------------------------------------------Ccceeee---ecCCCeEEEEEecC
Q 002614 392 --------------------------------------------------------SIPREVE---TLRGLRTTRVSCGV 412 (900)
Q Consensus 392 --------------------------------------------------------~~P~~V~---~l~~~~I~~IacG~ 412 (900)
..|..|. ..-++++.+|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 0111111 11235899999999
Q ss_pred ceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEecCcEEEEEecCCcEEE
Q 002614 413 WHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYT 492 (900)
Q Consensus 413 ~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~~G~Vy~ 492 (900)
+|+++|. ++++||++|.|.+||||+|+...+..|+.|..+.+..|++|++|.+||+++..||.||+
T Consensus 777 ~HtVlL~--------------sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFT 842 (3738)
T KOG1428|consen 777 FHTVLLA--------------SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFT 842 (3738)
T ss_pred ceEEEEe--------------cCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEE
Confidence 9999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCC----cceeeecC
Q 002614 493 MGSAAYGQLGVPVADG----LVPTRVDG 516 (900)
Q Consensus 493 wG~n~~GQLG~~~~~~----~~P~~v~~ 516 (900)
+|.-..||||.|..+. ..|.++.+
T Consensus 843 FGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 843 FGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred eccccCccccCccccccccccCCCcCCC
Confidence 9999999999876543 34555553
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3e-19 Score=209.85 Aligned_cols=304 Identities=20% Similarity=0.278 Sum_probs=212.5
Q ss_pred CCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEe--CCcEEEEc
Q 002614 244 LDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTR--SGDLYTWG 321 (900)
Q Consensus 244 ~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~--dG~VyswG 321 (900)
..-+++-.+...+++-+.+|+||.-|... .+|.-.... .-++..-..+|++|+.|-..+.++.- +|-++.-|
T Consensus 479 ~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~----nWmEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~ 552 (3738)
T KOG1428|consen 479 PQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGN----NWMELCLPEPIVQISVGIDTIMFRSGAGHGWIASVD 552 (3738)
T ss_pred chheecccchhhhhhhhcCccEEEecCcc--EEeEEccCC----ceEEecCCCceEEEEeccchhheeeccCcceEEecc
Confidence 34566778888899999999999999753 334322211 11221112589999999887777664 55566655
Q ss_pred CCCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecC
Q 002614 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR 401 (900)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 401 (900)
+... .|.+ . +.+ +....+|+.|.+...---.+.++|++|.+|....-. ...-..+..+.
T Consensus 553 D~k~-~~~~------R----r~~--P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~~--------n~SSqmln~L~ 611 (3738)
T KOG1428|consen 553 DKKR-NGRL------R----RLV--PSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMRV--------NVSSQMLNGLD 611 (3738)
T ss_pred Cccc-ccch------h----hcC--CCCcceeEEEeeeeEEEEEEccCCeEEeecceeEEe--------cchHHHhhccc
Confidence 5421 1110 1 111 344567888765554455778999999999543211 11233456777
Q ss_pred CCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC-------------c-----------
Q 002614 402 GLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP-------------R----------- 457 (900)
Q Consensus 402 ~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~-------------~----------- 457 (900)
+.-|.+++.|..|+++++ .+|.||+||-|+.+|+|.-.... .
T Consensus 612 ~~~isslAlGKsH~~av~--------------rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~ 677 (3738)
T KOG1428|consen 612 NVMISSLALGKSHGVAVT--------------RNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLT 677 (3738)
T ss_pred cceeehhhccccceeEEE--------------eCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeec
Confidence 888999999999999998 89999999999999988521100 0
Q ss_pred ---------------------------------------------------------------------------cccee
Q 002614 458 ---------------------------------------------------------------------------LFPEC 462 (900)
Q Consensus 458 ---------------------------------------------------------------------------~~P~~ 462 (900)
+-|..
T Consensus 678 dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~ 757 (3738)
T KOG1428|consen 678 DTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSR 757 (3738)
T ss_pred CCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchh
Confidence 00000
Q ss_pred ec---CCCCCCeeEEEecCcEEEEEecCCcEEEEeCCCCCCCCCCCCC-CcceeeecCCcCCCCEEEEEECCCcceeeec
Q 002614 463 VA---PLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD-GLVPTRVDGEIAESFVEEVACGAYHVAALTS 538 (900)
Q Consensus 463 V~---~l~~~~I~~Ia~G~~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~ 538 (900)
|. ..-+.++.+|+||..|+++|.+|++||++|+|.+||||.+... ...|+.|. .+.+..+++|++|.+|++++..
T Consensus 758 V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~-~~~~t~~vQVaAGSNHT~l~~~ 836 (3738)
T KOG1428|consen 758 VILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVI-LPSDTVIVQVAAGSNHTILRAN 836 (3738)
T ss_pred eeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEE-cCCCCceEEEecCCCceEEEec
Confidence 00 0113468899999999999999999999999999999998765 45788887 4677789999999999999999
Q ss_pred CCeEEEEecCCCCCCCCCCCCC---CCccEEeeccc---CCcEEEEeecCceeEEEE
Q 002614 539 TSKVYTWGKGANGQLGHGDKDN---RNSPTLVDFLK---DKQVKRVVCGLNFTAIIC 589 (900)
Q Consensus 539 ~G~Vy~WG~n~~GQLG~G~~~~---~~~P~~V~~l~---~~~V~~IacG~~~T~aI~ 589 (900)
||+||+||.=..||||..--+. ...|.+|..+. +....+|.+-++.|++-.
T Consensus 837 DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~~ 893 (3738)
T KOG1428|consen 837 DGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIHS 893 (3738)
T ss_pred CCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceeeh
Confidence 9999999999999999754332 24588887553 345677877777666543
No 9
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.38 E-value=3.2e-13 Score=128.07 Aligned_cols=71 Identities=25% Similarity=0.572 Sum_probs=62.8
Q ss_pred eEEEeCCC--cceeeccceeeeccCccCcccccCCCC----CCCCceEEEEEc----CCCceeeeCCHHHHHHHHHHHHH
Q 002614 2 LIWYSGKE--ERQLKLNQVSRIIPGQRTATFQRYPRP----EKEYQSFSLIYN----DRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 2 l~w~~~~~--~k~~~~~~i~~v~~G~~t~~f~~~~~~----~~~~~~fsii~~----~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|+|.+.++ .+.|.|++|++||.|+.++.|+++... ..+++||||||+ .++|||||.|++||+.|+.||++
T Consensus 35 l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 35 LYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 78998775 445999999999999999999998654 489999999993 35999999999999999999998
Q ss_pred H
Q 002614 72 L 72 (900)
Q Consensus 72 l 72 (900)
|
T Consensus 115 L 115 (115)
T cd01248 115 L 115 (115)
T ss_pred C
Confidence 6
No 10
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.25 E-value=1.6e-12 Score=96.73 Aligned_cols=33 Identities=45% Similarity=0.447 Sum_probs=29.8
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhhhccCCCCcc
Q 002614 845 EDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQD 877 (900)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 877 (900)
+|||+|||||||||||||+|||+|++|||+..+
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~~~ 33 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGAYR 33 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 489999999999999999999999999985443
No 11
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.13 E-value=5e-11 Score=95.98 Aligned_cols=50 Identities=40% Similarity=0.785 Sum_probs=47.6
Q ss_pred CCeEEEEecCCCCCCC-CCCCCCCCccEEeecccCCcEEEEeecCceeEEE
Q 002614 539 TSKVYTWGKGANGQLG-HGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAII 588 (900)
Q Consensus 539 ~G~Vy~WG~n~~GQLG-~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~aI 588 (900)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888889999999999999999999999999986
No 12
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.13 E-value=5.8e-12 Score=108.33 Aligned_cols=68 Identities=38% Similarity=0.886 Sum_probs=47.4
Q ss_pred cccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccc
Q 002614 591 HKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (900)
Q Consensus 591 ~k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~ 658 (900)
+.|+++.+...|..|+..|++++++|||+.||.+||..|++.+...+.......++.|||+.||+.|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 35889999999999999999999999999999999999999888766333346789999999999875
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.3e-12 Score=153.06 Aligned_cols=191 Identities=31% Similarity=0.524 Sum_probs=150.8
Q ss_pred cceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEe
Q 002614 234 LPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTR 313 (900)
Q Consensus 234 ~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~ 313 (900)
.|..+..+...+|.+++||.+|..+++..|++|+||.|.+||+|++....-..|.+++.+.+.+..+|++|..|+++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 34455555566899999999999999999999999999999999995554444999999999999999999999998875
Q ss_pred CCcEEEEcCCCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCc
Q 002614 314 SGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSI 393 (900)
Q Consensus 314 dG~VyswG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~ 393 (900)
|++++|.+|.++++|....||+||+-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999987777788
Q ss_pred ceeeeecCCCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeec---CCCCCC
Q 002614 394 PREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVA---PLIDEN 470 (900)
Q Consensus 394 P~~V~~l~~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~---~l~~~~ 470 (900)
|..+..+.+..+.+|+||..|++++. ..-|++|..|.+..|. +.-.....+.... .-....
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v-------------~~l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~ 179 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIV-------------PRLGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHR 179 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhh-------------hhhcceeecccCCCCC---ceeeccchhhhcccccHHHHHH
Confidence 88888888889999999999999987 2669999999988771 0000000110000 001233
Q ss_pred eeEEEecCcEEEEEecCC
Q 002614 471 ICQVACGHDLSVALTTSG 488 (900)
Q Consensus 471 I~~Ia~G~~ht~aLT~~G 488 (900)
+..+..|.+.++.|...+
T Consensus 180 ~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 180 CSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHHhcCCCceEEEEeec
Confidence 556788888888876654
No 14
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.99 E-value=5.3e-10 Score=89.98 Aligned_cols=50 Identities=44% Similarity=0.828 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCCccC-CCCCCcccccEEeeecCCCcEEEEEecCcEEEEE
Q 002614 262 QGEIFSWGEESGGRLG-HGREADVSHPQLIEILSGVNVELVACGEYHTCAV 311 (900)
Q Consensus 262 dG~Vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aL 311 (900)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 8888889999999999999999999999999987
No 15
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-10 Score=136.10 Aligned_cols=91 Identities=26% Similarity=0.524 Sum_probs=76.8
Q ss_pred cce-eeccceeeeccCccCcccccCCCCCCCCceEEEEEcC--CCceeeeCCHHHHHHHHHHHHHHHhcCCCCccccccc
Q 002614 10 ERQ-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND--RSLDLICKDKDEAEVWLVGLKALITRGTHSKWKLGTI 86 (900)
Q Consensus 10 ~k~-~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~--~sLdLi~~~~~ea~~W~~gl~~l~~~~~~~~~~~~~~ 86 (900)
+|+ ++|++|++||.|++|+.||+..+..++++||||||++ .+|||||.++|+|+.||+||++|++.....+
T Consensus 56 ~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~------ 129 (746)
T KOG0169|consen 56 NKAKVSISEIEEVRSGKQTENLRSLARDLPEDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMR------ 129 (746)
T ss_pred hhcccchhhhHHHhccccchhhHHHHHhcCcceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhh------
Confidence 444 9999999999999999999999999999999999943 5999999999999999999999999866322
Q ss_pred cCCCCCCCcccccccCCCCccCcccCCCcc
Q 002614 87 NCSTSSDSPRARIRKTSPTVTPFDFGDIQG 116 (900)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (900)
.. .++..|+.+.|..+|...
T Consensus 130 ~~----------~~~~~wi~~~~~~ad~~~ 149 (746)
T KOG0169|consen 130 QR----------SRREHWIHSIFQEADKNK 149 (746)
T ss_pred hc----------chHHHHHHHHHHHHcccc
Confidence 11 456678777777776443
No 17
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.2e-10 Score=133.04 Aligned_cols=64 Identities=41% Similarity=0.950 Sum_probs=59.2
Q ss_pred cCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccccc
Q 002614 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (900)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 662 (900)
.|...|..|...|+++.++|||++||.+||..|+++.+.+|.++ +.+++|||+.||+.|.+...
T Consensus 163 ~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~G--i~~~VRVCd~C~E~l~~~s~ 226 (634)
T KOG1818|consen 163 IDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLG--IEKPVRVCDSCYELLTRASV 226 (634)
T ss_pred ccccccceeeeeeeeccccccccccchhhccCccccccCccccc--ccccceehhhhHHHhhhccc
Confidence 56778999999999999999999999999999999999999998 67999999999999988644
No 18
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.87 E-value=3.3e-10 Score=122.32 Aligned_cols=67 Identities=37% Similarity=0.857 Sum_probs=60.4
Q ss_pred ecccccccCccccCCCCC-CCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 590 LHKWVSSVDHSVCSSCHN-PFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 590 ~~k~vs~~d~s~C~~C~~-~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
.+-|+++.+.+.|+.|+. .|++..+||||++||.+||..|+.++...+.+ .+++.|||+.||+.|.+
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~---~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL---STKPIRVCDICFEELEK 226 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc---CCCCceecHHHHHHHhc
Confidence 456999999999999999 99999999999999999999999998666544 47899999999999987
No 19
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.9e-11 Score=140.21 Aligned_cols=182 Identities=27% Similarity=0.427 Sum_probs=142.4
Q ss_pred CCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCCeEEEEEecCceEEEEEEccCCCCC
Q 002614 348 LDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSS 427 (900)
Q Consensus 348 l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~hs~al~~~~~~~~~ 427 (900)
+.-.+|.+++||.+|+++++..|.+|+||.|.+||+|++.......|..++.+.|....+|++|..|++++. .
T Consensus 11 l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS-------~ 83 (850)
T KOG0941|consen 11 LNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS-------S 83 (850)
T ss_pred HhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh-------h
Confidence 334579999999999999999999999999999999999554444599999999999999999999999985 1
Q ss_pred CCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEecCcEEEEEec-CCcEEEEeCCCCC--CCCCC
Q 002614 428 SPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTT-SGHVYTMGSAAYG--QLGVP 504 (900)
Q Consensus 428 ~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~-~G~Vy~wG~n~~G--QLG~~ 504 (900)
.+..++..|.+|++|....||+|+........|..+..+.+..+..|+||..|+++.-. -|++|..|.+..| ++-..
T Consensus 84 ~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~ 163 (850)
T KOG0941|consen 84 HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSL 163 (850)
T ss_pred chhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeecc
Confidence 44556689999999999999999988888888999988889999999999999988754 5899999998877 11000
Q ss_pred CCCCcceeeec--CCcCCCCEEEEEECCCcceeeecCC
Q 002614 505 VADGLVPTRVD--GEIAESFVEEVACGAYHVAALTSTS 540 (900)
Q Consensus 505 ~~~~~~P~~v~--~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (900)
. .+.... +.-....+..+..|.+.+..|...+
T Consensus 164 s----~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 164 S----GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred c----hhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 0 000000 0011123556778888887765444
No 20
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=98.85 E-value=4.2e-09 Score=101.11 Aligned_cols=70 Identities=24% Similarity=0.508 Sum_probs=56.3
Q ss_pred CeEEEeCCC---------cceeeccceeeeccCccCcccccCCCCCCCCceEEEEE--cCCCceeeeCCHHHHHHHHHHH
Q 002614 1 MLIWYSGKE---------ERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY--NDRSLDLICKDKDEAEVWLVGL 69 (900)
Q Consensus 1 ~l~w~~~~~---------~k~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~--~~~sLdLi~~~~~ea~~W~~gl 69 (900)
+|+|.+.++ .+.+.|.+|.+|..|..++.|. .. ++.+|||++ ++|+|||+|.+++++++|++||
T Consensus 43 ~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~---~~--~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL 117 (123)
T PF12814_consen 43 TLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGL---KK--PDHNKSIIIVTPDRSLDLTAPSRERHEIWFNAL 117 (123)
T ss_pred EEEecCCCCCccccccccccceEEeeeEEecCCCCCCccc---cc--cccceEEEEEcCCeEEEEEeCCHHHHHHHHHHH
Confidence 488997541 2459999999999999999888 11 224455555 8899999999999999999999
Q ss_pred HHHHhc
Q 002614 70 KALITR 75 (900)
Q Consensus 70 ~~l~~~ 75 (900)
++|+.+
T Consensus 118 ~~L~~~ 123 (123)
T PF12814_consen 118 RYLLQK 123 (123)
T ss_pred HHHhhC
Confidence 999863
No 21
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.75 E-value=9.4e-09 Score=73.47 Aligned_cols=30 Identities=53% Similarity=1.047 Sum_probs=26.1
Q ss_pred EEEEEECCCcceeeecCCeEEEEecCCCCC
Q 002614 523 VEEVACGAYHVAALTSTSKVYTWGKGANGQ 552 (900)
Q Consensus 523 V~~Ia~G~~Ht~aLt~~G~Vy~WG~n~~GQ 552 (900)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 22
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.74 E-value=1.5e-08 Score=72.39 Aligned_cols=30 Identities=37% Similarity=0.871 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEecCCeEEEEecCCCCC
Q 002614 353 LSYISCGLWHTAVVTSAGHLFTFGDGSFGA 382 (900)
Q Consensus 353 I~~VacG~~ht~aLT~~G~Vy~wG~n~~Gq 382 (900)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 23
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.72 E-value=4.5e-09 Score=121.14 Aligned_cols=72 Identities=24% Similarity=0.595 Sum_probs=52.9
Q ss_pred EecccccccC-ccccCCCCCCCCcc-----cccccccCCCceeecCcCChhhhhhc--c---CCCC-CCCcccccccccc
Q 002614 589 CLHKWVSSVD-HSVCSSCHNPFGFR-----RKRHNCYNCGLVFCKACSSRKSLKAA--L---APSI-NKPYRVCDDCFTK 656 (900)
Q Consensus 589 ~~~k~vs~~d-~s~C~~C~~~Fsf~-----r~rh~C~~CG~~~C~sCss~k~~~~~--~---~~~~-~~~~RVC~~C~~~ 656 (900)
..+.|.++.+ ...|+.|+..|++. .++||||+||.+||+.|+++++..+. + +... ..++||||.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4567888777 47899999999754 47999999999999999997764221 1 1111 1256899999977
Q ss_pred cccc
Q 002614 657 LKKT 660 (900)
Q Consensus 657 l~~~ 660 (900)
++..
T Consensus 529 ~EnL 532 (1374)
T PTZ00303 529 YETV 532 (1374)
T ss_pred HHhH
Confidence 7553
No 24
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.71 E-value=3e-09 Score=117.38 Aligned_cols=75 Identities=33% Similarity=0.778 Sum_probs=65.0
Q ss_pred ceeEEEEecccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccc-----cccccc
Q 002614 583 NFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCD-----DCFTKL 657 (900)
Q Consensus 583 ~~T~aI~~~k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~-----~C~~~l 657 (900)
..++.+.-+.|+++.+...|+.|..+|.++|+||||+|||.+||..|+...++.|..+ ..+.+|||. +||..-
T Consensus 885 stsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~g--l~ka~rvcrpqsnldc~~rq 962 (990)
T KOG1819|consen 885 STSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHG--LDKAPRVCRPQSNLDCLTRQ 962 (990)
T ss_pred ccccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccc--cccCceecCCcccccceeec
Confidence 3455666788999999999999999999999999999999999999999888777776 569999999 898764
Q ss_pred cc
Q 002614 658 KK 659 (900)
Q Consensus 658 ~~ 659 (900)
..
T Consensus 963 dq 964 (990)
T KOG1819|consen 963 DQ 964 (990)
T ss_pred cc
Confidence 33
No 25
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.56 E-value=2.7e-08 Score=82.14 Aligned_cols=55 Identities=44% Similarity=1.037 Sum_probs=48.1
Q ss_pred ccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccc
Q 002614 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~ 655 (900)
...|..|+..|++..++|||+.||.+||..|+..+...+.. ...++.|||+.||+
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35699999999999999999999999999999988766543 25689999999996
No 26
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.77 E-value=2.1e-06 Score=95.13 Aligned_cols=68 Identities=35% Similarity=0.854 Sum_probs=52.6
Q ss_pred ccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhc------------cC--------CCCCCCccccc
Q 002614 592 KWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAA------------LA--------PSINKPYRVCD 651 (900)
Q Consensus 592 k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~------------~~--------~~~~~~~RVC~ 651 (900)
-|..+.+...|..|.+.|+.+++|||||-||.|+|+.|+..-....+ .. +....+.|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 47778888899999999999999999999999999999753221000 01 12345689999
Q ss_pred cccccccc
Q 002614 652 DCFTKLKK 659 (900)
Q Consensus 652 ~C~~~l~~ 659 (900)
.|.+.|..
T Consensus 253 hCl~~L~~ 260 (505)
T KOG1842|consen 253 HCLDNLFR 260 (505)
T ss_pred HHHHHHHH
Confidence 99998866
No 27
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.76 E-value=9.2e-06 Score=95.27 Aligned_cols=68 Identities=32% Similarity=0.630 Sum_probs=62.2
Q ss_pred cceeeccceeeeccCccCcccccCCC--CCCCCceEEEEEc----CCCceeeeCCHHHHHHHHHHHHHHHhcCC
Q 002614 10 ERQLKLNQVSRIIPGQRTATFQRYPR--PEKEYQSFSLIYN----DRSLDLICKDKDEAEVWLVGLKALITRGT 77 (900)
Q Consensus 10 ~k~~~~~~i~~v~~G~~t~~f~~~~~--~~~~~~~fsii~~----~~sLdLi~~~~~ea~~W~~gl~~l~~~~~ 77 (900)
|++++|.+|++||+|+.+..|+||.+ ..++.+||.|.|| -++|-|||.+++||+.|+.||++|+...-
T Consensus 61 egai~i~eikeirpgk~skdfdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl 134 (1267)
T KOG1264|consen 61 EGAIDIREIKEIRPGKNSKDFDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTL 134 (1267)
T ss_pred cceeeeeeeeeccCCccchhHHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhc
Confidence 77899999999999999999999975 4788999999995 47999999999999999999999998654
No 28
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.47 E-value=3.8e-05 Score=93.43 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=51.6
Q ss_pred EecccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccc
Q 002614 589 CLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDC 653 (900)
Q Consensus 589 ~~~k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C 653 (900)
..+-|+++.+...|+.|.+.|.+..+|||||+||.++|..|++.|.-.-.+. +..-|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~---e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS---ESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC---cccccccccc
Confidence 3577999999999999999999999999999999999999999876554443 4555666655
No 29
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.46 E-value=3e-05 Score=83.95 Aligned_cols=84 Identities=26% Similarity=0.635 Sum_probs=62.8
Q ss_pred EEeecCceeEEEEec----cc-ccccCccccCCCCCCCCcc-----------cccccccCCCceeecCcCChhhhhhccC
Q 002614 577 RVVCGLNFTAIICLH----KW-VSSVDHSVCSSCHNPFGFR-----------RKRHNCYNCGLVFCKACSSRKSLKAALA 640 (900)
Q Consensus 577 ~IacG~~~T~aI~~~----k~-vs~~d~s~C~~C~~~Fsf~-----------r~rh~C~~CG~~~C~sCss~k~~~~~~~ 640 (900)
-++||.+--+++-.= .. +.-.+.+.|..|.++|.|. -+.|||+.||..+|..|+++....|.++
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 366766555444210 01 1123567799999998543 4479999999999999999999888887
Q ss_pred CCCCCCcccccccccccccccc
Q 002614 641 PSINKPYRVCDDCFTKLKKTDT 662 (900)
Q Consensus 641 ~~~~~~~RVC~~C~~~l~~~~~ 662 (900)
.....|+|++||..|...+.
T Consensus 335 --~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 335 --FEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred --ceeEEEEecccchhhhcCCC
Confidence 56899999999999977655
No 30
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00019 Score=79.27 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=56.2
Q ss_pred cccccccCccccCCCCCCCC-cccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 591 HKWVSSVDHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 591 ~k~vs~~d~s~C~~C~~~Fs-f~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
..|.+......|++|...|+ ...+|||||.|+..||-.|+--+...|.. +....++|||+.|+..|..
T Consensus 152 p~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl~~ 220 (473)
T KOG1843|consen 152 PVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNLES 220 (473)
T ss_pred ccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhccCC
Confidence 45667777889999999998 88999999999999999998766555433 3457899999999999953
No 31
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.41 E-value=0.043 Score=50.68 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=46.3
Q ss_pred eEEEeCCC--cce-eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 2 LIWYSGKE--ERQ-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 2 l~w~~~~~--~k~-~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.|+...+ .+- |.|+.|..|..-... +.....+|.|++.+++|-|.|.+++|++.||.-|+.
T Consensus 33 L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~--------~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 33 LSWAKDVQCKKSALIKLAAIKGTEPLSDK--------SFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred EEEECCCCCceeeeEEccceEEEEEcCCc--------ccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 55664443 222 999999988654332 122246999999999999999999999999999875
No 32
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.34 E-value=0.0076 Score=69.86 Aligned_cols=63 Identities=25% Similarity=0.507 Sum_probs=51.8
Q ss_pred ccCccccCCCCCCCC-cccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccccc
Q 002614 596 SVDHSVCSSCHNPFG-FRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (900)
Q Consensus 596 ~~d~s~C~~C~~~Fs-f~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~~ 661 (900)
......|..|+..|. .+.+||||..||.++|+.|+.++... ....+...|||.+||....-+.
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l---~~~~s~ssrv~~~~~~~~~~a~ 475 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKL---SYDNSRSSRVCMDRYLTPSGAP 475 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhh---cccccchhhhhhhhccCCCCCC
Confidence 455778999999997 88899999999999999999977533 3345789999999998775543
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=94.29 E-value=0.14 Score=45.02 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=44.6
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHHHH
Q 002614 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKALI 73 (900)
Q Consensus 12 ~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~-sLdLi~~~~~ea~~W~~gl~~l~ 73 (900)
.+.|+++ .|..+...+. .....+|.|.++.+ .+-+.|.+++|++.|+..|+.++
T Consensus 47 ~i~l~~~-~v~~~~~~~~-------~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 47 SIDLSGI-TVREAPDPDS-------AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEECCcC-EEEeCCCCcc-------CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3888888 7777666543 45578999999666 99999999999999999999875
No 34
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.11 E-value=9.5 Score=45.09 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=50.9
Q ss_pred CEEEEEeCC-cEEEEEEcCCcEEE-EeCCCCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEE
Q 002614 245 DVHNIACGA-RHAVLVTKQGEIFS-WGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYT 319 (900)
Q Consensus 245 ~I~~Ia~G~-~ht~~Lt~dG~Vy~-wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~Vys 319 (900)
++.+|++|- .-..+||.+|.||. -|-....+.|..= .++..|.... .++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsW-kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSW-KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchh-hhccCccccc-----ceEEEEeccceEEEEecCCcEEE
Confidence 688999998 77889999999875 6655555555322 1333443322 28999999999999999999974
No 35
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=93.79 E-value=0.25 Score=44.20 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=47.7
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHHHHh
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~-sLdLi~~~~~ea~~W~~gl~~l~~ 74 (900)
|.|.++ .|+.....+. ....+...||.|.+..+ ++-|.|.|++|.+.|+..|+..++
T Consensus 47 i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~~ 104 (104)
T PF00169_consen 47 IPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAIK 104 (104)
T ss_dssp EEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHC
T ss_pred EEecCc-eEEEcCcccc----ccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 899999 8887777653 14566789999999554 999999999999999999998763
No 36
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=93.72 E-value=0.23 Score=45.49 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=46.2
Q ss_pred eEEEeCCC---cc-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHH
Q 002614 2 LIWYSGKE---ER-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALI 73 (900)
Q Consensus 2 l~w~~~~~---~k-~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~ 73 (900)
|.++...+ .+ .|.|+.+..|...+.... -+.......+|.|....|++-|.|.+++|++.||..|+.+|
T Consensus 29 L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~---~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 29 LRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMG---APKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEecCCCCCccceEEEcceeEEEeecCCCCC---CCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 45554433 22 399998888775432210 01112234567665688999999999999999999999865
No 37
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.48 E-value=0.23 Score=46.07 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=43.3
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 12 ~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
.|.|+++..|+...+.. +......||.|++.+|+.=|.|.|++|++.||.-|.-
T Consensus 46 ~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 46 SIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred eEEcccceEEeeccccc------cccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHh
Confidence 49999999998775441 1112257999999999999999999999999998763
No 38
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=93.15 E-value=0.23 Score=46.46 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=45.6
Q ss_pred eEEEeCCCc-----c-eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 2 LIWYSGKEE-----R-QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 2 l~w~~~~~~-----k-~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.+|..+.+ + .|.|..|..|..-.... + .+......+||.|+..++++-|.|.|++|.+.||..|+.
T Consensus 33 L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~-~--~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 33 LSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEK-N--PPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEEECCCcccccCcceeEECCcceEEEEecCCc-C--cccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 556655432 1 28888876665422211 0 011123458999999999999999999999999999975
No 39
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.83 E-value=1.2 Score=58.23 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=69.3
Q ss_pred CCCCeeEEE-ecCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEECCCcc-eeeecCCeEEE
Q 002614 467 IDENICQVA-CGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHV-AALTSTSKVYT 544 (900)
Q Consensus 467 ~~~~I~~Ia-~G~~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht-~aLt~~G~Vy~ 544 (900)
.+..|..++ .+.++.++|++.|++-..= . .-.|..+...-....|++|++-..|. +|+|.+|++|.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~--k----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ--K----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc--C----------CCCCccCCCCCCCcchhheeeccccceeEecCCCceee
Confidence 344455543 3567777787777665422 1 11144443322245699999998765 78999999998
Q ss_pred -----EecCCCCCCCCCCCCCCCccEEeecccCCcEEEEeecCceeEEEEecc
Q 002614 545 -----WGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHK 592 (900)
Q Consensus 545 -----WG~n~~GQLG~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~aI~~~k 592 (900)
|=.+..| + ......++|..+.+..|..+....+|...+....
