BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002615
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 157/305 (51%), Gaps = 31/305 (10%)
Query: 118 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKP--DE 174
++N YG TE + T LP ++ S+PIG PISN + +L E ++P
Sbjct: 749 LINCYGPTEGTVFATAHVVHDLPD-----SISSLPIGKPISNASVYILNEQSQLQPFGAV 803
Query: 175 GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234
GE+ G+ +S GY + + ++++ + +T +RTGD AR + G +
Sbjct: 804 GELCISGMGVSKGYVNRADLTKEKFIE---------NPFKPGETLYRTGDLARWLPDGTI 854
Query: 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT 294
+ GR D +KI G R+ LEEIE L+ +P V D VV+ +H+ + A++V
Sbjct: 855 EYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV-----N 909
Query: 295 SSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDAD 354
+++ +K+ + +LP M+P F F+D LP+T++GKV+ L ++ +
Sbjct: 910 RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGP 969
Query: 355 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSI----AAAHVAHNLGIDM--RLI 408
+++ + I + + L +++ HD+FF +GG+++ AA+ + LGID+ +L+
Sbjct: 970 R---NEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLL 1026
Query: 409 YNFPT 413
+ PT
Sbjct: 1027 FEAPT 1031
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 28/341 (8%)
Query: 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTL--VVPPIIELKKNLISIIHFLQAYSI 62
+ L ++ L + SF + + +++T TL + +I K+L + L+ I
Sbjct: 180 FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS---LEQSDI 236
Query: 63 SRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122
T+ PS + L +++ + + ++K + GEVLP + + + FP +I+N Y
Sbjct: 237 QVWTSTPSFAEMCL--MEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTY 294
Query: 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKPD--EGEIYA 179
G TE + T +L+ KS+P+G S+C +++++ D T+ PD +GEI
Sbjct: 295 GPTEATVAVTGIHVTE--EVLDQ--YKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVI 350
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239
G +S GY + + G + Y +TGD A +++G L + GR
Sbjct: 351 VGPSVSVGYLGSPELTEKAFTMID-----------GERAY-KTGD-AGYVENGLLFYNGR 397
Query: 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIF 299
D IK++G RM LEEIEH LR V +V K + L+A +V E E
Sbjct: 398 LDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFK 457
Query: 300 LSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
L+S IK ++ +LP MIP +F++ S+PMT +GKVD L
Sbjct: 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 166/341 (48%), Gaps = 28/341 (8%)
Query: 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTL--VVPPIIELKKNLISIIHFLQAYSI 62
+ L ++ L + SF + + +++T TL + +I K+L + L+ I
Sbjct: 180 FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS---LEQSDI 236
Query: 63 SRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122
T+ PS + L +++ + + ++K + GEVLP + + + FP +I+N Y
Sbjct: 237 QVWTSTPSFAEMCL--MEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTY 294
Query: 123 GSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKPD--EGEIYA 179
G TE + T +L+ KS+P+G S+C +++++ D T+ PD +GEI
Sbjct: 295 GPTEATVAVTGIHVTE--EVLDQ--YKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVI 350
Query: 180 GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239
G +S GY + + G + Y +TGD A +++G L + GR
Sbjct: 351 VGPSVSVGYLGSPELTEKAFTMID-----------GERAY-KTGD-AGYVENGLLFYNGR 397
Query: 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIF 299
D IK++G RM LEEIEH LR V +V K + L+A +V E E
Sbjct: 398 LDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFK 457
Query: 300 LSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 339
L+S IK ++ +LP MIP +F++ S+PMT +GKVD L
Sbjct: 458 LTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 36/352 (10%)
Query: 18 SISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLP 77
SISF + E A+LT +L I LK + + F Q Y + TV +L +
Sbjct: 231 SISFDASVWEMFMALLTGASLY----IILKDTINDFVKFEQ-YINQKEITVITLPPTYVV 285
Query: 78 ALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCK 137
L + + S++ L+ +G S+ ++K ++ +N YG TE + T +
Sbjct: 286 HLDPERIL----SIQTLITAGSATSPSL---VNKWKEKVTYINAYGPTETTICATTWVAT 338
Query: 138 RLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGYFSESTF 194
+ + SVPIG PI N I +V+ + +K + GE+ GG L+ GY+
Sbjct: 339 K------ETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPEL 392
Query: 195 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 254
++V + G + Y +TGD AR + G++ +LGR D +KI G R+ LE
Sbjct: 393 TSQKFV--------DNPFVPGEKLY-KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE 443
Query: 255 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314
E+E L H + +TAV HK E L A+ V + I L ++ + S +LP
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFV-----SEKHIPLEQLRQFSSEELPTY 498
Query: 315 MIPNRFVFMDSLPMTSSGKVDYASL-SASTSFTISAQHDADETKASDLLQVI 365
MIP+ F+ +D +P+TS+GK+D L +F + ++A + + L I
Sbjct: 499 MIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTI 550
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 32/339 (9%)
Query: 5 YPLHGEELLLFKTSISFIDHLQEFLSAILTACTL--VVPPIIELKKNLISIIHFLQAYSI 62
+P+ G ++ L + SF + + + + TL V + K L L+ +
Sbjct: 179 FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF---EELKKSGL 235
Query: 63 SRLTTVPSLMRVVL--PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILN 120
+ T+ PS +++ L P H + + GEVLP+S+ + + FP I N
Sbjct: 236 NVWTSTPSFVQMCLMDPGFSQDLLPHADT----FMFCGEVLPVSVAKALLERFPKAKIFN 291
Query: 121 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEI 177
YG TE + T + ++ S +S+P+G + +I +++ + + ++GEI
Sbjct: 292 TYGPTEATVAVTSVEITN--DVISRS--ESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEI 347
Query: 178 YAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237
G +S GY E + S Q +RTGD A IQ G +
Sbjct: 348 VIAGPSVSRGYLGEPELTEKAFF------------SHEGQWAYRTGD-AGFIQDGQIFCQ 394
Query: 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE 297
GR D IK++G RM LEEIE +R V V+ ++ G + L+A IV +E + E
Sbjct: 395 GRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKE 454
Query: 298 IFLSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 335
L+S IK +++ LP MIP +F++ D + MT++GK+D
Sbjct: 455 FQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKID 493
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
P + + N YG E G T+ + + ++PIG+P++ +++ D +KP
Sbjct: 351 PALRLGNGYGPAESMGFTTHHAV-----VAGDLSGTALPIGVPLAGKRAYVLDDD-LKPA 404
Query: 174 E----GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
GE+Y G L++GY S +V + G + +RTGD ARR
Sbjct: 405 ANGALGELYVAGAGLAHGYVSRPALTAERFV-------ADPFAGPGGERMYRTGDLARRR 457
Query: 230 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVL 289
G L ++GR D +KI G R+ E+E L GHP V AV++ + LVA++V
Sbjct: 458 ADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA 517
Query: 290 KEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 344
+ + + ++ V+ LP M+P V +D LP T +GK+D +L+ S S
Sbjct: 518 ERADAPPDA--AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSGS 570
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 39/314 (12%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
