Query 002614
Match_columns 900
No_of_seqs 549 out of 2713
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:03:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002614.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1333-1336//hhsearch_pdb/002614hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 572.5 35.7 374 191-592 10-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 557.9 43.5 369 175-571 9-379 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 551.6 40.3 371 193-591 21-450 (473)
4 3mvd_K Regulator of chromosome 1.0 1 1 543.6 43.9 379 178-592 20-419 (423)
5 1a12_A RCC1, regulator of chro 1.0 1 1 542.3 42.6 368 191-593 17-411 (413)
6 4d9s_A UVB-resistance protein 1.0 1 1 522.7 41.9 349 243-623 15-365 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 496.5 30.1 344 247-622 4-352 (389)
8 3of7_A Regulator of chromosome 1.0 1 1 481.0 28.4 343 245-623 11-413 (473)
9 3mvd_K Regulator of chromosome 1.0 1 1 479.7 33.4 339 243-623 23-382 (423)
10 1a12_A RCC1, regulator of chro 1.0 1 1 464.9 37.0 317 249-591 13-355 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=572.53 Aligned_cols=374 Identities=36% Similarity=0.645 Sum_probs=345.8
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 85048455799699982899996258997754544446655566413145689987999937867999981990999938
Q 002614 191 GSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGE 270 (900)
Q Consensus 191 g~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~ 270 (900)
...+.+++.+|+||+||.|. .||||.+.. .+...|.+++.+....|++|+||..|+++|+.+|+||+||.
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~ 79 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79 (389)
T ss_dssp -----------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred CCCCEEECCCCEEEEEECCC-CCCCCCCCC---------CCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEEC
T ss_conf 43226688998699703899-751898968---------66427776013467865999847773999958981999889
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCE--EEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 9999658899976455679500289949--99995596799998089499993998999755899985311120121688
Q 002614 271 ESGGRLGHGREADVSHPQLIEILSGVNV--ELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNL 348 (900)
Q Consensus 271 n~~GqLG~g~~~~~~~P~~V~~l~~~~I--~~VacG~~ht~aLT~~G~Vy~WG~n~~~~GqLG~g~~~~~~~P~~v~~~l 348 (900)
|..||||++.......|+++..+....+ ++|+||.+|+++|+++|+||+||.| ..||||+++......|+.+.. +
T Consensus 80 n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l 156 (389)
T 3kci_A 80 GAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-L 156 (389)
T ss_dssp CGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-G
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-C
T ss_conf 9998889899677337777110157732599987687749999489979997299--898678998756758768436-6
Q ss_pred CCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECC--CEEEEEEECCCCCC
Q ss_conf 9973899996685389994198099992399987888889887756056411797599998468--65899997247899
Q 002614 349 DGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGV--WHTAAVVVATDSSS 426 (900)
Q Consensus 349 ~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG~--~ht~ai~~~~~~~~ 426 (900)
.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. +|+++++
T Consensus 157 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~------- 229 (389)
T 3kci_A 157 RGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT------- 229 (389)
T ss_dssp TTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE-------
T ss_pred CCCEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC-------
T ss_conf 8973999971758589994898089948998887689998660455685045898399999768985899990-------
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 99999887982999937999987899999842424524777887269972195899995699199991799999998988
Q 002614 427 SSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVA 506 (900)
Q Consensus 427 ~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~~G~Vy~wG~n~~GQLG~~~~ 506 (900)
++|+||+||.|.+||||.++......|+.+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 230 -------~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 230 -------DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp -------TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred -------CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCC
T ss_conf -------5997999739988877989988854467954668996799947998799995899399985899988889998
Q ss_pred C-CCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEE
Q ss_conf 9-852045227767897899997888433441598399983399998799999999840896012698189995269604
Q 002614 507 D-GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFT 585 (900)
Q Consensus 507 ~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~~~~P~~V~~l~~~~v~~IacG~~hT 585 (900)
. ...|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|++|+.+.+.+|.+|+||.+||
T Consensus 303 ~~~~~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht 381 (389)
T 3kci_A 303 DHVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHT 381 (389)
T ss_dssp CCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEE
T ss_pred CCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCE
T ss_conf 66208758514-79998899994457099998999899803899886889898774676791135899879999667828
Q ss_pred EEEEECC
Q ss_conf 7797203
Q 002614 586 AIICLHK 592 (900)
Q Consensus 586 ~aI~~~k 592 (900)
++|+..+
T Consensus 382 ~al~~~~ 388 (389)
T 3kci_A 382 LAWSTSK 388 (389)
T ss_dssp EEECC--
T ss_pred EEEECCC
T ss_conf 9994699
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=557.89 Aligned_cols=369 Identities=34% Similarity=0.630 Sum_probs=342.7
Q ss_pred CCEEEECCCEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCC
Q ss_conf 52055336301341678504845579969998289999625899775454444665556641314568998799993786
Q 002614 175 ETFRISLSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGAR 254 (900)
Q Consensus 175 d~~r~~~~~~vs~~s~g~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ 254 (900)
..+..+...+++.++++.|.++++.+|.||+||.|. +||||.+.. .+...|..+..+...+|++|+||..