T Consensus 769 ~~k~~WQ~~~~~-----~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 769 LPKEAWQGNAEG-----D-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cCHHHhhCcccC-----C-ccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 5444433 1 1124456666667778999999999999998653
No 40
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=92.61 E-value=0.29 Score=45.18 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 002614 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 40 ~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~ 74 (900)
..||.|+-.+|++=|.|.|++|.+.||..|+.++.
T Consensus 65 ~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 65 PNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred CcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 46999988999999999999999999999998875
No 41
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=92.59 E-value=0.015 Score=67.33 Aligned_cols=65 Identities=26% Similarity=0.718 Sum_probs=48.8
Q ss_pred eccccccc----CccccCCC-CCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccc
Q 002614 590 LHKWVSSV----DHSVCSSC-HNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 590 ~~k~vs~~----d~s~C~~C-~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
+|.|.++. ....|+.| +.-|....++|||++||...|.+|..++-....-+ ...|.++||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g--se~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG--SENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc--ccCcccccccccch
Confidence 35555554 44567655 55577778899999999999999999876654443 47899999999954
No 42
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=91.98 E-value=0.086 Score=50.35 Aligned_cols=50 Identities=30% Similarity=0.796 Sum_probs=40.1
Q ss_pred CccccCCCCCCCCcc-cccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccc
Q 002614 598 DHSVCSSCHNPFGFR-RKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 598 d~s~C~~C~~~Fsf~-r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
+...|..|+.+|+|. ...+.|..|...+|..|... ..+.+.++|.-|+..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHH
Confidence 566899999999966 45789999999999999864 246889999999864
No 43
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.67 E-value=0.28 Score=42.62 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=38.3
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~-~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.|.+ ..|......+ ....+|.|++.. +++.|.|.|++|++.|+..|+.
T Consensus 46 i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 46 IPLSG-AEVEESPDDS---------GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred EEcCC-CEEEECCCcC---------CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 56665 4444444332 567999999955 9999999999999999999975
No 44
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.38 E-value=0.4 Score=44.81 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=43.1
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.|+...+|..|.... ....||.|+..+|..=|+|.+++|.+.|+..|..
T Consensus 53 IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 53 IDMNQCTDVVDAEART---------GQKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred EEccceEEEeeccccc---------CCccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999887321 1267999999999999999999999999998864
No 45
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=90.43 E-value=13 Score=44.02 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=65.8
Q ss_pred eCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecC-CCcEEEEEecC-cEEEEEEeCCcEE-EEcCCCCCC
Q 002614 251 CGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILS-GVNVELVACGE-YHTCAVTRSGDLY-TWGDGTYNS 327 (900)
Q Consensus 251 ~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~I~~Va~G~-~hs~aLT~dG~Vy-swG~n~~~~ 327 (900)
.|..-+.+|+.+|++|.= +|...+...-...+... ...+.+|++|. .-..+||.+|.|| -.|-..+
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq-- 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ-- 258 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEeccccc--
Confidence 455666778888888852 12212211111112111 22588999999 7778999999985 4554422
Q ss_pred CccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEE
Q 002614 328 GLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTF 375 (900)
Q Consensus 328 GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~w 375 (900)
.+.|..=. ...+|+.. ..++.|+.|....-+||.+|.||.-
T Consensus 259 Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 44443222 33334333 2399999999999999999999864
No 46
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=90.31 E-value=0.9 Score=42.22 Aligned_cols=35 Identities=14% Similarity=0.556 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 002614 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (900)
Q Consensus 41 ~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~~ 75 (900)
.+|.|+..+|+.=|.|.+++|++.||..|+..|..
T Consensus 68 ~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 68 YGVTLVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred ceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 39999999999999999999999999999998864
No 47
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.29 E-value=2.2 Score=36.24 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
|++.|..+|+.|-+.|++...|=..+.+++....+-=+.-.+|..+|..=|+++..+||.|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46778888888888888888888888877776666666667788888888888888888763
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=90.05 E-value=1.1 Score=41.81 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=41.6
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHH
Q 002614 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKAL 72 (900)
Q Consensus 12 ~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l 72 (900)
.|.|+.+..|..+...+ .....-...|.|...+|++=|+|.+++|.+.||..|+.|
T Consensus 52 ~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 52 VIDLESCSQVDPGLLCT-----AGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEECCccEEEccccccc-----ccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 39999988876553221 111122356888888999999999999999999999765
No 49
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=90.01 E-value=0.19 Score=64.52 Aligned_cols=51 Identities=33% Similarity=0.842 Sum_probs=40.7
Q ss_pred ccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 662 (900)
..+|..|. +...++|||+.||.+||..|.. ...+..|||..|+........
T Consensus 5 ~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~ 55 (1598)
T KOG0230|consen 5 SNVCYDCD---TSVNRRHHCRVCGRVFCSKCQD----------SPETSIRVCNECRGQWEQGNV 55 (1598)
T ss_pred ccchhccc---cccccCCCCcccCceeccccCC----------CCccceeehhhhhhhccccCC
Confidence 45677777 6667899999999999999983 234589999999988876543
No 50
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.79 E-value=0.99 Score=41.25 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHH
Q 002614 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKAL 72 (900)
Q Consensus 40 ~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l 72 (900)
.++|.|+-..|..-|.|.|++|.+.||..|+..
T Consensus 61 ~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 61 KGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 579999999999999999999999999998764
No 51
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=89.13 E-value=2.2 Score=39.81 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQ---LKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
.++..+++.++++|..+--..+.+|...++. .++..+.+++-.++.++..+-++.+..++.++.-.|||
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPN 106 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPN 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444444445555555555555555554442 45555566666666777777777777788888888887
No 52
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.85 E-value=0.073 Score=61.69 Aligned_cols=64 Identities=25% Similarity=0.494 Sum_probs=52.3
Q ss_pred eeeccceeeeccCccCcccccCCC--C--CCCCceEEEEEc---CCCceeeeCCHHHHHHHHHHHHHHHhc
Q 002614 12 QLKLNQVSRIIPGQRTATFQRYPR--P--EKEYQSFSLIYN---DRSLDLICKDKDEAEVWLVGLKALITR 75 (900)
Q Consensus 12 ~~~~~~i~~v~~G~~t~~f~~~~~--~--~~~~~~fsii~~---~~sLdLi~~~~~ea~~W~~gl~~l~~~ 75 (900)
++.|++|..|..|+.-+-.+.-.. - ..-+..|||.|. ...|+.||.|+-|.-+|.-||.+|+..
T Consensus 591 klpvaDIkav~tgkdcphmkek~a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~ 661 (713)
T KOG2999|consen 591 KLPVADIKAVVTGKDCPHMKEKSALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGS 661 (713)
T ss_pred hcCHHHHHHHhcCCCCcchhhcchhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCC
Confidence 499999999999999875543321 1 223789999993 359999999999999999999999975
No 53
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=0.11 Score=64.10 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=90.7
Q ss_pred CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCccCC--CCCCcccccEEe-eecCCCcEEEEEecCcEEEEEEeCCcEE
Q 002614 242 MALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGH--GREADVSHPQLI-EILSGVNVELVACGEYHTCAVTRSGDLY 318 (900)
Q Consensus 242 ~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~--g~~~~~~~P~~v-~~l~~~~I~~Va~G~~hs~aLT~dG~Vy 318 (900)
...+++.|.+-.+..++|...|++|.|-+...--|-. ....+...|.-. -.+.+.+|+.+++..-..-++|++|+|.
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 3456888888888899999999999999765432222 112233344332 2456789999999999999999999999
Q ss_pred EEcCCCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCC
Q 002614 319 TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSF 380 (900)
Q Consensus 319 swG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~ 380 (900)
+|=+-. .-|....-.+..-+++ ...++.+++..|...|+++..++.-+|-||---+
T Consensus 452 sWlDEc----gagV~fkLa~ea~Tki--eed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 452 SWLDEC----GAGVAFKLAHEAQTKI--EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred hHHhhh----hhhhhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 996541 1111111112222233 3556778888899999999999999999995433
No 54
>PRK15396 murein lipoprotein; Provisional
Probab=85.38 E-value=2.8 Score=37.04 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (900)
+|.+|.+||+.|..+.++...+++..+..++ -|+|||++-+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~----~a~~eA~raN 66 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ----AAKDDAARAN 66 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 7778888888888888888777777666555 4778887643
No 55
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.13 E-value=3.1 Score=35.38 Aligned_cols=45 Identities=31% Similarity=0.449 Sum_probs=33.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
+++||.+|..|.+|++.++.+.+.|.+..++...|-..-+..++.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888888887777766665555555543
No 56
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.85 E-value=3.5 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=28.8
Q ss_pred CceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 002614 40 YQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 40 ~~~fsii~~~-~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
..+|+|...+ +++-|.|.|.+|++.||..|+.
T Consensus 58 ~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 58 DKCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 5799999855 9999999999999999999874
No 57
>PLN02153 epithiospecifier protein
Probab=83.81 E-value=81 Score=35.45 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=11.5
Q ss_pred cceeeecCCeEEEEec
Q 002614 532 HVAALTSTSKVYTWGK 547 (900)
Q Consensus 532 Ht~aLt~~G~Vy~WG~ 547 (900)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4555666778999983
No 58
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=83.76 E-value=3.3 Score=35.99 Aligned_cols=50 Identities=16% Similarity=0.410 Sum_probs=38.8
Q ss_pred eeeccceeeeccCccCcccccCCCCCCCCceEEEEEc---CCCceeeeCCHHHHHHHHHHHHH
Q 002614 12 QLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYN---DRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 12 ~~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~---~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
.+.+..+. |..+.... ....+|.|++. .+.+-|-|.+.+|++.|+..|+.
T Consensus 46 ~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 46 SIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 46777766 65554432 24579999996 68999999999999999998863
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.44 E-value=6.6 Score=38.87 Aligned_cols=72 Identities=28% Similarity=0.320 Sum_probs=44.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKT----ANEVIKSLTVQGLN 867 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 867 (900)
.+.+......|+++..++..+|.+|..+-...+.++.++..+++++-..+. ++++... ...=|..|-.+|..
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-e~~~~~~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-ESEKRKSNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhHHHHHhhHHHHHHHHHH
Confidence 455666666777777777777777777777777777777777777664443 3333322 33344455444333
No 60
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=83.41 E-value=3.7 Score=36.71 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKT 853 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (900)
+|.+|.+||+.|..+.++.+.+++.++..++ -|++||++-+.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~----aAk~EA~RAN~ 66 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIY----AAKSEANRANT 66 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7888999999999998888888877665554 56778776543
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.29 E-value=11 Score=40.75 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc-cCC
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV-GLW 873 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 873 (900)
++.+....+.|.+|+..|++|++.|+...++++..+...++++.+.-....+...-.+...-++..+.++|++..+ -||
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~P 123 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLP 123 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5666677777788888888888888877777777777777777766666655555556666777777778888555 555
Q ss_pred CCccchhhHHH
Q 002614 874 NNQDRNRQALL 884 (900)
Q Consensus 874 ~~~~~~~~~~~ 884 (900)
-..+ .|+.-+
T Consensus 124 f~~~-eR~~Rl 133 (251)
T PF11932_consen 124 FLLE-ERQERL 133 (251)
T ss_pred CChH-HHHHHH
Confidence 4444 444443
No 62
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.67 E-value=44 Score=36.59 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=77.7
Q ss_pred eeEeecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeecccCCCCEEEEEeCC---cEEEEEEcCCcEEEEe
Q 002614 193 AHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA---RHAVLVTKQGEIFSWG 269 (900)
Q Consensus 193 ~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~---~ht~~Lt~dG~Vy~wG 269 (900)
+-.+...||.||.=+... |.+|+-+... -.++.+..|. -|.+++..||..|..-
T Consensus 65 ~dvapapdG~VWft~qg~--gaiGhLdP~t---------------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd 121 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--GAIGHLDPAT---------------------GEVETYPLGSGASPHGIVVGPDGSAWITD 121 (353)
T ss_pred cccccCCCCceEEecCcc--ccceecCCCC---------------------CceEEEecCCCCCCceEEECCCCCeeEec
Confidence 344678899999887765 7777654322 1344444443 5888889999998875
Q ss_pred CC-CCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcccccceeeccCC
Q 002614 270 EE-SGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNL 348 (900)
Q Consensus 270 ~n-~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~~~~P~~V~~~l 348 (900)
.. .-++++.........|.+ .+.+-+.-.+.+++..|.||.-|.+-+ +|.|..........|.. .
T Consensus 122 ~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~-yGrLdPa~~~i~vfpaP-q--- 187 (353)
T COG4257 122 TGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGA-YGRLDPARNVISVFPAP-Q--- 187 (353)
T ss_pred CcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeecccc-ceecCcccCceeeeccC-C---
Confidence 43 233333221111111111 233445667889999999999887622 23332222111111111 1
Q ss_pred CCCcEEEEEecCceEEEEecCCeEEEE
Q 002614 349 DGIHLSYISCGLWHTAVVTSAGHLFTF 375 (900)
Q Consensus 349 ~~~~I~~VacG~~ht~aLT~~G~Vy~w 375 (900)
-+.-..+++|-+|.||.-
T Consensus 188 ---------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 ---------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred ---------CCCCcceEECCCCcEEEE
Confidence 133456788999999976
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.19 E-value=6.2 Score=39.08 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=18.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL 826 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (900)
+.+|.+.+..|..||.+++.++..++.+.+.-
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566666666666666666655555444433
No 64
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=81.94 E-value=6.3 Score=45.99 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 839 TVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
++.+.+++-.++.++.++-++.+.+++.++.-+|||-
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3333444445556666666666677777788888873
No 65
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.74 E-value=7.4 Score=32.09 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (900)
.|.+|-++|..|..+-.+++.++..++..+ ..|++||++-+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v----~~ak~EAaRAN 44 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV----QAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455566666666666666666666655444 36788888654
No 66
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.32 E-value=5.1 Score=52.73 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCCeeEEEecCcE-EEEEecCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEECCCcceeeecCC
Q 002614 468 DENICQVACGHDL-SVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540 (900)
Q Consensus 468 ~~~I~~Ia~G~~h-t~aLT~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G 540 (900)
...|+.|+.-..| -+|+|.+|++|..=.-..-..-.+........+|.. ..+..|..+....+|.+.+.-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~l-P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVAL-PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccC-CCCCchhhhhcCCCCceEEEecC
Confidence 4679999998774 568999999997543322111111111112233332 25677999999999998876444
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=80.95 E-value=4.6 Score=37.55 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=38.8
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.|.++..|.. . +. .....+|.|+..+++.=|+|.+++|.+.|+.-|.-
T Consensus 52 I~L~~c~~v~~---~------~d-~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 52 IPLESCFNINK---R------AD-AKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEccceEEEee---c------cc-cccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 89999888752 1 11 12247999999999999999999999999988753
No 68
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.95 E-value=58 Score=36.50 Aligned_cols=94 Identities=24% Similarity=0.298 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhhccCCC
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ----GLNSKVGLWN 874 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~ 874 (900)
.+.....++|+.++++..++|++..| ||..-++++++-..-...+..+.++.-||.|+=..+ ++. .|.++.
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~E----eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n-~~~~~~ 291 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEE----ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN-LEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH----HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-CcCCCc
Confidence 44555677788888887777776544 344445555554455566666777777776665554 333 555666
Q ss_pred CccchhhHHHHHHHHHh-hhheee
Q 002614 875 NQDRNRQALLWEQLGEA-ALKLAI 897 (900)
Q Consensus 875 ~~~~~~~~~~~~~~~~~-~~~~~~ 897 (900)
..-+.--+-|.+|+-|. |+.+||
T Consensus 292 D~~~~~~~~l~kq~l~~~A~d~ai 315 (365)
T KOG2391|consen 292 DEAIECTAPLYKQILECYALDLAI 315 (365)
T ss_pred hhhhhccchHHHHHHHhhhhhhHH
Confidence 66666677788887654 444443
No 69
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=80.77 E-value=3.5 Score=37.39 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHHH
Q 002614 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 39 ~~~~fsii~~~-~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
...||.|+..+ +++=|.|.|++|++.||..|+.
T Consensus 62 k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 62 KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 35789999955 9999999999999999999874
No 70
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=80.54 E-value=14 Score=39.95 Aligned_cols=218 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred CcEEEEEEcCCcEEEEe-CCC-CCccCC-----CCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEc----
Q 002614 253 ARHAVLVTKQGEIFSWG-EES-GGRLGH-----GREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG---- 321 (900)
Q Consensus 253 ~~ht~~Lt~dG~Vy~wG-~n~-~GqLG~-----g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG---- 321 (900)
..|+++.- ++++|.|| .|+ .|.+.. ........|..-..+++ +-+.|++++- .+.+|.+|
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~-gn~MyiFGGye~ 150 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVW-GNQMYIFGGYEE 150 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEE-CcEEEEecChHH
Q ss_pred -CCCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeec
Q 002614 322 -DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETL 400 (900)
Q Consensus 322 -~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l 400 (900)
.+.|.+..--.......|.-..-.+....-+ +.|++.+-+ |.+|.|| |.++...-..-..-..-
T Consensus 151 ~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR-------DFH~a~~~~-~~MYiFG-------GR~D~~gpfHs~~e~Yc 215 (392)
T KOG4693|consen 151 DAQRFSQDTHVLDFATMTWREMHTKGDPPRWR-------DFHTASVID-GMMYIFG-------GRSDESGPFHSIHEQYC 215 (392)
T ss_pred HHHhhhccceeEeccceeeeehhccCCCchhh-------hhhhhhhcc-ceEEEec-------cccccCCCccchhhhhc
Q ss_pred CCCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEecCcE
Q 002614 401 RGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDL 480 (900)
Q Consensus 401 ~~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~h 480 (900)
..+.+.+.+.|.||-..-.-....+..+.+..--+|++|.+|--.--.--|-+.--.+.|.....-.-..--+--|-...
T Consensus 216 ~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR 295 (392)
T KOG4693|consen 216 DTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR 295 (392)
T ss_pred ceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccc
Q ss_pred EEEEecCCcEEEEe
Q 002614 481 SVALTTSGHVYTMG 494 (900)
Q Consensus 481 t~aLT~~G~Vy~wG 494 (900)
-+++-..|+||.+|
T Consensus 296 qC~~v~g~kv~LFG 309 (392)
T KOG4693|consen 296 QCSVVSGGKVYLFG 309 (392)
T ss_pred eeEEEECCEEEEec
No 71
>PRK11637 AmiB activator; Provisional
Probab=80.48 E-value=8 Score=45.28 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
+.+|+..++.+..++..+-+..+.+|+.+.+++.++
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~ 94 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET 94 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344443333
No 72
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.28 E-value=12 Score=39.37 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 806 NQEIIKLRAQVE-------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 806 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
++|+++|+.|.+ +..++-+.++.+.++.+.++++|+.-..+-+. ++.+++++.|...|+
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk 107 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELK 107 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 445555555433 33444444445555555555554443333322 334444444444443
No 73
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.07 E-value=5.8 Score=43.89 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+.+||.+|.+|+-.|.++|.+...|-++..+.+ .++||.=..|+++|+++.+|
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L--------------~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHL--------------QASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666555555554 57788888888888888776
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.97 E-value=15 Score=36.39 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
|...+.+|+.+++.+.++....+.+...++++++.+..
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333333334444443333
No 75
>PLN02320 seryl-tRNA synthetase
Probab=79.64 E-value=6.8 Score=46.49 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQL---------KTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
.||..|-.+-+.+..+.+...+|..+..+++ +++.+.+++-.++.++.++-++.+.++|.++.-+|||-
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~ 170 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNM 170 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444444444444444444444433 34444455555566666677777777888888888874
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.55 E-value=9.4 Score=42.38 Aligned_cols=54 Identities=24% Similarity=0.487 Sum_probs=34.8
Q ss_pred CccccCCCCCCCCccc--ccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccccc
Q 002614 598 DHSVCSSCHNPFGFRR--KRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTD 661 (900)
Q Consensus 598 d~s~C~~C~~~Fsf~r--~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~~ 661 (900)
|-..|..|...--+.. +...- .||+.||.+|...-.. .+...|+.|...|.+..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~---------~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFV---------RGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhc---------CCCCCCCCCCCccchhh
Confidence 3457999987532222 22222 7999999999874321 22237999998887754
No 77
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.81 E-value=6.3 Score=37.74 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 002614 50 RSLDLICKDKDEAEVWLVGLKALITRGTH 78 (900)
Q Consensus 50 ~sLdLi~~~~~ea~~W~~gl~~l~~~~~~ 78 (900)
+..-|.|.|.+|++.||..|+..+.....
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 45568899999999999999999986543
No 78
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.75 E-value=11 Score=44.20 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 839 TVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
+..+.+++-.++.+..++-++.+.+++.++.-+|||=
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444445555566667777777777888888888874
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.74 E-value=11 Score=45.09 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=33.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
.++|.+.+..|++|+.+|+.+++.|....+....+.+.++++.++.
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888889988888888887777666666665555554443
No 80
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.46 E-value=12 Score=38.73 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI-AEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
+.+++..|+.+.+.|+.+......+.+..+++.++.... .+.-.+.....|.-.+.|.+||+.|
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444444444444444444433332221 1112222333444466666777654
No 81
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.14 E-value=6.6 Score=40.68 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHHHhhhhhhcc
Q 002614 851 CKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~ 871 (900)
.+..++-++.|..+|....+.
T Consensus 112 l~~l~~~~~~l~~el~~~~~~ 132 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSEN 132 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444455544443
No 82
>PRK11637 AmiB activator; Provisional
Probab=77.10 E-value=11 Score=44.14 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=34.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (900)
.+++..+.+.+++++++.+++++..+-...+.+++.+.++|+++.....+--.+.+..++=|+.|..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555544444444444444444444333
No 83
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.05 E-value=7.8 Score=36.12 Aligned_cols=77 Identities=29% Similarity=0.299 Sum_probs=60.8
Q ss_pred cchhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 796 DDSKQM--NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI---AEDEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 796 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
..+++. ....-.|+..|-.+.+.|..+.+....+.....+++..+... +.+--++.+..|+-|+.|..+++++.+
T Consensus 16 ~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 16 ENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 456788999999999999999999999999999999888763 445556677778888888888888765
Q ss_pred cC
Q 002614 871 GL 872 (900)
Q Consensus 871 ~l 872 (900)
+|
T Consensus 96 ~l 97 (108)
T PF02403_consen 96 EL 97 (108)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.17 E-value=13 Score=40.90 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=31.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
+..++..++.|.+++.+++.+++.++++.++...+++...+.++
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777776666655
No 85
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.71 E-value=3.3 Score=32.67 Aligned_cols=30 Identities=47% Similarity=0.502 Sum_probs=22.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSE 824 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (900)
-|.|+..++.|.+|.++|+++|..|+.+.+
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467788888888888888888888776643
No 86
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.60 E-value=23 Score=35.14 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
|..+...+..|+.+|...++.|+.+.+..+.++...+.+...+....+.+-.+.|..||=+.-|..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555555555555555555555555555555555555555544443
No 87
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.50 E-value=53 Score=42.85 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=112.6
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCC--CcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCCC
Q 002614 257 VLVTKQGEIFSWGEESGGRLGHGRE--ADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGS 334 (900)
Q Consensus 257 ~~Lt~dG~Vy~wG~n~~GqLG~g~~--~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~ 334 (900)
+=+|-|.++|.|-.++.+++-.=+. ..+..-.+|..-++.-+-.| .|.++|...=+|+..|-.. +....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 3578899999999988766543211 12222233333333333333 4889999999999888442 122222222
Q ss_pred CcccccceeeccCCCCCcEEEEEecCceEEEEe-cCCeEEEE----ecCCCCC-CCCC----CCCCCCcceeeeec--CC
Q 002614 335 KVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVT-SAGHLFTF----GDGSFGA-LGHG----DHISTSIPREVETL--RG 402 (900)
Q Consensus 335 ~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT-~~G~Vy~w----G~n~~Gq-LG~g----~~~~~~~P~~V~~l--~~ 402 (900)
.... -.| +.++..|..|.+-.+-=++++ .+|.||-. +++-|++ +-.- .......|...... ..
T Consensus 168 f~~~---~~i--~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS---FKI--SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc---eee--ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 2111 112 344566666665444444444 55555433 2233333 1100 11122345422222 24
Q ss_pred CeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC---------cccceeecCCCCCCeeE
Q 002614 403 LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP---------RLFPECVAPLIDENICQ 473 (900)
Q Consensus 403 ~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~I~~ 473 (900)
..|.+|+.+....+..+.. +.|.|=+|--+..|.-+.-.... ...-..+....-..|++
T Consensus 243 dpI~qi~ID~SR~IlY~ls------------ek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~Ivs 310 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLS------------EKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVS 310 (1311)
T ss_pred CcceeeEeccccceeeeec------------cCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEE
Confidence 4799999998888887633 77888777666655543221100 00000111111234555
Q ss_pred EEe------cCcEEEEEecCCc-EEEEeCC
Q 002614 474 VAC------GHDLSVALTTSGH-VYTMGSA 496 (900)
Q Consensus 474 Ia~------G~~ht~aLT~~G~-Vy~wG~n 496 (900)
|.. -.-|.+|+|..|. +|.-|+-
T Consensus 311 I~~l~~~es~~l~LvA~ts~GvRlYfs~s~ 340 (1311)
T KOG1900|consen 311 ISPLSASESNDLHLVAITSTGVRLYFSTSS 340 (1311)
T ss_pred ecccCcccccceeEEEEecCCeEEEEeccC
Confidence 542 3559999999995 7776643
No 88
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.12 E-value=13 Score=42.45 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=61.2
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE--------------KCKTANEVIK 859 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 859 (900)
.++.+..+...|..|+..||+-+..|+.+|+.++.+.|++.+.|+.+..+..+|-. ..+|..|+|.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36777888888999999999999999999999999999999999988888877653 3456677777
Q ss_pred HHHHhhhhh
Q 002614 860 SLTVQGLNS 868 (900)
Q Consensus 860 ~~~~~~~~~ 868 (900)
-|..+|..+
T Consensus 378 elrkelehl 386 (502)
T KOG0982|consen 378 ELRKELEHL 386 (502)
T ss_pred HHHHHHHHH
Confidence 776655443
No 89
>PLN02678 seryl-tRNA synthetase
Probab=74.87 E-value=12 Score=43.87 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT----------VTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
..||.+|-.+-++|..+.+.+..|.....+++.. +.+.+++-.++.++..+-++.|.++|.++.-+|||
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566666666666666666666666666665543 22223333334444445555555667777777776
No 90
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=74.14 E-value=5.9 Score=36.53 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=31.9
Q ss_pred CCCceEEEEEcC---CCceeeeCCHHHHHHHHHHHHHHH
Q 002614 38 KEYQSFSLIYND---RSLDLICKDKDEAEVWLVGLKALI 73 (900)
Q Consensus 38 ~~~~~fsii~~~---~sLdLi~~~~~ea~~W~~gl~~l~ 73 (900)
.+.++|.|+-.+ +++.|-|+|+|+=+.|+.-|+.+|
T Consensus 57 ~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 57 GEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 357999999843 699999999999999999999886
No 91
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=74.03 E-value=1.9e+02 Score=34.20 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEEeCCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEE-EEEEeCCcEEEEcCCCCC
Q 002614 248 NIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHT-CAVTRSGDLYTWGDGTYN 326 (900)
Q Consensus 248 ~Ia~G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs-~aLT~dG~VyswG~n~~~ 326 (900)
-|.||..|.++.+..|..+.=-... ++..+...|..|..+++-- +-=+.+|.++.|+.+.+
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~~-----------------fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~- 277 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQGI-----------------FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN- 277 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEeec-----------------cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-
Confidence 3889999999988777655422111 1111112344444444332 22345788999987632
Q ss_pred CCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEE
Q 002614 327 SGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFT 374 (900)
Q Consensus 327 ~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~ 374 (900)
++. ..+. +.-|.-+++++..+|.|.+
T Consensus 278 ----------------~~~-----k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ----------------RIS-----KQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ----------------eEE-----eEee-ecCCceEEEEEecCccEee
Confidence 110 0122 4456667777777777776
No 92
>PHA01750 hypothetical protein
Probab=73.83 E-value=8.8 Score=32.32 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
.|..++|+..|+.|+++++.+-++.+.++++.++++.
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4677899999999999999888888888888887764
No 93
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.30 E-value=42 Score=28.99 Aligned_cols=65 Identities=23% Similarity=0.223 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
.|..||.-||.+...|..+.+..+.++..+.+.-..+...+.+=-..+.--|+-+.+|..+|++.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999998888888777776666554444555555566666666554
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=73.27 E-value=50 Score=41.35 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=43.5
Q ss_pred ecCcEEEEEEeCCc-EEEEcCCCCCCCccCCCCC-cccccceeeccCCCCCcEEEEEecCceEEEEecCCe--EEEEecC
Q 002614 303 CGEYHTCAVTRSGD-LYTWGDGTYNSGLLGHGSK-VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGH--LFTFGDG 378 (900)
Q Consensus 303 ~G~~hs~aLT~dG~-VyswG~n~~~~GqLG~g~~-~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~--Vy~wG~n 378 (900)
.++...++++.+|+ |+++|.+ |..-.-.. .....|..+. ..+..|..|+|-..|.+.-++++. +|.++..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 34455566666664 5566655 22211111 1124555553 257789999999999999998884 5777765
Q ss_pred CC
Q 002614 379 SF 380 (900)
Q Consensus 379 ~~ 380 (900)
..