L+ L+ G++L + P + ++N YG TE T F C + + ++
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN----TTFTCCHVVTDDDLEE- 330
Query: 149 KSVPIGLPISNCDIVLVE---SDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL-H 203
+PIG I+ ++L++ + +PD GEI A G L+ GY +++ + +V+L +
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390
Query: 204 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 263
+ +RTGD AR + G L F+GR D +K+NG R+ L +E R
Sbjct: 391 RGRLLRA---------YRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQ 441
Query: 264 PDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 323
P ++D A++ + G +L A+ + S + L + +W P+ V +
Sbjct: 442 PGILDCALLVRERNGVKQLLCAWT--GKADASPQALLRQLPTWQR--------PHACVRV 491
Query: 324 DSLPMTSSGKVDYASLSASTSFTI---SAQHDADETKASDLLQVIRKAFGHALMVEEVLH 380
++LP+T+ GK+D A+L + ++ D D+ + L + L E
Sbjct: 492 EALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQL-------WSELLGCEVGAA 544
Query: 381 HDNFFTMGGNSIAA 394
+FF GGNS+ A
Sbjct: 545 DQDFFLCGGNSLLA 558
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 26/259 (10%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM-STL 148
+L GE L +S + + FP+ I+N YG TE + + + R EM
Sbjct: 265 ALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITR-----EMVDNY 319
Query: 149 KSVPIGLPISNCDIVLVESDTVK---PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
+PIG P + +++ D + ++GEI G +S GY + +
Sbjct: 320 TRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLN------------NPE 367
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
+ Q + TGD + L++ GR D IK G R+ LE++ L P
Sbjct: 368 KTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPM 427
Query: 266 VVDT-AVVSHKHQGELVILVAFIVLKE---KKTSSEIFLS-SIKSWVSSKLPLAMIPNRF 320
V AV + + ++ L+A+IV+K+ ++ E+ L+ +IK+ V + M+P++F
Sbjct: 428 VASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKF 487
Query: 321 VFMDSLPMTSSGKVDYASL 339
++ DSLP+T +GK+D +L
Sbjct: 488 LYRDSLPLTPNGKIDIKTL 506
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L +GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 129/271 (47%), Gaps = 34/271 (12%)
Query: 68 VPSLMR--VVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGST 125
VP+L +V P L ++ ++ ++++ +GE LP + + + F IL+ GST
Sbjct: 281 VPTLYANMLVSPNLPARADV----AIRICTSAGEALPREIGERFTAHF-GCEILDGIGST 335
Query: 126 EVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE--GEIYAGGLC 183
E+ F R ++ +T + VP G I D E+ PD G++Y G
Sbjct: 336 EM---LHIFLSNRAGAVEYGTTGRPVP-GYEIELRD----EAGHAVPDGEVGDLYIKG-- 385
Query: 184 LSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 243
PS V NN + + G + R+GD R+ +G V+ GR D
Sbjct: 386 ------------PSAAVMYWNNREKSRATFLGE--WIRSGDKYCRLPNGCYVYAGRSDDM 431
Query: 244 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 303
+K++GQ ++ E+E L H V++ AVV H G LV AF+VLK + SEI +
Sbjct: 432 LKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFAPSEILAEEL 490
Query: 304 KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
K++V +L P VF+D LP T++GK+
Sbjct: 491 KAFVKDRLAPHKYPRDIVFVDDLPKTATGKI 521
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV+ ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SGK+
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 31/289 (10%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF- 113
+ + ++ L T P+ +R ++ SSL++L GE + W+ K
Sbjct: 344 QVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIG 403
Query: 114 -PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP 172
+++ + TE G F LP +E LK+ P LV+++ P
Sbjct: 404 KEKCPVVDTWWQTETGG----FMITPLPGAIE---LKAGSATRPFFGVQPALVDNEG-HP 455
Query: 173 DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDF 225
EG G L +++ + ++ + ++ + QTYF T GD
Sbjct: 456 QEGAT-EGNLVITDSWPGQARTLFGDHERFE-------------QTYFSTFKNMYFSGDG 501
Query: 226 ARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
ARR + G GR D + ++G R+ EIE L HP + + AVV H + + A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
++ L + S + +++WV ++ P+ + DSLP T SG +
Sbjct: 562 YVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAI 610
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 24/345 (6%)
Query: 4 LYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPP--IIELKKNLISIIHFLQAYS 61
++ G++ L S+SF + E A T LVV P + +++I
Sbjct: 210 VFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTV 269
Query: 62 ISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF--PNISIL 119
I++ T + + + A++ ++ S L+ ++ GE L M +K F ++
Sbjct: 270 INQTPT--AFLALTEAAVRGGRDV---SGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLV 324
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE-GEIY 178
N YG TE + T+ + + S + LP +V + V P E GE++
Sbjct: 325 NGYGITETTVFTTFEEITEAYLAQDASIIGRA---LPSFGTRVVGDDGRDVAPGETGELW 381
Query: 179 AGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238
G L+ GY ++ ++ + S Y+RTGD + G + G
Sbjct: 382 LSGAQLAEGYLRRPELTAEKFPEVTDEKTGE------SVRYYRTGDLVSELPDGRFAYEG 435
Query: 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ-GELVILVAFIVLKEKKTSSE 297
R D IK+ G R+ L +IE +R H DVVD V + + G+L ++ A++ + T++
Sbjct: 436 RADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSATTAR 495
Query: 298 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 342
+ IK+ LP M P R++ + LP T +GKVD A+++ S
Sbjct: 496 ELRNHIKTL----LPAYMHPARYLPLPGLPRTVNGKVDRAAVARS 536
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 42/321 (13%)
Query: 19 ISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPA 78
I I L L A++ T+ + K N I+ ++ I+ ++ VP + ++
Sbjct: 213 IYHISGLSVLLRAVIEGFTVRIVD----KFNAEQILTMIKNERITHISLVPQTLNWLM-- 266
Query: 79 LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR 138
Q +H P +L+ ++L G L +M I + L N+ I N +G TE C+ F
Sbjct: 267 ---QQGLHEPYNLQKILLGGAKLSATM--IETALQYNLPIYNSFGMTET---CSQF---- 314
Query: 139 LPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSE 198
L + EM + +G+P +N D+ + + K GE+ G + NGY P++
Sbjct: 315 LTATPEMLHARPDTVGMPSANVDVKIKNPN--KEGHGELMIKGANVMNGYL-----YPTD 367
Query: 199 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 258
N YF TGD A G ++ R+ I G+ + +IE
Sbjct: 368 LTGTFENG------------YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIET 415
Query: 259 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318
+ P + D V H + + V + S+I + + +++S L +P
Sbjct: 416 VAKQFPGISDAVCVGHPDDTWGQVPKLYFV-----SESDISKAQLIAYLSKHLAKYKVPK 470
Query: 319 RFVFMDSLPMTSSGKVDYASL 339
F +D+LP TS+GK+ L
Sbjct: 471 HFEKVDTLPYTSTGKLQRNKL 491
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 26/314 (8%)
Query: 24 HLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQH 83
H+ S +L + P +I K + S++ ++ Y +S VP +M + A
Sbjct: 234 HIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSI--AKSPDL 291
Query: 84 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE---VSGDCTYFDCKRLP 140
+ H SSL+++ G L + D + FP + YG TE V C F
Sbjct: 292 DKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAF------ 345
Query: 141 SILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYV 200