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ 78 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGAD 78 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSS
T ss_pred CCCCCCCCCEEEEECCCCEEEEEEECCEEEEEECCC-CCCCCCCCC---------CCCCCCEEECCCCCCCEEEEEECCC
T ss_conf 447788664699961879099998299899986999-988897986---------5573887822468997899982845
Q ss_pred EEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCC
Q ss_conf 799998199-0999938999965889997645567950028994999995596799998089499993998999755899
Q 002614 255 HAVLVTKQG-EIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHG 333 (900)
Q Consensus 255 ht~~Lt~dG-~Vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~n~~~~GqLG~g 333 (900)
|+++|+.+| +||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++|+||+||.| ..||||.+
T Consensus 79 ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g 156 (406)
T 4d9s_A 79 HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLG 156 (406)
T ss_dssp EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSS
T ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCC
T ss_conf 0899988899899975998868998998764610684146899889999770465897389859990799--87547798
Q ss_pred CCCCCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC
Q ss_conf 98531112012168899738999966853899941980999923999878888898877560564117975999984686
Q 002614 334 SKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVW 413 (900)
Q Consensus 334 ~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ 413 (900)
.......|+++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|..+..+.+.+|++|+||.+
T Consensus 157 ~~~~~~~p~~v~~-~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ 235 (406)
T 4d9s_A 157 DTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 235 (406)
T ss_dssp SCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS
T ss_pred CCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC
T ss_conf 9877552357435-689738999647873999947998898417988877889987768627840368962999997898
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 58999972478999999988798299993799998789999984242452477788726997219589999569919999
Q 002614 414 HTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTM 493 (900)
Q Consensus 414 ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~~G~Vy~w 493 (900)
|+++++ ++|+||+||.|.+||||+++......|+.+..+.+..|++|+||.+|+++|+++|+||+|
T Consensus 236 ht~~l~--------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 236 HTISVS--------------YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301 (406)
T ss_dssp EEEEEE--------------TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CEEEEC--------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEE
T ss_conf 189994--------------899889963899887899987675056782325899889998467879999599909993
Q ss_pred ECCCCCCCCCCCCC-CCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 17999999989889-8520452277678978999978884334415983999833999987999999998408960126
Q 002614 494 GSAAYGQLGVPVAD-GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLK 571 (900)
Q Consensus 494 G~n~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~~~~P~~V~~l~ 571 (900)
|.|.+||||.+... ...|..+.. +...+|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 302 G~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 302 GWNKFGQVGVGNNLDQCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp ECCTTSTTCSSSSSCEEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEC-CCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 389988887899877746779732-679858999928994999948997899659988866899987773887850026
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=551.63 Aligned_cols=371 Identities=24% Similarity=0.386 Sum_probs=318.8
Q ss_pred EEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 0484557996999828999962589977545444466555664131456--89987999937867999981990999938
Q 002614 193 AHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGE 270 (900)
Q Consensus 193 ~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~--~~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~ 270 (900)
+.++++.+|+||+||.|. .||||.|.... ..+...|.+++.+ ...+|++|+||..|+++|+.+|+||+||.
T Consensus 21 h~~~~~~~g~v~~wG~n~-~GqLG~G~~~~------~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGS-MCELGLGPLAK------NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp HHHCCSSCCEEEEEEECT-TSTTCSCSCGG------GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCCCCCCCCCEEEECCCC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 102678876589981898-87369897766------64455762155455577878999707876999916984999689
Q ss_pred CCCCCCCCCCCCC-----------------------CCCCEEEEE--C----CCCCEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 9999658899976-----------------------455679500--2----8994999995596799998089499993
Q 002614 271 ESGGRLGHGREAD-----------------------VSHPQLIEI--L----SGVNVELVACGEYHTCAVTRSGDLYTWG 321 (900)
Q Consensus 271 n~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~VacG~~ht~aLT~~G~Vy~WG 321 (900)
|..||||++.... ...|.+|.. + .+.+|++|+||.+|+++|+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98888999886533332345655567543344463346750134345775458981899982688799994898499946
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC----CCCCE
Q ss_conf 99899975589998--5311120121688997389999668538999419809999239998788888988----77560
Q 002614 322 DGTYNSGLLGHGSK--VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS----TSIPR 395 (900)
Q Consensus 322 ~n~~~~GqLG~g~~--~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~----~~~P~ 395 (900)
.|.++.||||.+.. .....|.++.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 996898754888877741447677552-4788879999637838999179929997699888889884454333543752
Q ss_pred EEEECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC----CCCCCEEECCCCCCCE
Q ss_conf 564117975999984686589999724789999999887982999937999987899999----8424245247778872
Q 002614 396 EVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKE----PRLFPECVAPLIDENI 471 (900)
Q Consensus 396 ~V~~l~~~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~----~~~~P~~V~~l~~~~I 471 (900)
.+.. .+|++|+||.+|+++++ ++|+||+||.|.+||||++... ....|+.|..+.+.+|