T Consensus 87 ~~ 88 (933)
T KOG1274|consen 87 EE 88 (933)
T ss_pred Cc
Confidence 44
No 95
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.99 E-value=8.2 Score=35.54 Aligned_cols=60 Identities=27% Similarity=0.628 Sum_probs=39.5
Q ss_pred CeEEEeCC--Ccce--eeccceeeeccCccCcccccCCCCCCCCceEEEEE-------cC-CCceeeeCCHHHHHHHHHH
Q 002614 1 MLIWYSGK--EERQ--LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIY-------ND-RSLDLICKDKDEAEVWLVG 68 (900)
Q Consensus 1 ~l~w~~~~--~~k~--~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~-------~~-~sLdLi~~~~~ea~~W~~g 68 (900)
||-|+.-. ||+. |.|+.+. ||..... |- ....||.|.+ .+ +.|+|.|.+.||.+.|-..
T Consensus 30 ~L~wykd~eeKE~kyilpLdnLk-~Rdve~g--f~------sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkas 100 (110)
T cd01256 30 SLSWYKDDEEKEKKYMLPLDGLK-LRDIEGG--FM------SRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKAS 100 (110)
T ss_pred eeeeecccccccccceeeccccE-EEeeccc--cc------CCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHH
Confidence 57898655 4554 7776542 3433321 21 1127888886 22 6999999999999999765
Q ss_pred H
Q 002614 69 L 69 (900)
Q Consensus 69 l 69 (900)
+
T Consensus 101 f 101 (110)
T cd01256 101 F 101 (110)
T ss_pred H
Confidence 3
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.64 E-value=17 Score=45.29 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=63.6
Q ss_pred cchhhhhHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002614 796 DDSKQMNDSLNQE-IIK-------LRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 796 ~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (900)
.-|.+.-+.|.+| +.+ ++..|+.|+.+-++|-.+++.+++.+++....|..-++|.+.|+|-=+.|..+++.
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566555 332 23357788888999999999999999999999999999999999988888875554
Q ss_pred ----hhccCCCCccchhh
Q 002614 868 ----SKVGLWNNQDRNRQ 881 (900)
Q Consensus 868 ----~~~~l~~~~~~~~~ 881 (900)
+..++|.-+.-.|.
T Consensus 619 vl~~l~~~~P~LS~AEr~ 636 (717)
T PF10168_consen 619 VLQLLNSQLPVLSEAERE 636 (717)
T ss_pred HHHHHhccCCCCCHHHHH
Confidence 45667776654443
No 97
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=72.51 E-value=11 Score=34.73 Aligned_cols=50 Identities=16% Similarity=0.400 Sum_probs=34.7
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCC-CceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDR-SLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~-sLdLi~~~~~ea~~W~~gl~~ 71 (900)
+.+..+ .|++-+.+- .....||.|+...+ +--.+|.+.+|++.||..|++
T Consensus 47 i~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 47 IDLSDA-YLYPVHDSL--------FGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred eecccc-EEEEccccc--------cCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 455555 555544431 12248999988554 666788888999999999975
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=72.32 E-value=19 Score=37.15 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=38.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
+.+++|.-.|.-|..|..+|+..|+.+..-...+..++..+.++++.+
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999998888887777777777777776654
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=71.70 E-value=4.8 Score=48.58 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=53.0
Q ss_pred eEEEeCCCc--ce-eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 002614 2 LIWYSGKEE--RQ-LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITRGTH 78 (900)
Q Consensus 2 l~w~~~~~~--k~-~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~~~~~ 78 (900)
|.|..+... .. |+|++|..|-.=. -..+.-..+|.|||.+|+|-|-|++-+||+.|+.-|+.....+++
T Consensus 598 Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 598 LSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred eEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 567755432 22 8888887653211 123666799999998899999999999999999999998877765
Q ss_pred C
Q 002614 79 S 79 (900)
Q Consensus 79 ~ 79 (900)
.
T Consensus 670 r 670 (800)
T KOG2059|consen 670 R 670 (800)
T ss_pred h
Confidence 4
No 100
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=71.40 E-value=16 Score=36.76 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTS---------KQLKTVTAIAEDEAEKCKTANEVI 858 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 858 (900)
..|..++++|.+|+++|.+-|.--++||..+. +.+++.-..+++..+|.+.-|+-+
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999987654 334444444444444444444333
No 101
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=70.41 E-value=6.7 Score=35.58 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=28.2
Q ss_pred CCceEEEEEcC-CCceeeeCCHHHHHHHHHHHH
Q 002614 39 EYQSFSLIYND-RSLDLICKDKDEAEVWLVGLK 70 (900)
Q Consensus 39 ~~~~fsii~~~-~sLdLi~~~~~ea~~W~~gl~ 70 (900)
+.+.|.|+-.. +.+-|.|.|++|.+.||..|+
T Consensus 57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence 45889997744 999999999999999999986
No 102
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.36 E-value=1.6e+02 Score=31.77 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCCCCc-cCCCCCCcccccEEeeecC--CCcEEEEEecCcEEEEEEeCCcEE
Q 002614 242 MALDVHNIACGARHAVLVTKQGEIFSWGEESGGR-LGHGREADVSHPQLIEILS--GVNVELVACGEYHTCAVTRSGDLY 318 (900)
Q Consensus 242 ~~~~I~~Ia~G~~ht~~Lt~dG~Vy~wG~n~~Gq-LG~g~~~~~~~P~~v~~l~--~~~I~~Va~G~~hs~aLT~dG~Vy 318 (900)
...+|-.++.-..|. +.--||.||.|-+|..-. ++....-.+..|..+..++ ..+-..+.-.++..++---||.+|
T Consensus 61 hdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred cCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence 345677777665554 445579999999886544 5554444556666664332 222233333344444444566777
Q ss_pred EEc
Q 002614 319 TWG 321 (900)
Q Consensus 319 swG 321 (900)
+|-
T Consensus 140 ~~d 142 (325)
T KOG0649|consen 140 QVD 142 (325)
T ss_pred EEE
Confidence 774
No 103
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.35 E-value=23 Score=39.72 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=22.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
+.+++..+.|.+|+.+|+.+.++|.++-+.++.|.++.++.-++.|
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~ 98 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYW 98 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554444444444444444444
No 104
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.80 E-value=21 Score=42.73 Aligned_cols=65 Identities=26% Similarity=0.362 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+.++.|.++...|+.++..|+.+.+..+.+++..++..+..-...++......++++=+..|..
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555444444444443333333333333333
No 105
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=69.71 E-value=27 Score=35.82 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccc
Q 002614 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDR 878 (900)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 878 (900)
++|+-|.++.++..+....+|.+.+.. ..-.+.|--|+|=|.-+......++|.+|++||-
T Consensus 24 ~iravV~~ie~~~r~iq~~L~~vhq~~-------~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyy 84 (226)
T KOG3067|consen 24 KIRAVVDEIEEKLREIQLLLQNVHQNE-------NLIPKECGLAREDLENIKQKYRMLAELPPAGQYY 84 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-------ccchHHHHHHHHHHHHHHHHHHHHhhcCCccceE
Confidence 444455555555555554444444311 0123457777777777888889999999999973
No 106
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.67 E-value=27 Score=36.76 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=24.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
+-|.++.+.+..++..-+..-++....-++.+.+|..++++.++...-|++++.
T Consensus 80 ~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~ 133 (204)
T PRK09174 80 GIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAK 133 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333322233333333445555555555555555555544
No 107
>PHA03098 kelch-like protein; Provisional
Probab=68.96 E-value=1.6e+02 Score=35.33 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=11.7
Q ss_pred cEEEEEEeCCcEEEEcCC
Q 002614 306 YHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 306 ~hs~aLT~dG~VyswG~n 323 (900)
.|+++ .-+|+||.+|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 34444 458999999854
No 108
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=68.91 E-value=22 Score=45.74 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccchhhHH
Q 002614 829 ELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDRNRQAL 883 (900)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 883 (900)
+...+++.++++..++.+|.++.+-++.-++.|..+|+++..++-+..+-++...
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~ 542 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN 542 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344778899999999999999999999999999999999888888777766554
No 109
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.69 E-value=9.2 Score=38.78 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
.+..|+..|++|+.+|+..+...+.|+..+...+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788888888888888888888887776654
No 110
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.46 E-value=18 Score=38.36 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=25.0
Q ss_pred CCcEEEEEecCcEEEEEEeCCcEEEEcCC
Q 002614 295 GVNVELVACGEYHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 295 ~~~I~~Va~G~~hs~aLT~dG~VyswG~n 323 (900)
+.++..+.|-..+.++||.+|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 34788899999999999999999999544
No 111
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.18 E-value=28 Score=38.86 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=40.6
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
...++||++.|.|+.-.++|++.++.|+++.....+.+.-++.+++||..
T Consensus 232 aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~ 281 (365)
T KOG2391|consen 232 AEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALE 281 (365)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34578899999999999999998888888888888888888888877443
No 112
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.09 E-value=5.9 Score=35.18 Aligned_cols=32 Identities=13% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCceeeeCCHHHHHHHHHHHH
Q 002614 39 EYQSFSLIYNDRSLDLICKDKDEAEVWLVGLK 70 (900)
Q Consensus 39 ~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~ 70 (900)
...||.|+..++++=|.|.|.+|++.||..|+
T Consensus 61 ~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 61 RRFCFEVISPTKTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred CceEEEEEcCCcEEEEECCCHHHHHHHHHHHh
Confidence 35799999988999999999999999999886
No 113
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.09 E-value=7.2 Score=36.01 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 002614 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 40 ~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~ 74 (900)
..+|.|.-.++++-|.|++++|-+.|+.-|+..|.
T Consensus 66 ~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 58899988889999999999999999999998875
No 114
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=67.88 E-value=42 Score=34.04 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=36.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (900)
.+-+.+..+.+.+++...+..-+++.+.-++-+.+++.++++.++...-|++|+++-
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555555555555566666677777777777777776644
No 115
>PLN02153 epithiospecifier protein
Probab=67.76 E-value=2.1e+02 Score=32.06 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=12.2
Q ss_pred cEEEEEEeCCcEEEEcCC
Q 002614 306 YHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 306 ~hs~aLT~dG~VyswG~n 323 (900)
.|++++ .+++||.+|-.
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999864
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.23 E-value=31 Score=34.02 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhhc
Q 002614 854 ANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 854 ~~~~~~~~~~~~~~~~~ 870 (900)
++--+..|..||+++.|
T Consensus 124 ~~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 124 SKSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 34445667778887754
No 117
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.19 E-value=25 Score=29.01 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (900)
+.|+.||.++...+..++.+-++...++++.++.++..+.+=
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999988888888999988888877653
No 118
>PRK09039 hypothetical protein; Validated
Probab=67.11 E-value=25 Score=39.93 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=39.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTAN 855 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (900)
+.++..-.....+|..|++|++.|+.+....+.+|..++++.+++-....+--++..+|.
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444556677777777777777777777777777777666666655555555554
No 119
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=66.42 E-value=7.4 Score=35.97 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHh
Q 002614 40 YQSFSLIYNDRSLDLICKDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 40 ~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~ 74 (900)
..||.|.-.++++-|.|.+++|-+.|+..|+.-|.
T Consensus 64 ~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 64 PHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 36999988889999999999999999999988774
No 120
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.31 E-value=29 Score=36.84 Aligned_cols=79 Identities=14% Similarity=0.248 Sum_probs=46.8
Q ss_pred CCCCeeEEEecCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCcceeeec----CCcCCCCEEEEEECCCcc-eeeecCCe
Q 002614 467 IDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVD----GEIAESFVEEVACGAYHV-AALTSTSK 541 (900)
Q Consensus 467 ~~~~I~~Ia~G~~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~----~~l~~~~V~~Ia~G~~Ht-~aLt~~G~ 541 (900)
.+.++..+.|-..+.++||.+|.+|+|--...-.. .+. ....|..-. .......|+.+....... ++..++|+
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~ 88 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD 88 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 35678889999999999999999999975542211 111 011121110 012345576666665444 44456677
Q ss_pred EEEEec
Q 002614 542 VYTWGK 547 (900)
Q Consensus 542 Vy~WG~ 547 (900)
.|+|=.
T Consensus 89 ~y~y~~ 94 (219)
T PF07569_consen 89 SYSYSP 94 (219)
T ss_pred EEEecc
Confidence 777753
No 121
>smart00030 CLb CLUSTERIN Beta chain.
Probab=65.74 E-value=28 Score=36.10 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 002614 804 SLNQEIIKLRA---QVEELTSKSEHLEA----ELERTSKQLKTVTAIAEDEAEKCKTANEVI 858 (900)
Q Consensus 804 ~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (900)
-+++||++--. |.+.++.+.+++.. -|++++++-++|..+|.|.-+|.+++.+|-
T Consensus 19 yvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 19 YINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888766 77777777766654 367899999999999999888988888765
No 122
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.57 E-value=18 Score=42.23 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE----DEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
..+|..|-.+-++|..+.+.+..|..+..|+++....... +--++.|..|+=|+.|..+++++.+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777778877766332211 1112334444555555555555443
No 123
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.41 E-value=19 Score=31.78 Aligned_cols=44 Identities=32% Similarity=0.474 Sum_probs=26.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
+++||..|..|.+|+..+++.-+.|.++-++...|-+.-+.++.
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777666666666666665555555544444443
No 124
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=65.07 E-value=2.1e+02 Score=32.62 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.3
Q ss_pred cEEEEEEeCCcEEEEcCC
Q 002614 306 YHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 306 ~hs~aLT~dG~VyswG~n 323 (900)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 125
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.05 E-value=31 Score=33.11 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=32.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
++.|...-..+.-|+..|+.++..|...-+....||=++. .+.+..++++.-+..|..+++++..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~-----------~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM-----------EENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555444444444443333 3333345555556666667766643
No 126
>PRK14161 heat shock protein GrpE; Provisional
Probab=64.87 E-value=33 Score=35.25 Aligned_cols=68 Identities=29% Similarity=0.347 Sum_probs=48.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+-+.+.-+.+.+|+..|++++++++.+.....++++-+++..+.-...+++-+- -+.+++++-.+.+
T Consensus 14 ~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~-~~~~~~LLpv~Dn 81 (178)
T PRK14161 14 NDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAI-ATFAKELLNVSDN 81 (178)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 3445566667788888888888888888888888888888887766655544333 4666666666655
No 127
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.81 E-value=40 Score=34.67 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
+.+.+|+.+...+.++......++...++...+.-...++..++.++.++.++.+..++.++-
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555555555555555555666677777777777777666665
No 128
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.76 E-value=29 Score=35.80 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=45.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhhhh
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT----------------SKQLKTVTAIAEDEAEKCKT 853 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 853 (900)
+........+.+-|++|+++|...+++|...+..+... ...++++.....||-.||..
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~ 78 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEE 78 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHH
Confidence 44556667788999999999999999999999888422 24577777777787777776
No 129
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.61 E-value=25 Score=42.08 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=72.0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc--
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV-- 870 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 870 (900)
..+|+..+.-..+..|+.+|+.++++|+.+-+..+.......+++.+....+.+--++..-+|-=||.|..+++.+..
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en 178 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557777777788999999999999999999999999999999999988887777777788889999999998777753
Q ss_pred -cCCCCccchhh
Q 002614 871 -GLWNNQDRNRQ 881 (900)
Q Consensus 871 -~l~~~~~~~~~ 881 (900)
+|+.--.|.|.
T Consensus 179 ~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 179 SRLREELARARK 190 (546)
T ss_pred hhhHHHHHHHHH
Confidence 44444444443
No 130
>PRK14160 heat shock protein GrpE; Provisional
Probab=64.45 E-value=41 Score=35.56 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=51.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
....+++..+.|.+++.+|++++++|+.+.....++.+-+++..+.-...+..-| ..+.+++++-.+.+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlDn 123 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLDN 123 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3567788888899999999999999999888888888888888776665555443 35666666655554
No 131
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.35 E-value=31 Score=40.43 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhhhhc
Q 002614 854 ANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 854 ~~~~~~~~~~~~~~~~~ 870 (900)
....|..|+.||+.+..
T Consensus 128 ~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 128 LQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 44555666666665544
No 132
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.30 E-value=38 Score=36.47 Aligned_cols=78 Identities=28% Similarity=0.300 Sum_probs=45.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
++.+++.-..|+.|+..|...++.|..+......++.+.++.+-++-.-+.+|. +.+.+-...+-.|.-++.++|||
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~---~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV---AEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCH
Confidence 344455555555555555555555555555555555555555544443333333 44566677777888899999997
Q ss_pred C
Q 002614 875 N 875 (900)
Q Consensus 875 ~ 875 (900)
-
T Consensus 175 e 175 (239)
T COG1579 175 E 175 (239)
T ss_pred H
Confidence 3
No 133
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.01 E-value=19 Score=31.25 Aligned_cols=35 Identities=40% Similarity=0.585 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
..+++|+..|+++++.++++-+.++.++++++.--
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45777888888888888777777777777764433
No 134
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=63.77 E-value=60 Score=37.72 Aligned_cols=86 Identities=21% Similarity=0.261 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccch
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDRN 879 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 879 (900)
+.-+...+|+.++...+..-.++.+.++.+|+..++.+..+.....+=+...+..+.=|..+..+|+.+-... |.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-----r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-----RE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-----HH
Confidence 3344556677777776666667777777777777777777777777767777777777888887777765544 77
Q ss_pred hhHHHHHHHHH
Q 002614 880 RQALLWEQLGE 890 (900)
Q Consensus 880 ~~~~~~~~~~~ 890 (900)
|...|=++|.-
T Consensus 113 qr~~La~~L~A 123 (420)
T COG4942 113 QRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHH
Confidence 88888777753
No 135
>PRK14143 heat shock protein GrpE; Provisional
Probab=63.35 E-value=46 Score=35.87 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=51.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+.....+.|.+|+..|++++++|+.+.....++++.++|+.+.=...+++ .+..+.++++|-.+.+
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 335556677888999999999999988888888888888888766655555 4457888888877775
No 136
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.09 E-value=2.7 Score=40.26 Aligned_cols=57 Identities=39% Similarity=0.725 Sum_probs=40.2
Q ss_pred cCccccCCCCCC-CCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccc---ccccc
Q 002614 597 VDHSVCSSCHNP-FGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT---KLKKT 660 (900)
Q Consensus 597 ~d~s~C~~C~~~-Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~---~l~~~ 660 (900)
.|...|..|... |..+- -|.|..|...||.-|-.+-.+ +.|+.-+||.-|-- .|.+.
T Consensus 63 ~ddatC~IC~KTKFADG~-GH~C~YCq~r~CARCGGrv~l------rsNKv~wvcnlc~k~q~il~ks 123 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGC-GHNCSYCQTRFCARCGGRVSL------RSNKVMWVCNLCRKQQEILTKS 123 (169)
T ss_pred CcCcchhhhhhccccccc-CcccchhhhhHHHhcCCeeee------ccCceEEeccCCcHHHHHHHhc
Confidence 455668888654 44333 599999999999999764322 25788999999973 45443
No 137
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.08 E-value=25 Score=38.98 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=43.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (900)
...|...--.+.||-++|+.|++++.+.|.+.++|.|.+.+.+.|+.+.-.+
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566799999999999999999999999999999999998875443
No 138
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=63.01 E-value=59 Score=30.24 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 002614 813 RAQVEELTSKSEHLEAELERTSKQL-KTVTAIAEDEA 848 (900)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 848 (900)
+++...+.+.-+..+.|++.+...+ +||-.|++++-
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666655555 66666665554
No 139
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=62.83 E-value=59 Score=32.77 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=28.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
.-+....+.+..++..-+..-+++...-+..+.++..++++..+....|++++.
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~ 86 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAE 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444555555555665555555555554
No 140
>PRK14148 heat shock protein GrpE; Provisional
Probab=62.74 E-value=51 Score=34.42 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+..+.|++++..|++++++|+.+....-++.+-++|..+.-...+++-+ ..+.+++++-.+.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a-~~~~~~~LLpV~Dn 102 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG-IEKFAKELLPVIDS 102 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 45567788999999999999998888888888888888776665555443 35777777777665
No 141
>PRK14154 heat shock protein GrpE; Provisional
Probab=62.70 E-value=45 Score=35.13 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.|.+|+..|++++++|+.+.....++.+.+++..+.-...+.+-+. .+.+++++-.+.+
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~-e~~~~~LLpVlDn 114 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS-KQLITDLLPVADS 114 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4566677777777777777777777777777666655544444332 4566666665554
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.54 E-value=76 Score=29.77 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=23.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
.+..|...+.|..|-..|++.+..|.++.......+..++.+|.|+.
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555554444444444444444443
No 143
>PRK14155 heat shock protein GrpE; Provisional
Probab=62.32 E-value=38 Score=35.71 Aligned_cols=60 Identities=27% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
+.|.+|+.+|++++++|+.+.....++++.++|..+.-...+++-+- -+.+++++-.+.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 75 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAI-QKFARDLLGAADN 75 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhh
Confidence 56777888888888888888888888888888777665555544333 4556665555554
No 144
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.22 E-value=29 Score=43.45 Aligned_cols=74 Identities=27% Similarity=0.323 Sum_probs=52.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEE-LTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
|.--+.+..|.+||.+|+.|++. -..+..+.+.+++++.|-|+|.. ..=-+|.++..++-+.+.+||..|---|
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~---~twEEkl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEIT---VTWEEKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777899999999999887 33455566666666666665543 2224688888899999999998875443
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.20 E-value=21 Score=43.65 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=34.4
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
..++.+.+.+|...-|+.+|+++++++.++...+--|-|++..+++
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3478889999999999999999998888776665555555544443
No 146
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.14 E-value=20 Score=41.98 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=30.5
Q ss_pred cchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMND-SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 796 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
+++++++- ..-.+|..|..+-++|..+.+....|..+..|+++.
T Consensus 16 ~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 16 EALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555531 224677777778888888888888888888888765
No 147
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.92 E-value=28 Score=41.87 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=39.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
++++-.--+.+.+|+..|... ...++.++.+++++++++.++..... ..++++|+++=+.++++||+|.
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~----~~~~~~Le~~~~~l~~~~~~~A~~Ls--~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNS----EESLEALEKEVKKLKAELLEAAEALS--AIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444445555444443 22334445555555555443332221 4588999999999999999875
No 148
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=61.90 E-value=59 Score=34.91 Aligned_cols=73 Identities=25% Similarity=0.311 Sum_probs=44.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
....+...+..++.+...++..+..++...+.+|......++..=.....-+.+-....+=|+.|+.+|++.-
T Consensus 117 E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 117 EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666667777777777777766666664443333334455566666777777777653
No 149
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.87 E-value=2.1 Score=43.31 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=32.7
Q ss_pred cccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 600 s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
+.|..|-..|.-... ---+||++||..|...- -+..++|+.|..+|...
T Consensus 132 ~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~a----------lk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDA----------LKNTNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccc--cccccchhHHHHHHHHH----------HHhCCCCCCcccccchh
Confidence 457777666642221 12489999999997532 24467899999888654
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.76 E-value=58 Score=34.31 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=33.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE 847 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (900)
..+++.....|++|+.+|+++..++.+...+...+++..-+..+....-..+|
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666778888888888888887776666666655444444333333333
No 151
>PRK14153 heat shock protein GrpE; Provisional
Probab=61.54 E-value=37 Score=35.37 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=49.8
Q ss_pred ccchhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 795 IDDSKQM--NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 795 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.++||.. ++.+.+|+.+|++|+++|+.+....-++.+-+++..+.-...+++-+- -+.+++++-.+.+
T Consensus 26 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 95 (194)
T PRK14153 26 AEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTDN 95 (194)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 3455543 456788999999999999999888888988888887766555555444 3677777776665
No 152
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.35 E-value=1e+02 Score=26.84 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHhhhh
Q 002614 851 CKTANEVIKSLTVQGLN 867 (900)
Q Consensus 851 ~~~~~~~~~~~~~~~~~ 867 (900)
..+.++=|++|-..|++
T Consensus 55 ~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 55 RNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 45566666766666554
No 153
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.18 E-value=79 Score=30.08 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
+..+.+.++-..|+.+-..|......-+.=++....+...|...|.+|......-..=|+-|+++|..|....
T Consensus 25 ~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 25 RREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445554555555555555555566666677888888888877777778888888888776543
No 154
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.01 E-value=82 Score=34.31 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc---cCCCC
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV---GLWNN 875 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~ 875 (900)
+..-+.+..++..|..+++.|..+...-....+......+++..-|.+-....+....-|+.|..|+..+.+ .+|+.
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 333444555555555555555555555555555555566666656666666666666667777777777777 55554
Q ss_pred cc
Q 002614 876 QD 877 (900)
Q Consensus 876 ~~ 877 (900)
.-
T Consensus 124 ~l 125 (264)
T PF06008_consen 124 DL 125 (264)
T ss_pred HH
Confidence 43
No 155
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=60.90 E-value=1.2e+02 Score=32.97 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=24.5
Q ss_pred cccEEeeecCCCcEEEEEecCcEEEEE-EeCCcEEEEcCC
Q 002614 285 SHPQLIEILSGVNVELVACGEYHTCAV-TRSGDLYTWGDG 323 (900)
Q Consensus 285 ~~P~~v~~l~~~~I~~Va~G~~hs~aL-T~dG~VyswG~n 323 (900)
..|+.+..-.+.-=.-+-|-+.|+++- ++++.|-.|-..
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 345555444432223456888888776 778999999654
No 156
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=60.53 E-value=32 Score=32.28 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI----------------------AEDEAEKCKTANEVIKS 860 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 860 (900)
+.+..+.++++.+++.+.++....+.++++.+..+++.-.+ ..+-..+.+...+-||.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~ 85 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777888888888888888888888877777655433 11222344555667777
Q ss_pred HHHhhhhhhccCCCCcc
Q 002614 861 LTVQGLNSKVGLWNNQD 877 (900)
Q Consensus 861 ~~~~~~~~~~~l~~~~~ 877 (900)
|..+++.+.++|-.-+.
T Consensus 86 lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 86 LQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666544333
No 157
>PRK10869 recombination and repair protein; Provisional
Probab=60.03 E-value=25 Score=42.59 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHhhhhhh
Q 002614 850 KCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~ 869 (900)
+.+||+++-+.++.+|++|.
T Consensus 368 R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 368 RQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 55789999999999998874
No 158
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.76 E-value=37 Score=39.93 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 820 TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
..+.+++|.+|++.++.+++...+..+..+|.+.-.+-|+.|.+|++.+..++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34455556666666666665556666667777777788888888887766653
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.70 E-value=50 Score=36.13 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
+..|+.+++.+++.|+...+.+..+++..++++.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333
No 160
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.37 E-value=39 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
-+.|+.+|+.|.++|..|.+.-.....+++.++..+..|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776666666666666555444
No 161
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=59.12 E-value=4.1 Score=52.99 Aligned_cols=31 Identities=35% Similarity=1.074 Sum_probs=27.9
Q ss_pred cCccccCCCCCCCCcccccccccCCCceeecCc
Q 002614 597 VDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKAC 629 (900)
Q Consensus 597 ~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sC 629 (900)
...-.|..|++.|.-.|++||| ||.+||.+|
T Consensus 95 ~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 95 SSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred cccchhhhhccchhhhhccccc--CccccCCcc
Confidence 3455799999999999999999 999999999
No 162
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.70 E-value=28 Score=33.24 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=40.6
Q ss_pred eeccceeeeccCccCcccccC--CCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRY--PRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~--~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|-++.--.|..|.....-... ....+-.+.|.|.-.+|+|=|.|.|+.|++.|+..|+.
T Consensus 60 il~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 60 ILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred EEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 556666666666554211111 11233457888877999999999999999999999863
No 163
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.68 E-value=43 Score=42.42 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHH
Q 002614 58 DKDEAEVWLVGLKA 71 (900)
Q Consensus 58 ~~~ea~~W~~gl~~ 71 (900)
|.++.+.|..-...
T Consensus 39 ~~~~i~~~l~~~~e 52 (782)
T PRK00409 39 DFEEVEELLEETDE 52 (782)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.56 E-value=60 Score=35.10 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=20.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
.|...-+.|+.|+..|+.+.+.+...-+.++.++..+++++++..
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333
No 165
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.53 E-value=61 Score=33.57 Aligned_cols=61 Identities=20% Similarity=0.142 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+.|.+++..|++++++|+.+.-...++.+.++|..+.-...+++.+. -+.+++++-.+.+
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 94 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI-ESFAESLLPVKDS 94 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 455777888888888888888888888888888887766655554443 3556666655554
No 166
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.44 E-value=27 Score=39.41 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (900)
+..-..+..+|..++.++.+|+.+.+..+.++++.
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344433333333433333333333333
No 167
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=58.23 E-value=48 Score=31.75 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHhh
Q 002614 844 AEDEAEKCKTANEVIKSLTVQG 865 (900)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~ 865 (900)
..++-.||.-+||++..|..|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 6788889999999999998843
No 168
>PHA02713 hypothetical protein; Provisional
Probab=58.18 E-value=2e+02 Score=34.97 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=14.1
Q ss_pred cCcEEEEEEeCCcEEEEcCC
Q 002614 304 GEYHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 304 G~~hs~aLT~dG~VyswG~n 323 (900)
...+..+..-+|+||.+|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44444556668999999964
No 169
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=57.82 E-value=3.7 Score=45.26 Aligned_cols=64 Identities=25% Similarity=0.525 Sum_probs=50.2
Q ss_pred cccccCccccCCCCCCCCcccccccccCCCceeecCcCC----hhhhhhccCCCCCCCcccccccccc
Q 002614 593 WVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSS----RKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 593 ~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss----~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
|....+...|..|...|.|+++.|+|+.||++||..|.. +|.+.+..-.-.+...+.|..|++.
T Consensus 14 ~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 14 WQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 555667788899999999999999999999999999976 3334444433456788889998877
No 170
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.76 E-value=49 Score=38.63 Aligned_cols=71 Identities=24% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQ----LKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
|..|..++..++++|+.+-.....+|.+..++ +.+..+-+++-+.+.+++++-.+.++++|+++.-.+||=
T Consensus 34 ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 34 LDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 44455555556666666666666666533332 233444556667777888888888888898888888873
No 171
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=57.73 E-value=25 Score=35.28 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=54.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC--
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN-- 874 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 874 (900)
.+....+.+..++..|++++++|..+.....++++...+.++.-...++..+ .-+.++++|..+. +|..+.+.++.
T Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~-~~~~~~~ll~v~D-~l~~a~~~~~~~~ 85 (165)
T PF01025_consen 8 EEDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYA-LEKFLKDLLPVLD-NLERALEAAKSNE 85 (165)
T ss_dssp CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH-HHHHHHCC-SHHC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHhhhccc
Confidence 3445555666777777778888877777777778777777755444333322 2344555554443 55555555541
Q ss_pred --CccchhhHHHHHHHHHhhhhe
Q 002614 875 --NQDRNRQALLWEQLGEAALKL 895 (900)
Q Consensus 875 --~~~~~~~~~~~~~~~~~~~~~ 895 (900)
.....--.+++.+|-..--+.
T Consensus 86 ~~~~~~~g~~~~~~~l~~~L~~~ 108 (165)
T PF01025_consen 86 EEESLLEGLEMILKQLEDILEKN 108 (165)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC
Confidence 111222345667765544433
No 172
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.38 E-value=31 Score=40.70 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHhhhhhhcc
Q 002614 852 KTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~ 871 (900)
+..++.++.|.+++++|.+.
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 173
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=57.35 E-value=86 Score=36.90 Aligned_cols=88 Identities=22% Similarity=0.144 Sum_probs=56.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH-----H
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER------------------------TSKQLKTVTAIA-----E 845 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~-----~ 845 (900)
.-+.-.++|.+++|-+-|++|+.+|+..||....|-.+ ..|++.+..++. .
T Consensus 18 Kft~~etldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYvmYyEmSygLniemhKq~EI~KRLn~i~aQl~PfLsq 97 (705)
T KOG0639|consen 18 KFTILETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTICAQLIPFLSQ 97 (705)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeeeeeccccchhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 44556788999999999999999999999876543322 233444444433 4
Q ss_pred HHHHhhhhHHHHHHHHHH-hhhhhh----ccCCCCccchhhH
Q 002614 846 DEAEKCKTANEVIKSLTV-QGLNSK----VGLWNNQDRNRQA 882 (900)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~l~~~~~~~~~~ 882 (900)
|.-+.|-+|-|-.|..|. +|+.+. ..||++---.+|+
T Consensus 98 ehQqqvlqAvEraKqvT~~eln~iig~qaq~ls~g~l~P~p~ 139 (705)
T KOG0639|consen 98 EHQQQVLQAVERAKQVTMSELNAIIGLQAQHLSHGVLTPHPA 139 (705)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcccccccCCCCCCCCCcc
Confidence 555677777777777776 455443 3556553333344
No 174
>PRK14141 heat shock protein GrpE; Provisional
Probab=57.17 E-value=48 Score=35.00 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
+.+.+++..|++++++|+.+....-++++.+++..+.-...+++-+. .+.+++++-.+.+
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~-~~~~~dLLpViDn 93 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGI-AGFARDMLSVSDN 93 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHhH
Confidence 34666777777777777777777777777777766655544444332 4666666666554
No 175
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.13 E-value=82 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=11.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTS 821 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (900)
++++.-..+.+|+.+++.++.++..
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555554443333
No 176
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=57.11 E-value=60 Score=34.73 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=62.1
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER---------TSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (900)
.++.++..+..|.||+.-..+|-++|.......|.+++. .-.+-+.+..+|.+--+..|-+-|=+|.++.+
T Consensus 121 e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~ 200 (254)
T KOG2196|consen 121 EVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKS 200 (254)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367788899999999999999999998888888877654 45566777778888788888888888888888
Q ss_pred hhhhhc
Q 002614 865 GLNSKV 870 (900)
Q Consensus 865 ~~~~~~ 870 (900)
|++|..
T Consensus 201 lN~~~~ 206 (254)
T KOG2196|consen 201 LNTMSK 206 (254)
T ss_pred HHhccC
Confidence 888763
No 177
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.02 E-value=60 Score=30.39 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERT--SKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
..++.+|++++.....+-+..|.+++.. ++.+...-...++...+.++-.+-|+.++.|+.-|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777765 66666666666777777788888888888777655543
No 178
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=56.99 E-value=8.8 Score=48.62 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=60.7
Q ss_pred CCCeeEEEecCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC---cceeeecCCcCCCCEEEEEECCCcceeeecCCeEEE
Q 002614 468 DENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADG---LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYT 544 (900)
Q Consensus 468 ~~~I~~Ia~G~~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~ 544 (900)
..+++.|.+-++..++|..+|++|.|-+.+.--|-.+.... .-|.....-+.+++|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 46788888888899999999999999998766555433211 123222223678899999999999999999999999
Q ss_pred Ee
Q 002614 545 WG 546 (900)
Q Consensus 545 WG 546 (900)
|=
T Consensus 453 Wl 454 (3015)
T KOG0943|consen 453 WL 454 (3015)
T ss_pred HH
Confidence 94
No 179
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=56.97 E-value=6.7 Score=43.73 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=41.2
Q ss_pred eecCceeEEEEecccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCC-CCCCccccccccccc
Q 002614 579 VCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPS-INKPYRVCDDCFTKL 657 (900)
Q Consensus 579 acG~~~T~aI~~~k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~-~~~~~RVC~~C~~~l 657 (900)
.||+...+.+...+-..+.-.-.|..|+..+.+. |..|.+||. +.+......... .....-+|+.|..-|
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 4666665444322122333455799999777665 578888885 222222112211 122344599999988
Q ss_pred cccc
Q 002614 658 KKTD 661 (900)
Q Consensus 658 ~~~~ 661 (900)
+-..
T Consensus 263 K~~~ 266 (309)
T PRK03564 263 KILY 266 (309)
T ss_pred eecc
Confidence 7653
No 180
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.85 E-value=56 Score=36.85 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHHhh
Q 002614 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAE-------LERTSKQLKTVTAI--------AEDEAEKCKTANEVIKSLTVQG 865 (900)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 865 (900)
.=+.|.+|-++|++-.+..++++++.+.- |.+-++++++...- -.||.+..+..++-||....++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhH
Confidence 34456666666666555455544443322 22222233322221 1245556666677777777788
Q ss_pred hhhhccCCCC
Q 002614 866 LNSKVGLWNN 875 (900)
Q Consensus 866 ~~~~~~l~~~ 875 (900)
.||-.-||.-
T Consensus 85 ~DmEa~LPkk 94 (330)
T PF07851_consen 85 FDMEAFLPKK 94 (330)
T ss_pred HHHHhhCCCC
Confidence 8888888764
No 181
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.47 E-value=39 Score=33.99 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=33.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
...+.+.|+.|.+|+.+|+.+++.|..+-+....+++..++.-+..+.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888777777777766666666555443
No 182
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=56.34 E-value=5.4e+02 Score=32.93 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=64.9
Q ss_pred EeCCcEEEEEEcCCcEEEEeCCCC---CccCCCCCCcccccEEeeecCCCcEEEEEe-----cCcEEEEEEeCCcEEEEc
Q 002614 250 ACGARHAVLVTKQGEIFSWGEESG---GRLGHGREADVSHPQLIEILSGVNVELVAC-----GEYHTCAVTRSGDLYTWG 321 (900)
Q Consensus 250 a~G~~ht~~Lt~dG~Vy~wG~n~~---GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~-----G~~hs~aLT~dG~VyswG 321 (900)
+....+.+++|+.|++|..-...- +..+.|..- ...+....+.+|+.+.+ -....+++|.+|.+.-.-
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i----~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPI----VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCH----HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 345567889999999999843221 222222111 11223335567776665 223578889999776654
Q ss_pred CCCCCC-CccCCCCCcccccceeeccCCCCCcEEEEE--ecCceEEEEecCCeEEEEecCCCCCCC
Q 002614 322 DGTYNS-GLLGHGSKVSCWIPRKVSGNLDGIHLSYIS--CGLWHTAVVTSAGHLFTFGDGSFGALG 384 (900)
Q Consensus 322 ~n~~~~-GqLG~g~~~~~~~P~~V~~~l~~~~I~~Va--cG~~ht~aLT~~G~Vy~wG~n~~GqLG 384 (900)
...|.. ...|. .....-++..++.+. ....+.+++|+.|++|.+-....-..|
T Consensus 619 l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 619 LTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 333210 00010 000011233444443 334568999999999999765544444
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.25 E-value=62 Score=37.53 Aligned_cols=41 Identities=32% Similarity=0.395 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
.+..+.|.+|...+++..+.+.+++.+...+++++++++++
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556666666777777777777777766654
No 184
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=56.22 E-value=50 Score=41.80 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 002614 57 KDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 57 ~~~~ea~~W~~gl~~l~~ 74 (900)
.+.++.+.|..-+...+.
T Consensus 38 ~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 38 KSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 355666666555555443
No 185
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.20 E-value=84 Score=33.05 Aligned_cols=54 Identities=17% Similarity=0.080 Sum_probs=27.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
+-+.++.+.+.+++...+..-+++.+.-++-+.+++.++++.++....|.+|++
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444444444444555555555555555555555554
No 186
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.19 E-value=88 Score=31.83 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=24.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
+-+.+..+.+..++...+..-+++.+.-++-+.+++.++++.++....|+++++
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444544544444444433333333344444555555555554444444444
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.17 E-value=29 Score=38.93 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERT 833 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (900)
.+|+...+.++++++++-+..+.+|+..
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333333
No 188
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=55.87 E-value=25 Score=30.11 Aligned_cols=12 Identities=17% Similarity=-0.114 Sum_probs=8.2
Q ss_pred hhhhhhccCCCC
Q 002614 864 QGLNSKVGLWNN 875 (900)
Q Consensus 864 ~~~~~~~~l~~~ 875 (900)
+|++++|-||.|
T Consensus 24 dLHDLaEdLP~~ 35 (66)
T PF05082_consen 24 DLHDLAEDLPTN 35 (66)
T ss_dssp HHHHHHHCTTTT
T ss_pred HHHHHHHccchh
Confidence 577777776665
No 189
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.87 E-value=87 Score=32.49 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=44.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSE---HLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
++.+...|-.|..|+..|+.|.+++.+..+ ..+.|++.++.-+++.=...+--.+.++-...=..+|.+++.++
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776654333 33566666666665555555555555555555556666544444
No 190
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=55.76 E-value=1e+02 Score=30.94 Aligned_cols=23 Identities=4% Similarity=0.110 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002614 826 LEAELERTSKQLKTVTAIAEDEA 848 (900)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~ 848 (900)
.+.+++.+.++.++.+..|++++
T Consensus 61 ~e~~L~~Ar~EA~~Ii~~A~~~a 83 (154)
T PRK06568 61 TNAQIKKLETLRSQMIEESNEVT 83 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 191
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.69 E-value=77 Score=29.09 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
+.+...+.++..+...+.++-...+.|+.+..+ |..||..-+++|..+++.+.
T Consensus 13 ~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadq--------------kyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 13 KELSEQADKKVKELTILEQKKLRLEAEKAKADQ--------------KYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHH
Confidence 333444444444444444444444444444444 44555555555555555443
No 192
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=55.67 E-value=1.3e+02 Score=27.71 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=33.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
..-|.+.|+....+..++...+.+|....+..+.+-+..+..++..-
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id 69 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQID 69 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888888888888877777766555555444433
No 193
>PRK14158 heat shock protein GrpE; Provisional
Probab=55.64 E-value=1.1e+02 Score=32.03 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.....+.|++++..|++++++|+.+.....++.+.+++..+.-...+++-+ ..+.+++++-.+.+
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a-~~~~~~~lLpV~Dn 102 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYG-NESLILEILPAVDN 102 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHhH
Confidence 344556788888888888888888888888888888877766555554433 34566666665554
No 194
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.39 E-value=93 Score=29.94 Aligned_cols=61 Identities=28% Similarity=0.426 Sum_probs=43.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEEL---TSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTAN 855 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (900)
...|....+.+.+||.+|-.+.+.+ ..+....+.+++..+++.+.+..+..|=+++...-+
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4566777788888888888866444 455666778888888888888877776666554433
No 195
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.33 E-value=1.1e+02 Score=30.25 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
|+|+..-+.|..|+..++..-..+...++...++++.++.++...+.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~ 66 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTS 66 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 196
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=54.90 E-value=38 Score=35.87 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=59.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhhHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS---------------KQLKTVTAIAEDEAEKCKTANEVIK 859 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (900)
.++|++.|+++-.++..++.+-+..+++-++...+++.++ +.|++...-+..|--|-++-+| |+
T Consensus 45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~e-i~ 123 (230)
T PF03904_consen 45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNE-IK 123 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HH
Confidence 5789999998888877777766655555555555555433 3345555544444445556666 77
Q ss_pred HHHHhhhhhhccCCCC--ccchhhHHHHHHHHHh
Q 002614 860 SLTVQGLNSKVGLWNN--QDRNRQALLWEQLGEA 891 (900)
Q Consensus 860 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 891 (900)
-++++++.|.+..-.. .|++|+..+.--++.-
T Consensus 124 k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~am 157 (230)
T PF03904_consen 124 KVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAM 157 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 7778777776665444 4556666665555543
No 197
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.89 E-value=64 Score=40.05 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=51.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhhhhcc
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKT---ANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 871 (900)
.+..++.++.|.+++..|++....|...+.....+++++.+.+......+.++...... =++..|.|-+|+.+|...
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455556777777777777777777777777777777777766665555555443333 336777777777776653
No 198
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=54.82 E-value=3.2e+02 Score=29.81 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=75.2
Q ss_pred EeecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeeccc--CCCCEEEE--EeCCcEEEEEEcCCcEEEEeC
Q 002614 195 EDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNI--ACGARHAVLVTKQGEIFSWGE 270 (900)
Q Consensus 195 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~I--a~G~~ht~~Lt~dG~Vy~wG~ 270 (900)
.-|+.++...+-+.+. +-+|-.- ....|.++..+ ...+|..| .|-+.-.+-=.+||.+-.|-.
T Consensus 46 LeiTpdk~~LAaa~~q-hvRlyD~------------~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQ-HVRLYDL------------NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEcCCcchhhhccCC-eeEEEEc------------cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 4577777777777665 3333211 11223233222 22345444 444555555567888888864
Q ss_pred CCCCccCCCCCCcccccEEeeecCCCcEEEEE--ecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcccccceeeccCC
Q 002614 271 ESGGRLGHGREADVSHPQLIEILSGVNVELVA--CGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNL 348 (900)
Q Consensus 271 n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va--~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~~~~P~~V~~~l 348 (900)
-. +.. ++..+.. ..|..|. -...|.+.-+.+|.|+.|-...+ .-....+| .
T Consensus 113 R~---~~~--------qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~--------~c~~~liP------e 165 (311)
T KOG0315|consen 113 RS---LSC--------QRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN--------SCTHELIP------E 165 (311)
T ss_pred cC---ccc--------chhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCC--------ccccccCC------C
Confidence 22 111 1111111 1233333 33455666678999999965532 11111222 2
Q ss_pred CCCcEEEEEecCceE--EEEecCCeEEEEec
Q 002614 349 DGIHLSYISCGLWHT--AVVTSAGHLFTFGD 377 (900)
Q Consensus 349 ~~~~I~~VacG~~ht--~aLT~~G~Vy~wG~ 377 (900)
+...|.+++..+.-+ +++++.|+.|+|-.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 334577777666544 56688999999974
No 199
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=54.70 E-value=11 Score=34.55 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=67.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHhhhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE-----AEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
..+|+..-....+|-.-||..+.++..+-+....|+++++-+..+.-..+... ..+..+.++=+|+...|..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls 82 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS 82 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 35678888888999999999999999999999999999998775443222211 2344567888999888999999
Q ss_pred ccCCCCccchh
Q 002614 870 VGLWNNQDRNR 880 (900)
Q Consensus 870 ~~l~~~~~~~~ 880 (900)
.|+..=+|-||
T Consensus 83 ~kv~eLq~ENR 93 (96)
T PF11365_consen 83 GKVMELQYENR 93 (96)
T ss_pred hHHHHHhhccc
Confidence 99998888888
No 200
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=54.45 E-value=28 Score=29.61 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV-TAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
..|+.+|+.+...+....+..+.+|.. ...+..| -.+...|-+|....++-|..|..+|..|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n-~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN-ENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS-TTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555444443333333321 0011111 1234566667777777777777777765
No 201
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=54.28 E-value=50 Score=28.80 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (900)
++.+-+|-++|++|..+-++++.+.+.....++ -|++|+++-+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~q----AAk~eaarAn 66 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQ----AAKDEAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhHHHHHH
Confidence 455566666777777776666666665554443 3566666544
No 202
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.13 E-value=3.6 Score=35.98 Aligned_cols=57 Identities=21% Similarity=0.662 Sum_probs=23.4
Q ss_pred cccCccccCCCCCCCCccccc---ccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 595 SSVDHSVCSSCHNPFGFRRKR---HNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 595 s~~d~s~C~~C~~~Fsf~r~r---h~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
......+|..|+...+++..- --|-.|+..+|..|+... ......+|..|....++.
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE---------rkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE---------RKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH---------HHTS-SB-TTT--B----
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH---------hhcCcccccccCCCcccc
Confidence 344566899999887765442 358899999999998643 235578999999877654
No 203
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.12 E-value=47 Score=36.25 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCC
Q 002614 808 EIIKLRAQVEELTSK------SEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 873 (900)
+|.=||.++.++.+. .+..+.+.+...++++..-..+..+-++.+.+..-++-+..++.+|++||-
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444333 455666777777887777777777777888888888888888888888764
No 204
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.11 E-value=36 Score=38.98 Aligned_cols=51 Identities=27% Similarity=0.313 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHL-----------------EAELERTSKQLKT---VTAIAEDEAEKCK 852 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~~~~ 852 (900)
|+...+|+.+||.+.+.++...+.. |.|+|-+.+|-+. -+..|+|+++|.|
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4444567777777766555443322 3444444444333 3456788888766
No 205
>PRK14162 heat shock protein GrpE; Provisional
Probab=53.77 E-value=85 Score=32.76 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
...+.|.+++..|++++++|+.+....-++.+.++++.+.=...+++.+ ..+.+++++-.+.+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a-~~~~~~~LLpV~Dn 101 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYE-SQSLAKDVLPAMDN 101 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3345577788888888888888888888888888877766655555544 35666776666665
No 206
>PRK14156 heat shock protein GrpE; Provisional
Probab=53.69 E-value=1.3e+02 Score=30.86 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
+.+|+..|++++++|+.+....-++++.++|..+.-...++.-+ .-+.+++++-.+.+
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a-~~~~~~~LLpVlDn 89 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYR-SQDLAKAILPSLDN 89 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 56677888888888888888888888888877766655554443 35677777776665
No 207
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.62 E-value=24 Score=33.65 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=25.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
++=|-...+.|..++..|+++++.+.++++....++++.+++++
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666665555555555544443
No 208
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.77 E-value=63 Score=33.72 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT----AIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
|..+|..++..+..+.+..+.+++.+.++++-+. .++.-|-.|.++|.+-++.|..+++.+.-+
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777777777777765443 344566778888888888887776665433
No 209
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.48 E-value=63 Score=35.75 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=36.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
.|.+++.-+.+.+++.+++.++.++.........+|..+.+.|+.. .+++.+.+.++..| .|....+++-|+|-+
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l--~~~~~~~~~~~~~e---e~kera~ei~EKfk~ 276 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL--RAKEKAAKRREKRE---ELKERAEEIYEKFKR 276 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHhC
Confidence 3444555555555555555555555444444444444444444322 13333333333333 333345555666665
Q ss_pred Ccc
Q 002614 875 NQD 877 (900)
Q Consensus 875 ~~~ 877 (900)
|--
T Consensus 277 Gek 279 (294)
T COG1340 277 GEK 279 (294)
T ss_pred CCC
Confidence 543
No 210
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.45 E-value=79 Score=35.63 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=9.8
Q ss_pred cchhhhhHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRA 814 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~ 814 (900)
+.++...+.|..|+.+|++
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554
No 211
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=52.23 E-value=1.1e+02 Score=31.46 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
|.++.+.+..++..-+..-+++.+.-++-+.+++.++++.++....|++|++
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333322333333333344444444444444444444443
No 212
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=86 Score=32.71 Aligned_cols=60 Identities=28% Similarity=0.292 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
+.+.+++..|++|+++++.+.....++++-++++.+.-...|+ ..+.-+.|++++-.|.+
T Consensus 39 ~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 39 EEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3445899999999999888888888888888877766555544 33445677777766665
No 213
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=51.68 E-value=34 Score=33.25 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=34.2
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (900)
...-++..++|.+++|...|++|..+|+..|+....|-...++.
T Consensus 16 ~~KfT~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqrh 59 (135)
T PF03920_consen 16 PFKFTTSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRH 59 (135)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHHH
Confidence 34555678899999999999999999999998876654444433
No 214
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=51.62 E-value=18 Score=40.94 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=37.6
Q ss_pred ccCCCCCCCCceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 002614 31 QRYPRPEKEYQSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALITR 75 (900)
Q Consensus 31 ~~~~~~~~~~~~fsii~--~~~sLdLi~~~~~ea~~W~~gl~~l~~~ 75 (900)
|+...+.+|.+||-|-- ++++|=|=|+|.+||+.||..|.+-+..
T Consensus 227 R~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 227 RNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred hhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 34456789999998877 7889999999999999999998776543
No 215
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=51.54 E-value=7.9 Score=43.10 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=33.0
Q ss_pred ccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCC-CCCCcc--cccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPS-INKPYR--VCDDCFTKLKKTDT 662 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~-~~~~~R--VC~~C~~~l~~~~~ 662 (900)
.-.|.-|+..+.+. |..|.+||.- ++...-.+... ....+| +|+.|..-|+-...
T Consensus 210 yL~CslC~teW~~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~ 267 (305)
T TIGR01562 210 YLSCSLCATEWHYV--RVKCSHCEES-------KHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQ 267 (305)
T ss_pred EEEcCCCCCccccc--CccCCCCCCC-------CceeeEeecCCCCCcceEEeeccccccchhhhcc
Confidence 45688888776665 5788888852 22222122211 123456 79999998876633
No 216
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=51.53 E-value=1.3e+02 Score=30.19 Aligned_cols=49 Identities=24% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELE-----RTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 852 (900)
.+.+|..+|.++.+...+.++.+-.++- ..++.++++...|.+|+++.+
T Consensus 49 ~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~ 102 (154)
T PRK06568 49 KLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKK 102 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555554444443332 244445666666666666544
No 217
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=51.51 E-value=1.2e+02 Score=30.22 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=25.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (900)
+-+.++.+....++..-+..-+++...-++-+.+++.++++.++....|++|+++
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333223333333334455555555555555555555543
No 218
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=51.51 E-value=48 Score=39.44 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhhhccCCCCccc
Q 002614 846 DEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDR 878 (900)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 878 (900)
-|.++.+..+.+++.++..|.+++-.|||-.+|
T Consensus 98 ~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~r 130 (473)
T PF14643_consen 98 LEKERADKLKKVLRKYVEILEKIAHLLPPDVER 130 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 367788999999999999999999999999888
No 219
>PLN02400 cellulose synthase
Probab=51.36 E-value=10 Score=48.52 Aligned_cols=53 Identities=19% Similarity=0.617 Sum_probs=40.1
Q ss_pred ccccCCCCCCCCcccc---cccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~---rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
..+|..|+...+.+.. ---|-.|+..+|..|+.. .......+|+.|+...++.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEY---------ERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEY---------ERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhhe---------ecccCCccCcccCCccccc
Confidence 4478888887665543 245899999999999862 2456788999999998764
No 220
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=51.12 E-value=3.6e+02 Score=29.39 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=37.3
Q ss_pred ceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEE
Q 002614 361 WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFT 440 (900)
Q Consensus 361 ~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~ 440 (900)
.|-+.-+.+|.|+.|-..+ ..-.....|.. +..|.+++...+-+...... ..|++|+
T Consensus 137 teLis~dqsg~irvWDl~~------~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~n------------nkG~cyv 193 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGE------NSCTHELIPED-----DTSIQSLTVMPDGSMLAAAN------------NKGNCYV 193 (311)
T ss_pred ceEEeecCCCcEEEEEccC------CccccccCCCC-----CcceeeEEEcCCCcEEEEec------------CCccEEE
Confidence 3444557889999997432 21122233322 23577777777776666533 7899999
Q ss_pred EeCC
Q 002614 441 WGDG 444 (900)
Q Consensus 441 WG~n 444 (900)
|-.-
T Consensus 194 W~l~ 197 (311)
T KOG0315|consen 194 WRLL 197 (311)
T ss_pred EEcc
Confidence 9653
No 221
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=51.04 E-value=75 Score=37.23 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002614 804 SLNQEIIKLRA---QVEELTSKSEHLEA----ELERTSKQLKTVTAIAEDEAEKCKTANEVIK 859 (900)
Q Consensus 804 ~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (900)
-+++||++--. |++.++.+-++... .|++++++-+||+.+|.|--+|.+.+.++-.
T Consensus 13 yvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 13 YVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788877654 77777777666554 4678889999999999999889988888654
No 222
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.98 E-value=98 Score=34.34 Aligned_cols=78 Identities=28% Similarity=0.315 Sum_probs=49.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEH-------LEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV---- 863 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 863 (900)
++.+...+..+..|+.+++..++.++.+++. .+.++..+++.+++++..-.+--.+....+|=|..|..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 5556666666667777777766666666554 44566666777777776655555567777776666554
Q ss_pred hhhhhhccC
Q 002614 864 QGLNSKVGL 872 (900)
Q Consensus 864 ~~~~~~~~l 872 (900)
++++|..++
T Consensus 143 Ei~~L~~~~ 151 (312)
T PF00038_consen 143 EIEELREQI 151 (312)
T ss_dssp HHHTTSTT-
T ss_pred hhhhhhhcc
Confidence 466666655
No 223
>PRK14151 heat shock protein GrpE; Provisional
Probab=50.96 E-value=89 Score=32.13 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.|.+++..|++++++++.+.....++++.++|..+.=...+++-+. .+.+++++-.+.+
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 82 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFAL-EKFAGDLLPVVDS 82 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 3556666677777777766666666777666666554444443332 4566666665554
No 224
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.79 E-value=71 Score=27.34 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAI 843 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (900)
+|.|=..++.|..|-..|+.|+..+...-...-.+.+.+..+|+..++-
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777777777777777777666666666676666655443
No 225
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=50.49 E-value=1.3e+02 Score=29.76 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
-|.+..+.+..++...+..-+.+.+..++.+.++..++++.++...-|.+|+.
T Consensus 32 ~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~ 84 (156)
T PRK05759 32 ALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAA 84 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333333333334444444444444444443333
No 226
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.38 E-value=67 Score=38.15 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=46.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
.+.+++...+....|+.+|+++-++|...-++...+++++|+.|..+ .-| ..+-|-.|..-..|++|+.++
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~----q~e---L~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK----QLE---LSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----HHH---HHHHHhHHHHHHHHHHHHHhh
Confidence 35666777777778888888777777777777777777766665422 222 334556666666777777653
No 227
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.33 E-value=1.2e+02 Score=31.09 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=28.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (900)
+-+.++.+.+..++...+..-+++.+.-.+-+.+++.++++.++....|+.+|++.
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444444444444444555556666555555555555543
No 228
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.06 E-value=58 Score=40.37 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHhhhhh
Q 002614 850 KCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~ 868 (900)
+.+.+++-|+.+..+++.+
T Consensus 450 ~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 450 QLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 229
>PRK14145 heat shock protein GrpE; Provisional
Probab=49.97 E-value=1.9e+02 Score=30.22 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
.....+.|.+++.+|++++.+|+.+....-++.+.+++..+.=...+++.+. -+.+++++-.+.+=-+.|
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-e~~~~~LLpV~DnLerAl 112 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGK-EQVILELLPVMDNFERAL 112 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhHHHHHH
Confidence 3344566888888888888888888888888888888877665555555443 466777766666533333
No 230
>PHA02047 phage lambda Rz1-like protein
Probab=49.90 E-value=39 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=21.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (900)
.+++...-|.++..+..++.||+.|.++++.++.||..
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~ 73 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDR 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666665555555543
No 231
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.90 E-value=27 Score=41.03 Aligned_cols=10 Identities=10% Similarity=0.408 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 002614 804 SLNQEIIKLR 813 (900)
Q Consensus 804 ~~~~~~~~~~ 813 (900)
.|++++.+||
T Consensus 80 ELEKqLaaLr 89 (475)
T PRK13729 80 QMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 232
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.74 E-value=93 Score=34.46 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 836 QLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
.+.++-..+.+.+++.+.-.+-|+.+-..|+++-.
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555444
No 233
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=49.49 E-value=4.5e+02 Score=30.00 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=13.3
Q ss_pred ceEEEEecCCeEEEEecC
Q 002614 361 WHTAVVTSAGHLFTFGDG 378 (900)
Q Consensus 361 ~ht~aLT~~G~Vy~wG~n 378 (900)
.|+++...+|+||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466665568999999953
No 234
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=49.34 E-value=1.5e+02 Score=26.92 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 803 DSLNQEIIKLRAQVEELTSKS-EHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
|.|.+|+..|+..+++|.... +.-..+...+++++++....+++.+.
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~ 48 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAE 48 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888777543 33445566666666666655554443
No 235
>smart00338 BRLZ basic region leucin zipper.