E +K G + N ++ +V+ +T G L E + +
Sbjct: 346 -AKEPFDIKPGACGTVVRNAEMKIVDPET-----------GASLPRNQPGEICIRGDQIM 393
Query: 201 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 260
K + N S + + + TGD +L + R IK G ++A E+E L
Sbjct: 394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 453
Query: 261 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 320
HP++ D AVV K + + VAF+V EK ++E IK ++S ++ R
Sbjct: 454 IAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATE---DEIKQYISKQVIFYKRIKRV 510
Query: 321 VFMDSLPMTSSGKV 334
F++++P SGK+
Sbjct: 511 FFIEAIPKAPSGKI 524
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 35/287 (12%)
Query: 64 RLTTVPSLMRVVLP-ALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLY 122
++T P + +VL A S+ + SS++++ L + D ++ FPN + Y
Sbjct: 318 KVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGY 377
Query: 123 GSTEVSGDCTYFDCKRLPSILEMS--------TLKSVPIGLPISNCDIVLVESDTVKPDE 174
G TE +L MS +KS G + N ++ +V+ DT
Sbjct: 378 GMTEAG------------PVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDT----- 420
Query: 175 GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234
G LS E + +K + N+ + + + TGD +L
Sbjct: 421 ------GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDEL 474
Query: 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT 294
+ R IK G ++A E+E L GHPD+ D AVV+ K + + VAF+V K
Sbjct: 475 FIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV---KSK 531
Query: 295 SSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 341
SE+ +K +VS ++ N+ F +S+P SGK+ L A
Sbjct: 532 DSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRA 578
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 52/310 (16%)
Query: 42 PIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVL 101
P+IE +K I+ + VP L V + A S+ + SSL++L + G
Sbjct: 266 PLIEREKVTITAL-------------VPPLAMVWMDAASSRRDDL--SSLQVLQVGGAKF 310
Query: 102 PLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161
+ +F ++ ++G E + T D P + ++T G P+S D
Sbjct: 311 SAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDD---PEEIIVNTQ-----GKPMSPYD 361
Query: 162 IVLVESD---TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQ 217
V D VKP E G + G GY+ + HN + S
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK---------AEEHN------AASFTED 406
Query: 218 TYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 277
++RTGD R + G +V GR I G+++A EE+E+ L HP V D A+VS Q
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466
Query: 278 --GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 334
GE + FI+ +++ + + +K+++ + L IP+R F++S P T GKV
Sbjct: 467 FLGERSCV--FIIPRDEAPKA----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 335 DYASLSASTS 344
+L + S
Sbjct: 521 SKKALREAIS 530
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 34/309 (11%)
Query: 35 ACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLL 94
C ++ P L N SII Q + ++ + VPS + + L +Q+ + SLKLL
Sbjct: 260 GCVVMAPNPEPL--NCFSII---QRHQVNMASLVPSAVIMWLEK-AAQYKDQI-QSLKLL 312
Query: 95 VLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG 154
+ G P S+ + ++ N + ++G E + T D S ++ T + PI
Sbjct: 313 QVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLD----DSDEQIFTTQGRPIS 367
Query: 155 LPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSC 214
S+ +I +V+ + EGEI G+ + G ++ + S HN+ + +
Sbjct: 368 ---SDDEIKIVDEQYREVPEGEI---GMLATRGPYTFCGYYQSPE---HNSQVFD----- 413
Query: 215 GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS- 273
Y+ +GD +R G+L +GR I G+++A EEIE + HP+V+ A+V+
Sbjct: 414 -EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAI 472
Query: 274 -HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSG 332
+ GE AFIV + + + + + ++ L P++ ++SLP+T+ G
Sbjct: 473 VDEQFGEKS--CAFIVSRNPELKAVVLRRHLMELGIAQYKL---PDQIKLIESLPLTAVG 527
Query: 333 KVDYASLSA 341
KVD L +
Sbjct: 528 KVDKKQLRS 536
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 28/347 (8%)
Query: 1 MQDLYPLHGEELLLFKTSISFI-DHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQA 59
M+ + H E++ I +I H +L C +V N +
Sbjct: 295 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 354
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIIS-KLFPN-IS 117
+ +++ P+ +R++ A S H SL+ L GE + +W+ S K+ N I
Sbjct: 355 HKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 414
Query: 118 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEI 177
I++ Y TE P ++ +K P D V+++ +T +
Sbjct: 415 IVDTYWQTESGSHLV------TPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH 468
Query: 178 YAGGLCLSNGY--FSESTFMPSE-YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234
G L + + F+ + + + Y+ + N Y+ TGD A + + G +
Sbjct: 469 AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG---------YYFTGDGAAKDKDGYI 519
Query: 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK-- 292
LGR D + ++G R++ EIE + P V + AVV + AF+VLK K
Sbjct: 520 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 579
Query: 293 -KTSSEIFLSSIKS----WVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
T+++ L IK V + P + +D LP T SGK+
Sbjct: 580 WSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKI 626
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 131/310 (42%), Gaps = 52/310 (16%)
Query: 42 PIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVL 101
P+IE +K I+ + VP L V A S+ + SSL++L + G
Sbjct: 266 PLIEREKVTITAL-------------VPPLAXVWXDAASSRRDDL--SSLQVLQVGGAKF 310
Query: 102 PLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161
+ +F ++ ++G E + T D P + ++T G P S D
Sbjct: 311 SAEAARRVKAVF-GCTLQQVFGXAEGLVNYTRLDD---PEEIIVNTQ-----GKPXSPYD 361
Query: 162 IVLVESD---TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQ 217
V D VKP E G + G GY+ + HN + S
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK---------AEEHN------AASFTED 406
Query: 218 TYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 277
++RTGD R + G +V GR I G+++A EE+E+ L HP V D A VS Q
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQ 466
Query: 278 --GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 334
GE + FI+ +++ + + +K+++ + L IP+R F++S P T GKV
Sbjct: 467 FLGERSCV--FIIPRDEAPKA----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 335 DYASLSASTS 344
+L + S
Sbjct: 521 SKKALREAIS 530
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 29/279 (10%)
Query: 60 YSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISIL 119
Y ++ P++ R ++ S +N S+LK V++GE L +++ + F I ++
Sbjct: 315 YGVTTFCAPPTIYRFLIKEDLSHYNF---STLKYAVVAGEPLNPEVFNRFLE-FTGIKLM 370
Query: 120 NLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP--IGLPISNCDIVLVESDTVKPDEGEI 177
+G TE + +I ++ P IG P I L++ D + GE
Sbjct: 371 EGFGQTET-----------VVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE- 418
Query: 178 YAGGLCLSNGYFSESTFMPSEYVKL--HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 235
G + ++ M + V L H + Y+ TGD A + G L
Sbjct: 419 -EGEIVINT--------MEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLW 469
Query: 236 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS 295