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~alt--------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i 315 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFALT--------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVI 315 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEEE--------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCE
T ss_pred ECCC---CCEEEEECCCCEEEEEE--------------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCE
T ss_conf 1277---66389954897589991--------------699889937898988588876568844541321255678638
Q ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC---------------CCCEEEECCCCCCCCEEEEEECCCCCEEE
Q ss_conf 699721958999956991999917999999989889---------------85204522776789789999788843344
Q 002614 472 CQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD---------------GLVPTRVDGEIAESFVEEVACGAYHVAAL 536 (900)
Q Consensus 472 ~~Ia~G~~ht~aLt~~G~Vy~wG~n~~GQLG~~~~~---------------~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aL 536 (900)
++|+||.+|+++|+.+|+||+||.|.+||||.+... ...|..+... ..|++|+||.+|+++|
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~---~~v~~Ia~G~~hs~al 392 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV---PKFKSVAAGSHHSVAV 392 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS---CCEEEEEECSSEEEEE
T ss_pred EEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC---CCEEEEEECCCEEEEE
T ss_conf 9998678869999389829998789987418884446653100457860262167004787---7537998578769999
Q ss_pred ECCCEEEEEECCCCCCCCCCC-CCCCCCCEEEE--CCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 159839998339999879999-99998408960--12698189995269604779720
Q 002614 537 TSTSKVYTWGKGANGQLGHGD-KDNRNSPTLVD--FLKDKQVKRVVCGLNFTAIICLH 591 (900)
Q Consensus 537 T~~G~Vy~WG~n~~GqLG~G~-~~~~~~P~~V~--~l~~~~v~~IacG~~hT~aI~~~ 591 (900)
+++|+||+||.|.+||||+|+ .++...|++|+ .+.+++|+.|+||.+||+++..+
T Consensus 393 ~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 393 AQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp ETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEEC
T ss_conf 6898489962898988879997765637848225666897289995188859999744
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=543.65 Aligned_cols=379 Identities=26% Similarity=0.386 Sum_probs=327.6
Q ss_pred EEECCCEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEE
Q ss_conf 55336301341678504845579969998289999625899775454444665556641314568998799993786799
Q 002614 178 RISLSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAV 257 (900)
Q Consensus 178 r~~~~~~vs~~s~g~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~ 257 (900)
+.+...+.+.+.+..+..+++.+|+||+||.|. .||||.+... .+...|.+++.+. +|++|+||..|++
T Consensus 20 ~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l~--~v~~va~G~~h~~ 88 (423)
T 3mvd_K 20 QPPKAKRARIAFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGIP--DAVDISAGGMHNL 88 (423)
T ss_dssp ---------CCCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSCS--SEEEEEECSSEEE
T ss_pred CCCCCEEEEEECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCCC--CCEEEEECCCEEE
T ss_conf 885120368863776533166997199986998-7778999987--------5676876756889--8449950789489
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCC--CCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCC
Q ss_conf 99819909999389999658899976--455679500289949999955967999980894999939--98999755899
Q 002614 258 LVTKQGEIFSWGEESGGRLGHGREAD--VSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD--GTYNSGLLGHG 333 (900)
Q Consensus 258 ~Lt~dG~Vy~WG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~--n~~~~GqLG~g 333 (900)
+|+.+|+||+||.|.+||||++...+ ...|.+|... .+|++|+||.+|+++|+++|+||+||. | ..||||.+
T Consensus 89 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~ 164 (423)
T 3mvd_K 89 VLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLT 164 (423)
T ss_dssp EEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESB
T ss_pred EEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCC
T ss_conf 99579949986789985899987678656577597479--978999848682899917996999769889--89986747
Q ss_pred CCCCCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC-----------CCCCCEEEEECCC
Q ss_conf 98531112012168899738999966853899941980999923999878888898-----------8775605641179
Q 002614 334 SKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHI-----------STSIPREVETLRG 402 (900)
Q Consensus 334 ~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~-----------~~~~P~~V~~l~~ 402 (900)
.......|..+ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|..+..+..
T Consensus 165 ~~~~~~~p~~~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 165 IDGNKRTPIDL---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241 (423)
T ss_dssp TTBCEEEEEES---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC
T ss_pred CCCCCCEEEEE---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 78887234696---699858999538974999926980999627867854777643445433345333568768840688
Q ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCEEECCCCCCCEEEEEECCCE
Q ss_conf 759999846865899997247899999998879829999379999878999998--424245247778872699721958
Q 002614 403 LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEP--RLFPECVAPLIDENICQVACGHDL 480 (900)
Q Consensus 403 ~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~h 480 (900)
..|++|+||.+|++++. +.+|.||+||.|.+||||.+.... ...|..+. ..+|++|+||.+|
T Consensus 242 ~~v~~i~~g~~~~~~~~-------------~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~h 305 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRE-------------SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHH 305 (423)
T ss_dssp CCEEEEEEETTEEEEEE-------------TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSE
T ss_pred CCEEEEEECCCEEEEEE-------------CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCE
T ss_conf 62799997996799998-------------8999499974999876799998874146448707---8874899724676
Q ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCC--CCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 9999569919999179999999898898--52045227767897899997888433441598399983399998799999
Q 002614 481 SVALTTSGHVYTMGSAAYGQLGVPVADG--LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDK 558 (900)
Q Consensus 481 t~aLt~~G~Vy~wG~n~~GQLG~~~~~~--~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~ 558 (900)
+++|+.+|+||+||.|.+||||.+.... ..|..+.. +.+ .|++|+||.+|+++|+++|+||+||.|.+||||+|+.