Probab=49.25 E-value=43 Score=28.18 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
-+.|..+|..|.++...|..+......+++.++.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666667666666666666665543
No 236
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=49.20 E-value=24 Score=43.98 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=55.4
Q ss_pred eEEEeCCCcce-eeccceeeeccCccC---------cccccC-CCCCCCCceEEEEEcC-----CCceeeeCCHHHHHHH
Q 002614 2 LIWYSGKEERQ-LKLNQVSRIIPGQRT---------ATFQRY-PRPEKEYQSFSLIYND-----RSLDLICKDKDEAEVW 65 (900)
Q Consensus 2 l~w~~~~~~k~-~~~~~i~~v~~G~~t---------~~f~~~-~~~~~~~~~fsii~~~-----~sLdLi~~~~~ea~~W 65 (900)
|.|.-..++-- ++|+.|...|.|+.. ++|.-- +....|+.-.+|++|- ..+.+||...++|..|
T Consensus 47 LYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w 126 (1189)
T KOG1265|consen 47 LYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPPDRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLW 126 (1189)
T ss_pred EEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCcccccccceEEEEecCCcccceEEEEeeeeHHHHHHH
Confidence 67876555544 999999999999654 222221 2235678889999954 4789999999999999
Q ss_pred HHHHHHHHhc
Q 002614 66 LVGLKALITR 75 (900)
Q Consensus 66 ~~gl~~l~~~ 75 (900)
..||-.|.-+
T Consensus 127 ~~~~~~l~~~ 136 (1189)
T KOG1265|consen 127 TAGLLKLAKS 136 (1189)
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 237
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.12 E-value=1.3e+02 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=21.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (900)
-|.+..+.+..++...+..-+++.+.-+.-+.+++.++++.++....|++++++
T Consensus 47 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 47 ILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333222233333333344444444444444444444443
No 238
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.07 E-value=1.1e+02 Score=32.38 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhhccCCCCccchhhHHHHHHH
Q 002614 818 ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV---QGLNSKVGLWNNQDRNRQALLWEQL 888 (900)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 888 (900)
.+++..+....+++..++.-.+...-..+--++..+..|=||+|.. ||.+|-.+||.--|+-+.. |+.|
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r--~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR--WDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH--HHHh
Confidence 4445555555556666665555555555556677788888888865 8999999999877766543 4444
No 239
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=48.84 E-value=1.4e+02 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCC
Q 002614 839 TVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 873 (900)
..++|..|.....-+-.--|..|..||+|++.||-
T Consensus 109 kitsmls~vmkqny~lslqie~ls~qlqeisdkld 143 (177)
T PF12495_consen 109 KITSMLSDVMKQNYVLSLQIEFLSKQLQEISDKLD 143 (177)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhcc
Confidence 44566666666666666678889999999999885
No 240
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=48.82 E-value=1.5e+02 Score=26.60 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELT 820 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~ 820 (900)
+++-+.+++-+.+++.|+..+.
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~ 46 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3333344444444444444333
No 241
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=48.71 E-value=97 Score=34.74 Aligned_cols=66 Identities=24% Similarity=0.319 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHhh
Q 002614 804 SLNQEIIKLRAQVEELTSKS-----------EHLEAELERTSKQLKTVTAIAEDEAEKCKTANE-------VIKSLTVQG 865 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 865 (900)
.+.+|-..|+.+.+.|..++ ...+.|+|.+..+++.+...+..|.+|++.-++ =+..+..+-
T Consensus 132 k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E 211 (309)
T PF09728_consen 132 KLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETE 211 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 456678888888999999999999998888888 444444444
Q ss_pred hhhh
Q 002614 866 LNSK 869 (900)
Q Consensus 866 ~~~~ 869 (900)
++|.
T Consensus 212 ~~Lr 215 (309)
T PF09728_consen 212 KELR 215 (309)
T ss_pred HHHH
Confidence 4443
No 242
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.64 E-value=95 Score=31.77 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
|.+|+..|++++++|+.+.....++.+.+++..+.=...+.+-|. .+.+++++-.+.+
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~-~~~~~~lLpv~Dn 80 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN-EKLLGELLPVFDS 80 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhH
Confidence 556666677777776666666666666666665544433333322 4555555555444
No 243
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.56 E-value=8.4 Score=45.08 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=39.0
Q ss_pred ccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKTDT 662 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~~~ 662 (900)
...|..|-.+..+-.. -+||++||..|.-.....+ ..+..+-|.-|++.+...+-
T Consensus 186 ~~~CPICL~~~~~p~~----t~CGHiFC~~CiLqy~~~s-----~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR----TNCGHIFCGPCILQYWNYS-----AIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccc----cccCceeeHHHHHHHHhhh-----cccCCccCCchhhhccccce
Confidence 3458888777665432 1499999999975444332 46788999999999877543
No 244
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=48.51 E-value=1.7e+02 Score=28.33 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEEL 819 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~ 819 (900)
|..|+..++.++..+
T Consensus 8 l~~e~~~~~~~~~~~ 22 (132)
T PF07926_consen 8 LQSELQRLKEQEEDA 22 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 245
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.51 E-value=1.1e+02 Score=36.08 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhhccC
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE-KCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
.+..|+++|.+|-+.|+++-+.+....+...++|+.|..-++.|.. .....++-+-.|..+|.+|..+|
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444456677777766555544 55556777777888888888887
No 246
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.17 E-value=87 Score=29.40 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=48.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
...+.|.+..|-|.--+..|++|..++.+++....++|-.+.+.+.. ..+|+.+.+
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34678888999999999999999999999999999999999999877 778885544
No 247
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=48.11 E-value=93 Score=31.18 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=28.3
Q ss_pred ccccchhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002614 793 VTIDDSKQMNDSLNQEII-------KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (900)
..++.+-+.+..|++.+. .|+++++......+.-...|+.+++.++.+....+++..|
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666555 3444444444444444444444444444444444444433
No 248
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=47.88 E-value=2.4e+02 Score=34.43 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=31.7
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEE---EEEECCCcceeeecCCeEEEEec
Q 002614 483 ALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVE---EVACGAYHVAALTSTSKVYTWGK 547 (900)
Q Consensus 483 aLT~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~---~Ia~G~~Ht~aLt~~G~Vy~WG~ 547 (900)
+.+-+|.||+.|.... +.... . ....+ +...... .+..+..+..+..-+|++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~-----~-VE~yd-p~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALS-----S-VERYD-PETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccc-----e-EEEEc-CCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4455889999996542 11111 0 11111 1112222 34456677777788999999984
No 249
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=47.87 E-value=14 Score=29.34 Aligned_cols=49 Identities=14% Similarity=0.390 Sum_probs=34.3
Q ss_pred cCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCccccccccc
Q 002614 602 CSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFT 655 (900)
Q Consensus 602 C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~ 655 (900)
|..|+. .......--|..|+..|+..|........... ...++|+.|..
T Consensus 2 C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~----~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIP----SGDWYCPNCRP 50 (51)
T ss_dssp BTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHH----SSSBSSHHHHH
T ss_pred CcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCC----CCcEECcCCcC
Confidence 666776 44555667899999999999998654432221 22899999864
No 250
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.78 E-value=82 Score=36.61 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=6.4
Q ss_pred cccCCCceeec
Q 002614 617 NCYNCGLVFCK 627 (900)
Q Consensus 617 ~C~~CG~~~C~ 627 (900)
-|.-||.+-|.
T Consensus 242 icliCg~vgcg 252 (493)
T KOG0804|consen 242 ICLICGNVGCG 252 (493)
T ss_pred EEEEccceecc
Confidence 45666666554
No 251
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=47.75 E-value=60 Score=27.84 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
|+..|+++|+.|..++-+.-.+|.-+.+-+=-.|...-+.|.|+=.|=.-+..+..+|+++
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666665555444444444444444444444444444455443
No 252
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=1.1e+02 Score=38.00 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=43.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCC
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 873 (900)
+..+.+++-.+++.+|..++..++..-..++.+++.++++.++..-.-++--+|-+--.+-+-.|+.|+..+.-+|-
T Consensus 640 eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 640 EEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666677777777777777777777777777777766655444333333333333333444444444443333
No 253
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.27 E-value=0.8 Score=51.33 Aligned_cols=65 Identities=23% Similarity=0.524 Sum_probs=52.3
Q ss_pred ccccccCccccCCCCCCCCcccccccccC--CCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 592 KWVSSVDHSVCSSCHNPFGFRRKRHNCYN--CGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 592 k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~--CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
.|....+...|..|-.-|.-.+...+|.. |+.+||-.|+. +.+|.+. ...|.+||.-|.+.+.+.
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~K--atvp~l~--~e~~akv~rlq~eL~~se 527 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLK--ATVPSLP--NERPAKVCRLQHELLNSE 527 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHH--hhccccc--ccchHHHHHHHHHHhhhc
Confidence 46666778889999999998888889987 99999999974 4455554 357899999999988664
No 254
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.26 E-value=84 Score=37.93 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=11.9
Q ss_pred EEEEEECCCcc-eeeecCCeEEE
Q 002614 523 VEEVACGAYHV-AALTSTSKVYT 544 (900)
Q Consensus 523 V~~Ia~G~~Ht-~aLt~~G~Vy~ 544 (900)
|+.|--|-... ++|+-||+|.-
T Consensus 246 IVGIDPGiTtgiAvldldGevl~ 268 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLD 268 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEe
Confidence 55555555443 34566666544
No 255
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=47.01 E-value=10 Score=48.45 Aligned_cols=52 Identities=25% Similarity=0.578 Sum_probs=39.0
Q ss_pred ccccCCCCCCCCcccc---cccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~---rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
..+|..|+...+.+.. ---|--||..+|..|+... .......|+.|+...++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYE---------r~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYE---------RKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhh---------hhcCCccCCccCCchhh
Confidence 4478888887665543 2458899999999998632 45677899999998874
No 256
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.60 E-value=1.2e+02 Score=31.93 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+.+++..|++++++|+.+.....++.+.+++..+.-...+++.|. -+.+++++-.+.+
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4667788888888888888888888888888887766666665554 4667776666665
No 257
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=46.55 E-value=1e+02 Score=33.38 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhhccCCCCcc
Q 002614 807 QEIIKLRA--QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ---GLNSKVGLWNNQD 877 (900)
Q Consensus 807 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 877 (900)
+|+..||+ |-.++...-...+.++......++++-..+..|.....-+||++.++-.| +..|.+.+|+...
T Consensus 6 ~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~lp 81 (243)
T PF07160_consen 6 KELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHLP 81 (243)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 44444554 44455554455555566666666666555555556667777777777664 5556778886654
No 258
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.52 E-value=78 Score=31.90 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002614 822 KSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (900)
+...-..|.++.++.+.|...-.-.+|.|.|.|-++|-+|-...|.
T Consensus 126 K~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 126 KLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444556666777777777777788888888888888876664
No 259
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=46.51 E-value=4.1 Score=39.22 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002614 834 SKQLKTVTAIAEDEAE 849 (900)
Q Consensus 834 ~~~~~~~~~~~~~~~~ 849 (900)
++...+....|.+||+
T Consensus 73 q~~a~~~~~~A~~eA~ 88 (131)
T PF05103_consen 73 QETADEIKAEAEEEAE 88 (131)
T ss_dssp ----------------
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3333444444444443
No 260
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.50 E-value=2.4e+02 Score=30.59 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=29.5
Q ss_pred CcEEEEEecCceEEEEecCCeEEEEecCCCCC-CCCCCCCCCCcceeeee
Q 002614 351 IHLSYISCGLWHTAVVTSAGHLFTFGDGSFGA-LGHGDHISTSIPREVET 399 (900)
Q Consensus 351 ~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~Gq-LG~g~~~~~~~P~~V~~ 399 (900)
..|-.++.-..|- +..-+|.||.|-.|++-. ++.........|..+..
T Consensus 63 gpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~ 111 (325)
T KOG0649|consen 63 GPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDA 111 (325)
T ss_pred CCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCc
Confidence 3455665544443 334569999999998766 55554444555665543
No 261
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=46.45 E-value=1.6e+02 Score=29.99 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
+-|.+..+.+..++..-+.--+++.+.-++-+.+++.++++.++...-|.+|++
T Consensus 43 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~ 96 (173)
T PRK13460 43 KALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDAL 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333322222222333344444444444444444444443
No 262
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.25 E-value=7e+02 Score=31.30 Aligned_cols=261 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred eeeeccceeeeccCCceeE---eecCCCcEEEEcCCCCCcccCCCCCccccccccccccccceeecccCCCCEEEEEeCC
Q 002614 177 FRISLSSVVSSSSHGSAHE---DFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGA 253 (900)
Q Consensus 177 ~r~~~s~~vs~~s~g~~~~---~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~ 253 (900)
|.++-...+...+-+-+.. .+...|+-.++|... -|||+.-.-. ....+-++-.......-...+--+
T Consensus 292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k-lgQLlVweWq--------sEsYVlKQQgH~~~i~~l~YSpDg 362 (893)
T KOG0291|consen 292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK-LGQLLVWEWQ--------SESYVLKQQGHSDRITSLAYSPDG 362 (893)
T ss_pred EecCCceEEEEeecccceeeEEEecccCCEEEEcCCc-cceEEEEEee--------ccceeeeccccccceeeEEECCCC
Q ss_pred cEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecCCCcEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccCCC
Q 002614 254 RHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHG 333 (900)
Q Consensus 254 ~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g 333 (900)
...+.=.+||+|-+|-..+.-.+ -+.-+.-.+...+++..-.+..+-..-||.|-.|--..| -
T Consensus 363 q~iaTG~eDgKVKvWn~~SgfC~----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-------r 425 (893)
T KOG0291|consen 363 QLIATGAEDGKVKVWNTQSGFCF----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-------R 425 (893)
T ss_pred cEEEeccCCCcEEEEeccCceEE----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-------c
Q ss_pred CCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCCeEEEEEecCc
Q 002614 334 SKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVW 413 (900)
Q Consensus 334 ~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ 413 (900)
+......|.++.. .+++++-.|.|.+-|.-+.-.+-.-+.+.-..-..+..-.+ +|..++....
T Consensus 426 NfRTft~P~p~Qf---------------scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f~~~ 489 (893)
T KOG0291|consen 426 NFRTFTSPEPIQF---------------SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSFSPD 489 (893)
T ss_pred eeeeecCCCceee---------------eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEEccc
Q ss_pred eEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEec--CcEEEEEecCCcEE
Q 002614 414 HTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACG--HDLSVALTTSGHVY 491 (900)
Q Consensus 414 hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~ht~aLT~~G~Vy 491 (900)
-+...... =|..|-.|---+ ......|..+. ..+..|+.- +.-.++.|-+|++-
T Consensus 490 ~~~LaS~S------------WDkTVRiW~if~--------s~~~vEtl~i~----sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 490 GSLLASGS------------WDKTVRIWDIFS--------SSGTVETLEIR----SDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred cCeEEecc------------ccceEEEEEeec--------cCceeeeEeec----cceeEEEEcCCCCeEEEEEecceEE
Q ss_pred EEeCCCCCCCCC
Q 002614 492 TMGSAAYGQLGV 503 (900)
Q Consensus 492 ~wG~n~~GQLG~ 503 (900)
.|-.+...|+|.
T Consensus 546 f~d~~~~~q~~~ 557 (893)
T KOG0291|consen 546 FFDIKEAVQVGS 557 (893)
T ss_pred EEEhhhceeecc
No 263
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.25 E-value=1.1e+02 Score=34.37 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=15.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVE 817 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~ 817 (900)
...+++..+.|..|+.+|++.+.
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~ 196 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLED 196 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 45666777777777777776443
No 264
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=46.22 E-value=1.6e+02 Score=29.49 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=22.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
+-|.+..+.+..++...+..-+++...-.+.+.++..++++.++....|+.|++
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERAR 88 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333333444444444444444444444443
No 265
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=46.02 E-value=6.3e+02 Score=30.83 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.3
Q ss_pred EEEEEecCceEEEEecCCeEEEE
Q 002614 353 LSYISCGLWHTAVVTSAGHLFTF 375 (900)
Q Consensus 353 I~~VacG~~ht~aLT~~G~Vy~w 375 (900)
+.-...=.+|.++-|+.|.||..
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEE
Confidence 33344566889999999999983
No 266
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.85 E-value=57 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (900)
.+++|+..++++++.|+++-+.+..|+++++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666666666666666666666666665554
No 267
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.81 E-value=78 Score=40.10 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (900)
..+|+.+++++++.++++.+++..++ +++-++.+.-|++||
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l---~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEEL---KERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33344444444444444433333333 333333344444444
No 268
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.74 E-value=66 Score=34.03 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT---AIAEDEAEKC 851 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 851 (900)
.|||.-+|++.+-|+..-+.++.|...+++.|.+.- +-|.|++.|+
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kR 140 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKR 140 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666665555554433 3444444444
No 269
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.57 E-value=1.8e+02 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=29.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
.+.++..++....-+..|......+..+++....+|...-..+.
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~ 52 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELR 52 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777776666655444443
No 270
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=45.55 E-value=15 Score=27.20 Aligned_cols=29 Identities=34% Similarity=0.636 Sum_probs=12.2
Q ss_pred cccCCCceeecCcCChhhhhhccCCCCCCCcccccccccc
Q 002614 617 NCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 617 ~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
.|..||..|.+|=.. .+...+||+.|.+.
T Consensus 5 ~C~eC~~~f~dSyL~-----------~~F~~~VCD~CRD~ 33 (34)
T PF01286_consen 5 KCDECGKPFMDSYLL-----------NNFDLPVCDKCRDK 33 (34)
T ss_dssp E-TTT--EES-SSCC-----------CCTS-S--TTT-ST
T ss_pred hHhHhCCHHHHHHHH-----------HhCCccccccccCC
Confidence 455566666553322 35778899999764
No 271
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.41 E-value=83 Score=32.20 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002614 826 LEAELERTSKQLKT 839 (900)
Q Consensus 826 ~~~~~~~~~~~~~~ 839 (900)
++.+++.+..++..
T Consensus 125 ~~~ki~e~~~ki~~ 138 (177)
T PF07798_consen 125 QELKIQELNNKIDT 138 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 272
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.40 E-value=1.4e+02 Score=33.65 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccchhhHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDRNRQALL 884 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 884 (900)
..+|...|+.+.++|++... .+++|++|...+...-+.-.+.-|.=+|.|.+.||.....+++ .++..-.-|
T Consensus 2 ~~eEW~eL~~efq~Lqethr-------~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~-e~~~~i~~L 73 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHR-------SYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA-EERELIEKL 73 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh-hHHHHHHHH
Confidence 34566666666655555544 4555555555444444443333333445555555544444333 333333333
Q ss_pred HHHHHH
Q 002614 885 WEQLGE 890 (900)
Q Consensus 885 ~~~~~~ 890 (900)
-+++-+
T Consensus 74 ~~~Ik~ 79 (330)
T PF07851_consen 74 EEDIKE 79 (330)
T ss_pred HHHHHH
Confidence 444333
No 273
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=45.39 E-value=39 Score=31.41 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhhhcc
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA-EKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+..++.+.+++.++...+++|+...-.+--+.-...++-+.++..-.+.+ ...+-+...|.+|..||++|...
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777664444444333333333332222222 24566667777887765555433
No 274
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=45.37 E-value=1.8e+02 Score=28.13 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=25.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK 850 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (900)
+-|.+..+.+...+..-+..-+++.+.-.+-+.+++.++++.++....|++++++
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~ 86 (140)
T PRK07353 32 KVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADK 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333344455555555555555555555553
No 275
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=45.30 E-value=1.7e+02 Score=29.82 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=21.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (900)
+-|.++.+.+..++...+..-+++...-++-+.+++.++++.++....|+.++
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 45 DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444333333333333333444444444443333333333
No 276
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=45.27 E-value=1.3e+02 Score=33.48 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
...+....|+..||.+|..+...-...+.++..++..+++.-....+|.+.++.+..-|..|..+|.
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3455678888888888888888777777888888888877777777777777777776666665443
No 277
>smart00340 HALZ homeobox associated leucin zipper.
Probab=45.27 E-value=31 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=21.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSK 822 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
+-||+-+|.|.+|-.+|+.+|++|+..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 557888888888888888888877654
No 278
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=45.23 E-value=2.1e+02 Score=27.63 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=49.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---H----------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLE---A----------------ELERTSKQLKTVTAIAEDEAEKCKTANEVIK 859 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (900)
..+-+.|.+||+..+.|+++|..-+.+.+ . .+..++.++++.-..+-.+-+...+-.|.|+
T Consensus 29 ~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~ 108 (131)
T KOG1760|consen 29 NSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESIS 108 (131)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888887776655432 2 3456777777777777777777778888888
Q ss_pred HHHHhhhhh
Q 002614 860 SLTVQGLNS 868 (900)
Q Consensus 860 ~~~~~~~~~ 868 (900)
+--++||.+
T Consensus 109 ~~m~~LK~~ 117 (131)
T KOG1760|consen 109 ARMDELKKV 117 (131)
T ss_pred HHHHHHHHH
Confidence 877777754
No 279
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=45.22 E-value=49 Score=41.59 Aligned_cols=72 Identities=39% Similarity=0.392 Sum_probs=47.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ------------LKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (900)
.+...-..|..|+.+-+.-=+++..+|...+.++++.++. ++.-|.+|+ -|.|.-..-|-|-+|-.|
T Consensus 677 ~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~Eiaa-AA~KLAECQeTI~sLGkQ 755 (769)
T PF05911_consen 677 ELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAA-AAEKLAECQETIASLGKQ 755 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555557778888888888887653 222223322 155667778999999999
Q ss_pred hhhhh
Q 002614 865 GLNSK 869 (900)
Q Consensus 865 ~~~~~ 869 (900)
||.|+
T Consensus 756 LksLa 760 (769)
T PF05911_consen 756 LKSLA 760 (769)
T ss_pred HHhcC
Confidence 99998
No 280
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=45.19 E-value=1.4e+02 Score=29.28 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSK--SEHLEAELERTSKQLKTVTAIA-EDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 863 (900)
|..|+..++..++.+.+. ++.....++++.++++.+-... .+.+.+..++..+|.-+..
T Consensus 72 LLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ 133 (139)
T PF13935_consen 72 LLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555666666666666655 5555555566666665555444 4445555555555555443
No 281
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=44.79 E-value=1.2e+02 Score=33.07 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhhccCCCCccchhhH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKC-KTANEVIKSLTVQGLNSKVGLWNNQDRNRQA 882 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 882 (900)
...+-..+|+.....+.+.....+.+.++.+++++++-....++-.|. +.-.+|++.+..+..+++.-... ....|.
T Consensus 86 ~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~--~~~~~~ 163 (256)
T PF14932_consen 86 LYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSG--QQQNPP 163 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCC
Confidence 333333444444444555555555556666666666665555444433 34455555555555555542222 122355
Q ss_pred HHHHHH
Q 002614 883 LLWEQL 888 (900)
Q Consensus 883 ~~~~~~ 888 (900)
++|-|+
T Consensus 164 ~flsq~ 169 (256)
T PF14932_consen 164 VFLSQM 169 (256)
T ss_pred chhhhC
Confidence 666553
No 282
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=44.75 E-value=86 Score=38.82 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
+.--.+|+.....++.|+..|..+|..+|.|.|+++..+.-+
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677788888999999999999999888877665433
No 283
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.21 E-value=85 Score=39.86 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh
Q 002614 829 ELERTSKQLKTVTAIAEDEAE-KCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 867 (900)
+.++.+++-++.+..|.+|+. -.+.||+-++.+-.+||+
T Consensus 556 ~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 556 KKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443 223333333333334443
No 284
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.86 E-value=66 Score=36.58 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 811 KLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
..+.++..+..+.+....+.+...++.++.-..+..-..|...|+.+|..|..
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 33334444444444444444444444444444444445678888888888877
No 285
>PHA02713 hypothetical protein; Provisional
Probab=43.82 E-value=2.4e+02 Score=34.30 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=11.5
Q ss_pred eEEEEecCCeEEEEec
Q 002614 362 HTAVVTSAGHLFTFGD 377 (900)
Q Consensus 362 ht~aLT~~G~Vy~wG~ 377 (900)
+..+..-+|+||.+|-
T Consensus 344 ~~~~~~~~g~IYviGG 359 (557)
T PHA02713 344 RFSLAVIDDTIYAIGG 359 (557)
T ss_pred ceeEEEECCEEEEECC
Confidence 3344556789999995
No 286
>PRK14163 heat shock protein GrpE; Provisional
Probab=43.81 E-value=1.5e+02 Score=31.48 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
....+.|.+++..|++++++|+.+.....++.+.+++..+.-...+++-+ .-+.+++++-.|.+
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a-~~~~~~~LLpVlDn 102 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIA-VANLLSELLPVLDD 102 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHhH
Confidence 33346677788888888888877777777777777777655444443332 23555555555444
No 287
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=43.74 E-value=74 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
-+.|..||+.|.+++..|.+........++.++.+...|-
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777766666666666555443
No 288
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.66 E-value=5.9e+02 Score=29.67 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=41.2
Q ss_pred CCEEEEEe-CCcEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEee--ecCCCcEEEEEecCcEEEEEEeCCcEEEE
Q 002614 244 LDVHNIAC-GARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIE--ILSGVNVELVACGEYHTCAVTRSGDLYTW 320 (900)
Q Consensus 244 ~~I~~Ia~-G~~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~--~l~~~~I~~Va~G~~hs~aLT~dG~Vysw 320 (900)
.+|+.+.- ...+.++|+++|.|+..- -.|.. ....+..+. ...+.+|-.+..+.+-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 35666654 346888999999988873 22322 111111111 11122344456666678899999999988
Q ss_pred c
Q 002614 321 G 321 (900)
Q Consensus 321 G 321 (900)
-
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 289
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.60 E-value=7.8 Score=48.50 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=0.0
Q ss_pred cchhhhhHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Q 002614 796 DDSKQMNDSLN---QEIIKLRAQVEELTSK---SEHLEAELERTSKQLKTV--------------------TAIAEDEAE 849 (900)
Q Consensus 796 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 849 (900)
+.|++.|+.|. +|...||-++..|+++ ++..+.+++++++|+++. ..+..||..
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3444444455566554 445778888898887643 456677788
Q ss_pred hhhhHHHHHHHHHHhhhhhhccCCCCc
Q 002614 850 KCKTANEVIKSLTVQGLNSKVGLWNNQ 876 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 876 (900)
|..+.+.-|..+..|+.+|..+|-.-.
T Consensus 357 ~~~~~~~qle~~k~qi~eLe~~l~~~~ 383 (713)
T PF05622_consen 357 KARALKSQLEEYKKQIQELEQKLSEES 383 (713)
T ss_dssp ---------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777777766544
No 290
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=43.58 E-value=1.4e+02 Score=29.32 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----HHHHHHhhh--hHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAI-----AEDEAEKCK--TANEVIKS 860 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~ 860 (900)
.++|++..+.+.+|+.+++..++++..+.+.. ..++++++++-.+..-. ++-|.-+.+ +-..-=..
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68888888888888888887666665554443 23444444444333211 122222222 22222234
Q ss_pred HHHhhhhhhccCCC-CccchhhHHHHHHH
Q 002614 861 LTVQGLNSKVGLWN-NQDRNRQALLWEQL 888 (900)
Q Consensus 861 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 888 (900)
|..+|..|...|-. ++++.|-.-||-+|
T Consensus 112 L~~~le~l~~~l~~p~~~~~rl~El~a~l 140 (141)
T PF13874_consen 112 LRKRLEALEAQLNAPAQLKGRLNELWAQL 140 (141)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHh
Confidence 55577777777753 55888888888775
No 291
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=43.42 E-value=1.1e+02 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEH 825 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (900)
=+++.+.+......++.+++++.+...+
T Consensus 24 G~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 24 GKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777666655444
No 292
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.33 E-value=1.4e+02 Score=36.14 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=5.6
Q ss_pred EEEcCCcEEEEe
Q 002614 258 LVTKQGEIFSWG 269 (900)
Q Consensus 258 ~Lt~dG~Vy~wG 269 (900)
++-.||+++.-+
T Consensus 24 v~~~dg~~~~k~ 35 (652)
T COG2433 24 VILEDGEIVEKG 35 (652)
T ss_pred EEEecCcEEeeh
Confidence 333555555443
No 293
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=43.30 E-value=1.9e+02 Score=28.32 Aligned_cols=64 Identities=22% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCcc
Q 002614 810 IKLRAQVEELTSKSEHLEAELERTSKQLK----TVT----AIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQD 877 (900)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 877 (900)
..|++|+..+...|++.+.+.++..+.++ ... .....|-++. .|.++.|+.|++.+ +.||.|+.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r---~e~k~~l~~ql~qv-~~L~lgsE 94 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER---LEQKNQLLQQLEQV-QKLELGSE 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHS-TT-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hcCCCCCE
Confidence 45666777777888888877777666654 222 3333443333 45667777777775 56888763
No 294
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.16 E-value=1.3e+02 Score=33.74 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=33.4
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
.+.+.+..+.|.+|...|.++++.|.+..++.+.|++..+++.++.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777888888888888888888888877777666553
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.10 E-value=8.8e+02 Score=31.63 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=34.0
Q ss_pred cEEEEEecCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEECCCcceeeecCCeEEEEecC
Q 002614 479 DLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKG 548 (900)
Q Consensus 479 ~ht~aLT~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~n 548 (900)
.+.+.|+.+|++|+=+ ..+ ...+..+...+.|-++.|.+..+...=-+
T Consensus 592 ~~~~GLs~~~~Ly~n~-----------------~~l-----a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 592 RVLFGLSSNGRLYANS-----------------RLL-----ASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred eEEEEECCCCEEEECC-----------------EEE-----ecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 3788999999999622 112 24577888888888888887777766544
No 296
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.60 E-value=1.3e+02 Score=29.54 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002614 831 ERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (900)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (900)
+..++.+...+.+..+.-+|.+.=|+-+|.|.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 33445555666666666666666555555443
No 297
>PRK14146 heat shock protein GrpE; Provisional
Probab=42.53 E-value=1.4e+02 Score=31.80 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+.|.+|+..|++++++|+.+....-++++.+++..+.-...++..+- .+.+++++-.|.+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~-e~~~~~lLpv~Dn 116 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAV-KSLVSGFLNPIDN 116 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 345667788888888888888888888888888777666655555443 4666666666555
No 298
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=42.47 E-value=75 Score=32.96 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccchhh
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDRNRQ 881 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 881 (900)
+..|.+|+..+.+..++|...-+..+.+...+..+|+.++.-.+|=-.|..-|-.-+..|-.+..+|-++|++-..+++.