F+GR D IK +G ++ E+E L HP V++ A+ ++ A IVL + T
Sbjct: 470 FVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTP 529
Query: 296 SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
S+ + ++ V + P F+ LP T SGK+
Sbjct: 530 SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKI 568
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 31/290 (10%)
Query: 52 SIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISK 111
S++ ++ VP++ + L+S H +L+ LV+ G P S+ +
Sbjct: 258 SLVELFDGEGVTFTAGVPTVWLALADYLES--TGHRLKTLRRLVVGGSAAPRSLIARFER 315
Query: 112 LFPNISILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLK-SVPIGLPISNCDIVLV--ES 167
+ + + YG TE S F L S+ E L GLPI + + E
Sbjct: 316 M--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEG 373
Query: 168 DTVKPDE---GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGD 224
V D GE+ G ++ GY+ N +++ +FRTGD
Sbjct: 374 RPVPKDGKALGEVQLKGPWITGGYYG-------------NEEATRSALT--PDGFFRTGD 418
Query: 225 FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILV 284
A + G + R IK G+ ++ ++E+ L GHP V + AVV+ H +
Sbjct: 419 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478
Query: 285 AFIVLK-EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 333
A +V + EK T E+ +K+ + +P+ +VF + +P TS+GK
Sbjct: 479 AVVVPRGEKPTPEELNEHLLKAGFAK----WQLPDAYVFAEEIPRTSAGK 524
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 34/238 (14%)
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV--PIGLPISNCDIVLVESDTVKPD 173
++++N+YG TEV+ C+ IL S + + P+G +++ K
Sbjct: 320 VALVNVYGPTEVTIGCS------AGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGX 373
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
GE+ G ++NGY + + C+ + + +RTGD R
Sbjct: 374 AGELVIEGSLVANGYLN----------RPDAKGFCDIN----GRKXYRTGDIVRXDADSS 419
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQG-ELVILVAFIVLKE 291
++FLGRKD +K+ GQR+ L E+ +R P +D + H G LV+F+
Sbjct: 420 ILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG 479
Query: 292 KKTSSEI---------FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT-SSGKVDYASL 339
E+ +S++ LP +P+ + + +P+ +S K D +L
Sbjct: 480 AAVRGELRWINENYKEINNSLRQACEQTLPAYXVPDFIIPISFIPLRDTSAKTDAKAL 537
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 38/315 (12%)
Query: 33 LTACTLV--VPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSS 90
L ACT V +P K + + I+ L +Y I + P + R++L Q + P
Sbjct: 272 LGACTFVHLLP-----KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ--QDLSSYKFPHL 324
Query: 91 LKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 150
+ + +LP ++ + ++ + I YG TE C + T+K
Sbjct: 325 QNCVTVGESLLPETLENWRAQT--GLDIRESYGQTETGLTC-----------MVSKTMKI 371
Query: 151 VP--IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 208
P +G S D+ +++ D+G + G G P + + + +
Sbjct: 372 KPGYMGTAASCYDVQIID------DKGNVLPPGTEGDIGI----RVKPIRPIGIFSGYVD 421
Query: 209 NCSVSCGS--QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
N + + ++ GD + + G F+GR D I +G R+ E+E+ L HP V
Sbjct: 422 NPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV 481
Query: 267 VDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAMIPNRFVFMD 324
V+TAV+S ++ AF+VL + S E ++ V S P + F+
Sbjct: 482 VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVL 541
Query: 325 SLPMTSSGKVDYASL 339
+LP T +GK+ A L
Sbjct: 542 NLPKTVTGKIQRAKL 556
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 38/315 (12%)
Query: 33 LTACTLV--VPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSS 90
L ACT V +P K + + I+ L +Y I + P + R++L Q + P
Sbjct: 272 LGACTFVHLLP-----KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ--QDLSSYKFPHL 324
Query: 91 LKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 150
+ + +LP ++ + ++ + I YG TE C + T+K
Sbjct: 325 QNCVTVGESLLPETLENWRAQT--GLDIRESYGQTETGLTC-----------MVSKTMKI 371
Query: 151 VP--IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 208
P +G S D+ +++ D+G + G G P + + + +
Sbjct: 372 KPGYMGTAASCYDVQIID------DKGNVLPPGTEGDIGI----RVKPIRPIGIFSGYVD 421
Query: 209 NCSVSCGS--QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
N + + ++ GD + + G F+GR D I +G R+ E+E+ L HP V
Sbjct: 422 NPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV 481
Query: 267 VDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAMIPNRFVFMD 324
V+TAV+S ++ AF+VL + S E ++ V S P + F+
Sbjct: 482 VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVL 541
Query: 325 SLPMTSSGKVDYASL 339
+LP T +GK+ A L
Sbjct: 542 NLPKTVTGKIQRAKL 556
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 30/288 (10%)
Query: 57 LQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF--- 113
++ Y + VP + V++ L+S + + S LK+ + ++ + + KL
Sbjct: 264 IEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEK 323
Query: 114 ---PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTV 170
P + ++G TE C + + + KS G+P S+ ++ ++ +
Sbjct: 324 CNNPRLRHNQIWGXTEA--------CPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDG 375
Query: 171 KP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFA 226
+ + GEI G + GY+ + N C G + +FRTGD
Sbjct: 376 RELGVGESGEIVIRGPNIFKGYWK----------REKENQECWWYDEKGRK-FFRTGDVG 424
Query: 227 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAF 286
+ G L F R IK G +A E+E L H V D AV+ + + AF
Sbjct: 425 FIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAF 484
Query: 287 IVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
IVLK + ++ I WV ++ F++ LP T+SGK+
Sbjct: 485 IVLK-PEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 30/223 (13%)
Query: 117 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 173
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 291
+ LGR + G + EIE + P VV++AV V H GE V AF+VL
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAFVVLXR 449
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ SEI + ++V +L +P +F+D LP + G V
Sbjct: 450 EFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAV 492
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 154 GLPISNCDIVLVESDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 212
G P+ D V V P +GE+ G ++ G ++ + S HN S + +
Sbjct: 358 GYPMCPDDEVWVADAEGNPLPQGEV---GRLMTRGPYTFRGYYKSPQ---HNASAFDAN- 410
Query: 213 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 272
++ +GD G + GR+ I G+++A EEIE+ L HP V+ A+V
Sbjct: 411 -----GFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALV 465
Query: 273 SHKHQGELVILVAFIVLKEKKTSSEI--FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTS 330
S + + A++V+KE + ++ FL + KL P+R +DSLP+T+
Sbjct: 466 SMEDELMGEKSCAYLVVKEPLRAVQVRRFLRE-QGIAEFKL-----PDRVECVDSLPLTA 519
Query: 331 SGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGN 390
GKVD L + SA + + L +VI + +E DN G +
Sbjct: 520 VGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLDES---DEPFDDDNLIDYGLD 576
Query: 391 SI 392
S+
Sbjct: 577 SV 578
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 40/237 (16%)
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
PN + +G +E SG T+ + P KS L +V E + P