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 383 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDG 383 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSS
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 99995899399997998888798986665468667214-799-7799976898699995899889979997989879999
Q ss_pred CCCCCCEEEEC--CCCCCEEEEEECCCEEEEEEECC
Q ss_conf 99984089601--26981899952696047797203
Q 002614 559 DNRNSPTLVDF--LKDKQVKRVVCGLNFTAIICLHK 592 (900)
Q Consensus 559 ~~~~~P~~V~~--l~~~~v~~IacG~~hT~aI~~~k 592 (900)
.+...|++|.. +.+.+|.+|+||.+||++|+.++
T Consensus 384 ~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 384 DDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp CCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCCEEEECCCCCCCEEEEEEECCCCEEEEECCC
T ss_conf 786057697376647978999977888289997166
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=542.28 Aligned_cols=368 Identities=28% Similarity=0.470 Sum_probs=320.3
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
Q ss_conf 85048455799699982899996258997754544446655566413145689987999937867999981990999938
Q 002614 191 GSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGE 270 (900)
Q Consensus 191 g~~~~~l~~~G~Vy~WG~n~~~G~LG~g~~~~~~~~~~~~~~~~P~~i~~~~~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~ 270 (900)
..|.++++.+|+||+||.|. .||||.+... .....|.++.. ..+|++|+||..|+++|+.+|+||+||.
T Consensus 17 ~~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~ 85 (413)
T 1a12_A 17 VSHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGC 85 (413)
T ss_dssp CCCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCC--CCCEEEEEECCCEEEEECCCCCEEEEEC
T ss_conf 44204006898689977898-9837989986--------43046567168--8986999867775899947998999889
Q ss_pred CCCCCCCCCCCC--CCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCCCCCCC-CCCEEEC
Q ss_conf 999965889997--6455679500289949999955967999980894999939--9899975589998531-1120121
Q 002614 271 ESGGRLGHGREA--DVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGD--GTYNSGLLGHGSKVSC-WIPRKVS 345 (900)
Q Consensus 271 n~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~--n~~~~GqLG~g~~~~~-~~P~~v~ 345 (900)
|.+||||++... ....|.+|.. . .+|++|+||.+|+++|+++|+||+||. | ..||||.+..... ..|.++.
T Consensus 86 n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v~ 161 (413)
T 1a12_A 86 NDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQVQ 161 (413)
T ss_dssp CTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECC-C-CCEEEEECCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCEEEC
T ss_conf 998877988888753458747538-8-758999668873799848994899437768--998637678664466787961
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC-----------CCCCEEEEEC-----CCCEEEEEE
Q ss_conf 688997389999668538999419809999239998788888988-----------7756056411-----797599998
Q 002614 346 GNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS-----------TSIPREVETL-----RGLRTTRVS 409 (900)
Q Consensus 346 ~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~-----------~~~P~~V~~l-----~~~~I~~Ia 409 (900)
...+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|+.+... ...+|++|+
T Consensus 162 ---~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia 238 (413)
T 1a12_A 162 ---LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF 238 (413)
T ss_dssp ---CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEE
T ss_pred ---CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEE
T ss_conf ---89977999846761899858998898338988866887533345555455322446745763145666785489997
Q ss_pred ECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCC--CCEEEEEECCCEEEEEECC
Q ss_conf 46865899997247899999998879829999379999878999998424245247778--8726997219589999569
Q 002614 410 CGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLID--ENICQVACGHDLSVALTTS 487 (900)
Q Consensus 410 cG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~ht~aLt~~ 487 (900)
||.+|+++++ ++|+||+||.|.+||||+++......|+.|..+.+ .+|++|+||.+|+++|+++
T Consensus 239 ~G~~hs~alt--------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~ 304 (413)
T 1a12_A 239 CGAYFTFAIS--------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSE 304 (413)
T ss_dssp EETTEEEEEE--------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETT
T ss_pred ECCCEEEEEE--------------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 0788799996--------------89979998499876777999876356677010158873299995052458999079
Q ss_pred CCEEEEECCCCCCCCCCCC--CCCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 9199991799999998988--98520452277678978999978884334415983999833999987999999998408
Q 002614 488 GHVYTMGSAAYGQLGVPVA--DGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPT 565 (900)
Q Consensus 488 G~Vy~wG~n~~GQLG~~~~--~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~~~~P~ 565 (900)
|+||+||.|.+||||.+.. ....|..+.. + ..|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|+
T Consensus 305 G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~ 381 (413)
T 1a12_A 305 GKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-L--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPV 381 (413)
T ss_dssp SCEEEEECCGGGTTCSCTTCCCEEEEEECCS-S--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEE
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEECC-C--CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCE
T ss_conf 9899864898886689998863667779226-6--762599977564799948997899228989878799988755374
Q ss_pred EEEC--CCCCCEEEEEECCCEEEEEEECCC
Q ss_conf 9601--269818999526960477972031
Q 002614 566 LVDF--LKDKQVKRVVCGLNFTAIICLHKW 593 (900)
Q Consensus 566 ~V~~--l~~~~v~~IacG~~hT~aI~~~kw 593 (900)
+|.. +.+.+|.+|+||.+||++|+.++.