T Consensus 111 ~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~ 190 (205)
T KOG1003|consen 111 SEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEE 190 (205)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHH
Confidence 34566777777777777777777777777777777777777666555555556666666666777777777765555443
No 299
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=42.40 E-value=2.1e+02 Score=28.61 Aligned_cols=6 Identities=0% Similarity=-0.136 Sum_probs=2.5
Q ss_pred hhhccC
Q 002614 867 NSKVGL 872 (900)
Q Consensus 867 ~~~~~l 872 (900)
++++++
T Consensus 134 ~~a~ki 139 (164)
T PRK14471 134 EIAEKV 139 (164)
T ss_pred HHHHHH
Confidence 344443
No 300
>PRK15396 murein lipoprotein; Provisional
Probab=42.21 E-value=1.4e+02 Score=26.58 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
.|..+|+.|.++|..|.+........++.++.....|
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666665555555555555555554444433
No 301
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=41.97 E-value=1.7e+02 Score=31.50 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 002614 839 TVTAIAEDEAEK 850 (900)
Q Consensus 839 ~~~~~~~~~~~~ 850 (900)
+.++.|++|+++
T Consensus 90 ~i~~~A~~ea~~ 101 (246)
T TIGR03321 90 RLLDEAREEADE 101 (246)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 302
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.95 E-value=2.3e+02 Score=37.34 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=80.4
Q ss_pred EEEecCCeEEEEecCCCCCCCCCCCCCC--CcceeeeecCCCeEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEE
Q 002614 364 AVVTSAGHLFTFGDGSFGALGHGDHIST--SIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTW 441 (900)
Q Consensus 364 ~aLT~~G~Vy~wG~n~~GqLG~g~~~~~--~~P~~V~~l~~~~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~W 441 (900)
+.+|.|.+||.|-.++.+++-.=+.... ..-..|..-.|+-+.. ..|-+++. ..-+++..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvva--------------T~~ei~il 154 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVA--------------TPVEIVIL 154 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEec--------------ccceEEEE
Confidence 5678999999999888666543222111 1111111111211221 23777776 55677777
Q ss_pred eCCCC-CCCCCCCCCCcccceeecCCCCCCeeEEEe-cCcEEEEE-ecCCcEEEEeCCCC-----CCCCCC---------
Q 002614 442 GDGDK-GRLGHGDKEPRLFPECVAPLIDENICQVAC-GHDLSVAL-TTSGHVYTMGSAAY-----GQLGVP--------- 504 (900)
Q Consensus 442 G~n~~-GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~-G~~ht~aL-T~~G~Vy~wG~n~~-----GQLG~~--------- 504 (900)
|-... ...+....... -+|.. |-+-+.+. |++|+||.-|.+.+ .|.+.+
T Consensus 155 gV~~~~~~~~~~~f~~~--------------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Ki 220 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTS--------------FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKI 220 (1311)
T ss_pred EEEeccccCcccccccc--------------eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccc
Confidence 74321 11111111111 22222 33333333 67777777776531 111111
Q ss_pred -----CCCCcceeeecCC-cCCCCEEEEEECCCcc--eeeecCCeEEEEecCCCCCCC
Q 002614 505 -----VADGLVPTRVDGE-IAESFVEEVACGAYHV--AALTSTSKVYTWGKGANGQLG 554 (900)
Q Consensus 505 -----~~~~~~P~~v~~~-l~~~~V~~Ia~G~~Ht--~aLt~~G~Vy~WG~n~~GQLG 554 (900)
.-....|...... ...+.|.+|+.+.... .++++.|.|-+|=-+.+|.-|
T Consensus 221 clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 221 CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred cCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 0112345533222 2356799999999776 456778888888777666655
No 303
>PRK10132 hypothetical protein; Provisional
Probab=41.95 E-value=2.7e+02 Score=26.32 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=32.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTS-KSEHLEAELERTSKQLKTVTAIAED 846 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (900)
++....|.|..|+..|-+.+++|-. ....-..|++.++.+++.....+++
T Consensus 9 ~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~ 59 (108)
T PRK10132 9 DVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRA 59 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445557788888888887776653 3344446667777777776666654
No 304
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=41.93 E-value=1.5e+02 Score=33.21 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=46.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLE------------------AELERTSKQLKTVTAIAEDEAEKCKTANE 856 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (900)
+..+...-+.++.+|..|+.+|++|+..-+... ..+....+++.+++.....+..|...+-+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~ 155 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQS 155 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556666666655554442111 12234566666666666667777777777
Q ss_pred HHHHHHHhhhhhhccCC
Q 002614 857 VIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 857 ~~~~~~~~~~~~~~~l~ 873 (900)
-.+.+.++|.++.+++=
T Consensus 156 k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 156 KASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766543
No 305
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=41.86 E-value=1.5e+02 Score=31.18 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=27.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
++++..+....+|..+..+.+.|..-.+....|++.++++++.- ..+-...+.+|.-++.++.+|+++
T Consensus 38 emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y----~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 38 EMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY----EKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443321 111112233455555555555443
No 306
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.84 E-value=1.1e+02 Score=31.76 Aligned_cols=28 Identities=21% Similarity=0.117 Sum_probs=11.9
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhhhccCC
Q 002614 846 DEAEKCKTANEVIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 873 (900)
++...+.+.-+=++.|..+++.+.+.|-
T Consensus 100 ~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 100 EESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 307
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.81 E-value=2e+02 Score=31.58 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
+..||..|.+||+++..+.+....|+.++++.+
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei 82 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333
No 308
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.64 E-value=1.3e+02 Score=37.48 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCC--CCccchhhHH
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLW--NNQDRNRQAL 883 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~ 883 (900)
..|++.|..|+..+.+.+++...++..+++.++.+..+|.|=..+..+|.+=+-++..+|-.|-..+. ||.-.+|-.|
T Consensus 397 ~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmL 476 (717)
T PF09730_consen 397 ESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVML 476 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHH
Confidence 34445555555555555555566788888888888888888888889998888888887776654432 3444455443
No 309
>PLN02436 cellulose synthase A
Probab=41.60 E-value=16 Score=46.74 Aligned_cols=53 Identities=19% Similarity=0.564 Sum_probs=39.8
Q ss_pred ccccCCCCCCCCcccc---cccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 599 HSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 599 ~s~C~~C~~~Fsf~r~---rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
..+|..|+...+.+.. ---|.-|+..+|..|+.. ........|..|+...++.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey---------er~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY---------ERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhh---------hhhcCCccCcccCCchhhc
Confidence 4478888887665533 245889999999999863 2456778999999998754
No 310
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.48 E-value=1.2e+02 Score=34.77 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 828 AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
.+++..-++.+++.....+.-+|.+.|-+-|..+|.+|.++.|.|
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEEL 310 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444445555555556666677777777777776666655544
No 311
>PHA02047 phage lambda Rz1-like protein
Probab=41.48 E-value=1.7e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 813 RAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
+..+++|+.+.|..+.++..++++++..-
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~ 61 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVE 61 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666667777777766544
No 312
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.46 E-value=63 Score=40.46 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (900)
+-|+..-+.+.+|+.++++..+.|++.++.+..+++++.++
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666666555555444
No 313
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.46 E-value=1.8e+02 Score=30.39 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
|.+++.+|++++.+|+.+....-++++.+++..+.-...+++ .+.-+.+++++-.+.+
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~-~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEK-YRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777776655544443 3345677777766664
No 314
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.42 E-value=81 Score=27.53 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002614 812 LRAQVEELTSKSEHLEA 828 (900)
Q Consensus 812 ~~~~~~~~~~~~~~~~~ 828 (900)
|..+|..+......+..
T Consensus 9 LE~ki~~aveti~~Lq~ 25 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQM 25 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 315
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.24 E-value=1.9e+02 Score=28.51 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=37.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h----HHHHHHHHHHhhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK--T----ANEVIKSLTVQGLNS 868 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~ 868 (900)
.+.+...|+.|.+....++.+++.++.+...+-.+++.++....+.+....+-+.+.. + -+.-++....+..+|
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555555555555555555555555444443333332221 1 122233334456667
Q ss_pred hccCCCC
Q 002614 869 KVGLWNN 875 (900)
Q Consensus 869 ~~~l~~~ 875 (900)
++++..|
T Consensus 116 ae~fl~g 122 (150)
T PF07200_consen 116 AEEFLDG 122 (150)
T ss_dssp C-S-SSS
T ss_pred HHHHhCC
Confidence 7777665
No 316
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.13 E-value=1.3e+02 Score=26.24 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002614 816 VEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
++.|+.+....+.++..+++++.
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 317
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.96 E-value=1.4e+02 Score=30.65 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=12.5
Q ss_pred HhhhhHHHHHHHHHHhhhhhhc
Q 002614 849 EKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
-|..++++++++|..+|-.+.|
T Consensus 123 kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 123 KKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666665554443
No 318
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.89 E-value=1.5e+02 Score=31.70 Aligned_cols=75 Identities=9% Similarity=0.180 Sum_probs=40.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
.+.+..+...|.+++..+.+.+++|....+.-......+..+|+......++--.+...|..-++.|..++..+-
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666655555555554555555555555554444444555555555555444443
No 319
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=40.86 E-value=1.1e+02 Score=30.90 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHH
Q 002614 838 KTVTAIAEDEAEKCKTANEVIK 859 (900)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~ 859 (900)
|...++-..||+||.++.|--.
T Consensus 116 kk~asqYQkEAeKCnsgmeTCE 137 (176)
T PF06364_consen 116 KKMASQYQKEAEKCNSGMETCE 137 (176)
T ss_pred HHHHHHHHHHHHhhcchHHHHH
Confidence 3344555789999999888654
No 320
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=40.77 E-value=94 Score=40.96 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=9.8
Q ss_pred ccccCCC--CCCCCceEEEEE
Q 002614 29 TFQRYPR--PEKEYQSFSLIY 47 (900)
Q Consensus 29 ~f~~~~~--~~~~~~~fsii~ 47 (900)
.|+.|.. ..+-...|++|+
T Consensus 9 nf~s~~~~~~i~f~~~~~~i~ 29 (1164)
T TIGR02169 9 NFKSFGKKKVIPFSKGFTVIS 29 (1164)
T ss_pred CeeeECCeeEEeecCCeEEEE
Confidence 4566653 122234577777
No 321
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=40.62 E-value=1.9e+02 Score=31.41 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q 002614 838 KTVTAIAEDEAEK 850 (900)
Q Consensus 838 ~~~~~~~~~~~~~ 850 (900)
++.++.|++|+++
T Consensus 89 ~~il~~A~~ea~~ 101 (250)
T PRK14474 89 QHLLNEAREDVAT 101 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555443
No 322
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.62 E-value=1.4e+02 Score=36.63 Aligned_cols=50 Identities=30% Similarity=0.423 Sum_probs=38.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAE 845 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (900)
+......+...+|+..|+.|++.|..+++..+.+++.++..++.+.....
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455678899999999999999999999999988888776554443
No 323
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.58 E-value=1.3e+02 Score=27.21 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (900)
+|+.+|+++.+.|+..-...+++++.++-+- =-||..+.-....||..|-
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq------knee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKNAKVRQ------KNEENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHhhccCCHHHHHHHHH
Confidence 3344444444444444333444443332222 2356667777778887765
No 324
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=40.38 E-value=1.2e+02 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 826 LEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
.+.++..++.+.++....|+++++
T Consensus 56 ~~~~l~~a~~ea~~i~~~a~~~a~ 79 (132)
T PF00430_consen 56 YEEKLAEAREEAQEIIEEAKEEAE 79 (132)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333
No 325
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.19 E-value=1.6e+02 Score=34.88 Aligned_cols=15 Identities=33% Similarity=0.404 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhh
Q 002614 837 LKTVTAIAEDEAEKC 851 (900)
Q Consensus 837 ~~~~~~~~~~~~~~~ 851 (900)
.+++...|.+|+++.
T Consensus 84 ~~~~~~~A~~ea~~i 98 (445)
T PRK13428 84 AEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 326
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=39.99 E-value=2.1e+02 Score=28.54 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
-+.+.++...|..|+....+..+.+++|+.+....++.-.....+--.+++++...++.+...++.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 3567778888888888888888888888888877777777777777777777777777766654433
No 327
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.11 E-value=1.2e+02 Score=35.26 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=3.3
Q ss_pred ccccccccC
Q 002614 742 LQMGRIYSP 750 (900)
Q Consensus 742 ~~~~~~~~~ 750 (900)
.+++..+.|
T Consensus 125 ~r~g~~p~~ 133 (420)
T COG4942 125 QRSGRNPPP 133 (420)
T ss_pred HhccCCCCc
Confidence 333333333
No 328
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=39.09 E-value=88 Score=34.02 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSK 822 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
+..|+.|.+|++.|+.++.+++..
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhch
Confidence 677888888888888877776654
No 329
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.00 E-value=1.6e+02 Score=32.55 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=67.0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
.+.+|+..|++|.|.+.+-++++.+|+.+.... ..-++-.+..+..|--..+|.-.......+-+.--+.+-.
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqe 217 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQE 217 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 366799999999999999999888887764432 2334555666666666666666666676766666666667
Q ss_pred hhhccCCCCccchhhHHHHHHHHHhh
Q 002614 867 NSKVGLWNNQDRNRQALLWEQLGEAA 892 (900)
Q Consensus 867 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 892 (900)
-|-|||..-+- .-.||-.||-+|-
T Consensus 218 s~eERL~Qlqs--EN~LLrQQLddA~ 241 (305)
T PF14915_consen 218 SLEERLSQLQS--ENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 77777765443 3356767776654
No 330
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.89 E-value=1.7e+02 Score=30.25 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
.++........++..|++++..|+.++..++.+|+...+.+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556666666666666666666665554444
No 331
>PF15409 PH_8: Pleckstrin homology domain
Probab=38.88 E-value=43 Score=30.46 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 37 EKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 37 ~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
.++.++|.|-=|..---|=|.|++|++.||..|+.
T Consensus 53 ~~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 53 NKKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred cCCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 34567777777888889999999999999999985
No 332
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.80 E-value=1.3e+02 Score=38.50 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCCccc
Q 002614 829 ELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNNQDR 878 (900)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 878 (900)
+++...+++.+..+...+-.+|..++..-.+.+.++|++...++-....+
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~ 886 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTE 886 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333444444444555555566666666666666666666666544433
No 333
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.68 E-value=98 Score=37.70 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHH---hhhhhhccCCCC
Q 002614 851 CKTANEVIKSLTV---QGLNSKVGLWNN 875 (900)
Q Consensus 851 ~~~~~~~~~~~~~---~~~~~~~~l~~~ 875 (900)
.-+|+||+..|.. +|+++.+++|.=
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l 216 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKL 216 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5578888888776 677778888763
No 334
>PHA02790 Kelch-like protein; Provisional
Probab=38.58 E-value=1.9e+02 Score=34.38 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred cEEEEEEcCCcEEEEeCCCCCccCCCCCCcccccEEeeecCCC--cEEEEEecCcEEEEEEeCCcEEEEcCCCCCCCccC
Q 002614 254 RHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGV--NVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLG 331 (900)
Q Consensus 254 ~ht~~Lt~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~--~I~~Va~G~~hs~aLT~dG~VyswG~n~~~~GqLG 331 (900)
.|.....-++.||+.| |.........-.......+. .+..+.....+..++.-+|.||..|........--
T Consensus 263 ~~~~~~~~~~~lyviG-------G~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ 335 (480)
T PHA02790 263 HMCTSTHVGEVVYLIG-------GWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVER 335 (480)
T ss_pred CCcceEEECCEEEEEc-------CCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEE
Q ss_pred CCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCCeEEEEecCCCCCCCCCCCCCCCcceeeeecCCCeEEEEEec
Q 002614 332 HGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCG 411 (900)
Q Consensus 332 ~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG 411 (900)
.......|.+..-.. ....+..+..-+|+||..| |.-+.........|..-.--.......--.+
T Consensus 336 ydp~~n~W~~~~~l~-----------~~r~~~~~~~~~g~IYviG----G~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~ 400 (480)
T PHA02790 336 WFHGDAAWVNMPSLL-----------KPRCNPAVASINNVIYVIG----GHSETDTTTEYLLPNHDQWQFGPSTYYPHYK 400 (480)
T ss_pred EECCCCeEEECCCCC-----------CCCcccEEEEECCEEEEec----CcCCCCccEEEEeCCCCEEEeCCCCCCcccc
Q ss_pred CceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCeeEEEecCcEEEEEecCCcEE
Q 002614 412 VWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVY 491 (900)
Q Consensus 412 ~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLT~~G~Vy 491 (900)
|.++. -+|++|+.|....-.--..+.-....|...+ ..+.-+..-+|+||
T Consensus 401 --~~~~~---------------~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~-------------r~~~~~~v~~~~IY 450 (480)
T PHA02790 401 --SCALV---------------FGRRLFLVGRNAEFYCESSNTWTLIDDPIYP-------------RDNPELIIVDNKLL 450 (480)
T ss_pred --ceEEE---------------ECCEEEEECCceEEecCCCCcEeEcCCCCCC-------------ccccEEEEECCEEE
Q ss_pred EEe
Q 002614 492 TMG 494 (900)
Q Consensus 492 ~wG 494 (900)
+.|
T Consensus 451 viG 453 (480)
T PHA02790 451 LIG 453 (480)
T ss_pred EEC
No 335
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.51 E-value=12 Score=37.77 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=24.0
Q ss_pred ceeeeCCHHHHHHHHHHHHHHHhcCCC
Q 002614 52 LDLICKDKDEAEVWLVGLKALITRGTH 78 (900)
Q Consensus 52 LdLi~~~~~ea~~W~~gl~~l~~~~~~ 78 (900)
.||++...+|...|+.|||.||.-.++
T Consensus 114 ~~L~t~h~~E~~~WmvGVKRLI~~~r~ 140 (157)
T PF07304_consen 114 VDLMTDHVDECGNWMVGVKRLIAMARN 140 (157)
T ss_dssp HHHHHSSHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHhccHHHhhhHHHHHHHHHHHHHh
Confidence 589999999999999999999986553
No 336
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.42 E-value=54 Score=31.42 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=29.0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (900)
++++|++.-|.|+-+|..|+.|-+.+..+-+....+|++
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888877777766665555554
No 337
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.39 E-value=23 Score=44.20 Aligned_cols=39 Identities=21% Similarity=0.680 Sum_probs=25.6
Q ss_pred ccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccc
Q 002614 601 VCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
.|..|...+++.+.. +...|+.|-.. ......|++|-..
T Consensus 446 ~Cp~Cd~~lt~H~~~------~~L~CH~Cg~~-----------~~~p~~Cp~Cgs~ 484 (730)
T COG1198 446 ECPNCDSPLTLHKAT------GQLRCHYCGYQ-----------EPIPQSCPECGSE 484 (730)
T ss_pred cCCCCCcceEEecCC------CeeEeCCCCCC-----------CCCCCCCCCCCCC
Confidence 355555555543322 67889989652 3566789999987
No 338
>PF15294 Leu_zip: Leucine zipper
Probab=38.26 E-value=1.4e+02 Score=32.81 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
|.+.-+-|.+|..+|++++..+..+|-.--.|-.+.+.+|+++-.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888887777777776554444444444444443
No 339
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.14 E-value=1e+02 Score=35.76 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhhccCCCC
Q 002614 855 NEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 855 ~~~~~~~~~~~~~~~~~l~~~ 875 (900)
.+-++.|.++|.+.+..+||-
T Consensus 102 ~~~~~~l~~el~~~~~~ipN~ 122 (455)
T KOG2509|consen 102 EEDESKLEDELYEVLLQIPNI 122 (455)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 345667888999999999874
No 340
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.09 E-value=2.6e+02 Score=29.36 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=54.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHhhhh
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA--------EKCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 867 (900)
..++.....+.+|+..|+-+-+.|.++++..+.|...+.++...++.-+...+ .|.++..+.+..-.+||.+
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888888888888888888888888888877776665544 3455556666666667776
Q ss_pred hhcc
Q 002614 868 SKVG 871 (900)
Q Consensus 868 ~~~~ 871 (900)
+...
T Consensus 169 vl~~ 172 (201)
T PF13851_consen 169 VLAA 172 (201)
T ss_pred HHHH
Confidence 6543
No 341
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.06 E-value=1.2e+02 Score=40.68 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
-...+.|.++++.+..++..+..+.++.+.++++..++++++-..+..-....+.++.=++.|..
T Consensus 599 ~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 663 (1201)
T PF12128_consen 599 AASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKN 663 (1201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455666666666666666666666666666666665555444443333333333333333333
No 342
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.03 E-value=67 Score=31.09 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (900)
.++|.+.+-.|.|||.+|+..+..+...-+....+.+++
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777777776666555544444443333
No 343
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.95 E-value=3.2e+02 Score=27.56 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHhhhhh
Q 002614 850 KCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~ 868 (900)
+.+...++++.|....++|
T Consensus 97 ~~~~ea~L~~~~~~~~~~~ 115 (155)
T PRK06569 97 KKNLEQDLKNSINQNIEDI 115 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555544444
No 344
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.85 E-value=74 Score=29.90 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=37.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
..+.++.-|.++.|+.++.+|++...++|+.+..++-++++..+
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578899999999999999999999999998888777776654
No 345
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=37.71 E-value=2.1e+02 Score=29.90 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (900)
-.|-+|.+..++.|+...|..+.+||.+++.+|+|-.++
T Consensus 66 a~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 66 APEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555566777778888999999999999876544
No 346
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=37.67 E-value=2.8e+02 Score=33.95 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCCCCCCCCCCCCCcccceeecCCCCCCee---EEEecCcEEEEEecCCcEEEEeC
Q 002614 434 SCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENIC---QVACGHDLSVALTTSGHVYTMGS 495 (900)
Q Consensus 434 ~~G~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~---~Ia~G~~ht~aLT~~G~Vy~wG~ 495 (900)
-++.||+.|..+. .... .. .....+...... .......+.-+..-+|++|+-|.
T Consensus 474 ~~~~iYvvGG~~~-~~~~-~~------VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 474 LNGKIYVVGGFDG-TSAL-SS------VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ECCEEEEECCccC-CCcc-ce------EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4699999996553 1100 01 111111122222 23446667777778999999996
No 347
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=37.62 E-value=2.6e+02 Score=28.19 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 002614 839 TVTAIAEDEAE 849 (900)
Q Consensus 839 ~~~~~~~~~~~ 849 (900)
++.+.|.+|++
T Consensus 95 ~~~~~A~~ea~ 105 (167)
T PRK14475 95 EAKEKLEEQIK 105 (167)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 348
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=37.58 E-value=2.8e+02 Score=27.09 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEA 848 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (900)
|.+..+....++...+..-+.+.+.-++-+.+++.+++..++....|+.++
T Consensus 24 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a 74 (147)
T TIGR01144 24 IETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRG 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333333333444444444443333333333
No 349
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=37.50 E-value=1.3e+02 Score=27.97 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 814 AQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
.||..|.+.-+.|.++|.+.+.+++ +--+-|+++-..|..|-.||
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555544 55555677777777777665
No 350
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.50 E-value=8.9 Score=31.08 Aligned_cols=28 Identities=36% Similarity=0.892 Sum_probs=16.8
Q ss_pred cCCCCCCCCcc------cccccccCCCceeecCc
Q 002614 602 CSSCHNPFGFR------RKRHNCYNCGLVFCKAC 629 (900)
Q Consensus 602 C~~C~~~Fsf~------r~rh~C~~CG~~~C~sC 629 (900)
|.+|..+|.-. ..+..|..|...||..|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 67888887754 35788999999999888
No 351
>PLN02189 cellulose synthase
Probab=37.49 E-value=18 Score=46.14 Aligned_cols=54 Identities=26% Similarity=0.671 Sum_probs=39.8
Q ss_pred CccccCCCCCCCCcccc---cccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 598 DHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 598 d~s~C~~C~~~Fsf~r~---rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
...+|..|+...+.+.. ---|.-|+..+|..|+... .......|..|+...++.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye---------r~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE---------RREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhh---------hhcCCccCcccCCchhhc
Confidence 34478888887664433 3569999999999998632 456678899999988754
No 352
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.49 E-value=1.2e+02 Score=35.45 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=35.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIK 859 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (900)
=+.++..+.|.+++.+|++++++|..+.++.. +.+++++++..+..-.-.+.+-++++|+
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777888888888888888887755444 4555555544444333333344444443
No 353
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.48 E-value=1.3e+02 Score=28.88 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHhhhhHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA----------------------EDEAEKCKTANE 856 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 856 (900)
...-+.+..+.++++.+++.+..+.+..+.++++++..++|.-.+- .+-..|....+.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~ 85 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLEL 85 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3344455667777777888888888888888888777766543321 222234444556
Q ss_pred HHHHHHHhhhhhhccCCCCccchh
Q 002614 857 VIKSLTVQGLNSKVGLWNNQDRNR 880 (900)
Q Consensus 857 ~~~~~~~~~~~~~~~l~~~~~~~~ 880 (900)
=|+.|..|.+.+.++|-.-+..-|
T Consensus 86 ~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 86 RSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777666654444333
No 354
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.43 E-value=1.2e+02 Score=32.05 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV---TAIAEDEAEKC 851 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 851 (900)
+...|+.+++|..+|++++++...+-+..+.+....+|+.++. ...+.||.+|.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444555666666666666655555555555555555554433 22344444443
No 355
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.33 E-value=2e+02 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
+..+.++|+.+.+.|.++-...+.++.+....++|..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766666655544
No 356
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=37.25 E-value=12 Score=27.85 Aligned_cols=43 Identities=30% Similarity=0.669 Sum_probs=26.2
Q ss_pred cCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccc
Q 002614 602 CSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTK 656 (900)
Q Consensus 602 C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~ 656 (900)
|..|...+ ........||+.||..|....... ..+.|+.|...
T Consensus 2 C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~~~~---------~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEF---REPVVLLPCGHVFCRSCIDKWLKS---------GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhh---hCceEecCCCChhcHHHHHHHHHh---------CcCCCCCCCCc
Confidence 55666655 223334469999999997643221 34568877654
No 357
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=36.83 E-value=67 Score=28.48 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=33.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
++...+.-+.|.+..-++.-.++.|..++...+..+|.+++++++..
T Consensus 32 i~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~EkLdel~ 78 (80)
T PF11488_consen 32 IDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQEKLDELL 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHhHHHHh
Confidence 34444455555555555555688899999999999999988888764
No 358
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.77 E-value=5.2e+02 Score=30.11 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred ecCcEEEEEEeCCcEEEEcCCCCCCCccCCCCCcccccceeeccCCCCCcEEEEEecCceEEEEecCC-eEEEEecCCCC
Q 002614 303 CGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAG-HLFTFGDGSFG 381 (900)
Q Consensus 303 ~G~~hs~aLT~dG~VyswG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~VacG~~ht~aLT~~G-~Vy~wG~n~~G 381 (900)
+-..|.++=..|+.++.|+.+ .........|-.-.-|-+++|.|| .|+..+
T Consensus 322 pDg~~~V~Gs~dr~i~~wdlD-----------------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~----- 373 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTIIMWDLD-----------------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVT----- 373 (519)
T ss_pred cCCceeEecCCCCcEEEecCC-----------------------cchhhcccccccceeEEEEEcCCCcEEEEEe-----
Q ss_pred CCCCCCCCCCCcceeeeecCCC-----eEEEEEecCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCC
Q 002614 382 ALGHGDHISTSIPREVETLRGL-----RTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP 456 (900)
Q Consensus 382 qLG~g~~~~~~~P~~V~~l~~~-----~I~~IacG~~hs~al~~~~~~~~~~~~~~~~~G~Vy~WG~n~~GQLG~g~~~~ 456 (900)
.+......+.+-..-.+. .|.++.-..+.-++|+.- .+.+++.|-.-+
T Consensus 374 ----~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL------------~~qei~LWDl~e----------- 426 (519)
T KOG0293|consen 374 ----VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL------------QDQEIHLWDLEE----------- 426 (519)
T ss_pred ----cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc------------ccCeeEEeecch-----------
Q ss_pred cccceeecCCCCCC-----eeEEEecCcEEEEE--ecCCcEEEEeCCCCCCCCCCCCCCcceeeecCCcCCCCEEEEEEC
Q 002614 457 RLFPECVAPLIDEN-----ICQVACGHDLSVAL--TTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACG 529 (900)
Q Consensus 457 ~~~P~~V~~l~~~~-----I~~Ia~G~~ht~aL--T~~G~Vy~wG~n~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Ia~G 529 (900)
+..|....+.+ |..-..|.+-.++. .+|++||.|-.-. ++.-..+.+--...+++.-.--
T Consensus 427 ---~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s----------gkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 427 ---NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS----------GKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred ---hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC----------CceeEeecCCcceeeEEecCCC
Q ss_pred CCcceee-ecCCeEEEEecCCCCC
Q 002614 530 AYHVAAL-TSTSKVYTWGKGANGQ 552 (900)
Q Consensus 530 ~~Ht~aL-t~~G~Vy~WG~n~~GQ 552 (900)
.-+.+|= .+||.|-.||-..+.+
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred CHHHhhccCCCCeEEEecCCcccc
No 359
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=36.77 E-value=3.6e+02 Score=28.01 Aligned_cols=59 Identities=27% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQG 865 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (900)
|+-|=..||+....|...-.+...+|-....++-+... .-|+++-+-.|++||.|..||
T Consensus 35 LELESidLrEks~~L~~lL~~ns~~L~~~~~~Ln~~l~--~~~~s~~~~ik~~i~~l~~~i 93 (190)
T PF09074_consen 35 LELESIDLREKSSKLINLLNQNSKELCSVQEQLNELLN--SIEKSSNEDIKKLIKSLGNQI 93 (190)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHH
Confidence 34455556666666666655555555555555544431 223677788888888888744
No 360
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.76 E-value=1.7e+02 Score=32.75 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=48.5
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHhh----hhHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAE----LERTSKQLKTVTAIA---EDEAEKC----KTANEVIKSL 861 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~ 861 (900)
...+.|.++...|.+|-.+||.++..|.......+.+ +..+-+++.+|-..+ .+|-+++ .-=-|=|-+|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999888887544332222 233455655554332 3343333 2234556667
Q ss_pred HHhhhhhhcc
Q 002614 862 TVQGLNSKVG 871 (900)
Q Consensus 862 ~~~~~~~~~~ 871 (900)
.+|+-++..|
T Consensus 240 lsqivdlQ~r 249 (306)
T PF04849_consen 240 LSQIVDLQQR 249 (306)
T ss_pred HHHHHHHHHH
Confidence 7766665444
No 361
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=36.68 E-value=60 Score=30.71 Aligned_cols=35 Identities=17% Similarity=0.543 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 002614 41 QSFSLIYNDRSLDLICKDKDEAEVWLVGLKALITR 75 (900)
Q Consensus 41 ~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~l~~~ 75 (900)
..|=|-=.++-+.|-|.|..|-++|+.|++.|+..