Sbjct: 294 PNATFWATFGQSETSGLSTFAPYRDRP--------KSAGRPLFWRTVAVVDAEDRPLPPG 345
Query: 174 E-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR-----TGDFAR 227
E GEI G + GY+ NN+ +Q FR TGD R
Sbjct: 346 EVGEIVLRGPTVFKGYW--------------NNA-------AATQHAFRNGWHHTGDMGR 384
Query: 228 RIQSGDLVFLGR--KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVA 285
G L + GR + IK G+ + E+E L+ HP + D V+ + A
Sbjct: 385 FDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444
Query: 286 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 342
V K ++ I ++ +V+S + P VF+++LP + G +D A++ +
Sbjct: 445 VCVCKPGES---IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTA 498
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 114 PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 173
P + + N YG E G T+ + + ++PIG+P++ +++ D +KP
Sbjct: 351 PALRLGNGYGPAESMGFTTHHAV-----VAGDLSGTALPIGVPLAGKRAYVLDDD-LKPA 404
Query: 174 E----GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 229
GE+Y G L++GY S +V + G + +RTGD ARR
Sbjct: 405 ANGALGELYVAGAGLAHGYVSRPALTAERFV-------ADPFAGPGGERMYRTGDLARRR 457
Query: 230 QSGDLVFLGRKD 241
G L ++GR D
Sbjct: 458 ADGVLEYVGRAD 469
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 34/253 (13%)
Query: 89 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 148
+ +LLV LP+ + I+ ++ YG TE T + S+
Sbjct: 272 AGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTE-----TLMNT----SVRADGEP 321
Query: 149 KSVPIGLPISNCDIVLVESDTVK------PDEGEIYAGGLCLSNGYFSESTFMPSEYVKL 202
++ +G+P+ ++ LVE D GEI G L Y
Sbjct: 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYL------------- 368
Query: 203 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT-IKINGQRMALEEIEHTLR 261
N + + +FRTGD A R G + +GRK IK G ++ EIE+ L
Sbjct: 369 --NRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL 426
Query: 262 GHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 321
HP+V + AV +VA+IV + L ++ V+++L P
Sbjct: 427 EHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP--ALGTLADHVAARLAPHKRPRVVR 484
Query: 322 FMDSLPMTSSGKV 334
++D++P GK+
Sbjct: 485 YLDAVPRNDMGKI 497
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 33/223 (14%)
Query: 117 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 173
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGXTETNXNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGKELPRGD 346
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
G I G + GY+ SE+ +F TGD + + G
Sbjct: 347 IGXIEVKGPNVFKGYWRXPEKTKSEFR---------------DDGFFITGDLGKIDERGY 391
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 291
+ LGR + G + +EIE + P VV++AV V H GE V V V+++
Sbjct: 392 VHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV---VVRD 448
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
K + I + + + +L P + +F+D LP + GKV
Sbjct: 449 K--GATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKV 489
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 124/310 (40%), Gaps = 53/310 (17%)
Query: 537 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC----- 591
W+ + + +D+SP++ K+ IYL S+K + A SV W K IEC
Sbjct: 13 WEFLIGNSIDSSPILA-KNGTIYL---GSSNKNLYAINTDGSVKWFFKSGEIIECRPSIG 68
Query: 592 ---------------------------SAAVLADFSQ----VVVGCYKGKIYFLDYLTGD 620
A+++DF+ + V G +Y ++ G
Sbjct: 69 KDGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSXDGHLYAIN-TDGT 127
Query: 621 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 680
W F+T + P+V + I+ GS+D+ LYA++ + ++ +I + +I
Sbjct: 128 EKWRFKTKKAIYATPIV-SEDGTIYVGSNDNYLYAIN-PDGTEKWRFKTNDAITSAASIG 185
Query: 681 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 740
+ + + + + + F+ + + PA S + + +DGH+
Sbjct: 186 KDGTIYFGSDKVYAINPDGTEKWNFYAGYW-TVTRPAI------SEDGTIYVTSLDGHLY 238
Query: 741 ALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 800
A++ G+ WR +TG I + P + S +G +Y+ + G W + G
Sbjct: 239 AINPDGTEKWRFKTGKRIESSPV--IGNTDTIYFGSYDGHLYAINPD-GTEKWNFETGSW 295
Query: 801 ITASAYIDEH 810
I A+ IDE+
Sbjct: 296 IIATPVIDEN 305
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 13/197 (6%)
Query: 621 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 680
I W F + P++ A I+ GS + NLYA++ + + G I P+I
Sbjct: 11 IKWEFLIGNSIDSSPIL-AKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG 68
Query: 681 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 740
+ + + S ++ AI+ W + + + I +V DGH+
Sbjct: 69 KDGTIYF---GSDKVYAINPDGTE---KWRFDTKKAIVSDFTIFEDILYVTSX--DGHLY 120
Query: 741 ALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 800
A+++ G+ WR +T I+A P S + + S + +Y+ + G W + D
Sbjct: 121 AINTDGTEKWRFKTKKAIYATPIVS--EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDA 177
Query: 801 ITASAYIDEHLQLKLES 817
IT++A I + + S
Sbjct: 178 ITSAASIGKDGTIYFGS 194
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/349 (19%), Positives = 129/349 (36%), Gaps = 76/349 (21%)
Query: 579 VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 638
+ WE + I+ S+ +LA + +G +Y ++ G + W F++ ++C+P +
Sbjct: 11 IKWEFLIGNSID-SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI- 67
Query: 639 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAI 698
I+ GS +YA++ + ++ +I I E D+LYV S G L AI
Sbjct: 68 GKDGTIYFGSD--KVYAIN-PDGTEKWRFDTKKAIVSDFTIFE--DILYVTSXDGHLYAI 122
Query: 699 SVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTG--- 755
+ W + + +A+ I S + + D ++ A++ G+ WR +T
Sbjct: 123 NTDGTE---KWRFKTKKAIYAT-PIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAI 178
Query: 756 ---------GPIFAGPCTSFAL------------------------PSQVLICSRNGSIY 782
G I+ G +A+ + + S +G +Y
Sbjct: 179 TSAASIGKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238
Query: 783 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 842
+ + G W + G ++ES I I S H+ +N D
Sbjct: 239 AINPD-GTEKWRFKTGK--------------RIESSPVIGNTDTIYFGSYDGHLYAINPD 283
Query: 843 VTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCI 890
T K N E I ++PV+ G ++ G R+ Y +
Sbjct: 284 GTEKWN------------FETGSWIIATPVIDENGTIYFGTRNGKFYAL 320
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 33/223 (14%)
Query: 117 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 173
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 291
+ LGR + G + EIE + P VV++AV V H GE V AF+VL
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAFVVLXR 449
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
+ SE + + + +L +P +F+D LP + G V
Sbjct: 450 EFAPSE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 278
+FRTGD G L R I G+ + EIE + G P V + AV+ +
Sbjct: 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450
Query: 279 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYAS 338
I A +V + + S + I + ++L +P + +F +++P +GK+
Sbjct: 451 WGEIAAAIVVADQNEVSEQ----QIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTV 506
Query: 339 LSASTSFTI 347
L S T+
Sbjct: 507 LREQYSATV 515
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 36/285 (12%)
Query: 57 LQAYSISRLTTVPSLMRVVLPA-LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN 115
LQ Y I VP+L + L ++++ S+L + G L + + ++K F