T Consensus 382 ~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 382 EMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp ECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred ECCCCCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 854556589869999557882899981688
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=522.70 Aligned_cols=349 Identities=36% Similarity=0.650 Sum_probs=323.1
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECC-CEEEEC
Q ss_conf 9987999937867999981990999938999965889997645567950028994999995596799998089-499993
Q 002614 243 ALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSG-DLYTWG 321 (900)
Q Consensus 243 ~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G-~Vy~WG 321 (900)
..+|++|+||..|+++|+.+|+||+||.|..||||++...+...|+++..+.+.+|++|+||.+|+++|+.+| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 99899975589998531112012168899738999966853899941980999923999878888898877560564117
Q 002614 322 DGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLR 401 (900)
Q Consensus 322 ~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~~~~P~~V~~l~ 401 (900)
.|. .||||+++......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.
T Consensus 95 ~n~--~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WGD--FGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CCG--GGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CCC--CCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 998--86899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEE
Q ss_conf 97599998468658999972478999999988798299993799998789999984242452477788726997219589
Q 002614 402 GLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLS 481 (900)
Q Consensus 402 ~~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ht 481 (900)
+.+|++|+||.+|+++++ ++|+||+||.|.+||||+++......|+++..+...+|++|+||.+|+
T Consensus 172 ~~~i~~va~G~~hs~alt--------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht 237 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT--------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHT 237 (406)
T ss_dssp TCCEEEEEECSSEEEEEE--------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEE
T ss_pred CCCEEEEECCCCEEEEEE--------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCE
T ss_conf 973899964787399994--------------799889841798887788998776862784036896299999789818
Q ss_pred EEEECCCCEEEEECCCCCCCCCCCC-CCCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9995699199991799999998988-985204522776789789999788843344159839998339999879999999
Q 002614 482 VALTTSGHVYTMGSAAYGQLGVPVA-DGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDN 560 (900)
Q Consensus 482 ~aLt~~G~Vy~wG~n~~GQLG~~~~-~~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~ 560 (900)
++|+.+|+||+||.|.+||||.+.. +...|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+
T Consensus 238 ~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 316 (406)
T 4d9s_A 238 ISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 316 (406)
T ss_dssp EEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC
T ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 999489988996389988789998767505678232-5899889998467879999599909993389988887899877
Q ss_pred CCCCEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 984089601269818999526960477972031014576634778989776546644347895
Q 002614 561 RNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGL 623 (900)
Q Consensus 561 ~~~P~~V~~l~~~~v~~IacG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~rkrh~C~~CG~ 623 (900)
...|++|..+.+.+|++|+||.+|+++|+.+ +..|.|++..+++.+-|.
T Consensus 317 ~~~p~~v~~~~~~~v~~va~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 317 QCSPVQVRFPDDQKVVQVSCGWRHTLAVTER--------------NNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EEEEEEECCGGGCCEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSSS
T ss_pred CCCCEEEECCCCCCEEEEEECCCEEEEEECC--------------CCEEEECCCCCCCCCCCC
T ss_conf 7467797326798589999289949999489--------------978996599888668999
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=496.48 Aligned_cols=344 Identities=32% Similarity=0.554 Sum_probs=265.3
Q ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECCCCCC
Q ss_conf 99993786799998199099993899996588999764556795002899499999559679999808949999399899
Q 002614 247 HNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYN 326 (900)
Q Consensus 247 ~~Ia~G~~ht~~Lt~dG~Vy~WG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~n~~~ 326 (900)
+++..-..++++|+.+|+||+||.|..||||.+...+...|+++..+...+|++|+||.+|+++|+.+|+||+||.| .
T Consensus 4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~ 81 (389)
T 3kci_A 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--A 81 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--G
T ss_pred CCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--C
T ss_conf 44465743226688998699703899751898968664277760134678659998477739999589819998899--9
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCC--CCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCE
Q ss_conf 975589998531112012168899--738999966853899941980999923999878888898877560564117975
Q 002614 327 SGLLGHGSKVSCWIPRKVSGNLDG--IHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR 404 (900)
Q Consensus 327 ~GqLG~g~~~~~~~P~~v~~~l~~--~~Iv~VacG~~hs~aLts~G~VytwG~n~~GqLG~g~~~~~~~P~~V~~l~~~~ 404 (900)
.||||.+.......|..+.. +.. .++++|+||.+|+++|+++|+||+||.|.+||||+++......|+.++.+.+.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~ 160 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIE 160 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCE
T ss_conf 98889899677337777110-15773259998768774999948997999729989867899875675876843668973
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECC--CEEE
Q ss_conf 99998468658999972478999999988798299993799998789999984242452477788726997219--5899
Q 002614 405 TTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGH--DLSV 482 (900)
Q Consensus 405 I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~ht~ 482 (900)
|++|+||.+|+++++ ++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. +|++
T Consensus 161 i~~va~G~~hs~alt--------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~ 226 (389)
T 3kci_A 161 VVDVAAGGAHSACVT--------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTL 226 (389)
T ss_dssp EEEEEECSSEEEEEE--------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEE
T ss_pred EEEEEECCCEEEEEE--------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEE
T ss_conf 999971758589994--------------898089948998887689998660455685045898399999768985899
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCC-CCCEEEECCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9956991999917999999989889-852045227767897899997888433441598399983399998799999999
Q 002614 483 ALTTSGHVYTMGSAAYGQLGVPVAD-GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNR 561 (900)
Q Consensus 483 aLt~~G~Vy~wG~n~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~~~ 561 (900)
+|+++|+||+||.|.+||||.+... ...|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++.++.