T Consensus 71 ~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 71 RYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred EEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 34444447788999999999999999999999875
No 362
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.50 E-value=56 Score=36.17 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=8.5
Q ss_pred chhhhhHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQ 815 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~ 815 (900)
++++.|+.|.+|+.+|+++
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 363
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.37 E-value=1e+02 Score=27.09 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002614 814 AQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKS 860 (900)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (900)
.|++..-++-+.++.|.+.....+++..+-|+-+-=--|+.+.||+-
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46667777888889999999999999999998887778899999874
No 364
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=36.24 E-value=62 Score=28.10 Aligned_cols=39 Identities=33% Similarity=0.446 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (900)
+|+++-+.-.+|-..|++||.+|.++-...+..++++.+
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs~ 70 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLSQ 70 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 365
>PHA03098 kelch-like protein; Provisional
Probab=36.22 E-value=4.4e+02 Score=31.54 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=12.1
Q ss_pred CcEEEEEecCCcEEEEeCC
Q 002614 478 HDLSVALTTSGHVYTMGSA 496 (900)
Q Consensus 478 ~~ht~aLT~~G~Vy~wG~n 496 (900)
..|+++ .-+|++|++|..
T Consensus 381 ~~~~~~-~~~~~iYv~GG~ 398 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGGI 398 (534)
T ss_pred ccceEE-EECCEEEEECCc
Confidence 345544 457899999963
No 366
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=73 Score=31.67 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=39.2
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 789 RSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 789 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
++....++.|++..+.|+..+++|+..++.|.++.+....+++...++..
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888888888888888888888888888888877766654
No 367
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.15 E-value=98 Score=27.63 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEA 828 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (900)
+...+.|.+|+..||..+..|..+.+....
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~ 44 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKE 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777777766655555444333
No 368
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.12 E-value=2.2e+02 Score=34.07 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc----cCCCCccchh
Q 002614 816 VEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV----GLWNNQDRNR 880 (900)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 880 (900)
+..|..+-+.|-++|+.+.++++..-.+|..-|++...|+|-=.+|...++.+.. .|||-.+--|
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AEr 658 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAER 658 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHH
Confidence 5577777788888888899999988888888888999999999999988887764 3666555444
No 369
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=35.81 E-value=14 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=27.0
Q ss_pred cCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccc
Q 002614 602 CSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCF 654 (900)
Q Consensus 602 C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~ 654 (900)
|..|...|.- ..+---..||..||..|..... ....+|+.|.
T Consensus 2 C~~C~~~~~~-~~~~~l~~CgH~~C~~C~~~~~----------~~~~~CP~C~ 43 (44)
T PF14634_consen 2 CNICFEKYSE-ERRPRLTSCGHIFCEKCLKKLK----------GKSVKCPICR 43 (44)
T ss_pred CcCcCccccC-CCCeEEcccCCHHHHHHHHhhc----------CCCCCCcCCC
Confidence 6677777721 2223345899999999976432 4456677764
No 370
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=35.81 E-value=3.5e+02 Score=27.88 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=59.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT---AIAED--EAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
..|....+.|.+|+.+|+-.-+.|...-++.-++-+...+.+++++ ..++- |-+|-..|-++-..|=+|--.|||
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAE 120 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAE 120 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777778877776444443333333333333333333333 23332 234556677888888888888999
Q ss_pred cCCCCccchhhHHHHHHHHHhhhhe
Q 002614 871 GLWNNQDRNRQALLWEQLGEAALKL 895 (900)
Q Consensus 871 ~l~~~~~~~~~~~~~~~~~~~~~~~ 895 (900)
|.-+-.--+|+.-.---|-+-.-||
T Consensus 121 kIV~QaiDtR~l~vlPiLt~viQ~L 145 (228)
T PRK06800 121 KIVNQAVDTRLLDVLPILTGIVQTL 145 (228)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 9888877888776555555544444
No 371
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.68 E-value=61 Score=30.94 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.9
Q ss_pred ceEEEEE--cCCCceeeeCCHHHHHHHHHHHHHHHhc
Q 002614 41 QSFSLIY--NDRSLDLICKDKDEAEVWLVGLKALITR 75 (900)
Q Consensus 41 ~~fsii~--~~~sLdLi~~~~~ea~~W~~gl~~l~~~ 75 (900)
.+|-|+. +...+-|-|+++||-+.|+..|..-+++
T Consensus 77 ~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 77 YGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 5788999 3469999999999999999999988876
No 372
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=35.51 E-value=2.2e+02 Score=28.33 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002614 829 ELERTSKQLKTVTAIAE 845 (900)
Q Consensus 829 ~~~~~~~~~~~~~~~~~ 845 (900)
+++.++++.++....|+
T Consensus 62 ~L~~A~~ea~~ii~~A~ 78 (159)
T PRK09173 62 KRKEAEKEAADIVAAAE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 373
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=35.43 E-value=2.4e+02 Score=29.47 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAE 829 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (900)
+...+.-+.+++..+.+|.++.++.++.-+.+
T Consensus 51 ~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 51 IENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777776665554433
No 374
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.37 E-value=1.4e+02 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCCCceEEEEEcC-----CCceeeeCCHHHHHHHHHHHHHHHh
Q 002614 37 EKEYQSFSLIYND-----RSLDLICKDKDEAEVWLVGLKALIT 74 (900)
Q Consensus 37 ~~~~~~fsii~~~-----~sLdLi~~~~~ea~~W~~gl~~l~~ 74 (900)
..+.+.|.|.+++ .+.-|-|.|.++=+.|+.-|+.|+.
T Consensus 71 ~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 71 EGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 4568999999944 3667999999999999999999875
No 375
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.26 E-value=1.1e+02 Score=27.79 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhhhhHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED----------------------EAEKCKTANEVIKSLT 862 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 862 (900)
+..++..|+.+...+..+-...+.++++++..++|...+-.+ --++.+..++-|+.|.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhccC
Q 002614 863 VQGLNSKVGL 872 (900)
Q Consensus 863 ~~~~~~~~~l 872 (900)
.+++.+.++|
T Consensus 83 ~~~~~l~~~l 92 (106)
T PF01920_consen 83 KQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 376
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=35.13 E-value=1.7e+02 Score=38.79 Aligned_cols=18 Identities=28% Similarity=0.376 Sum_probs=10.3
Q ss_pred CCccchhhHHHHHHHHHhh
Q 002614 874 NNQDRNRQALLWEQLGEAA 892 (900)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~ 892 (900)
-+...|| .++=.||-+|.
T Consensus 231 ~~E~~tr-~~Id~~L~~aG 248 (1123)
T PRK11448 231 LSEEETR-ILIDQQLRKAG 248 (1123)
T ss_pred CCHHHHH-HHHHHHHHHCC
Confidence 3345577 56666666554
No 377
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.96 E-value=2.1e+02 Score=30.26 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=8.2
Q ss_pred cchhhhhHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRA 814 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~ 814 (900)
..+++..+.|.+|+..++.
T Consensus 96 p~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444433
No 378
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.91 E-value=1.9e+02 Score=28.38 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002614 835 KQLKTVTAIAEDEAE 849 (900)
Q Consensus 835 ~~~~~~~~~~~~~~~ 849 (900)
.+++.++..+-+|++
T Consensus 99 ~~L~~~~~e~eeeSe 113 (150)
T PF07200_consen 99 ARLQAAASEAEEESE 113 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555544
No 379
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.84 E-value=2.9e+02 Score=25.49 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002614 801 MNDSLNQEIIKLRAQVEELTSK 822 (900)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
..+.+..+|.+++..|..|...
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l 30 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKL 30 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444443
No 380
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=34.82 E-value=2.4e+02 Score=28.90 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002614 840 VTAIAEDE 847 (900)
Q Consensus 840 ~~~~~~~~ 847 (900)
....|..|
T Consensus 117 ~~~~A~~e 124 (181)
T PRK13454 117 AIAKADAE 124 (181)
T ss_pred HHHHHHHH
Confidence 33333333
No 381
>PF14282 FlxA: FlxA-like protein
Probab=34.61 E-value=3.3e+02 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSK----SEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 841 (900)
...-+.|++.++.|+.|+.+|..- .+....+++.++.+|...-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~Lq 64 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQ 64 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666555551 1333344444444444433
No 382
>PRK13694 hypothetical protein; Provisional
Probab=34.58 E-value=1.2e+02 Score=27.13 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002614 813 RAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKS 860 (900)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (900)
..|.+..-++-|.+++|.+.....+++..+-|+-+-=--|+-+.|||-
T Consensus 11 ~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~l 58 (83)
T PRK13694 11 KEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 347777778888899999999999999999998887778888988874
No 383
>PRK06746 peptide chain release factor 2; Provisional
Probab=34.54 E-value=1.2e+02 Score=34.12 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHhhhhhh-ccCCCCccchh
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDE--AEKCKTANEVIKSLTVQGLNSK-VGLWNNQDRNR 880 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 880 (900)
.+.+|+..|+..|+.+.+ ++...+.++++..++++| .+=..-|++=|+.|..+|+.+. +.||.+.+-.+
T Consensus 15 ~~~ke~~~l~~~v~~~~~--------~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l~~~~~D~~ 86 (326)
T PRK06746 15 AVINEANALKDMVGKFRQ--------LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYDKN 86 (326)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccC
Confidence 445666666666554443 233334444444444321 1222344555566666655554 57787777665
Q ss_pred hH
Q 002614 881 QA 882 (900)
Q Consensus 881 ~~ 882 (900)
.+
T Consensus 87 ~~ 88 (326)
T PRK06746 87 NA 88 (326)
T ss_pred Ce
Confidence 44
No 384
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=34.53 E-value=41 Score=25.80 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002614 826 LEAELERTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (900)
+.++-..+++.||..+++.+|+|+|.-
T Consensus 3 Eaak~kaaKe~IKsLt~QlK~maekl~ 29 (39)
T PF13713_consen 3 EAAKCKAAKEVIKSLTAQLKDMAEKLP 29 (39)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCc
Confidence 345667889999999999999999863
No 385
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.48 E-value=2.8e+02 Score=28.31 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 815 QVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
+...++..-+....++++.++++++-+
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554433
No 386
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=34.47 E-value=1.5e+02 Score=31.40 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=45.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (900)
.++=.....+.|.+++++|+.|.++|.+.++.-+...++..+-....+ .|+...+++..|...|++
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL--------~a~sl~~l~~~L~~~l~~ 106 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALL--------AARSLQELLQALDDGLRE 106 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------C--SHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHH
Confidence 355556777889999999999999999999888876666655443333 244566777777775554
No 387
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=2.3e+02 Score=31.05 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
-..+..|++.++++++.|-.+.+....+++..++++.+.=
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~ 79 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK 79 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666665555555555555554443
No 388
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.30 E-value=1.6e+02 Score=36.91 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.5
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (900)
-.|.+|+....|+.|+.+||.+.+...+++...+.|++.+.+
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789899999999999999999888888888887764443
No 389
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=34.27 E-value=1.7e+02 Score=29.51 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHhhhhhhc
Q 002614 853 TANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~ 870 (900)
.-.+..|.|...++..++
T Consensus 100 ~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 100 QLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 333333444433333333
No 390
>PRK14157 heat shock protein GrpE; Provisional
Probab=34.11 E-value=1.9e+02 Score=30.92 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+..|+.+|++++.+++.+....-++.+.++|..+.=...+++.+ .-+.+++++-.|.+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a-~~~~~~dLLpvlDn 139 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHG-IIDVLTALLPALDD 139 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh
Confidence 466666777777777766666666666666666554444444433 23455555555544
No 391
>PF14043 WVELL: WVELL protein
Probab=34.03 E-value=29 Score=30.17 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhhccCCCCccchhhHHHHHHHHH
Q 002614 855 NEVIKSLTVQGLNSKVGLWNNQDRNRQALLWEQLGE 890 (900)
Q Consensus 855 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 890 (900)
.|++.-||++|.+--..|...+-|+---||||.+--
T Consensus 1 ne~~e~Lt~~LlekN~~Ls~~qArtWVElLWeDFEs 36 (75)
T PF14043_consen 1 NEYFERLTNELLEKNPMLSYEQARTWVELLWEDFES 36 (75)
T ss_pred ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998743
No 392
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=34.01 E-value=3.3e+02 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.383 Sum_probs=37.9
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
+.+..++..+.+.+|+..++.+|.......+.++.+-+++.+++-++
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999998888888888888777777776443
No 393
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=33.93 E-value=75 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.9
Q ss_pred CcEEEEEecC-cEEEEEEeCCcEEEE
Q 002614 296 VNVELVACGE-YHTCAVTRSGDLYTW 320 (900)
Q Consensus 296 ~~I~~Va~G~-~hs~aLT~dG~Vysw 320 (900)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 889999999999864
No 394
>PRK09039 hypothetical protein; Validated
Probab=33.89 E-value=2.6e+02 Score=31.88 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=34.5
Q ss_pred cccchhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVE-------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
...+....-..|++||..||+|.. .++++-..+..+|+.+++.|+.|++.-..|-+ +-..+|+..|.+
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~--~~~~~~~~~l~~ 205 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN--RYRSEFFGRLRE 205 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH
Confidence 344444555556666666655544 44444455555566666666666544222222 233456555543
No 395
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.84 E-value=3.7e+02 Score=26.19 Aligned_cols=14 Identities=0% Similarity=-0.294 Sum_probs=9.7
Q ss_pred cccccccccCCcch
Q 002614 741 NLQMGRIYSPKSSI 754 (900)
Q Consensus 741 ~~~~~~~~~~~~~~ 754 (900)
-..|+.+.||....
T Consensus 22 Y~wwKGws~sD~M~ 35 (126)
T PF07889_consen 22 YMWWKGWSFSDLMF 35 (126)
T ss_pred eeeecCCchhHHHH
Confidence 45688888877654
No 396
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.81 E-value=2e+02 Score=29.24 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 806 NQEIIKLRAQV-------EELTSKSEHLEAELERTSKQLKTVTA---IAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 806 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
+.|+.+|+..+ ...+++......+++..++.+.+.-. -++++..+.|...+-++.....|+
T Consensus 62 n~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666532 23334444444555555554443333 334444444444443333333333
No 397
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=33.78 E-value=3.4e+02 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (900)
+.+.+|+++.+.+.+..++++..+++++..
T Consensus 25 ~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~ 54 (110)
T PF10828_consen 25 QRIDRLRAENKAQAQTIQQQEDANQELKAQ 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 398
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.78 E-value=3.1e+02 Score=24.94 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (900)
.+.+||++|.+.-..|.++-. .........-...+|-+.+.++|-|-|+++.
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD-------~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELD-------QAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444333333333 3333333333334555667777777777664
No 399
>PRK14161 heat shock protein GrpE; Provisional
Probab=33.67 E-value=2.3e+02 Score=29.21 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIA 844 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (900)
..|+++.+.|.-++++++.|+++.+....++.+++...+..-..+
T Consensus 12 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 12 TINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555444444444333
No 400
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.66 E-value=1.5e+02 Score=39.47 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=21.6
Q ss_pred ccccCCCC--CCCCceEEEEEc----CCCceeeeCCHHHHHHHHHHHHH
Q 002614 29 TFQRYPRP--EKEYQSFSLIYN----DRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 29 ~f~~~~~~--~~~~~~fsii~~----~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
.|+.|..+ .+-...|+.|-| .+| +--+|-.||-|.+-
T Consensus 10 gFKSF~~~~~i~f~~~~t~IvGPNGSGKS------NI~DAi~fVLG~~s 52 (1163)
T COG1196 10 GFKSFADPTEINFSPGFTAIVGPNGSGKS------NIVDAIRFVLGEQS 52 (1163)
T ss_pred CcccCCCCeeeecCCCCeEEECCCCCchH------HHHHHHHHHhCcch
Confidence 46666553 444566777772 122 45667777777653
No 401
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.50 E-value=2.9e+02 Score=25.31 Aligned_cols=65 Identities=29% Similarity=0.360 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLE---------AELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQG 865 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (900)
....+.+..|+.+|+.+++.|........ .+|+.+.++++.|+..++ +.|-+.-.+=|+.|..+.
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR--~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVR--SRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 44556678888888888887776644332 578888888888876665 345555555555555543
No 402
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=33.45 E-value=62 Score=23.53 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=22.0
Q ss_pred CCeeEEEecC-cEEEEEecCCcEEEE
Q 002614 469 ENICQVACGH-DLSVALTTSGHVYTM 493 (900)
Q Consensus 469 ~~I~~Ia~G~-~ht~aLT~~G~Vy~w 493 (900)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5789999999 899999999999953
No 403
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=33.41 E-value=82 Score=33.47 Aligned_cols=45 Identities=36% Similarity=0.413 Sum_probs=35.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
+.+|...|+.|..|-+.||++.++|..+-.+...+++...+.+-+
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 667888999999999999999998888877777777765555433
No 404
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=33.41 E-value=1.1e+02 Score=35.72 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=44.3
Q ss_pred cchhhhhHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQ---------VEELTSKSEH-LEAELERTSKQLKTVTAIAED--EAEKCKTANEVIKSLTV 863 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 863 (900)
+.+.+.++++++|+...... ++.|++++++ .+.|++++.+++.+...-.++ |..=...+|.++.-.+.
T Consensus 313 ~~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~~ 392 (417)
T TIGR01035 313 EEAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPTV 392 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777776552 4566666655 567777777665321111111 12224566667777777
Q ss_pred hhhhhhcc
Q 002614 864 QGLNSKVG 871 (900)
Q Consensus 864 ~~~~~~~~ 871 (900)
+||++++.
T Consensus 393 ~lk~~~~~ 400 (417)
T TIGR01035 393 RLKQLADK 400 (417)
T ss_pred HHHHHhcC
Confidence 88887743
No 405
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.37 E-value=1.5e+02 Score=39.47 Aligned_cols=31 Identities=45% Similarity=0.606 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (900)
.+.+|+..++.+...+..+......++..++
T Consensus 825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~ 855 (1163)
T COG1196 825 RLEQEIEELEEEIEELEEKLDELEEELEELE 855 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555544444444444444333333
No 406
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.37 E-value=84 Score=32.06 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERT 833 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (900)
++++|...+|+..||-++++|+.+.+++..+++.+
T Consensus 98 ~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 98 RKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588889999999999998888544444444433
No 407
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=33.25 E-value=3.6e+02 Score=25.93 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=49.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
..+|+..|+.....|..++.=|..+.+..+.+..+++.-+-++=-+-.+++.++..+++.+-.+..+.++.+.--|
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLE 97 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777776666666666666666666777776666666666666554443333
No 408
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.22 E-value=2.1e+02 Score=34.50 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
++.....+++++.+|+++++.+..+.+.....+...++..+.
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~ 213 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE 213 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455566666666666666666655544444444444433
No 409
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.14 E-value=7e+02 Score=27.54 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.8
Q ss_pred cEEEEEEeCCcEEEEcCC
Q 002614 306 YHTCAVTRSGDLYTWGDG 323 (900)
Q Consensus 306 ~hs~aLT~dG~VyswG~n 323 (900)
.|++++ -+|+||.+|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 355443 57899999864
No 410
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.09 E-value=2.2e+02 Score=37.13 Aligned_cols=7 Identities=43% Similarity=1.578 Sum_probs=4.4
Q ss_pred ccccccc
Q 002614 650 CDDCFTK 656 (900)
Q Consensus 650 C~~C~~~ 656 (900)
|..||..
T Consensus 1162 Ch~CF~~ 1168 (1758)
T KOG0994|consen 1162 CHECFQT 1168 (1758)
T ss_pred hHHHHHH
Confidence 6677654
No 411
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=33.08 E-value=2.1e+02 Score=29.88 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED 846 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (900)
..|++..|++.|+.--+.-++++..++.++.-+-.|.-+|++
T Consensus 72 ~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~q 113 (272)
T KOG4552|consen 72 REQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQ 113 (272)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666666666666666666666655543
No 412
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=33.04 E-value=13 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.661 Sum_probs=14.2
Q ss_pred ccCCCCCCCCcccccccccCCCc
Q 002614 601 VCSSCHNPFGFRRKRHNCYNCGL 623 (900)
Q Consensus 601 ~C~~C~~~Fsf~r~rh~C~~CG~ 623 (900)
.|..|+++..|.....+|..|..
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~ 25 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQK 25 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--
T ss_pred cCCCCCCccEEeCCEEECccccc
Confidence 58889998877776666666654
No 413
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=33.04 E-value=37 Score=36.32 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=27.3
Q ss_pred ccccccCccccCCCCCCCC-------cccccccccCCCceee
Q 002614 592 KWVSSVDHSVCSSCHNPFG-------FRRKRHNCYNCGLVFC 626 (900)
Q Consensus 592 k~vs~~d~s~C~~C~~~Fs-------f~r~rh~C~~CG~~~C 626 (900)
++....+.+.|..|...|. |+-..-||++|+..|-
T Consensus 125 rvp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 125 RVPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred ccCcccccccccccccccCCCccccccceeeeecccccccch
Confidence 4456678999999998863 6666889999988874
No 414
>PF15406 PH_6: Pleckstrin homology domain
Probab=32.96 E-value=86 Score=29.57 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=35.1
Q ss_pred eeccceeeeccCccCcccccCCCCCCCCceEEEEEcCCCceeeeCCHHHHHHHHHHHHH
Q 002614 13 LKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 13 ~~~~~i~~v~~G~~t~~f~~~~~~~~~~~~fsii~~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
|.|.++.+|...-- .-|++-...+..-+-|.+++|-+.||.-|++
T Consensus 67 inLadase~~~~g~--------------~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 67 INLADASEPEKDGS--------------NKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred EehhhccccccCCC--------------ceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 88888888765443 4577777666677789999999999998864
No 415
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=32.94 E-value=1.5e+02 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHhhhhhhccCCCCcc
Q 002614 850 KCKTANEVIKSLTVQGLNSKVGLWNNQD 877 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 877 (900)
.+..|+++++...+.++++++.+++..+
T Consensus 45 ~~~~a~~~l~~a~~~~~~l~~~~~~~~~ 72 (204)
T PRK14562 45 DFEEAEKLLKEAEELVKELKELLKDHPE 72 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 3667788888888888888888887644
No 416
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.86 E-value=1.5e+02 Score=33.71 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=15.7
Q ss_pred HHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 848 AEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
.-+-+++++=|..|..|+++...++-.+
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344555566666666666655555443
No 417
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.84 E-value=1.5e+02 Score=32.11 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 804 SLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (900)
.|.+|+.++|+++..|..+-+..+.++...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555444444444444
No 418
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.75 E-value=2.2e+02 Score=30.31 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002614 804 SLNQEIIKLRAQVEELT------------SKSEHLEAELERTSKQLKTVTAIAEDEAEKC 851 (900)
Q Consensus 804 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (900)
.+++++.+.|+++..|+ ...+..+...+.++++.++.....+.|-.+-
T Consensus 127 ~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 127 NAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777755553 3333334444445555555555666665544
No 419
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.63 E-value=1.8e+02 Score=33.65 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=32.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEELTSKSE----HLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
++...-..++.++.+|.+++..+.+.-. .-...++.++..+.+......+--+|.......|+.+|.
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~ 92 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITR 92 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554433322 122334455555555555555555555555555555544
No 420
>PLN02943 aminoacyl-tRNA ligase
Probab=32.63 E-value=78 Score=41.12 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+..|+.||++|++.|..+.+..+.+|..-.=.-+---.+..+|-+|.+..++-|+.|...|+.+.+.
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555444444433333333321111111112345666777777777777777777776643
No 421
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=32.58 E-value=1.1e+02 Score=34.90 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhhhhc-----cCCCCccch
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED-EAEKCKTANEVIKSLTVQGLNSKV-----GLWNNQDRN 879 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~ 879 (900)
.+|+..|+..|+.+.+ ++...+.++++..++.+ ..+=.+-|.+=++.|..+++++.. .||++.+-.
T Consensus 39 ~k~~~~l~~~v~~~~~--------~~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~ 110 (360)
T TIGR00019 39 SKEYSQLEEIVDCYRE--------YQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDE 110 (360)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 4455555555444333 23333444444444431 111223444445667777666654 488888776
Q ss_pred hhH
Q 002614 880 RQA 882 (900)
Q Consensus 880 ~~~ 882 (900)
+.+
T Consensus 111 ~~~ 113 (360)
T TIGR00019 111 KNV 113 (360)
T ss_pred CCe
Confidence 654
No 422
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.54 E-value=1.9e+02 Score=30.57 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=26.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (900)
++.+++..+.|.....++++..++++++.+.+..++.+
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~ 98 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK 98 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777788887776666555544
No 423
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.42 E-value=1e+02 Score=31.92 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=26.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
++-++.|+.|.+-..-||.|.+.....=+.+..++++++.....+
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666666555554433
No 424
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=32.38 E-value=2.1e+02 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=14.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSE 824 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (900)
|.+.+.-+.+.+|+.+|+.+++.|.++..
T Consensus 33 D~V~~dye~~l~e~~~l~~~i~~L~~~l~ 61 (212)
T COG3599 33 DDVIDDYEQLLDENEDLEDEIDELKEELK 61 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544433
No 425
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.34 E-value=89 Score=26.20 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELER 832 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (900)
|..+|..|..+...|.........+++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333
No 426
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.29 E-value=2.9e+02 Score=24.02 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=29.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL-------EAELERTSKQLKTVTAIAEDEAEK 850 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 850 (900)
+..+.+..+.+..||...+.+++.+...++.. ..+|+..-+.|...|..+.+.+.+
T Consensus 36 ~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 36 LEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666666666666666555544 233444444444555444444443
No 427
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.25 E-value=1.4e+02 Score=33.28 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=18.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHH
Q 002614 797 DSKQMNDSLNQEIIKLRAQVEEL 819 (900)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~ 819 (900)
.|++.|+.|.+|..+|+.+|+.|
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH
Confidence 47888888888888888887777
No 428
>PRK05560 DNA gyrase subunit A; Validated
Probab=32.13 E-value=1.2e+03 Score=29.89 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=64.0
Q ss_pred EeCCcEEEEEEcCCcEEEEeCCCCCc---cCCCCCCcccccEEeeecCCCcEEEEEecC-----cEEEEEEeCCcEEEEc
Q 002614 250 ACGARHAVLVTKQGEIFSWGEESGGR---LGHGREADVSHPQLIEILSGVNVELVACGE-----YHTCAVTRSGDLYTWG 321 (900)
Q Consensus 250 a~G~~ht~~Lt~dG~Vy~wG~n~~Gq---LG~g~~~~~~~P~~v~~l~~~~I~~Va~G~-----~hs~aLT~dG~VyswG 321 (900)
.....+.+++|+.|++|..-...--. .+.|.. .-..+....+.+|+.+.+-. ...+++|.+|.+.---
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRP----IVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeE----HHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 44556788999999999986542211 112211 01122333566777776643 4578899999776553
Q ss_pred CCCCCCCccCCCCCcccccceeeccCCCCCcEEEEE--ecCceEEEEecCCeEEEEecCCC
Q 002614 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYIS--CGLWHTAVVTSAGHLFTFGDGSF 380 (900)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~I~~Va--cG~~ht~aLT~~G~Vy~wG~n~~ 380 (900)
...+....-+ + ......-++..++.+. ....+.+++|+.|++|.+-...-
T Consensus 621 l~~~~~~~r~-G--------~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 621 LSEFSNIRSN-G--------IIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred hHHhhhcccC-C--------ceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 3322100000 0 0011111233454443 34456899999999999865443
No 429
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.10 E-value=2.1e+02 Score=30.63 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
+.+.++.+..+.+..+.+......++.+.+.+.|+....|.-+ +.|-+-+++|..
T Consensus 45 ~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~ 99 (225)
T COG1842 45 QALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHH
Confidence 3333444445566666777777777778888777755444433 233333444444
No 430
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.99 E-value=2.3e+02 Score=32.44 Aligned_cols=15 Identities=13% Similarity=-0.004 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHhhh
Q 002614 852 KTANEVIKSLTVQGL 866 (900)
Q Consensus 852 ~~~~~~~~~~~~~~~ 866 (900)
..+++-|+.+.+++.