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKSTLIDKYDL---SNLHEIASGGAPLSKEVGEAVAKRFHL 333
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--- 172
I YG TE + I K +G + + +V+ DT K
Sbjct: 334 PGIRQGYGLTETTSAIL---------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384
Query: 173 -DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE+ G + +GY ++N N + + +GD A +
Sbjct: 385 NQRGELCVRGPMIMSGY-------------VNNPEATNALID--KDGWLHSGDIAYWDED 429
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
+ R IK G ++A E+E L HP++ D V + A +VL+
Sbjct: 430 EHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 489
Query: 292 KKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 335
KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 490 GKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 531
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 36/285 (12%)
Query: 57 LQAYSISRLTTVPSLMRVVLPA-LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN 115
LQ Y I VP+L + L ++++ S+L + G L + + ++K F
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKSTLIDKYDL---SNLHEIASGGAPLSKEVGEAVAKRFHL 333
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--- 172
I YG TE + I K +G + + +V+ DT K
Sbjct: 334 PGIRQGYGLTETTSAIL---------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 384
Query: 173 -DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE+ G + +GY ++N N + + +GD A +
Sbjct: 385 NQRGELCVRGPMIMSGY-------------VNNPEATNALID--KDGWLHSGDIAYWDED 429
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
+ R IK G ++A E+E L HP++ D V + A +VL+
Sbjct: 430 EHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 489
Query: 292 KKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 335
KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 490 GKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 531
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 36/285 (12%)
Query: 57 LQAYSISRLTTVPSLMRVVLPA-LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN 115
LQ Y I VP+L + L ++++ S+L + G L + + ++K F
Sbjct: 282 LQDYKIQSALLVPTLFSFFAKSTLIDKYDL---SNLHEIASGGAPLSKEVGEAVAKRFHL 338
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--- 172
I YG TE + I K +G + + +V+ DT K
Sbjct: 339 PGIRQGYGLTETTSAIL---------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 389
Query: 173 -DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE+ G + +GY ++N N + + +GD A +
Sbjct: 390 NQRGELCVRGPMIMSGY-------------VNNPEATNALID--KDGWLHSGDIAYWDED 434
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
+ R IK G ++A E+E L HP++ D V + A +VL+
Sbjct: 435 EHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 494
Query: 292 KKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 335
KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 495 GKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 536
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 36/285 (12%)
Query: 57 LQAYSISRLTTVPSLMRVVLPA-LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN 115
LQ Y I VP+L + + L ++++ S+L + G L + + ++K F
Sbjct: 282 LQDYKIQSALLVPTLFSFLAKSTLIDKYDL---SNLHEIASGGAPLSKEVGEAVAKRFHL 338
Query: 116 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--- 172
I YG TE + I K +G + + +V+ DT K
Sbjct: 339 PGIRQGYGLTETTSAIL---------ITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 389
Query: 173 -DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 231
GE+ G + +GY ++N N + + +GD A +
Sbjct: 390 NQRGELSVRGPMIMSGY-------------VNNPEATNALID--KDGWLHSGDIAYWDED 434
Query: 232 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 291
+ R IK G ++A E+E L HP++ D V + A +VL+
Sbjct: 435 EHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEH 494
Query: 292 KKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 335
KT +E I +V+S++ A + VF+D +P +GK+D
Sbjct: 495 GKTMTE---KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLD 536
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 33/223 (14%)
Query: 117 SILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP--D 173
++L YG TE + + + +D R+P +V LP + + E+ P D
Sbjct: 295 AVLERYGMTETNMNTSNPYDGDRVPG--------AVGPALPGVSARVTDPETGXELPRGD 346
Query: 174 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 233
G I G + GY+ SE+ +F TGD + G
Sbjct: 347 IGMIEVXGPNVFXGYWRMPEXTXSEFRD---------------DGFFITGDLGXIDERGY 391
Query: 234 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKE 291
+ LGR + G + EIE + P VV++AV V H GE V A +V
Sbjct: 392 VHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV--TAVVVRDX 449
Query: 292 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 334
T E + + + +L +P +F+D LP + G V
Sbjct: 450 GATIDE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAV 489
>pdb|3P1L|A Chain A, Crystal Structure Of Escherichia Coli Bamb, A Lipoprotein
Component Of The Beta-Barrel Assembly Machinery Complex,
Native Crystals
Length = 393
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 650
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 112 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 169
Query: 651 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 706
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 170 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 226
Query: 707 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 227 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 284
Query: 757 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815
G F + +++ + +N + + + G LW S + L L
Sbjct: 285 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 328
Query: 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 875
S + + + + S G +H + V +D K++ G + PV
Sbjct: 329 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 376
Query: 876 GRVFVGCRDDYIYCI 890
G++ + +D +Y I
Sbjct: 377 GKLLIQAKDGTVYSI 391
>pdb|2YH3|A Chain A, The Structure Of Bamb From E. Coli
Length = 379
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 650
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 90 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 147
Query: 651 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 706
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 148 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 204
Query: 707 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 205 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 262
Query: 757 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815
G F + +++ + +N + + + G LW S + L L
Sbjct: 263 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 306
Query: 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 875
S + + + + S G +H + V +D K++ G + PV
Sbjct: 307 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 354
Query: 876 GRVFVGCRDDYIYCI 890
G++ + +D +Y I
Sbjct: 355 GKLLIQAKDGTVYSI 369
>pdb|3Q54|A Chain A, Crystal Structure Of Escherichia Coli Bamb
Length = 368
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 650