T Consensus 227 ~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~ 305 (389)
T 3kci_A 227 CLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHV 305 (389)
T ss_dssp EEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred EECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 99059979997399888779899888544679546-68996799947998799995899399985899988889998662
Q ss_pred CCCEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8408960126981899952696047797203101457663477898977654664434789
Q 002614 562 NSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCG 622 (900)
Q Consensus 562 ~~P~~V~~l~~~~v~~IacG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~rkrh~C~~CG 622 (900)
..|++|+.+.+.+|++|+||..|+++++.+ +..|.|+...+++.+.|
T Consensus 306 ~~P~~v~~l~~~~v~~ia~G~~h~~al~~~--------------G~v~~wG~n~~GqLG~g 352 (389)
T 3kci_A 306 RRPRQVQGLQGKKVIAIATGSLHCVCCTED--------------GEVYTWGDNDEGQLGDG 352 (389)
T ss_dssp EEEEECGGGTTCCEEEEEECSSEEEEEETT--------------CCEEEEECCTTSTTCSS
T ss_pred CCCEEECCCCCCCEEEEEECCCEEEEECCC--------------CCEEEEECCCCCCCCCC
T ss_conf 087585147999889999445709999899--------------98998038998868898
No 8
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=481.04 Aligned_cols=343 Identities=22% Similarity=0.345 Sum_probs=274.2
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC---CCCCCCEEEEEC--CCCCEEEEEECCCEEEEEEECCCEEE
Q ss_conf 8799993786799998199099993899996588999---764556795002--89949999955967999980894999
Q 002614 245 DVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGRE---ADVSHPQLIEIL--SGVNVELVACGEYHTCAVTRSGDLYT 319 (900)
Q Consensus 245 ~V~~Ia~G~~ht~~Lt~dG~Vy~WG~n~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~VacG~~ht~aLT~~G~Vy~ 319 (900)
.|....+++.|+++++.+|+||+||.|.+||||+|.. .++..|.+++.+ ...+|++|+||.+|+++|+.+|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEE
T ss_conf 66552134201026788765899818988736989776664455762155455577878999707876999916984999
Q ss_pred ECCCCCCCCCCCCCCCCC-----------------------CCCCEEECC--CC---CCCCEEEEEECCCEEEEEECCCE
Q ss_conf 939989997558999853-----------------------111201216--88---99738999966853899941980
Q 002614 320 WGDGTYNSGLLGHGSKVS-----------------------CWIPRKVSG--NL---DGIHLSYISCGLWHTAVVTSAGH 371 (900)
Q Consensus 320 WG~n~~~~GqLG~g~~~~-----------------------~~~P~~v~~--~l---~~~~Iv~VacG~~hs~aLts~G~ 371 (900)
||.| ..||||++.... ...|.++.. .. .+.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCE
T ss_conf 6899--88889998865333323456555675433444633467501343457754589818999826887999948984
Q ss_pred EEEEEC--CCCCCCCCCCC--CCCCCCEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 999923--99987888889--88775605641179759999846865899997247899999998879829999379999
Q 002614 372 LFTFGD--GSFGALGHGDH--ISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKG 447 (900)
Q Consensus 372 VytwG~--n~~GqLG~g~~--~~~~~P~~V~~l~~~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~G 447 (900)
||+||. |.+||||++.. .....|..|..+.+.+|++|+||.+|+++|+ ++|+||+||.|.+|
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt--------------~~G~v~~wG~n~~G 234 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD--------------EEGMVFAWGNGQQN 234 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE--------------TTSCEEEEECCTTS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEE--------------CCCEEEEEECCCCC
T ss_conf 9994699689875488887774144767755247888799996378389991--------------79929997699888
Q ss_pred CCCCCCCCC----CCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-----CCCEEEECCCC
Q ss_conf 878999998----424245247778872699721958999956991999917999999989889-----85204522776
Q 002614 448 RLGHGDKEP----RLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD-----GLVPTRVDGEI 518 (900)
Q Consensus 448 qLG~g~~~~----~~~P~~V~~l~~~~I~~Ia~G~~ht~aLt~~G~Vy~wG~n~~GQLG~~~~~-----~~~P~~v~~~l 518 (900)
|||++.... ...|..+.. .+|++|+||.+|+++|+.+|+||+||.|.+||||.+... ...|..+. .+
T Consensus 235 qLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~-~~ 310 (473)
T 3of7_A 235 QLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLA-LP 310 (473)
T ss_dssp TTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECC-CC
T ss_pred CCCCCCCCCCCCCCCCCEECCC---CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCC-CC
T ss_conf 8898844543335437521277---6638995489758999169988993789898858887656884454132125-56
Q ss_pred CCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCC--------------CCCCCEEEECCCCCCEEEEEECCCE
Q ss_conf 78978999978884334415983999833999987999999--------------9984089601269818999526960
Q 002614 519 AESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKD--------------NRNSPTLVDFLKDKQVKRVVCGLNF 584 (900)
Q Consensus 519 ~~~~V~~Ia~G~~Ht~aLT~~G~Vy~WG~n~~GqLG~G~~~--------------~~~~P~~V~~l~~~~v~~IacG~~h 584 (900)
.+..|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||.+|
T Consensus 311 ~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~h 388 (473)
T 3of7_A 311 DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHH 388 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSE
T ss_pred CCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CEEEEEECCCE
T ss_conf 7863899986788699993898299987899874188844466531004578602621670047877--53799857876
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 477972031014576634778989776546644347895
Q 002614 585 TAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNCGL 623 (900)
Q Consensus 585 T~aI~~~kwv~~~d~s~C~~C~~~Fsf~rkrh~C~~CG~ 623 (900)
++||+.+ +..|.|+...+++.+.|.