T Consensus 249 ~~~~~~l~~~~~~l~ 263 (423)
T TIGR01843 249 TEAQARLAELRERLN 263 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 431
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=31.95 E-value=7.6e+02 Score=27.53 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=11.8
Q ss_pred EEEEecCCcEEEEeCC
Q 002614 481 SVALTTSGHVYTMGSA 496 (900)
Q Consensus 481 t~aLT~~G~Vy~wG~n 496 (900)
..++.-+|++|++|-.
T Consensus 315 ~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 315 GVSVSWNNGVLLIGGE 330 (346)
T ss_pred eEEEEcCCEEEEEecc
Confidence 3456678999999953
No 432
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.94 E-value=2.2e+02 Score=29.36 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhhh
Q 002614 856 EVIKSLTVQGLNSK 869 (900)
Q Consensus 856 ~~~~~~~~~~~~~~ 869 (900)
.=++.|..|.+.+.
T Consensus 175 ~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 175 KEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555443
No 433
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.94 E-value=2.5e+02 Score=28.33 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=46.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCCC
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWNN 875 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 875 (900)
|++-..|+..+.|+..|+...+.|..+.+.+...-+++.+++.+.-..... .+|....-|..|.++.+.+..++.+.
T Consensus 39 e~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~---e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 39 ESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQ---ERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555566667777777777777777666554444333344443322222222 24556666777777777777777765
Q ss_pred ccc
Q 002614 876 QDR 878 (900)
Q Consensus 876 ~~~ 878 (900)
.+.
T Consensus 116 ~~q 118 (158)
T PF09744_consen 116 SDQ 118 (158)
T ss_pred hhh
Confidence 553
No 434
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=31.91 E-value=1.9e+02 Score=34.09 Aligned_cols=69 Identities=25% Similarity=0.238 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhcc
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQ--------------LKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+.|+.+|+.--+...++++..++|+.+++.. ++.|-.++..|.+..++|+-=...|..|.+.+++-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6788888888888888888888888776654 44555666777788888887777777766666665
Q ss_pred CCC
Q 002614 872 LWN 874 (900)
Q Consensus 872 l~~ 874 (900)
|-+
T Consensus 107 l~~ 109 (604)
T KOG3564|consen 107 LKC 109 (604)
T ss_pred Hhc
Confidence 544
No 435
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.89 E-value=1.3e+02 Score=28.46 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=32.6
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTA 842 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (900)
++.+.+.-..|.+||..|+.++.+|.+.=..+..|-+.+.+.+.+...
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556677777777777777777777777777777777665543
No 436
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.89 E-value=1.9e+02 Score=35.25 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 002614 852 KTANEVIKSLTV 863 (900)
Q Consensus 852 ~~~~~~~~~~~~ 863 (900)
+.+++.++...+
T Consensus 243 ~~~~~~~~~~~~ 254 (555)
T TIGR03545 243 QNDKKQLKADLA 254 (555)
T ss_pred HHhHHHHHHHHH
Confidence 334444444443
No 437
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.85 E-value=1.9e+02 Score=36.98 Aligned_cols=67 Identities=25% Similarity=0.372 Sum_probs=42.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLT 862 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (900)
+.|++.-+.+.+++..+..++++|+..-..+++++...+...+++.+..+++-+|.+.--..|..+.
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence 3344444444444445555556666666666677777777778888888888888877665554443
No 438
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=31.81 E-value=1.5e+02 Score=26.12 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002614 819 LTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~ 837 (900)
|..|-+.+++.+.....++
T Consensus 40 l~~klDa~~~~l~~l~~~V 58 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKV 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 439
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.75 E-value=1.3e+02 Score=35.90 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=36.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
.+|.-+...|+-||.++..++++|++.-.+...|+.+++-.|+.|-
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 3455556678999999999999999999888888888887776554
No 440
>PF14282 FlxA: FlxA-like protein
Probab=31.71 E-value=1.9e+02 Score=27.03 Aligned_cols=57 Identities=12% Similarity=0.284 Sum_probs=44.8
Q ss_pred ccccchhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRA----QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE 849 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (900)
..+..|++.-..|.++|..|.. =.+.-.++.+++..+|+.++.+|..+-....++..
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988 23566778888888888888888766655555443
No 441
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.69 E-value=80 Score=41.23 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhc
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKV 870 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (900)
+..|+.+|++|++.|....+..+.+|..-.=.-+---.+...|-+|...+++-|..|...|+++.+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444333333332111000111123445555666666666666666666553
No 442
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=31.64 E-value=3.9e+02 Score=31.14 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=11.9
Q ss_pred cchhhhhHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQ 815 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~ 815 (900)
.++++....|.+++.+|+.|
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666663
No 443
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=31.58 E-value=33 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=20.1
Q ss_pred cccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 617 NCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 617 ~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
-|..||.+|.. ...+++..-+||.|-..|-+
T Consensus 3 ~C~~Cg~~Yh~------------~~~pP~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 3 ICPKCGRIYHI------------EFNPPKVEGVCDNCGGELVQ 33 (36)
T ss_dssp EETTTTEEEET------------TTB--SSTTBCTTTTEBEBE
T ss_pred CcCCCCCcccc------------ccCCCCCCCccCCCCCeeEe
Confidence 46677776652 23346888999999987744
No 444
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.42 E-value=1.9e+02 Score=37.36 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSE-------HLEAELERTSKQLKTVTAIAE 845 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 845 (900)
-...+.|++|+..++.|++.++.+.- ....+.++++++++.......
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888887777765 556667777777766554443
No 445
>PRK02119 hypothetical protein; Provisional
Probab=31.40 E-value=2.6e+02 Score=24.45 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 808 EIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
|+..+.+++..|..+...|+.-|+.+.+.+-+-.....+ -+.-++.|..+|+++....
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~-------L~~ql~~L~~rl~~~~~~~ 60 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDK-------MQVQLRYMANKLKDMQPSN 60 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcccc
Confidence 555666777777777777777666666555433322211 1233566666777776443
No 446
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.32 E-value=1.2e+02 Score=37.86 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHH
Q 002614 789 RSSAVTIDDSKQMNDSLNQEIIKLRA 814 (900)
Q Consensus 789 ~s~~~~~~~~~~~~~~~~~~~~~~~~ 814 (900)
|..-+....+++.||.|...+..|-.
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335567778888887766655544
No 447
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=13 Score=40.45 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=29.3
Q ss_pred cccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccccc
Q 002614 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKKT 660 (900)
Q Consensus 600 s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~~ 660 (900)
..|.-|-..- .---|--||++||++|..--. ..+.+ |+-|..+.+..
T Consensus 240 ~kC~LCLe~~----~~pSaTpCGHiFCWsCI~~w~--------~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 240 RKCSLCLENR----SNPSATPCGHIFCWSCILEWC--------SEKAE--CPLCREKFQPS 286 (293)
T ss_pred CceEEEecCC----CCCCcCcCcchHHHHHHHHHH--------ccccC--CCcccccCCCc
Confidence 4566665321 112377899999999964221 12333 99999887654
No 448
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=31.18 E-value=1.3e+02 Score=34.35 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHhhhhhhc-----cCCCCcc
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAED--EAEKCKTANEVIKSLTVQGLNSKV-----GLWNNQD 877 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~ 877 (900)
+.+|+..|+..|+...+ +....+.++++..++.+ +++=.+-|.+=+..|..+|+++-. .||.+.+
T Consensus 37 ~~~e~~~L~~~v~~~~~--------~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~~~l~~~l~~~e~~l~~~ll~~~~~ 108 (359)
T PRK00591 37 LSKEYAELEPIVEAYRE--------YKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPN 108 (359)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34566666665554443 23344445555555432 222234455555666666666653 5888877
Q ss_pred chhhH
Q 002614 878 RNRQA 882 (900)
Q Consensus 878 ~~~~~ 882 (900)
-.+.+
T Consensus 109 D~~~~ 113 (359)
T PRK00591 109 DDKNV 113 (359)
T ss_pred ccCCe
Confidence 76654
No 449
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.15 E-value=17 Score=40.17 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=27.3
Q ss_pred eecCceeEEEEecccccccCccccCCCCCCCCcccccccccCCCceeecCcCChhhhhhccCCCCCCCcccccccccccc
Q 002614 579 VCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLK 658 (900)
Q Consensus 579 acG~~~T~aI~~~k~vs~~d~s~C~~C~~~Fsf~r~rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~ 658 (900)
.||+.-.+.+...+-..+.-.-.|..|+..+.+. |..|.+||.--...=. ............-||+.|+.-++
T Consensus 177 vCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~~~~~l~-----~~~~e~~~~~rve~C~~C~~YlK 249 (290)
T PF04216_consen 177 VCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNTDHEKLE-----YFTVEGEPAYRVEVCESCGSYLK 249 (290)
T ss_dssp TT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---SS-EEE-------------SEEEEEETTTTEEEE
T ss_pred CCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCCCCccee-----eEecCCCCcEEEEECCcccchHH
Confidence 3555544444322111122344566776554443 4456666553222111 00011112234445999999887
Q ss_pred ccc
Q 002614 659 KTD 661 (900)
Q Consensus 659 ~~~ 661 (900)
-..
T Consensus 250 ~vd 252 (290)
T PF04216_consen 250 TVD 252 (290)
T ss_dssp EEE
T ss_pred HHh
Confidence 765
No 450
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.14 E-value=24 Score=45.10 Aligned_cols=53 Identities=26% Similarity=0.686 Sum_probs=39.8
Q ss_pred CccccCCCCCCCCcccc---cccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 598 DHSVCSSCHNPFGFRRK---RHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 598 d~s~C~~C~~~Fsf~r~---rh~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
...+|..|+...+.+.. ---|.-|+..+|..|+.. ........|..|+...++
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyey---------e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEY---------ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhh---------hhhcCCccCCccCCchhh
Confidence 34578899887665543 245999999999999863 245667889999988874
No 451
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=31.12 E-value=2.8e+02 Score=31.84 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERT 833 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (900)
|.|....++.++++|....+..+.++.+.
T Consensus 4 l~~~~~~~~~~~r~l~~~~~~~~~~~~~~ 32 (378)
T TIGR01554 4 LKEQREEIVAEIRSLLDKAEKLEKELTAA 32 (378)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44555555555555554333333333333
No 452
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.98 E-value=1.9e+02 Score=35.29 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHhhhh
Q 002614 850 KCKTANEVIKSLTVQGLN 867 (900)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~ 867 (900)
+.++|+++-+.++.+|+.
T Consensus 373 R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKA 390 (563)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467888899999998876
No 453
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.96 E-value=1.5e+02 Score=28.26 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTS 834 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (900)
|...++.|+++++.+..+.+.|+++...+..|++..+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 454
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.96 E-value=97 Score=33.65 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=38.4
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
+..|-+|+.|..|++|+.+++.++..|++..+...+.=.++=+|++-.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446889999999999999999999999988888777755555565544
No 455
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.92 E-value=2.2e+02 Score=36.94 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=40.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (900)
.+++........+||...+++++.|....++.+.+.+...+.......-+..|..|..++++-+|.-.+.
T Consensus 736 ~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk 805 (1074)
T KOG0250|consen 736 LEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDK 805 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555556666666666666666665555555555555555555556666666666655544333
No 456
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=30.90 E-value=1.4e+02 Score=39.07 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=63.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
.-.|++..+.+...++.+.+++..+..++++++....++.+..+.....+..+..+....+|+++.|.++...+.+.+-.
T Consensus 562 ~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~ 641 (1317)
T KOG0612|consen 562 AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKA 641 (1317)
T ss_pred HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 44566777777888888888888888888888877777777777777777777777778888888777776666666555
Q ss_pred Cccchhh
Q 002614 875 NQDRNRQ 881 (900)
Q Consensus 875 ~~~~~~~ 881 (900)
+.-+-+.
T Consensus 642 ~~~~l~k 648 (1317)
T KOG0612|consen 642 GKKELLK 648 (1317)
T ss_pred hhhHHHH
Confidence 5444333
No 457
>PRK10404 hypothetical protein; Provisional
Probab=30.88 E-value=4.4e+02 Score=24.52 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----hh-hhHHHHHHHHHHhhhh
Q 002614 802 NDSLNQEIIKLRAQVEELTSKS-EHLEAELERTSKQLKTVTAIAEDEAE----KC-KTANEVIKSLTVQGLN 867 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~ 867 (900)
.+.|..|+..|.+.+++|..-. +.-..+++.+++++++....+++-.. .. ..+|+.++....-.++
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888777765443 33446666666666666665554111 11 1246666666555544
No 458
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.84 E-value=1.6e+02 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
.++.+++.|+..|..+-+.+..+.+.++++++..
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666667766666666666666666666544
No 459
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.77 E-value=4e+02 Score=24.00 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=40.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 002614 793 VTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQ 864 (900)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (900)
.+.+.|+.+...+.+||.+.+.-.+.|.+..+ .++.+-.....-....+.++.+|+.|..+
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~-----------~L~~~~~e~~~~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSA-----------TLRSTNDEYDGQSSLLKKSRKLLKKLERR 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999888776666655433 33333333334455678888888888754
No 460
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=30.63 E-value=2.4e+02 Score=31.45 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=19.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELE 831 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (900)
+.|+..|-.|.++...|-.|.+...+..+.+..+++
T Consensus 133 ~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke 168 (391)
T KOG1850|consen 133 DKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE 168 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555656666666665555555555554444443
No 461
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.61 E-value=57 Score=28.73 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=16.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEEL 819 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (900)
++++.+.|..|..|+++|++..+.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776554443
No 462
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=30.54 E-value=92 Score=40.08 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 843 IAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
+...|-+|....++-|+.|.++|+.|.
T Consensus 847 vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 847 VVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666777777777777776653
No 463
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.47 E-value=2.2e+02 Score=30.70 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQL 837 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (900)
+++.-+.+.+|+..++.||..+...-+..+.++.+.+.++
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554444
No 464
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=30.30 E-value=2.5e+02 Score=27.62 Aligned_cols=9 Identities=44% Similarity=0.442 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 002614 810 IKLRAQVEE 818 (900)
Q Consensus 810 ~~~~~~~~~ 818 (900)
-.||+++++
T Consensus 12 R~lra~~re 20 (134)
T PRK10328 12 RTLRAMARE 20 (134)
T ss_pred HHHHHHHHh
Confidence 344444443
No 465
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.30 E-value=4.1e+02 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 809 IIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
...++.++..|+...+..+.++...+.+.+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555554433
No 466
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=30.17 E-value=2.2e+02 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=21.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSK 822 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (900)
+.+.+..|.=..||+-|++++..|+..
T Consensus 3 e~l~kLkE~He~ev~glq~K~~~L~~e 29 (120)
T PF10482_consen 3 ELLNKLKEIHEKEVQGLQNKLLELKKE 29 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456777788888999999999888754
No 467
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=30.11 E-value=1.7e+02 Score=30.45 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELER 832 (900)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (900)
.++....-|.+|+.|...|.++-...+.+|++
T Consensus 21 ~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~ 52 (191)
T PTZ00446 21 NNDEIYKAILKNREAIDALEKKQVQVEKKIKQ 52 (191)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433
No 468
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=29.99 E-value=2.3e+02 Score=31.57 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 002614 836 QLKTVTAIAEDEAEKCKTANEV 857 (900)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~ 857 (900)
+.+++.+-+++|++|.|++-|-
T Consensus 148 ~aE~a~aka~aEA~k~Ka~aeA 169 (387)
T COG3064 148 KAEAAKAKAAAEAAKLKAAAEA 169 (387)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 3444446666777776655443
No 469
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.63 E-value=1.2e+02 Score=30.48 Aligned_cols=42 Identities=33% Similarity=0.561 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVE------------ELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
..+....|..|+.+|+.+.. .|+++.+..++|+++.++.+..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.60 E-value=2.2e+02 Score=30.15 Aligned_cols=37 Identities=16% Similarity=0.393 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 800 QMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (900)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (900)
..-+.|..++..++.+|..|+.+.+..+.+++..+.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555433
No 471
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=29.58 E-value=3.6e+02 Score=24.92 Aligned_cols=76 Identities=26% Similarity=0.228 Sum_probs=40.0
Q ss_pred ccchhhhhHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHH-HHHHHHHHhh
Q 002614 795 IDDSKQMNDSLNQEIIKL---RAQV-EELTSKSEHLEAELERTSKQLK----TVTAIAEDEAEKCKTAN-EVIKSLTVQG 865 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 865 (900)
-++|...--.|+..+.|| |++| +-|.++++.-. +-.+.-..+. +-.+.+..|++|-=++- --.|.|..||
T Consensus 11 l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~-kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~L 89 (107)
T PRK15365 11 YRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPK-KSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRL 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666555554 4466 55555554322 2222222333 33455566666543332 3468888888
Q ss_pred hhhhcc
Q 002614 866 LNSKVG 871 (900)
Q Consensus 866 ~~~~~~ 871 (900)
|.|-..
T Consensus 90 Knlnt~ 95 (107)
T PRK15365 90 KQLNAQ 95 (107)
T ss_pred HhcCCC
Confidence 888654
No 472
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=29.48 E-value=1.8e+02 Score=27.30 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
.+||.-|+.|+++|.++-..++.|-..+ |.-+..|.++.|++||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lL----------------k~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLL----------------KTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhCCHHHHHHHHHhcc
Confidence 6888888888888887766666543322 34566788888888764
No 473
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=29.41 E-value=2.6e+02 Score=35.42 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 002614 815 QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGL 866 (900)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (900)
|++.++.+.++.+..|..++.+++.+-.....-....++.++.+++|..|++
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444444444332222222222233444444555544443
No 474
>PRK00846 hypothetical protein; Provisional
Probab=29.38 E-value=3.8e+02 Score=23.80 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANE 856 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (900)
+.|.-..+.+++.|..|+.++-=...-.+.++..+-+-+++|.......+-...|.|++..
T Consensus 2 ~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 2 EQLSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 475
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.33 E-value=66 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSK 835 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (900)
.+||.-|+.++.+|..+-.+.+.|-..+++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777776666665554443
No 476
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=29.30 E-value=18 Score=38.65 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 801 MNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.+..+..|...||.||..|..+++.+..|.+++++--|.--++ .-.|..++|-.|..|..
T Consensus 52 ~~~~~~~E~l~LQrQi~qLt~~lQ~~~~eneklk~~~K~~kal---leSkl~~~kk~IdrlK~ 111 (249)
T PF10422_consen 52 QSSKLVDETLLLQRQITQLTSQLQSQKQENEKLKELQKTQKAL---LESKLSNKKKEIDRLKL 111 (249)
T ss_dssp ---------------------------------------------------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4456888888999999999998888888777664433322222 23567777777776653
No 477
>PLN02195 cellulose synthase A
Probab=29.27 E-value=28 Score=44.27 Aligned_cols=51 Identities=25% Similarity=0.653 Sum_probs=38.4
Q ss_pred cccCCCCCCCCccccc---ccccCCCceeecCcCChhhhhhccCCCCCCCccccccccccccc
Q 002614 600 SVCSSCHNPFGFRRKR---HNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659 (900)
Q Consensus 600 s~C~~C~~~Fsf~r~r---h~C~~CG~~~C~sCss~k~~~~~~~~~~~~~~RVC~~C~~~l~~ 659 (900)
..|..|+...+.+..- --|.-|+..+|..|+.. ........|+.|+...+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey---------er~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY---------EIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhh---------hhhcCCccCCccCCcccc
Confidence 3688888776655332 35999999999999863 245677899999999873
No 478
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.20 E-value=84 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=28.3
Q ss_pred CCceEEEEE-cCCCceeeeCCHHHHHHHHHHHHH
Q 002614 39 EYQSFSLIY-NDRSLDLICKDKDEAEVWLVGLKA 71 (900)
Q Consensus 39 ~~~~fsii~-~~~sLdLi~~~~~ea~~W~~gl~~ 71 (900)
...+|.|.. ..+.+=|-|.|.+|++.||..|+.
T Consensus 70 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 357899988 557898999999999999999874
No 479
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=29.10 E-value=2.2e+02 Score=39.63 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccCCC
Q 002614 837 LKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGLWN 874 (900)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 874 (900)
+++....+.+|-+|.+.++.....|+.+|.+|-+.|-.
T Consensus 994 ~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 994 IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777888888888888888888776643
No 480
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.93 E-value=1e+03 Score=28.11 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=15.4
Q ss_pred eEEEecCcEEEEEecCCcEEEEe
Q 002614 472 CQVACGHDLSVALTTSGHVYTMG 494 (900)
Q Consensus 472 ~~Ia~G~~ht~aLT~~G~Vy~wG 494 (900)
+.+.-+..+.++=+++|.+|..-
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEEcccccEEEecCCcceEEeee
Confidence 34445667777778888887644
No 481
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=28.93 E-value=4e+02 Score=30.37 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 806 NQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVT 841 (900)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (900)
..-+.+|++++..|.+..+.++.+..++.+++++.+
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 482
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.92 E-value=2.4e+02 Score=31.18 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHhhhhhhcc
Q 002614 815 QVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEK------------CKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+.+.+..+-...+.++...++.++.+...+..|..= ++.+++.++...++|..+..+
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~ 204 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQ 204 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555555666666666666555542 666666666666665555544
No 483
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=3.2e+02 Score=25.66 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=54.0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
++.-|-|.-..-.+||.+-++.|..|+.... .+-.+++-+..++|..-|.-+=-.|.+.|.+.+++.-+
T Consensus 14 vvkRlvKE~~~Yekev~~eeakvakl~~dg~-d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~~l~ 82 (107)
T KOG3470|consen 14 VVKRLVKEVEYYEKEVKEEEAKVAKLKDDGA-DPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLESILA 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHh
Confidence 3455666667778888888888888877766 66788888888999998888888888888888777644
No 484
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=28.79 E-value=9.8e+02 Score=27.83 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=18.4
Q ss_pred CCEEEEEEC--CCcceeeecCCeEEEE
Q 002614 521 SFVEEVACG--AYHVAALTSTSKVYTW 545 (900)
Q Consensus 521 ~~V~~Ia~G--~~Ht~aLt~~G~Vy~W 545 (900)
..|..|+.. +.|.++++.+|.+|..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 457777766 3567778889999875
No 485
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=28.67 E-value=4.4e+02 Score=24.38 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEEL-TSKSEHLEAELERTSKQL----KTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.|.+.+....|+.++...-+++ +.-.+..+.++.+..... +.+..-++.||+ +-|+|+|.--..
T Consensus 15 IKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE--~ka~eiI~~Akq 83 (111)
T PRK06397 15 IKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAE--KKAVEIINKAKQ 83 (111)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4667778888888888733332 222333344444444333 233344455555 457777765443
No 486
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.62 E-value=1.2e+02 Score=33.36 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV 840 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (900)
|..-|.|.-|++-|...-++|+.++++.+.||+..++-+.|.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888888888888888888888888777543
No 487
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.58 E-value=1.8e+02 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.366 Sum_probs=23.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKT 839 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (900)
.....+.|+..+..+.+.++.+..+-+..+.+++.++++|++
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555556666666554
No 488
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.57 E-value=1.8e+02 Score=35.78 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 002614 818 ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSK 869 (900)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (900)
.|+.++..++.+.++..+++++.-...++-.+.++.=.|.++-|..+++.|-
T Consensus 430 ~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 430 RLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333334444444444444444444444444444444444444444333
No 489
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.53 E-value=3e+02 Score=32.71 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHHHHhhhhhhcc
Q 002614 849 EKCKTANEVIKSLTVQGLNSKVG 871 (900)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~ 871 (900)
+-..|+|+-=.-||++++||-+|
T Consensus 261 ~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 261 EHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 33445555556666677766543
No 490
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.49 E-value=4.2e+02 Score=25.62 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 802 NDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQ 836 (900)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (900)
...+.+++..+.+++..++...+.+....+.++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333333
No 491
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=28.49 E-value=4e+02 Score=23.21 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 810 IKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
.+|.+-.+.|.+..+.+..+-+..=..++.-.+....|.+ +-++=++.|+.|+..|.+.|
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
No 492
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.45 E-value=4.3e+02 Score=23.62 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhccC
Q 002614 798 SKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK--QLKTVTAIAEDEAEKCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
+...-+.+.+.|..|+.-=..|....+.+..++++..+ .+.+.+.++. =..|....|.=|-+|-..++.|.+|+
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=28.39 E-value=2.7e+02 Score=31.03 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred cccchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHH------HHHHHHHHhhhhHHHHHH-HHHH
Q 002614 794 TIDDSKQMNDSLNQEIIKLRA-QVEELTSKSEHLEAELER--TSKQLKTVT------AIAEDEAEKCKTANEVIK-SLTV 863 (900)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 863 (900)
..++|++..---.+-+.+|+. +.+.++++-+.+|.+-|+ -+++.+|.- .....|++|.|++-|--| --.+
T Consensus 88 ~aEel~~~q~aEqErlkQle~er~~a~e~qkq~eEa~kq~~~~qkqqeEqa~k~Aae~kk~aE~a~aka~aEA~k~Ka~a 167 (387)
T COG3064 88 VAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAA 167 (387)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q ss_pred hhhhhhc
Q 002614 864 QGLNSKV 870 (900)
Q Consensus 864 ~~~~~~~ 870 (900)
+-|..++
T Consensus 168 eAkkkAe 174 (387)
T COG3064 168 EAKKKAE 174 (387)
T ss_pred HHHHHHH
No 494
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=28.37 E-value=2.2e+02 Score=28.19 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhhhhccC
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAE-KCKTANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 872 (900)
+|+.---.-..-.+...|.-+.+-.-.++.++-++.++++.++ =+|+++|+||-|.+..++-.|.+
T Consensus 88 e~~~s~aesl~aaks~qElvelQTafark~~Eaaveqa~~~qe~arks~~es~kplk~r~e~Ame~i 154 (158)
T COG5490 88 EEIASHAESLRAAKSLQELVELQTAFARKSFEAAVEQAKEVQELARKSAEESIKPLKARIEKAMEEI 154 (158)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 495
>PRK14164 heat shock protein GrpE; Provisional
Probab=28.34 E-value=2.7e+02 Score=29.69 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002614 807 QEIIKLRAQVEELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTV 863 (900)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (900)
.++..|++|+++++.+.....++.+.++|+.+.-...+++-+. .+.+++++-.|.+
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~-~~~~~~LLpVlDn 132 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAK-AGVATDLLPILDD 132 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
No 496
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.33 E-value=2.8e+02 Score=35.15 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHH
Q 002614 796 DDSKQMNDSLNQEIIKLRA--------QVEELTSKSEHLEAELERTSKQLKTVTAI--------AEDEAEKCKTANEVIK 859 (900)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 859 (900)
.+...+.+.|.+.+++|+. |.+.|+..++....|+++...+..---.. +..|..|...+.-.||
T Consensus 1052 ~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~ 1131 (1189)
T KOG1265|consen 1052 EEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIK 1131 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhccCCCCccc--hhhHHHHHHHHH
Q 002614 860 SLTVQGLNSKVGLWNNQDR--NRQALLWEQLGE 890 (900)
Q Consensus 860 ~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 890 (900)
-..+..|.|+++.-.-+++ .++.-.-|||.|
T Consensus 1132 ~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e 1164 (1189)
T KOG1265|consen 1132 EFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAE 1164 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=28.29 E-value=2.1e+02 Score=31.86 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002614 798 SKQMNDSLNQEIIKLRAQVE-------------------------ELTSKSEHLEAELERTSKQLKTVTAIAEDEAEKCK 852 (900)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (900)
+++-.+.=..|+++||.+.+ +....+..+..+|+...+++.+++..... +...+
T Consensus 36 l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e~-~~~~~ 114 (302)
T PF05508_consen 36 LKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKEEL-SKSSE 114 (302)
T ss_pred HHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCcc
Q ss_pred hHHHHHHHHHHhhhhhhccC
Q 002614 853 TANEVIKSLTVQGLNSKVGL 872 (900)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~l 872 (900)
..|+.|+.+...+|++-.++
T Consensus 115 ~~~~~i~~V~~~ik~LL~rI 134 (302)
T PF05508_consen 115 NQKESIKKVERYIKDLLARI 134 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHH
No 498
>PF15294 Leu_zip: Leucine zipper
Probab=28.23 E-value=2e+02 Score=31.65 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-------------HHHHHHHHHHHHHhhhhHH
Q 002614 795 IDDSKQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSK------Q-------------LKTVTAIAEDEAEKCKTAN 855 (900)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------~~~~~~~~~~~~~~~~~~~ 855 (900)
++.|+..|+.|..-+..++.+.......-...+.+|+.++. . ++..++.++.|.+|.
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~---- 209 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA---- 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH----
Q ss_pred HHHHHHHHhhhhhhccCC
Q 002614 856 EVIKSLTVQGLNSKVGLW 873 (900)
Q Consensus 856 ~~~~~~~~~~~~~~~~l~ 873 (900)
+..++.+++.|.+.|.
T Consensus 210 --~~d~~~~~k~L~e~L~ 225 (278)
T PF15294_consen 210 --LQDKESQQKALEETLQ 225 (278)
T ss_pred --HHHHHHHHHHHHHHHH
No 499
>PTZ00464 SNF-7-like protein; Provisional
Probab=28.09 E-value=3.9e+02 Score=28.33 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhHHHHHHHHHHhhhhh
Q 002614 805 LNQEIIKLRAQVEELTSKSEHLEAELERTSKQLKTV--------TAIAEDEAEKCKTANEVIKSLTVQGLNS 868 (900)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (900)
+..-+.+|+.+++.|..+-+..+.|++++++++++. -..|.---.|.|....-+..|..|+..|
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nl 87 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNM 87 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.08 E-value=82 Score=29.01 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002614 799 KQMNDSLNQEIIKLRAQVEELTSKSEHLEAELERTSKQLK 838 (900)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (900)
+..++....++.+|+++++.|+.+-+..+.+++..+++++
T Consensus 62 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 62 EPEKESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!