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 87 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 144
Query: 651 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 706
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 145 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 201
Query: 707 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 202 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 259
Query: 757 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815
G F + +++ + +N + + + G LW S + L L
Sbjct: 260 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 303
Query: 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 875
S + + + + S G +H + V +D K++ G + PV
Sbjct: 304 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 351
Query: 876 GRVFVGCRDDYIYCI 890
G++ + +D +Y I
Sbjct: 352 GKLLIQAKDGTVYSI 366
>pdb|3PRW|A Chain A, Crystal Structure Of The Lipoprotein Bamb
Length = 377
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 650
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 96 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 153
Query: 651 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 706
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 154 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 210
Query: 707 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 211 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 268
Query: 757 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815
G F + +++ + +N + + + G LW S + L L
Sbjct: 269 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 312
Query: 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 875
S + + + + S G +H + V +D K++ G + PV
Sbjct: 313 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 360
Query: 876 GRVFVGCRDDYIYCI 890
G++ + +D +Y I
Sbjct: 361 GKLLIQAKDGTVYSI 375
>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P213
Length = 376
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 118/315 (37%), Gaps = 50/315 (15%)
Query: 591 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 650
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 95 LSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSN 152
Query: 651 HNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 706
L AL+ + + +P S+ G A V +GR++A+ ++
Sbjct: 153 GQLQALNEADGAVKWTVNLDMPS-LSLRGESAPTTAFGAAVVGGDNGRVSAVLME--QGQ 209
Query: 707 TLWLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 756
+W + E+ + + T N V +G++ ALD SG I+W+
Sbjct: 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-- 267
Query: 757 PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 815
G F + +++ + +N + + + G LW S + L L
Sbjct: 268 ----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS------------DLLHRLL 311
Query: 816 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG 875
S + + + + S G +H + V +D K++ G + PV
Sbjct: 312 TSPVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAAD 359
Query: 876 GRVFVGCRDDYIYCI 890
G++ + +D +Y I
Sbjct: 360 GKLLIQAKDGTVYSI 374
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 32/249 (12%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE---MS 146
SL+ + +G +P ++ + + + P + N+YG+TE + Y + + + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAM-NSLYMRQPKTGTEMAPGFFS 330
Query: 147 TLKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 331 EVRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG 379
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
++RT D A G + LGR D I G+ + EIE L P
Sbjct: 380 -------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 266 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
V + V+ Q + A +V + +T S L + SS+L P R+ +D
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQ 484
Query: 326 LPMTSSGKV 334
LP + KV
Sbjct: 485 LPKNALNKV 493
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 219 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKH 276
+ +GD A + G + R IK G ++ E+E L HP + D V +
Sbjct: 452 WLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPD 511
Query: 277 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGKVD 335
GEL A +VL+E KT +E + +V+ ++ + + F+D +P +GK+D
Sbjct: 512 AGELP--AAVVVLEEGKTMTE---QEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKID 566
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 30/248 (12%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 147
SL+ + +G +P ++ + + + P + N+YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 148 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 206
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPE---ATAEKLQDG- 379
Query: 207 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
++RT D A G + LGR D I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 267 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 326
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 327 PMTSSGKV 334
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup I222
pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
Spacegroup P212121
Length = 376
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 115/313 (36%), Gaps = 48/313 (15%)
Query: 592 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH 651
S V V +G K ++Y L+ G + W + GE +PVV L+ + +
Sbjct: 96 SGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNG 153
Query: 652 NLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 708
L AL+ + + + S+ G A V +GR++A+ + +
Sbjct: 154 QLQALNEADGAVKWTVNLDXPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLXE--QGQXI 211
Query: 709 WLHEL-------EVPAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI 758
W + E+ + + T N V +G++ ALD SG I W+
Sbjct: 212 WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIXWKREL---- 267
Query: 759 FAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 817
G F + +++ + +N + + + G LW S + L L S
Sbjct: 268 --GSVNDFIVDGNRIYLVDQNDRVXALTIDGGVTLWTQS------------DLLHRLLTS 313
Query: 818 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGR 877
+ + + + S G +H + V +D K++ G + PV G+
Sbjct: 314 PVLYNGNLVVGDSEGYLHWINV-----------EDGRFVAQQKVDSSG-FQTEPVAADGK 361
Query: 878 VFVGCRDDYIYCI 890
+ + +D +Y I
Sbjct: 362 LLIQAKDGTVYSI 374
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 545 VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE-----IKLEGRIECSAAVLADF 599
++A+PL D ++ + I DA LW K++ R C AV
Sbjct: 58 LEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGV 113
Query: 600 S----QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI----------- 644
+ +V VG G++ LD TG W+ QT K + APR +
Sbjct: 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE 173
Query: 645 -----WCGSHDHNLYALDFRNYRC------------------------VYKLPCGGSIFG 675
+ ++D + L +R Y +KL GG+++
Sbjct: 174 YGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWD 233
Query: 676 SPAIDEVHDVLYVASTSG 693
S A D D+LYV + +G
Sbjct: 234 SMAYDPELDLLYVGTGNG 251
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 34/250 (13%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCK----RLPSILEM 145