T Consensus 389 s~al~~~--------------G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 389 SVAVAQN--------------GIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp EEEEETT--------------SCEEEEECCTTCTTCCCS
T ss_pred EEEEECC--------------CCEEEEECCCCCCCCCCC
T ss_conf 9999689--------------848996289898887999
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=479.70 Aligned_cols=339 Identities=21% Similarity=0.326 Sum_probs=291.5
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCC-CCCCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 998799993786799998199099993899996588999-7645567950028994999995596799998089499993
Q 002614 243 ALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGRE-ADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWG 321 (900)
Q Consensus 243 ~~~V~~Ia~G~~ht~~Lt~dG~Vy~WG~n~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG 321 (900)
...+++|++|..|+++++.+|+||+||.|.+||||++.. .....|.++..+. .|++|+||..|+++|+.+|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEE
T ss_conf 12036886377653316699719998699877789999875676876756889--8449950789489995799499867
Q ss_pred CCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC--CCCCCCCCCCCCCCCCCEEE
Q ss_conf 9989997558999853--1112012168899738999966853899941980999923--99987888889887756056
Q 002614 322 DGTYNSGLLGHGSKVS--CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD--GSFGALGHGDHISTSIPREV 397 (900)
Q Consensus 322 ~n~~~~GqLG~g~~~~--~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~--n~~GqLG~g~~~~~~~P~~V 397 (900)
.| ..||||++.... ...|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89--98589998767865657759747---99789998486828999179969997698898998674778887234696
Q ss_pred EECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-----------CCCCCCEEECCC
Q ss_conf 411797599998468658999972478999999988798299993799998789999-----------984242452477
Q 002614 398 ETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK-----------EPRLFPECVAPL 466 (900)
Q Consensus 398 ~~l~~~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~-----------~~~~~P~~V~~l 466 (900)
+.+.+|++|+||.+|+++|+ ++|+||+||.|.+||||++.. .....|..+..+
T Consensus 176 --~~~~~i~~va~G~~hs~alt--------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~ 239 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVILT--------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT 239 (423)
T ss_dssp --STTCCEEEEEECSSEEEEEE--------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT
T ss_pred --CCCCCEEEEECCCCEEEEEE--------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf --69985899953897499992--------------69809996278678547776434454333453335687688406
Q ss_pred CCCCEEEEEECCCEEEEE-ECCCCEEEEECCCCCCCCCCCC-CCC--CEEEECCCCCCCCEEEEEECCCCCEEEECCCEE
Q ss_conf 788726997219589999-5699199991799999998988-985--204522776789789999788843344159839
Q 002614 467 IDENICQVACGHDLSVAL-TTSGHVYTMGSAAYGQLGVPVA-DGL--VPTRVDGEIAESFVEEVACGAYHVAALTSTSKV 542 (900)
Q Consensus 467 ~~~~I~~Ia~G~~ht~aL-t~~G~Vy~wG~n~~GQLG~~~~-~~~--~P~~v~~~l~~~~V~~Ia~G~~Ht~aLT~~G~V 542 (900)
...+|.+|+||.+|++++ +.+|.||+||.|.+||||.+.. ... .|..+. ...|++|+||.+|+++|+++|+|
T Consensus 240 ~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v 315 (423)
T 3mvd_K 240 RAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKC 315 (423)
T ss_dssp TCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCE
T ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCEEEEECCCCEEEEEECCCCE
T ss_conf 88627999979967999988999499974999876799998874146448707----88748997246769999589939
Q ss_pred EEEECCCCCCCCCCCCCCC-CCCEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9983399998799999999-840896012698189995269604779720310145766347789897765466443478
Q 002614 543 YTWGKGANGQLGHGDKDNR-NSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRRKRHNCYNC 621 (900)
Q Consensus 543 y~WG~n~~GqLG~G~~~~~-~~P~~V~~l~~~~v~~IacG~~hT~aI~~~kwv~~~d~s~C~~C~~~Fsf~rkrh~C~~C 621 (900)
|+||.|.+||||+++..+. ..|++|+.+.+ +|++|+||.+|+++|+.+ +..|.|+...+++.+.
T Consensus 316 ~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~ 380 (423)
T 3mvd_K 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID--------------GKLYSWGSGVNNQLGV 380 (423)
T ss_dssp EEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT--------------SCEEEEECCTTSCSSS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCC--------------CCEEEECCCCCCCCCC
T ss_conf 9997998888798986665468667214799-779997689869999589--------------9889979997989879
Q ss_pred CC
Q ss_conf 95
Q 002614 622 GL 623 (900)
Q Consensus 622 G~ 623 (900)
|.
T Consensus 381 g~ 382 (423)
T 3mvd_K 381 GD 382 (423)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=464.91 Aligned_cols=317 Identities=27% Similarity=0.488 Sum_probs=174.4
Q ss_pred EEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCC-CCCCEEEEECCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCC
Q ss_conf 99378679999819909999389999658899976-45567950028994999995596799998089499993998999
Q 002614 249 IACGARHAVLVTKQGEIFSWGEESGGRLGHGREAD-VSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNS 327 (900)
Q Consensus 249 Ia~G~~ht~~Lt~dG~Vy~WG~n~~GqLG~g~~~~-~~~P~~V~~l~~~~I~~VacG~~ht~aLT~~G~Vy~WG~n~~~~ 327 (900)
.+.+..|+++|+.+|+||+||.|..||||++.... ...|+++..+ .+|++|+||.+|+++|+++|+||+||.| ..
T Consensus 13 ~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n--~~ 88 (413)
T 1a12_A 13 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN--DE 88 (413)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC--TT
T ss_pred HHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECC--CC
T ss_conf 4420442040068986899778989837989986430465671688--9869998677758999479989998899--98
Q ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC--CCCCCCCCCCCCCC-CCCEEEEECCC
Q ss_conf 75589998--531112012168899738999966853899941980999923--99987888889887-75605641179
Q 002614 328 GLLGHGSK--VSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD--GSFGALGHGDHIST-SIPREVETLRG 402 (900)
Q Consensus 328 GqLG~g~~--~~~~~P~~v~~~l~~~~Iv~VacG~~hs~aLts~G~VytwG~--n~~GqLG~g~~~~~-~~P~~V~~l~~ 402 (900)
||||++.. .....|.++. +. .+|++|+||.+|+++|+++|+||+||. |.+||||+++.... ..|.+| +..
T Consensus 89 GqLG~~~~~~~~~~~P~~v~--l~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~ 163 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE--LQ-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLD 163 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC--CC-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCS
T ss_pred CCCCCCCCCCCCCCCCEEEC--CC-CCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCC
T ss_conf 87798888875345874753--88-75899966887379984899489943776899863767866446678796--189
Q ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC-----------CCCCCEEECCC-----
Q ss_conf 75999984686589999724789999999887982999937999987899999-----------84242452477-----
Q 002614 403 LRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKE-----------PRLFPECVAPL----- 466 (900)
Q Consensus 403 ~~I~~IacG~~ht~ai~~~~~~~~~~~~~~~~~G~Vy~wG~n~~GqLG~g~~~-----------~~~~P~~V~~l----- 466 (900)
.+|++|+||.+|+++|+ ++|+||+||.|.+||||++... ....|+.+...
T Consensus 164 ~~i~~ia~G~~hs~alt--------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~ 229 (413)
T 1a12_A 164 VPVVKVASGNDHLVMLT--------------ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229 (413)
T ss_dssp SCEEEEEECSSEEEEEE--------------TTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCC
T ss_pred CCEEEEEECCCEEEEEC--------------CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 97799984676189985--------------8998898338988866887533345555455322446745763145666
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCC-CCCEEEECCCCCC--CCEEEEEECCCCCEEEECCCEEE
Q ss_conf 78872699721958999956991999917999999989889-8520452277678--97899997888433441598399
Q 002614 467 IDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD-GLVPTRVDGEIAE--SFVEEVACGAYHVAALTSTSKVY 543 (900)
Q Consensus 467 ~~~~I~~Ia~G~~ht~aLt~~G~Vy~wG~n~~GQLG~~~~~-~~~P~~v~~~l~~--~~V~~Ia~G~~Ht~aLT~~G~Vy 543 (900)
...+|++|+||.+|+++|+.+|+||+||.|.+||||.+... ...|..+.. +.+ ..|++|+||.+|+++|+++|+||
T Consensus 230 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-l~~~~~~v~~ia~G~~hs~al~~~G~v~ 308 (413)
T 1a12_A 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHTVCMDSEGKAY 308 (413)
T ss_dssp SBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG-GCCTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHH-CCCCCCEEEEEECCCCEEEEEECCCCEE
T ss_conf 785489997078879999689979998499876777999876356677010-1588732999950524589990799899
Q ss_pred EEECCCCCCCCCC-CCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 9833999987999-99999840896012698189995269604779720
Q 002614 544 TWGKGANGQLGHG-DKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLH 591 (900)
Q Consensus 544 ~WG~n~~GqLG~G-~~~~~~~P~~V~~l~~~~v~~IacG~~hT~aI~~~ 591 (900)
+||.|.+||||+| +..+...|++|+.+. .|++|+||.+|+++|+.+
T Consensus 309 ~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~ 355 (413)
T 1a12_A 309 SLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKD 355 (413)
T ss_dssp EEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETT
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEEEECC
T ss_conf 86489888668999886366777922667--625999775647999489
Done!