SL+ + +G P ++ + + + P + N+YG+TE K P
Sbjct: 273 SLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFF-- 329
Query: 146 STLKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHN 204
S ++ V IG D ++ + EGE I A GY ++ KL +
Sbjct: 330 SEVRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQATAE---KLQD 378
Query: 205 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 264
++RT D A G + LGR D I G+ + EIE L P
Sbjct: 379 G-------------WYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP 425
Query: 265 DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 324
V + V+ Q + A +V + +T S L + SS+L P R+ +D
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILD 483
Query: 325 SLPMTSSGKV 334
LP + KV
Sbjct: 484 QLPKNALNKV 493
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 32/249 (12%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE---MS 146
SL+ + +G +P ++ + + + P + N YG+TE + Y + + + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAM-NSLYMRQPKTGTEMAPGFFS 330
Query: 147 TLKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 331 EVRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG 379
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
++RT D A G + LGR D I G+ + EIE L P
Sbjct: 380 -------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 266 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
V + V+ Q + A +V + +T S L + SS+L P R+ +D
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQ 484
Query: 326 LPMTSSGKV 334
LP + KV
Sbjct: 485 LPKNALNKV 493
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 32/249 (12%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE---MS 146
SL+ + +G +P ++ + + + P + N YG+TE + Y + + + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAM-NSLYMRQPKTGTEMAPGFFS 330
Query: 147 TLKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNN 205
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 331 EVRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG 379
Query: 206 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 265
++RT D A G + LGR D I G+ + EIE L P
Sbjct: 380 -------------WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426
Query: 266 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 325
V + V+ Q + A +V + +T S L + SS+L P R+ +D
Sbjct: 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQ 484
Query: 326 LPMTSSGKV 334
LP + KV
Sbjct: 485 LPKNALNKV 493
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 90 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MST 147
SL+ + +G +P ++ + + + P + N+YG+TE K + S
Sbjct: 273 SLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSE 331
Query: 148 LKSVPIGLPISNCDIVLVESDTVKPDEGE-IYAGGLCLSNGYFSESTFMPSEYVKLHNNS 206
++ V IG D ++ + EGE I A GY ++ + KL +
Sbjct: 332 VRIVRIG---GGVDEIVANGE-----EGELIVAASDSAFVGYLNQPQ---ATAEKLQDG- 379
Query: 207 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 266
++RT D A G + LGR I G+ + EIE L P V
Sbjct: 380 ------------WYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGV 427
Query: 267 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 326
+ V+ Q + A +V + +T S L + SS+L P R+ +D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQL 485
Query: 327 PMTSSGKV 334
P + KV
Sbjct: 486 PKNALNKV 493
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 217 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 274
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 275 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 333
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 334 VD 335
+D
Sbjct: 532 ID 533
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 217 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 274
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 275 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 333
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 334 VD 335
+D
Sbjct: 532 ID 533
>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
Dehydrogenase From Pseudomonas Aeruginosa
Length = 582
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 708 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCT 764
+W H+ +P +A + T+ N V DG+ A D+ SG +W+ +TG I + P T
Sbjct: 479 VWEHKEHLPLWAGVLATAGNL-VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPIT 535
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 731 ICCLVDGHVVALDS----SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 786
I + D HV +L + SG ++W + P++AG + + V + +G +F+
Sbjct: 457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG--NLVFTGTGDGYFKAFDA 514
Query: 787 ESGNLLWEYSVGDPITA 803
+SG LW++ G I +
Sbjct: 515 KSGKELWKFQTGSGIVS 531
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 217 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSH 274
+ + TGD + + R IK G ++ E+E L HP + D V V
Sbjct: 417 EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPD 476
Query: 275 KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNRFVFMDSLPMTSSGK 333
GEL A +VL+ K +E + +V+S++ A + F+D +P +GK
Sbjct: 477 PVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGK 531
Query: 334 VD 335
+D
Sbjct: 532 ID 533
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 358 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLG-----IDMRLIYNFP 412
++++ Q FG L +V D+FF +GGNS+ A V +L I M+ +Y +
Sbjct: 43 SNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYK 102
Query: 413 TPSKL 417
T ++
Sbjct: 103 TVRQI 107
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 22/168 (13%)
Query: 55 HFLQAYSISRLTTVPSLMRVVLPALQSQHNMHVPSSLKLLVLSG-----EV-LPLSMWDI 108
FL R +++P L+ + P + + N + S+ G E+ +P ++ +I
Sbjct: 27 EFLNLEPGDRNSSLP-LVVNIPPVVTYKDNKYDVVSIGYAAFQGCRKVTEIKIPSTVREI 85
Query: 109 ISKLFPNIS---ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD---I 162
F N S I+N+ S + G CT+ C L SIL LKS+ + CD I
Sbjct: 86 GEFAFENCSKLEIINIPDSVKXIGRCTFSGCYALKSILLPLXLKSIGVE-AFKGCDFKEI 144
Query: 163 VLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC 210
+ E TV DE A C S Y S +P LHN C
Sbjct: 145 TIPEGVTVIGDE----AFATCESLEYVS----LPDSXETLHNGLFSGC 184
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 748 IIWRCRTGGPIFAG-PCTSFAL--------PSQVLICSRNGSIYSFE 785
IIWR GPI AG P +S + P+Q+++ RNG+I F+
Sbjct: 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 748 IIWRCRTGGPIFAG-PCTSFAL--------PSQVLICSRNGSIYSFE 785
IIWR GPI AG P +S + P+Q+++ RNG+I F+
Sbjct: 170 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 216
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 616 YLTGDIYWTFQTCGEVKCQPVVDAPR-QLIWCGSH---DHNLYALDFR-NYRCVYKLPCG 670
+ G I WT+Q+C + KC+ VV A + S+ DH R ++ V KL C
Sbjct: 150 HTEGGITWTWQSCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLSCD 209
Query: 671 GSIFGSPAIDEV 682
+I P ++++
Sbjct: 210 IAIAAHPEVNDM 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,145,012
Number of Sequences: 62578
Number of extensions: 1136504
Number of successful extensions: 2552
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 103
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)